bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
6ca1c741603c8a26f40bc7955f52693f *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
9da9826b6ca1027ee9f2aa59edf16cbc *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
0a417073ec16b745732085bff61c8a3c *Meta/hsearch.rds
0098e33182e97f4975f0e22720d674a3 *Meta/links.rds
c01f5c799eb38631b86fe18fefcfe366 *Meta/nsInfo.rds
d91fff3d81d233a518bba40ba16ca72a *Meta/package.rds
cef5c1e2744c475783788936272fd4ed *Meta/vignette.rds
fc869ee2ea4207aedc3b58907a28f0af *NAMESPACE
306e9d00a9336f77705552752b8873ce *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
e3860c3d97ab0bd6032738a855e37454 *R/GenomicAlignments.rdb
b20105571f239138667e13f2ac03c556 *R/GenomicAlignments.rdx
e099f894c81b0cb14abf1dd95d6e6edc *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
cd4b5afd79b89ee550c6196c2a9c95ca *doc/GenomicAlignmentsIntroduction.pdf
e67d3665e733ff5e39e4bfca86f02556 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
d89ae496c29d21a40a0ff86f63d117ac *doc/OverlapEncodings.pdf
ce6b7e63648a74109c4e351265c9eb26 *doc/WorkingWithAlignedNucleotides.R
5e284095ceea6b18ee2bb1a59c19b8f4 *doc/WorkingWithAlignedNucleotides.Rmd
688bceba846d154876a4b391e70e1c13 *doc/WorkingWithAlignedNucleotides.html
5d0c08f747978c6d65754da534909dd8 *doc/index.html
459876f6a6baca934fcf6c9af7a5b17e *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
73f8f238fecc240565f30a287bfd84ab *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
10259c85be90a108d689ddb70063ff20 *help/AnIndex
fb20a02a704a143a709916dbf38f8020 *help/GenomicAlignments.rdb
8f03077a34fe20f98d6b8e949d2a1523 *help/GenomicAlignments.rdx
16bef17ed2d1d2b505b16909073dc406 *help/aliases.rds
6613f65c6cda37b6e34e8e81433a6625 *help/paths.rds
f5229bdefc3541b9aca262fe9e2f0c4f *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
c16fa252d5b1b6397bb2a71f668db678 *libs/x64/GenomicAlignments.dll
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
4bcd8177a9a9003a0c3a606a332682f5 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
fff74f636e12162e8d287c1ff1537716 *unitTests/test_summarizeOverlaps-methods.R
