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| bWGR-package | Bayesian Whole-Genome Regression |
| BayesA | MCMC Whole-genome Regression |
| BayesA2 | MCMC Whole-genome Regression |
| BayesB | MCMC Whole-genome Regression |
| BayesB2 | MCMC Whole-genome Regression |
| BayesC | MCMC Whole-genome Regression |
| BayesCpi | MCMC Whole-genome Regression |
| BayesDpi | MCMC Whole-genome Regression |
| BayesL | MCMC Whole-genome Regression |
| BayesRR | MCMC Whole-genome Regression |
| BayesRR2 | MCMC Whole-genome Regression |
| bWGR | Bayesian Whole-Genome Regression |
| chr | Tetra-seed Pods |
| CNT | Additional tools |
| emBA | Expectation-Maximization WGR |
| emBB | Expectation-Maximization WGR |
| emBC | Expectation-Maximization WGR |
| emBL | Expectation-Maximization WGR |
| emCV | Expectation-Maximization WGR |
| emDE | Expectation-Maximization WGR |
| emEN | Expectation-Maximization WGR |
| emGWA | Additional tools |
| emML | Expectation-Maximization WGR |
| emML2 | Expectation-Maximization WGR |
| emRR | Expectation-Maximization WGR |
| fam | Tetra-seed Pods |
| GAU | Additional tools |
| gen | Tetra-seed Pods |
| GRM | Additional tools |
| GSEN | MCMC Whole-genome Regression |
| Hmat | Additional tools |
| IMP | Additional tools |
| KMUP | MCMC Whole-genome Regression |
| KMUP2 | MCMC Whole-genome Regression |
| markov | Additional tools |
| mcmcCV | MCMC Whole-genome Regression |
| mixed | Mixed model solver |
| mkr | Multivariate Regression |
| mkr2X | Multivariate Regression |
| mrr | Multivariate Regression |
| mrr2X | Multivariate Regression |
| mrrFast | Multivariate Regression |
| mrrR | Multivariate Regression |
| mtgsru | Mixed model solver |
| mtmixed | Mixed model solver |
| SibZ | Additional tools |
| SPC | Additional tools |
| SPM | Additional tools |
| tpod | Tetra-seed Pods |
| wgr | MCMC Whole-genome Regression |
| y | Tetra-seed Pods |