* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HaDeX2’ ...
** this is package ‘HaDeX2’ version ‘1.0.0’
** package ‘HaDeX2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘HaDeX2’
finding HTML links ... done
HaDeX2-package html
HaDeX_GUI html
HaDeXify html
add_stat_dependency html
alpha_dat html
calculate_MHP html
calculate_aggregated_diff_uptake html
calculate_aggregated_test_results html
calculate_aggregated_uptake html
calculate_auc html
calculate_back_exchange html
calculate_confidence_limit_values html
calculate_diff_uptake html
calculate_exp_masses html
calculate_exp_masses_per_replicate html
calculate_kinetics html
calculate_p_value html
calculate_peptide_kinetics html
calculate_state_uptake html
create_aggregated_diff_uptake_dataset html
create_aggregated_uptake_dataset html
create_control_dataset html
create_diff_uptake_dataset html
create_kinetic_dataset html
create_overlap_distribution_dataset html
create_p_diff_uptake_dataset html
create_p_diff_uptake_dataset_with_confidence
html
create_quality_control_dataset html
create_replicate_dataset html
create_state_comparison_dataset html
create_state_uptake_dataset html
create_uptake_dataset html
get_n_replicates html
get_peptide_sequence html
get_protein_coverage html
get_protein_redundancy html
get_replicate_list_sd html
get_residue_positions html
get_structure_color html
hdx_data html
install_GUI html
is_GUI_installed html
new_hdx_data html
plot_aggregated_differential_uptake html
plot_aggregated_uptake html
plot_aggregated_uptake_structure html
plot_amino_distribution html
plot_butterfly html
plot_chiclet html
plot_coverage html
plot_coverage_heatmap html
plot_differential html
plot_differential_butterfly html
plot_differential_chiclet html
plot_differential_uptake_curve html
plot_manhattan html
plot_overlap html
plot_overlap_distribution html
plot_peptide_charge_measurement html
plot_peptide_mass_measurement html
plot_position_frequency html
plot_quality_control html
plot_replicate_histogram html
plot_replicate_mass_uptake html
plot_state_comparison html
plot_uncertainty html
plot_uptake_curve html
plot_volcano html
prepare_hdxviewer_export html
read_hdx html
reconstruct_sequence html
show_aggregated_uptake_data html
show_coverage_heatmap_data html
show_diff_uptake_data html
show_diff_uptake_data_confidence html
show_overlap_data html
show_p_diff_uptake_data html
show_peptide_charge_measurement html
show_peptide_mass_measurement html
show_quality_control_data html
show_replicate_histogram_data html
show_summary_data html
show_uc_data html
show_uptake_data html
update_hdexaminer_file html
validate_hdx_data html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HaDeX2)