• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:14:07 UTC
• checking for file ‘glmnet/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘glmnet’ version ‘5.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘glmnet’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/24s] NOTE Found calls to structure() using deprecated special names:   glmnet/inst/doc/glmnet.R (.Names: 2) '.Names' should be changed to 'names'.
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/2s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/16s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [10s/12s] OK   Running ‘testthat.R’ [10s/12s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [58s/69s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1V5F0s’ ‘~/tmp/scratch/Rtmp1iba4d’   ‘~/tmp/scratch/Rtmp1ijrOo’ ‘~/tmp/scratch/Rtmp2OPSbu’   ‘~/tmp/scratch/Rtmp2iMHRX’ ‘~/tmp/scratch/Rtmp33o6vk’   ‘~/tmp/scratch/Rtmp3BAeyK’ ‘~/tmp/scratch/Rtmp3ET0q9’   ‘~/tmp/scratch/Rtmp3b1vn8’ ‘~/tmp/scratch/Rtmp3gpGKK’   ‘~/tmp/scratch/Rtmp4lmDkN’ ‘~/tmp/scratch/Rtmp53ITaG’   ‘~/tmp/scratch/Rtmp5RStt2’ ‘~/tmp/scratch/Rtmp5crVmX’   ‘~/tmp/scratch/Rtmp5gtVDY’ ‘~/tmp/scratch/Rtmp5n82IZ’   ‘~/tmp/scratch/Rtmp5oUVTE’ ‘~/tmp/scratch/Rtmp6MjIZ4’   ‘~/tmp/scratch/Rtmp6YKsZf’ ‘~/tmp/scratch/Rtmp6x2jIa’   ‘~/tmp/scratch/Rtmp87uDCl’ ‘~/tmp/scratch/Rtmp8CZQr3’   ‘~/tmp/scratch/Rtmp8YIvNy’ ‘~/tmp/scratch/Rtmp9CFNTc’   ‘~/tmp/scratch/Rtmp9qXpVp’ ‘~/tmp/scratch/RtmpABv2XO’   ‘~/tmp/scratch/RtmpACnrUr’ ‘~/tmp/scratch/RtmpAKq9lg’   ‘~/tmp/scratch/RtmpAP3g1k’ ‘~/tmp/scratch/RtmpAbi8rH’   ‘~/tmp/scratch/RtmpAkYlIB’ ‘~/tmp/scratch/RtmpAlgeiL’   ‘~/tmp/scratch/RtmpB3IIf9’ ‘~/tmp/scratch/RtmpBJdOM9’   ‘~/tmp/scratch/RtmpBLczlt’ ‘~/tmp/scratch/RtmpBXc9s8’   ‘~/tmp/scratch/RtmpBtloyX’ ‘~/tmp/scratch/RtmpBxJhav’   ‘~/tmp/scratch/RtmpCPDUmV’ ‘~/tmp/scratch/RtmpD3PS1x’   ‘~/tmp/scratch/RtmpDHJCvI’ ‘~/tmp/scratch/RtmpDWDsyA’   ‘~/tmp/scratch/RtmpDnxFDq’ ‘~/tmp/scratch/RtmpDqGjY5’   ‘~/tmp/scratch/RtmpE17KcW’ ‘~/tmp/scratch/RtmpE923Jj’   ‘~/tmp/scratch/RtmpEI9PJO’ ‘~/tmp/scratch/RtmpEZvx7C’   ‘~/tmp/scratch/RtmpEfBOJR’ ‘~/tmp/scratch/RtmpF3mGQg’   ‘~/tmp/scratch/RtmpFD0AJs’ ‘~/tmp/scratch/RtmpFkkTVh’   ‘~/tmp/scratch/RtmpFuCtfz’ ‘~/tmp/scratch/RtmpFxRQqk’   ‘~/tmp/scratch/RtmpG0qNra’ ‘~/tmp/scratch/RtmpGXyARu’   ‘~/tmp/scratch/RtmpGdIV6Z’ ‘~/tmp/scratch/RtmpGlLUoy’   ‘~/tmp/scratch/RtmpHCNPLm’ ‘~/tmp/scratch/RtmpHDHDRc’   ‘~/tmp/scratch/RtmpHVq68H’ ‘~/tmp/scratch/RtmpHk5HR4’   ‘~/tmp/scratch/RtmpI82JbH’ ‘~/tmp/scratch/RtmpICQi4o’   ‘~/tmp/scratch/RtmpKqhF50’ ‘~/tmp/scratch/RtmpKzS5W8’   ‘~/tmp/scratch/RtmpL5YVrw’ ‘~/tmp/scratch/RtmpLRhUbF’   ‘~/tmp/scratch/RtmpLaE3su’ ‘~/tmp/scratch/RtmpM2jO4I’   ‘~/tmp/scratch/RtmpMP5HL6’ ‘~/tmp/scratch/RtmpMPj8BX’   ‘~/tmp/scratch/RtmpN80EP2’ ‘~/tmp/scratch/RtmpNDpstD’   ‘~/tmp/scratch/RtmpNVmLTr’ ‘~/tmp/scratch/RtmpO5cQhp’   ‘~/tmp/scratch/RtmpONhq1k’ ‘~/tmp/scratch/RtmpOSSOIY’   ‘~/tmp/scratch/RtmpOTBXZt’ ‘~/tmp/scratch/RtmpOTaofY’   ‘~/tmp/scratch/RtmpPRXrI9’ ‘~/tmp/scratch/RtmpQAFVDi’   ‘~/tmp/scratch/RtmpQIZOgo’ ‘~/tmp/scratch/RtmpQtEy85’   ‘~/tmp/scratch/RtmpRN0jes’ ‘~/tmp/scratch/RtmpRPuLfN’   ‘~/tmp/scratch/RtmpSbKZi0’ ‘~/tmp/scratch/RtmpSv2rJl’   ‘~/tmp/scratch/RtmpT5KtTX’ ‘~/tmp/scratch/RtmpTGk2JF’   ‘~/tmp/scratch/RtmpTmM8sT’ ‘~/tmp/scratch/RtmpUDSsj9’   ‘~/tmp/scratch/RtmpUFXV55’ ‘~/tmp/scratch/RtmpUSNFIM’   ‘~/tmp/scratch/RtmpUZ2Qb7’ ‘~/tmp/scratch/RtmpUmUqk4’   ‘~/tmp/scratch/RtmpVXrZJ2’ ‘~/tmp/scratch/RtmpVfqAup’   ‘~/tmp/scratch/RtmpVmm92f’ ‘~/tmp/scratch/RtmpW2iZQf’   ‘~/tmp/scratch/RtmpW8WLYi’ ‘~/tmp/scratch/RtmpWrGpHb’   ‘~/tmp/scratch/RtmpWtTdqA’ ‘~/tmp/scratch/RtmpWw4WDB’   ‘~/tmp/scratch/RtmpX0HhcV’ ‘~/tmp/scratch/RtmpXJl2Mm’   ‘~/tmp/scratch/RtmpXWYR0Z’ ‘~/tmp/scratch/RtmpXcRp3P’   ‘~/tmp/scratch/RtmpXlAruo’ ‘~/tmp/scratch/RtmpYFdcaZ’   ‘~/tmp/scratch/RtmpYWmgbW’ ‘~/tmp/scratch/RtmpYkJjCK’   ‘~/tmp/scratch/RtmpYnVWw9’ ‘~/tmp/scratch/RtmpZ0j5jr’   ‘~/tmp/scratch/RtmpZC8G5l’ ‘~/tmp/scratch/RtmpZFkDcR’   ‘~/tmp/scratch/RtmpabGEg3’ ‘~/tmp/scratch/RtmpciFu0Y’   ‘~/tmp/scratch/RtmpdUL0IU’ ‘~/tmp/scratch/Rtmpdnb8IM’   ‘~/tmp/scratch/RtmpdvwYQJ’ ‘~/tmp/scratch/RtmpeOB5dT’   ‘~/tmp/scratch/RtmpeXNqWY’ ‘~/tmp/scratch/Rtmpeu1Fjw’   ‘~/tmp/scratch/RtmpfOYfkz’ ‘~/tmp/scratch/RtmpfSWujs’   ‘~/tmp/scratch/Rtmpfx8QtH’ ‘~/tmp/scratch/Rtmpg7il4T’   ‘~/tmp/scratch/RtmpgDtzib’ ‘~/tmp/scratch/RtmpgbXgSv’   ‘~/tmp/scratch/RtmpgtlVY8’ ‘~/tmp/scratch/RtmphALnkB’   ‘~/tmp/scratch/RtmphQyQOd’ ‘~/tmp/scratch/Rtmphon9gx’   ‘~/tmp/scratch/RtmpigQViR’ ‘~/tmp/scratch/RtmpinarDK’   ‘~/tmp/scratch/RtmpjHuTxu’ ‘~/tmp/scratch/RtmpjOVpu9’   ‘~/tmp/scratch/RtmpjVGQ9y’ ‘~/tmp/scratch/RtmpjeO4cv’   ‘~/tmp/scratch/RtmpjjxdZh’ ‘~/tmp/scratch/Rtmpko9JYG’   ‘~/tmp/scratch/RtmpmKanKW’ ‘~/tmp/scratch/RtmpmMBUfN’   ‘~/tmp/scratch/RtmpmpUUbS’ ‘~/tmp/scratch/RtmpnHoJpr’   ‘~/tmp/scratch/Rtmpnm194G’ ‘~/tmp/scratch/Rtmpqsrf0f’   ‘~/tmp/scratch/Rtmpr2QCHz’ ‘~/tmp/scratch/RtmprC7RbB’   ‘~/tmp/scratch/RtmprTPX9M’ ‘~/tmp/scratch/RtmprodxOB’   ‘~/tmp/scratch/Rtmps1GLSD’ ‘~/tmp/scratch/RtmpsKW15y’   ‘~/tmp/scratch/RtmpsndHL2’ ‘~/tmp/scratch/RtmpsqBKBk’   ‘~/tmp/scratch/RtmptAacLK’ ‘~/tmp/scratch/RtmptDLjbh’   ‘~/tmp/scratch/Rtmptw4EgO’ ‘~/tmp/scratch/Rtmpu4rsjX’   ‘~/tmp/scratch/RtmpvWDscF’ ‘~/tmp/scratch/RtmpwRwN8d’   ‘~/tmp/scratch/RtmpwaoLjv’ ‘~/tmp/scratch/Rtmpx1OhLG’   ‘~/tmp/scratch/Rtmpx3oRr9’ ‘~/tmp/scratch/Rtmpx73x7B’   ‘~/tmp/scratch/RtmpxVM8g4’ ‘~/tmp/scratch/RtmpxqjpxP’   ‘~/tmp/scratch/RtmpxyGD0p’ ‘~/tmp/scratch/RtmpyecLk2’   ‘~/tmp/scratch/Rtmpym1zrG’ ‘~/tmp/scratch/ccldh7bx.s’   ‘~/tmp/scratch/quarto-session377030387b1793e0’   ‘~/tmp/scratch/xvfb-run.0RJikV’ ‘~/tmp/scratch/xvfb-run.1KFSxp’   ‘~/tmp/scratch/xvfb-run.2VQucJ’ ‘~/tmp/scratch/xvfb-run.41yRJh’   ‘~/tmp/scratch/xvfb-run.49tFoj’ ‘~/tmp/scratch/xvfb-run.4QmAco’   ‘~/tmp/scratch/xvfb-run.68x07R’ ‘~/tmp/scratch/xvfb-run.6d4Cx7’   ‘~/tmp/scratch/xvfb-run.A2IJy0’ ‘~/tmp/scratch/xvfb-run.A3csZc’   ‘~/tmp/scratch/xvfb-run.AMI4Tk’ ‘~/tmp/scratch/xvfb-run.Aqv9vm’   ‘~/tmp/scratch/xvfb-run.BGl2A3’ ‘~/tmp/scratch/xvfb-run.BlLK79’   ‘~/tmp/scratch/xvfb-run.CL3tVl’ ‘~/tmp/scratch/xvfb-run.DgbIEq’   ‘~/tmp/scratch/xvfb-run.DsnvD6’ ‘~/tmp/scratch/xvfb-run.Dz5IxD’   ‘~/tmp/scratch/xvfb-run.FnFv2X’ ‘~/tmp/scratch/xvfb-run.G7Y9DT’   ‘~/tmp/scratch/xvfb-run.GmyWU9’ ‘~/tmp/scratch/xvfb-run.H4dbxB’   ‘~/tmp/scratch/xvfb-run.Lp5ZCD’ ‘~/tmp/scratch/xvfb-run.QT3xn2’   ‘~/tmp/scratch/xvfb-run.RD7fGg’ ‘~/tmp/scratch/xvfb-run.SYiBgM’   ‘~/tmp/scratch/xvfb-run.T2diuj’ ‘~/tmp/scratch/xvfb-run.T4Q7kz’   ‘~/tmp/scratch/xvfb-run.TSTZuu’ ‘~/tmp/scratch/xvfb-run.UMaT99’   ‘~/tmp/scratch/xvfb-run.UOAWUj’ ‘~/tmp/scratch/xvfb-run.UrDfou’   ‘~/tmp/scratch/xvfb-run.V3yQyD’ ‘~/tmp/scratch/xvfb-run.VXJW1c’   ‘~/tmp/scratch/xvfb-run.Ve2469’ ‘~/tmp/scratch/xvfb-run.W7sA5L’   ‘~/tmp/scratch/xvfb-run.WEYyEh’ ‘~/tmp/scratch/xvfb-run.Wrylpr’   ‘~/tmp/scratch/xvfb-run.ZJhPWH’ ‘~/tmp/scratch/xvfb-run.a3M8Ro’   ‘~/tmp/scratch/xvfb-run.aLJk7b’ ‘~/tmp/scratch/xvfb-run.bmLIKU’   ‘~/tmp/scratch/xvfb-run.bynkBm’ ‘~/tmp/scratch/xvfb-run.cWuFEz’   ‘~/tmp/scratch/xvfb-run.dNP2o4’ ‘~/tmp/scratch/xvfb-run.ddS1i3’   ‘~/tmp/scratch/xvfb-run.dlwlmk’ ‘~/tmp/scratch/xvfb-run.ec1ME1’   ‘~/tmp/scratch/xvfb-run.eiSQYU’ ‘~/tmp/scratch/xvfb-run.gEZStd’   ‘~/tmp/scratch/xvfb-run.hXH5SA’ ‘~/tmp/scratch/xvfb-run.hkdTha’   ‘~/tmp/scratch/xvfb-run.hsngws’ ‘~/tmp/scratch/xvfb-run.jhFCpk’   ‘~/tmp/scratch/xvfb-run.k9A7AA’ ‘~/tmp/scratch/xvfb-run.lY522o’   ‘~/tmp/scratch/xvfb-run.lcCzq8’ ‘~/tmp/scratch/xvfb-run.mYqd6K’   ‘~/tmp/scratch/xvfb-run.ml3T2z’ ‘~/tmp/scratch/xvfb-run.oLJ4vH’   ‘~/tmp/scratch/xvfb-run.oLVW2i’ ‘~/tmp/scratch/xvfb-run.pDGa2V’   ‘~/tmp/scratch/xvfb-run.pKGTTE’ ‘~/tmp/scratch/xvfb-run.pM3XMZ’   ‘~/tmp/scratch/xvfb-run.pcQeBq’ ‘~/tmp/scratch/xvfb-run.qOwjqY’   ‘~/tmp/scratch/xvfb-run.tA4Wfh’ ‘~/tmp/scratch/xvfb-run.tpbg3n’   ‘~/tmp/scratch/xvfb-run.twY7n8’ ‘~/tmp/scratch/xvfb-run.uUtqY5’   ‘~/tmp/scratch/xvfb-run.vLyrj4’ ‘~/tmp/scratch/xvfb-run.wmHwuk’   ‘~/tmp/scratch/xvfb-run.xEnPaL’ ‘~/tmp/scratch/xvfb-run.z5TihI’   ‘~/tmp/scratch/xvfb-run.zrCB3c’ ‘~/tmp/scratch/xvfb-run.zxdgTP’   ‘~/.cache/quarto/sass/sass.kv-shm’ ‘~/.cache/quarto/sass/sass.kv-wal’
• DONE

Status: 2 NOTEs