• using R Under development (unstable) (2025-11-28 r89073)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 21.1.6     flang version 21.1.6
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘spam/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘spam’ version ‘2.11-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘spam’ can be installed ... [79s/114s] OK See the install log for details.
• used C compiler: ‘clang version 21.1.6’
• used Fortran compiler: ‘flang version 21.1.6’
• used C++ compiler: ‘clang version 21.1.6’
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [55s/73s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking usage of KIND in Fortran files ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/12s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [49s/78s] ERROR   Running ‘demo_cholesky.R’   Comparing ‘demo_cholesky.Rout’ to ‘demo_cholesky.Rout.save’ ... OK   Running ‘demo_jss10-example1.R’   Comparing ‘demo_jss10-example1.Rout’ to ‘demo_jss10-example1.Rout.save’ ... OK   Running ‘demo_jss10-figures-table.R’ [10s/15s]   Comparing ‘demo_jss10-figures-table.Rout’ to ‘demo_jss10-figures-table.Rout.save’ ... OK   Running ‘demo_jss15-BYM.R’   Comparing ‘demo_jss15-BYM.Rout’ to ‘demo_jss15-BYM.Rout.save’ ... OK   Running ‘demo_jss15-Leroux.R’   Comparing ‘demo_jss15-Leroux.Rout’ to ‘demo_jss15-Leroux.Rout.save’ ... OK   Running ‘demo_spam.R’   Comparing ‘demo_spam.Rout’ to ‘demo_spam.Rout.save’ ... OK   Running ‘demo_timing.R’   Comparing ‘demo_timing.Rout’ to ‘demo_timing.Rout.save’ ... OK   Running ‘jss_areal_counts.R’   Comparing ‘jss_areal_counts.Rout’ to ‘jss_areal_counts.Rout.save’ ... OK   Running ‘testthat.R’ [14s/22s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # HEADER ####################################################   > # This is file spam/tests/testthat.R. #   > # It is part of the R package spam, #   > # --> https://CRAN.R-project.org/package=spam #   > # --> https://CRAN.R-project.org/package=spam64 #   > # --> https://git.math.uzh.ch/reinhard.furrer/spam #   > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], #   > # Roman Flury [aut], Daniel Gerber [ctb], #   > # Kaspar Moesinger [ctb] #   > # HEADER END ################################################   >   > library("testthat")   > # library("spam")   >   > test_check("spam")   Loading required package: spam   Spam version 2.11-1 (2025-01-20) is loaded.   Type 'help( Spam)' or 'demo( spam)' for a short introduction   and overview of this package.   Help for individual functions is also obtained by adding the   suffix '.spam' to the function name, e.g. 'help( chol.spam)'.      Attaching package: 'spam'      The following objects are masked from 'package:base':          backsolve, forwardsolve      Saving _problems/test-diff-33.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 729 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-diff.R:33:5'): diff ──────────────────────────────────────────   Expected `diff(x, 4, d = 4)` to equal `diff(as.spam(x), 4, d = 4)`.   Differences:   Attributes: < Modes: list, NULL >   Attributes: < Lengths: 1, 0 >   Attributes: < names for target but not for current >   Attributes: < current is not list-like >      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 729 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [15s/21s] OK
• checking PDF version of manual ... [13s/19s] OK
• checking HTML version of manual ... [13s/24s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR