* installing *source* package ‘spam’ ...
** this is package ‘spam’ version ‘2.11-3’
** package ‘spam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
using Fortran compiler: ‘flang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
using C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o
flang-22 -fpic -O2 -pedantic -c bckslvmodified.f -o bckslvmodified.o
flang-22 -fpic -O2 -pedantic -c cholmodified.f -o cholmodified.o
flang-22 -fpic -O2 -pedantic -c dgetv0.f -o dgetv0.o
flang-22 -fpic -O2 -pedantic -c dist.f -o dist.o
./dist.f:255:24: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1.745329238474369049072265625e-2_4 is inexact [-Wreal-constant-widening]
parameter (rad = 0.01745329251994329)
^^^^^^^^^^^^^^^^^^^
./dist.f:256:26: warning: Default real literal in REAL(8) context might need a kind suffix, as its rounded value 1._4 is inexact [-Wreal-constant-widening]
parameter (thres = 0.99999999999)
^^^^^^^^^^^^^
clang++-22 -stdlib=libc++ -std=gnu++20 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c distCpp.cpp -o distCpp.o
flang-22 -fpic -O2 -pedantic -c dn_ARPACK.f -o dn_ARPACK.o
./dn_ARPACK.f:1453:28: warning: Value of local variable 'levec' is never used [-Wunused-variable]
& ldh, ldq, levec, mode, mxiter, nb,
^^^^^
flang-22 -fpic -O2 -pedantic -c dn_eigen.f -o dn_eigen.o
flang-22 -fpic -O2 -pedantic -c ds_ARPACK.f -o ds_ARPACK.o
flang-22 -fpic -O2 -pedantic -c ds_eigen.f -o ds_eigen.o
flang-22 -fpic -O2 -pedantic -c fromsparsekit.f -o fromsparsekit.o
flang-22 -fpic -O2 -pedantic -c gmult.f -o gmult.o
clang-22 -std=gnu23 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang22/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
flang-22 -fpic -O2 -pedantic -c kronecker.f -o kronecker.o
flang-22 -fpic -O2 -pedantic -c permutation.f -o permutation.o
flang-22 -fpic -O2 -pedantic -c rowcolstats.f -o rowcolstats.o
flang-22 -fpic -O2 -pedantic -c spamown.f -o spamown.o
flang-22 -fpic -O2 -pedantic -c spamown2.f -o spamown2.o
flang-22 -fpic -O2 -pedantic -c xybind.f -o xybind.o
clang++-22 -stdlib=libc++ -std=gnu++20 -shared -L/usr/local/clang/lib64 -L/usr/local/clang22/lib -L/usr/local/clang22/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/22/lib/x86_64-unknown-linux-gnu -o spam.so RcppExports.o bckslvmodified.o cholmodified.o dgetv0.o dist.o distCpp.o dn_ARPACK.o dn_eigen.o ds_ARPACK.o ds_eigen.o fromsparsekit.o gmult.o init.o kronecker.o permutation.o rowcolstats.o spamown.o spamown2.o xybind.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -lflang_rt.runtime -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
installing to /data/gannet/ripley/R/packages/tests-clang/spam.Rcheck/00LOCK-spam/00new/spam/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘diag’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘norm’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘spam’
Creating a new generic function for ‘backsolve’ in package ‘spam’
Creating a new generic function for ‘forwardsolve’ in package ‘spam’
Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘spam’
(from the saved implicit definition)
Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘rbind’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘cbind’ from package ‘base’ in package ‘spam’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spam)