Running ‘betamix.R’ [15s/40s]
  Comparing ‘betamix.Rout’ to ‘betamix.Rout.save’ ...
15d14
< There were 50 or more warnings (use warnings() to see the first 50)
  Running ‘betatree.R’
  Comparing ‘betatree.Rout’ to ‘betatree.Rout.save’ ...
20,28d19
< Warning messages:
< 1: In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
< 2: In structure(rep.int(NA_integer_, length(olevels)), .Names = olevels) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
< 3: In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
< 4: In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
  Running ‘bias.R’ [4s/11s]
  Comparing ‘bias.Rout’ to ‘bias.Rout.save’ ...
12,14d11
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
16,18d12
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
20,22d13
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
61,63d51
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
65,67d52
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
69,71d53
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
103,105d84
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
107,109d85
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.
111,113d86
< Warning message:
< In structure(marg_e, .Names = names(y)) :
<   Replacing special names '.Names' is deprecated; use 'names' instead.