Error(s) in re-building vignettes:
--- re-building ‘custom.Rmd’ using rmarkdown

Quitting from custom.Rmd:84-105 [cid]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `PairScorer()`:
! object '_TreeDist_cpp_mutual_clustering' not found
---
Backtrace:
     ▆
  1. └─TreeSearch::TreeSearch(...)
  2.   └─TreeSearch::EdgeListSearch(...)
  3.     └─global TreeScorer(edgeList[[1]], edgeList[[2]], dataset, ...)
  4.       └─TreeDist::ClusteringInfoDistance(startTree, tmpTree)
  5.         └─TreeDist::MutualClusteringInfo(...)
  6.           └─TreeDist::CalculateTreeDistance(...)
  7.             └─TreeDist:::.SplitDistanceOneOne(...)
  8.               └─TreeDist (local) Func(...)
  9.                 └─TreeDist::GeneralizedRF(...)
 10.                   └─TreeDist (local) PairScorer(splits1, splits2, nTip, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'custom.Rmd' failed with diagnostics:
object '_TreeDist_cpp_mutual_clustering' not found
--- failed re-building ‘custom.Rmd’

--- re-building ‘getting-started.Rmd’ using rmarkdown
--- finished re-building ‘getting-started.Rmd’

--- re-building ‘profile-scores.Rmd’ using rmarkdown
--- finished re-building ‘profile-scores.Rmd’

--- re-building ‘profile.Rmd’ using rmarkdown
--- finished re-building ‘profile.Rmd’

--- re-building ‘tree-search.Rmd’ using rmarkdown

Quitting from tree-search.Rmd:102-115 [map-search]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `PairScorer()`:
! object '_TreeDist_cpp_mutual_clustering' not found
---
Backtrace:
     ▆
  1. └─TreeDist::ClusteringInfoDistance(bestTrees)
  2.   └─TreeDist::MutualClusteringInfo(...)
  3.     └─TreeDist::CalculateTreeDistance(...)
  4.       └─TreeDist:::.SplitDistanceAllPairs(...)
  5.         ├─base::structure(...)
  6.         └─base::apply(is, 2, .CliPairDist)
  7.           └─TreeDist (local) FUN(newX[, i], ...)
  8.             └─TreeDist (local) .PairDist(i)
  9.               └─TreeDist (local) Func(...)
 10.                 └─TreeDist::GeneralizedRF(...)
 11.                   └─TreeDist (local) PairScorer(splits1, splits2, nTip, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tree-search.Rmd' failed with diagnostics:
object '_TreeDist_cpp_mutual_clustering' not found
--- failed re-building ‘tree-search.Rmd’

--- re-building ‘tree-space.Rmd’ using rmarkdown

Quitting from tree-space.Rmd:93-141 [exploring-consensus]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `consensus_info()`:
! object '_TreeDist_consensus_info' not found
---
Backtrace:
    ▆
 1. └─Rogue::QuickRogue(trees, p = majority)
 2.   └─TreeDist::ConsensusInfo(trees, info = info, p = p, check.tips = FALSE)
 3.     └─TreeDist:::consensus_info(trees, mode == 1L, p = safeP)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tree-space.Rmd' failed with diagnostics:
object '_TreeDist_consensus_info' not found
--- failed re-building ‘tree-space.Rmd’

SUMMARY: processing the following files failed:
  ‘custom.Rmd’ ‘tree-search.Rmd’ ‘tree-space.Rmd’

Error: Vignette re-building failed.
Execution halted