* using log directory 'C:/msys64/home/tomas/utf/ucrt64/inst_all/SoDA.Rcheck' * using R Under development (unstable) (2020-06-23 r78739) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'SoDA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SoDA' version '1.0-6' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SoDA' can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... NOTE Warning: no function found corresponding to methods exports from 'SoDA' for: 'show' A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. Missing or unexported object: 'base::WHAT' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Call with DUP: .Fortran("GEODISTV", as.double(lat1), as.double(lon1), as.double(lat2), as.double(lon2), dist = double(nok), as.integer(nok), DUP = DUP, PACKAGE = "SoDA") DUP is no longer supported and will be ignored. * checking R code for possible problems ... NOTE .functionDocEl: no visible global function definition for 'elNamed' .isFunctionDoc: no visible global function definition for 'elNamed' .makeStrictEnv: no visible global function definition for 'getGeneric' .makeStrictEnv: no visible global function definition for 'getGroupMembers' .sourceAsDemo: no visible global function definition for 'new' binaryRep: no visible global function definition for 'new' demoSource: no visible global function definition for 'is' dropFormula: no visible global function definition for 'terms' dropFormula: no visible global function definition for 'as.formula' dropModel: no visible global function definition for 'update' dropModel: no visible global function definition for 'resid' exampleFiles: no visible global function definition for 'data' exampleFiles: no visible global function definition for 'menu' jitterXY: no visible global function definition for 'runif' localRFiles: no visible global function definition for 'menu' packageAdd: no visible global function definition for 'is' packageAdd: no visible global function definition for 'metaNameUndo' packageAdd: no visible global function definition for 'packageSlot<-' packageAdd: no visible global function definition for 'promptMethods' packageAdd: no visible global function definition for 'promptClass' promptAll: no visible binding for global variable 'elNamed' promptAll: no visible global function definition for 'elNamed<-' randomSlippage: no visible global function definition for 'runif' recoverHandler: no visible global function definition for 'recover' resetSeed: no visible global function definition for 'is' scanGPSTrack: no visible global function definition for 'new' showCall: no visible global function definition for 'is' showLanguage: no visible global function definition for 'showDefault' simulationResult: no visible global function definition for 'new' strictOp: no visible global function definition for 'getGeneric' plot,track3-missing: no visible global function definition for 'callNextMethod' show,randomGeneratorState: no visible global function definition for 'callNextMethod' show,simulationResult: no visible global function definition for 'show' Undefined global functions or variables: as.formula callNextMethod data elNamed elNamed<- getGeneric getGroupMembers is menu metaNameUndo new packageSlot<- promptClass promptMethods recover resid runif show showDefault terms update Consider adding importFrom("methods", "callNextMethod", "elNamed", "elNamed<-", "getGeneric", "getGroupMembers", "is", "metaNameUndo", "new", "packageSlot<-", "promptClass", "promptMethods", "show", "showDefault") importFrom("stats", "as.formula", "resid", "runif", "terms", "update") importFrom("utils", "data", "menu", "recover") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'chunksAdd.R' OK * checking PDF version of manual ... OK * DONE Status: 5 NOTEs See 'C:/msys64/home/tomas/utf/ucrt64/inst_all/SoDA.Rcheck/00check.log' for details.