- using R Under development (unstable) (2025-12-02 r89085)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘IVDML/DESCRIPTION’ ... OK
- this is package ‘IVDML’ version ‘1.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘IVDML’ can be installed ... [5s/16s] OK
See the install log for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [8s/32s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [12s/50s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [29s/110s] ERROR
Running ‘testthat.R’ [28s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(IVDML)
>
> test_check("IVDML")
Saving _problems/test-fit_IVDML-86.R
Saving _problems/test-fit_IVDML-98.R
Fitted IVDML object
Machine learning method: gam
IV methods: linearIV, mlIV
Number of cross-fitting sample splits: 1[ FAIL 2 | WARN 6 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fit_IVDML.R:86:3'): fit_IVDML works when ml_par are set globally. ──
Expected `fit_IVDML(...)` not to throw any errors.
Actually got a <getvarError> with message:
argument "y" is missing, with no default
── Failure ('test-fit_IVDML.R:98:3'): fit_IVDML works when ml_par is set differently for the different nuisance functions. ──
Expected `fit_IVDML(...)` not to throw any errors.
Actually got a <getvarError> with message:
argument "y" is missing, with no default
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 31 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [7s/27s] OK
- checking HTML version of manual ... [3s/12s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR