Running 'testthat.R' [26m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(dockerfiler)
  > 
  > test_check("dockerfiler")
  i Please wait while we compute system requirements...
  ! Optional package `pillar` is not available for pak.
    Use `pak::pak_install_extra()` to install optional packages.
    Use `options(pak.no_extra_messages = TRUE)` to suppress this message.
  
  ✔ Updated metadata database: 3.61 MB in 15 files.
  
  ℹ R 4.6 x86_64-w64-mingw32 packages are missing from CRAN: Failed to connect to bioconductor.statistik.tu-dortmund.de port 443 after 300007 ms: Couldn't connect to server and Failed to connect to bioconductor.statistik.tu-dortmund.de port 443 after 300001 ms: Couldn't connect to server
  ℹ source packages are missing from CRAN: Failed to connect to bioconductor.statistik.tu-dortmund.de port 443 after 300007 ms: Couldn't connect to server and Failed to connect to bioconductor.statistik.tu-dortmund.de port 443 after 300001 ms: Couldn't connect to server
  ℹ Updating metadata database
  ✔ Updating metadata database ... done
  
  * .dockerignore already present, skipping its creation.
  * .dockerignore already present, skipping its creation.
  i Please wait while we compute system requirements...
  i Please wait while we compute system requirements...
  i Please wait while we compute system requirements...
  i Please wait while we compute system requirements...
  v Done
  * .dockerignore already present, skipping its creation.
  i Please wait while we compute system requirements...
  v Done
  v  dockerfiler_0.1.3.9000.tar.gz created.
  * .dockerignore already present, skipping its creation.
  i Please wait while we compute system requirements...
  v Done
  * ./R.utils_0.9.0.tar.gz were removed from folder
  v  R.utils_1.0.0.tar.gz created.
  Please check the created Dockerfile. 
   You might needed to add extra sysreqs.
  * .dockerignore already present, skipping its creation.
  * .dockerignore already present, skipping its creation.
  * .dockerignore already present, skipping its creation.
  * .dockerignore already present, skipping its creation.
  * .dockerignore already present, skipping its creation.
  * .dockerignore already present, skipping its creation.
  * .dockerignore already present, skipping its creation.
  > Pass the PAT at build time: `DOCKER_BUILDKIT=1 docker build --secret id=github_pat,env=GITHUB_PAT ...`
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = the most up to date version in the repos
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  Saving _problems/test-dock_from_renv-120.R
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = the most up to date version in the repos
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 1.2.3
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = the most up to date version in the repos
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = the most up to date version in the repos
  i Please wait while we compute system requirements...
  Fetching system dependencies for 55 package(s) records.
  i No sysreqs required
  v Done
  renv version = 1.2.3
  i Please wait while we compute system requirements...
  Fetching system dependencies for 55 package(s) records.
  i No sysreqs required
  v Done
  renv version = 1.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 55 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  > Pass the PAT at build time: `docker build --build-arg GITHUB_PAT=$GITHUB_PAT ...` (NB: the PAT will be visible in the resulting image metadata; use `github_pat = "secret"` for published images).
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  > Pass the PAT at build time: `DOCKER_BUILDKIT=1 docker build --secret id=github_pat,env=GITHUB_PAT ...`
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  renv version = 0.0.0
  renv version = 0.0.0
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.0.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 54 package(s) records.
  i No sysreqs required
  v Done
  renv version = 0.16.0
  i Please wait while we compute system requirements...
  Fetching system dependencies for 1 package(s) records.
  i No sysreqs required
  v Done
  i .dockerignore added to the .Rbuildignore file.
  * .dockerignore already present, skipping its creation.
  [ FAIL 5 | WARN 3 | SKIP 2 | PASS 343 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • On CRAN (2): 'test-dockerbuild.R:24:7', 'test-get_sysreqs.R:2:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-dock_from_desc.R:48:7'): dock_from_desc works ──────────────────
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error: ! error in pak subprocess
  Caused by error: 
  ! Could not solve package dependencies:
  * R6: Can't find package called R6.
  * attempt: Can't find package called attempt.
  * cli: Can't find package called cli.
  * covr: Can't find package called covr.
  * desc: Can't find package called desc.
  * fs: Can't find package called fs.
  * glue: Can't find package called glue.
  * jsonlite: Can't find package called jsonlite.
  * pkgbuild: Can't find package called pkgbuild.
  * remotes: Can't find package called remotes.
  * usethis: Can't find package called usethis.
  Backtrace:
      ▆
   1. └─dockerfiler::dock_from_desc(file.path(".", "DESCRIPTION__")) at test-dock_from_desc.R:48:7
   2.   ├─base::unique(get_sysreqs(packages = packages))
   3.   └─dockerfiler::get_sysreqs(packages = packages)
   4.     └─pak::pkg_sysreqs(pkg = all_deps, sysreqs_platform = "debian")
   5.       └─pak:::remote(...)
   6.         └─err$throw(res$error)
  ── Error ('test-dock_from_desc.R:302:7'): dock_from_desc emits no GITHUB_PAT plumbing by default ──
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error: ! error in pak subprocess
  Caused by error: 
  ! Could not solve package dependencies:
  * R6: Can't find package called R6.
  * attempt: Can't find package called attempt.
  * cli: Can't find package called cli.
  * covr: Can't find package called covr.
  * desc: Can't find package called desc.
  * fs: Can't find package called fs.
  * glue: Can't find package called glue.
  * jsonlite: Can't find package called jsonlite.
  * pkgbuild: Can't find package called pkgbuild.
  * remotes: Can't find package called remotes.
  * usethis: Can't find package called usethis.
  Backtrace:
      ▆
   1. └─dockerfiler::dock_from_desc(file.path(".", "DESCRIPTION__")) at test-dock_from_desc.R:302:7
   2.   ├─base::unique(get_sysreqs(packages = packages))
   3.   └─dockerfiler::get_sysreqs(packages = packages)
   4.     └─pak::pkg_sysreqs(pkg = all_deps, sysreqs_platform = "debian")
   5.       └─pak:::remote(...)
   6.         └─err$throw(res$error)
  ── Error ('test-dock_from_desc.R:310:7'): dock_from_desc emits ARG/ENV GITHUB_PAT when github_pat = 'build_arg' ──
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error: ! error in pak subprocess
  Caused by error: 
  ! Could not solve package dependencies:
  * R6: Can't find package called R6.
  * attempt: Can't find package called attempt.
  * cli: Can't find package called cli.
  * covr: Can't find package called covr.
  * desc: Can't find package called desc.
  * fs: Can't find package called fs.
  * glue: Can't find package called glue.
  * jsonlite: Can't find package called jsonlite.
  * pkgbuild: Can't find package called pkgbuild.
  * remotes: Can't find package called remotes.
  * usethis: Can't find package called usethis.
  Backtrace:
      ▆
   1. └─dockerfiler::dock_from_desc(...) at test-dock_from_desc.R:310:7
   2.   ├─base::unique(get_sysreqs(packages = packages))
   3.   └─dockerfiler::get_sysreqs(packages = packages)
   4.     └─pak::pkg_sysreqs(pkg = all_deps, sysreqs_platform = "debian")
   5.       └─pak:::remote(...)
   6.         └─err$throw(res$error)
  ── Error ('test-dock_from_desc.R:323:7'): dock_from_desc emits secret mounts when github_pat = 'secret' ──
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error: ! error in pak subprocess
  Caused by error: 
  ! Could not solve package dependencies:
  * R6: Can't find package called R6.
  * attempt: Can't find package called attempt.
  * cli: Can't find package called cli.
  * covr: Can't find package called covr.
  * desc: Can't find package called desc.
  * fs: Can't find package called fs.
  * glue: Can't find package called glue.
  * jsonlite: Can't find package called jsonlite.
  * pkgbuild: Can't find package called pkgbuild.
  * remotes: Can't find package called remotes.
  * usethis: Can't find package called usethis.
  Backtrace:
      ▆
   1. └─dockerfiler::dock_from_desc(...) at test-dock_from_desc.R:323:7
   2.   ├─base::unique(get_sysreqs(packages = packages))
   3.   └─dockerfiler::get_sysreqs(packages = packages)
   4.     └─pak::pkg_sysreqs(pkg = all_deps, sysreqs_platform = "debian")
   5.       └─pak:::remote(...)
   6.         └─err$throw(res$error)
  ── Failure ('test-dock_from_renv.R:120:3'): dock_from_renv works with full dependencies ──
  Expected `any(grepl("python3", out$Dockerfile))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 5 | WARN 3 | SKIP 2 | PASS 343 ]
  Error:
  ! Test failures.
  Execution halted