Package: anglemania
URL: https://github.com/BIMSBbioinfo/anglemania/
Title: Feature Extraction for scRNA-seq Dataset Integration
Version: 0.99.7
Description: anglemania extracts genes from multi-batch scRNA-seq experiments for downstream dataset integration. It shows improvement over the conventional usage of highly-variable genes for many integration tasks. We leverage gene-gene correlations that are stable across batches to identify biologically informative genes which are less affected by batch effects. Currently, its main use is for single-cell RNA-seq dataset integration, but it can be applied for other multi-batch downstream analyses such as NMF.
Authors@R: c(
    person("Aaron", "Kollotzek", email = "aaron.kollotzek@mdc-berlin.de", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0009-7142-4015")),
    person("Vedran", "Franke", email = "vedran.franke@mdc-berlin.de", role = c("aut"),
           comment = c(ORCID = "0000-0003-3606-6792")),
    person("Artem", "Baranovskii", email = "artem.baranowsky@gmail.com", role = c("aut")),
    person("Altuna", "Akalin", email = "altuna.akalin@mdc-berlin.de", role = "aut"),
    person("SFB1588", role = "fnd", comment = "Funded by the DFG – Deutsche Forschungsgemeinschaft")
  )
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: Rcpp, rmio, bigstatsr
Depends: R (>= 4.5.0)
Imports: bigparallelr, bigstatsr, checkmate, digest, dplyr, Matrix,
        pbapply, S4Vectors, SingleCellExperiment, stats,
        SummarizedExperiment, tidyr, withr
Suggests: batchelor, BiocStyle, bluster, knitr, magick, matrixStats,
        patchwork, RcppArmadillo, rmarkdown, scater, scran, Seurat,
        splatter, testthat (>= 3.0.0), UpSetR
VignetteBuilder: knitr
biocViews: SingleCell, BatchEffect, MultipleComparison,
        FeatureExtraction
BiocType: Software
Config/testthat/edition: 3
BugReports: https://github.com/BIMSBbioinfo/anglemania/issues
git_url: https://git.bioconductor.org/packages/anglemania
git_branch: devel
git_last_commit: ddf0fb8
git_last_commit_date: 2025-10-23
Repository: Bioconductor 3.22
Date/Publication: 2025-10-23
NeedsCompilation: yes
Packaged: 2025-10-23 20:26:17 UTC; biocbuild
Author: Aaron Kollotzek [aut, cre] (ORCID:
    <https://orcid.org/0009-0009-7142-4015>),
  Vedran Franke [aut] (ORCID: <https://orcid.org/0000-0003-3606-6792>),
  Artem Baranovskii [aut],
  Altuna Akalin [aut],
  SFB1588 [fnd] (Funded by the DFG – Deutsche Forschungsgemeinschaft)
Maintainer: Aaron Kollotzek <aaron.kollotzek@mdc-berlin.de>
Built: R 4.6.0; x86_64-w64-mingw32; 2025-10-29 20:34:56 UTC; windows
Archs: x64
