* using log directory 'C:/msys64/home/tomas/utf/ucrt64/inst_all/adaptsmoFMRI.Rcheck' * using R Under development (unstable) (2020-06-23 r78739) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'adaptsmoFMRI/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'adaptsmoFMRI' version '1.1' * checking package namespace information ... OK * checking package dependencies ... NOTE Depends: includes the non-default packages: 'Matrix', 'coda', 'mvtnorm', 'MCMCpack', 'spatstat', 'parallel' Adding so many packages to the search path is excessive and importing selectively is preferable. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'adaptsmoFMRI' can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' calls to packages already attached by Depends: 'MCMCpack' 'Matrix' 'coda' 'mvtnorm' 'parallel' 'spatstat' Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE adaptiveGMRF: no visible global function definition for 'as' adaptiveGMRF: no visible global function definition for 'rnorm' adaptiveGMRF: no visible global function definition for 'rgamma' adaptiveGMRF: no visible global function definition for 'runif' adaptiveGMRF: no visible global function definition for 'median' adaptiveGMRF: no visible binding for global variable 'median' adaptiveGMRF2COVAR: no visible global function definition for 'as' adaptiveGMRF2COVAR: no visible global function definition for 'rnorm' adaptiveGMRF2COVAR: no visible global function definition for 'rgamma' adaptiveGMRF2COVAR : drawWeights.Var1: no visible global function definition for 'rgamma' adaptiveGMRF2COVAR : drawWeights.Var1: no visible global function definition for 'runif' adaptiveGMRF2COVAR : drawWeights.Var2: no visible global function definition for 'rgamma' adaptiveGMRF2COVAR : drawWeights.Var2: no visible global function definition for 'runif' adaptiveGMRF2COVAR: no visible global function definition for 'mcparallel' adaptiveGMRF2COVAR: no visible global function definition for 'mccollect' adaptiveGMRF2COVAR: no visible global function definition for 'median' adaptiveGMRF2COVAR: no visible binding for global variable 'median' sim.adaptiveGMRF: no visible global function definition for 'as' sim.adaptiveGMRF: no visible global function definition for 'rnorm' sim.adaptiveGMRF: no visible global function definition for 'rgamma' sim.adaptiveGMRF: no visible global function definition for 'runif' sim.adaptiveGMRF: no visible global function definition for 'median' sim.adaptiveGMRF2COVAR: no visible global function definition for 'as' sim.adaptiveGMRF2COVAR: no visible global function definition for 'rnorm' sim.adaptiveGMRF2COVAR: no visible global function definition for 'rgamma' sim.adaptiveGMRF2COVAR : drawWeights.Var1: no visible global function definition for 'rgamma' sim.adaptiveGMRF2COVAR : drawWeights.Var1: no visible global function definition for 'runif' sim.adaptiveGMRF2COVAR : drawWeights.Var2: no visible global function definition for 'rgamma' sim.adaptiveGMRF2COVAR : drawWeights.Var2: no visible global function definition for 'runif' sim.adaptiveGMRF2COVAR: no visible global function definition for 'mcparallel' sim.adaptiveGMRF2COVAR: no visible global function definition for 'mccollect' sim.adaptiveGMRF2COVAR: no visible global function definition for 'median' sim.fmri: no visible global function definition for 'as' sim.fmri: no visible global function definition for 'rnorm' sim.fmri2COVAR: no visible global function definition for 'as' sim.fmri2COVAR: no visible global function definition for 'rnorm' sim.weightsplot: no visible binding for global variable 'median' weightsplot: no visible binding for global variable 'median' Undefined global functions or variables: as mccollect mcparallel median rgamma rnorm runif Consider adding importFrom("methods", "as") importFrom("stats", "median", "rgamma", "rnorm", "runif") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/msys64/home/tomas/utf/ucrt64/inst_all/adaptsmoFMRI.Rcheck/00check.log' for details.