- using R version 4.5.2 (2025-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.3.0-10) 14.3.0
GNU Fortran (Debian 14.3.0-10) 14.3.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘autostats/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘autostats’ version ‘0.4.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘autostats’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [7s/9s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [7s/8s] ERROR
Running examples in ‘autostats-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: auto_variable_contributions
> ### Title: Plot Variable Contributions
> ### Aliases: auto_variable_contributions
>
> ### ** Examples
>
>
> iris %>%
+ framecleaner::create_dummies() %>%
+ auto_variable_contributions(
+ tidy_formula(., target = Petal.Width)
+ )
1 column(s) have become 3 dummy columns
Error in if (validate & xgb_obj != "multi:softprob") { :
argument is of length zero
Calls: %>% -> auto_variable_contributions
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [28s/31s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘autostats.Rmd’ using rmarkdown
Quitting from autostats.Rmd:40-43 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (validate & xgb_obj != "multi:softprob") ...`:
! argument is of length zero
---
Backtrace:
▆
1. ├─iris %>% auto_variable_contributions(species_formula)
2. ├─autostats::auto_variable_contributions(., species_formula)
3. │ ├─base::suppressWarnings(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─data %>% tidy_xgboost(formula, validate = FALSE)
6. └─autostats::tidy_xgboost(., formula, validate = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'autostats.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘autostats.Rmd’
--- re-building ‘tidyXgboost.Rmd’ using rmarkdown
Quitting from tidyXgboost.Rmd:78-89 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xgb$feature_names <- nms`:
! ALTLIST classes must provide a Set_elt method [class: XGBAltrepPointerClass, pkg: xgboost]
---
Backtrace:
▆
1. ├─xgb_tuned_fit_grid %>% visualize_model()
2. ├─autostats::visualize_model(.)
3. └─autostats:::visualize_model.xgb.Booster(.)
4. └─autostats:::plot_varimp_xgboost(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tidyXgboost.Rmd' failed with diagnostics:
ALTLIST classes must provide a Set_elt method [class: XGBAltrepPointerClass, pkg: xgboost]
--- failed re-building ‘tidyXgboost.Rmd’
SUMMARY: processing the following files failed:
‘autostats.Rmd’ ‘tidyXgboost.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [5s/6s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs