* installing *source* package 'phangorn' ...
** this is package 'phangorn' version '2.12.1'
** package 'phangorn' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 15.2.0'
using C++ compiler: 'g++.exe (GCC) 15.2.0'
g++ -std=gnu++20  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
gcc  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c dist.c -o dist.o
g++ -std=gnu++20  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c dupAtomMat.cpp -o dupAtomMat.o
g++ -std=gnu++20  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c fitch64.cpp -o fitch64.o
gcc  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c ml.c -o ml.o
gcc  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c phangorn.c -o phangorn.o
g++ -std=gnu++20  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c phangorn_utils.cpp -o phangorn_utils.o
gcc  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c sankoff.c -o sankoff.o
gcc  -I"C:/r_packages/rinst/include" -DNDEBUG  -I'C:/r_packages/pkgcheck/lib/Rcpp/include'   -I"C:/r_packages_ro/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c sprdist.c -o sprdist.o
g++ -std=gnu++20 -shared -s -static-libgcc -o phangorn.dll tmp.def RcppExports.o dist.o dupAtomMat.o fitch64.o ml.o phangorn.o phangorn_utils.o sankoff.o sprdist.o -LC:/r_packages/rinst/bin/x64 -lRblas -lgfortran -lquadmath -LC:/r_packages_ro/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/r_packages_ro/x86_64-w64-mingw32.static.posix/lib -LC:/r_packages/rinst/bin/x64 -lR
installing to C:/r_packages/pkgcheck/CRAN/phangorn/phangorn.Rcheck/00LOCK-phangorn/00new/phangorn/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phangorn)