- using R version 4.4.0 alpha (2024-03-31 r86238)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘dataone/DESCRIPTION’ ... OK
- this is package ‘dataone’ version ‘2.2.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘dataone’ can be installed ... [5s/5s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s/4s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) AuthenticationManager-class.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AuthenticationManager-class.Rd:61: Lost braces
61 | \code{\link{dataone}}{ package description.}
| ^
checkRd: (-1) CNode-class.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CNode-class.Rd:42: Lost braces
42 | \code{\link{dataone}}{ package description.}
| ^
checkRd: (-1) CNode.Rd:36: Lost braces
36 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) CertificateManager-class.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CertificateManager-class.Rd:75: Lost braces
75 | \code{\link{dataone}}{ package description.}
| ^
checkRd: (-1) D1Client-class.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Client-class.Rd:41: Lost braces
41 | \code{\link{dataone}}{ package description.}
| ^
checkRd: (-1) D1Client-initialize.Rd:37: Lost braces
37 | \code{\link[=D1Client-class]{dataone}}{ class description.}
| ^
checkRd: (-1) D1Client.Rd:48: Lost braces
48 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) D1Node-class.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Node-class.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) D1Object-class.Rd:31: Lost braces
31 | \code{\link{dataone}}{ package description.}
| ^
checkRd: (-1) D1Object-initialize.Rd:25: Lost braces
25 | \code{\link[=D1Object-class]{D1Object}}{ class description.}
| ^
checkRd: (-1) D1Object.Rd:19: Lost braces
19 | \code{\link[=D1Object-class]{D1Object}}{ class description.}
| ^
checkRd: (-1) MNode-class.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MNode-class.Rd:73: Lost braces
73 | \code{\link{dataone}}{ package description.}
| ^
checkRd: (-1) MNode.Rd:37: Lost braces
37 | \code{\link[=MNode-class]{MNode}}{ class description.}
| ^
checkRd: (-1) archive.Rd:69: Lost braces
69 | \code{\link[=D1Node-class]{D1Node}}{ class description.}
| ^
checkRd: (-1) convert.csv.Rd:33: Lost braces
33 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) createDataPackage.Rd:49: Lost braces
49 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) d1IdentifierSearch.Rd:34: Lost braces
34 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) d1SolrQuery.Rd:39: Lost braces
39 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) dataone-defunct.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-defunct.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone-deprecated.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dataone.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadObject.Rd:51: Lost braces
51 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) encodeUrlPath.Rd:34: Lost braces
34 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) encodeUrlQuery.Rd:34: Lost braces
34 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getCN.Rd:28: Lost braces
28 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getChecksum.Rd:48: Lost braces
48 | \code{\link{D1Node-class}{D1Node}}{ class description.}
| ^
checkRd: (-1) getD1Object.Rd:35: Lost braces
35 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getDataObject.Rd:77: Lost braces
77 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getDataPackage.Rd:70: Lost braces
70 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getEndpoint.Rd:33: Lost braces
33 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getFormat.Rd:36: Lost braces
36 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) getMN.Rd:35: Lost braces
35 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getMNode.Rd:37: Lost braces
37 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) getMNodeId.Rd:29: Lost braces
29 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) getObject.Rd:45: Lost braces
45 | \code{\link{D1Node-class}{D1Node}}{ class description.}
| ^
checkRd: (-1) getPackage.Rd:52: Lost braces
52 | \code{\link[=MNode-class]{MNode}}{ class description.}
| ^
checkRd: (-1) getSystemMetadata.Rd:57: Lost braces
57 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) hasReservation.Rd:46: Lost braces
46 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) isAuthorized.Rd:50: Lost braces
50 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) listFormats.Rd:32: Lost braces
32 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) listMemberNodes.Rd:26: Lost braces
26 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) listNodes.Rd:33: Lost braces
33 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) reserveIdentifier.Rd:43: Lost braces
43 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) setMNodeId.Rd:27: Lost braces
27 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) setObsoletedBy.Rd:33: Lost braces
33 | \code{\link[=CNode-class]{CNode}}{ class description.}
| ^
checkRd: (-1) setPublicAccess.Rd:24: Lost braces
24 | \code{\link[=DataObject-class]{DataObject}}{ class description.}
| ^
checkRd: (-1) uploadDataObject.Rd:61: Lost braces
61 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
checkRd: (-1) uploadDataPackage.Rd:88: Lost braces
88 | \code{\link[=D1Client-class]{D1Client}}{ class description.}
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/12s] OK
Running ‘testthat.R’ [3s/12s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [17s/19s] OK
- checking PDF version of manual ... [6s/7s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '