• using R version 4.6.1 Patched (2026-10-05 r90641)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.2.0-3) 16.2.0     GNU Fortran (Debian 16.2.0-3) 16.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-10-07 05:29:23 UTC
• checking for file ‘HaDeX2/DESCRIPTION’ ... OK
• this is package ‘HaDeX2’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘HaDeX2’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/22s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [110s/137s] OK Examples with CPU (user + system) or elapsed time > 5s                                    user system elapsed plot_differential_uptake_curve 7.951 0.678 10.792 plot_differential_butterfly 7.198 0.404 10.068 plot_coverage_heatmap 7.005 0.145 10.014 plot_differential_chiclet 6.723 0.171 7.997 plot_manhattan 6.314 0.329 8.566 plot_volcano 6.386 0.215 8.668 calculate_aggregated_test_results 5.231 0.471 6.771 plot_uncertainty 4.677 0.066 6.437 show_p_diff_uptake_data 4.253 0.120 5.617 create_p_diff_uptake_dataset 3.896 0.285 5.506
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [121s/144s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [120s/144s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [123s/152s] OK
• checking PDF version of manual ... [8s/10s] OK
• checking HTML version of manual ... [7s/10s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: OK