- using R Under development (unstable) (2023-09-29 r85235)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘data.table/DESCRIPTION’ ... OK
- this is package ‘data.table’ version ‘1.14.8’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘data.table’ can be installed ... [68s/79s] OK
See the install log for details.
- used C compiler: ‘gcc-13 (GCC) 13.2.0’
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [42s/48s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking include directives in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [138s/159s] ERROR
Running ‘autoprint.R’
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘froll.R’ [38s/44s]
Running ‘knitr.R’
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [94s/106s]
Running ‘nafill.R’
Running ‘other.R’
Running ‘types.R’
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
>
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
getDTthreads(verbose=TRUE):
OpenMP version (_OPENMP) 201511
omp_get_num_procs() 24
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
R_DATATABLE_THROTTLE unset (default 1024)
omp_get_thread_limit() 2
omp_get_max_threads() 24
OMP_THREAD_LIMIT 2
OMP_NUM_THREADS unset
RestoreAfterFork true
data.table is using 2 threads with throttle==1024. See ?setDTthreads.
test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw
Test 1962.0473 produced 0 errors but expected 1
Expected: DT is an empty list() of 0 columns
Observed:
Test 2040.1 produced 1 errors but expected 0
Expected:
Observed: 'by' or 'keyby' must evaluate to a vector or a list of vectors (where 'list' includes data.table and data.frame which are lists, too)
Test 2040.2 produced 1 errors but expected 0
Expected:
Observed: 'by' or 'keyby' must evaluate to a vector or a list of vectors (where 'list' includes data.table and data.frame which are lists, too)
Test 2067.4 ran without errors but failed check that x equals y:
> x = shift(list(z, 1:3))
First 2 of 2 (type 'list'):
[[1]]
[1] NA 1+3i 2+2i
[[2]]
[1] NA 1 2
> y = list(c(NA, z[1:2]), c(NA, 1:2))
First 2 of 2 (type 'list'):
[[1]]
[1] NA 1+3i 2+2i
[[2]]
[1] NA 1 2
Sun Oct 1 03:34:18 2023 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==201511; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', zlibVersion()==1.2.11 ZLIB_VERSION==1.2.11
Error in test.data.table() :
4 errors out of 9917. Search tests/tests.Rraw for test numbers: 1962.0473, 2040.1, 2040.2, 2067.4.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [79s/93s] OK
- checking PDF version of manual ... [15s/19s] OK
- checking HTML version of manual ... [8s/11s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR