Running ‘rotations.R’ [137s/178s]
Running the tests in ‘tests/rotations.R’ failed.
Complete output:
  > #   Tests here only compare against values computed with GPArotation code,
  > #   to ensure the regular and DF versions give the same result
  > 
  > 
  >  Sys.getenv("R_LIBS")
  [1] "/data/gannet/ripley/R/packages/tests-devel/GPArotateDF.Rcheck:/data/gannet/ripley/R/test-dev:/data/gannet/ripley/R/test-BioCdata"
  >  library()
  Packages in library '/data/gannet/ripley/R/packages/tests-devel/GPArotateDF.Rcheck':
  
  GPArotateDF             Derivative Free Gradient Projection Factor
                          Rotation
  
  Packages in library '/data/gannet/ripley/R/test-dev':
  
  AATtools                Reliability and Scoring Routines for the
                          Approach-Avoidance Task
  ABACUS                  Apps Based Activities for Communicating and
                          Understanding Statistics
  ABC.RAP                 Array Based CpG Region Analysis Pipeline
  ABCDscores              Summary Scores of the Adolescent Brain
                          Cognitive Development (ABCD) Study
  ABCanalysis             Computed ABC Analysis
  ABCoptim                Implementation of Artificial Bee Colony (ABC)
                          Optimization
  ABHgenotypeR            Easy Visualization of ABH Genotypes
  ABM                     Agent Based Model Simulation Framework
  ABPS                    The Abnormal Blood Profile Score to Detect
                          Blood Doping
  ABRSQOL                 Quality-of-Life Solver for "Measuring Quality
                          of Life under Spatial Frictions"
  ABSurvTDC               Survival Analysis using Time Dependent
                          Covariate for Animal Breeding
  ACDm                    Tools for Autoregressive Conditional Duration
                          Models
  ACE.CoCo                Analysis of Correlated High-Dimensional
                          Expression (ACE) Data
  ACEP                    Análisis Computacional de Eventos de Protesta
  ACEsearch               'ACE' Search Engine API
  ACEsimFit               ACE Kin Pair Data Simulations and Model Fitting
  ACEt                    Estimating Dynamic Heritability and Twin Model
                          Comparison
  ACNE                    Affymetrix SNP Probe-Summarization using
                          Non-Negative Matrix Factorization
  ACSWR                   A Companion Package for the Book "A Course in
                          Statistics with R"
  ACTCD                   Asymptotic Classification Theory for Cognitive
                          Diagnosis
  ACV                     Optimal Out-of-Sample Forecast Evaluation and
                          Testing under Stationarity
  ACWR                    Acute Chronic Workload Ratio Calculation
  ADAPTS                  Automated Deconvolution Augmentation of
                          Profiles for Tissue Specific Cells
  ADCT                    Adaptive Design in Clinical Trials
  ADDT                    Analysis of Accelerated Destructive Degradation
                          Test Data
  ADER                    Data Analysis in Ecology
  ADGofTest               Anderson-Darling GoF test
  ADLP                    Accident and Development Period Adjusted Linear
                          Pools for Actuarial Stochastic Reserving
  ADMM                    Algorithms using Alternating Direction Method
                          of Multipliers
  ADP                     Adoption Probability, Triers and Users Rate of
                          a New Product
  ADPF                    Use Least Squares Polynomial Regression and
                          Statistical Testing to Improve Savitzky-Golay
  ADSIHT                  Adaptive Double Sparse Iterative Hard
                          Thresholding
  ADTSA                   Time Series Analysis
  ADVICE                  Automatic Direct Variable Selection via
                          Interrupted Coefficient Estimation
  AEDForecasting          Change Point Analysis in ARIMA Forecasting
  AEP                     Statistical Modelling for Asymmetric
                          Exponential Power Distribution
  AER                     Applied Econometrics with R
  AEenrich                Adverse Event Enrichment Tests
  AFFECT                  Accelerated Functional Failure Time Model with
                          Error-Contaminated Survival Times
  AFR                     Toolkit for Regression Analysis of Kazakhstan
                          Banking Sector Data
  AGD                     Analysis of Growth Data
  AGHmatrix               Relationship Matrices for Diploid and
                          Autopolyploid Species
  AGPRIS                  AGricultural PRoductivity in Space
  AHMbook                 Functions and Data for the Book 'Applied
                          Hierarchical Modeling in Ecology' Vols 1 and 2
  AHPGaussian             New Multicriteria Method: AHPGaussian
  AHPWR                   Compute Analytic Hierarchy Process
  AHPhybrid               AHP Hybrid Method
  AHPtools                Consistency in the Analytic Hierarchy Process
  AHSurv                  Flexible Parametric Accelerated Hazards Models
  AIBias                  Longitudinal Bias Auditing for Sequential
                          Decision Systems
  AICcmodavg              Model Selection and Multimodel Inference Based
                          on (Q)AIC(c)
  AID                     Box-Cox Power Transformation
  AIDA                    Analysis of Interval DAta
  AIFFtools               Read AIFF Files and Convert to WAVE Format
  AIGRA                   Agentic Item Generation, Review, and Analysis
  AIGovernance            Statistical Auditing and Governance Reporting
                          for Employment AI Systems
  AIPW                    Augmented Inverse Probability Weighting
  AIUQ                    Ab Initio Uncertainty Quantification
  AIscreenR               AI Screening Tools in R for Systematic
                          Reviewing
  ALDEx2                  Analysis Of Differential Abundance Taking
                          Sample and Scale Variation Into Account
  ALDEx3                  Linear Models for Sequence Count Data
  ALDqr                   Quantile Regression Using Asymmetric Laplace
                          Distribution
  ALFAM2                  Dynamic Model of Ammonia Emission from
                          Field-Applied Manure
  ALLSPICER               ALLelic Spectrum of Pleiotropy Informed
                          Correlated Effects
  ALS                     Multivariate Curve Resolution Alternating Least
                          Squares (MCR-ALS)
  ALSCPC                  Accelerated line search algorithm for
                          simultaneous orthogonal transformation of
                          several positive definite symmetric matrices to
                          nearly diagonal form.
  ALUES                   Agricultural Land Use Evaluation System
  ALassoSurvIC            Adaptive Lasso for the Cox Regression with
                          Interval Censored and Possibly Left Truncated
                          Data
  AMAPVox                 LiDAR Data Voxelisation
  AMCP                    A Model Comparison Perspective
  AMCTestmakeR            Generate LaTeX Code for Auto-Multiple-Choice
                          (AMC)
  AMDconfigurations       Geometric Analysis of Configurations in
                          High-Dimensional Spaces
  AMIM                    Compute the Adjusted Market Inefficiency
                          Measure
  AMISforInfectiousDiseases
                          Implement the AMIS Algorithm for Infectious
                          Disease Models
  AMModels                Adaptive Management Model Manager
  AMPLE                   Shiny Apps to Support Capacity Building on
                          Harvest Control Rules
  AMR                     Antimicrobial Resistance Data Analysis
  ANN2                    Artificial Neural Networks for Anomaly
                          Detection
  ANOFA                   Analyses of Frequency Data
  ANOPA                   Analyses of Proportions using Anscombe
                          Transform
  ANOVAIREVA              Interactive Document for Working with Analysis
                          of Variance
  ANOVAShiny              Interactive Document for Working with Analysis
                          of Variance
  ANOVAShiny2             Interactive Document for Working with Analysis
                          of Variance
  ANSM5                   Functions and Data for the Book "Applied
                          Nonparametric Statistical Methods", 5th Edition
  AOUSDOHtools            Analyzing AOU SDOH Survey Data
  AOV1R                   Inference in the Balanced One-Way ANOVA Model
                          with Random Factor
  AOboot                  Bootstrapping in Different One-Way and Two-Way
                          ANOVA
  APCI                    A New Age-Period-Cohort Model for Describing
                          and Investigating Inter-Cohort Differences and
                          Life Course Dynamics
  APCalign                Resolving Plant Taxon Names Using the
                          Australian Plant Census
  APCanalysis             Analysis of Unreplicated Orthogonal Experiments
                          using All Possible Comparisons
  APCinteraction          Nonparametric Interaction Tests in Balanced
                          Two-Way ANOVA Models
  APCtools                Routines for Descriptive and Model-Based APC
                          Analysis
  APFr                    Multiple Testing Approach using Average Power
                          Function (APF) and Bayes FDR Robust Estimation
  APIS                    Auto-Adaptive Parentage Inference Software
                          Tolerant to Missing Parents
  APPEstimation           Adjusted Prediction Model Performance
                          Estimation
  APRScenario             Structural Scenario Analysis for Bayesian
                          Structural Vector Autoregression Models
  APS                     Analysing Prediction Stability of
                          Non-Deterministic Prediction Models
  APTIcalc                Air Pollution Tolerance Index (APTI) Calculator
  APackOfTheClones        Visualization of Clonal Expansion for Single
                          Cell Immune Profiles
  AQEval                  Air Quality Evaluation
  AQLSchemes              Retrieving Acceptance Sampling Schemes
  AQuadtree               Confidentiality of Spatial Point Data
  AQuality                Water and Measurements Quality
  ARCHISSUR               Active Recovery of a Constrained and Hidden Set
                          by Stepwise Uncertainty Reduction Strategy
  ARCensReg               Fitting Univariate Censored Linear Regression
                          Model with Autoregressive Errors
  ARCokrig                Autoregressive Cokriging Models for
                          Multifidelity Codes
  ARDECO                  Annual Regional Database of the European
                          Commission (ARDECO)
  ARDL                    ARDL, ECM and Bounds-Test for Cointegration
  ARGOS                   Automatic Regression for Governing Equations
                          (ARGOS)
  ARHT                    Adaptable Regularized Hotelling's T^2 Test for
                          High-Dimensional Data
  ARIMAANN                Time Series Forecasting using ARIMA-ANN Hybrid
                          Model
  ARIbrain                All-Resolution Inference
  ARMALSTM                Fitting of Hybrid ARMA-LSTM Models
  ARPobservation          Tools for Simulating Direct Behavioral
                          Observation Recording Procedures Based on
                          Alternating Renewal Processes
  ARTofR                  To Insert Title, Divider, and Block of Comments
  ARTool                  Aligned Rank Transform
  ARTtransfer             Adaptive and Robust Pipeline for Transfer
                          Learning
  ARUtools                Management and Processing of Autonomous
                          Recording Unit (ARU) Data
  ASGS.foyer              Interface to the Australian Statistical
                          Geography Standard
  ASML                    Algorithm Portfolio Selection with Machine
                          Learning
  ASMap                   Linkage Map Construction using the MSTmap
                          Algorithm
  ASMbook                 Functions for the Book "Applied Statistical
                          Modeling for Ecologists"
  ASRgenomics             Complementary Genomic Functions
  ASSA                    Applied Singular Spectrum Analysis (ASSA)
  ASSISTant               Adaptive Subgroup Selection in Group Sequential
                          Trials
  AST                     Age-Spatial-Temporal Model
  ASV                     Stochastic Volatility Models with or without
                          Leverage
  ATAforecasting          Automatic Time Series Analysis and Forecasting
                          using the Ata Method
  ATE.ERROR               Estimating ATE with Misclassified Outcomes and
                          Mismeasured Covariates
  ATNr                    Run Allometric Trophic Networks Models
  ATQ                     Alert Time Quality - Evaluating Timely Epidemic
                          Metrics
  ATR                     Alternative Tree Representation
  ATbounds                Bounding Treatment Effects by Limited
                          Information Pooling
  AUC                     Threshold Independent Performance Measures for
                          Probabilistic Classifiers
  AUKtest                 Calculate the AUK Estimator
  AUtests                 Approximate Unconditional and Permutation Tests
  AV1R                    'AV1' Video Encoding for Biological Microscopy
                          Data
  AVGAS                   A Variable Selection using Genetic Algorithms
  AWR                     'AWS' Java 'SDK' for R
  AWR.Kinesis             Amazon 'Kinesis' Consumer Application for
                          Stream Processing
  AZIAD                   Analyzing Zero-Inflated and Zero-Altered Data
  AalenJohansen           Conditional Aalen-Johansen Estimation
  AbSolution              Interactive Feature-Based Analysis of AIRR-Seq
                          Data
  Ac3net                  Inferring Directional Conservative Causal Core
                          Gene Networks
  AcademicThemes          Colour Plots with Palettes from Academic
                          Institutions
  AccSamplingDesign       Acceptance Sampling Plans Design
  AccelStab               Accelerated Stability Kinetic Modelling
  AcceptReject            Acceptance-Rejection Method for Generating
                          Pseudo-Random Observations
  AcceptanceSampling      Creation and Evaluation of Acceptance Sampling
                          Plans
  Achilles                Achilles Data Source Characterization
  ActCR                   Extract Circadian Rhythms Metrics from
                          Actigraphy Data
  ActiveDriver            Finding Cancer Driver Proteins with Enriched
                          Mutations in Post-Translational Modification
                          Sites
  ActiveDriverWGS         A Driver Discovery Tool for Cancer Whole
                          Genomes
  ActiveLearning4SPM      Active Learning for Process Monitoring
  ActivePathways          Integrative Pathway Enrichment Analysis of
                          Multivariate Omics Data
  ActivityIndex           Activity Index Calculation using Raw
                          'Accelerometry' Data
  ActuarialM              Computation of Actuarial Measures Using Bell G
                          Family
  AcuityView              A Package for Displaying Visual Scenes as They
                          May Appear to an Animal with Lower Acuity
  AdIsMF                  Adsorption Isotherm Model Fitting
  AdMit                   Adaptive Mixture of Student-t Distributions
  AdaSampling             Adaptive Sampling for Positive Unlabeled and
                          Label Noise Learning
  AdapDiscom              Adaptive Sparse Regression for Block Missing
                          Multimodal Data
  AdapSamp                Adaptive Sampling Algorithms
  AdaptGauss              Gaussian Mixture Models (GMM)
  AdaptiveBoxplot         FDR(BH) Boxplot and FWER(Holm) Boxplot
  AddiVortes              (Bayesian) Additive Voronoi Tessellations
  AdequacyModel           Adequacy of Probabilistic Models and General
                          Purpose Optimization
  AdhereR                 Adherence to Medications
  AdhereRViz              Adherence to Medications
  AdmixPoly               Global and Local Admixture Inference in
                          Polyploids
  AdsorpR                 Adsorption Isotherm Models
  AdvBinomApps            Upper Clopper-Pearson Confidence Limits for
                          Burn-in Studies under Additional Available
                          Information
  AdvDif4                 Solving 1D Advection Bi-Flux Diffusion Equation
  AdvancedBasketballStats
                          Advanced Basketball Statistics
  AdverseEvents           'shiny' Application for Adverse Event Analysis
                          of 'OnCore' Data
  AeRobiology             A Computational Tool for Aerobiological Data
  AeroEvapR               Estimating Reservoir Evaporation via
                          Aerodynamic Approach
  AeroSampleR             Estimate Aerosol Particle Collection Through
                          Sample Lines
  AgeBandDecomposition    Age Band Decomposition Method for Tree Ring
                          Standardization
  AgePopDenom             Model Fine-Scale Age-Structured Population Data
                          using Open-Source Data
  AgeTopicModels          Inferring Age-Dependent Disease Topic from
                          Diagnosis Data
  AggregateR              Aggregate Numeric, Date and Categorical
                          Variables
  AgreementInterval       Agreement Interval of Two Measurement Methods
  AgriDiversiX            Agricultural Crop Diversification Indices
                          Analysis
  AgroR                   Experimental Statistics and Graphics for
                          Agricultural Sciences
  AgroReg                 Regression Analysis Linear and Nonlinear for
                          Agriculture
  AgroTech                Data Analysis of Pesticide Application
                          Technology
  AhoCorasickTrie         Fast Searching for Multiple Keywords in
                          Multiple Texts
  AiES                    Axon Integrity Evaluation System for Microscopy
                          Images
  AirExposure             Exposure Model to Air Pollutants Based on
                          Mobility and Daily Activities
  AirMonitor              Air Quality Data Analysis
  AirScreen               Feature Screening via Adaptive Iterative Ridge
                          (Air-HOLP and Air-OLS)
  AirportProblems         Analysis of Cost Allocation for Airport
                          Problems
  Ake                     Associated Kernel Estimations
  AlgDesign               Algorithmic Experimental Design
  AlgeriAPIs              Access Algerian Data via Public APIs
  AlignLV                 Multiple Group Item Response Theory Alignment
                          Helpers for 'lavaan' and 'mirt'
  AllMetrics              Calculating Multiple Performance Metrics of a
                          Prediction Model
  AlleleRetain            Allele Retention, Inbreeding, and Demography
  AlleleShift             Predict and Visualize Population-Level Changes
                          in Allele Frequencies in Response to Climate
                          Change
  AllelicSeries           Allelic Series Test
  Allspice                RNA-Seq Profile Classifier
  AlphaPart               Partition/Decomposition of Breeding Values by
                          Paths of Information
  AlphaSimR               Breeding Program Simulations
  AlteredPQR              Detection of Altered Protein Quantitative
                          Relationships
  Amelia                  A Program for Missing Data
  AmesHousing             The Ames Iowa Housing Data
  AmigaFFH                Commodore Amiga File Format Handler
  AmmoniaConcentration    Un-Ionized Ammonia Concentration
  AmoudSurv               Tractable Parametric Odds-Based Regression
                          Models
  AmpGram                 Prediction of Antimicrobial Peptides
  AmpliconDuo             Statistical Analysis of Amplicon Data of the
                          Same Sample to Identify Artefacts
  AmyloGram               Prediction of Amyloid Proteins
  Anaconda                Targeted Differential and Global Enrichment
                          Analysis of Taxonomic Rank by Shared Asvs
  Analitica               Exploratory Data Analysis, Group Comparison
                          Tools, and Other Procedures
  AnalyzeFMRI             Functions for Analysis of fMRI Datasets Stored
                          in the ANALYZE or 'NIFTI' Format
  AnanseSeurat            Construct ANANSE GRN-Analysis Seurat
  AncReg                  Ancestor Regression
  AnchorRegression        Perform AnchorRegression
  Andromeda               Asynchronous Disk-Based Representation of
                          Massive Data
  AnglerCreelSurveySimulation
                          Simulate a Bus Route Creel Survey of Anglers
  AnimalSequences         Analyse Animal Sequential Behaviour and
                          Communication
  AnnoProbe               Annotate the Gene Symbols for Probes in
                          Expression Array
  AnnotationBustR         Extract Subsequences from GenBank Annotations
  AnnotationDbi           Manipulation of SQLite-based annotations in
                          Bioconductor
  AnnotationFilter        Facilities for Filtering Bioconductor
                          Annotation Resources
  AnnotationForge         Tools for building SQLite-based annotation data
                          packages
  AnnotationHub           Client to access AnnotationHub resources
  AntAngioCOOL            Anti-Angiogenic Peptide Prediction
  AntClassify             Functional Guilds, Invasion Status, Endemism,
                          and Rarity of Ants
  AnthropMMD              An R Package for the Mean Measure of Divergence
                          (MMD)
  Anthropometry           Statistical Methods for Anthropometric Data
  AntibodyForests         Delineating Inter- And Intra-Antibody
                          Repertoire Evolution
  AntibodyTiters          Antibody Titer Analysis of Vaccinated Patients
  AntsNet                 Unified Simulation of Isomorphisms Between Ant
                          Colony Intelligence and Machine Learning
  AnxietySleep            Sleep Quality and Anxiety in Confinement
  Aoptbdtvc               A-Optimal Block Designs for Comparing Test
                          Treatments with Controls
  ApacheLogProcessor      Process the Apache Web Server Log Files
  AplosNCA                Use 'Aplos NCA API' for Pharmacokinetic
                          Analysis
  Apoderoides             Prioritize and Delete Erroneous Taxa in a Large
                          Phylogenetic Tree
  AppliedPredictiveModeling
                          Functions and Data Sets for 'Applied Predictive
                          Modeling'
  ApplyPolygenicScore     Utilities for the Application of a Polygenic
                          Score to a VCF
  AquaAnalytix            Water Quality Analysis
  AquaBEHER               Estimation and Prediction of Wet Season
                          Calendar and Soil Water Balance for Agriculture
  AquaEnv                 Integrated Development Toolbox for Aquatic
                          Chemical Model Generation
  AquaticLifeHistory      Life History Analysis Tools
  ArArRedux               Rigorous Data Reduction and Error Propagation
                          of Ar40 / Ar39 Data
  ArCo                    Artificial Counterfactual Package
  ArDec                   Time Series Autoregressive-Based Decomposition
  ArchaeoPhases           Post-Processing of Markov Chain Monte Carlo
                          Simulations for Chronological Modelling
  ArchaeoPhases.dataset   Data Sets for 'ArchaeoPhases' Vignettes
  ArchipelagoEngine       Spatial Weight Construction for Archipelagic
                          Geographies
  ArctosR                 An Interface to the 'Arctos' Database
  ArgentinAPI             Access Argentinian Data via APIs and Curated
                          Datasets
  Argentum                Access and Import WMS and WFS Data from
                          Argentine Organizations
  AriGaMyANNSVR           Hybrid ARIMA-GARCH and Two Specially Designed
                          ML-Based Models
  Arothron                Geometric Morphometric Methods and Virtual
                          Anthropology Tools
  ArrayExpress            Access the ArrayExpress Collection at EMBL-EBI
                          Biostudies and build Bioconductor data
                          structures: ExpressionSet, AffyBatch,
                          NChannelSet
  ArvindSt                Five Novel Stochastic Regression Models with
                          Arvind-Distributed Errors and Effects
  AsianOption             Asian Option Pricing under Price Impact
  AsioHeaders             'Asio' C++ Header Files
  AssetPricing            Optimal Pricing of Assets with Fixed Expiry
                          Date
  AssocBin                Measuring Association with Recursive Binning
  AssociationExplorer2    A User-Friendly 'shiny' Application for
                          Exploring Associations and Visual Patterns
  AssumpSure              'shiny' Application for Statistical Test
                          Assumption Checking and Guidance
  AsthmaNHANES            Asthma Data Sets from NHANES
  AsyK                    Kernel Density Estimation
  AsymmetricSORDs         Asymmetric Second Order Rotatable Designs
                          (AsymmetricSORDs)
  AsynchLong              Regression Analysis of Sparse Asynchronous
                          Longitudinal Data
  AteMeVs                 Average Treatment Effects with Measurement
                          Error and Variable Selection for Confounders
  Athlytics               Sports Physiology Analysis from Local 'Strava'
                          Data
  AtlasMaker              Make Multiple 'leaflet' Maps in 'Shiny'
  AtmChile                Download Air Quality and Meteorological
                          Information of Chile
  AudioScatter            Audiogram Scattergrams
  AurieLSHGaussian        Creates a Neighbourhood Using Locality
                          Sensitive Hashing for Gaussian Projections
  AustralianPoliticians   Provides Datasets About Australian Politicians
  AutoAds                 Advertisement Metrics Calculation
  AutoDeskR               An Interface to the 'AutoDesk' 'API' Platform
  AutoMLR                 Automated Multi-Outcome Machine Learning
                          Combination Models
  AutoNN                  Automatic Neural Network Modeling for Time
                          Series Forecasting
  AutoPlots               Creating Echarts Visualizations as Easy as
                          Possible
  AutoScore               An Interpretable Machine Learning-Based
                          Automatic Clinical Score Generator
  AutoStepwiseGLM         Builds Stepwise GLMs via Train and Test
                          Approach
  AutoTransQF             A Novel Automatic Shifted Log Transformation
  AutoWMM                 Perform the Weighted Multiplier Method on Trees
  Autoplotprotein         Development of Visualization Tools for Protein
                          Sequence
  AutoregressionMDE       Minimum Distance Estimation in Autoregressive
                          Model
  Autoseed                Retrieve Disease-Related Genes from Public
                          Sources
  AuxSurvey               Survey Analysis with Auxiliary Discretized
                          Variables
  AvInertia               Calculate the Inertial Properties of a Flying
                          Bird
  AzureAppInsights        Include Azure Application Insights in Shiny
                          Apps
  AzureAuth               Authentication Services for Azure Active
                          Directory
  AzureCognitive          Interface to Azure Cognitive Services
  AzureContainers         Interface to 'Container Instances', 'Docker
                          Registry' and 'Kubernetes' in 'Azure'
  AzureCosmosR            Interface to the 'Azure Cosmos DB' 'NoSQL'
                          Database Service
  AzureGraph              Simple Interface to 'Microsoft Graph'
  AzureKeyVault           Key and Secret Management in 'Azure'
  AzureKusto              Interface to 'Kusto'/'Azure Data Explorer'
  AzureQstor              Interface to 'Azure Queue Storage'
  AzureRMR                Interface to 'Azure Resource Manager'
  AzureStor               Storage Management in 'Azure'
  AzureTableStor          Interface to the Table Storage Service in
                          'Azure'
  AzureVM                 Virtual Machines in 'Azure'
  AzureVMmetadata         Interface to Azure Virtual Machine Instance
                          Metadata
  AzureVision             Interface to Azure Computer Vision Services
  BACCO                   Bayesian Analysis of Computer Code Output
                          (BACCO)
  BACprior                Choice of Omega in the BAC Algorithm
  BAGofT                  A Binary Regression Adaptive Goodness-of-Fit
                          Test (BAGofT)
  BALLI                   Expression RNA-Seq Data Analysis Based on
                          Linear Mixed Model
  BAMBI                   Bivariate Angular Mixture Models
  BAMMtools               Analysis and Visualization of Macroevolutionary
                          Dynamics on Phylogenetic Trees
  BANAM                   Bayesian Analysis of the Network
                          Autocorrelation Model
  BAQM                    Babson Analytics and Quantitative Methods Tools
  BAR                     Bayesian Adaptive Randomization
  BAREB                   A Bayesian Repulsive Biclustering Model for
                          Periodontal Data
  BART                    Bayesian Additive Regression Trees
  BAS                     Bayesian Variable Selection and Model Averaging
                          using Bayesian Adaptive Sampling
  BASS                    Bayesian Adaptive Spline Surfaces
  BASiNET                 Classification of RNA Sequences using Complex
                          Network Theory
  BASiNETEntropy          Classification of RNA Sequences using Complex
                          Network and Information Theory
  BAT                     Biodiversity Assessment Tools
  BATSS                   Bayesian Adaptive Trial Simulator Software
                          (BATSS) for Generalised Linear Models
  BAYSTAR                 On Bayesian Analysis of Threshold
                          Autoregressive Models
  BAwiR                   Analysis of Basketball Data
  BB                      Solving and Optimizing Large-Scale Nonlinear
                          Systems
  BBEST                   Bayesian Estimation of Incoherent Neutron
                          Scattering Backgrounds
  BBI                     Benthic Biotic Indices Calculation from
                          Composition Data
  BBmisc                  Miscellaneous Helper Functions for B. Bischl
  BCA1SG                  Block Coordinate Ascent with One-Step
                          Generalized Rosen Algorithm
  BCBCSF                  Bias-Corrected Bayesian Classification with
                          Selected Features
  BCC1997                 Calculation of Option Prices Based on a
                          Universal Solution
  BCClong                 Bayesian Consensus Clustering for Multiple
                          Longitudinal Features
  BCD                     Bivariate Distributions via Conditional
                          Specification
  BCDAG                   Bayesian Structure and Causal Learning of
                          Gaussian Directed Graphs
  BCEA                    Bayesian Cost Effectiveness Analysis
  BCEE                    The Bayesian Causal Effect Estimation Algorithm
  BCFM                    Bayesian Clustering Factor Models
  BCHM                    Clinical Trial Calculation Based on BCHM Design
  BCRA                    Breast Cancer Risk Assessment
  BCSreg                  Box-Cox Symmetric Regression for Non-Negative
                          Data
  BCgee                   Bias-Corrected Estimates for Generalized Linear
                          Models for Dependent Data
  BDAlgo                  Bloom Detecting Algorithm
  BDEsize                 Efficient Determination of Sample Size in
                          Balanced Design of Experiments
  BDWreg                  Bayesian Inference for Discrete Weibull
                          Regression
  BDgraph                 Bayesian Structure Learning in Graphical Models
                          using Birth-Death MCMC
  BEACH                   Biometric Exploratory Analysis Creation House
  BED                     Biological Entity Dictionary (BED)
  BEDASSLE                Quantifies Effects of Geo/Eco Distance on
                          Genetic Differentiation
  BEDMatrix               Extract Genotypes from a PLINK .bed File
  BEKKs                   Multivariate Conditional Volatility Modelling
                          and Forecasting
  BEMPdata                Access the Bangladesh Environmental Mobility
                          Panel Dataset
  BEND                    Bayesian Estimation of Nonlinear Data (BEND)
  BERTopic                Topic Modeling with 'BERTopic'
  BESTree                 Branch-Exclusive Splits Trees
  BET                     Binary Expansion Testing
  BElikelihood            Likelihood Method for Evaluating Bioequivalence
  BFF                     Bayes Factor Functions
  BFI                     Bayesian Federated Inference
  BFM                     Beta Factor Model
  BFS                     Get Data from the Swiss Federal Statistical
                          Office
  BFpack                  Flexible Bayes Factor Testing of Scientific
                          Expectations
  BGData                  A Suite of Packages for Analysis of Big Genomic
                          Data
  BGFD                    Bell-G and Complementary Bell-G Family of
                          Distributions
  BGGE                    Bayesian Genomic Linear Models Applied to GE
                          Genome Selection
  BGGM                    Bayesian Gaussian Graphical Models
  BGLR                    Bayesian Generalized Linear Regression
  BGPhazard               Markov Beta and Gamma Processes for Modeling
                          Hazard Rates
  BGVAR                   Bayesian Global Vector Autoregressions
  BGmisc                  An R Package for Extended Behavior Genetics
                          Analysis
  BH                      Boost C++ Header Files
  BHAI                    Estimate the Burden of Healthcare-Associated
                          Infections
  BHMSMAfMRI              Bayesian Hierarchical Multi-Subject Multiscale
                          Analysis of Functional MRI (fMRI) Data
  BHSBVAR                 Structural Bayesian Vector Autoregression
                          Models
  BI                      Blinding Assessment Indexes for Randomized,
                          Controlled, Clinical Trials
  BICORN                  Integrative Inference of De Novo Cis-Regulatory
                          Modules
  BIDistances             Bioinformatic Distances
  BIEN                    Tools for Accessing the Botanical Information
                          and Ecology Network Database
  BIFIEsurvey             Tools for Survey Statistics in Educational
                          Assessment
  BIGDAWG                 Case-Cotrol Analysis of Multi-Allelic Loci
  BIGL                    Biochemically Intuitive Generalized Loewe Model
  BIGr                    Breeding Insight Genomics Functions for
                          Polyploid and Diploid Species
  BINCOR                  Estimate the Correlation Between Two Irregular
                          Time Series
  BIOEFIC                 Relative Bioefficiency via Simultaneous
                          Regressions
  BIOMASS                 Estimating Aboveground Biomass and Its
                          Uncertainty in Tropical Forests
  BIOdry                  Multilevel Modeling of Dendroclimatical
                          Fluctuations
  BIS                     Programmatic Access to Bank for International
                          Settlements Data
  BISdata                 Download Data from the Bank for International
                          Settlements (BIS)
  BKP                     Beta Kernel Process Modeling
  BKT                     Bayesian Knowledge Tracing Model
  BKTR                    Bayesian Kernelized Tensor Regression
  BLA                     Boundary Line Analysis
  BLMEngineInR            Biotic Ligand Model Engine
  BLModel                 Black-Litterman Posterior Distribution
  BLOQ                    Methods to Impute and Analyze Data with BLOQ
                          Observations
  BLPestimatoR            Performs a BLP Demand Estimation
  BLR                     Bayesian Linear Regression
  BLRShiny                Interactive Document for Working with Binary
                          Logistic Regression Analysis
  BLRShiny2               Interactive Document for Working with Binary
                          Logistic Regression Analysis
  BLSM                    Bayesian Latent Space Model
  BLSloadR                Download Time Series Data from the U.S. Bureau
                          of Labor Statistics
  BMA                     Bayesian Model Averaging
  BMAmevt                 Multivariate Extremes: Bayesian Estimation of
                          the Spectral Measure
  BMEmapping              Spatial Interpolation using Bayesian Maximum
                          Entropy (BME)
  BMIselect               Bayesian MI-LASSO for Variable Selection on
                          Multiply-Imputed Datasets
  BMRMM                   An Implementation of the Bayesian Markov
                          (Renewal) Mixed Models
  BMS                     Bayesian Model Averaging Library
  BMT                     The BMT Distribution
  BMconcor                CONCOR for Structural- And Regular-Equivalence
                          Blockmodeling
  BMisc                   Miscellaneous Functions for Panel Data,
                          Quantiles, and Printing Results
  BNPTSclust              A Bayesian Nonparametric Algorithm for Time
                          Series Clustering
  BNPmix                  Bayesian Nonparametric Mixture Models
  BNSP                    Bayesian Non- And Semi-Parametric Model Fitting
  BNrich                  Pathway Enrichment Analysis Based on Bayesian
                          Network
  BOIN                    Bayesian Optimal INterval (BOIN) Design for
                          Single-Agent and Drug- Combination Phase I
                          Clinical Trials
  BOJ                     Interface to Bank of Japan Statistics
  BOLDconnectR            Retrieve, Transform and Analyze the Barcode of
                          Life Data Systems Data
  BOP2FE                  Bayesian Optimal Phase II Design with Futility
                          and Efficacy Stopping Boundaries
  BORG                    Bounded Outcome Risk Guard for Model Evaluation
  BPM                     Bayesian Purity Model to Estimate Tumor Purity
  BPrinStratTTE           Causal Effects in Principal Strata Defined by
                          Antidrug Antibodies
  BRACE                   Bias Reduction Through Analysis of Competing
                          Events (BRACE)
  BRACoD.R                BRACoD: Bayesian Regression Analysis of
                          Compositional Data
  BRCore                  A Unified Framework for Identification and
                          Ecological Interpretation of Microbial Data
                          from Bioenergy Research Centers
  BREADR                  Estimates Degrees of Relatedness (Up to the
                          Second Degree) for Extreme Low-Coverage Data
  BRETIGEA                Brain Cell Type Specific Gene Expression
                          Analysis
  BRINDA                  Computation of BRINDA Adjusted Micronutrient
                          Biomarkers for Inflammation
  BRISC                   Fast Inference for Large Spatial Datasets using
                          BRISC
  BRL                     Beta Record Linkage
  BRPL                    Methods for Bivariate Poverty Line Calculations
  BRRAT                   Bayesian Regression Robustness Assessment Test
  BRcal                   Boldness-Recalibration of Binary Events
  BSDA                    Basic Statistics and Data Analysis
  BSET                    A Bayesian Surrogate Evaluation Test
  BSGW                    Bayesian Survival Model with Lasso Shrinkage
                          Using Generalized Weibull Regression
  BSL                     Bayesian Synthetic Likelihood
  BSPADATA                Bayesian Proposal to Fit Spatial Econometric
                          Models
  BSPBSS                  Bayesian Spatial Blind Source Separation
  BSS                     Brownian Semistationary Processes
  BSSasymp                Asymptotic Covariance Matrices of Some BSS
                          Mixing and Unmixing Matrix Estimates
  BSSoverSpace            Blind Source Separation for Multivariate
                          Spatial Data using Eigen Analysis
  BSSprep                 Whitening Data as Preparation for Blind Source
                          Separation
  BSTFA                   Bayesian Spatio-Temporal Factor Analysis Model
  BSTZINB                 Association Among Disease Counts and
                          Socio-Environmental Factors
  BSW                     Fitting a Log-Binomial Model Using the
                          Bekhit–Schöpe–Wagenpfeil (BSW) Algorithm
  BSagri                  Safety Assessment in Agricultural Field Trials
  BSgenome                Software infrastructure for efficient
                          representation of full genomes and their SNPs
  BTIME                   Bayesian Hierarchical Models for Single-Cell
                          Protein Data
  BTLLasso                Modelling Heterogeneity in Paired Comparison
                          Data
  BTM                     Biterm Topic Models for Short Text
  BTSPAS                  Bayesian Time-Stratified Population Analysis
  BTSR                    Bounded Time Series Regression
  BTTL                    Bradley-Terry Transfer Learning
  BTWAR                   Butterworth-Induced Autoregressive Model
  BTYD                    Implementing BTYD Models with the Log Sum Exp
                          Patch
  BTdecayLasso            Bradley-Terry Model with Exponential Time
                          Decayed Log-Likelihood and Adaptive Lasso
  BTtest                  Estimate the Number of Factors in Large
                          Nonstationary Datasets
  BUCSS                   Bias and Uncertainty Corrected Sample Size
  BVAR                    Hierarchical Bayesian Vector Autoregression
  BVARverse               Tidy Bayesian Vector Autoregression
  BWGS                    BreedWheat Genomic Selection Pipeline
  BWStest                 Baumgartner Weiss Schindler Test of Equal
                          Distributions
  BaM                     Functions and Datasets for "Bayesian Methods: A
                          Social and Behavioral Sciences Approach"
  BaSTA                   Age-Specific Bayesian Survival Trajectory
                          Analysis from Incomplete Census or
                          Capture-Recapture/Recovery Data
  BaSkePro                Bayesian Model to Archaeological Faunal
                          Skeletal Profiles
  BacenAPI                Data Collection from the Central Bank of Brazil
  BagWhiskerPlot          Bag-and-Whisker Plot
  BalanceCheck            Balance Check for Multiple Covariates in
                          Matched Observational Studies
  BalancedSampling        Balanced and Spatially Balanced Sampling
  Ball                    Statistical Inference and Sure Independence
                          Screening via Ball Statistics
  BallMapper              The Ball Mapper Algorithm
  BarBorGradient          Function Minimum Approximator
  BarcodingR              Species Identification using DNA Barcodes
  Barnard                 Barnard's Unconditional Test
  BaseSet                 Working with Sets the Tidy Way
  BaseTempSeed            Estimation of Seed Germination Base Temperature
                          in Thermal Modelling
  BasketTrial             Bayesian Basket Trial Design and Analysis
  BasketballAnalyzeR      Analysis and Visualization of Basketball Data
  BatchExperiments        Statistical Experiments on Batch Computing
                          Clusters
  BatchGetSymbols         Downloads and Organizes Financial Data for
                          Multiple Tickers
  BatchJobs               Batch Computing with R
  BayLum                  Chronological Bayesian Models Integrating
                          Optically Stimulated Luminescence and
                          Radiocarbon Age Dating
  Bayenet                 Robust Bayesian Elastic Net
  BayesAT                 Bayesian Adaptive Trial
  BayesBP                 Bayesian Estimation using Bernstein Polynomial
                          Fits Rate Matrix
  BayesBinMix             Bayesian Estimation of Mixtures of Multivariate
                          Bernoulli Distributions
  BayesBrainMap           Estimate Brain Networks and Connectivity with
                          Population-Derived Priors
  BayesCACE               Bayesian Model for CACE Analysis
  BayesCPclust            A Bayesian Approach for Clustering
                          Constant-Wise Change-Point Data
  BayesCR                 Bayesian Analysis of Censored Regression Models
                          Under Scale Mixture of Skew Normal
                          Distributions
  BayesCTDesign           Two Arm Bayesian Clinical Trial Design with and
                          Without Historical Control Data
  BayesCVI                Bayesian Cluster Validity Index
  BayesChange             Bayesian Methods for Change Point Analysis
  BayesCombo              Bayesian Evidence Combination
  BayesDIP                Bayesian Decreasingly Informative Priors for
                          Early Termination Phase II Trials
  BayesDecon              Density Deconvolution Using Bayesian
                          Semiparametric Methods
  BayesDesign             Bayesian Single-Arm Design with Survival
                          Endpoints
  BayesDissolution        Bayesian Models for Dissolution Testing
  BayesERtools            Bayesian Exposure-Response Analysis Tools
  BayesESS                Determining Effective Sample Size
  BayesFBHborrow          Bayesian Dynamic Borrowing with Flexible
                          Baseline Hazard Function
  BayesFM                 Bayesian Inference for Factor Modeling
  BayesFactor             Computation of Bayes Factors for Common Designs
  BayesFluxR              Implementation of Bayesian Neural Networks
  BayesForge              Bayesian Inference using 'numpyro' and 'XLA'
  BayesGP                 Efficient Implementation of Gaussian Process in
                          Bayesian Hierarchical Models
  BayesGPfit              Fast Bayesian Gaussian Process Regression
                          Fitting
  BayesGWQS               Bayesian Grouped Weighted Quantile Sum
                          Regression
  BayesGmed               Bayesian Causal Mediation Analysis using 'Stan'
  BayesGrowth             Estimate Fish Growth Using MCMC Analysis
  BayesLCA                Bayesian Latent Class Analysis
  BayesLN                 Bayesian Inference for Log-Normal Data
  BayesLogit              PolyaGamma Sampling
  BayesMFSurv             Bayesian Misclassified-Failure Survival Model
  BayesMallows            Bayesian Preference Learning with the Mallows
                          Rank Model
  BayesMallowsSMC2        Nested Sequential Monte Carlo for the Bayesian
                          Mallows Model
  BayesMixSurv            Bayesian Mixture Survival Models using Additive
                          Mixture-of-Weibull Hazards, with Lasso
                          Shrinkage and Stratification
  BayesMoFo               Bayesian Mortality Forecasting
  BayesMortalityPlus      Bayesian Mortality Modelling
  BayesMultMeta           Bayesian Multivariate Meta-Analysis
  BayesMultiMode          Bayesian Mode Inference
  BayesNSGP               Bayesian Analysis of Non-Stationary Gaussian
                          Process Models
  BayesNetBP              Bayesian Network Belief Propagation
  BayesPET                Bayesian Prediction of Event Times for Blinded
                          Randomized Controlled Trials
  BayesPIM                Bayesian Prevalence-Incidence Mixture Model
  BayesPPD                Bayesian Power Prior Design
  BayesPPDSurv            Bayesian Power Prior Design for Survival Data
  BayesPPR                Bayesian Projection Pursuit Regression
  BayesPieceHazSelect     Variable Selection in a Hierarchical Bayesian
                          Model for a Hazard Function
  BayesPocket             Bayesian Causal Inference for Periodontal
                          Diseases in Longitudinal Studies
  BayesPostEst            Generate Postestimation Quantities for Bayesian
                          MCMC Estimation
  BayesPower              Sample Size and Power Calculation for Bayesian
                          Testing with Bayes Factor
  BayesProject            Fast Projection Direction for Multivariate
                          Changepoint Detection
  BayesRS                 Bayes Factors for Hierarchical Linear Models
                          with Continuous Predictors
  BayesRTMB               Bayesian Inference Using 'RTMB'
  BayesRegDTR             Bayesian Regression for Dynamic Treatment
                          Regimes
  BayesRep                Bayesian Analysis of Replication Studies
  BayesRepDesign          Bayesian Design of Replication Studies
  BayesS5                 Bayesian Variable Selection Using Simplified
                          Shotgun Stochastic Search with Screening (S5)
  BayesSIM                Integrated Interface of Bayesian Single Index
                          Models using 'nimble'
  BayesSUR                Bayesian Seemingly Unrelated Regression Models
                          in High-Dimensional Settings
  BayesSampling           Bayes Linear Estimators for Finite Population
  BayesSurvival           Bayesian Survival Analysis for Right Censored
                          Data
  BayesSurvive            Bayesian Survival Models for High-Dimensional
                          Data
  BayesTSM                Bayesian Progressive Three State Model with
                          Censoring Due to Intervention
  BayesTools              Tools for Bayesian Analyses
  BayesTree               Bayesian Additive Regression Trees
  BayesTreePrior          Bayesian Tree Prior Simulation
  BayesTwin               Bayesian Analysis of Item-Level Twin Data
  BayesVarSel             Bayes Factors, Model Choice and Variable
                          Selection in Linear Models
  BayesVolcano            Creating Volcano Plots from Bayesian Model
                          Posteriors
  BayesX                  R Utilities Accompanying the Software Package
                          BayesX
  BayesXsrc               Distribution of the 'BayesX' C++ Sources
  BayesfMRI               Spatial Bayesian Methods for Task Functional
                          MRI Studies
  BayesianDEB             Bayesian Dynamic Energy Budget Modelling
  BayesianDisaggregation
                          Bayesian Methods for Economic Data
                          Disaggregation
  BayesianFitForecast     Bayesian Parameter Estimation and Forecasting
                          for Epidemiological Models
  BayesianInference       Bayesian Inference
  BayesianLasso           Bayesian Lasso Regression and Tools for the
                          Lasso Distribution
  BayesianLaterality      Predict Brain Asymmetry Based on Handedness and
                          Dichotic Listening
  BayesianMCPMod          Simulate, Evaluate, and Analyze Dose Finding
                          Trials with Bayesian MCPMod
  BayesianMediationA      Bayesian Mediation Analysis
  BayesianNetwork         Bayesian Network Modeling and Analysis
  BayesianPlatformDesignTimeTrend
                          Simulate and Analyse Bayesian Platform Trial
                          with Time Trend
  BayesianPower           Sample Size and Power for Comparing Inequality
                          Constrained Hypotheses
  BayesianQDM             Bayesian Quantitative Decision-Making Framework
                          for Binary and Continuous Endpoints
  BayesianReasoning       Plot Positive and Negative Predictive Values
                          for Medical Tests
  BayesianTools           General-Purpose MCMC and SMC Samplers and Tools
                          for Bayesian Statistics
  Bayesiangammareg        Double Generalized Gamma Regression Models
  Bayesiantreg            Bayesian t Regression for Modeling Mean and
                          Scale Parameters
  Bayesrel                Bayesian Reliability Estimation
  Bchron                  Age-Depth Radiocarbon Modelling
  BeQut                   Bayesian Estimation for Quantile Regression
                          Mixed Models
  BeSS                    Best Subset Selection in Linear, Logistic and
                          CoxPH Models
  BeastJar                JAR Dependency for MCMC Using 'BEAST'
  BeeBDC                  Occurrence Data Cleaning
  Benchmarking            Benchmark and Frontier Analysis Using DEA and
                          SFA
  BenfordTests            Statistical Tests for Evaluating Conformity to
                          Benford's Law
  Bergm                   Bayesian Exponential Random Graph Models
  BerkeleyForestsAnalytics
                          Compute and Summarize Core Forest Metrics from
                          Field Data
  Bernadette              Bayesian Inference and Model Selection for
                          Stochastic Epidemics
  Bessel                  Computations and Approximations for Bessel
                          Functions
  Bestie                  Bayesian Estimation of Intervention Effects
  BetaBit                 Mini Games from Adventures of Beta and Bit
  BetaDanish              The Beta-Danish Distribution for Lifetime Data
                          Analysis
  BetaPASS                Calculate Power and Sample Size with Beta
                          Regression
  BetterReg               Better Statistics for OLS and Binomial Logistic
                          Regression
  BeviMed                 Bayesian Evaluation of Variant Involvement in
                          Mendelian Disease
  BeyondBenford           Compare the Goodness of Fit of Benford's and
                          Blondeau Da Silva's Digit Distributions to a
                          Given Dataset
  Bhat                    General Likelihood Exploration
  BiCausality             Binary Causality Inference Framework
  BiDAG                   Bayesian Inference for Directed Acyclic Graphs
  BiDimRegression         Calculates the Bidimensional Regression Between
                          Two 2D Configurations
  BiObjClass              Classification of Algorithms
  BiTSLS                  Bidirectional Two-Stage Least Squares
                          Estimation
  BiTrinA                 Binarization and Trinarization of
                          One-Dimensional Data
  BiVariAn                Bivariate Automatic Analysis
  BiasCorrector           A GUI to Correct Measurement Bias in DNA
                          Methylation Analyses
  BiasedUrn               Biased Urn Model Distributions
  BibPlots                Plot Functions for Use in Bibliometrics
  BifactorIndicesCalculator
                          Bifactor Indices Calculator
  BigDataPE               Secure and Intuitive Access to 'BigDataPE'
                          'API' Datasets
  BigDataStatMeth         Scalable Statistical Computing with HDF5-Backed
                          Matrices
  BigQuic                 Big Quadratic Inverse Covariance Estimation
  BigVAR                  Dimension Reduction Methods for Multivariate
                          Time Series
  BimodalIndex            The Bimodality Index
  BinGSD                  Calculate Boundaries and Conditional Power for
                          Single Arm Group Sequential Test with Binary
                          Endpoint
  BinMat                  Processes Binary Data Obtained from Fragment
                          Analysis (Such as AFLPs, ISSRs, and RFLPs)
  BinNonNor               Data Generation with Binary and Continuous
                          Non-Normal Components
  BinNor                  Simultaneous Generation of Multivariate Binary
                          and Normal Variates
  BinOrdNonNor            Concurrent Generation of Binary, Ordinal and
                          Continuous Data
  BinSegBstrap            Piecewise Smooth Regression by Bootstrapped
                          Binary Segmentation
  Binarize                Binarization of One-Dimensional Data
  BinaryDosage            Creates, Merges, and Reads Binary Dosage Files
  BinaryEMVS              Variable Selection for Binary Data Using the EM
                          Algorithm
  BinaryEPPM              Mean and Scale-Factor Modeling of Under- And
                          Over-Dispersed Binary Data
  BinaryReplicates        Dealing with Binary Replicates
  BinarybalancedCut       Threshold Cut Point of Probability for a Binary
                          Classifier Model
  BioCro                  Modular Crop Growth Simulations
  BioGSP                  Biological Graph Signal Processing for Spatial
                          Data Analysis
  BioIndex                Biological Indicators and Indices for MEDITS
                          Survey Data
  BioInsight              Filter and Plot RNA Biotypes
  BioM2                   Biologically Explainable Machine Learning
                          Framework
  BioMoR                  Bioinformatics Modeling with Recursion and
                          Autoencoder-Based Ensemble
  BioMonTools             Biomonitoring and Bioassessment Calculations
  BioNet                  Routines for the functional analysis of
                          biological networks
  BioPET                  Biomarker Prognostic Enrichment Tool
  BioPETsurv              Biomarker Prognostic Enrichment Tool for
                          Time-to-Event Trial
  BioPred                 An R Package for Biomarkers Analysis in
                          Precision Medicine
  BioProbability          Probability in Biostatistics
  BioRssay                Analyze Bioassays and Probit Graphs
  BioStatR                Initiation à La Statistique Avec R
  BioTIMEr                Tools to Use and Explore the 'BioTIME' Database
  BioThermR               Standardized Processing and Analysis of Thermal
                          Imaging Data in Animal Studies
  BioTrajectory           Image Processing Tools for Barnes Maze
                          Experiments
  BioUtils                Biological Data Analysis and Visualization
  BioVenn                 Create Area-Proportional Venn Diagrams from
                          Biological Lists
  BioVizSeq               Visualizing the Elements Within Bio-Sequences
  BioWorldR               A Curated Collection of Biodiversity and
                          Species Datasets and Utilities
  Biobase                 Biobase: Base functions for Bioconductor
  BiocBaseUtils           Utility and internal functions for Bioconductor
                          packages
  BiocCheck               Bioconductor-specific package checks
  BiocFileCache           Manage Files Across Sessions
  BiocGenerics            S4 generic functions used in Bioconductor
  BiocIO                  Standard Input and Output for Bioconductor
                          Packages
  BiocManager             Access the Bioconductor Project Package
                          Repository
  BiocNeighbors           Nearest Neighbor Detection for Bioconductor
                          Packages
  BiocParallel            Bioconductor facilities for parallel evaluation
  BiocSingular            Singular Value Decomposition for Bioconductor
                          Packages
  BiocStyle               Standard styles for vignettes and other
                          Bioconductor documents
  BiocVersion             Set the appropriate version of Bioconductor
                          packages
  Biodem                  Biodemography Functions
  BiodiversityR           Package for Community Ecology and Suitability
                          Analysis
  Bioi                    Biological Image Analysis
  Bios2cor                From Biological Sequences and Simulations to
                          Correlation Analysis
  BiostatsUHNplus         Nested Data Summary, Adverse Events and REDCap
  Biostrings              Efficient manipulation of biological strings
  BipartiteModularityMaximization
                          Partition Bipartite Network into
                          Non-Overlapping Biclusters by Optimizing
                          Bipartite Modularity
  BiplotML                Logistic Biplot Estimation Using Machine
                          Learning Algorithms
  BivGeo                  Basu-Dhar Bivariate Geometric Distribution
  BivLaplaceRL            Bivariate Laplace Transforms, Stochastic
                          Orders, and Entropy Measures in Reliability
  BivRec                  Bivariate Alternating Recurrent Event Data
                          Analysis
  BivRegBLS               Tolerance Interval and EIV Regression - Method
                          Comparison Studies
  BivUnifBin              Generation of Bivariate Uniform Data and Its
                          Relation to Bivariate Binary Data
  Bivariate.Pareto        Bivariate Pareto Models
  BlakerCI                Blaker's Binomial and Poisson Confidence Limits
  BlandAltmanLeh          Plots (Slightly Extended) Bland-Altman Plots
  BlanketStatsments       Build and Compare Statistical Models
  Blend                   Robust Bayesian Longitudinal Regularized
                          Semiparametric Mixed Models
  Blendstat               Joint Analysis of Experiments with Mixtures and
                          Random Effects
  BlockCov                Estimation of Large Block Covariance Matrices
  BlockMissingData        Integrating Multi-Source Block-Wise Missing
                          Data in Model Selection
  BlockmodelingGUI        GUI for the Generalised Blockmodeling of Valued
                          Networks
  BlockwiseRankTest       Block-Wise Rank in Similarity Graph Edge-Count
                          Two-Sample Test (BRISE)
  BlueCarbon              Estimation of Organic Carbon Stocks and
                          Sequestration Rates from Soil Core Data
  BlythStillCasellaCI     Blyth-Still-Casella Exact Binomial Confidence
                          Intervals
  BoSSA                   A Bunch of Structure and Sequence Analysis
  BoardGames              Board Games and Tools for Building Board Games
  Bolstad                 Functions for Elementary Bayesian Inference
  Bolstad2                Bolstad Functions
  BoltzMM                 Boltzmann Machines with MM Algorithms
  BonEV                   An Improved Multiple Testing Procedure for
                          Controlling False Discovery Rates
  BondValuation           Fixed Coupon Bond Valuation Allowing for Odd
                          Coupon Periods and Various Day Count
                          Conventions
  BoneDensityMapping      Maps Bone Densities from CT Scans to Surface
                          Models
  BoneProfileR            Tools to Study Bone Compactness
  BoolNet                 Construction, Simulation and Analysis of
                          Boolean Networks
  Boom                    Bayesian Object Oriented Modeling
  BoomSpikeSlab           MCMC for Spike and Slab Regression
  BoostMLR                Boosting for Multivariate Longitudinal
                          Responses
  BootMRMR                Bootstrap-MRMR Technique for Informative Gene
                          Selection
  BootPR                  Bootstrap Prediction Intervals and
                          Bias-Corrected Forecasting
  BootWPTOS               Test Stationarity using Bootstrap Wavelet
                          Packet Tests
  BootstrapQTL            Bootstrap cis-QTL Method that Corrects for the
                          Winner's Curse
  BootstrapTests          Bootstrap-Based Hypothesis Testing using
                          Different Resampling Schemes
  Boptbd                  Bayesian Optimal Block Designs
  Boruta                  Wrapper Algorithm for All Relevant Feature
                          Selection
  BosonSampling           Classical Boson Sampling
  BoundEdgeworth          Bound on the Error of the First-Order Edgeworth
                          Expansion
  BoundIRT                Fit Bounded Continuous Item Response Theory
                          Models to Data
  BoundaryStats           Boundary Overlap Statistics
  BoutrosLab.plotting.general
                          Functions to Create Publication-Quality Plots
  BradleyTerry2           Bradley-Terry Models
  BrainCon                Inference the Partial Correlations Based on
                          Time Series Data
  BrainNetTest            Hypothesis Testing for Populations of Brain
                          Networks
  BranchGLM               Efficient Best Subset Selection for GLMs via
                          Branch and Bound Algorithms
  Branching               Simulation and Estimation for Branching
                          Processes
  BrazilCrime             Accesses Brazilian Public Security Data from
                          SINESP Since 2015
  BrazilDataAPI           Access Brazilian Data via APIs and Curated
                          Datasets
  BrazilMet               Download and Processing of Automatic Weather
                          Stations (AWS) Data of INMET-Brazil
  BreakPoints             Identify Breakpoints in Series of Data
  Brobdingnag             Very Large Numbers in R
  BrokenAdaptiveRidge     Broken Adaptive Ridge Regression with Cyclops
  Brq                     Bayesian Analysis of Quantile Regression Models
  BsMD                    Bayes Screening and Model Discrimination
  Buddle                  A Deep Learning for Statistical Classification
                          and Regression Analysis with Random Effects
  BuildSys                System for Building and Debugging C/C++ Dynamic
                          Libraries
  BurStFin                Burns Statistics Financial
  BurStMisc               Burns Statistics Miscellaneous
  BusinessDuration        Calculates Business Duration Between Two Dates
  ButtR                   Download and Extract Data from the
                          'OzButterflies' Database
  BuyseTest               Generalized Pairwise Comparisons
  Bvalue                  B-Value and Empirical Equivalence Bound
  BwQuant                 Bandwidth Selectors for Local Linear Quantile
                          Regression
  C19dNUTS                Dataset of Regional COVID-19 Deaths per 100,000
                          Pop (NUTS)
  C443                    See a Forest for the Trees
  C50                     C5.0 Decision Trees and Rule-Based Models
  CA3variants             Three-Way Correspondence Analysis Variants
  CADF                    Customer Analytics Data Formatting
  CADFtest                A Package to Perform Covariate Augmented
                          Dickey-Fuller Unit Root Tests
  CAESAR.Suite            CAESAR: a Cross-Technology and Cross-Resolution
                          Framework for Spatial Omics Annotation
  CAGR                    Compound Annual Growth Rate
  CAISEr                  Comparison of Algorithms with Iterative Sample
                          Size Estimation
  CALANGO                 Comparative Analysis with Annotation-Based
                          Genomic Components
  CALF                    Coarse Approximation Linear Function
  CALIBERrfimpute         Multiple Imputation Using MICE and Random
                          Forest
  CANE                    Comprehensive Groups of Experiments Analysis
                          for Numerous Environments
  CAOP.RAA.2024           Official Administrative Map of the Azores (CAOP
                          2024)
  CARBayes                Spatial Generalised Linear Mixed Models for
                          Areal Unit Data
  CARBayesST              Spatio-Temporal Generalised Linear Mixed Models
                          for Areal Unit Data
  CARBayesdata            Data Used in the Vignettes Accompanying the
                          CARBayes and CARBayesST Packages
  CARM                    Covariate-Adjusted Adaptive Randomization via
                          Mahalanobis-Distance
  CARME                   CAR-MM Modelling in Stan
  CARMS                   Continuous Time Markov Rate Modeling for
                          Reliability Analysis
  CARRoT                  Predicting Categorical and Continuous Outcomes
                          Using One in Ten Rule
  CASCORE                 Covariate Assisted Spectral Clustering on
                          Ratios of Eigenvectors
  CASIdata                Datasets from Computer Age Statistical
                          Inference
  CASMI                   'CASMI'-Based Functions
  CAST                    'caret' Applications for Spatial-Temporal
                          Models
  CATAcode                Explore and Code Responses to
                          Check-All-that-Apply Survey Items
  CATT                    The Cochran-Armitage Trend Test
  CATTexact               Computation of the p-Value for the Exact
                          Conditional Cochran-Armitage Trend Test
  CAinterprTools          Graphical Aid in Correspondence Analysis
                          Interpretation and Significance Testings
  CAvariants              Correspondence Analysis Variants
  CB2                     CRISPR Pooled Screen Analysis using
                          Beta-Binomial Test
  CBAModel                Stochastic 3D Structure Model for
                          Binder-Conductive Additive Phase
  CBASSED50               Process CBASS-Derived PAM Data
  CBCgrps                 Compare Baseline Characteristics Between Groups
  CBPE                    Correlation-Based Penalized Estimators
  CBPS                    Covariate Balancing Propensity Score
  CBRT                    CBRT Data on Turkish Economy
  CBSr                    Fits Cubic Bezier Spline Functions to
                          Intertemporal and Risky Choice Data
  CBT                     Confidence Bound Target Algorithm
  CBTF                    Caught by the Fuzz! - A Minimalistic Fuzz-Test
                          Runner
  CBnetworkMA             Contrast-Based Bayesian Network Meta Analysis
  CC                      Control Charts
  CCA                     Canonical Correlation Analysis
  CCAMLRGIS               Antarctic Spatial Data Manipulation
  CCI                     Computational Test for Conditional Independence
  CCM                     Correlation Classification Method
  CCMMR                   Minimization of the Convex Clustering Loss
                          Function
  CCMnet                  Congruence Class Models for Networks
  CCP                     Significance Tests for Canonical Correlation
                          Analysis (CCA)
  CCSRfind                Convert ICD-10 Codes to CCSR Codes
  CCWeights               Perform Weighted Linear Regression for
                          Calibration Curve
  CCd                     The Cauchy-Cacoullos (Discrete Cauchy)
                          Distribution
  CDCPLACES               Access the 'CDC PLACES' API
  CDF                     Centroid Decision Forest for High-Dimensional
                          Classification
  CDFt                    Downscaling and Bias Correction via
                          Non-Parametric CDF-Transform
  CDGHMM                  Hidden Markov Models for Multivariate Panel
                          Data
  CDM                     Cognitive Diagnosis Modeling
  CDMConnector            Connect to an OMOP Common Data Model
  CDSE                    'Copernicus Data Space Ecosystem' API Wrapper
  CDSS                    Course-Dependent Skill Structures
  CDSim                   Simulating Climate Data for Research and
                          Modelling
  CDVI                    Cuddy-Della Valle Index for Capturing the
                          Instability in Time Series Data
  CDatanet                Econometrics of Network Data
  CDsampling              Constrained Sampling in Paid Research Studies
  CEACT                   Cost-Effectiveness Analysis Toolkit for
                          Clinical Trials
  CEC                     Cross-Entropy Clustering
  CEDA                    CRISPR Screen and Gene Expression Differential
                          Analysis
  CEDMr                   Capability-Ecological Developmental Model
                          (CEDM) Analysis
  CEEMDANML               CEEMDAN Decomposition Based Hybrid Machine
                          Learning Models
  CEGO                    Combinatorial Efficient Global Optimization
  CEOdata                 Datasets of the CEO (Centre d'Estudis d'Opinio)
                          for Opinion Polls in Catalonia
  CERFIT                  Causal Effect Random Forest of Interaction
                          Trees
  CEoptim                 Cross-Entropy R Package for Optimization
  CFAcoop                 Colony Formation Assay: Taking into Account
                          Cellular Cooperation
  CFC                     Cause-Specific Framework for Competing-Risk
                          Analysis
  CFF                     Simple Similarity for User-Based Collaborative
                          Filtering Systems
  CFM                     Analyzing Censored Factor Models
  CFO                     CFO-Type Designs in Phase I/II Clinical Trials
  CFilt                   Collaborative Filtering Models for
                          Recommendation Systems
  CFtime                  Using CF-Compliant Calendars with Climate
                          Projection Data
  CGE                     Computing General Equilibrium
  CGGP                    Composite Grid Gaussian Processes
  CGManalyzer             Continuous Glucose Monitoring Data Analyzer
  CGMissingDataR          Impute Missing Glucose Values in CGM Data
  CGNM                    Cluster Gauss-Newton Method
  CGP                     Composite Gaussian Process Models
  CGR                     Compound Growth Rate for Capturing the Growth
                          Rate Over the Period
  CHAPGWAS                CHAP-GWAS: Leveraging Chromosomal Haplotypes to
                          Improve Genome-Wide Association Studies
  CHEMIST                 Causal Inference with High-Dimensional
                          Error-Prone Covariates and Misclassified
                          Treatments
  CHMM                    Coupled Hidden Markov Models
  CHNCapitalStock         Compute Chinese Capital Stocks
  CHNOSZ                  Thermodynamic Calculations and Diagrams for
                          Geochemistry
  CHOIRBM                 Plots the CHOIR Body Map
  CIAAWconsensus          Isotope Ratio Meta-Analysis
  CIARA                   Cluster Independent Algorithm for Rare Cell
                          Types Identification
  CICA                    Clusterwise Independent Component Analysis
  CICI                    Causal Inference with Continuous (Multiple Time
                          Point) Interventions
  CIEE                    Estimating and Testing Direct Effects in
                          Directed Acyclic Graphs using Estimating
                          Equations
  CIM                     Compositional Impact of Migration
  CIMEHR                  Gaussian Clinically Informative Visiting and
                          Observation Processes in Electronic Health
                          Record (EHR) Data
  CIMTx                   Causal Inference for Multiple Treatments with a
                          Binary Outcome
  CINE                    Classification International Normalized of
                          Education
  CINID                   Curculionidae INstar IDentification
  CINNA                   Deciphering Central Informative Nodes in
                          Network Analysis
  CINmetrics              Calculate Chromosomal Instability Metrics
  CIPerm                  Computationally-Efficient Confidence Intervals
                          for Mean Shift from Permutation Methods
  CIS.DGLM                Covariates, Interaction, and Selection for DGLM
  CITAN                   CITation ANalysis Toolpack
  CITMIC                  Estimation of Cell Infiltration Based on Cell
                          Crosstalk
  CIfinder                Estimate the Confidence Intervals for
                          Predictive Values
  CIplot                  Functions to Plot Confidence Interval
  CIpostSelect            Confidence Interval Post-Selection of Variable
  CJAMP                   Copula-Based Joint Analysis of Multiple
                          Phenotypes
  CJIVE                   Canonical Joint and Individual Variation
                          Explained (CJIVE)
  CKAT                    Composite Kernel Association Test for
                          Pharmacogenetics Studies
  CKLRT                   Composite Kernel Machine Regression Based on
                          Likelihood Ratio Test
  CKNNRLD                 Clustering-Based K-Nearest Neighbor Regression
                          for Longitudinal Data
  CLA                     Critical Line Algorithm in Pure R
  CLAST                   Exact Confidence Limits after a Sequential
                          Trial
  CLIC                    The LIC for Distributed Cosine Regression
                          Analysis
  CLME                    Constrained Inference for Linear Mixed Effects
                          Models
  CLONETv2                Clonality Estimates in Tumor
  CLRtools                Diagnostic Tools for Logistic and Conditional
                          Logistic Regression
  CLSIEP15                Clinical and Laboratory Standards Institute
                          (CLSI) EP15-A3 Calculations
  CLUSTShiny              Interactive Document for Working with Cluster
                          Analysis
  CLVTools                Tools for Customer Lifetime Value Estimation
  CLimd                   Generating Rainfall Rasters from IMD NetCDF
                          Data
  CMAPSS                  Commercial Modular Aero-Propulsion System
                          Simulation Data Set
  CMF                     Collective Matrix Factorization
  CMFsurrogate            Calibrated Model Fusion Approach to Combine
                          Surrogate Markers
  CMGFM                   Covariate-Augumented Generalized Factor Model
  CMHNPA                  Cochran-Mantel-Haenszel and Nonparametric ANOVA
  CMHSU                   Mental Health Status, Substance Use Status and
                          their Concurrent Status in North American
                          Healthcare Administrative Databases
  CMIP6VisR               Visualization and Analysis of Coupled Model
                          Intercomparison Project, Phase-6 (CMIP6)
                          Hydroclimatic Data
  CMLS                    Constrained Multivariate Least Squares
  CMMs                    Compositional Mediation Model
  CMShiny                 Interactive Document for Working with Confusion
                          Matrix
  CMTFtoolbox             Create (Advanced) Coupled Matrix and Tensor
                          Factorization Models
  CMapViz                 Representation Tool For Output Of Connectivity
                          Map (CMap) Analysis
  CMatching               Matching Algorithms for Causal Inference with
                          Clustered Data
  CMplot                  Circle Manhattan Plot
  CNAIM                   Common Network Asset Indices Methodology
                          (CNAIM)
  CNID                    Get Basic Information from Chinese ID Number
  CNLTreg                 Complex-Valued Wavelet Lifting for Signal
                          Denoising
  CNLTtsa                 Complex-Valued Wavelet Lifting for Univariate
                          and Bivariate Time Series Analysis
  CNPS                    Nonparametric Statistics
  CNSigs                  Analysis of Copy Number Signatures
  CNVScope                A Versatile Toolkit for Copy Number Variation
                          Relationship Data Analysis and Visualization
  CNVreg                  CNV-Profile Regression for Copy Number Variants
                          Association Analysis with Penalized Regression
  CNprep                  Pre-Process DNA Copy Number (CN) Data for
                          Detection of CN Events
  COAP                    High-Dimensional Covariate-Augmented
                          Overdispersed Poisson Factor Model
  COINT                   Unit Root Tests with Structural Breaks and
                          Fully-Modified Estimators
  COINr                   Composite Indicator Construction and Analysis
  COLP                    Causal Discovery for Categorical Data with
                          Label Permutation
  COMBAT                  A Combined Association Test for Genes using
                          Summary Statistics
  COMBO                   Correcting Misclassified Binary Outcomes in
                          Association Studies
  COMIX                   Coarsened Mixtures of Hierarchical Skew Kernels
  COMMA                   Correcting Misclassified Mediation Analysis
  COMPoissonReg           Conway-Maxwell Poisson (COM-Poisson) Regression
  CONCUR                  Copy Number Profile Curve-Based Association
                          Test
  COR                     The COR for Optimal Subset Selection in
                          Distributed Estimation
  CORE                    Cores of Recurrent Events
  CORElearn               Classification, Regression and Feature
                          Evaluation
  CORPlot                 Cumulative Odds Ratio Plot
  COST                    Copula-Based Semiparametric Models for
                          Spatio-Temporal Data
  COUNT                   Functions, Data and Code for Count Data
  COVID19                 R Interface to COVID-19 Data Hub
  COVIDIBGE               Downloading, Reading and Analyzing PNAD COVID19
                          Microdata
  COveR                   Clustering with Overlaps
  CP                      Conditional Power Calculations
  CPBayes                 Bayesian Meta Analysis for Studying
                          Cross-Phenotype Genetic Associations
  CPC                     Implementation of Cluster-Polarization
                          Coefficient
  CPCAT                   The Closure Principle Computational Approach
                          Test
  CPE                     Concordance Probability Estimates in Survival
                          Analysis
  CPGLIB                  Competing Proximal Gradients Library
  CPMCGLM                 Correction of the P-Value after Multiple Coding
                          in Generalized Linear Models
  CPNCoverageAnalysis     Conceptual Properties Norming Studies as
                          Parameter Estimation
  CPP                     Composition of Probabilistic Preferences (CPP)
  CPoptim                 Convex Partition Optimisation
  CPsurv                  Nonparametric Change Point Estimation for
                          Survival Data
  CR2                     Compute Cluster Robust Standard Errors with
                          Degrees of Freedom Adjustments
  CRABS                   Congruent Rate Analyses in Birth-Death
                          Scenarios
  CRANsearcher            RStudio Addin for Searching Packages in CRAN
                          Database Based on Keywords
  CRE                     Interpretable Discovery and Inference of
                          Heterogeneous Treatment Effects
  CREAM                   Clustering of Genomic Regions Analysis Method
  CREDS                   Calibrated Ratio Estimator under Double
                          Sampling Design
  CRMetrics               Cell Ranger Output Filtering and Metrics
                          Visualization
  CRTConjoint             Conditional Randomization Testing (CRT)
                          Approach for Conjoint Analysis
  CRTSize                 Sample Size Estimation Functions for Cluster
                          Randomized Trials
  CRTgeeDR                Doubly Robust Inverse Probability Weighted
                          Augmented GEE Estimator
  CRTspat                 Workflow for Cluster Randomised Trials with
                          Spillover
  CRediTas                Generate CRediT Author Statements
  CSCNet                  Fitting and Tuning Regularized Cause-Specific
                          Cox Models with Elastic-Net Penalty
  CSDownscale             Statistical Downscaling of Climate Predictions
  CSESA                   CRISPR-Based Salmonella Enterica Serotype
                          Analyzer
  CSHShydRology           Canadian Hydrological Analyses
  CSIndicators            Climate Services' Indicators Based on
                          Sub-Seasonal to Decadal Predictions
  CSMES                   Cost-Sensitive Multi-Criteria Ensemble
                          Selection for Uncertain Cost Conditions
  CSTE                    Covariate Specific Treatment Effect (CSTE)
                          Curve
  CSTools                 Assessing Skill of Climate Forecasts on
                          Seasonal-to-Decadal Timescales
  CSclone                 Bayesian Nonparametric Modeling in R
  CSeQTL                  Cell Type-Specific Expression Quantitative
                          Trait Loci Mapping
  CSeqpat                 Frequent Contiguous Sequential Pattern Mining
                          of Text
  CSwR                    Companion to the Book "Computational Statistics
                          with R"
  CTD                     A Method for 'Connecting The Dots' in Weighted
                          Graphs
  CTE                     Constant Temperature Equivalent
  CTNote                  CTN Outcomes, Treatments, and Endpoints
  CTRing                  Density Profiles of Wood from CT Scan Images
  CTShiny                 Interactive Document for Working with
                          Classification Tree Analysis
  CTShiny2                Interactive Document for Working with
                          Classification Tree Analysis
  CTT                     Classical Test Theory Functions
  CTTShiny                Classical Test Theory via Shiny
  CTTvis                  Visualize Item Metrics of the Classical Test
                          Theory Framework
  CTxCC                   Multivariate Normal Mean Monitoring Through
                          Critical-to-X Control Chart
  CUB                     A Class of Mixture Models for Ordinal Data
  CUFF                    Charles's Utility Function using Formula
  CUMP                    Analyze Multivariate Phenotypes by Combining
                          Univariate Results
  CUSUMdesign             Compute Decision Interval and Average Run
                          Length for CUSUM Charts
  CUtools                 Clinical Utility Tools to Analyze a Predictive
                          Model
  CVD                     Color Vision Deficiencies
  CVST                    Fast Cross-Validation via Sequential Testing
  CVThresh                Level-Dependent Cross-Validation Thresholding
  CVXR                    Disciplined Convex Optimization
  CVglasso                Lasso Penalized Precision Matrix Estimation
  CVrisk                  Compute Risk Scores for Cardiovascular Diseases
  CWT                     Continuous Wavelet Transformation for
                          Spectroscopy
  CaDENCE                 Conditional Density Estimation Network
                          Construction and Evaluation
  CaMeA                   Causal Meta-Analysis for Aggregated Data
  CaPO4Sim                A Virtual Patient Simulator in the Context of
                          Calcium and Phosphate Homeostasis
  Cairo                   R Graphics Device using Cairo Graphics Library
                          for Creating High-Quality Bitmap (PNG, JPEG,
                          TIFF), Vector (PDF, SVG, PostScript) and
                          Display (X11 and Win32) Output
  CalSim                  The Calibration Simplex
  CalcThemAll.PRM         Calculate Pesticide Risk Metric (PRM) Values
                          from Multiple Pesticides...Calc Them All
  CalibratR               Mapping ML Scores to Calibrated Predictions
  CalibrateSSB            Weighting and Estimation for Panel Data with
                          Non-Response
  CalibrationCurves       Calibration Performance
  CamelUp                 'CamelUp' Board Game as a Teaching Aid for
                          Introductory Statistics
  CancerEvolutionVisualization
                          Publication Quality Phylogenetic Tree Plots
  CancerGram              Prediction of Anticancer Peptides
  Canek                   Batch Correction of Single Cell Transcriptome
                          Data
  CanonicalFamilyExtra    Extra Canonical Link Family Objects for
                          Generalized Linear Models
  Capsule                 Comprehensive Reproducibility Framework for R
                          and Bioinformatics Analysis
  CardiacDP               Automated Cardiac Data Processing via ACF, GA &
                          Tracking Index
  CardioCurveR            Nonlinear Modeling of R-R Interval Dynamics
  CardioDataSets          A Comprehensive Collection of Cardiovascular
                          and Heart Disease Datasets
  CareDensity             Calculate the Care Density or Fragmented Care
                          Density Given a Patient-Sharing Network
  CarletonStats           Functions for Statistics Classes at Carleton
                          College
  Carlson                 Carlson Elliptic Integrals and Incomplete
                          Elliptic Integrals
  Cascade                 Selection, Reverse-Engineering and Prediction
                          in Cascade Networks
  CascadeData             Experimental Data of Cascade Experiments in
                          Genomics
  CaseBasedReasoning      Case Based Reasoning
  CaseCohortCoxSurvival   Case-Cohort Cox Survival Inference
  CatDataAnalysis         Datasets for Categorical Data Analysis by
                          Agresti
  CatDyn                  Fishery Stock Assessment by Catch Dynamics
                          Models
  CatEncoders             Encoders for Categorical Variables
  CatPredi                Optimal Categorisation of Continuous Variables
                          in Prediction Models
  CatReg                  Solution Paths for Linear and Logistic
                          Regression Models with Categorical Predictors,
                          with SCOPE Penalty
  CatastRo                Interface to the Spanish 'Catastro' Web
                          Services
  Category                Category Analysis
  CausCor                 Calculate Correlations and Estimate Causality
  CausalGPS               Matching on Generalized Propensity Scores with
                          Continuous Exposures
  CausalImpact            Inferring Causal Effects using Bayesian
                          Structural Time-Series Models
  CausalMBSTS             MBSTS Models for Causal Inference and
                          Forecasting
  CausalMetaR             Causally Interpretable Meta-Analysis
  CausalMixGPD            Bayesian Nonparametric Conditional Density
                          Modeling in Causal Inference and Clustering
                          with a Heavy-Tail Extension
  CausalModels            Causal Inference Modeling for Estimation of
                          Causal Effects
  CausalQueries           Make, Update, and Query Binary Causal Models
  CausalSpline            Nonlinear Causal Dose-Response Estimation via
                          Splines
  CautiousLearning        Control Charts with Guaranteed In-Control
                          Performance and Cautious Parameters Learning
  CePa                    Centrality-Based Pathway Enrichment
  CeRNASeek               Identification and Analysis of ceRNA Regulation
  CellDEEP                Cell DiffErential Expression by Pooling
                          ('CellDEEP')
  CellWindX               Marker Gene Analysis and Visualization for
                          Single-Cell Data
  CenBAR                  Broken Adaptive Ridge AFT Model with Censored
                          Data
  CensMFM                 Finite Mixture of Multivariate Censored/Missing
                          Data
  CensRegSMSN             Censored Linear Regression Models under
                          Heavy‑tailed Distributions
  CensSpatial             Censored Spatial Models
  Census2016              Data from the Australian Census 2016
  CepReg                  A Cepstral Model for Covariate-Dependent Time
                          Series
  CepalStatR              Access to the 'CEPALSTAT API'
  CerioliOutlierDetection
                          Outlier Detection Using the Iterated RMCD
                          Method of Cerioli (2010)
  Certara.DarwinReporter
                          Data Visualization Utilities for 'pyDarwin'
                          Machine Learning Pharmacometric Model
                          Development
  Certara.ModelResults    Generate Diagnostics for Pharmacometric Models
                          Using 'shiny'
  Certara.NLME8           Utilities for Certara's Nonlinear Mixed-Effects
                          Modeling Engine
  Certara.R               Easily Install Pharmacometric Packages and
                          Shiny Applications Developed by Certara
  Certara.RDarwin         Interface for 'pyDarwin' Machine Learning
                          Pharmacometric Model Development
  Certara.RsNLME          Pharmacometric Modeling
  Certara.RsNLME.ModelBuilder
                          Pharmacometric Model Building Using 'shiny'
  Certara.RsNLME.ModelExecutor
                          Execute Pharmacometric Models Using 'shiny'
  Certara.VPCResults      Generate Visual Predictive Checks (VPC) Using
                          'shiny'
  Certara.Xpose.NLME      Enhances 'xpose' Diagnostics for Pharmacometric
                          Models from 'Certara.RsNLME' and Phoenix NLME
  ChIPseeker              ChIPseeker for ChIP peak Annotation,
                          Comparison, and Visualization
  ChainLadder             Statistical Methods and Models for Claims
                          Reserving in General Insurance
  ChangePointTaylor       Identify Changes in Mean
  ChangepointTesting      Change Point Estimation for Clustered Signals
  ChannelAttribution      Markov Model for Online Multi-Channel
                          Attribution
  ChannelAttributionApp   Shiny Web Application for the Multichannel
                          Attribution Problem
  Chaos01                 0-1 Test for Chaos
  ChaosGame               Chaos Game
  CharAnalysis            Peak Detection and Fire History from
                          Sediment-Charcoal Records
  Characterization        Implement Descriptive Studies Using the Common
                          Data Model
  ChauBoxplot             Chauvenet-Type Boxplot
  CheckDigit              Calculate and Verify Check Digits
  ChemmineR               Cheminformatics Toolkit for R
  ChemoSpec               Exploratory Chemometrics for Spectroscopy
  ChemoSpec2D             Exploratory Chemometrics for 2D Spectroscopy
  ChemoSpecUtils          Functions Supporting Packages ChemoSpec and
                          ChemoSpec2D
  ChernoffDist            Chernoff's Distribution
  ChessGmooG              FIDE Chess Players Ratings for 2015 and 2020
  ChestVolume             Estimate the Chest Volume with Markers Data
  ChileDataAPI            Access Chilean Data via APIs and Curated
                          Datasets
  ChillModels             Processing Chill and Heat Models for Temperate
                          Fruit Trees
  ChinAPIs                Access Chinese Data via Public APIs and Curated
                          Datasets
  ChineseNames            Chinese Name Database 1930-2008
  ChoiceModelR            Choice Modeling in R
  CholWishart             Cholesky Decomposition of the Wishart
                          Distribution
  CimpleG                 A Method to Identify Single CpG Sites for
                          Classification and Deconvolution
  CircMLE                 Maximum Likelihood Analysis of Circular Data
  CircNNTSR               Statistical Analysis of Circular Data using
                          Nonnegative Trigonometric Sums (NNTS) Models
  CircNNTSRSymmetric      Circular Data using Symmetric NNTS Models
  CircNNTSRaxial          Axial Data using NNTS Models
  CircNNTSRmult           Multivariate Circular Data using MNNTS Models
  CircOutlier             Detection of Outliers in Circular-Circular
                          Regression
  CircStats               Circular Statistics, from "Topics in Circular
                          Statistics" (2001)
  CircaCP                 Sleep and Circadian Metrics Estimation from
                          Actigraphy Data
  CirceR                  Construct Cohort Inclusion and Restriction
                          Criteria Expressions
  CirclesIntersections    Algorithm for Computation of the Intersection
                          Areas of N Circles
  CircularBoxplots        Grouped Boxplots for Circular Data
  CircularDDM             Circular Drift-Diffusion Model
  CircularRegression      Circular Regression Models
  CircularSilhouette      Fast Silhouette on Circular or Linear Data
                          Clusters
  CiteSource              Data-Driven Search Strategy Development and
                          Evidence Synthesis Reporting
  Ckmeans.1d.dp           Optimal, Fast, and Reproducible Univariate
                          Clustering
  Claddis                 Measuring Morphological Diversity and
                          Evolutionary Tempo
  ClaimsProblems          Analysis of Conflicting Claims
  ClamR                   Time Series Modeling for Climate Change Proxies
  ClassComparison         Classes and Methods for "Class Comparison"
                          Problems on Microarrays
  ClassDiscovery          Classes and Methods for "Class Discovery" with
                          Microarrays or Proteomics
  ClassificationEnsembles
                          Automatically Builds 12 Classification Models
                          (6 Individual and 6 Ensembles of Models) from
                          Classification Data
  ClassifyITS             Fungal Assignment Pipeline
  CleanBSequences         Curing of Biological Sequences
  Cleanet                 Automated Doublet Detection and Classification
                          for Cytometry Data
  CleaningValidation      Cleaning Validation Functions for
                          Pharmaceutical Cleaning Process
  ClickClust              Model-Based Clustering of Categorical Sequences
  ClickHouseHTTP          A Simple HTTP Database Interface to
                          'ClickHouse'
  CliftLRD                Complex-Valued Wavelet Lifting Estimators of
                          the Hurst Exponent for Irregularly Sampled Time
                          Series
  ClimClass               Climate Classification According to Several
                          Indices
  ClimInd                 Climate Indices
  ClimMobTools            API Client for the 'ClimMob' Platform
  ClimProjDiags           Set of Tools to Compute Various Climate Indices
  ClimaRep                Estimating Climate Representativeness
  ClinSigMeasures         Clinical Significance Measures
  ClinTrialPredict        Predicting and Simulating Clinical Trial with
                          Time-to-Event Endpoint
  ClinicalTrialSummary    Summary Measures for Clinical Trials with
                          Survival Outcomes
  ClinicalUtilityRecal    Recalibration Methods for Improved Clinical
                          Utility of Risk Scores
  CliquePercolation       Clique Percolation for Networks
  CloneSeeker             Seeking and Finding Clones in Copy Number and
                          Sequencing Data
  CluMP                   Clustering of Micro Panel Data
  ClueR                   Cluster Evaluation
  ClusBoot                Bootstrap a Clustering Solution to Establish
                          the Stability of the Clusters
  ClusPred                Simultaneous Semi-Parametric Estimation of
                          Clustering and Regression
  ClusROC                 ROC Analysis in Three-Class Classification
                          Problems for Clustered Data
  ClusTCR2                Identifying Similar T Cell Receptor
                          Hyper-Variable Sequences with 'ClusTCR2'
  ClusTorus               Prediction and Clustering on the Torus by
                          Conformal Prediction
  ClussCluster            Simultaneous Detection of Clusters and
                          Cluster-Specific Genes in High-Throughput
                          Transcriptome Data
  ClustAssess             Tools for Assessing Clustering
  ClustBlock              Clustering of Datasets
  ClustGeo                Hierarchical Clustering with Spatial
                          Constraints
  ClustImpute             K-Means Clustering with Build-in Missing Data
                          Imputation
  ClustMC                 Cluster-Based Multiple Comparisons
  ClustOfVar              Clustering of Variables
  ClustVarLV              Clustering of Variables Around Latent Variables
  ClusterBootstrap        Analyze Clustered Data using the Cluster
                          Bootstrap
  ClusterR                Gaussian Mixture Models, K-Means,
                          Mini-Batch-Kmeans, K-Medoids and Affinity
                          Propagation Clustering
  ClusterRankTest         Rank Tests for Clustered Data
  ClusterStability        Assessment of Stability of Individual Objects
                          or Clusters in Partitioning Solutions
  ClusterVAR              Fitting Latent Class Vector-Autoregressive
                          (VAR) Models
  ClusteredMutations      Location and Visualization of Clustered Somatic
                          Mutations
  Clustering              Techniques for Evaluating Clustering
  CoClust                 A Copula-Based Clustering Algorithm
  CoDaImpact              Interpreting CoDa Regression Models
  CoDaLoMic               Compositional Models to Longitudinal Microbiome
                          Data
  CoDiNA                  Co-Expression Differential Network Analysis
  CoFM                    Copula Factor Models
  CoImp                   Parametric and Nonparametric Copula-Based
                          Imputation Methods
  CoMiRe                  Convex Mixture Regression
  CoNI                    Correlation Guided Network Integration (CoNI)
  CoRpower                Power Calculations for Assessing Correlates of
                          Risk in Clinical Efficacy Trials
  CoSMoS                  Complete Stochastic Modelling Solution
  CoTiMA                  Continuous Time Meta-Analysis ('CoTiMA')
  CoalescentPhylo         Phylogenetics via Root Distances Method Under
                          the Coalescent
  CoastlineFD             Calculation of the Fractal Dimension of a
                          Coastline
  CodataGS                Genomic Prediction Using SNP Codata
  CodeDepends             Analysis of R Code for Reproducible Research
                          and Code Comprehension
  CodelistGenerator       Identify Relevant Clinical Codes and Evaluate
                          Their Use
  CohortCharacteristics   Summarise and Visualise Characteristics of
                          Patients in the OMOP CDM
  CohortConstructor       Build and Manipulate Study Cohorts Using a
                          Common Data Model
  CohortContrast          Enrichment Analysis of Clinically Relevant
                          Concepts in Common Data Model Cohort Data
  CohortGenerator         Cohort Generation for the OMOP Common Data
                          Model
  CohortMethod            Comparative Cohort Method with Large Scale
                          Propensity and Outcome Models
  CohortPlat              Simulation of Cohort Platform Trials for
                          Combination Treatments
  CohortSurvival          Estimate Survival from Common Data Model
                          Cohorts
  CohortSymmetry          Sequence Symmetry Analysis Using the
                          Observational Medical Outcomes Partnership
                          Common Data Model
  CoinMinD                Simultaneous Confidence Intervals for
                          Multinomial Proportions
  Coinprofile             Coincident Profile
  ColOpenData             Download Colombian Demographic, Climate and
                          Geospatial Data
  CollocInfer             Collocation Inference for Dynamic Systems
  ColombiAPI              Access Colombian Data via APIs and Curated
                          Datasets
  ColorNameR              Give Colors a Name
  Colossus                "Risk Model Regression and Analysis with
                          Complex Non-Linear Models"
  ComBatFamQC             Comprehensive Batch Effect Diagnostics and
                          Harmonization
  ComICS                  Computational Methods for Immune Cell-Type
                          Subsets
  ComRiskModel            Fitting of Complementary Risk Models
  CombinS                 Construction Methods for Series of PBIB Designs
                          via Combinatory Method S
  CombinePortfolio        Estimation of Optimal Portfolio Weights by
                          Combining Simple Portfolio Strategies
  CommEcol                Community Ecology Analyses
  CommKern                Network-Based Communities and Kernel Machine
                          Methods
  CommonDataModel         OMOP CDM DDL and Documentation Generator
  CommonJavaJars          Useful Libraries for Building a Java Based GUI
                          under R
  CommonMean.Copula       Common Mean Vector under Copula Models
  Comp2ROC                Compare Two ROC Curves that Intersect
  CompAREdesign           Statistical Functions for the Design of Studies
                          with Composite Endpoints
  CompClassMetrics        Classification Measures when Subclasses are
                          Involved
  CompDist                Multisection Composite Distributions
  CompExpDes              Designs for Computer Experimentations
  CompGR                  Complete Annual Growth Rate Generator
  CompModels              Pseudo Computer Models for Optimization
  CompPareto              Discrete Composite Distributions with Pareto
                          Tails
  CompQuadForm            Distribution Function of Quadratic Forms in
                          Normal Variables
  CompR                   Paired Comparison Data Analysis
  CompareCausalNetworks   Interface to Diverse Estimation Methods of
                          Causal Networks
  CompareMultipleModels   Finding the Best Model Using Eight Metrics
                          Values
  CompareTests            Correct for Verification Bias in Diagnostic
                          Accuracy & Agreement
  ComparisonSurv          Comparison of Survival Curves Between Two
                          Groups
  Compind                 Composite Indicators Functions
  ComplexHeatmap          Make Complex Heatmaps
  ComplexUpset            Create Complex UpSet Plots Using 'ggplot2'
                          Components
  CompositeReliability    Determine the Composite Reliability of a
                          Naturalistic, Unbalanced Dataset
  Compositional           Compositional Data Analysis
  CompositionalClust      Clustering with Compositional Data
  CompositionalHDDA       High Dimensional Discriminant Analysis with
                          Compositional Data
  CompositionalML         Machine Learning with Compositional Data
  CompositionalNAimp      Missing Value Imputation with Compositional
                          Data
  CompositionalRF         Multivariate Random Forest with Compositional
                          Responses
  CompositionalSR         Spatial Regression Models with Compositional
                          Data
  CompoundDb              Creating and Using (Chemical) Compound
                          Annotation Databases
  CompoundEvents          Statistical Modeling of Compound Events
  ComradesM               The Comrades Marathon 1921 to 2019
  ConFluxPro              Soil Gas Analysis and Flux Modeling
  ConNEcT                 Contingency Measure-Based Networks for Binary
                          Time Series
  ConSciR                 Tools for Conservation Science
  ConSpline               Partial Linear Least-Squares Regression using
                          Constrained Splines
  ConconiAnaerobicThresholdTest
                          Conconi Estimate of Anaerobic Threshold from a
                          TCX File
  ConcordanceTest         An Alternative to the Kruskal-Wallis Based on
                          the Kendall Tau Distance
  CondCopulas             Estimation and Inference for Conditional Copula
                          Models
  CondMVT                 Conditional Multivariate t Distribution,
                          Expectation Maximization Algorithm, and Its
                          Stochastic Variants
  CondiS                  Censored Data Imputation for Direct Modeling
  ConfMatrix              Confusion Matrix
  ConfidenceEllipse       Computation of 2D and 3D Elliptical Joint
                          Confidence Regions
  ConfigParser            Package to Parse an INI File, Including
                          Variable Interpolation
  ConformalSmallest       Efficient Tuning-Free Conformal Prediction
  ConfusionTableR         Confusion Matrix Toolset
  CongressData            A Functional Tool for 'CongressData'
  CongreveLamsdell2016    Distance Metrics for Trees Generated by
                          Congreve and Lamsdell
  Conigrave               Flexible Tools for Multiple Imputation
  ConjointChecks          Implementation of a Method to Check the
                          Cancellation Axioms of Additive Conjoint
                          Measurement
  ConnMatTools            Tools for Working with Connectivity Data
  ConnectednessApproach   Connectedness Approach
  Connection              Measures of Independence and Connection Without
                          Linear Models
  ConsRank                Compute the Median Ranking(s) According to the
                          Kemeny's Axiomatic Approach
  ConsRankClass           Classification and Clustering of Preference
                          Rankings
  ConsReg                 Fits Regression & ARMA Models Subject to
                          Constraints to the Coefficient
  ConsensusClusterPlus    ConsensusClusterPlus
  ConsensusClustering     Consensus Clustering
  ConsensusOPLS           Consensus OPLS for Multi-Block Data Fusion
  ContRespPP              Predictive Probability for a Continuous
                          Response with an ANOVA Structure
  ContaminatedMixt        Clustering and Classification with the
                          Contaminated Normal
  ContourFunctions        Create Contour Plots from Data or a Function
  ConvergenceClubs        Finding Convergence Clubs
  ConvergenceConcepts     Seeing Convergence Concepts in Action
  ConversationAlign       Process Text and Compute Linguistic Alignment
                          in Conversation Transcripts
  ConvertPar              Estimating IRT Parameters via Machine Learning
                          Algorithms
  Convolutioner           Convolution of Data
  CooRTweet               Coordinated Networks Detection on Social Media
  CooccurrenceAffinity    Affinity in Co-Occurrence Data
  CoopGame                Important Concepts of Cooperative Game Theory
  CoordinateCleaner       Automated Cleaning of Occurrence Records from
                          Biological Collections
  CopCTS                  Copula-Based Semiparametric Analysis for Time
                          Series Data with Detection Limits
  CopernicusClimate       Search Download and Handle Data from Copernicus
                          Climate Data Service
  CopernicusDEM           Copernicus Digital Elevation Models
  CopernicusDataspace     Search Download and Handle Data from the
                          Copernicus Data Space Ecosystem
  CopernicusMarine        Search Download and Handle Data from Copernicus
                          Marine Service Information
  Copula.Markov           Copula-Based Estimation and Statistical Process
                          Control for Serially Correlated Time Series
  Copula.Markov.survival
                          Copula Markov Model with Dependent Censoring
  Copula.surv             Analysis of Bivariate Survival Data Based on
                          Copulas
  CopulaCenR              Copula-Based Regression Models for Multivariate
                          Censored Data
  CopulaGAMM              Copula-Based Mixed Regression Models
  CopulaInference         Estimation and Goodness-of-Fit of Copula-Based
                          Models with Arbitrary Distributions
  CopulaREMADA            Copula Mixed Models for Multivariate
                          Meta-Analysis of Diagnostic Test Accuracy
                          Studies
  CopulaSCR               Analysis of Semi-Competing Risks Data Using
                          Copula-Based Models
  CorMID                  Correct Mass Isotopologue Distribution Vectors
  CoreMicrobiomeR         Identification of Core Microbiome
  CorrBin                 Nonparametrics with Clustered Binary and
                          Multinomial Data
  CorrMixed               Estimate Correlations Between Repeatedly
                          Measured Endpoints (E.g., Reliability) Based on
                          Linear Mixed-Effects Models
  CorrToolBox             Modeling Correlational Magnitude
                          Transformations in Discretization Contexts
  CorrectOverloadedPeaks
                          Correct Overloaded Peaks from GC-APCI-MS Data
  CorrectedFDR            Correcting False Discovery Rates
  Correlplot              A Collection of Functions for Graphing
                          Correlation Matrices
  CortSineScore           Compute Cortisol Sine Score (CSS) for Diurnal
                          Cortisol Analysis
  Counterfactual          Estimation and Inference Methods for
                          Counterfactual Analysis
  Counternull             Randomization-Based Inference
  Countr                  Flexible Univariate Count Models Based on
                          Renewal Processes
  CountsEPPM              Mean and Variance Modeling of Count Data
  CovCorTest              Statistical Tests for Covariance and
                          Correlation Matrices and their Structures
  CovEsts                 Nonparametric Estimators for Covariance
                          Functions
  CovSel                  Model-Free Covariate Selection
  CovTools                Statistical Tools for Covariance Analysis
  CovidMutations          Mutation Analysis Toolkit for COVID-19
                          (Coronavirus Disease 2019)
  CoxAIPW                 Doubly Robust Inference for Cox Marginal
                          Structural Model with Informative Censoring
  CoxBcv                  Bias-Corrected Sandwich Variance Estimators for
                          Marginal Cox Analysis of Cluster Randomized
                          Trials
  CoxBoost                Cox Models by Likelihood Based Boosting for a
                          Single Survival Endpoint or Competing Risks
  CoxICPen                Variable Selection for Cox's Model with
                          Interval-Censored Data
  CoxLikelihood           Robust Likelihood Ratio Test and Confidence
                          Intervals for the Cox Model
  CoxMK                   A Model-X Knockoff Method for Genome-Wide
                          Survival Association Analysis
  CoxPlus                 Cox Regression (Proportional Hazards Model)
                          with Multiple Causes and Mixed Effects
  Coxmos                  Cox MultiBlock Survival
  CpGFilter               CpG Filtering Method Based on Intra-Class
                          Correlation Coefficients
  CpGassoc                Association Between Methylation and a Phenotype
                          of Interest
  CpmERCCutoff            Calculation of Log2 Counts per Million Cutoff
                          from ERCC Controls
  CptNonPar               Nonparametric Change Point Detection for
                          Multivariate Time Series
  CreditRisk              Evaluation of Credit Risk with Structural and
                          Reduced Form Models
  Cronbach                Cronbach's Alpha
  CropBreeding            Stability Analysis in Crop Breeding
  CropScapeR              Access Cropland Data Layer Data via the
                          'CropScape' Web Service
  CropWaterBalance        Climate Water Balance for Irrigation Purposes
  CrossCarry              Analysis of Data from a Crossover Design with
                          GEE
  CrossClustering         A Partial Clustering Algorithm
  CrossExpression         Cross-Expression Analysis of Spatial
                          Transcriptomics Data
  CrossValidate           Classes and Methods for Cross Validation of
                          "Class Prediction" Algorithms
  Crossover               Analysis and Search of Crossover Designs
  Crosstabs.Loglinear     Cross Tabulation and Loglinear Analyses of
                          Categorical Data
  CryptRndTest            Statistical Tests for Cryptographic Randomness
  CsChange                Testing for Change in C-Statistic
  Cubist                  Rule- And Instance-Based Regression Modeling
  CureDepCens             Dependent Censoring Regression Models with Cure
                          Fraction
  CurricularAnalytics     Exploring and Analyzing Academic Curricula
  CurricularComplexity    Toolkit for Analyzing Curricular Complexity
  CurricularComplexityData
                          Data for Exploring Curricular Complexity
  CustomDerivative        Pricing Various Types of Custom Derivatives
  CustomerScoringMetrics
                          Evaluation Metrics for Customer Scoring Models
                          Depending on Binary Classifiers
  CustosAscensor          Costs Allocation for the Installation of an
                          Elevator
  CutpointsOEHR           Optimal Equal-HR Method to Find Two Cutpoints
                          for U-Shaped Relationships in Cox Model
  CvmortalityMult         Cross-Validation for Multi-Population Mortality
                          Models
  Cyclops                 Cyclic Coordinate Descent for Logistic, Poisson
                          and Survival Analysis
  CytOpT                  Optimal Transport for Gating Transfer in
                          Cytometry Data with Domain Adaptation
  CytoProfile             Cytokine Profiling Analysis Tool
  CytoSimplex             Simplex Visualization of Cell Fate Similarity
                          in Single-Cell Data
  CytobankAPI             Cytobank API Wrapper for R
  D3GB                    Interactive Genome Browser
  D3mirt                  Descriptive 3D Multidimensional Item Response
                          Theory Modeling
  D3partitionR            Interactive Charts of Nested and Hierarchical
                          Data with 'D3.js'
  D4TAlink.light          GDP - Workflow Management
  DA                      Discriminant Analysis for Evolutionary
                          Inference
  DAAG                    Data Analysis and Graphics Data and Functions
  DAAGbio                 Data Sets and Functions, for Demonstrations
                          with Expression Arrays and Gene Sequences
  DAGassist               Test Robustness with Directed Acyclic Graphs
  DAIME                   Effects of Changing Deposition Rates
  DAISIE                  Dynamical Assembly of Islands by Speciation,
                          Immigration and Extinction
  DAISIEprep              Extracts Phylogenetic Island Community Data
                          from Phylogenetic Trees
  DAKS                    Data Analysis and Knowledge Spaces
  DALEX                   moDel Agnostic Language for Exploration and
                          eXplanation
  DALEXtra                Extension for 'DALEX' Package
  DALSM                   Nonparametric Double Additive Location-Scale
                          Model (DALSM)
  DALY                    The DALY Calculator - Graphical User Interface
                          for Probabilistic DALY Calculation in R
  DAMOCLES                Dynamic Assembly Model of Colonization, Local
                          Extinction and Speciation
  DANDELION               Discovery of Candidate Disease Genes Using
                          Trans-Regulatory Effects
  DAPAR                   Tools for the Differential Analysis of Proteins
                          Abundance with R
  DATAstudio              The Research Data Warehouse of Miguel de
                          Carvalho
  DArand                  Differential Analysis with Random Reference
                          Genes
  DBCVindex               Calculates the Density-Based Clustering
                          Validation (DBCV) Index
  DBHC                    Sequence Clustering with Discrete-Output HMMs
  DBI                     R Database Interface
  DBItest                 Testing DBI Backends
  DBModelSelect           Distribution-Based Model Selection
  DBNMFrank               Rank Selection for Non-Negative Matrix
                          Factorization
  DBR                     Discrete Beta Regression
  DBTC                    Dada-BLAST-Taxon Assign-Condense Metabarcode
                          Analysis
  DBfit                   A Double Bootstrap Method for Analyzing Linear
                          Models with Autoregressive Errors
  DBmaps                  A Metadata-Driven Framework for Streamlining
                          Database Joins
  DCCA                    Detrended Fluctuation and Detrended
                          Cross-Correlation Analysis
  DCEM                    Clustering Big Data using Expectation
                          Maximization Star (EM*) Algorithm
  DCEmgmt                 DCE Data Reshaping and Processing
  DCEtool                 Efficient and Accessible Discrete Choice
                          Experiments
  DCG                     Data Cloud Geometry (DCG): Using Random Walks
                          to Find Community Structure in Social Network
                          Analysis
  DCL                     Claims Reserving under the Double Chain Ladder
                          Model
  DCLEAR                  Distance Based Cell Lineage Reconstruction
  DCchoice                Analyzing Dichotomous Choice Contingent
                          Valuation Data
  DChaos                  Chaotic Time Series Analysis
  DCluster                Functions for the Detection of Spatial Clusters
                          of Diseases
  DClusterm               Model-Based Detection of Disease Clusters
  DDD                     Diversity-Dependent Diversification
  DDESONN                 A Deep Dynamic Experimental Self-Organizing
                          Neural Network Framework
  DDHFm                   Variance Stabilization by Data-Driven Haar-Fisz
                          (for Microarrays)
  DDIwR                   DDI with R
  DDL                     Doubly Debiased Lasso (DDL)
  DDM                     Death Registration Coverage Estimation
  DDPM                    Data Sets for Discrete Probability Models
  DDPstar                 Density Regression via Dirichlet Process
                          Mixtures of Normal Structured Additive
                          Regression Models
  DDRTree                 Learning Principal Graphs with DDRTree
  DEBBI                   Differential Evolution-Based Bayesian Inference
  DECIDE                  DEComposition of Indirect and Direct Effects
  DECIPHER                Tools for curating, analyzing, and manipulating
                          biological sequences
  DEET                    Differential Expression Enrichment Tool
  DEEVD                   Density Estimation by Extreme Value
                          Distributions
  DEHOGT                  Differentially Expressed Heterogeneous
                          Overdispersion Gene Test for Count Data
  DELTD                   Kernel Density Estimation using Lifetime
                          Distributions
  DEM                     The Distributed EM Algorithms in Multivariate
                          Gaussian Mixture Models
  DENSaftertransform      Estimating Density after Logarithmic or Power
                          Transformation of Data
  DEPONS2R                Read, Plot and Analyse Output from the DEPONS
                          Model
  DER                     Income Polarization Index
  DES                     Discrete Event Simulation
  DESA                    Detecting Epidemics using School Absenteeism
  DESNP                   Differentially Expressed Single Nucleotide
                          Polymorphism
  DESeq2                  Differential gene expression analysis based on
                          the negative binomial distribution
  DET                     Representation of DET Curve with Confidence
                          Intervals
  DEXiR                   'DEXi' Library
  DEmixR                  Fit Two-Component Normal and Lognormal Mixture
                          Models
  DEoptim                 Global Optimization by Differential Evolution
  DEoptimR                Differential Evolution Optimization in Pure R
  DEploid                 Deconvolute Mixed Genomes with Unknown
                          Proportions
  DEploid.utils           'DEploid' Data Analysis and Results
                          Interpretation
  DEplotting              Visualization Tools for German Regional Data
  DFA                     Detrended Fluctuation Analysis
  DFA.CANCOR              Linear Discriminant Function and Canonical
                          Correlation Analysis
  DFBA                    Distribution-Free Bayesian Analysis
  DFD                     Extract Drugs from Differential Expression Data
                          from LINCS Database
  DFIT                    Differential Functioning of Items and Tests
  DGEAR                   Differential Gene Expression Analysis with R
  DGEobj                  Differential Gene Expression (DGE) Analysis
                          Results Data Object
  DGEobj.utils            Differential Gene Expression (DGE) Analysis
                          Utility Toolkit
  DGLMExtPois             Double Generalized Linear Models Extending
                          Poisson Regression
  DGP4LCF                 Dependent Gaussian Processes for Longitudinal
                          Correlated Factors
  DHARMa                  Residual Diagnostics for Hierarchical
                          (Multi-Level / Mixed) Regression Models
  DHBins                  Hexmaps for NZ District Health Boards
  DHS.rates               Calculates Demographic Indicators
  DHSr                    Create Large Scale Repeated Regression Summary
                          Statistics Dataset and Visualization Seamlessly
  DICErClust              Deep Significance Clustering for Clinical Risk
                          Stratification
  DICOMread               Reading and Saving DICOM Image Files
  DIDHAD                  Difference-in-Differences in Heterogeneous
                          Adoption Designs with Quasi Untreated Groups
  DIDmultiplegt           Estimators DID with Multiple Groups and Periods
  DIDmultiplegtDYN        Estimation in Staggered First Switch Designs,
                          where Groups Experience their First Treatment
                          Change at Different Points in Time
  DIETCOST                Calculate the Cost and Environmental Impact of
                          a Ideal Diet
  DIFM                    Dynamic ICAR Spatiotemporal Factor Models
  DIFboost                Detection of Differential Item Functioning
                          (DIF) in Rasch Models by Boosting Techniques
  DIFlasso                A Penalty Approach to Differential Item
                          Functioning in Rasch Models
  DIFplus                 Multilevel Mantel-Haenszel Statistics for
                          Differential Item Functioning Detection
  DIFshiny                Differential Item Functioning via Shiny
                          Application
  DIFtree                 Item Focussed Trees for the Identification of
                          Items in Differential Item Functioning
  DIGSS                   Determination of Intervals Using Georeferenced
                          Survey Simulation
  DIME                    Differential Identification using Mixture
                          Ensemble
  DIMORA                  Diffusion Models R Analysis
  DIRECT                  Bayesian Clustering of Multivariate Data Under
                          the Dirichlet-Process Prior
  DIRMR                   Distributed Imputation for Random Effects
                          Models with Missing Responses
  DIVINE                  Curated Datasets and Tools for Epidemiological
                          Data Analysis
  DIZtools                Lightweight Utilities for 'DIZ' R Package
                          Development
  DIZutils                Utilities for 'DIZ' R Package Development
  DImodels                Diversity-Interactions (DI) Models
  DImodelsMulti           Fit Multivariate Diversity-Interactions Models
                          with Repeated Measures
  DImodelsVis             Visualising and Interpreting Statistical Models
                          Fit to Compositional Data
  DIscBIO                 A User-Friendly Pipeline for Biomarker
                          Discovery in Single-Cell Transcriptomics
  DJL                     Distance Measure Based Judgment and Learning
  DLASSO                  Implementation of Adaptive or Non-Adaptive
                          Differentiable Lasso and SCAD Penalties in
                          Linear Models
  DLEGFM                  Distributed Loading Estimation for General
                          Factor Model
  DLFM                    Distributed Laplace Factor Model
  DLL                     Decorrelated Local Linear Estimator
  DLMRMV                  Distributed Linear Regression Models with
                          Response Missing Variables
  DLMtool                 Data-Limited Methods Toolkit
  DLPCA                   The Distributed Local PCA Algorithm
  DMCfun                  Diffusion Model of Conflict (DMC) in Reaction
                          Time Tasks
  DMMF                    Daily Based Morgan-Morgan-Finney (DMMF) Soil
                          Erosion Model
  DMRnet                  Delete or Merge Regressors Algorithms for
                          Linear and Logistic Model Selection and
                          High-Dimensional Data
  DMtest                  Differential Methylation Tests (DMtest)
  DNAcopy                 DNA Copy Number Data Analysis
  DNAmf                   Diffusion Non-Additive Model with Tunable
                          Precision
  DNAmixturesLite         Statistical Inference for Mixed Traces of DNA
                          (Lite-Version)
  DNAmotif                DNA Sequence Motifs
  DNAseqtest              Generating and Testing DNA Sequences
  DNAtools                Tools for Analysing Forensic Genetic DNA Data
  DNMF                    Discriminant Non-Negative Matrix Factorization
  DNNSIM                  Single-Index Neural Network for Skewed
                          Heavy-Tailed Data
  DNetFinder              Estimating Differential Networks under
                          Semiparametric Gaussian Graphical Models
  DOEM                    The Distributed Online Expectation Maximization
                          Algorithms to Solve Parameters of Poisson
                          Mixture Models
  DOIcreator              Append DOIs to References in Word Documents
  DOPE                    Drug Ontology Parsing Engine
  DOS                     Design of Observational Studies
  DOS2                    Design of Observational Studies, Companion to
                          the Second Edition
  DOSE                    Disease Ontology Semantic and Enrichment
                          analysis
  DOSPortfolio            Dynamic Optimal Shrinkage Portfolio
  DOVE                    Durability of Vaccine Efficacy
  DOYPAColors             Don't Overthink Your Palette of Colors
  DOvalidation            Kernel Hazard Estimation with Best One-Sided
                          and Double One-Sided Cross-Validation
  DPCD                    Dirichlet Process Clustering with
                          Dissimilarities
  DPI                     The Directed Prediction Index for Causal
                          Direction Inference from Observational Data
  DPP                     Inference of Parameters of Normal Distributions
                          from a Mixture of Normals
  DPQ                     Density, Probability, Quantile ('DPQ')
                          Computations
  DPQBootstrap            Dirichlet Quantile Bootstrap for Time Series
  DPQmpfr                 DPQ (Density, Probability, Quantile)
                          Distribution Computations using MPFR
  DPTM                    Dynamic Panel Multiple Threshold Model with
                          Fixed Effects
  DPpack                  Differentially Private Statistical Analysis and
                          Machine Learning
  DQA                     Data Quality Assessment Tools
  DQAgui                  Graphical User Interface for Data Quality
                          Assessment
  DQAstats                Core Functions for Data Quality Assessment
  DR.SC                   Joint Dimension Reduction and Spatial
                          Clustering
  DRDID                   Doubly Robust Difference-in-Differences
                          Estimators
  DREGAR                  Regularized Estimation of Dynamic Linear
                          Regression in the Presence of Autocorrelated
                          Residuals (DREGAR)
  DRHotNet                Differential Risk Hotspots in a Linear Network
  DRIP                    Discontinuous Regression and Image Processing
  DRPT                    Density Ratio Permutation Test
  DRR                     Dimensionality Reduction via Regression
  DRaWR                   Discriminative Random Walk with Restart
  DRclass                 Consider Ambiguity in Probabilistic
                          Descriptions Using Density Ratio Classes
  DRomics                 Dose Response for Omics
  DRquality               Quality Measurements for Dimensionality
                          Reduction
  DRsurvCRT               Doubly-Robust Estimation for Survival Outcomes
                          in Cluster-Randomized Trials
  DRviaSPCN               Drug Repurposing in Cancer via a Subpathway
                          Crosstalk Network
  DSAIDE                  Dynamical Systems Approach to Infectious
                          Disease Epidemiology (Ecology/Evolution)
  DSAIRM                  Dynamical Systems Approach to Immune Response
                          Modeling
  DSAM                    Data Splitting Algorithms for Model
                          Developments
  DSBayes                 Bayesian Subgroup Analysis in Clinical Trials
  DSFM                    Distributed Skew Factor Model Estimation
                          Methods
  DSI                     'DataSHIELD' Interface
  DSIR                    Data Science Infrastructure for Global Health
  DSL                     Distributed Storage and List
  DSLite                  'DataSHIELD' Implementation on Local Datasets
  DSMolgenisArmadillo     'DataSHIELD' Client for 'MOLGENIS Armadillo'
  DSOpal                  'DataSHIELD' Implementation for 'Opal'
  DSSAT                   A Comprehensive R Interface for the DSSAT
                          Cropping Systems Model
  DSWE                    Data Science for Wind Energy
  DSjobtracker            What Skills and Qualifications are Required for
                          Data Science Related Jobs?
  DSpoty                  Get 'Spotify' API Multiple Information
  DT                      A Wrapper of the JavaScript Library
                          'DataTables'
  DT2                     'DataTables' 2.x for R
  DTAT                    Dose Titration Algorithm Tuning
  DTAXG                   Diagnostic Test Assessment in the Absence of
                          Gold Standard
  DTAplots                Creates Plots Accompanying Bayesian Diagnostic
                          Test Accuracy Meta-Analyses
  DTComPair               Comparison of Binary Diagnostic Tests in a
                          Paired Study Design
  DTDA                    Doubly Truncated Data Analysis
  DTDA.cif                Doubly Truncated Data Analysis, Cumulative
                          Incidence Functions
  DTDA.ni                 Doubly Truncated Data Analysis, Non Iterative
  DTEAssurance            Assurance Methods for Clinical Trials with a
                          Delayed Treatment Effect
  DTEBOP2                 Bayesian Optimal Phase II Randomized Clinical
                          Trial Design with Delayed Outcomes
  DTFM                    Distributed Online Covariance Matrix Tests for
                          Truncated Factor Model
  DTMCPack                Suite of Functions Related to Discrete-Time
                          Discrete-State Markov Chains
  DTRKernSmooth           Estimate and Make Inference About Optimal
                          Treatment Regimes via Smoothed Methods
  DTRlearn2               Statistical Learning Methods for Optimizing
                          Dynamic Treatment Regimes
  DTRreg                  DTR Estimation and Inference via G-Estimation,
                          Dynamic WOLS, Q-Learning, and Dynamic Weighted
                          Survival Modeling (DWSurv)
  DTS                     Discrete Tempered Stable Distributions
  DTSEA                   Drug Target Set Enrichment Analysis
  DTSg                    A Class for Working with Time Series Data Based
                          on 'data.table' and 'R6' with Largely Optional
                          Reference Semantics
  DTWBI                   Imputation of Time Series Based on Dynamic Time
                          Warping
  DTWUMI                  Imputation of Multivariate Time Series Based on
                          Dynamic Time Warping
  DTwrappers              Simplified Data Analysis with Wrapper Functions
                          for the 'Data.Table' Package
  DTwrappers2             Extensions of 'DTwrappers'
  DUToolkit               Visualizing and Quantifying Decision
                          Uncertainty
  DVHmetrics              Analyze Dose-Volume Histograms and Check
                          Constraints
  DWDLargeR               Fast Algorithms for Large Scale Generalized
                          Distance Weighted Discrimination
  DWLS                    Gene Expression Deconvolution Using Dampened
                          Weighted Least Squares
  DWaveNARDL              Dual Wavelet Based NARDL Model
  DWreg                   Parametric Regression for Discrete Response
  DYM                     Did You Mean?
  DamageDetective         Detecting Damaged Cells in Single-Cell RNA
                          Sequencing Data
  DamiaNN                 Neural Network Numerai
  DandEFA                 Dandelion Plot for R-Mode Exploratory Factor
                          Analysis
  DanielBiostatistics10th
                          Functions for Wayne W. Daniel's Biostatistics,
                          Tenth Edition
  Dark                    The Analysis of Dark Adaptation Data
  DarkDiv                 Estimating Dark Diversity and Site-Specific
                          Species Pools
  DasGuptR                Das Gupta Standardisation and Decomposition
  Dasst                   Tools for Reading, Processing and Writing
                          'DSSAT' Files
  DataClean               Data Cleaning
  DataDNA                 Data Frame Fingerprints and Lineage Figures
  DataEditR               An Interactive Editor for Viewing, Entering,
                          Filtering & Editing Data
  DataExplorer            Automate Data Exploration and Treatment
  DataFusionGDM           Machine Learning for Integrating Partially
                          Overlapped Genetic Datasets
  DataGraph               Export Data from 'R' to 'DataGraph'
  DataLoader              Import Multiple File Types
  DataMetProcess          Meteorological Data Processing
  DataPackageR            Construct Reproducible Analytic Data Sets as R
                          Packages
  DataQualityDashboard    Execute and View Data Quality Checks on OMOP
                          CDM Database
  DataSetsUni             A Collection of Univariate Data Sets
  DataSetsVerse           A Metapackage for Thematic and Domain-Specific
                          Datasets
  DataSimilarity          Quantifying Similarity of Datasets and
                          Multivariate Two- And k-Sample Testing
  DataSpaceR              Interface to 'the CAVD DataSpace'
  DataSum                 Comprehensive Data Summarization for
                          Statistical Analysis
  DataVisualizations      Visualizations of High-Dimensional Data
  DataViz                 Data Visualisation Using an HTML Page and
                          'D3.js'
  DatabaseConnector       Connecting to Various Database Platforms
  DatabaseConnectorJars   JAR Dependencies for the 'DatabaseConnector'
                          Package
  DatabionicSwarm         Swarm Intelligence for Self-Organized
                          Clustering
  DatastreamDSWS2R        Provides a Link Between the 'LSEG Datastream'
                          System and R
  DatastreamR             Datastream API
  DateTimeRangePicker     A Datetime Range Picker Widget for Usage in
                          'Shiny' Applications
  Davies                  The Davies Quantile Function
  Dcurvature              Discrete Curvature with 'shiny' Explorer
  DeBoinR                 Box-Plots and Outlier Detection for Probability
                          Density Functions
  DeCAFS                  Detecting Changes in Autocorrelated and
                          Fluctuating Signals
  DeRezende.Ferreira      Zero Coupon Yield Curve Modelling
  DeSciDe                 Tool for Unbiased Literature Searching and Gene
                          List Curation
  DebiasInfer             Efficient Inference on High-Dimensional Linear
                          Model with Missing Outcomes
  DecisionDrift           Detecting, Decomposing, and Stress-Testing
                          Temporal Change in Repeated Decision Systems
  DeclareDesign           Declare and Diagnose Research Designs
  DecomposeR              Empirical Mode Decomposition for
                          Cyclostratigraphy
  DecorateR               Fit and Deploy DECORATE Trees
  DedooseR                Monitoring and Analyzing Dedoose Qualitative
                          Data Exports
  Deducer                 A Data Analysis GUI for R
  DeductiveR              Deductive Rational Method
  DeepLearningCausal      Causal Inference with Super Learner and Deep
                          Neural Networks
  DegreeDayCalc           Degree-Day Phenology Calculator ('shiny'
                          Application)
  Delaporte               Statistical Functions for the Delaporte
                          Distribution
  DelayedArray            A unified framework for working transparently
                          with on-disk and in-memory array-like datasets
  DelayedEffect.Design    Sample Size and Power Calculations using the
                          APPLE, SEPPLE, APPLE+ and SEPPLE+ Methods
  DelayedMatrixStats      Functions that Apply to Rows and Columns of
                          'DelayedMatrix' Objects
  Delta                   Measure of Agreement Between Two Raters
  DeltaMAN                Delta Measurement of Agreement for Nominal Data
  DemoDecomp              Decompose Demographic Functions
  DemoKin                 Estimate Population Kin Distribution
  DemographicTable        Create Demographic Table
  DendSer                 Dendrogram Seriation: Ordering for
                          Visualisation
  DendroSync              A Set of Tools for Calculating Spatial
                          Synchrony Between Tree-Ring Chronologies
  DensParcorr             Dens-Based Method for Partial Correlation
                          Estimation in Large Scale Brain Networks
  DepCens                 Dependent Censoring Regression Models
  DepLogo                 Dependency Logo
  DepMod                  Decision-Analytic Modelling for Depression
                          Prevention and Treatment
  DepthProc               Statistical Depth Functions for Multivariate
                          Analysis
  Deriv                   Symbolic Differentiation
  DescTools               Tools for Descriptive Statistics
  DescToolsAddIns         Interactive Functions to be Used as Shortcuts
                          in 'RStudio'
  DescribeDF              Description of a Data Frame
  DescribeDisplay         An Interface to the 'DescribeDisplay' 'GGobi'
                          Plugin
  DescriptiveRepresentationCalculator
                          Characterizing Observed and Expected
                          Representation
  DescriptiveStats.OBeu   Descriptive Statistics 'OpenBudgets.eu'
  DescriptiveWH           Descriptive Statistics
  Design.parameters       Parameters of the Experimental Designs
  DesignLibrary           Library of Research Designs
  Desimml                 Distributed Estimation in Single-Index Models
                          with Multiple Links ('Desimml')
  DetLifeInsurance        Life Insurance Premium and Reserves Valuation
  DetMCD                  Implementation of the DetMCD Algorithm (Robust
                          and Deterministic Estimation of Location and
                          Scatter)
  DevTreatRules           Develop Treatment Rules with Observational Data
  Devore7                 Data sets from Devore's "Prob and Stat for Eng
                          (7th ed)"
  Dforest                 Decision Forest
  DiDforBigData           A Big Data Implementation of
                          Difference-in-Differences Estimation with
                          Staggered Treatment
  DiNAMIC.Duo             Finding Recurrent DNA Copy Number Alterations
                          and Differences
  DiPALM                  Differential Pattern Analysis via Linear
                          Modeling
  DiPhiSeq                Robust Tests for Differential Dispersion and
                          Differential Expression in RNA-Sequencing Data
  DiPs                    Directional Penalties for Optimal Matching in
                          Observational Studies
  DiSCos                  Distributional Synthetic Controls Estimation
  DiSSMod                 Fitting Sample Selection Models for Discrete
                          Response Variables
  DiagrammeR              Graph/Network Visualization
  DiagrammeRsvg           Export DiagrammeR Graphviz Graphs as SVG
  DiallelAnalysisR        Diallel Analysis with R
  DiceDesign              Designs of Computer Experiments
  DiceEval                Construction and Evaluation of Metamodels
  DiceKriging             Kriging Methods for Computer Experiments
  DiceOptim               Kriging-Based Optimization for Computer
                          Experiments
  DiceView                Methods for Visualization of Computer
                          Experiments Design and Surrogate
  Dict                    R6 Based Key-Value Dictionary Implementation
  DidacticBoost           A Simple Implementation and Demonstration of
                          Gradient Boosting
  DiffCorr                Analyzing and Visualizing Differential
                          Correlation Networks in Biological Data
  DiffNet                 Identifying Significant Node Scores using
                          Network Diffusion Algorithm
  DiffXTables             Pattern Analysis Across Contingency Tables
  DigestiveDataSets       A Curated Collection of Digestive System and
                          Gastrointestinal Disease Datasets
  Dimodal                 Spacing Tests for Multi-Modality
  DirStats                Nonparametric Methods for Directional Data
  Dire                    Linear Regressions with a Latent Outcome
                          Variable
  DirectEffects           Estimating Controlled Direct Effects for
                          Explaining Causal Findings
  DirectStandardisation   Adjusted Means and Proportions by Direct
                          Standardisation
  DirectedClustering      Directed Weighted Clustering Coefficient
  Directional             A Collection of Functions for Directional Data
                          Analysis
  DirichletMultinomial    Dirichlet-Multinomial Mixture Model Machine
                          Learning for Microbiome Data
  DirichletRF             "Dirichlet Random Forest"
  DirichletReg            Dirichlet Regression
  DisImpact               Calculates Disproportionate Impact When Binary
                          Success Data are Disaggregated by Subgroups
  DisaggregateTS          High-Dimensional Temporal Disaggregation
  DisasterAlert           Disaster Alert and Sentiment Analysis
  DiscreteDLM             Bayesian Distributed Lag Model Fitting for
                          Binary and Count Response Data
  DiscreteDatasets        Example Data Sets for Use with Discrete
                          Statistical Tests
  DiscreteDists           Discrete Statistical Distributions
  DiscreteFDR             FDR Based Multiple Testing Procedures with
                          Adaptation for Discrete Tests
  DiscreteFWER            FWER-Based Multiple Testing Procedures with
                          Adaptation for Discrete Tests
  DiscreteGapStatistic    An Extension of the Gap Statistic for
                          Ordinal/Categorical Data
  DiscreteInverseWeibull
                          Discrete Inverse Weibull Distribution
  DiscreteLaplace         Discrete Laplace Distributions
  DiscreteQvalue          Improved q-Values for Discrete Uniform and
                          Homogeneous Tests
  DiscreteTests           Vectorised Computation of P-Values and Their
                          Supports for Several Discrete Statistical Tests
  DiscreteWeibull         Discrete Weibull Distributions (Type 1 and 3)
  DisimForMixed           Calculate Dissimilarity Matrix for Dataset with
                          Mixed Attributes
  DistPlotter             A Graphical User Interface for Plotting Common
                          Univariate Distributions
  Distance                Distance Sampling Detection Function and
                          Abundance Estimation
  DistatisR               DiSTATIS Three Way Metric Multidimensional
                          Scaling
  Distributacalcul        Probability Distribution Functions
  DistributionIV          Distributional Instrumental Variable (DIV)
                          Model
  DistributionOptimization
                          Distribution Optimization
  DistributionTest        Powerful Goodness-of-Fit Tests Based on the
                          Likelihood Ratio
  DistributionUtils       Distribution Utilities
  Ditwah                  Ditwah Storm Data and Tools for Storm
                          Monitoring and Early Warning November 2025, Sri
                          Lanka
  DivE                    Diversity Estimator
  DiversificationR        Econometric Tools to Measure Portfolio
                          Diversification
  DiversityStats          Diversity Indices with Statistical Inference
  DoE.MIParray            Creation of Arrays by Mixed Integer Programming
  DoE.base                Full Factorials, Orthogonal Arrays and Base
                          Utilities for DoE Packages
  DoE.wrapper             Wrapper Package for Design of Experiments
                          Functionality
  DockerParallel          Using the Docker Container to Create R Workers
                          on Local or Cloud Platform
  Docovt                  Distributed Online Covariance Matrix Tests
  Dogoftest               Distributed Online Goodness-of-Fit Tests for
                          Distributed Datasets
  Domean                  Distributed Online Mean Tests
  DominoDataR             'Domino Data R SDK'
  DonutMap                Donut Maps with 'sf', 'ggplot2', and 'leaflet'
  DoseFinding             Planning and Analyzing Dose Finding Experiments
  DoubleCone              Test Against Parametric Regression Function
  DoubleExpSeq            Differential Exon Usage Test for RNA-Seq Data
                          via Empirical Bayes Shrinkage of the Dispersion
                          Parameter
  DoubleML                Double Machine Learning in R
  Dowd                    Functions Ported from 'MMR2' Toolbox Offered in
                          Kevin Dowd's Book Measuring Market Risk
  DownBallotR             Access Federal, State, and Local Election Data
  Dpit                    Distribution Pitting
  DrBats                  Data Representation: Bayesian Approach That's
                          Sparse
  DrData                  Interactive Statistical Analysis and Machine
                          Learning Platform
  DrImpute                Imputing Dropout Events in Single-Cell
                          RNA-Sequencing Data
  DrillR                  R Driver for Apache Drill
  DrivePlotR              Linked Plot Maps for Multivariate
                          High-Resolution Spatio-Temporal Data
  DropletUtils            Utilities for Handling Single-Cell Droplet Data
  DrugExposureDiagnostics
                          Diagnostics for OMOP Common Data Model Drug
                          Records
  DrugSim2DR              Predict Drug Functional Similarity to Drug
                          Repurposing
  DrugUtilisation         Summarise Patient-Level Drug Utilisation in
                          Data Mapped to the OMOP Common Data Model
  DstarM                  Analyze Two Choice Reaction Time Data with the
                          D*M Method
  Dtableone               Tabular Comparison of Paired Diagnostic Tests
  Durga                   Effect Size Estimation and Visualisation
  DyMEP                   Dynamic Multi Environment Phenology-Model
  DySS                    Dynamic Screening Systems
  DyadRatios              Dyad Ratios Algorithm for Latent Variable
                          Estimation
  DyadiCarma              Dyadic Matrices and their Algebra using 'Rcpp'
                          and 'RcppArmadillo'
  Dykstra                 Quadratic Programming using Cyclic Projections
  DynClust                Denoising and Clustering for Dynamical Image
                          Sequence (2D or 3D)+t
  DynDoc                  Dynamic document tools
  DynForest               Random Forest with Multivariate Longitudinal
                          Predictors
  DynNom                  Visualising Statistical Models using Dynamic
                          Nomograms
  DynTxRegime             Methods for Estimating Optimal Dynamic
                          Treatment Regimes
  DynareR                 Bringing the Power of 'Dynare' to 'R', 'R
                          Markdown', and 'Quarto'
  DysPIA                  Dysregulated Pathway Identification Analysis
  DysPIAData              Background and Pathway Data Used in 'DysPIA'
  E2E                     Ensemble Learning Framework for Diagnostic and
                          Prognostic Modeling
  EATME                   Exponentially Weighted Moving Average with
                          Adjustments to Measurement Error
  EAVA                    Deterministic Verbal Autopsy Coding with Expert
                          Algorithm Verbal Autopsy
  EBASE                   Estuarine Bayesian Single-Station Estimation
                          Method for Ecosystem Metabolism
  EBCHS                   An Empirical Bayes Method for Chi-Squared Data
  EBEN                    Empirical Bayesian Elastic Net
  EBImage                 Image processing and analysis toolbox for R
  EBMAforecast            Estimate Ensemble Bayesian Model Averaging
                          Forecasts using Gibbs Sampling or EM-Algorithms
  EBcoBART                Co-Data Learning for Bayesian Additive
                          Regression Trees
  EBrank                  Empirical Bayes Ranking
  ECDFniche               Empirical Cumulative Distribution Function
                          Niche Modeling Tools
  ECG                     Center of Gravity Methods
  ECGofTestDx             A Goodness-of-Fit Test for Elliptical
                          Distributions with Diagnostic Capabilities
  ECMLE                   Approximating Evidence via Bounded Harmonic
                          Means
  ECOSolveR               Embedded Conic Solver in R
  ECOTOXr                 Download and Extract Data from US EPA's ECOTOX
                          Database
  ECTSVR                  Cointegration Based Support Vector Regression
                          Model
  ECTTDNN                 Cointegration Based Timedelay Neural Network
                          Model
  ECharts2Shiny           Embedding Interactive Charts Generated with
                          ECharts Library into Shiny Applications
  ECoL                    Complexity Measures for Supervised Problems
  EDCimport               Import Data from EDC Software
  EDISON                  Network Reconstruction and Changepoint
                          Detection
  EDIutils                An API Client for the Environmental Data
                          Initiative Repository
  EDNE.EQ                 Implements the EDNE-Test for Equivalence
  EDOIF                   Empirical Distribution Ordering Inference
                          Framework (EDOIF)
  EDOtrans                Euclidean Distance-Optimized Data
                          Transformation
  EE.Data                 Objects for Predicting Energy Expenditure
  EEAaq                   Handle Air Quality Data from the European
                          Environment Agency Data Portal
  EEEA                    Explicit Exploration Strategy for Evolutionary
                          Algorithms
  EEM                     Read and Preprocess Fluorescence
                          Excitation-Emission Matrix (EEM) Data
  EEMDSVR                 Ensemble Empirical Mode Decomposition and Its
                          Variant Based Support Vector Regression Model
  EEMDelm                 Ensemble Empirical Mode Decomposition and Its
                          Variant Based ELM Model
  EEMDlstm                EEMD Based LSTM Model for Time Series
                          Forecasting
  EEML                    Ensemble Explainable Machine Learning Models
  EFA.MRFA                Dimensionality Assessment Using Minimum Rank
                          Factor Analysis
  EFA.dimensions          Exploratory Factor Analysis Functions for
                          Assessing Dimensionality
  EFAfactors              Determining the Number of Factors in
                          Exploratory Factor Analysis
  EFAtools                Fast and Flexible Implementations of
                          Exploratory Factor Analysis Tools
  EFAutilities            Utility Functions for Exploratory Factor
                          Analysis
  EFDR                    Wavelet-Based Enhanced FDR for Detecting
                          Signals from Complete or Incomplete Spatially
                          Aggregated Data
  EFM                     Elliptical Factor Models
  EFSATools               EFSA Ensemble of Data Collections Tools
  EGAnet                  Exploratory Graph Analysis – a Framework for
                          Estimating the Number of Dimensions in
                          Multivariate Data using Network Psychometrics
  EGM                     Intracardiac Electrograms
  EGRET                   Exploration and Graphics for RivEr Trends
  EGRETci                 Exploration and Graphics for RivEr Trends
                          Confidence Intervals
  EGRNi                   Ensemble Gene Regulatory Network Inference
  EHR                     Electronic Health Record (EHR) Data Processing
                          and Analysis Tool
  EHRmuse                 Multi-Cohort Selection Bias Correction using
                          IPW and AIPW Methods
  EHRtemporalVariability
                          Delineating Temporal Dataset Shifts in
                          Electronic Health Records
  EIAapi                  Query Data from the 'EIA' API
  EIEntropy               Ecological Inference Applying Entropy
  EIX                     Explain Interactions in 'XGBoost'
  EKMCMC                  MCMC Procedures for Estimating Enzyme Kinetics
                          Constants
  EL                      Two-Sample Empirical Likelihood
  EL2Surv                 Empirical Likelihood (EL) for Comparing Two
                          Survival Functions
  ELAplus                 Energy Landscape Analysis for Ecological
                          Communities
  ELIC                    LIC for Distributed Elliptical Model
  ELISAtools              ELISA Data Analysis with Batch Correction
  ELT                     Experience Life Tables
  ELYP                    Empirical Likelihood Analysis for the Cox Model
                          and Yang-Prentice (2005) Model
  ELmethodVar             Empirical Likelihood Inference of Variance
                          Components in Linear Mixed-Effects Models
  EMAR                    Empirical Model Assessment
  EMAS                    Epigenome-Wide Mediation Analysis Study
  EMC2                    Bayesian Hierarchical Analysis of Cognitive
                          Models of Choice
  EMCluster               EM Algorithm for Model-Based Clustering of
                          Finite Mixture Gaussian Distribution
  EMD                     Empirical Mode Decomposition and Hilbert
                          Spectral Analysis
  EMDANNhybrid            Empirical Mode Decomposition Based Artificial
                          Neural Network Model
  EMDSVRhybrid            Empirical Mode Decomposition Based Support
                          Vector Regression Model
  EMGCR                   Fit a Mixture Cure Rate Model with Custom Link
                          Function
  EMJMCMC                 Evolutionary Mode Jumping Markov Chain Monte
                          Carlo Expert Toolbox
  EML                     Read and Write Ecological Metadata Language
                          Files
  EMLI                    Computationally Efficient Maximum Likelihood
                          Identification of Linear Dynamical Systems
  EMMAgeo                 End-Member Modelling of Grain-Size Data
  EMMIXSSL                Semi-Supervised Gaussian Mixture Model with a
                          Missing-Data Mechanism
  EMMIXgene               A Mixture Model-Based Approach to the
                          Clustering of Microarray Expression Data
  EMMIXmfa                Mixture Models with Component-Wise Factor
                          Analyzers
  EMMLi                   A Maximum Likelihood Approach to the Analysis
                          of Modularity
  EMMREML                 Fitting Mixed Models with Known Covariance
                          Structures
  EMOTIONS                Ensemble Models for Lactation Curves
  EMP                     Expected Maximum Profit Classification
                          Performance Measure
  EMSC                    Extended Multiplicative Signal Correction
  EMSNM                   EM Algorithm for Sigmoid Normal Model
  EMSS                    Some EM-Type Estimation Methods for the Heckman
                          Selection Model
  EMSaov                  The Analysis of Variance with EMS
  EMT                     Exact Multinomial Test: Goodness-of-Fit Test
                          for Discrete Multivariate Data
  EMbC                    Expectation-Maximization Binary Clustering
  EMgaussian              Expectation-Maximization Algorithm for
                          Multivariate Normal (Gaussian) with Missing
                          Data
  EMpeaksR                Conducting the Peak Fitting Based on the EM
                          Algorithm
  ENMTools                Analysis of Niche Evolution using Niche and
                          Distribution Models
  ENMeval                 Automated Tuning and Evaluations of Ecological
                          Niche Models
  EPLSIM                  Partial Linear Single Index Models for
                          Environmental Mixture Analysis
  EPT                     Ensemble Patch Transform, Visualization and
                          Decomposition
  EPX                     Ensemble of Phalanxes
  EQL                     Extended-Quasi-Likelihood-Function (EQL)
  EQRN                    Extreme Quantile Regression Neural Networks for
                          Risk Forecasting
  EQUALCompareImages      Comparison of Images for Researchers Without
                          Coding Skills
  EQUALPrognosis          Analysing Prognostic Studies
  EQUALSTATS              Algorithm Driven Statistical Analysis for
                          Researchers without Coding Skills
  EQUALencrypt            Encryption and Decryption of Files and Data for
                          Researchers Without Coding Skills
  EQUALrepeat             Algorithm Driven Time Series Analysis for
                          Researchers without Coding Skills
  EQUIVNONINF             Testing for Equivalence and Noninferiority
  ER                      Effect + Residual Modelling
  ERDbuilder              Entity Relationship Diagrams Builder
  ERP                     Significance Analysis of Event-Related
                          Potentials Data
  ERPM                    Exponential Random Partition Models
  ERPeq                   Probabilistic Hazard Assessment
  ERSA                    Exploratory Regression 'Shiny' App
  ES                      Edge Selection
  ESG                     A Package for Asset Projection
  ETAS                    Modeling Earthquake Data Using 'ETAS' Model
  ETASbootstrap           Bootstrap Confidence Interval Estimation for
                          'ETAS' Model Parameters
  ETC                     Equivalence to Control
  ETDQualitizer           Automated Eye Tracking Data Quality
                          Determination for Screen-Based Eye Trackers
  ETLUtils                Utility Functions to Execute Standard
                          Extract/Transform/Load Operations (using
                          Package 'ff') on Large Data
  ETRep                   Analysis of Elliptical Tubes Under the Relative
                          Curvature Condition
  EUfootball              Football Match Data of European Leagues
  EVI                     Epidemic Volatility Index as an Early-Warning
                          Tool
  EValue                  Sensitivity Analyses for Unmeasured Confounding
                          and Other Biases in Observational Studies and
                          Meta-Analyses
  EVchargcost             Computes and Plot the Optimal Charging Strategy
                          for Electric Vehicles
  EWGoF                   Goodness-of-Fit Tests for the Exponential and
                          Two-Parameter Weibull Distributions
  EWOC.Comb               Escalation with Overdose Control using 2 Drug
                          Combinations
  EWS                     Early Warning System
  EWSmethods              Forecasting Tipping Points at the Community
                          Level
  EXPAR                   Fitting of Exponential Autoregressive (EXPAR)
                          Model
  EXPARMA                 Fitting of Exponential Autoregressive Moving
                          Average (EXPARMA) Model
  EXRQ                    Extreme Regression of Quantiles
  EZFragility             Compute Neural Fragility for Ictal iEEG Time
                          Series
  EZbakR                  Analyze and Integrate Any Type of Nucleotide
                          Recoding RNA-Seq Data
  EZtune                  Tunes AdaBoost, Elastic Net, Support Vector
                          Machines, and Gradient Boosting Machines
  Eagle                   Multiple Locus Association Mapping on a
                          Genome-Wide Scale
  Ease                    Simulating Explicit Population Genetics Models
  EasyABC                 Efficient Approximate Bayesian Computation
                          Sampling Schemes
  EasyDescribe            A Convenient Way of Descriptive Statistics
  EasyMx                  Easy Model-Builder Functions for 'OpenMx'
  EasyStat                Automated Statistical Analysis, Visualization
                          and Multi-Format Narrative Reporting
  EbayesThresh            Empirical Bayes Thresholding and Related
                          Methods
  Ecdat                   Data Sets for Econometrics
  Ecfun                   Functions for 'Ecdat'
  EcoCleanR               Enhancing Data Quality of Biogeographic Ranges
                          with Application for Marine Invertebrates
  EcoDiet                 Estimating a Diet Matrix from Biotracer and
                          Stomach Content Data
  EcoEnsemble             A General Framework for Combining Ecosystem
                          Models
  EcoMetrics              Econometrics Model Building
  EcoNetGen               Simulate and Sample from Ecological Interaction
                          Networks
  EcoNiche                Community Niche Position and Width Estimation
                          Tools
  EcoTroph                An Implementation of the EcoTroph Ecosystem
                          Modelling Approach
  Ecohydmod               Ecohydrological Modelling
  EconAndProdEfficiency   Economic and Production Efficiency
  EconCausal              Causal Analysis for Macroeconomic Time Series
                          (ECM-MARS, BSTS, Bayesian GLM-AR(1))
  EconGeo                 Computing Key Indicators of the Spatial
                          Distribution of Economic Activities
  EcotoneFinder           Characterising and Locating Ecotones and
                          Communities
  Ecume                   Equality of 2 (or k) Continuous Univariate and
                          Multivariate Distributions
  EdSurvey                Analysis of NCES Education Survey and
                          Assessment Data
  EffectLiteR             Average and Conditional Effects
  EffectStars             Visualization of Categorical Response Models
  EffectStars2            Effect Stars
  EffectTreat             Prediction of Therapeutic Success
  EfficientMaxEigenpair   Efficient Initials for Computing the Maximal
                          Eigenpair
  EgoCor                  Simple Presentation of Estimated Exponential
                          Semi-Variograms
  EleChemr                Electrochemical Reactions Simulation
  ElectDecomp             Decomposition of Seats-to-Votes Distortions
  ElicitationWizard       LLM-Based Bayesian Prior Elicitation Wizard
  Elja                    Linear, Logistic and Generalized Linear Models
                          Regressions for the EnvWAS/EWAS Approach
  ElliptCopulas           Inference of Elliptical Distributions and
                          Copulas
  EloChoice               Preference Rating for Visual Stimuli Based on
                          Elo Ratings
  EloOptimized            Optimized Elo Rating Method for Obtaining
                          Dominance Ranks
  EloRating               Animal Dominance Hierarchies by Elo Rating
  EmbedSOM                Fast Embedding Guided by Self-Organizing Map
  EmiR                    Evolutionary Minimizer for R
  EmissV                  Tools for Create Emissions for Air Quality
                          Models
  EmpiricalBrownsMethod   Uses Brown's method to combine p-values from
                          dependent tests
  EmpiricalCalibration    Routines for Performing Empirical Calibration
                          of Observational Study Estimates
  EmpiricalDynamics       Empirical Discovery of Differential Equations
                          from Time Series Data
  EnTraineR               Enhanced Teaching Assistant (AI) for
                          Statistical Analysis
  EncompassTest           Direct Multi-Step Forecast Based Comparison of
                          Nested Models via an Encompassing Test
  EnergyOnlineCPM         Distribution Free Multivariate Control Chart
                          Based on Energy Test
  EngrEcon                Engineering Economics Analysis for Engineering
                          Projects Cost Analysis
  EngrExpt                Data sets from "Introductory Statistics for
                          Engineering Experimentation"
  EnhancedVolcano         Publication-ready volcano plots with enhanced
                          colouring and labeling
  EnrichIntersect         Enrichment Analysis and Intersecting Sankey
                          Diagram
  EnsCat                  Clustering of Categorical Data
  EntropicStatistics      Functions Based on Entropic Statistics
  EntropyEstimation       Estimation of Entropy and Related Quantities
  EnvCpt                  Detection of Structural Changes in Climate and
                          Environment Time Series
  EnvNJ                   Whole Genome Phylogenies Using Sequence
                          Environments
  EnvNicheR               Niche Estimation
  EnvStats                Package for Environmental Statistics, Including
                          US EPA Guidance
  EnviroPRA2              Environmental Probabilistic Risk Assessment
                          Tools
  Epi                     Statistical Analysis in Epidemiology
  EpiContactTrace         Epidemiological Tool for Contact Tracing
  EpiCurve                Plot an Epidemic Curve
  EpiDISH                 Epigenetic Dissection of
                          Intra-Sample-Heterogeneity
  EpiDynamics             Dynamic Models in Epidemiology
  EpiEstim                Estimate Time Varying Reproduction Numbers from
                          Epidemic Curves
  EpiForsk                Code Sharing at the Department of Epidemiology
                          Research at Statens Serum Institut
  EpiILM                  Spatial and Network Based Individual Level
                          Models for Epidemics
  EpiInvert               Variational Techniques in Epidemiology
  EpiLPS                  A Fast and Flexible Bayesian Tool for
                          Estimating Epidemiological Parameters
  EpiModel                Mathematical Modeling of Infectious Disease
                          Dynamics
  EpiNova                 Flexible Extended State-Space Epidemiological
                          Models with Modern Inference
  EpiPvr                  Estimating Plant Pathogen Epidemiology
                          Parameters from Laboratory Assays
  EpiReport               Epidemiological Report
  EpiSemble               Ensemble Based Machine Learning Approach for
                          Predicting Methylation States
  EpiSignalDetection      Signal Detection Analysis
  EpiSimR                 A 'Shiny' App to Simulate the Dynamics of
                          Epidemic and Endemic Diseases Spread
  EpiStandard             Directly Standardise Rates by Age
  EpiStats                Tools for Epidemiologists
  EpiTest                 Test for Gene x Gene Interactions in
                          Bi-Parental Populations
  EpidigiR                Digital Epidemiological Analysis and
                          Visualization Tools
  EpistemicGameTheory     Constructing an Epistemic Model for the Games
                          with Two Players
  Epoch                   IEEG (Intracranial Electroencephalography)
                          Epoch Data Tools
  Equalden.HD             Testing the Equality of a High Dimensional Set
                          of Densities
  EquiSurv                Modeling, Confidence Intervals and Equivalence
                          of Survival Curves
  EquiTrends              Equivalence Testing for Pre-Trends in
                          Difference-in-Differences Designs
  EraBrewer               Color Palettes from the Album Covers of Each
                          Taylor Swift Era
  ErlangC                 Solve Erlang-C Model
  EstCRM                  Calibrating Parameters for the Samejima's
                          Continuous IRT Model
  EstHTSeed               Hydro Time Analysis of Seed Germination
  EstemPMM                Polynomial Maximization Method for Non-Gaussian
                          Regression
  EstimDiagnostics        Diagnostic Tools and Unit Tests for Statistical
                          Estimators
  EstimateBreed           Estimation of Environmental Variables and
                          Genetic Parameters
  EstimateGroupNetwork    Perform the Joint Graphical Lasso and Selects
                          Tuning Parameters
  EstimationTools         Maximum Likelihood Estimation for Probability
                          Functions from Data Sets
  EthSEQ                  Ethnicity Annotation from Whole-Exome and
                          Targeted Sequencing Data
  EuclideanSD             An Euclidean View of Center and Spread
  Euclimatch              Euclidean Climatch Algorithm
  Eunomia                 Standard Dataset Manager for Observational
                          Medical Outcomes Partnership Common Data Model
                          Sample Datasets
  EvCombR                 Evidence Combination in R
  Evacluster              Evaluation Clustering Methods for Disease
                          Subtypes Diagnosis
  EvalTest                Tools for Evaluating Diagnostic Test
                          Performance
  EvaluateCore            Quality Evaluation of Core Collections
  EvaluationMeasures      Collection of Model Evaluation Measure
                          Functions
  Evapotranspiration      Modelling Actual, Potential and Reference Crop
                          Evapotranspiration
  EventPredInCure         Event Prediction Including Cured Population
  EventWinRatios          Event-Specific Win Ratios for Terminal and
                          Non-Terminal Events
  EvidenceSynthesis       Synthesizing Causal Evidence in a Distributed
                          Research Network
  EviewsR                 A Seamless Integration of 'EViews' and R
  EvoPhylo                Pre- And Postprocessing of Morphological Data
                          from Relaxed Clock Bayesian Phylogenetics
  EvolutionaryGames       Important Concepts of Evolutionary Game Theory
  Evomorph                Evolutionary Morphometric Simulation
  EwR                     Econometrics with R
  ExGaussEstim            Quantile Maximization Likelihood Estimation and
                          Bayesian Ex-Gaussian Estimation
  ExNRuleEnsemble         A k Nearest Neibour Ensemble Based on Extended
                          Neighbourhood Rule
  ExPanDaR                Explore Your Data Interactively
  ExPosition              Exploratory Analysis with the Singular Value
                          Decomposition
  Exact                   Unconditional Exact Test
  ExactCIdiff             Inductive Confidence Intervals for the
                          Difference Between Two Proportions
  ExactCIone              Admissible Exact Intervals for One-Dimensional
                          Discrete Distributions
  ExactCox                Exact Test and Exact Confidence Interval for
                          the Cox Model
  ExactMed                Exact Mediation Analysis for Binary Outcomes
  ExactMultinom           Multinomial Goodness-of-Fit Tests
  ExactVaRTest            Exact Finite-Sample Value-at-Risk Back-Testing
  ExamPAData              Data Sets for Predictive Analytics Exam
  ExceedanceTools         Confidence/Credible Regions for Exceedance Sets
                          and Contour Lines
  ExcelFunctionsR         Imports Excel Functions to R
  ExcessMass              Excess Mass Calculation and Plots
  ExclusionTable          Creating Tables of Excluded Observations
  ExhaustiveSearch        A Fast and Scalable Exhaustive Feature
                          Selection Framework
  ExpAnalysis3d           Pacote Para Analise De Experimentos Com
                          Graficos De Superficie Resposta
  ExpBites                Analyzing Human Exposure to Mosquito Biting
  ExpDE                   Modular Differential Evolution for
                          Experimenting with Operators
  ExpDes                  Experimental Designs Package
  ExpGenetic              Non-Additive Expression Analysis of Hybrid
                          Offspring
  ExpRep                  Experiment Repetitions
  ExperimentHub           Client to access ExperimentHub resources
  ExpertChoice            Design of Discrete Choice and Conjoint Analysis
  ExplodeLayout           Calculate Exploded Coordinates Based on
                          Original Node Coordinates and Node Clustering
                          Membership
  ExploreTheData          A Set of Tools for Exploratory Data Analysis
  ExposR                  Models Topographic Exposure to Hurricane Winds
  ExpressionCellNet       Network-Based Analysis of Gene Expression
                          Perturbations
  ExtDist                 Extending the Range of Functions for
                          Probability Distributions
  ExtMallows              An Extended Mallows Model and Its Hierarchical
                          Version for Ranked Data Aggregation
  ExtendedABSurvTDC       Survival Analysis using Indicators under Time
                          Dependent Covariates
  ExtendedLaplace         The Extended Laplace Distribution
  ExtrPatt                Spatial Dependencies and Indices for Extremes
  ExtractTrainData        Extract Values from Raster
  ExtremalDep             Extremal Dependence Models
  ExtremeBounds           Extreme Bounds Analysis (EBA)
  ExtremeCI               Realistic Confidence Intervals for
                          Non-Stationary Extreme Value Statistics
  ExtremeRisks            Extreme Risk Measures
  EzGP                    Easy-to-Interpret Gaussian Process Models for
                          Computer Experiments
  FABInference            FAB p-Values and Confidence Intervals
  FACTMLE                 Maximum Likelihood Factor Analysis
  FADA                    Variable Selection for Supervised
                          Classification in High Dimension
  FADPclust               Functional Data Clustering Using Adaptive
                          Density Peak Detection
  FAIRmaterials           Ontology Tools with Data FAIRification in
                          Development
  FAMetA                  Fatty Acid Metabolic Analysis
  FAMoS                   A Flexible Algorithm for Model Selection
  FAO56                   Evapotranspiration Based on FAO Penman-Monteith
                          Equation
  FAOSTAT                 Download Data from the FAOSTAT Database
  FAPA                    Factor Analytic Profile Analysis of Ipsatized
                          Data
  FARDEEP                 Fast and Robust Deconvolution of Tumor
                          Infiltrating Lymphocyte from Expression
                          Profiles using Least Trimmed Squares
  FARS                    Factor-Augmented Regression Scenarios
  FAS                     Factor-Augmented Sparse Regression Tuning-Free
                          Testing
  FAST.R                  Analyze and Visualize FAST-Generated Data
  FAVA                    Quantify Compositional Variability Across
                          Relative Abundance Vectors
  FAVAR                   Bayesian Analysis of a FAVAR Model
  FAdist                  Distributions that are Sometimes Used in
                          Hydrology
  FAfA                    Factor Analysis for All
  FAmle                   Maximum Likelihood and Bayesian Estimation of
                          Univariate Probability Distributions
  FAwR                    Functions and Datasets for "Forest Analytics
                          with R"
  FBFsearch               Algorithm for Searching the Space of Gaussian
                          Directed Acyclic Graph Models Through Moment
                          Fractional Bayes Factors
  FBMS                    Flexible Bayesian Model Selection and Model
                          Averaging
  FBN                     FISH Based Normalization and Copy Number
                          Inference of SNP Microarray Data
  FCO                     Flexible Cutoffs for Model Fit Evaluation in
                          Covariance-Based Structural Models
  FCPS                    Fundamental Clustering Problems Suite
  FCUSUM                  Fourier CUSUM Cointegration Test
  FCVAR                   Estimation and Inference for the Fractionally
                          Cointegrated VAR
  FD                      Measuring Functional Diversity (FD) from
                          Multiple Traits, and Other Tools for Functional
                          Ecology
  FDOTT                   Optimal Transport Based Testing in Factorial
                          Design
  FDRestimation           Estimate, Plot, and Summarize False Discovery
                          Rates
  FDRsamplesize2          Computing Power and Sample Size for the False
                          Discovery Rate in Multiple Applications
  FDRsampsize             Compute Sample Size that Meets Requirements for
                          Average Power and FDR
  FDX                     False Discovery Exceedance Controlling Multiple
                          Testing Procedures
  FDboost                 Boosting Functional Regression Models
  FEA                     Finite Element Modeling for R
  FENmlm                  Fixed Effects Nonlinear Maximum Likelihood
                          Models
  FER                     Financial Engineering in R
  FESta                   Fishing Effort Standardisation
  FEprovideR              Fixed Effects Logistic Model with
                          High-Dimensional Parameters
  FFD                     Freedom from Disease
  FFTrees                 Generate, Visualise, and Evaluate
                          Fast-and-Frugal Decision Trees
  FFdownload              Download Data from Kenneth French's Website
  FGLMtrunc               Truncated Functional Generalized Linear Models
  FGRepo                  Functional Genomics Repository for POST-GWAS
                          Analysis
  FGalgorithm             Flury and Gautschi algorithms
  FHDI                    Fractional Hot Deck and Fully Efficient
                          Fractional Imputation
  FHtest                  Tests for Right and Interval-Censored Survival
                          Data Based on the Fleming-Harrington Class
  FI                      Provide Functions for Forest Inventory
                          Calculations
  FIESTA                  Forest Inventory Estimation and Analysis
  FIESTAutils             Utility Functions for Forest Inventory
                          Estimation and Analysis
  FILEST                  Fine-Level Structure Simulator
  FIND                    Objective Comparison of Phase I Dose-Finding
                          Designs
  FIRM                    Flexible Integration of Single-Cell RNA-Seq
                          Data
  FITSio                  FITS (Flexible Image Transport System)
                          Utilities
  FKF                     Fast Kalman Filter
  FKSUM                   Fast Kernel Sums
  FKmL                    Fréchet Distance-Based K-Means and Extensions
                          for Longitudinal Data
  FLAG                    Flexible and Accurate Gaussian Graphical Models
  FLAME                   Interpretable Matching for Causal Inference
  FLASHMM                 Fast and Scalable Single Cell Differential
                          Expression Analysis using Mixed-Effects Models
  FLOPART                 Functional Labeled Optimal Partitioning
  FLORAL                  Fit Log-Ratio Lasso Regression for
                          Compositional Data
  FLR                     Fuzzy Logic Rule Classifier
  FLSSS                   Mining Rigs for Problems in the Subset Sum
                          Family
  FLightR                 Reconstruct Animal Paths from Solar Geolocation
                          Loggers Data
  FMAT                    The Fill-Mask Association Test
  FMAdist                 Frequentist Model Averaging Distribution
  FMC                     Factorial Experiments with Minimum Level
                          Changes
  FMCensSkewReg           Finite Mixture of Censored Regression Models
                          with Skewed Distributions
  FME                     A Flexible Modelling Environment for Inverse
                          Modelling, Sensitivity, Identifiability and
                          Monte Carlo Analysis
  FMM                     Rhythmic Patterns Modeling by FMM Models
  FMP                     Filtered Monotonic Polynomial IRT Models
  FMStable                Finite Moment Stable Distributions
  FMradio                 Factor Modeling for Radiomics Data
  FMsmsnReg               Regression Models with Finite Mixtures of Skew
                          Heavy-Tailed Errors
  FNN                     Fast Nearest Neighbor Search Algorithms and
                          Applications
  FOCI                    Feature Ordering by Conditional Independence
  FORD                    Feature Ordering by Integrated R Square
                          Dependence
  FPCA3D                  Three Dimensional Functional Component Analysis
  FPCdpca                 The FPCdpca Criterion on Distributed Principal
                          Component Analysis
  FPDclustering           PD-Clustering and Related Methods
  FPLdata                 Read in Fantasy Premier League Data
  FRACTION                Numeric Number into Fraction
  FRAPO                   Financial Risk Modelling and Portfolio
                          Optimisation with R
  FRApp                   FRAP Data Analysis Using Nonlinear Mixed Effect
                          Models with 'shiny'
  FRB                     Fast and Robust Bootstrap
  FRCC                    Fast Regularized Canonical Correlation Analysis
  FRCI                    Fuzzy & Randomized Confidence Intervals
  FREEtree                Tree Method for High Dimensional Longitudinal
                          Data
  FREQ                    FREQ: Estimate population size from capture
                          frequencies
  FRESA.CAD               Feature Selection Algorithms for Computer Aided
                          Diagnosis
  FRI                     Relative Importance of Main and Interaction
                          Effects
  FRK                     Fixed Rank Kriging
  FSA                     Simple Fisheries Stock Assessment Methods
  FSAdata                 Data to Support Fish Stock Assessment ('FSA')
                          Package
  FSDAM                   Forward Stepwise Deep Autoencoder-Based
                          Monotone NLDR
  FSK2R                   An Interface Between the 'FSKX' Standard and
                          'R'
  FSM                     Finite Selection Model
  FSSF                    Generate Fully-Sequential Space-Filling Designs
                          Inside a Unit Hypercube
  FSTpackage              Unified Sequence-Based Association Tests
                          Allowing for Multiple Functional Annotation
                          Scores
  FSelector               Selecting Attributes
  FSelectorRcpp           'Rcpp' Implementation of 'FSelector'
                          Entropy-Based Feature Selection Algorithms with
                          a Sparse Matrix Support
  FSinR                   Feature Selection in R
  FTSgof                  White Noise and Goodness-of-Fit Tests for
                          Functional Time Series
  FUNTA                   Functional Tangential Angle Pseudo-Depth
  FVDDPpkg                Implement Fleming-Viot-Dependent Dirichlet
                          Processes
  FWDselect               Selecting Variables in Regression Models
  FWRGB                   Fresh Weight Determination from Visual Image of
                          the Plant
  FaaSr                   'FaaSr' Local Test Development Package
  FactChar                Characterization and Diagnostic Tools for
                          Factorial Block Designs
  FactEff                 Efficiencies of Block Designs for Factorial and
                          Fractional Factorial Experiments
  FactoClass              Combination of Factorial Methods and Cluster
                          Analysis
  FactoInvestigate        Automatic Description of Factorial Analysis
  FactoMineR              Multivariate Exploratory Data Analysis and Data
                          Mining
  FactorAssumptions       Set of Assumptions for Factor and Principal
                          Component Analysis
  FactorCopula            Factor, Bi-Factor, Second-Order and Factor Tree
                          Copula Models
  FactorCopulaModel       Factor Copula Models
  FactorHet               Estimate Heterogeneous Effects in Factorial
                          Experiments Using Grouping and Sparsity
  Factoshiny              Perform Factorial Analysis from 'FactoMineR'
                          with a Shiny Application
  Fahrmeir                Data from the Book "Multivariate Statistical
                          Modelling Based on Generalized Linear Models",
                          First Edition, by Ludwig Fahrmeir and Gerhard
                          Tutz
  FakeDataR               Privacy-Preserving Synthetic Data for 'LLM'
                          Workflows
  FamEvent                Family Age-at-Onset Data Simulation and
                          Penetrance Estimation
  Familias                Probabilities for Pedigrees Given DNA Data
  Families                Kinship Ties in (Virtual) Multi-Generation
                          Populations
  FastBandChol            Fast Estimation of a Covariance Matrix by
                          Banding the Cholesky Factor
  FastCUB                 Fast Estimation of CUB Models via Louis'
                          Identity
  FastGP                  Efficiently Using Gaussian Processes with Rcpp
                          and RcppEigen
  FastGaSP                Fast and Exact Computation of Gaussian
                          Stochastic Process
  FastHamming             Fast Computation of Pairwise Hamming Distances
  FastImputation          Learn from Training Data then Quickly Fill in
                          Missing Data
  FastJM                  Semi-Parametric Joint Modeling of Longitudinal
                          and Survival Data
  FastKM                  A Fast Multiple-Kernel Method Based on a
                          Low-Rank Approximation
  FastKNN                 Fast k-Nearest Neighbors
  FastKRR                 Kernel Ridge Regression using 'RcppArmadillo'
  FastPCS                 FastPCS Robust Fit of Multivariate Location and
                          Scatter
  FastRCS                 Fits the FastRCS Robust Multivariable Linear
                          Regression Model
  FastRWeb                Fast Interactive Framework for Web Scripting
                          Using R
  FastRet                 Retention Time Prediction in Liquid
                          Chromatography
  FastSegmentation        Unsupervised Cell Segmentation by Fast Gaussian
                          Processes
  FastStepGraph           A Fast Algorithm for Sparse Precision Matrix
                          Estimation
  FastSurvival            Fast Kaplan-Meier, Log-Rank, and Hazard Ratio
                          Estimation for Survival Analysis
  FastUtils               Fast, Readable Utility Functions
  FatTailsR               Kiener Distributions and Fat Tails in Finance
                          and Neuroscience
  FateID                  Quantification of Fate Bias in Multipotent
                          Progenitors
  FaultTree               Fault Trees for Risk and Reliability Analysis
  FeaLect                 Scores Features for Feature Selection
  FeatureExtraction       Generating Features for a Cohort
  FeatureImpCluster       Feature Importance for Partitional Clustering
  FeatureTerminatoR       Feature Selection Engine to Remove Features
                          with Minimal Predictive Power
  FedData                 Download Geospatial Data Available from Several
                          Federated Data Sources
  FedIRT                  Federated Item Response Theory Models
  FertNet                 Process Data from the Social Networks and
                          Fertility Survey
  Fgmutils                Forest Growth Model Utilities
  FiRE                    Finder of Rare Entities (FiRE)
  FiSh                    Fisher-Shannon Method
  FielDHub                A Shiny App for Design of Experiments in Life
                          Sciences
  FieldSimR               Simulation of Plot Errors and Phenotypes in
                          Plant Breeding Field Trials
  FilmsGmooG              IMDb Film Ratings from the Summer of 2022
  FinAna                  Financial Analysis and Regression Diagnostic
                          Analysis
  FinCal                  Time Value of Money, Time Series Analysis and
                          Computational Finance
  FinCovRegularization    Covariance Matrix Estimation and Regularization
                          for Finance
  FinNet                  Quickly Build and Manipulate Financial Networks
  FinTS                   Companion to Tsay (2005) Analysis of Financial
                          Time Series
  FinanceGraphs           Flexible Graphs for Analysis of Financial Data
                          and Time Series
  FinancialMath           Financial Mathematics for Actuaries
  FindIt                  Finding Heterogeneous Treatment Effects
  FinePop                 Fine-Scale Population Analysis
  FisPro                  Fuzzy Inference System Design and Optimization
  Fiscal                  Income Tax Calculations (UK)
  FishDiveR               Classify Aquatic Animal Behaviours from
                          Vertical Movement Data
  FishPhyloMaker          Phylogenies for a List of Finned-Ray Fishes
  FishProxCompAnalyzer    Proximate Composition Analysis of Fish and Feed
                          Ingredients
  FisherEM                The FisherEM Algorithm to Simultaneously
                          Cluster and Visualize High-Dimensional Data
  FitDynMix               Estimation of Dynamic Mixtures
  FitUltD                 Fit Univariate Mixed and Usual Distributions
  FixSeqMTP               Fixed Sequence Multiple Testing Procedures
  FixedPoint              Algorithms for Finding Fixed Point Vectors of
                          Functions
  FjordLight              Available Light Within the Water Column and on
                          the Seafloor of Arctic Fjords
  FlexDir                 Tools to Work with the Flexible Dirichlet
                          Distribution
  FlexGAM                 Generalized Additive Models with Flexible
                          Response Functions
  FlexParamCurve          Tools to Fit Flexible Parametric Curves
  FlexRL                  A Flexible Model for Record Linkage
  FlexReg                 Regression Models for Bounded Continuous and
                          Discrete Responses
  FlexScan                Flexible Scan Statistics
  FlexVarJM               Estimate Joint Models with Subject-Specific
                          Variance
  FlickrAPI               Access to Flickr API
  FloodFreqPlot           Flood Probability Plotting and Graphical
                          Frequency Analysis
  FlowRegEnvCost          The Environmental Costs of Flow Regulation
  FlowScreen              Daily Streamflow Trend and Change Point
                          Screening
  FlowerMate              Reciprocity Indices for Style-Polymorphic
                          Plants
  Fluidigm                Handling Fluidigm Data
  FluxPoint               Change Point Detection for Non-Stationary and
                          Cross-Correlated Time Series
  FluxSeparator           Separation of Diffusive and Ebullitive Fluxes
  FlyingR                 Simulation of Bird Flight Range
  FnR                     Inbreeding and Numerator Relationship
                          Coefficients
  FoCo2                   Coherent Forecast Combination for Linearly
                          Constrained Multiple Time Series
  FoRDM                   Forest Many-Objective Robust Decision Making
                          ('FoRDM')
  FoReco                  Forecast Reconciliation
  FoRecoML                Forecast Reconciliation with Machine Learning
  ForCausality            A Curated Collection of 'Causal Inference'
                          Datasets and Tools
  ForIT                   Functions to Estimate Tree Volume and Phytomass
                          in the Italian Forest Inventory 2005
  ForLion                 'ForLion' Algorithm to Find D-Optimal Designs
                          for Experiments
  ForagingOrg             Organization Measures for Visual Foraging
  ForeCA                  Forecastable Component Analysis
  ForeComp                Size-Power Tradeoff Visualization for Equal
                          Predictive Ability of Two Forecasts
  ForecastCombinations    Forecast Combinations
  ForecastingEnsembles    Time Series Forecasting Using 23 Individual
                          Models
  ForestDisc              Forest Discretization
  ForestElementsR         Data Structures and Functions for Working with
                          Forest Data
  ForestFit               Statistical Modelling for Plant Size
                          Distributions
  ForestGapR              Tropical Forest Canopy Gaps Analysis
  ForestTools             Tools for Analyzing Remote Sensing Forest Data
  FormShare               A Simple Connection Between the 'FormShare App'
                          and 'R' for Advanced Analytics
  FormulR                 Comprehensive Tools for Drug Formulation
                          Analysis and Visualization
  Formula                 Extended Model Formulas
  FossilSim               Simulation and Plots for Fossil and Taxonomy
                          Data
  FossilSimShiny          Shiny Application for 'FossilSim'
  FourScores              A Game for Human vs. Human or Human vs. AI
  FourWayHMM              Parsimonious Hidden Markov Models for Four-Way
                          Data
  FourgameteP             FourGamete Test
  FrF2                    Fractional Factorial Designs with 2-Level
                          Factors
  FrF2.catlg128           Catalogues of Resolution IV 128 Run 2-Level
                          Fractional Factorials Up to 33 Factors that Do
                          Have 5-Letter Words
  FracFixR                Compositional Statistical Framework for RNA
                          Fractionation Analysis
  FracKrigingR            Spatial Multivariate Data Modeling
  FractalParameterEstimation
                          Simulation and Parameter Estimation of
                          Randomized Sierpinski Carpets using the
                          p-p-p-q-Model
  Fragman                 Fragment Analysis in R
  FrailtyCompRisk         Competing Risks Models for Multi-Center
                          Survival Data with Frailty
  Frames2                 Estimation in Dual Frame Surveys
  FreqProf                Frequency Profiles Computing and Plotting
  Fstability              Calculate Feature Stability
  FuelDeep3D              3D Fuel Segmentation Using Terrestrial Laser
                          Scanning and Deep Learning
  FunChisq                Model-Free Functional Chi-Squared and Exact
                          Tests
  FunSurv                 Modeling Time-to-Event Data with Functional
                          Predictors
  FunWithNumbers          Fun with Fractions and Number Sequences
  FuncDiv                 Compute Contributional Diversity Metrics
  FunctanSNP              Functional Analysis (with Interactions) for
                          Dense SNP Data
  FunctionalCalibration   Aggregated Functional Data Calibration using
                          Splines and Wavelets
  FunnelPlotR             Funnel Plots for Comparing Institutional
                          Performance
  FusionLearn             Fusion Learning
  FuzzyAHP                (Fuzzy) AHP Calculation
  FuzzyClass              Fuzzy and Non-Fuzzy Classifiers
  FuzzyImputationTest     Imputation Procedures and Quality Tests for
                          Fuzzy Data
  FuzzyM                  Fuzzy Cognitive Maps Operations
  FuzzyNumbers            Tools to Deal with Fuzzy Numbers
  FuzzyNumbers.Ext.2      Apply Two Fuzzy Numbers on a Monotone Function
  FuzzyPovertyR           Estimation of Fuzzy Poverty Measures
  FuzzyQ                  Fuzzy Quantification of Common and Rare Species
  FuzzyR                  Fuzzy Logic Toolkit for R
  FuzzyResampling         Resampling Methods for Triangular and
                          Trapezoidal Fuzzy Numbers
  FuzzySTs                Fuzzy Statistical Tools
  FuzzySimRes             Simulation and Resampling Methods for Epistemic
                          Fuzzy Data
  FuzzySpec               Fuzzy Spectral Clustering with
                          Variable-Weighted Adjacency Matrices
  FuzzyStatTra            Statistical Methods for Trapezoidal Fuzzy
                          Numbers
  G2Sd                    Grain-Size Statistics and Description of
                          Sediment
  GA                      Genetic Algorithms
  GABB                    Facilitation of Data Preparation and Plotting
                          Procedures for RDA and PCA Analyses
  GACE                    Generalized Adaptive Capped Estimator for Time
                          Series Forecasting
  GACFF                   Genetic Similarity in User-Based Collaborative
                          Filtering
  GAD                     Analysis of Variance from General Principles
  GADAG                   A Genetic Algorithm for Learning Directed
                          Acyclic Graphs
  GAGAs                   Global Adaptive Generative Adjustment Algorithm
                          for Generalized Linear Models
  GAGBLUP                 Genetic Algorithm Assisted Genomic Best Liner
                          Unbiased Prediction
  GAIPE                   Graphical Extension with Accuracy in Parameter
                          Estimation (GAIPE)
  GALAHAD                 Geometry-Adaptive Lyapunov-Assured Hybrid
                          Optimizer with Softplus Reparameterization and
                          Trust-Region Control
  GALLO                   Genomic Annotation in Livestock for Positional
                          Candidate LOci
  GAMens                  Applies GAMbag, GAMrsm and GAMens Ensemble
                          Classifiers for Binary Classification
  GANPA                   Gene Association Network-Based Pathway Analysis
                          (GANPA)
  GANPAdata               The GANPA Datasets Package
  GAPR                    Generalized Association Plots
  GARCH.X                 Estimation and Exogenous Covariate Selection
                          for ARCH-m(X), Additive ARCH-m(x), and GARCH-X
                          Models
  GARCHIto                Class of GARCH-Ito Models
  GARCHSK                 Estimating a GARCHSK Model and GJRSK Model
  GARCOM                  Gene and Region Counting of Mutations
                          ("GARCOM")
  GAReg                   Genetic Algorithms in Regression
  GAparsimony             Searching Parsimony Models with Genetic
                          Algorithms
  GB2                     Generalized Beta Distribution of the Second
                          Kind: Properties, Likelihood, Estimation
  GB2group                Estimation of the Generalised Beta Distribution
                          of the Second Kind from Grouped Data
  GB5mcPred               Gradient Boosting Algorithm for Predicting
                          Methylation States
  GBASS                   Generalized Bayesian Adaptive Smoothing Splines
  GBJ                     Generalized Berk-Jones Test for Set-Based
                          Inference in Genetic Association Studies
  GBOP2                   Generalized Bayesian Optimal Phase II Design
                          (G-BOP2)
  GCCfactor               GCC Estimation of the Multilevel Factor Model
  GCD                     Global Charcoal Database
  GCEstim                 Regression Coefficients Estimation Using the
                          Generalized Cross Entropy
  GCPBayes                Bayesian Meta-Analysis of Pleiotropic Effects
                          Using Group Structure
  GCPM                    Generalized Credit Portfolio Model
  GCSM                    Implements Generic Composite Similarity Measure
  GCalignR                Simple Peak Alignment for Gas-Chromatography
                          Data
  GCubeR                  Estimation of Forest Volume, Biomass, and
                          Carbon
  GD                      Geographical Detectors for Assessing Spatial
                          Factors
  GDAdata                 Datasets for the Book Graphical Data Analysis
                          with R
  GDAtools                Geometric Data Analysis
  GDILM.ME                Spatial Modeling of Infectious Diseases with
                          Co-Variate Error
  GDILM.SIR               Inference for Infectious Disease Transmission
                          in SIR Framework
  GDINA                   The Generalized DINA Model Framework
  GDPuc                   Easily Convert GDP Data
  GDSARM                  Gauss - Dantzig Selector: Aggregation over
                          Random Models
  GE                      General Equilibrium Modeling
  GEC                     Generalized Exponentiated Composite
                          Distributions
  GECal                   Generalized Entropy Calibration
  GEEaSPU                 Adaptive Association Tests for Multiple
                          Phenotypes using Generalized Estimating
                          Equations (GEE)
  GEEmediate              Mediation Analysis for Generalized Linear
                          Models Using the Difference Method
  GEInfo                  Gene-Environment Interaction Analysis
                          Incorporating Prior Information
  GEInter                 Robust Gene-Environment Interaction Analysis
  GEMSS                   Generalization Error Minimization in
                          SubSampling for Gaussian Processes
  GENEAclassify           Segmentation and Classification of
                          Accelerometer Data
  GENEAcore               Pre-Processing of 'GENEActiv' Data
  GENEAread               Package for Reading Binary Files
  GENLIB                  Genealogical Data Analysis
  GENMETA                 Implements Generalized Meta-Analysis Using
                          Iterated Reweighted Least Squares Algorithm
  GEOmap                  Topographic and Geologic Mapping
  GEOmetadb               A compilation of metadata from NCBI GEO
  GEOquery                Get data from NCBI Gene Expression Omnibus
                          (GEO)
  GESE                    Gene-Based Segregation Test
  GET                     Global Envelopes
  GETdesigns              Generalized Extended Triangular Designs
                          ('GETdesigns')
  GEVACO                  Joint Test of Gene and GxE Interactions via
                          Varying Coefficients
  GEVcdn                  GEV Conditional Density Estimation Network
  GEint                   Misspecified Models for Gene-Environment
                          Interaction
  GEmetrics               Best Linear Unbiased Prediction of
                          Genotype-by-Environment Metrics
  GFA                     Group Factor Analysis
  GFD                     Tests for General Factorial Designs
  GFDmcv                  General Hypothesis Testing Problems for
                          Multivariate Coefficients of Variation
  GFDrmst                 Multiple RMST-Based Tests in General Factorial
                          Designs
  GFDrmtl                 Multiple RMTL-Based Tests for Competing Risks
                          Data in General Factorial Designs
  GFDsurv                 Tests for Survival Data in General Factorial
                          Designs
  GFE                     Gross Flows Estimation under Complex Surveys
  GFFStrandLoc            Strand-Wise Gene and Protein Extraction from
                          GFF3 Files
  GFGM.copula             Generalized Farlie-Gumbel-Morgenstern Copula
  GFM                     Generalized Factor Model
  GFisher                 Generalized Fisher's Combination Tests Under
                          Dependence
  GGClassification        Gabriel Graph Based Large-Margin Classifiers
  GGEBiplots              GGE Biplots with 'ggplot2'
  GGIR                    Raw Accelerometer Data Analysis
  GGIRread                Wearable Accelerometer Data File Readers
  GGMncv                  Gaussian Graphical Models with Nonconvex
                          Regularization
  GGMridge                Gaussian Graphical Models Using Ridge Penalty
                          Followed by Thresholding and Reestimation
  GGRidge                 Graphical Group Ridge
  GGUM                    Generalized Graded Unfolding Model
  GGally                  Extension to 'ggplot2'
  GGenemy                 Audit 'ggplot2' Visualizations for
                          Accessibility and Best Practices
  GGoutlieR               Identify Individuals with Unusual Geo-Genetic
                          Patterns
  GHCNr                   Download Weather Station Data from GHCNd
  GHRexplore              Exploratory Analysis of Temporal and
                          Spatio-Temporal Health Data
  GHRmodel                Bayesian Hierarchical Modelling of
                          Spatio-Temporal Health Data
  GIC                     A General Iterative Clustering Algorithm
  GIFT                    Access to the Global Inventory of Floras and
                          Traits (GIFT)
  GIGrvg                  Random Variate Generator for the GIG
                          Distribution
  GIMMEgVAR               Group Iterative Multiple Model Estimation with
                          'graphicalVAR'
  GINAX                   Performs Genome-Wide Iterative Fine-Mapping for
                          Non-Gaussian Data using GINA-X
  GISINTEGRATION          GIS Integration
  GISSB                   Network Analysis on the Norwegian Road Network
  GISTools                Further Capabilities in Geographic Information
                          Science
  GInSARCorW              GACOS InSAR Correction Workflow
  GIplot                  Gaussian Interval Plot (GIplot)
  GJRM                    Generalised Joint Regression Modelling
  GJRM.data               Data Sets for Copula Additive Distributional
                          Regression Using R
  GK2011                  Gaines and Kuklinski (2011) Estimators for
                          Hybrid Experiments
  GLAD                    Gain and Loss Analysis of DNA
  GLBFP                   General Linear Blend Frequency Polygon Density
                          Estimation
  GLCMTextures            GLCM Textures of Raster Layers
  GLDEX                   Fitting Single and Mixture of Generalised
                          Lambda Distributions
  GLDreg                  Fit GLD Regression/Quantile/AFT Model to Data
  GLMBasedRaschEstimation
                          GLM-Based Estimation for Rasch Model Parameters
  GLMMRR                  Generalized Linear Mixed Model (GLMM) for
                          Binary Randomized Response Data
  GLMMadaptive            Generalized Linear Mixed Models using Adaptive
                          Gaussian Quadrature
  GLMMcosinor             Fit a Cosinor Model Using a Generalized Mixed
                          Modeling Framework
  GLMMselect              Bayesian Model Selection for Generalized Linear
                          Mixed Models
  GLMcat                  Generalized Linear Models for Categorical
                          Responses
  GLMpack                 Data and Code to Accompany Generalized Linear
                          Models, 2nd Edition
  GLMsData                Generalized Linear Model Data Sets
  GLSME                   Generalized Least Squares with Measurement
                          Error
  GLSUP                   Generalised Linear Step-Up Procedure for
                          Multiple Hypothesis Testing
  GLmom                   Generalized L-Moments Estimation for Extreme
                          Value Distributions
  GMAC                    Genomic Mediation Analysis with Adaptive
                          Confounding Adjustment
  GMC                     Generalized Measure of Correlation (GMC)
  GMCM                    Fast Estimation of Gaussian Mixture Copula
                          Models
  GMDH                    Short Term Forecasting via GMDH-Type Neural
                          Network Algorithms
  GMDH2                   Binary Classification via GMDH-Type Neural
                          Network Algorithms
  GMDHreg                 Regression using GMDH Algorithms
  GMMAT                   Generalized Linear Mixed Model Association
                          Tests
  GMMBoost                Likelihood-Based Boosting for Generalized Mixed
                          Models
  GMMinit                 Optimal Initial Value for Gaussian Mixture
                          Model
  GMPro                   Graph Matching with Degree Profiles
  GMSE                    Generalised Management Strategy Evaluation
                          Simulator
  GMSimpute               Generalized Mass Spectrum Missing Peaks
                          Abundance Imputation
  GMX                     Extended Graphical Model Checks for the Rasch
                          Family of Models
  GNAR                    Methods for Fitting Network Time Series Models
  GNE                     Computation of Generalized Nash Equilibria
  GNRS                    Access the 'Geographic Name Resolution Service'
  GNSSseg                 Homogenization of GNSS Series
  GOCompare               Comprehensive GO Terms Comparison Between
                          Species
  GOFShiny                Interactive Document for Working with Goodness
                          of Fit Analysis
  GOFclustering           Goodness-of-Fit Testing for Model-Based
                          Clustering
  GORCure                 Fit Generalized Odds Rate Mixture Cure Model
                          with Interval Censored Data
  GOSemSim                GO-terms Semantic Similarity Measures
  GOplot                  Visualization of Functional Analysis Data
  GOstats                 Tools for manipulating GO and microarrays
  GPAbin                  Unifying Multiple Biplot Visualisations into a
                          Single Display
  GPArotateDF             Derivative Free Gradient Projection Factor
                          Rotation
  GPArotation             Gradient Projection Factor Rotation
  GPBayes                 Tools for Gaussian Process Modeling in
                          Uncertainty Quantification
  GPCMlasso               Differential Item Functioning in Generalized
                          Partial Credit Models
  GPCsign                 Gaussian Process Classification as Described in
                          Bachoc et al. (2020)
  GPEMR                   Growth Parameter Estimation Method
  GPFDA                   Gaussian Process for Functional Data Analysis
  GPGame                  Solving Complex Game Problems using Gaussian
                          Processes
  GPL2025                 Convert Chip ID of the GPL2015 into GeneBank
                          Accession and ENTREZID
  GPLTR                   Generalized Partially Linear Tree-Based
                          Regression Model
  GPP                     Gaussian Process Projection
  GPRMortality            Gaussian Process Regression for Mortality Rates
  GPSCDF                  Generalized Propensity Score Cumulative
                          Distribution Function
  GPSeqClus               Sequential Clustering Algorithm for Location
                          Data
  GPTCM                   Generalized Promotion Time Cure Model with
                          Bayesian Shrinkage Priors
  GPTreeO                 Dividing Local Gaussian Processes for Online
                          Learning Regression
  GPUmatrix               Basic Linear Algebra with GPU
  GPareto                 Gaussian Processes for Pareto Front Estimation
                          and Optimization
  GPfit                   Gaussian Processes Modeling
  GPflexViz               Graphical Visualizations Related to Genomic
                          Prediction
  GPoM                    Generalized Polynomial Modelling
  GPpenalty               Penalized Likelihood in Gaussian Processes
  GPvam                   Maximum Likelihood Estimation of Multiple
                          Membership Mixed Models Used in Value-Added
                          Modeling
  GPvecchia               Scalable Gaussian-Process Approximations
  GRAB                    Genome-Wide Robust Analysis for Biobank Data
                          (GRAB)
  GRANDpriv               Graph Release with Assured Node Differential
                          Privacy
  GRCFE                   Generate Optimal Row-Column Factorial
                          Experiments
  GRCRegression           Modified Poisson Regression of Grouped and
                          Right-Censored Counts
  GRCdesigns              Generalized Row-Column Designs
  GREENREG                Tool for Statistical and Environmental Analysis
  GREENeR                 Geospatial Regression Equation for European
                          Nutrient Losses (GREEN)
  GREMLINS                Generalized Multipartite Networks
  GRIDCOPULA              Bivariate Copula Functions Based on Regular
                          Grid
  GRIN2                   Genomic Random Interval (GRIN)
  GRNNs                   General Regression Neural Networks Package
  GROAN                   Genomic Regression Workbench
  GRShiny                 Graded Response Model
  GRSxE                   Testing Gene-Environment Interactions Through
                          Genetic Risk Scores
  GRelevance              Graph-Based k-Sample Comparisons and Relevance
                          Analysis in High Dimensions
  GSA                     Gene Set Analysis
  GSA.UN                  Global Sensitivity Analysis Tool
  GSD                     Graph Signal Decomposition
  GSDA                    Gene Set Distance Analysis (GSDA)
  GSE                     Robust Estimation in the Presence of Cellwise
                          and Casewise Contamination and Missing Data
  GSEABase                Gene set enrichment data structures and methods
  GSED                    Group Sequential Enrichment Design
  GSEMA                   Gene Set Enrichment Meta-Analysis
  GSM                     Gamma Shape Mixture
  GSMX                    Multivariate Genomic Selection
  GSODR                   Global Surface Summary of the Day ('GSOD')
                          Weather Data Client
  GSSE                    Genotype-Specific Survival Estimation
  GSSTDA                  Progression Analysis of Disease with Survival
                          using Topological Data Analysis
  GSVA                    Gene Set Variation Analysis for Microarray and
                          RNA-Seq Data
  GSelection              Genomic Selection
  GSparO                  Group Sparse Optimization
  GTAPViz                 Automating 'GTAP' Data Processing and
                          Visualization
  GTDL                    The Generalized Time-Dependent Logistic Family
  GTEs                    Group Technical Effects
  GTRT                    Graph Theoretic Randomness Tests
  GTbasedIM               Game Theory-Based Influence Measures
  GUD                     Bayesian Modal Regression Based on the GUD
                          Family
  GUEST                   Graphical Models in Ultrahigh-Dimensional and
                          Error-Prone Data via Boosting Algorithm
  GUILDS                  Implementation of Sampling Formulas for the
                          Unified Neutral Model of Biodiversity and
                          Biogeography, with or without Guild Structure
  GUTS                    Fast Calculation of the Likelihood of a
                          Stochastic Survival Model
  GUniFrac                Generalized UniFrac Distances, Distance-Based
                          Multivariate Methods and Feature-Based
                          Univariate Methods for Microbiome Data Analysis
  GVARX                   Perform Global Vector Autoregression Estimation
                          and Inference
  GVS                     'Geocoordinate Validation Service'
  GWASExactHW             Exact Hardy-Weinburg Testing for Genome Wide
                          Association Studies
  GWASTools               Tools for Genome Wide Association Studies
  GWASbyCluster           Identifying Significant SNPs in Genome Wide
                          Association Studies (GWAS) via Clustering
  GWASinlps               Non-Local Prior Based Iterative Variable
                          Selection Tool for Genome-Wide Association
                          Studies
  GWASinspector           Comprehensive and Easy to Use Quality Control
                          of GWAS Results
  GWEX                    Multi-Site Stochastic Models for Daily
                          Precipitation and Temperature
  GWI                     Count and Continuous Generalized Variability
                          Indexes
  GWLelast                Geographically Weighted Logistic Elastic Net
                          Regression
  GWPR.light              Geographically Weighted Panel Regression
  GWRLASSO                A Hybrid Model for Spatial Prediction Through
                          Local Regression
  GWRM                    Generalized Waring Regression Model for Count
                          Data
  GWSDAT                  GroundWater Spatiotemporal Data Analysis Tool
                          (GWSDAT)
  GWalkR                  Interactive Exploratory Data Analysis Tool
  GWlasso                 Geographically Weighted Lasso
  GWmodel                 Geographically-Weighted Models
  GWnnegPCA               Geographically Weighted Non-Negative Principal
                          Components Analysis
  GWnorm                  G-Wishart Normalising Constants for Gaussian
                          Graphical Models
  GWpcor                  Geographically Weighted Partial Correlation
                          Coefficient
  GWsignif                Estimating Genome-Wide Significance for Whole
                          Genome Sequencing Studies, Either Single SNP
                          Tests or Region-Based Tests
  GaSP                    Train and Apply a Gaussian Stochastic Process
                          Model
  GalaxyR                 'Galaxy' API Implementation
  GameTheory              Cooperative Game Theory
  Gammareg                Classic Gamma Regression: Joint Modeling of
                          Mean and Shape Parameters
  GapAnalysis             Conservation Indicators Using Spatial
                          Information
  GauPro                  Gaussian Process Fitting
  GaussSuppression        Tabular Data Suppression using Gaussian
                          Elimination
  GaussianHMM1d           Inference, Goodness-of-Fit and Forecast for
                          Univariate Gaussian Hidden Markov Models
  GeDS                    Geometrically Designed Spline Regression
  GeNetIt                 Spatial Graph-Theoretic Genetic Gravity
                          Modelling
  GeRnika                 Simulation, Visualization and Comparison of
                          Tumor Evolution Data
  GenAI                   Generative Artificial Intelligence
  GenAlgo                 Classes and Methods to Use Genetic Algorithms
                          for Feature Selection
  GenBinomApps            Clopper-Pearson Confidence Interval and
                          Generalized Binomial Distribution
  GenEst                  Generalized Mortality Estimator
  GenHMM1d                Goodness-of-Fit for Zero-Inflated Univariate
                          Hidden Markov Models
  GenMarkov               Multivariate Markov Chains
  GenOU                   Sequential Change-Point Tests for Generalized
                          Ornstein-Uhlenbeck Processes
  GenOrd                  Simulation of Discrete Random Variables with
                          Given Correlation Matrix and Marginal
                          Distributions via a Gaussian or Student's t
                          Copula
  GenSA                   R Functions for Generalized Simulated Annealing
  GenTag                  Generate Color Tag Sequences
  GenTwoArmsTrialSize     Generalized Two Arms Clinical Trial Sample Size
                          Calculation
  GenWin                  Spline Based Window Boundaries for Genomic
                          Analyses
  GencoDymo2              Comprehensive Analysis of 'GENCODE' Annotations
                          and Splice Site Motifs
  GenderInfer             This is a Collection of Functions to Analyse
                          Gender Differences
  GeneCycle               Identification of Periodically Expressed Genes
  GeneF                   Package for Generalized F-Statistics
  GeneNMF                 Non-Negative Matrix Factorization for
                          Single-Cell Omics
  GeneNet                 Modeling and Inferring Gene Networks
  GenePopStats            Population Genetics Statistics for Selective
                          Sweep
  GeneScape               Simulation of Single Cell RNA-Seq Data with
                          Complex Structure
  GeneScoreR              Gene Scoring from Count Tables
  GeneralOaxaca           Blinder-Oaxaca Decomposition for Generalized
                          Linear Model
  GeneralizedHyperbolic   The Generalized Hyperbolic Distribution
  GeneralizedUmatrix      Credible Visualization for Two-Dimensional
                          Projections of Data
  GeneralizedUmatrixGPU   Credible Visualization for Two-Dimensional
                          Projections of Data
  GeneralizedWendland     Fully Parameterized Generalized Wendland
                          Covariance Function
  GenerateIndexPedigree   Generate Pedigrees for Index Case Based on US
                          Census Data
  GenericML               Generic Machine Learning Inference
  GeneticSubsetter        Identify Favorable Subsets of Germplasm
                          Collections
  GenoPop                 Genotype Imputation and Population Genomics
                          Efficiently from Variant Call Formatted (VCF)
                          Files
  GenoTriplo              Genotyping Triploids (or Diploids) from
                          Luminescence Data
  GenomeAdmixR            Simulate Admixture of Genomes
  GenomeInfoDb            Utilities for manipulating chromosome names,
                          including modifying them to follow a particular
                          naming style
  GenomicAlignments       Representation and manipulation of short
                          genomic alignments
  GenomicDataCommons      NIH / NCI Genomic Data Commons Access
  GenomicFeatures         Query the gene models of a given
                          organism/assembly
  GenomicInteractions     Utilities for handling genomic interaction data
  GenomicRanges           Representation and manipulation of genomic
                          intervals
  GenomicSig              Computation of Genomic Signatures
  GenomicTools.fileHandler
                          File Handlers for Genomic Data Analysis
  GeoAdjust               Accounting for Random Displacements of True GPS
                          Coordinates of Data
  GeoDensityR             Generate Density Rasters from Polygon and
                          Census Data
  GeoFIS                  Spatial Data Processing for Decision Making
  GeoModels               Procedures for Gaussian and Non Gaussian
                          Geostatistical (Large) Data Analysis
  GeoMongo                Geospatial Queries Using 'PyMongo'
  GeoRange                Calculating Geographic Range from Occurrence
                          Data
  GeoThinneR              Efficient Spatial Thinning of Species
                          Occurrences
  GeoTox                  Spatiotemporal Mixture Risk Assessment
  GeoWeightedModel        User-Friendly Interface for
                          Geographically-Weighted Models
  GeodRegr                Geodesic Regression
  GeomArchetypal          Finds the Geometrical Archetypal Analysis of a
                          Data Frame
  GeometricMorphometricsMix
                          Heterogeneous Methods for Shape and Other
                          Multidimensional Data
  GephiForR               'Gephi' Network Visualization
  GerminaR                Indices and Graphics for Assess Seed
                          Germination Process
  GetBCBData              Imports Datasets from BCB (Central Bank of
                          Brazil) using Its Official API
  GetDFPData2             Reading Annual and Quarterly Financial Reports
                          from B3
  GetFREData              Reading FRE Corporate Data of Public Traded
                          Companies from B3
  GetLattesData           Reading Bibliometric Data from Lattes Platform
  GetQuandlData           Fast and Cached Import of Data from 'Quandl'
                          Using the 'json API'
  GetTDData               Get Data for Brazilian Bonds (Tesouro Direto)
  GetoptLong              Parsing Command-Line Arguments
  Ghat                    Quantifying Evolution and Selection on Complex
                          Traits
  Ghost                   Missing Data Segments Imputation in
                          Multivariate Streams
  GiANT                   Gene Set Uncertainty in Enrichment Analysis
  GiRaF                   Gibbs Random Fields Analysis
  Gifi                    Multivariate Analysis with Optimal Scaling
  GillespieSSA            Gillespie's Stochastic Simulation Algorithm
                          (SSA)
  GillespieSSA2           Gillespie's Stochastic Simulation Algorithm for
                          Impatient People
  GimmeMyPlot             Graphical Utilities for Visualizing and
                          Exploring Data
  GimmeMyStats            Statistics Utilities
  Gini                    Gini Coefficient
  GiniDecompLY            Gini Decomposition by Income Sources
  GiniDistance            A New Gini Correlation Between Quantitative and
                          Qualitative Variables
  GitAI                   Extracts Knowledge from 'Git' Repositories
  GitStats                Standardized Git Repository Data
  GlarmaVarSel            Variable Selection in Sparse GLARMA Models
  Glarmadillo             Solve the Graphical Lasso Problem with
                          'Armadillo'
  GlmSimulatoR            Creates Ideal Data for Generalized Linear
                          Models
  GlobalAncova            Global test for groups of variables via model
                          comparisons
  GlobalOptions           Generate Functions to Get or Set Global Options
  Gmedian                 Geometric Median, k-Medians Clustering and
                          Robust Median PCA
  Gmisc                   Descriptive Statistics, Transition Plots, and
                          More
  GmooG                   Datasets for the Book 'Getting (more out of)
                          Graphics'
  GmptzCurve              Gompertz Curve Fitting
  GoFKernel               Testing Goodness-of-Fit with the Kernel Density
                          Estimator
  GoMiner                 Automate the Mapping Between a List of Genes
                          and Gene Ontology Categories
  GofCens                 Goodness-of-Fit Methods for Right-Censored Data
  GomoGomonoMi            Animate Text using the 'Animate.css' Library
  GoodFibes               Detection and Reconstruction of Muscle Fibers
                          from diceCT Image Data
  GoodFitSBM              Monte Carlo Goodness-of-Fit Tests for
                          Stochastic Block Models
  GoodmanKruskal          Association Analysis for Categorical Variables
  Goodreader              Scrape and Analyze 'Goodreads' Book Data
  GoogleKnowledgeGraphR   Retrieve Information from 'Google Knowledge
                          Graph' API
  GowerSom                Self-Organizing Maps for Mixed-Attribute Data
                          Using Gower Distance
  GpGp                    Fast Gaussian Process Computation Using
                          Vecchia's Approximation
  GrFA                    Group Factor Analysis
  GrabSVG                 Granularity-Based Spatially Variable Genes
                          Identifications
  Grace                   Graph-Constrained Estimation and Hypothesis
                          Tests
  GramQuad                Gram Quadrature
  GraphRankTest           Rank in Similarity Graph Edge-Count Two-Sample
                          Test (RISE)
  GrapheR                 A Multi-Platform GUI for Drawing Customizable
                          Graphs in R
  GreedyEPL               Greedy Expected Posterior Loss
  GreedyExperimentalDesign
                          Greedy Experimental Design Construction
  GreedyExperimentalDesignJARs
                          GreedyExperimentalDesign JARs
  Greg                    Regression Helper Functions
  GregoryQuadrature       Gregory Weights for Function Integration
  GreyModel               Fitting and Forecasting of Grey Model
  Greymodels              Shiny App for Grey Forecasting Model
  GridOnClusters          Multivariate Joint Grid Discretization
  GroupBN                 Inferring Group Bayesian Networks using
                          Hierarchical Feature Clustering
  GroupComparisons        Paired/Unpaired Parametric/Non-Parametric Group
                          Comparisons
  GroupSeq                Group Sequential Design Probabilities - With
                          Graphical User Interface
  GroupTest               Multiple Testing Procedure for Grouped
                          Hypotheses
  GrowthCurveME           Mixed-Effects Modeling for Growth Data
  GrpString               String Patterns and Statistical Differences
                          Between Two Groups of Strings
  GsymPoint               Estimation of the Generalized Symmetry Point,
                          an Optimal Cutpoint in Continuous Diagnostic
                          Tests
  Guerry                  Maps, Data and Methods Related to Guerry (1833)
                          "Moral Statistics of France"
  GulFM                   General Unilateral Load Estimator for Two-Layer
                          Latent Factor Models
  Gviz                    Plotting data and annotation information along
                          genomic coordinates
  GxEScanR                Run GWAS/GWEIS Scans Using Binary Dosage Files
  GxEprs                  Genotype-by-Environment Interaction in
                          Polygenic Score Models
  H2x2Factorial           Sample Size Calculation in Hierarchical 2x2
                          Factorial Trials
  HAC                     Estimation, Simulation and Visualization of
                          Hierarchical Archimedean Copulae (HAC)
  HACSim                  Iterative Extrapolation of Species' Haplotype
                          Accumulation Curves for Genetic Diversity
                          Assessment
  HAMMER                  High-Dimensional Factor-Analytic Representation
                          Modeling and Metrics
  HARplus                 Enhanced R Package for 'GEMPACK' .har and .sl4
                          Files
  HARr                    'HAR' ('GEMPACK') File Read/Write Utility
  HBSTM                   Hierarchical Bayesian Space-Time Models for
                          Gaussian Space-Time Data
  HBV.IANIGLA             Modular Hydrological Model
  HCD                     Hierarchical Community Detection by Recursive
                          Partitioning
  HCPclust                Hierarchical Conformal Prediction for Clustered
                          Data with Missing Responses
  HCR                     Causal Discovery from Discrete Data using
                          Hidden Compact Representation
  HCTDesign               Group Sequential Design for Historical Control
                          Trial with Survival Outcome
  HCUPtools               Access and Work with HCUP Resources and
                          Datasets
  HCmodelSets             Regression with a Large Number of Potential
                          Explanatory Variables
  HDANOVA                 High-Dimensional Analysis of Variance
  HDBRR                   High Dimensional Bayesian Ridge Regression
                          without MCMC
  HDCD                    High-Dimensional Changepoint Detection
  HDCurves                Hierarchical Derivative Curve Estimation
  HDF5Array               HDF5 datasets as array-like objects in R
  HDGLM                   Tests for High Dimensional Generalized Linear
                          Models
  HDInterval              Highest (Posterior) Density Intervals
  HDLSSkST                Distribution-Free Exact High Dimensional Low
                          Sample Size k-Sample Tests
  HDMAADMM                ADMM for High-Dimensional Mediation Models
  HDMFA                   High-Dimensional Matrix Factor Analysis
  HDMT                    A Multiple Testing Procedure for
                          High-Dimensional Mediation Hypotheses
  HDNRA                   High-Dimensional Location Testing with
                          Normal-Reference Approaches
  HDOMDesign              High-Dimensional Orthogonal Maximin Distance
                          Designs
  HDRFA                   High-Dimensional Robust Factor Analysis
  HDShOP                  High-Dimensional Shrinkage Optimal Portfolios
  HDSinRdata              Data for the 'Mastering Health Data Science
                          Using R' Online Textbook
  HDSpatialScan           Multivariate and Functional Spatial Scan
                          Statistics
  HDStIM                  High Dimensional Stimulation Immune Mapping
                          ('HDStIM')
  HDTSA                   High Dimensional Time Series Analysis Tools
  HDXBoxeR                Analysis of Hydrogen-Deuterium Exchange
                          Mass-Spectrometry Data
  HDclassif               High Dimensional Supervised Classification and
                          Clustering
  HDclust                 Clustering High Dimensional Data with Hidden
                          Markov Model on Variable Blocks
  HDcpDetect              Detect Change Points in Means of High
                          Dimensional Data
  HDiR                    Directional Highest Density Regions
  HDoutliers              Leland Wilkinson's Algorithm for Detecting
                          Multidimensional Outliers
  HDtweedie               The Lasso for Tweedie's Compound Poisson Model
                          Using an IRLS-BMD Algorithm
  HEDA                    'Hydropeaking Events Detection Algorithm'
  HEssRNA                 Heritability-Based Estimation of Sample Size
                          for RNA-Seq Data
  HEtools                 Homomorphic Encryption Polynomials
  HGDMr                   Hysteretic and Gatekeeping Depressions Model
  HGMND                   Heterogeneous Graphical Model for Non-Negative
                          Data
  HGNChelper              Identify and Correct Invalid HGNC Human Gene
                          Symbols and MGI Mouse Gene Symbols
  HGSL                    Heterogeneous Group Square-Root Lasso
  HGraph                  Use Graph Structure to Travel
  HH                      Statistical Analysis and Data Display:
                          Heiberger and Holland
  HHBayes                 Bayesian Household Transmission Modeling with
                          'Stan'
  HIMA                    High-Dimensional Mediation Analysis
  HIViz                   Interactive Dashboard for 'HIV' Data
                          Visualization
  HK80                    Conversion Tools for HK80 Geographical
                          Coordinate System
  HKRbook                 Apps and Data for the Book "Introduction to
                          Statistics"
  HLAtools                Toolkit for HLA Immunogenomics
  HLMdiag                 Diagnostic Tools for Hierarchical (Multilevel)
                          Linear Models
  HLSM                    Hierarchical Latent Space Network Model
  HMC                     High-Dimensional Mean Comparison with
                          Projection and Cross-Fitting
  HMDA                    Holistic Multimodel Domain Analysis for
                          Exploratory Machine Learning
  HMDHFDplus              Read Human Mortality Database and Human
                          Fertility Database Data from the Web
  HMM                     Hidden Markov Models
  HMMHSMM                 Inference and Estimation of Hidden Markov
                          Models and Hidden Semi-Markov Models
  HMMRel                  Hidden Markov Models for Reliability and
                          Maintenance
  HMMcopula               Markov Regime Switching Copula Models
                          Estimation and Goodness-of-Fit
  HMMextra0s              Hidden Markov Models with Extra Zeros
  HMMpa                   Analysing Accelerometer Data Using Hidden
                          Markov Models
  HMR                     Flux Estimation with Static Chamber Data
  HMTL                    Heterogeneous Multi-Task Feature Learning
  HNPclassifier           Hierarchical Neyman-Pearson Classification for
                          Ordered Classes
  HOIFCar                 Covariate Adjustment in RCT by Higher-Order
                          Influence Functions
  HOME                    Harmonized Orphanhood Mortality Estimation
  HOasso                  Higher Order Assortativity for Complex Networks
  HPZoneAPI               'HPZone' API Interface
  HQM                     Superefficient Estimation of Future Conditional
                          Hazards Based on Marker Information
  HRTnomaly               Historical, Relational, and Tail
                          Anomaly-Detection Algorithms
  HRW                     Datasets, Functions and Scripts for
                          Semiparametric Regression Supporting Harezlak,
                          Ruppert & Wand (2018)
  HSAR                    Hierarchical Spatial Autoregressive Model
  HSAUR                   A Handbook of Statistical Analyses Using R (1st
                          Edition)
  HSAUR2                  A Handbook of Statistical Analyses Using R (2nd
                          Edition)
  HSAUR3                  A Handbook of Statistical Analyses Using R (3rd
                          Edition)
  HSEtest                 Homogeneity of Stratum Effects Test
  HSPOR                   Hidden Smooth Polynomial Regression for Rupture
                          Detection
  HTDV                    Hypothesis Testing for Dependent Variables with
                          Unbalanced Data
  HTGM                    High Throughput 'GoMiner'
  HTGM2D                  Two Dimensional High Throughput 'GoMiner'
  HTGM3D                  Three Dimensional High Throughput 'GoMiner'
  HTGM4D                  Four Dimensional High Throughput 'GoMiner'
  HTLR                    Bayesian Logistic Regression with Heavy-Tailed
                          Priors
  HTMLUtils               Facilitates Automated HTML Report Creation
  HTRX                    Haplotype Trend Regression with eXtra
                          Flexibility (HTRX)
  HTSCluster              Clustering High-Throughput Transcriptome
                          Sequencing (HTS) Data
  HTSFilter               Filter replicated high-throughput transcriptome
                          sequencing data
  HTSeed                  Fitting of Hydrotime Model for Seed Germination
                          Time Course
  HTSeedGLM               Hydro Thermal Time Analysis of Seed Germination
                          Using Generalised Linear Model
  HTT                     Hypothesis Testing Tree
  HUM                     Compute HUM Value and Visualize ROC Curves
  HVT                     Constructing Hierarchical Voronoi Tessellations
                          and Overlay Heatmaps for Data Analysis
  HWEintrinsic            Objective Bayesian Testing for the
                          Hardy-Weinberg Equilibrium Problem
  HYDROCAL                Hydraulic Roughness Calculator
  HYPEtools               Tools for Processing and Analyzing Files from
                          the Hydrological Catchment Model HYPE
  HZIP                    Likelihood-Based Inference for Joint Modeling
                          of Correlated Count and Binary Outcomes with
                          Extra Variability and Zeros
  HaDeX                   Analysis and Visualisation of
                          Hydrogen/Deuterium Exchange Mass Spectrometry
                          Data
  HaDeX2                  Analysis and Visualisation of
                          Hydrogen/Deuterium Exchange Mass Spectrometry
                          Data
  HadIBDs                 Incomplete Block Designs using Hadamard Matrix
                          (HadIBDs)
  HadamardR               Hadamard Matrix Generation
  HanStat                 Package for Easy Interpretation of Statistical
                          Methods
  HandTill2001            Multiple Class Area under ROC Curve
  Hapi                    Inference of Chromosome-Length Haplotypes Using
                          Genomic Data of Single Gamete Cells
  Haplin                  Analyzing Case-Parent Triad and/or Case-Control
                          Data with SNP Haplotypes
  HaploCatcher            A Predictive Haplotyping Package
  HaploDiploidEquilibrium
                          Calculate F Statistics Using Mixed Haploid and
                          Diploid Organism Data
  HaploSim                Functions to Simulate Haplotypes
  HaploVar                Defining Local Haplotype Variants for Use in
                          Trait Association and Trait Prediction Analyses
  HardyWeinberg           Statistical Tests and Graphics for
                          Hardy-Weinberg Equilibrium
  Harvest.Tree            Harvest the Classification Tree
  Hassani.SACF            Computing Lower Bound of Ljung-Box Test
  Hassani.Silva           A Test for Comparing the Predictive Accuracy of
                          Two Sets of Forecasts
  HausdorffGoF            One- And Two-Sample Hausdorff Goodness-of-Fit
                          Test
  HazardDiff              Conditional Treatment Effect for Competing
                          Risks
  HealthCal               Health Calculator
  HealthMarkers           Clinical and Metabolic Biomarker Calculation
                          Toolkit
  HeatmapR                Create Heatmaps Using Base Graphics
  Heatplus                Heatmaps with row and/or column covariates and
                          colored clusters
  HeckmanEM               Fit Normal, Student-t or Contaminated Normal
                          Heckman Selection Models
  HeckmanStan             Heckman Selection Models Based on Bayesian
                          Analysis
  HellCor                 The Hellinger Correlation
  HelloFrog               A Quirky ASCII-Art Frog Alternative to 'print'
  HelpersMG               Tools for Various R Functions Helpers
  HetSeq                  Identifying Modulators of Cellular Responses
                          Leveraging Intercellular Heterogeneity
  HeterFunctionalData     Test of No Main and/or Interaction Effects in
                          Functional Data
  HextractoR              Integrated Tool for Hairping Extraction of RNA
                          Sequences
  HhP                     Hierarchical Heterogeneity Analysis via
                          Penalization
  HiCDOC                  A/B compartment detection and differential
                          analysis
  HiCParser               Parser for HiC data in R
  HiCcompare              HiCcompare: Joint normalization and comparative
                          analysis of multiple Hi-C datasets
  HiClimR                 Hierarchical Climate Regionalization
  HiCocietyExample        Example HiC and Two 'HiCociety' Outputs for
                          Demonstration and Testing
  HiDimDA                 High Dimensional Discriminant Analysis
  HiGarrote               Nonnegative Garrote Method Incorporating
                          Hierarchical Relationships
  HiResTEC                Non-Targeted Fluxomics on High-Resolution
                          Mass-Spectrometry Data
  HiTC                    High Throughput Chromosome Conformation Capture
                          analysis
  HiddenMarkov            Hidden Markov Models
  HierPortfolios          Hierarchical Risk Clustering Portfolio
                          Allocation Strategies
  HighFive                The 'HighFive' 'C++' Interface to 'HDF5'
  HighestMedianRules      Implementation of Voting Rules Electing the
                          Candidate with Highest Median Grade
  HistDAWass              Histogram-Valued Data Analysis
  HistDat                 Summary Statistics for Histogram/Count Data
  HistData                Data Sets from the History of Statistics and
                          Data Visualization
  HistogramTools          Utility Functions for R Histograms
  HiveR                   2D and 3D Hive Plots for R
  Hmisc                   Harrell Miscellaneous
  Hmsc                    Hierarchical Model of Species Communities
  HoRM                    Supplemental Functions and Datasets for
                          "Handbook of Regression Methods"
  HodgesTools             Common Use Tools for Genomic Analysis
  Holomics                A User-Friendly R 'shiny' Application for
                          Multi-Omics Data Integration and Analysis
  Homeric                 Doughnut Plots
  HomomorphicEncryption   BFV, BGV, CKKS Schema for Fully Homomorphic
                          Encryption
  HonestDiD               Robust Inference in Difference-in-Differences
                          and Event Study Designs
  Horsekicks              Provide Extensions to the Prussian Army Death
                          by Horsekick Data
  HospitalNetwork         Building Networks of Hospitals Through Patients
                          Transfers
  Hotelling               Hotelling's T^2 Test and Variants
  HotellingEllipse        Hotelling’s T-Squared Statistic and Ellipse
  HuraultMisc             Guillem Hurault Functions' Library
  HurreconR               Models Hurricane Wind Speed, Wind Direction,
                          and Wind Damage
  HyMETT                  Hydrologic Model Evaluation and Time-Series
                          Tools
  HyRiM                   Multicriteria Risk Management using Zero-Sum
                          Games with Vector-Valued Payoffs that are
                          Probability Distributions
  HybridDesign            Hybrid Design for Phase I Dose-Finding Studies
  HybridMicrobiomes       Analysis of Host-Associated Microbiomes from
                          Hybrid Organisms
  HydroCode               Hydrological Codes
  HydroMe                 Estimating Water Retention and Infiltration
                          Model Parameters using Experimental Data
  HydroPortailStats       'HydroPortail' Statistical Functions
  HyperG                  Hypergraphs in R
  HyperbolicDist          The Hyperbolic Distribution
  IADT                    Interaction Difference Test for Prediction
                          Models
  IALS                    Iterative Alternating Least Square Estimation
                          for Large-Dimensional Matrix Factor Model
  IAPWS95                 Thermophysical Properties of Water and Steam
  IASD                    Model Selection for Index of Asymmetry
                          Distribution
  IATScore                Scoring Algorithm for the Implicit Association
                          Test (IAT)
  IATanalytics            Compute Effect Sizes and Reliability for
                          Implicit Association Test (IAT) Data
  IATscores               Implicit Association Test Scores Using Robust
                          Statistics
  IAcsSPCR                Data and Functions for "An Intro. to Accept.
                          Samp. & SPC/R"
  IBCF.MTME               Item Based Collaborative Filtering for
                          Multi-Trait and Multi-Environment Data
  IBDInfer                Design-Based Causal Inference Method for
                          Incomplete Block Designs
  IBFS                    Initial Basic Feasible Solution for
                          Transportation Problem
  IBLM                    Interpretable Boosted Linear Models
  IBMPopSim               Individual Based Model Population Simulation
  IBRtools                Integrating Biomarker-Based Assessments and
                          Radarchart Creation
  IBclust                 Information Bottleneck Methods for Clustering
                          Mixed-Type Data
  IBrokers                R API to Interactive Brokers Trader Workstation
  ICAOD                   Optimal Designs for Nonlinear Models via ICA
  ICBioMark               Data-Driven Design of Targeted Gene Panels for
                          Estimating Immunotherapy Biomarkers
  ICC                     Facilitating Estimation of the Intraclass
                          Correlation Coefficient
  ICC.Sample.Size         Calculation of Sample Size and Power for ICC
  ICCDesign               Intraclass Correlation Coefficient (ICC)
                          Design, Calculation and Interactive 'shiny'
                          Toolkit
  ICCbin                  Facilitates Clustered Binary Data Generation,
                          and Estimation of Intracluster Correlation
                          Coefficient (ICC) for Binary Data
  ICD10gm                 Metadata Processing for the German Modification
                          of the ICD-10 Coding System
  ICED                    IntraClass Effect Decomposition
  ICEHmeasures            The Equiplot Graph and Complex Inequality
                          Measures
  ICEbox                  Individual Conditional Expectation Plot Toolbox
  ICGE                    Estimation of Number of Clusters and
                          Identification of Atypical Units
  ICGOR                   Fit Generalized Odds Rate Hazards Model with
                          Interval Censored Data
  ICODS                   Data Analysis for ODS and Case-Cohort Designs
                          with Interval-Censoring
  ICS                     Tools for Exploring Multivariate Data via
                          ICS/ICA
  ICSClust                Tandem Clustering with Invariant Coordinate
                          Selection
  ICSKAT                  Interval-Censored Sequence Kernel Association
                          Test
  ICSNP                   Tools for Multivariate Nonparametrics
  ICSOutlier              Outlier Detection Using Invariant Coordinate
                          Selection
  ICSS                    ICSS Algorithm by Inclan/Tiao (1994)
  ICSShiny                ICS via a Shiny Application
  ICSsmoothing            Data Smoothing by Interpolating Cubic Splines
  ICV                     Indirect Cross-Validation (ICV) for Kernel
                          Density Estimation
  ICcalib                 Cox Model with Interval-Censored Starting Time
                          of a Covariate
  ICcforest               An Ensemble Method for Interval-Censored
                          Survival Data
  ICglm                   Information Criteria for Generalized Linear
                          Regression
  ICompELM                Independent Component Analysis Based Extreme
                          Learning Machine
  ICsurv                  Semiparametric Regression Analysis of
                          Interval-Censored Data
  ICtest                  Estimating and Testing the Number of
                          Interesting Components in Linear Dimension
                          Reduction
  ICvectorfields          Vector Fields from Spatial Time Series of
                          Population Abundance
  IDCard                  Update Chinese ID Card Number to Eighteen
                          Digits
  IDE                     Integro-Difference Equation Spatio-Temporal
                          Models
  IDEAFilter              Agnostic, Idiomatic Data Filter Module for
                          Shiny
  IDEATools               Individual and Group Farm Sustainability
                          Assessments using the IDEA4 Method
  IDF                     Estimation and Plotting of IDF Curves
  IDLFM                   Individual Dynamic Latent Factor Model
  IDMIR                   Identification of Dysregulated MiRNAs Based on
                          MiRNA-MiRNA Interaction Network
  IDPSurvival             Imprecise Dirichlet Process for Survival
                          Analysis
  IDPmisc                 'Utilities of Institute of Data Analyses and
                          Process Design (www.zhaw.ch/idp)'
  IDSL.CSA                Composite Spectra Analysis (CSA) for
                          High-Resolution Mass Spectrometry Analyses
  IDSL.FSA                Fragmentation Spectra Analysis (FSA)
  IDSL.IPA                Intrinsic Peak Analysis (IPA) for HRMS Data
  IDSL.MXP                Parser for mzML, mzXML, and netCDF Files (Mass
                          Spectrometry Data)
  IDSL.NPA                Nominal Peak Analysis (NPA)
  IDSL.SUFA               Simplified UFA
  IDSL.UFA                United Formula Annotation (UFA) for HRMS Data
                          Processing
  IDSL.UFAx               Exhaustive Chemical Enumeration for United
                          Formula Annotation
  IDSpatialStats          Estimate Global Clustering in Infectious
                          Disease
  IDetect                 Isolate-Detect Method for Multiple Change-Point
                          Detection
  IDmeasurer              Assessment of Individual Identity in Animal
                          Signals
  IDmining                Intrinsic Dimension for Data Mining
  IETD                    Inter-Event Time Definition
  IFC                     Tools for Imaging Flow Cytometry
  IFMCDM                  Intuitionistic Fuzzy Multi-Criteria Decision
                          Making Methods
  IFTPredictor            Predictions Using Item-Focused Tree Models
  IGC.CSM                 Simulate Impact of Different Urban Policies
                          Through a General Equilibrium Model
  IGST                    Informative Gene Selection Tool
  IHSEP                   Inhomogeneous Self-Exciting Process
  IHW                     Independent Hypothesis Weighting
  IIProductionUnknown     Analyzing Data Through of Percentage of
                          Importance Indice (Production Unknown) and Its
                          Derivations
  IIS                     Datasets to Accompany Wolfe and Schneider -
                          Intuitive Introductory Statistics
  IIVpredictor            Modeling Within Individual Variability as
                          Predictor
  IJSE                    Infinitesimal Jackknife Standard Errors for
                          'brms' Models
  ILORA                   Indian Alien Flora Information Database
                          Retrieval
  ILRCM                   Convert Irregular Longitudinal Data to Regular
                          Intervals and Perform Clustering
  ILS                     Interlaboratory Study
  ILSAmerge               Merge and Download International Large-Scale
                          Assessments (ILSA) Data
  ILSAstats               Statistics for International Large-Scale
                          Assessments (ILSA)
  ILSM                    Analyze Interconnection Structure of Tripartite
                          Interaction Networks
  IMD                     Index of Multiple Deprivation Data for the UK
  IMIFA                   Infinite Mixtures of Infinite Factor Analysers
                          and Related Models
  IMIX                    Gaussian Mixture Model for Multi-Omics Data
                          Integration
  IMP                     Interactive Model Performance Evaluation
  IMPACT                  The Impact of Items
  IMTest                  Information Matrix Test for Generalized Partial
                          Credit Models
  IMak                    Item Maker
  IMmailgun               Send Emails using 'Mailgun'
  INCVCommunityDetection
                          Inductive Node-Splitting Cross-Validation for
                          Community Detection
  INFOSET                 Computing a New Informative Distribution Set of
                          Asset Returns
  INLA                    Full Bayesian Analysis of Latent Gaussian
                          Models using Integrated Nested Laplace
                          Approximations
  INLABMA                 Bayesian Model Averaging with INLA
  INLAjoint               Multivariate Joint Modeling for Longitudinal
                          and Time-to-Event Outcomes with 'INLA'
  INLAspacetime           Spatial and Spatio-Temporal Models using 'INLA'
  INLAtools               Functionalities for the 'INLA' Package
  INLAvaan                Approximate Bayesian Latent Variable Analysis
  INQC                    Quality Control of Climatological Daily Time
                          Series
  INTRIGUE                Quantify and Control Reproducibility in
                          High-Throughput Experiments
  INetTool                Integration Network
  IOBR                    Immune Oncology Biological Research
  IOLS                    Iterated Ordinary Least Squares Regression
  IPAG                    Tools for IPAG Courses
  IPCWK                   Kendall's Tau Partial Corr. for Survival Trait
                          and Biomarkers
  IPDfromKM               Map Digitized Survival Curves Back to
                          Individual Patient Data
  IPEC                    Root Mean Square Curvature Calculation
  IPEDS                   Data from the Integrated Post-Secondary
                          Education Data System
  IPEDSuploadables        Transforms Institutional Data into Text Files
                          for IPEDS Automated Import/Upload
  IPLGP                   Identification of Parental Lines via Genomic
                          Prediction
  IPMRF                   Intervention in Prediction Measure for Random
                          Forests
  IPMbook                 Functions and Data for the Book 'Integrated
                          Population Models'
  IPPP                    Inhomogeneous Poisson Point Processes
  IPV                     Item Pool Visualization
  IPWboxplot              Adapted Boxplot to Missing Observations
  IQCC                    Improved Quality Control Charts
  IRISMustangMetrics      Statistics and Metrics for Seismic Data
  IRISSeismic             Classes and Methods for Seismic Data Analysis
  IRR2FPR                 Computing False Positive Rate from Inter-Rater
                          Reliability
  IRTBEMM                 Family of Bayesian EMM Algorithm for Item
                          Response Models
  IRTM                    Theory-Driven Item Response Theory (IRT) Models
  IRTShiny                Item Response Theory via Shiny
  IRTest                  Parameter Estimation of Item Response Theory
                          with Estimation of Latent Distribution
  IRanges                 Foundation of integer range manipulation in
                          Bioconductor
  IRdisplay               'Jupyter' Display Machinery
  IRexamples              Collection of Practical Institutional Research
                          Examples and Tutorials
  IRkernel                Native R Kernel for the 'Jupyter Notebook'
  IRon                    Solving Imbalanced Regression Tasks
  ISAR                    Introduction to Sports Analytics using R (ISAR)
                          Data
  ISCA                    Compare Heterogeneous Social Groups
  ISCAM                   Companion to the Book "Investigating
                          Statistical Concepts, Applications, and
                          Methods"
  ISCO08ConveRsions       Converts ISCO-08 to Job Prestige Scores,
                          ISCO-88 and Job Name
  ISEtools                Ion Selective Electrodes Analysis Methods
  ISLR                    Data for an Introduction to Statistical
                          Learning with Applications in R
  ISLR2                   Introduction to Statistical Learning, Second
                          Edition
  ISM                     Interpretive Structural Modelling (ISM)
  ISMtools                Interpretive Structural Modelling Analysis
                          Tools
  ISO11784Tools           ISO11784 PIT Tag ID Format Converters
  ISO6976.2016            Calorific Values and Properties of Natural Gas
                          per ISO 6976:2016
  ISOcodes                Selected ISO Codes
  ISOweek                 Week of the year and weekday according to ISO
                          8601
  ISPYARDSWinProbabilityGSDesign
                          Trial Design in Respiratory Disease Based on
                          the Win Probability
  ISR                     The Iterated Score Regression-Based Estimation
  ISRaD                   Tools and Data for the International Soil
                          Radiocarbon Database
  ISS                     Isotonic Subgroup Selection
  ISwR                    Introductory Statistics with R
  ITNr                    Analysis of the International Trade Network
  IVCor                   A Robust Integrated Variance Correlation
  IVDML                   Double Machine Learning with Instrumental
                          Variables and Heterogeneity
  IVPP                    Invariance Partial Pruning Test
  IVYplot                 Produces an IVY Plot (Similar to Dot Plot)
                          with/without Frequencies
  IceSat2R                'ICESat-2' Altimeter Data using R
  Icens                   NPMLE for Censored and Truncated Data
  IgAScores               Score Taxon-Level IgA Binding in IgA-Seq
                          Experiments
  IgorR                   Read Binary Files Saved by 'Igor Pro'
                          (Including 'Neuromatic' Data)
  ImCluster               Efficiency of Cluster Sampling for Crop Surveys
  ImFoR                   Non-Linear Height Diameter Models for Forestry
  ImML                    Machine Learning Algorithms Fitting and
                          Validation for Forestry
  ImNN                    Neural Networks for Predicting Volume of Forest
                          Trees
  ImVol                   Volume Prediction of Trees Using Linear and
                          Nonlinear Allometric Equations
  Immigrate               Iterative Max-Min Entropy Margin-Maximization
                          with Interaction Terms for Feature Selection
  ImmuneSigR              Immune Cell Signature Retrieval and Single-Cell
                          Scoring
  Immutables              Fast and Functional Data Structures
  Imneuron                AI Powered Neural Network Solutions for
                          Regression Tasks
  ImpShrinkage            Improved Shrinkage Estimations for Multiple
                          Linear Regression
  ImpactEffectsize        Calculation and Visualization of the Impact
                          Effect Size Measure
  ImportExport            Import and Export Data
  ImportanceIndice        Analyzing Data Through of Percentage of
                          Importance Indice and Its Derivations
  ImputeLongiCovs         Longitudinal Imputation of Categorical
                          Variables via a Joint Transition Model
  ImputeRobust            Robust Multiple Imputation with Generalized
                          Additive Models for Location Scale and Shape
  InPosition              Inference Tests for ExPosition
  InSilicoVA              Probabilistic Verbal Autopsy Coding with
                          'InSilicoVA' Algorithm
  IncDTW                  Incremental Calculation of Dynamic Time Warping
  IncidencePrevalence     Estimate Incidence and Prevalence using the
                          OMOP Common Data Model
  IncomPair               Comparison of Means for the Incomplete Paired
                          Data
  IndGenErrors            Tests of Independence Between Innovations of
                          Generalized Error Models
  IndTestPP               Tests of Independence and Analysis of
                          Dependence Between Point Processes in Time
  IndepTest               Nonparametric Independence Tests Based on
                          Entropy Estimation
  IndexConstruction       Index Construction for Time Series Data
  IndexNumR               Index Number Calculation
  IndexNumber             Index Numbers in Social Sciences
  IndexNumberTools        Working with Index Numbers
  IndexWizard             Constructing and Analyzing Complex Selection
                          Indices
  IndiAPIs                Access Indian Data via Public APIs and Curated
                          Datasets
  Indicator               Composite 'Indicator' Construction and
                          Imputation Data
  IndonesiAPIs            Access Indonesian Data via Public APIs and
                          Curated Datasets
  InferenceSMR            Inference About the Standardized Mortality
                          Ratio when Evaluating the Effect of a Screening
                          Program on Survival
  InfiniumPurify          Estimate and Account for Tumor Purity in Cancer
                          Methylation Data Analysis
  Inflation               Core Inflation
  InflectSSP              Melt Curve Fitting and Melt Shift Analysis
  Inflongitudinal         Detecting Influential Subjects in Longitudinal
                          Data
  InfluenceBorrowing      Adaptive Influence-Based Borrowing for Hybrid
                          Control Trials
  Information             Data Exploration with Information Theory
                          (Weight-of-Evidence and Information Value)
  InformativeCensoring    Multiple Imputation for Informative Censoring
  Infusion                Inference Using Simulation
  InjurySeverityScore     Translate ICD-9 into Injury Severity Score
  Inquilab                Dissipation Kinetics Analysis, Half Life
                          Period, Rate Constant, Plots
  InsectLabelR            Create Labels for Insect in Collection
  InspectChangepoint      High-Dimensional Changepoint Estimation via
                          Sparse Projection
  InspectionPlanner       Phytosanitary Inspection Sampling Planner
  InsuSensCalc            Insulin Sensitivity Indices Calculator
  IntCal                  Radiocarbon Calibration Curves
  IntNMF                  Integrative Clustering of Multiple Genomic
                          Dataset
  IntegratedJM            Joint Modeling of the Gene-Expression and
                          Bioassay Data, Taking Care of the Effect Due to
                          a Fingerprint Feature
  InterNL                 Time Series Intervention Model Using Non-Linear
                          Function
  InterSIM                Simulation of Inter-Related Genomic Datasets
  InterVA4                Replicate and Analyse 'InterVA4'
  InterVA5                Replicate and Analyse 'InterVA5'
  InteractionPoweR        Power Analyses for Interaction Effects in
                          Cross-Sectional Regressions
  InteractionSet          Base Classes for Storing Genomic Interaction
                          Data
  InteractiveComplexHeatmap
                          Make Interactive Complex Heatmaps
  Interatrix              Compute Chi-Square Measures with Corrections
  InterfaceqPCR           GUI to Analyse qPCR Results after PMA Treatment
                          or not
  InterpolateR            A Comprehensive Toolkit for Fast and Efficient
                          Spatial Interpolation
  InterpretMSSpectrum     Interpreting High Resolution Mass Spectra
  IntervalQuestionStat    Tools to Deal with Interval-Valued Responses in
                          Questionnaires
  IntervalSurgeon         Operating on Integer-Bounded Intervals
  InvStablePrior          Inverse Stable Prior for Widely-Used
                          Exponential Models
  InvariantCausalPrediction
                          Invariant Causal Prediction
  InvasionCorrection      Invasion Correction
  IrishDirectorates       A Dynamic Bipartite Latent Space Model to
                          Analyse Irish Companies' Boards from 2003 to
                          2013
  IrregLong               Analysis of Longitudinal Data with Irregular
                          Observation Times
  Iscores                 Proper Scoring Rules for Missing Value
                          Imputation
  IsingFit                Fitting Ising Models Using the ELasso Method
  IsingSampler            Sampling Methods and Distribution Functions for
                          the Ising Model
  Isinglandr              Landscape Construction and Simulation for Ising
                          Networks
  Iso                     Functions to Perform Isotonic Regression
  IsoCor                  Analyze Isotope Ratios in a 'Shiny'-App
  IsoMemo                 Retrieve Data using the 'IsoMemo' API
  IsoSpecR                The IsoSpec Algorithm
  IsoplotR                Statistical Toolbox for Radiometric
                          Geochronology
  IsoplotRgui             Web Interface to 'IsoplotR'
  IsoriX                  Isoscape Computation and Inference of Spatial
                          Origins using Mixed Models
  IssueTrackeR            List Things to Do
  ItemRest                Automated Item Removal Strategies for
                          Exploratory Factor Analysis
  IterativeHardThresholding
                          Iterative Hard Thresholding Extensions to
                          Cyclops
  IxPopDyMod              Framework for Tick Population and Infection
                          Modeling
  JADE                    Blind Source Separation Methods Based on Joint
                          Diagonalization and Some BSS Performance
                          Criteria
  JANE                    Just Another Latent Space Network Clustering
                          Algorithm
  JATSdecoder             A Metadata and Text Extraction and Manipulation
                          Tool Set
  JBrowseR                An R Interface to the JBrowse 2 Genome Browser
  JCRImpactFactor         Journal Citation Reports ('JCR') Impact Factor
                          by 'Clarivate' 'Analytics'
  JDCruncheR              'JDemetra+' Quality Report Generator
  JFE                     Tools for Analyzing Time Series Data of Just
                          Finance and Econometrics
  JFM                     Rock Mass Structural Analysis from 3D Mesh of
                          Point Cloud
  JGR                     Java GUI for R
  JICO                    Joint and Individual Regression
  JLPM                    Joint Latent Process Models
  JM                      Joint Modeling of Longitudinal and Survival
                          Data
  JM4QTN                  Joint Mapping for Quantitative Trait Loci
  JMH                     Joint Model of Heterogeneous Repeated Measures
                          and Survival Data
  JMI                     Jackknife Mutual Information
  JMbayes                 Joint Modeling of Longitudinal and
                          Time-to-Event Data under a Bayesian Approach
  JMbayes2                Extended Joint Models for Longitudinal and
                          Time-to-Event Data
  JMbdirect               Joint Model for Longitudinal and Multiple Time
                          to Events Data
  JMdesign                Joint Modeling of Longitudinal and Survival
                          Data - Power Calculation
  JNplots                 Visualize Outputs from the 'Johnson-Neyman'
                          Technique
  JOPS                    Practical Smoothing with P-Splines
  JPEN                    Covariance and Inverse Covariance Matrix
                          Estimation Using Joint Penalty
  JPSurv                  Joinpoint Model for Relative and Cause-Specific
                          Survival
  JSDNE                   Estimating the Age using Auricular Surface by
                          DNE
  JSM                     Semiparametric Joint Modeling of Survival and
                          Longitudinal Data
  JSUparameters           Estimate Parameters of the Best-Fitting
                          JohnsonSU Distribution
  JSconsole               A 'RStudio' Addin to Send 'JavaScript' Code to
                          the 'V8' Console
  JSmediation             Mediation Analysis Using Joint Significance
  JSparO                  Joint Sparse Optimization via Proximal Gradient
                          Method for Cell Fate Conversion
  JUMP                    Replicability Analysis of High-Throughput
                          Experiments
  JWileymisc              Miscellaneous Utilities and Functions
  JacobiEigen             Classical Jacobi Eigenvalue Algorithm
  Jacquard                Estimation of Jacquard's Genetic Identity
                          Coefficients
  JamendoR                Access to 'Jamendo' API
  JapanAPIs               Access Japanese Data via Public APIs and
                          Curated Datasets
  JavaGD                  Java Graphics Device
  Jaya                    Gradient-Free Optimization Algorithm for Single
                          and Multi-Objective Problems
  Jcvrisk                 Risk Calculator for Cardiovascular Disease in
                          Japan
  Jdmbs                   Monte Carlo Option Pricing Algorithms for Jump
                          Diffusion Models with Correlational Companies
  Jmisc                   Julian Miscellaneous Function
  JoF                     Modelling and Simulating Judgments of Frequency
  JoSAE                   Unit-Level and Area-Level Small Area Estimation
  JointAI                 Joint Analysis and Imputation of Incomplete
                          Data
  JointFPM                A Parametric Model for Estimating the Mean
                          Number of Events
  Julia                   Fractal Image Data Generator
  JuliaCall               Seamless Integration Between R and 'Julia'
  JuliaConnectoR          A Functionally Oriented Interface for
                          Integrating 'Julia' with R
  JuliaFormulae           Translate R Regression Model Formulae to
                          'Julia' Syntax
  JumpDiffSim             Jump Diffusion Simulation and Calibration for
                          Merton and Kou Models
  JustifyAlpha            Justifying Alpha Levels for Hypothesis Tests
  K4PrestasiSiswa         Student Achievement Data Files for TIMSS 2023
                          Grade 4
  K4ProsesSiswa           Student Process Data Files for TIMSS 2023 Grade
                          4
  K4Sekolah               School Context Data Files for TIMSS 2023 Grade
                          4
  KCSKNNShiny             K-Nearest Neighbour Classifier
  KCSNBShiny              Naive Bayes Classifier
  KDEmcmc                 Kernel Density Estimation with a Markov Chain
                          Monte Carlo Sample
  KEGGREST                Client-side REST access to the Kyoto
                          Encyclopedia of Genes and Genomes (KEGG)
  KEGGgraph               KEGGgraph: A graph approach to KEGG PATHWAY in
                          R and Bioconductor
  KEPTED                  Kernel-Embedding-of-Probability Test for
                          Elliptical Distribution
  KFAS                    Kalman Filter and Smoother for Exponential
                          Family State Space Models
  KFPCA                   Kendall Functional Principal Component Analysis
  KFPLS                   Kernel Functional Partial Least Squares
  KGode                   Kernel Based Gradient Matching for Parameter
                          Inference in Ordinary Differential Equations
  KHQ                     Methods for Calculating 'KHQ' Scores and
                          'KHQ5D' Utility Index Scores
  KINSIMU                 Panel Evaluation in Forensic Kinship Analysis
  KLINK                   Kinship Analysis with Linked Markers
  KLexp                   Kernel_lasso Expansion
  KMD                     Kernel Measure of Multi-Sample Dissimilarity
  KMEANS.KNN              KMeans and KNN Clustering Package
  KMLtoSHAPE              Preserving Attribute Values: Converting KML to
                          Shapefile
  KMsurv                  Datasets from Klein and Moeschberger (1997),
                          Survival Analysis
  KMunicate               KMunicate-Style Kaplan–Meier Plots
  KNNShiny                Interactive Document for Working with KNN
                          Analysis
  KODAMA                  Knowledge Discovery by Accuracy Maximization
  KOFM                    Test the Kronecker Product Structure in Tensor
                          Factor Models
  KOGMWU                  Functional Summary and Meta-Analysis of Gene
                          Expression Data
  KOLaide                 Pick and Plot Key Opinion Leaders from a
                          Network Given Constraints
  KONPsurv                KONP Tests: Powerful K-Sample Tests for
                          Right-Censored Data
  KOR.addrlink            Matching Address Data to Reference Index
  KPC                     Kernel Partial Correlation Coefficient
  KQM                     K Quantiles Medoids (KQM) Clustering
  KRIS                    Keen and Reliable Interface Subroutines for
                          Bioinformatic Analysis
  KRLS                    Kernel-Based Regularized Least Squares
  KRMM                    Kernel Ridge Mixed Model
  KRONX                   Clock of Regimes for Regime-Switching Fragility
                          Analysis
  KSA                     Retained Component Criterion for Principal
                          Component Analysis
  KSEAapp                 Kinase-Substrate Enrichment Analysis
  KSIC                    Korea Standard Industrial Classification (KSIC)
  KSPM                    Kernel Semi-Parametric Models
  KScorrect               Lilliefors-Corrected Kolmogorov-Smirnov
                          Goodness-of-Fit Tests
  KSgeneral               Computing P-Values of the One-Sample K-S Test
                          and the Two-Sample K-S and Kuiper Tests for
                          (Dis)Continuous Null Distribution
  KTensorGraphs           Co-Tucker3 Analysis of Two Sequences of
                          Matrices
  KWCChangepoint          Robust Changepoint Detection for Functional and
                          Multivariate Data
  KWELA                   Hierarchical Adaptive 'RT-QuIC' Classification
                          for Complex Matrices
  KappaGUI                An R-Shiny Application for Calculating Cohen's
                          and Fleiss' Kappa
  Karen                   Kalman Reaction Networks
  KarsTS                  An Interface for Microclimate Time Series
                          Analysis
  KbMvtSkew               Khattree-Bahuguna's Univariate and Multivariate
                          Skewness
  Kcop                    Smooth Test for Equality of Copulas and
                          Clustering Multivariate
  Kendall                 Kendall Rank Correlation and Mann-Kendall Trend
                          Test
  Keng                    Knock Errors Off Nice Guesses
  KernSmoothIRT           Nonparametric Item Response Theory
  KernelKnn               Kernel k Nearest Neighbors
  Kernelheaping           Kernel Density Estimation for Heaped and
                          Rounded Data
  Keyboard                Bayesian Designs for Early Phase Clinical
                          Trials
  Kifidi                  Summary Table and Means Plots
  KinMixLite              Inference About Relationships from DNA Mixtures
  KinformR                Relationship-Informed Pedigree and Variant
                          Scoring
  KingCountyHouses        Data on House Sales in King County WA
  Kira                    Machine Learning
  Kmedians                K-Medians
  KnapsackSampling        Generate Feasible Samples of a Knapsack Problem
  KneeArrower             Finds Cutoff Points on Knee Curves
  KnockoffHybrid          Hybrid Analysis of Population and Trio Data
                          with Knockoff Statistics for FDR Control
  KnockoffTrio            GWAS with Trio and Duo Data using Knockoff
                          Statistics for FDR Control
  KnowBR                  Discriminating Well Surveyed Spatial Units from
                          Exhaustive Biodiversity Databases
  KoboconnectR            Download Data from Kobotoolbox to R
  Kpart                   Cubic Spline Fitting with Knot Selection
  KrakenR                 Comprehensive R Interface for Accessing Kraken
                          Cryptocurrency Exchange REST API
  KraljicMatrix           A Quantified Implementation of the Kraljic
                          Matrix
  KrigInv                 Kriging-Based Inversion for Deterministic and
                          Noisy Computer Experiments
  Kurt                    Performs Kurtosis-Based Statistical Analyses
  L0Learn                 Fast Algorithms for Best Subset Selection
  L0TFinv                 A Splicing Approach to the Inverse Problem of
                          L0 Trend Filtering
  L0cpt                   Change Point Detection with L0 Penalty
  L0ggm                   Smooth L0 Penalty Approximations for Gaussian
                          Graphical Models
  L1centrality            Graph/Network Analysis Based on L1 Centrality
  L1pack                  Routines for L1 Estimation
  L2DensityGoFtest        Density Goodness-of-Fit Test
  L2E                     Robust Structured Regression via the L2
                          Criterion
  L2hdchange              L2 Inference for Change Points in
                          High-Dimensional Time Series
  LA                      Lioness Algorithm (LA)
  LABTNSCPSS              Calculation of Comorbidity and Frailty Scores
  LAD                     Derive Leaf Angle Distribution (LAD) from
                          Measured Leaf Inclination Angles
  LAGOSNE                 Interface to the Lake Multi-Scaled Geospatial
                          and Temporal Database
  LAIr                    Converting NDVI to LAI of Field, Proximal and
                          Satellite Data
  LAM                     Some Latent Variable Models
  LARisk                  Estimation of Lifetime Attributable Risk of
                          Cancer from Radiation Exposure
  LATERmodel              Linear Approach to Threshold with Ergodic Rate
                          for Reaction Times
  LAWBL                   Latent (Variable) Analysis with Bayesian
                          Learning
  LBBNN                   Latent Binary Bayesian Neural Networks Using
                          'torch'
  LBDiscover              Literature-Based Discovery Tools for Biomedical
                          Research
  LBI                     Likelihood Based Inference
  LBPG                    The Length-Biased Power Garima Distribution
  LBSPR                   Length-Based Spawning Potential Ratio
  LCAextend               Latent Class Analysis (LCA) with Familial
                          Dependence in Extended Pedigrees
  LCCR                    Latent Class Capture-Recapture Models
  LCCkNN                  Adaptive k-Nearest Neighbor Classifier Based on
                          Local Curvature Estimation
  LCFdata                 Data sets for package
                          ``LMERConvenienceFunctions''
  LCMCR                   Bayesian Non-Parametric Latent-Class
                          Capture-Recapture
  LCMSQA                  Liquid Chromatography/Mass Spectrometry (LC/MS)
                          Quality Assessment
  LCPA                    A General Framework for Latent Classify and
                          Profile Analysis
  LDAShiny                Interactive Topic Modeling and Bibliometric
                          Analysis via Shiny
  LDATS                   Latent Dirichlet Allocation Coupled with Time
                          Series Analyses
  LDATree                 Oblique Classification Trees with Uncorrelated
                          Linear Discriminant Analysis Splits
  LDAandLDAS              Linkage Disequilibrium of Ancestry (LDA) and
                          LDA Score (LDAS)
  LDAcoop                 Analysis of Data from Limiting Dilution Assay
                          (LDA) with or without Cellular Cooperation
  LDAvis                  Interactive Visualization of Topic Models
  LDM                     Testing Hypotheses About the Microbiome using
                          the Linear Decomposition Model
  LDNN                    Longitudinal Data Neural Network
  LDRTools                Tools for Linear Dimension Reduction
  LDcorSV                 Linkage Disequilibrium Corrected by the
                          Structure and the Relatedness
  LDlinkR                 Calculating Linkage Disequilibrium (LD) in
                          Human Population Groups of Interest
  LEA                     LEA: an R package for Landscape and Ecological
                          Association Studies
  LEAVcore                Constitution of Core Collections using Length
                          of Encoded Attribute Values
  LEGIT                   Latent Environmental & Genetic InTeraction
                          (LEGIT) Model
  LEdecomp                Decompose Life Expectancy by Age (and Cause)
  LFApp                   Shiny Apps for Lateral Flow Assays
  LFDR.MLE                Estimation of the Local False Discovery Rates
                          by Type II Maximum Likelihood Estimation
  LFDR.MME                Estimating Local False Discovery Rates Using
                          the Method of Moments
  LFDREmpiricalBayes      Estimating Local False Discovery Rates Using
                          Empirical Bayes Methods
  LFM                     Laplace Factor Model Analysis and Evaluation
  LGCU                    Implementation of Learning Gamma CUSUM
                          (Cumulative Sum) Control Charts
  LGDtoolkit              Collection of Tools for LGD Rating Model
                          Development
  LGEWIS                  Tests for Genetic Association/Gene-Environment
                          Interaction in Longitudinal Studies
  LGRF                    Set-Based Tests for Genetic Association in
                          Longitudinal Studies
  LHD                     Latin Hypercube Designs (LHDs)
  LIC                     The LIC Criterion for Optimal Subset Selection
  LINselect               Selection of Linear Estimators
  LISTO                   Performing Comprehensive Overlap Assessments
  LJexm                   Extract, Convert, and Merge 'pdf' Files from
                          'zip' Files
  LJmp3converter          Convert Video Files to 'mp3' Format, Merge or
                          Trim Audio Files using 'FFmpeg'
  LKT                     Logistic Knowledge Tracing
  LLM                     Logit Leaf Model Classifier for Binary
                          Classification
  LLMAgentR               Language Model Agents in R for AI Workflows and
                          Research
  LLMR                    Interface for Large Language Model APIs in R
  LLMTranslate            'shiny' App for TRAPD/ISPOR Survey Translation
                          with LLMs
  LLMing                  Large Language Model (LLM) Tools for
                          Psychological Text Analysis
  LLSR                    Data Analysis of Liquid-Liquid Systems using R
  LMD                     A Self-Adaptive Approach for Demodulating
                          Multi-Component Signal
  LMERConvenienceFunctions
                          Model Selection and Post-Hoc Analysis for
                          (G)LMER Models
  LMMsolver               Linear Mixed Models with Sparse Matrix Methods
                          and Smoothing
  LMMstar                 Repeated Measurement Models for Discrete Times
  LMN                     Inference for Linear Models with Nuisance
                          Parameters
  LMPdata                 Easy Import of the EU Labour Market Policy Data
  LMest                   Generalized Latent Markov Models
  LMfilteR                Filter Methods for Parameter Estimation in
                          Linear and Non Linear Regression Models
  LMoFit                  Advanced L-Moment Fitting of Distributions
  LNIRT                   LogNormal Response Time Item Response Theory
                          Models
  LNPar                   Estimation and Testing for a Lognormal-Pareto
                          Mixture
  LOCOM2                  A Logistic Regression Model for Testing
                          Microbial Differential Abundance
  LOCUS                   Low-Rank Decomposition of Brain Connectivity
                          Matrices with Uniform Sparsity
  LOGAN                   Log File Analysis in International Large-Scale
                          Assessments
  LOMAR                   Localization Microscopy Data Analysis
  LOPART                  Labeled Optimal Partitioning
  LOST                    Missing Morphometric Data Simulation and
                          Estimation
  LPBkg                   Detecting New Signals under Background
                          Mismodelling
  LPCM                    Local Principal Curve Methods
  LPDynR                  Land Productivity Dynamics Indicator
  LPM                     Linear Parametric Models Applied to
                          Hydrological Series
  LPStimeSeries           Learned Pattern Similarity and Representation
                          for Time Series
  LPmerge                 Merging Linkage Maps by Linear Programming
  LREP                    Estimate and Test Exponential vs. Pareto
                          Distributions
  LRMF3                   Low Rank Matrix Factorization S3 Objects
  LRMiss                  Linear Regression with Missing Data
  LRQVB                   Low Rank Correction Quantile Variational
                          Bayesian Algorithm for Multi-Source
                          Heterogeneous Models
  LRTesteR                Likelihood Ratio Tests and Confidence Intervals
  LS2W                    Locally Stationary Two-Dimensional Wavelet
                          Process Estimation Scheme
  LS2Wstat                A Multiscale Test of Spatial Stationarity for
                          LS2W Processes
  LSAMBA                  Lasso-SAMBA Algorithm
  LSAfun                  Applied Latent Semantic Analysis (LSA)
                          Functions
  LSAmitR                 Daten, Beispiele und Funktionen zu 'Large-Scale
                          Assessment mit R'
  LSD                     Lots of Superior Depictions
  LSDinterface            Interface Tools for 'LSD' Simulation Results
                          Files
  LSDirf                  Impulse-Response Function Analysis for
                          Agent-Based Models
  LSDsensitivity          Sensitivity Analysis Tools for 'LSD'
                          Simulations
  LSE                     Constrained Least Squares and Generalized QR
                          Factorization
  LSEbootLS               Bootstrap Methods for Regression Models with
                          Locally Stationary Errors
  LSMjml                  Fitting Latent Space Item Response Models using
                          Joint Maximum Likelihood Estimation
  LSMonteCarlo            American options pricing with Least Squares
                          Monte Carlo method
  LSPFP                   Lysate and Secretome Peptide Feature Plotter
  LSRS                    Land Surface Remote Sensing
  LST                     Land Surface Temperature Retrieval for Landsat
                          8
  LSTMfactors             Determining the Number of Factors in
                          Exploratory Factor Analysis by LSTM
  LSTS                    Locally Stationary Time Series
  LSTbook                 Data and Software for "Lessons in Statistical
                          Thinking"
  LSVAR                   Estimation of Low Rank Plus Sparse Structured
                          Vector Auto-Regressive (VAR) Model
  LSWPlib                 Simulation and Spectral Estimation of Locally
                          Stationary Wavelet Packet Processes
  LSX                     Semi-Supervised Algorithm for Document Scaling
  LTASR                   Functions to Replicate the Center for Disease
                          Control and Prevention's 'LTAS' Software in R
  LTCDM                   Latent Transition Cognitive Diagnosis Model
                          with Covariates
  LTFGRS                  Implementation of Several Phenotype-Based
                          Family Genetic Risk Scores
  LTFHPlus                Implementation of LT-FH++
  LTPDvar                 LTPD and AOQL Plans for Acceptance Sampling
                          Inspection by Variables
  LTRCtrees               Survival Trees to Fit Left-Truncated and
                          Right-Censored and Interval-Censored Survival
                          Data
  LUCIDus                 LUCID with Multiple Omics Data
  LVGP                    Latent Variable Gaussian Process Modeling with
                          Qualitative and Quantitative Input Variables
  LWFBrook90R             Simulate Evapotranspiration and Soil Moisture
                          with the SVAT Model LWF-Brook90
  LZeroSpikeInference     Exact Spike Train Inference via L0 Optimization
  LaF                     Fast Access to Large ASCII Files
  LaMa                    Fast Numerical Maximum Likelihood Estimation
                          for Latent Markov Models
  LabApplStat             Miscellaneous Scripts from the Data Science
                          Laboratory (UCPH)
  LabRS                   Laboratorio di Ricerca Sociale con R
  LabourMarketAreas       Identification, Tuning, Visualisation and
                          Analysis of Labour Market Areas
  LactCurveModels         Lactation Curve Model Fitting for Dairy Animals
  LadderFuelsR            Automated Tool for Vertical Fuel Continuity
                          Analysis using Airborne Laser Scanning Data
  LagSequential           Lag-Sequential Categorical Data Analysis
  Lahman                  Sean 'Lahman' Baseball Database
  LakeMetabolizer         Tools for the Analysis of Ecosystem Metabolism
  LambertW                Probabilistic Models to Analyze and Gaussianize
                          Heavy-Tailed, Skewed Data
  LandComp                Analysing Landscape Composition and Structure
                          at Multiple Scales
  Landmarking             Analysis using Landmark Models
  Langevin                Langevin Analysis in One and Two Dimensions
  LangevinFlow            Langevin Diffusion Samplers with a C++ Backend
  LaplacesDemon           Complete Environment for Bayesian Inference
  Largevars               Testing Large VARs for the Presence of
                          Cointegration
  LassoBacktracking       Modelling Interactions in High-Dimensional Data
                          with Backtracking
  LassoHiDFastGibbs       Fast High-Dimensional Gibbs Samplers for
                          Bayesian Lasso Regression
  LassoNet                3CoSE Algorithm
  LassoSIR                Sparsed Sliced Inverse Regression via Lasso
  Latamverse              Latin American Data via 'RESTful' APIs and
                          Curated Datasets
  LatentBMA               Bayesian Model Averaging for Univariate Link
                          Latent Gaussian Models
  Laterality              Functions to Calculate Common Laterality
                          Statistics in Primatology
  LatticeDesign           Lattice-Based Space-Filling Designs
  LatticeKrig             Multi-Resolution Kriging Based on Markov Random
                          Fields
  LeArEst                 Border and Area Estimation of Data Measured
                          with Additive Error
  LeMaRns                 Length-Based Multispecies Analysis by Numerical
                          Simulation
  LePage                  LePage Type Tests
  LeadSense               Medtronic Brain Sense Local Field Potencial
                          Analysis
  LeafArea                Rapid Digital Image Analysis of Leaf Area
  LearnBayes              Functions for Learning Bayesian Inference
  LearnClust              Learning Hierarchical Clustering Algorithms
  LearnGeom               Learning Plane Geometry
  LearnNonparam           'R6'-Based Flexible Framework for Permutation
                          Tests
  LearnPCA                Functions, Data Sets and Vignettes to Aid in
                          Learning Principal Components Analysis (PCA)
  LearnSL                 Learn Supervised Classification Methods Through
                          Examples and Code
  LearnVizLMM             Learning and Communicating Linear Mixed Models
                          Without Data
  LearningRlab            Statistical Learning Functions
  LearningStats           Elemental Descriptive and Inferential
                          Statistics
  LeaveOutKSS             Leave-Out Variance Component Estimation for
                          Two-Way Fixed Effects Models
  LexFindR                Find Related Items and Lexical Dimensions in a
                          Lexicon
  LexisNexisTools         Working with Files from 'LexisNexis'
  LexisPlotR              Plot Lexis Diagrams for Demographic Purposes
  LiblineaR               Linear Predictive Models Based on the LIBLINEAR
                          C/C++ Library
  Libra                   Linearized Bregman Algorithms for Generalized
                          Linear Models
  LifeHist                Life History Models of Individuals
  LifeInsuranceContracts
                          Framework for Traditional Life Insurance
                          Contracts
  LifeInsureR             Modelling Traditional Life Insurance Contracts
  LifeTableBuilder        Interactive 'shiny' Application for
                          Constructing Life Tables
  LifeTableFertility      'shiny' Application for Life Table and
                          Fertility Analysis
  LifemapR                Data Visualisation on 'Lifemap' Tree
  Lifertable              Life and Fertility Tables Specially for Insects
  LiftTest                A Bootstrap Proportion Test for Brand Lift
                          Testing
  LightFitR               Design Complex Light Regimes
  LightLogR               Process Data from Wearable Light Loggers and
                          Optical Radiation Dosimeters
  LikertEZ                Easy Analysis and Visualization of Likert Scale
                          Data
  LikertMakeR             Synthesise and Correlate Likert Scale and
                          Rating-Scale Data Based on Summary Statistics
  LilRhino                For Implementation of Feed Reduction, Learning
                          Examples, NLP and Code Management
  LimnoPalettes           A Limnology Themed Palette Generator
  LinCal                  Static Univariate Frequentist and Bayesian
                          Linear Calibration
  LinRegInteractive       Interactive Interpretation of Linear Regression
                          Models
  LindenmayeR             Functions to Explore L-Systems (Lindenmayer
                          Systems)
  LindleyPowerSeries      Lindley Power Series Distribution
  LinearRegressionMDE     Minimum Distance Estimation in Linear
                          Regression Model
  Linkage                 Clustering Communication Networks Using the
                          Stochastic Topic Block Model Through Linkage.fr
  LinkedGASP              Linked Emulator of a Coupled System of
                          Simulators
  LinkedMatrix            Column-Linked and Row-Linked Matrices
  Linnorm                 Linear model and normality based normalization
                          and transformation method (Linnorm)
  LipidMS                 Lipid Annotation for LC-MS/MS DDA or DIA Data
  LipidomicsR             Elegant Tools for Processing and Visualization
                          of Lipidomics Data
  LipinskiFilters         Computes and Visualize Lipinski's Parameters
  LitFetchR               Automatically Fetching References Metadata from
                          Literature Databases
  Lmoments                L-Moments and Quantile Mixtures
  LncFinder               LncRNA Identification and Analysis Using
                          Heterologous Features
  LoBrA                   Generalized Spline Mixed Effect Models for
                          Longitudinal Breath Data
  LoTTA                   Bayesian Inference in Regression Discontinuity
                          Designs
  LocKer                  Locally Sparse Estimator of Generalized Varying
                          Coefficient Model for Asynchronous Longitudinal
                          Data
  LocaTT                  Geographically-Conscious Taxonomic Assignment
                          for Metabarcoding
  LocalControl            Nonparametric Methods for Generating High
                          Quality Comparative Effectiveness Evidence
  LocalCop                Local Likelihood Inference for Conditional
                          Copula Models
  Lock5Data               Datasets for "Statistics: UnLocking the Power
                          of Data"
  LogConcDEAD             Log-Concave Density Estimation in Arbitrary
                          Dimensions
  LogRegEquiv             Logistic Regression Equivalence
  LogicForest             Logic Forest
  LogicReg                Logic Regression
  LogisticCopula          A Copula Based Extension of Logistic Regression
  LogisticCurveFitting    Logistic Curve Fitting by Rhodes Method
  LogisticEnsembles       Automatically Runs 18 Logistic Models-14
                          Individual Logistic Models and 4 Ensembles of
                          Models
  LogisticRCI             Linear and Logistic Regression-Based Reliable
                          Change Index
  LongCART                Recursive Partitioning for Longitudinal Data
                          and Right Censored Data Using Baseline
                          Covariates
  LongDat                 A Tool for 'Covariate'-Sensitive Longitudinal
                          Analysis on 'omics' Data
  LongDecompHE            Longitudinal Decomposition of Health Expectancy
                          by Age and Cause
  LoopAnalyst             A Collection of Tools to Conduct Levins' Loop
                          Analysis
  LoopDetectR             Comprehensive Feedback Loop Detection in ODE
                          Models
  LoopRig                 Integration and Analysis of Chromatin Loop Data
  LorMe                   Lightweight One-Line Resolving Microbial
                          Ecology Program
  LorenzRegression        Lorenz and Penalized Lorenz Regressions
  LowRankQP               Low Rank Quadratic Programming
  LqG                     Robust Group Variable Screening Based on
                          Maximum Lq-Likelihood Estimation
  Luminescence            Comprehensive Luminescence Dating Data Analysis
  M2SMF                   Multi-Modal Similarity Matrix Factorization for
                          Integrative Multi-Omics Data Analysis
  M2SMJF                  Multi-Modal Similarity Matrix Joint
                          Factorization
  M3                      Reading M3 Files
  M3C                     Monte Carlo Reference-based Consensus
                          Clustering
  M3JF                    Multi-Modal Matrix Joint Factorization for
                          Integrative Multi-Omics Data Analysis
  MACER                   Molecular Acquisition, Cleaning, and Evaluation
                          in R 'MACER'
  MADMMplasso             Multi Variate Multi Response ADMM with
                          Interaction Effects
  MADtests                Hypothesis Tests and Confidence Intervals for
                          Median Absolute Deviations
  MAFLD                   Diagnosis of Metabolic Dysfunction Associated
                          Fatty Liver Disease
  MAGEE                   Mixed Model Association Test for
                          GEne-Environment Interaction
  MAGMA.R                 MAny-Group MAtching
  MAGNAMWAR               A Pipeline for Meta-Genome Wide Association
  MAICtools               Performing Matched-Adjusted Indirect
                          Comparisons (MAIC)
  MAIHDA                  Multilevel Analysis of Individual Heterogeneity
                          and Discriminatory Accuracy
  MAINT.Data              Model and Analyse Interval Data
  MAIVE                   Meta Analysis Instrumental Variable Estimator
  MAKL                    Multiple Approximate Kernel Learning (MAKL)
  MALDIquant              Quantitative Analysis of Mass Spectrometry Data
  MALDIquantForeign       Import/Export Routines for 'MALDIquant'
  MALDIrppa               MALDI Mass Spectrometry Data Robust
                          Pre-Processing and Analysis
  MAMS                    Designing Multi-Arm Multi-Stage Studies
  MANOVA.RM               Resampling-Based Analysis of Multivariate Data
                          and Repeated Measures Designs
  MAP                     Multimodal Automated Phenotyping
  MAPA                    Multiple Aggregation Prediction Algorithm
  MAPCtools               Multivariate Age-Period-Cohort (MAPC) Modeling
                          for Health Data
  MARMoT                  Matching on Poset-Based Average Rank for
                          Multiple Treatments (MARMoT)
  MARSANNhybrid           MARS Based ANN Hybrid Model
  MARSGWR                 A Hybrid Spatial Model for Capturing Spatially
                          Varying Relationships Between Variables in the
                          Data
  MARSS                   Multivariate Autoregressive State-Space
                          Modeling
  MARSSVRhybrid           MARS SVR Hybrid
  MASSExtra               Some 'MASS' Enhancements
  MASSTIMATE              Body Mass Estimation Equations for Vertebrates
  MAST                    Model-based Analysis of Single Cell
                          Transcriptomics
  MAT                     Multidimensional Adaptive Testing
  MATA                    Model-Averaged Tail Area (MATA) Confidence
                          Interval and Distribution
  MATES                   Multi-View Aggregated Two Sample Tests
  MAVE                    Methods for Dimension Reduction
  MAZE                    Mediation Analysis for Zero-Inflated Mediators
  MAd                     Meta-Analysis with Mean Differences
  MAnorm2                 Tools for Normalizing and Comparing ChIP-seq
                          Samples
  MB                      The Use of Marginal Distributions in
                          Conditional Forecasting
  MBA                     Multilevel B-Spline Approximation
  MBAnalysis              Multiblock Exploratory and Predictive Data
                          Analysis
  MBBEFDLite              Statistical Functions for the
                          Maxwell-Boltzmann-Bose-Einstein-Fermi-Dirac
                          (MBBEFD) Family of Distributions
  MBC                     Multivariate Bias Correction of Climate Model
                          Outputs
  MBCbook                 Companion Package for the Book "Model-Based
                          Clustering and Classification for Data Science"
  MBESS                   The MBESS R Package
  MBHdesign               Spatial Designs for Ecological and
                          Environmental Surveys
  MBMethPred              Medulloblastoma Subgroups Prediction
  MBNMAdose               Dose-Response MBNMA Models
  MBNMAtime               Run Time-Course Model-Based Network
                          Meta-Analysis (MBNMA) Models
  MBRM                    Mixed Regression Models with Generalized
                          Log-Gamma Random Effects
  MBSGS                   Multivariate Bayesian Sparse Group Selection
                          with Spike and Slab
  MBSP                    Multivariate Bayesian Model with Shrinkage
                          Priors
  MBmca                   Nucleic Acid Melting Curve Analysis
  MCARtest                Optimal Nonparametric Testing of Missing
                          Completely at Random
  MCAvariants             Multiple Correspondence Analysis Variants
  MCBackscattering        Monte Carlo Simulation for Surface
                          Backscattering
  MCCM                    Mixed Correlation Coefficient Matrix
  MCI                     Multiplicative Competitive Interaction (MCI)
                          Model
  MCID                    Estimating the Minimal Clinically Important
                          Difference
  MCL                     Markov Cluster Algorithm
  MCM                     Estimating and Testing Intergenerational Social
                          Mobility Effect
  MCMC.qpcr               Bayesian Analysis of qRT-PCR Data
  MCMC4Extremes           Posterior Distribution of Extreme Value Models
                          in R
  MCMCglmm                MCMC Generalised Linear Mixed Models
  MCMCpack                Markov Chain Monte Carlo (MCMC) Package
  MCMCprecision           Precision of Discrete Parameters in
                          Transdimensional MCMC
  MCMCvis                 Tools to Visualize, Manipulate, and Summarize
                          MCMC Output
  MCOE                    Creates New Folders and Loads Standard
                          Practices for Monterey County Office of
                          Education
  MCPAN                   Multiple Comparisons Using Normal Approximation
  MCPMod                  Design and Analysis of Dose-Finding Studies
  MCPModBC                Improved Inference in Multiple Comparison
                          Procedure – Modelling
  MCPModGeneral           A Supplement to the 'DoseFinding' Package for
                          the General Case
  MCPModPack              Simulation-Based Design and Analysis of
                          Dose-Finding Trials
  MCPtests                Multiples Comparisons Procedures
  MCS                     Model Confidence Set Procedure
  MCSim                   Determine the Optimal Number of Clusters
  MCSimMod                Working with 'MCSim' Models
  MCTrend                 Monte Carlo Trend Analysis
  MChtest                 Monte Carlo Hypothesis Tests with Sequential
                          Stopping
  MCseqReplic             Monte Carlo Simulations of Time Changes in
                          Sequences
  MD2sample               Various Methods for the Two Sample Problem in
                          D>1 Dimensions
  MDCcure                 Martingale Dependence Tools and Testing for
                          Mixture Cure Models
  MDDC                    Modified Detecting Deviating Cells Algorithm in
                          Pharmacovigilance
  MDFS                    MultiDimensional Feature Selection
  MDMA                    Mathijs Deen's Miscellaneous Auxiliaries
  MDMR                    Multivariate Distance Matrix Regression
  MDOLS                   Inference of Quadratic Functional for
                          Moderate-Dimensional OLS
  MDP2                    Markov Decision Processes (MDPs)
  MDPIexploreR            Web Scraping and Bibliometric Analysis of MDPI
                          Journals
  MDPtoolbox              Markov Decision Processes Toolbox
  MDSMap                  High Density Genetic Linkage Mapping using
                          Multidimensional Scaling
  MDSPCAShiny             Interactive Document for Working with
                          Multidimensional Scaling and Principal
                          Component Analysis
  MDSS                    Modeling Human Dentin Serial Sectioning
  MDgof                   Various Methods for the Goodness-of-Fit Problem
                          in D>1 Dimensions
  MDimNormn               Multi-Dimensional MA Normalization for Plate
                          Effect
  MEAanalysis             Analyse and Visualise Multi Electrode Array
                          Burst Data
  MECfda                  Scalar-on-Function Regression with Measurement
                          Error Correction
  MED                     Mediation by Tilted Balancing
  MEDesigns               Mating Environmental Designs
  MEDseq                  Mixtures of Exponential-Distance Models with
                          Covariates
  MEFM                    Perform MEFM Estimation on Matrix Time Series
  MEGB                    Gradient Boosting for Longitudinal Data
  MEMSS                   Data Sets from Mixed-Effects Models in S
  MERO                    Performing Monte Carlo Expectation Maximization
                          Random Forest Imputation for Biological Data
  MESS                    Miscellaneous Esoteric Statistical Scripts
  MEclustnet              Fit the Mixture of Experts Latent Position
                          Cluster Model to Network Data
  MEsreg                  Generalized Maximum Entropy Estimation for
                          Smooth Transition and Kink Regression Models
  MF.beta4                Measuring Ecosystem Multi-Functionality and Its
                          Decomposition
  MFAg                    Multiple Factor Analysis (MFA)
  MFDFA                   MultiFractal Detrended Fluctuation Analysis
  MFF                     Meta Fuzzy Functions
  MFO                     Maximal Fat Oxidation and Kinetics Calculation
  MFPCA                   Multivariate Functional Principal Component
                          Analysis for Data Observed on Different
                          Dimensional Domains
  MFRCD                   Optimal Row-Column Designs for Asymmetrical
                          Factorial Experiments
  MFSD                    Multivariate Functional Spatial Data
  MFSIS                   Model-Free Sure Independent Screening
                          Procedures
  MGBT                    Multiple Grubbs-Beck Low-Outlier Test
  MGDrivE                 Mosquito Gene Drive Explorer
  MGDrivE2                Mosquito Gene Drive Explorer 2
  MGL                     Module Graphical Lasso
  MGLM                    Multivariate Response Generalized Linear Models
  MGMM                    Missingness-Aware Gaussian Mixture Models
  MGPSDK                  Interact with the Maxar 'MGP' Application
                          Programming Interfaces
  MGSDA                   Multi-Group Sparse Discriminant Analysis
  MHCtools                Analysis of MHC Data in Non-Model Species
  MHD                     Metric Halfspace Depth
  MHDA                    Massive Hierarchically Data Analysis
  MHQoL                   Mental Health Quality of Life Toolkit
  MHTdiscrete             Multiple Hypotheses Testing for Discrete Data
  MHTmult                 Multiple Hypotheses Testing for Multiple
                          Families/Groups Structure
  MHTrajectoryR           Bayesian Model Selection in Logistic Regression
                          for the Detection of Adverse Drug Reactions
  MIAmaxent               A Modular, Integrated Approach to Maximum
                          Entropy Distribution Modeling
  MIC                     Analysis of Antimicrobial Minimum Inhibitory
                          Concentration Data
  MICsplines              The Computing of Monotonic Spline Bases and
                          Constrained Least-Squares Estimates
  MIDASim                 Simulating Realistic Microbiome Data using
                          'MIDASim'
  MIDN                    Nearly Exact Sample Size Calculation for Exact
                          Powerful Nonrandomized Tests for Differences
                          Between Binomial Proportions
  MIGEE                   Impute Missing Values and Fitting Linear Mixed
                          Effect Model
  MIIPW                   IPW and Mean Score Methods for Time-Course
                          Missing Data
  MIIVefa                 Exploratory Factor Analysis Using Model Implied
                          Instrumental Variables
  MIIVsem                 Model Implied Instrumental Variable (MIIV)
                          Estimation of Structural Equation Models
  MIMER                   Data Wrangling for Antimicrobial Resistance
                          Studies
  MIMSunit                Algorithm to Compute Monitor Independent
                          Movement Summary Unit (MIMS-Unit)
  MINTplates              Encode "License-Plates" from Sequences and
                          Decode Them Back
  MIRDD                   Diagnostic Tool by Multiple Imputation for
                          Regression Discontinuity Designs
  MIXFIM                  Evaluation of the FIM in NLMEMs using MCMC
  MJMbamlss               Multivariate Joint Models with 'bamlss'
  MKLE                    Maximum Kernel Likelihood Estimation
  MKMeans                 A Modern K-Means (MKMeans) Clustering Algorithm
  MKclass                 Statistical Classification
  MKdescr                 Descriptive Statistics
  MKendall                Matrix Kendall's Tau and Matrix Elliptical
                          Factor Model
  MKinfer                 Inferential Statistics
  MKmisc                  Miscellaneous Functions from M. Kohl
  MKomics                 Omics Data Analysis
  MKpower                 Power Analysis and Sample Size Calculation
  ML.MSBD                 Maximum Likelihood Inference on Multi-State
                          Trees
  ML2Pvae                 Variational Autoencoder Models for IRT
                          Parameter Estimation
  MLBC                    Bias Correction Methods for Models Using
                          Synthetic Data
  MLCIRTwithin            Latent Class Item Response Theory (LC-IRT)
                          Models under Within-Item Multidimensionality
  MLCM                    Maximum Likelihood Conjoint Measurement
  MLCOPULA                Classification Models with Copula Functions
  MLCausal                Causal Inference Methods for Multilevel and
                          Clustered Data
  MLDS                    Maximum Likelihood Difference Scaling
  MLDataR                 Collection of Machine Learning Datasets for
                          Supervised Machine Learning
  MLE                     Maximum Likelihood Estimation of Various
                          Univariate and Multivariate Distributions
  MLEce                   Asymptotic Efficient Closed-Form Estimators for
                          Multivariate Distributions
  MLEcens                 Computation of the MLE for Bivariate Interval
                          Censored Data
  MLFDR                   High Dimensional Mediation Analysis using Local
                          False Discovery Rates
  MLFS                    Machine Learning Forest Simulator
  MLGL                    Multi-Layer Group-Lasso
  MLGdata                 Datasets for Use with Salvan, Sartori and Pace
                          (2020)
  MLID                    Multilevel Index of Dissimilarity
  MLInterfaces            Uniform interfaces to R machine learning
                          procedures for data in Bioconductor containers
  MLML2R                  Maximum Likelihood Estimation of DNA
                          Methylation and Hydroxymethylation Proportions
  MLMOI                   Estimating Frequencies, Prevalence and
                          Multiplicity of Infection
  MLMusingR               Practical Multilevel Modeling
  MLPUGS                  Multi-Label Prediction Using Gibbs Sampling
                          (and Classifier Chains)
  MLSP                    Machine Learning Models for Soil Properties
  MLZ                     Mean Length-Based Estimators of Mortality using
                          TMB
  MLeval                  Machine Learning Model Evaluation
  MLmetrics               Machine Learning Evaluation Metrics
  MLmorph                 Integrating Morphological Modeling and Machine
                          Learning for Decision Support
  MLpreemption            Maximum Likelihood Estimation of the Niche
                          Preemption Model
  MLwrap                  Machine Learning Modelling for Everyone
  MM                      The Multiplicative Multinomial Distribution
  MM4LMM                  Inference of Linear Mixed Models Through MM
                          Algorithm
  MMAC                    Data for Mathematical Modeling and Applied
                          Calculus
  MMAD                    An R Package of Minorization-Maximization
                          Algorithm via the Assembly--Decomposition
                          Technology
  MMD                     Minimal Multilocus Distance (MMD) for Source
                          Attribution and Loci Selection
  MMDCopula               Robust Estimation of Copulas by Maximum Mean
                          Discrepancy
  MMDai                   Multivariate Multinomial Distribution
                          Approximation and Imputation for Incomplete
                          Categorical Data
  MMDvariance             Detecting Differentially Variable Genes Using
                          the Mixture of Marginal Distributions
  MMGFM                   Multi-Study Multi-Modality Generalized Factor
                          Model
  MMINP                   Microbe-Metabolite Interactions-Based Metabolic
                          Profiles Predictor
  MMLR                    Fitting Markov-Modulated Linear Regression
                          Models
  MMOC                    Multi-Omic Spectral Clustering using the Flag
                          Manifold
  MMRcaseselection        Case Classification and Selection Based on
                          Regression Results
  MMWRweek                Convert Dates to MMWR Day, Week, and Year
  MMeM                    Multivariate Mixed Effects Model
  MN                      Matrix Normal Distribution
  MNARclust               Clustering Data with Non-Ignorable Missingness
                          using Semi-Parametric Mixture Models
  MNB                     Diagnostic Tools for a Multivariate Negative
                          Binomial Regression Model
  MNLR                    Interactive Shiny Presentation for Working with
                          Multinomial Logistic Regression
  MNM                     Multivariate Nonparametric Methods. An Approach
                          Based on Spatial Signs and Ranks
  MNP                     Fitting the Multinomial Probit Model
  MNS                     Mixed Neighbourhood Selection
  MNormTest               Multivariate Normal Hypothesis Testing
  MOCCA                   Multi-Objective Optimization for Collecting
                          Cluster Alternatives
  MODISTools              Interface to the 'MODIS Land Products Subsets'
                          Web Services
  MOEADr                  Component-Wise MOEA/D Implementation
  MOFA2                   Multi-Omics Factor Analysis v2
  MOFAT                   Maximum One-Factor-at-a-Time Designs
  MOLHD                   Multiple Objective Latin Hypercube Design
  MOM                     Estimation and Testing of Hypothesis
  MOODE                   Multi-Objective Optimal Design of Experiments
  MOQA                    Basic Quality Data Assurance for
                          Epidemiological Research
  MOSAlloc                Constraint Multiobjective Sample Allocation
  MOST                    Multiphase Optimization Strategy
  MOTE                    Effect Size and Confidence Interval Calculator
  MOsemiind               Marshall-Olkin Shock Models with
                          Semi-Independent Time
  MOutliers               Multivariate Outlier Detection Methods
  MPBoost                 Treatment Allocation in Clinical Trials by the
                          Maximal Procedure
  MPCI                    Multivariate Process Capability Indices (MPCI)
  MPCR                    Multi Precision Computing
  MPDiR                   Data Sets and Scripts for Modeling
                          Psychophysical Data in R
  MPGE                    A Two-Step Approach to Testing Overall Effect
                          of Gene-Environment Interaction for Multiple
                          Phenotypes
  MPI                     Computation of Multidimensional Poverty Index
                          (MPI)
  MPN                     Most Probable Number and Other Microbial
                          Enumeration Techniques
  MPS                     Estimating Through the Maximum Product Spacing
                          Approach
  MPSEM                   Modelling Phylogenetic Signals using
                          Eigenvector Maps
  MPTinR                  Analyze Multinomial Processing Tree Models
  MPV                     Data Sets from Montgomery, Peck and Vining
  MPsychoR                Modern Psychometrics with R
  MQMF                    Modelling and Quantitative Methods in Fisheries
  MR.RGM                  Fitting Multivariate Bidirectional Mendelian
                          Randomization Networks Using Bayesian Directed
                          Cyclic Graphical Models
  MRAM                    Multivariate Regression Association Measure
  MRCE                    Multivariate Regression with Covariance
                          Estimation
  MRCV                    Methods for Analyzing Multiple Response
                          Categorical Variables (MRCVs)
  MRFA                    Fitting and Predicting Large-Scale Nonlinear
                          Regression Problems using Multi-Resolution
                          Functional ANOVA (MRFA) Approach
  MRFcov                  Markov Random Fields with Additional Covariates
  MRG                     Create Non-Confidential Multi-Resolution Grids
  MRHawkes                Multivariate Renewal Hawkes Process
  MRIreduce               ROI-Based Transformation of Neuroimages into
                          High-Dimensional Data Frames
  MRMCaov                 Multi-Reader Multi-Case Analysis of Variance
  MRMCbinary              Multi-Reader Multi-Case Analysis of Binary
                          Diagnostic Tests
  MRMCsamplesize          Sample Size Estimations for Planning
                          Multi-Reader Multi-Case (MRMC) Studies Without
                          Pilot Data
  MRPC                    PC Algorithm with the Principle of Mendelian
                          Randomization
  MRQoL                   Minimal Clinically Important Difference and
                          Response Shift Effect for Health-Related
                          Quality of Life
  MRReg                   MDL Multiresolution Linear Regression Framework
  MRStdCRT                Model-Robust Standardization in
                          Cluster-Randomized Trials
  MRStdLCRT               Model-Robust Standardization for Longitudinal
                          Cluster-Randomized Trials
  MRTAnalysis             Assessing Proximal, Distal, and Mediated Causal
                          Excursion Effects for Micro-Randomized Trials
  MRTSampleSize           A Sample Size Calculator for Micro-Randomized
                          Trials
  MRTSampleSizeBinary     Sample Size Calculator for MRT with Binary
                          Outcomes
  MRZero                  Diet Mendelian Randomization
  MRgrowth                Mark-Recapture Growth Models
  MRmediation             A Causal Mediation Method with Methylated
                          Region (MR) as the Mediator
  MSBStatsData            Data Sets for Courses at the Münster School of
                          Business
  MSCCT                   Multiple Survival Crossing Curves Tests
  MSCMT                   Multivariate Synthetic Control Method Using
                          Time Series
  MSCquartets             Analyzing Gene Tree Quartets under the
                          Multi-Species Coalescent
  MSCsimtester            Tests of Multispecies Coalescent Gene Tree
                          Simulator Output
  MSEtool                 Management Strategy Evaluation Toolkit
  MSG                     Data and Functions for the Book Modern
                          Statistical Graphics
  MSGARCH                 Markov-Switching GARCH Models
  MSGARCHelm              Hybridization of MS-GARCH and ELM Model
  MSIMST                  Bayesian Monotonic Single-Index Regression
                          Model with the Skew-T Likelihood
  MSMGOptimizer           Mine Sustainability Modeling Group (MSMG)
                          'SimaPro' CSV Optimizer
  MSML                    Model Selection Based on Machine Learning (ML)
  MSMU                    Descriptive Statistics Functions for Numeric
                          Data
  MSMwRA                  Multivariate Statistical Methods with R
                          Applications
  MSN                     Multivariate Survival Data with Network
                          Structures
  MSPRT                   A Modified Sequential Probability Ratio Test
                          (MSPRT)
  MSSQL                   Tools to Work with Microsoft SQL Server
                          Databases via 'RODBC'
  MST                     Multivariate Survival Trees
  MSTest                  Hypothesis Testing for Markov Switching Models
  MSUthemes               Michigan State University (MSU) Palettes and
                          Themes
  MSbox                   Mass Spectrometry Tools
  MSclassifR              Automated Classification of Mass Spectra
  MSclust                 Multiple-Scaled Clustering
  MScombine               Combine Data from Positive and Negative
                          Ionization Mode Finding Common Entities
  MSigSeg                 Multiple SIGnal SEGmentation
  MSinference             Multiscale Inference for Nonparametric Time
                          Trend(s)
  MSnbase                 Base Functions and Classes for Mass
                          Spectrometry and Proteomics
  MSoutcomes              CORe Multiple Sclerosis Outcomes Toolkit
  MSwM                    Fitting Markov Switching Models
  MTA                     Multiscalar Territorial Analysis
  MTAR                    Multi-Trait Analysis of Rare-Variant
                          Association Study
  MTE                     Maximum Tangent Likelihood Estimation for
                          Robust Linear Regression and Variable Selection
  MTLR                    Survival Prediction with Multi-Task Logistic
                          Regression
  MTPS                    Multi-Task Prediction using Stacking Algorithms
  MTS                     All-Purpose Toolkit for Analyzing Multivariate
                          Time Series (MTS) and Estimating Multivariate
                          Volatility Models
  MTSYS                   Methods in Mahalanobis-Taguchi (MT) System
  MTest                   A Procedure for Multicollinearity Testing using
                          Bootstrap
  MUACz                   Generate MUAC and BMI z-Scores and Percentiles
                          for Children and Adolescents
  MUGS                    Multisource Graph Synthesis with EHR Data
  MUS                     Monetary Unit Sampling and Estimation Methods,
                          Widely Used in Auditing
  MUVR2                   Multivariate Methods with Unbiased Variable
                          Selection
  MVA                     An Introduction to Applied Multivariate
                          Analysis with R
  MVET                    Multivariate Estimates and Tests
  MVN                     Multivariate Normality Tests
  MVNBayesian             Bayesian Analysis Framework for MVN (Mixture)
                          Distribution
  MVNGmod                 Matrix-Variate Non-Gaussian Linear Regression
                          Models
  MVOPR                   Multi-View Orthogonal Projection Regression for
                          Multi-Modality Integration
  MVPBT                   Publication Bias Tests for Meta-Analysis of
                          Diagnostic Accuracy Test
  MVQuickGraphs           Quick Multivariate Graphs
  MVR                     Mean-Variance Regularization
  MVSKmod                 Matrix-Variate Skew Linear Regression Models
  MVT                     Estimation and Testing for the Multivariate
                          t-Distribution
  MVTests                 Multivariate Hypothesis Tests
  MVar                    Multivariate Analysis
  MVar.pt                 Analise multivariada (brazilian portuguese)
  MVisAGe                 Compute and Visualize Bivariate Associations
  MWright                 Mainardi-Wright Family of Distributions
  MaOEA                   Many Objective Evolutionary Algorithm
  MacBehaviour            Behavioural Studies of Large Language Models
  MachineShop             Machine Learning Models and Tools
  MacroFilters            Robust Trend-Cycle Decomposition for
                          Macroeconomic Time Series
  MacroZooBenthosWaterA   Fresh Water Quality Analysis Based on
                          Macrozoobenthos
  MaddisonData            Maddison Project Data
  Maeswrap                Wrapper Functions for MAESTRA/MAESPA
  MagmaClustR             Clustering and Prediction using Multi-Task
                          Gaussian Processes with Common Mean
  MainExistingDatasets    Main Existing Human Datasets
  MajKMeans               k-Means Algorithm with a
                          Majorization-Minimization Method
  MajMinKmeans            k-Means Algorithm with a
                          Majorization-Minimization Method
  MakefileR               Create 'Makefiles' Using R
  ManagedCloudProvider    Providing the Kubernetes-Like Functions for the
                          Non-Kubernetes Cloud Service
  MandalaR                Building Mandalas from Parametric Equations of
                          Classical Curves
  Mangrove                Risk Prediction on Trees
  ManifoldOptim           An R Interface to the 'ROPTLIB' Library for
                          Riemannian Manifold Optimization
  ManlyMix                Manly Mixture Modeling and Model-Based
                          Clustering
  MannWhitneyCopula       Computing Mann-Whitney Effect Based on Copulas
  MantaID                 A Machine-Learning Based Tool to Automate the
                          Identification of Biological Database IDs
  ManyIVsNets             Environmental Phillips Curve Analysis with
                          Multiple Instrumental Variables and Networks
  ManyTests               Multiple Testing Procedures of Cox (2011) and
                          Wong and Cox (2007)
  Map2NCBI                Mapping Markers to the Nearest Genomic Feature
  MapGAM                  Mapping Smoothed Effect Estimates from
                          Individual-Level Data
  Mapinguari              Process-Based Biogeographical Analysis
  MapperAlgo              Topological Data Analysis: Mapper Algorithm
  MappingCalc             Mapping Calculator for EQ-5D Utility Scores
  MarZIC                  Marginal Mediation Effects with Zero-Inflated
                          Compositional Mediator
  MareyMap                Estimation of Meiotic Recombination Rates Using
                          Marey Maps
  MarginalMaxTest         Max-Type Test for Marginal Correlation with
                          Bootstrap
  MarginalMediation       Marginal Mediation
  MariNET                 Build Network Based on Linear Mixed Models from
                          EHRs
  MarketMatching          Market Matching and Causal Impact Inference
  Markovchart             Markov Chain-Based Cost-Optimal Control Charts
  MarkowitzR              Statistical Significance of the Markowitz
                          Portfolio
  MassSpecWavelet         Peak Detection for Mass Spectrometry data using
                          wavelet-based algorithms
  MassWateR               Quality Control and Analysis of Massachusetts
                          Water Quality Data
  Massign                 Simple Matrix Construction
  MasterBayes             Maximum Likelihood and Markov Chain Monte Carlo
                          (MCMC) Methods for Pedigree Reconstruction and
                          Analysis
  MatTransMix             Clustering with Matrix Gaussian and Matrix
                          Transformation Mixture Models
  MatchGATE               Estimate Group Average Treatment Effects with
                          Matching
  MatchIt                 Nonparametric Preprocessing for Parametric
                          Causal Inference
  MatchLinReg             Combining Matching and Linear Regression for
                          Causal Inference
  MatchThem               Matching and Weighting Multiply Imputed
                          Datasets
  Matching                Multivariate and Propensity Score Matching with
                          Balance Optimization
  MatchingPursuit         Processing Time Series Data Using the Matching
                          Pursuit Algorithm
  MatrixCorrelation       Matrix Correlation Coefficients
  MatrixEQTL              Matrix eQTL: Ultra Fast eQTL Analysis via Large
                          Matrix Operations
  MatrixExtra             Extra Methods for Sparse Matrices
  MatrixGenerics          S4 Generic Summary Statistic Functions that
                          Operate on Matrix-Like Objects
  MatrixHMM               Parsimonious Families of Hidden Markov Models
                          for Matrix-Variate Longitudinal Data
  MatrixMixtures          Model-Based Clustering via Matrix-Variate
                          Mixture Models
  MatrixModels            Modelling with Sparse and Dense Matrices
  MaxIntTools             Testing Maximal Interaction in Two-Mode
                          Clustering via a Permutation Based Procedure
  MaxMC                   Maximized Monte Carlo
  MaxPro                  Maximum Projection Designs
  MaxSkew                 Orthogonal Data Projections with Maximal
                          Skewness
  MaxWiK                  Machine Learning Method Based on Isolation
                          Kernel Mean Embedding
  MaxentVariableSelection
                          Selecting the Best Set of Relevant
                          Environmental Variables along with the Optimal
                          Regularization Multiplier for Maxent Niche
                          Modeling
  MaximinInfer            Inference for Maximin Effects in
                          High-Dimensional Settings
  MazamaCoreUtils         Utility Functions for Production R Code
  MazamaLocationUtils     Manage Spatial Metadata for Known Locations
  MazamaRollUtils         Efficient Rolling Functions
  MazamaSpatialPlots      Thematic Plots for Mazama Spatial Datasets
  MazamaSpatialUtils      Spatial Data Download and Utility Functions
  MazamaTimeSeries        Core Functionality for Environmental Time
                          Series
  McMiso                  Multicore Multivariable Isotonic Regression
  Mcomp                   Data from the M-Competitions
  MeTo                    Meteorological Tools
  Meanimiles              Estimation of Meanimiles
  MeasurementDiagnostics
                          Diagnostics for Lists of Codes Based on
                          Measurements
  MedDataSets             Comprehensive Medical, Disease, Treatment, and
                          Drug Datasets
  MedDietCalc             Multi Calculator to Compute Scores of Adherence
                          to Mediterranean Diet
  MedLEA                  Morphological and Structural Features of
                          Medicinal Leaves
  MedZIsc                 Statistical Framework for Co-Mediators of
                          Zero-Inflated Single-Cell Data
  MediaK                  Calculate MeDiA_K Distance
  Mediana                 Clinical Trial Simulations
  MedianaDesigner         Power and Sample Size Calculations for Clinical
                          Trials
  MedxR                   Access Drug Regulatory Data via FDA and Health
                          Canada APIs
  MendelianRandomization
                          Mendelian Randomization Package
  Mercator                Clustering and Visualizing Distance Matrices
  Mestim                  Computes the Variance-Covariance Matrix of
                          Multidimensional Parameters Using M-Estimation
  MetAlyzer               Read and Analyze 'MetIDQ&trade;' Software
                          Output Files
  MetBrewer               Color Palettes Inspired by Works at the
                          Metropolitan Museum of Art
  MetSizeR                A Shiny App for Sample Size Estimation in
                          Metabolomic Experiments
  MetaAnalyser            An Interactive Visualisation of Meta-Analysis
                          as a Physical Weighing Machine
  MetaCycle               Evaluate Periodicity in Large Scale Data
  MetaDose                Dose-Response Meta-Regression for Meta-Analysis
  MetaEntropy             Functional Shannon Entropy for Virome
                          Mutational Analysis
  MetaHD                  A Multivariate Meta-Analysis Model for
                          High-Dimensional Data
  MetaHunt                Privacy-Preserving Meta-Analysis via Low-Rank
                          Basis Hunting
  MetaIntegration         Ensemble Meta-Prediction Framework
  MetaLandSim             Landscape and Range Expansion Simulation
  MetaNLP                 Natural Language Processing for Meta Analysis
  MetaNet                 Network Analysis for Omics Data
  MetaRVM                 Meta-Population Compartmental Model for
                          Respiratory Virus Diseases
  MetaSKAT                Meta Analysis for SNP-Set (Sequence) Kernel
                          Association Test
  MetaSubtract            Subtracting Summary Statistics of One or more
                          Cohorts from Meta-GWAS Results
  MetaUtility             Utility Functions for Conducting and
                          Interpreting Meta-Analyses
  MetaboCoreUtils         Core Utils for Metabolomics Data
  MetaboQC                Normalize Metabolomic Data using QC Signal
  MetabolAnalyze          Probabilistic Latent Variable Models for
                          Metabolomic Data
  MetabolSSMF             Simplex-Structured Matrix Factorisation for
                          Metabolomics Analysis
  MetabolicSurv           A Biomarker Validation Approach for
                          Classification and Predicting Survival Using
                          Metabolomics Signature
  MetabolicSyndrome       Diagnosis of Metabolic Syndrome
  MetabolomicsBasics      Basic Functions to Investigate Metabolomics
                          Data Matrices
  MethComp                Analysis of Agreement in Method Comparison
                          Studies
  MethEvolSIM             Simulate DNA Methylation Dynamics on Different
                          Genomic Structures along Genealogies
  MethScope               Ultra-Fast Analysis of Sparse DNA Methylome via
                          Recurrent Pattern Encoding
  MethodCompare           Evaluating Bias and Precision in Method
                          Comparison Studies
  MethodOpt               Advanced Method Optimization for
                          Spectra-Generating Sampling and Analysis
                          Instrumentation
  MetricGraph             Random Fields on Metric Graphs
  Metrics                 Evaluation Metrics for Machine Learning
  MetricsWeighted         Weighted Metrics and Performance Measures for
                          Machine Learning
  MexBrewer               Color Palettes Inspired by Works of Mexican
                          Painters and Muralists
  MexicoDataAPI           Access Mexican Data via APIs and Curated
                          Datasets
  MfUSampler              Multivariate-from-Univariate (MfU) MCMC Sampler
  Mfuzz                   Soft clustering of omics time series data
  Mhorseshoe              Approximate Algorithm for Horseshoe Prior
  MiRKAT                  Microbiome Regression-Based Kernel Association
                          Tests
  MiRNAQCD                Micro-RNA Quality Control and Diagnosis
  MiRSEA                  'MicroRNA' Set Enrichment Analysis
  MicSim                  Performing Continuous-Time Microsimulation
  MicroDatosEs            Utilities for Official Spanish Microdata
  MicroMacroMultilevel    Micro-Macro Multilevel Modeling
  MicroMoB                Discrete Time Simulation of Mosquito-Borne
                          Pathogen Transmission
  MicroNiche              Microbial Niche Measurements
  MicrobTiSDA             Microbiome Time-Series Data Analysis
  MicrobialGrowth         Estimates Growth Parameters from Models and
                          Plots the Curve
  MicrobiomeStat          Statistical Methods for Microbiome
                          Compositional Data
  MicrobiomeSurv          Biomarker Validation for Microbiome-Based
                          Survival Classification and Prediction
  Microsoft365R           Interface to the 'Microsoft 365' Suite of Cloud
                          Services
  MigConnectivity         Estimate Migratory Connectivity for Migratory
                          Animals
  MigrationDetectR        Segment-Based Migration Detection Algorithm
  MinEDfind               A Bayesian Design for Minimum Effective
                          Dosing-Finding Trial
  MinTriadic              Extension to the 'Lolog' Package for 'Triadic'
                          Network Statistics
  MindOnStats             Data sets included in Utts and Heckard's Mind
                          on Statistics
  Minirand                Minimization Randomization
  MisRepARMA              Misreported Time Series Analysis
  MiscMath                Miscellaneous Mathematical Tools
  MiscMetabar             Miscellaneous Functions for Metabarcoding
                          Analysis
  MissCP                  Change Point Detection with Missing Values
  MissMech                Testing Homoscedasticity, Multivariate
                          Normality, and Missing Completely at Random
  MissingHandle           Handles Missing Dates and Data and Converts
                          into Weekly and Monthly from Daily
  MissingPlotLSD          Missing Plot in LSD
  MissingPlotRBD          Missing Plot in RBD
  Missplot                Missing Plot Technique in Design of Experiment
  MitoHEAR                Quantification of Mitochondrial DNA
                          Heteroplasmy
  MittagLeffleR           Mittag-Leffler Family of Distributions
  MixFrac                 Fractional Factorial Designs with Alias and
                          Trend-Free Analysis
  MixGHD                  Model Based Clustering, Classification and
                          Discriminant Analysis Using the Mixture of
                          Generalized Hyperbolic Distributions
  MixLFA                  Mixture of Longitudinal Factor Analysis Methods
  MixMashNet              Tools for Multilayer and Single Layer Network
                          Modeling
  MixMatrix               Classification with Matrix Variate Normal and t
                          Distributions
  MixOptim                Mixture Optimization Algorithm
  MixRF                   A Random-Forest-Based Approach for Imputing
                          Clustered Incomplete Data
  MixSAL                  Mixtures of Multivariate Shifted Asymmetric
                          Laplace (SAL) Distributions
  MixSIAR                 Bayesian Mixing Models in R
  MixSemiRob              Mixture Models: Parametric, Semiparametric, and
                          Robust
  MixSim                  Simulating Data to Study Performance of
                          Clustering Algorithms
  MixStable               Parameter Estimation for Stable Distributions
                          and Their Mixtures
  MixTwice                Large-Scale Hypothesis Testing by Variance
                          Mixing
  MixedIndTests           Tests of Randomness and Tests of Independence
  MixedLevelRSDs          Mixed Level Response Surface Designs
  MixedPoisson            Mixed Poisson Models
  MixedPsy                Statistical Tools for the Analysis of
                          Psychophysical Data
  MixedTS                 Mixed Tempered Stable Distribution
  MixfMRI                 Mixture fMRI Clustering Analysis
  MixtureFitting          Fitting of Univariate Mixture Distributions to
                          Data using Various Approaches
  MixtureMissing          Robust and Flexible Model-Based Clustering for
                          Data Sets with Missing Values at Random
  Mmcsd                   Modeling Complex Longitudinal Data in a Quick
                          and Easy Way
  MoBPS                   Modular Breeding Program Simulator
  MoEClust                Gaussian Parsimonious Clustering Models with
                          Covariates and a Noise Component
  MoNAn                   Mobility Network Analysis
  MoTBFs                  Learning Hybrid Bayesian Networks using
                          Mixtures of Truncated Basis Functions
  ModEstM                 Mode Estimation, Even in the Multimodal Case
  ModLR                   Information-Theoretic Approach for Moderation
                          Analysis
  ModStatR                Statistical Modelling in Action with R
  ModTools                Building Regression and Classification Models
  ModalCens               Parametric Modal Regression with Right
                          Censoring
  ModalForecast           Parametric Modal ARIMA Models using the SKD
                          Family
  Modalclust              Hierarchical Modal Clustering
  ModelMap                Modeling and Map Production using Random Forest
                          and Related Stochastic Models
  ModelMatrixModel        Create Model Matrix and Save the Transforming
                          Parameters
  ModelMetrics            Rapid Calculation of Model Metrics
  Modelcharts             Classification Model Charts
  Modeler                 Classes and Methods for Training and Using
                          Binary Prediction Models
  MolgenisArmadillo       Armadillo Client for the Armadillo Service
  MolgenisAuth            'OpenID Connect' Discovery and Authentication
  MomTrunc                Moments of Folded and Doubly Truncated
                          Multivariate Distributions
  Mondrian                A Simple Graphical Representation of the
                          Relative Occurrence and Co-Occurrence of Events
  MonoPhy                 Explore Monophyly of Taxonomic Groups in a
                          Phylogeny
  MonoPoly                Functions to Fit Monotone Polynomials
  MonotoneHazardRatio     Nonparametric Estimation and Inference of a
                          Monotone Hazard Ratio Function
  MonotonicityTest        Nonparametric Bootstrap Test for Regression
                          Monotonicity
  Monte.Carlo.se          Monte Carlo Standard Errors
  MonteCarloSEM           Monte Carlo Simulation for Structural Equation
                          Modeling
  MoonShineR              Predict Moonlight, Sunlight, and/or Twilight
                          Ground Illuminance
  MorphSim                Simulate Discrete Character Data along
                          Phylogenetic Trees
  Morpho                  Calculations and Visualisations Related to
                          Geometric Morphometrics
  MorphoRegions           Analysis of Regionalization Patterns in
                          Serially Homologous Structures
  MorphoTools2            Multivariate Morphometric Analysis
  MortCast                Estimation and Projection of Age-Specific
                          Mortality Rates
  MortalityGaps           The Double-Gap Life Expectancy Forecasting
                          Model
  MortalityLaws           Parametric Mortality Models, Life Tables and
                          HMD
  MortalityTables         A Framework for Various Types of Mortality /
                          Life Tables
  MplusAutomation         An R Package for Facilitating Large-Scale
                          Latent Variable Analyses in Mplus
  MplusLGM                Automate Latent Growth Mixture Modelling in
                          'Mplus'
  MplusTrees              Decision Trees with Structural Equation Models
                          Fit in 'Mplus'
  Mqrcm                   M-Quantile Regression Coefficients Modeling
  MsCoreUtils             Core Utils for Mass Spectrometry Data
  MsExperiment            Infrastructure for Mass Spectrometry
                          Experiments
  MsFeatures              Functionality for Mass Spectrometry Features
  MuChPoint               Multiple Change Point
  MuFiMeshGP              Multi-Fidelity Emulator for Computer
                          Experiments with Tunable Fidelity Levels
  MuMIn                   Multi-Model Inference
  MuPETFlow               Multiple Ploidy Estimation Tool for all Species
                          Compatible with Flow Cytometry
  MuViCP                  MultiClass Visualizable Classification using
                          Combination of Projections
  MultANOVA               Analysis of Designed High-Dimensional Data
                          using the Comprehensive MultANOVA Framework
  MultBiplotR             Multivariate Analysis Using Biplots in R
  MultEq                  Multiple Equivalence Tests and Simultaneous
                          Confidence Intervals
  MultNonParam            Multivariate Nonparametric Methods
  MultOrdRS               Model Multivariate Ordinal Responses Including
                          Response Styles
  MultRegCMP              Bayesian Multivariate Conway-Maxwell-Poisson
                          Regression Model for Correlated Count Data
  MultSurvTests           Permutation Tests for Multivariate Survival
                          Analysis
  MultiATSM               Multicountry Term Structure of Interest Rates
                          Models
  MultiAssayExperiment    Software for the integration of multi-omics
                          experiments in Bioconductor
  MultiBD                 Multivariate Birth-Death Processes
  MultiCOAP               High-Dimensional Covariate-Augmented
                          Overdispersed Multi-Study Poisson Factor Model
  MultiClassROC           ROC Curves for Multi-Class Analysis
  MultiDataSet            Implementation of MultiDataSet and ResultSet
  MultiDiscreteRNG        Generate Multivariate Discrete Data
  MultiFit                Multiscale Fisher's Independence Test for
                          Multivariate Dependence
  MultiGlarmaVarSel       Variable Selection in Sparse Multivariate
                          GLARMA Models
  MultiGrey               Fitting and Forecasting of Grey Model for
                          Multivariate Time Series Data
  MultiGroupO             MultiGroup Method and Simulation Data Analysis
  MultiGroupSequential    Group-Sequential Procedures with Multiple
                          Hypotheses
  MultiJoin               Enables Efficient Joining of Data File on
                          Common Fields using the Unix Utility Join
  MultiKink               Estimation and Inference for Multi-Kink
                          Quantile Regression
  MultiLCIRT              Multidimensional Latent Class Item Response
                          Theory Models
  MultiLevelOptimalBayes
                          Regularized Bayesian Estimator for Two-Level
                          Latent Variable Models
  MultiNMix               Multi-Species N-Mixture (MNM) Models with
                          'nimble'
  MultiObjMatch           Multi-Objective Matching Algorithm
  MultiOrd                Generation of Multivariate Ordinal Variates
  MultiPhen               A Package to Test for Multi-Trait Association
  MultiRFM                High-Dimensional Multi-Study Robust Factor
                          Model
  MultiRNG                Multivariate Pseudo-Random Number Generation
  MultiResponseR          Analysis of Data from Multiple-Response
                          Questionnaires
  MultiRobust             Multiply Robust Methods for Missing Data
                          Problems
  MultiSkew               Measures, Tests and Removes Multivariate
                          Skewness
  MultiSpline             Spline-Based Nonlinear Modeling for Multilevel
                          and Longitudinal Data
  MultiStatM              Multivariate Statistical Methods
  MultiTraits             Analyzing and Visualizing Multidimensional
                          Plant Traits
  MultipleBreakpoints     Estimating Multiple Breakpoints for a Sequence
                          of Realizations of Bernoulli Variables
  MultipleBubbles         Test and Detection of Explosive Behaviors for
                          Time Series
  MultipleRegression      Multiple Regression Analysis
  MultiplierDEA           Multiplier Data Envelopment Analysis and Cross
                          Efficiency
  MultiscaleDTM           Multi-Scale Geomorphometric Terrain Attributes
  MultiscaleSCP           Multiscale Systematic Conservation Planning
                          Across Nested H3 Grids
  MultisiteMediation      Causal Mediation Analysis in Multisite Trials
  MultivariateAnalysis    Pacote Para Analise Multivariada
  MultivariateRandomForest
                          Models Multivariate Cases Using Random Forests
  MultivariateTrendAnalysis
                          Univariate and Multivariate Trend Testing
  MultiwayRegression      Perform Tensor-on-Tensor Regression
  MulvariateRandomForestVarImp
                          Variable Importance Measures for Multivariate
                          Random Forests
  MvBinary                Modelling Multivariate Binary Data with Blocks
                          of Specific One-Factor Distribution
  My.stepwise             Stepwise Variable Selection Procedures for
                          Regression Analysis
  Mychisq                 Chi-Squared Test for Goodness of Fit and
                          Independence Test
  MyoScore                Transcriptomic Scoring for Human Skeletal
                          Muscle Health
  N2H4                    Handling Methods for Naver News Text Crawling
  N2R                     Fast and Scalable Approximate k-Nearest
                          Neighbor Search Methods using 'N2' Library
  NAC                     Network-Adjusted Covariates for Community
                          Detection
  NACHO                   NanoString Quality Control Dashboard
  NADA                    Nondetects and Data Analysis for Environmental
                          Data
  NADA2                   Data Analysis for Censored Environmental Data
  NAEPirtparams           IRT Parameters for the National Assessment of
                          Education Progress
  NAEPprimer              The NAEP Primer
  NAM                     Nested Association Mapping
  NAP                     Non-Local Alternative Priors in Psychology
  NAPrior                 Network Meta-Analytic Predictive Prior for
                          Mid-Trial SoC Changes
  NAVAECI                 Non-Asymptotically Valid and Asymptotically
                          Exact (NAVAE) Confidence Intervals
  NB.MClust               Negative Binomial Model-Based Clustering
  NBAloveR                Help Basketball Data Analysis
  NBBDesigns              Neighbour Balanced Block Designs (NBBDesigns)
  NBDCtools               National Institutes of Health Brain Development
                          Cohorts Data Hub Tools
  NBDdirichlet            NBD-Dirichlet Model of Consumer Buying Behavior
                          for Marketing Research
  NBDesign                Design and Monitoring of Clinical Trials with
                          Negative Binomial Endpoint
  NBKP                    Beta Kernel Process Modeling with Negative
                          Binomial Response
  NBLDA                   Negative Binomial Linear Discriminant Analysis
  NBPSeq                  Negative Binomial Models for RNA-Sequencing
                          Data
  NBR                     Network-Based R-Statistics using Mixed Effects
                          Models
  NBShiny                 Interactive Document for Working with Naive
                          Bayes Classification
  NBShiny2                Interactive Document for Working with Naive
                          Bayes Classification
  NBShiny3                Interactive Document for Working with Naive
                          Bayes Classification
  NBtsVarSel              Variable Selection in a Specific Regression
                          Time Series of Counts
  NCA                     Necessary Condition Analysis
  NCC                     Simulation and Analysis of Platform Trials with
                          Non-Concurrent Controls
  NCSCopula               Non-Central Squared Copula Models Estimation
  NCmisc                  Miscellaneous Functions for Creating Adaptive
                          Functions and Scripts
  NCutYX                  Clustering of Omics Data of Multiple Types with
                          a Multilayer Network Representation
  NDP                     Interactive Presentation for Working with
                          Normal Distribution
  NEpiC                   Network Assisted Algorithm for Epigenetic
                          Studies Using Mean and Variance Combined
                          Signals
  NFLSimulatoR            Simulating Plays and Drives in the NFL
  NFWdist                 The Standard Distribution Functions for the 3D
                          NFW Profile
  NGBVS                   Bayesian Variable Selection for SNP Data using
                          Normal-Gamma
  NGCHM                   Next Generation Clustered Heat Maps
  NGLVieweR               Interactive 3D Visualization of Molecular
                          Structures
  NHANES                  Data from the US National Health and Nutrition
                          Examination Study
  NHLData                 Scores for Every Season Since the Founding of
                          the NHL in 1917
  NHPoisson               Modelling and Validation of Non Homogeneous
                          Poisson Processes
  NHSDataDictionaRy       NHS Data Dictionary Toolset for NHS Lookups
  NHSRdatasets            NHS and Healthcare-Related Data for Education
                          and Training
  NHSRplotthedots         Draw XmR Charts for NHS 'Making Data Count'
                          Programme
  NHSRwaitinglist         Waiting List Metrics Using Queuing Theory
  NIMAA                   Nominal Data Mining Analysis
  NIPTeR                  Fast and Accurate Trisomy Prediction in
                          Non-Invasive Prenatal Testing
  NIRStat                 Novel Statistical Methods for Studying
                          Near-Infrared Spectroscopy (NIRS) Time Series
                          Data
  NISTnls                 Nonlinear least squares examples from NIST
  NISTunits               Fundamental Physical Constants and Unit
                          Conversions from NIST
  NLP                     Natural Language Processing Infrastructure
  NLPclient               Stanford 'CoreNLP' Annotation Client
  NLPutils                Natural Language Processing Utilities
  NLPwavelet              Bayesian Wavelet Analysis Using Non-Local
                          Priors
  NMA                     Network Meta-Analysis Based on Multivariate
                          Meta-Analysis and Meta-Regression Models
  NMADTA                  Network Meta-Analysis of Multiple Diagnostic
                          Tests
  NMAR                    Estimation under not Missing at Random
                          Nonresponse
  NMAforest               Forest Plots for Network Meta-Analysis with
                          Proportion for Paths and Studies
  NMAoutlier              Detecting Outliers in Network Meta-Analysis
  NMF                     Algorithms and Framework for Nonnegative Matrix
                          Factorization (NMF)
  NMFN                    Non-Negative Matrix Factorization
  NMMIPW                  Inverse Probability Weighting under
                          Non-Monotone Missing
  NMOF                    Numerical Methods and Optimization in Finance
  NMRphasing              Phase Error Correction and Baseline Correction
                          for One Dimensional ('1D') 'NMR' Data
  NMTox                   Dose-Response Relationship Analysis of
                          Nanomaterial Toxicity
  NMVANOVA                Novice Model Variation ANOVA
  NMcalc                  Basic Calculations for PK/PD Modeling
  NMdata                  Preparation, Checking and Post-Processing Data
                          for PK/PD Modeling
  NMsim                   Seamless 'Nonmem' Simulation Platform
  NNMIS                   Nearest Neighbor Based Multiple Imputation for
                          Survival Data with Missing Covariates
  NNMoMo                  Neural Network Extension to 'StMoMo' for
                          Lee-Carter Modeling
  NNS                     Nonlinear Nonparametric Statistics
  NO.PING.PONG            Incorporating Previous Findings When Evaluating
                          New Data
  NORMAgene               Data-Driven qRT-PCR Normalization Using
                          NORMAgene
  NOVA                    Neural Output Visualization and Analysis
  NPBBBDAefficiency       A-Efficiency for Nested Partially Balanced
                          Bipartite Block (NPBBB) Designs
  NPBayesImputeCat        Non-Parametric Bayesian Multiple Imputation for
                          Categorical Data
  NPCD                    Nonparametric Methods for Cognitive Diagnosis
  NPCDTools               The Nonparametric Classification Methods for
                          Cognitive Diagnosis
  NPCirc                  Nonparametric Circular Methods
  NPCox                   Nonparametric and Semiparametric Proportional
                          Hazards Model
  NPFD                    N-Power Fourier Deconvolution
  NPHMC                   Sample Size Calculation for the Proportional
                          Hazards Mixture Cure Model
  NPHazardRate            Nonparametric Hazard Rate Estimation
  NPIstats                Nonparametric Predictive Inference
  NPLStoolbox             N-Way Partial Least Squares Modelling of
                          Multi-Way Data
  NPMLEcmprsk             Type-Specific Failure Rate and Hazard Rate on
                          Competing Risks Data
  NPP                     Normalized Power Prior Bayesian Analysis
  NPRED                   Predictor Identifier: Nonparametric Prediction
  NPStability             Rank-Based Stability Index (RSI) for Genotype
                          by Environment Studies
  NPflow                  Bayesian Nonparametrics for Automatic Gating of
                          Flow-Cytometry Data
  NRMSampling             Sampling Design and Estimation Methods for
                          Natural Resource Management
  NRMstatsML              Statistical and Machine Learning Engine for
                          Long-Term Natural Resource Management Data
  NRejections             Metrics for Multiple Testing with Correlated
                          Outcomes
  NSM3                    Functions and Datasets to Accompany Hollander,
                          Wolfe, and Chicken - Nonparametric Statistical
                          Methods, Third Edition
  NSMM                    Non-Stationary Multivariate (Copula-Based)
                          Framework, Hydrological Applications
  NSO1212                 National Statistical Office of Mongolia's Open
                          Data API Handler
  NSR                     'Native Status Resolver'
  NST                     Normalized Stochasticity Ratio
  NScluster               Simulation and Estimation of the Neyman-Scott
                          Type Spatial Cluster Models
  NTLKwIEx                Computation of NTLKwIEx Distribution Properties
  NTS                     Nonlinear Time Series Analysis
  NTSS                    Nonparametric Tests in Spatial Statistics
  NU.Learning             Nonparametric and Unsupervised Learning from
                          Cross-Sectional Observational Data
  NUCOMBog                NUtrient Cycling and COMpetition Model
                          Undisturbed Open Bog Ecosystems in a Temperate
                          to Sub-Boreal Climate
  NUETON                  Nitrogen Use Efficiency Toolkit on Numerics
  NUSS                    Mixed N-Grams and Unigram Sequence Segmentation
  NVAR                    Nonlinear Vector Autoregression Models
  NVCSSL                  Nonparametric Varying Coefficient
                          Spike-and-Slab Lasso
  NaileR                  Interpreting Latent Variables with AI
  NameNeedle              Using Needleman-Wunsch to Match Sample Names
  NatParksPalettes        Color Palettes Inspired by National Parks
  NatureSounds            Animal Sounds for Bioacustic Analysis
  NbClust                 Determining the Best Number of Clusters in a
                          Data Set
  NeEDS4BigData           New Experimental Design Based Subsampling
                          Methods for Big Data
  NeStage                 Effective Population Size from Stage-Structured
                          Populations
  Nebulosa                Single-Cell Data Visualisation Using Kernel
                          Gene-Weighted Density Estimation
  Necklaces               Necklaces and Bracelets
  NegBinBetaBinreg        Negative Binomial and Beta Binomial Bayesian
                          Regression Models
  NegativeControlOutcomeAdjustment
                          Estimation of Vaccine Efficacy using Negative
                          Control Outcomes
  Neighboot               Neighborhood Bootstrap Method for RDS
  Nematode                Ecological Indices Calculator for Nematode
                          Communities
  NestMRMC                Single Reader Between-Cases AUC Estimator in
                          Nested Data
  NestedMenu              A Nested Menu Widget for 'Shiny' Applications
  Nestimate               Network Estimation, Bootstrap, and Higher-Order
                          Analysis
  NetCluster              Clustering for networks
  NetCoupler              Inference of Causal Links Between a Network and
                          an External Variable
  NetDA                   Network-Based Discriminant Analysis Subject to
                          Multi-Label Classes
  NetExplorer             Network Explorer
  NetGreg                 Network-Guided Penalized Regression (NetGreg)
  NetIndices              Estimating Network Indices, Including Trophic
                          Structure of Foodwebs in R
  NetInt                  Methods for Unweighted and Weighted Network
                          Integration
  NetLogoR                Build and Run Spatially Explicit Agent-Based
                          Models
  NetMix                  Dynamic Mixed-Membership Network Regression
                          Model
  NetOrigin               Origin Estimation for Propagation Processes on
                          Complex Networks
  NetPreProc              Network Pre-Processing and Normalization
  NetRep                  Permutation Testing Network Module Preservation
                          Across Datasets
  NetSci                  Calculates Basic Network Measures Commonly Used
                          in Network Medicine
  NetSimR                 Actuarial Functions for Non-Life Insurance
                          Modelling
  NetSurvProx             'NetSurvProx': Network-Based Survival Analysis
                          via Proximal Methods
  NetVAR                  Network Structures in VAR Models
  NetWeaver               Graphic Presentation of Complex Genomic and
                          Network Data Analysis
  NetworkChange           Bayesian Package for Network Changepoint
                          Analysis
  NetworkComparisonTest   Statistical Comparison of Two Networks Based on
                          Several Invariance Measures
  NetworkComparr          Statistical Comparison of Networks
  NetworkDistance         Distance Measures for Networks
  NetworkExtinction       Extinction Simulation in Ecological Networks
  NetworkInference        Inferring Latent Diffusion Networks
  NetworkReg              Generalized Linear Regression Models on
                          Network-Linked Data with Statistical Inference
  NetworkRiskMeasures     Risk Measures for (Financial) Networks
  NetworkToolbox          Methods and Measures for Brain, Cognitive, and
                          Psychometric Network Analysis
  NeuDist                 Univariate Continuous Distributions with Model
                          Diagnostics
  NeuralEstimators        Likelihood-Free Parameter Estimation using
                          Neural Networks
  NeuralNetTools          Visualization and Analysis Tools for Neural
                          Networks
  NeuralSens              Sensitivity Analysis of Neural Networks
  NeuroDataSets           A Comprehensive Collection of Neuroscience and
                          Brain-Related Datasets
  NeuroDecodeR            Decode Information from Neural Activity
  NeutroCODsAnalysis      Neutrosophic Analysis Crossover Designs
  NeutroIBDAnalysis       Neutrosophic Analysis of Incomplete Block
                          Designs
  NeutroRCDsAnalysis      Neutrosophic Analysis of Row Column Designs
  Newdistns               Computes Pdf, Cdf, Quantile and Random Numbers,
                          Measures of Inference for 19 General Families
                          of Distributions
  NewmanOmics             Extending the Newman Studentized Range
                          Statistic to Transcriptomics
  NiLeDAM                 Monazite Dating for the NiLeDAM Team
  NightDay                Night and Day Boundary Plot Function
  NipponMap               Japanese Map Data and Functions
  NitrogenUptake2016      Data and Source Code From: Nitrogen Uptake and
                          Allocation Estimates for Spartina Alterniflora
                          and Distichlis Spicata
  NlcOptim                Solve Nonlinear Optimization with Nonlinear
                          Constraints
  NlinTS                  Models for Non Linear Causality Detection in
                          Time Series
  NlsyLinks               Utilities and Kinship Information for Research
                          with the NLSY
  Nmisc                   Miscellaneous Functions Used at 'Numeract LLC'
  Nmix                    Bayesian Inference on Univariate Normal
                          Mixtures
  NoSleepR                Prevent System Sleep During Long R Tasks
  NobBS                   Nowcasting by Bayesian Smoothing
  NonCompart              Noncompartmental Analysis for Pharmacokinetic
                          Data
  NonNorMvtDist           Multivariate Lomax (Pareto Type II) and Its
                          Related Distributions
  NonParRolCor            a Non-Parametric Statistical Significance Test
                          for Rolling Window Correlation
  NonProbEst              Estimation in Nonprobability Sampling
  NonlinearDiD            Staggered Difference-in-Differences with
                          Nonlinear Outcomes
  NonlinearTSA            Nonlinear Time Series Analysis
  Nonpareil               Metagenome Coverage Estimation and Projections
                          for 'Nonpareil'
  NormData                Derivation of Regression-Based Normative Data
  NormExpression          Normalize Gene Expression Data using Evaluated
                          Methods
  NormPsy                 Normalisation of Psychometric Tests
  NormalLaplace           The Normal Laplace Distribution
  NormalityAssessment     A Graphical User Interface for Testing
                          Normality Visually
  NostalgiR               Advanced Text-Based Plots
  NovelDistns             Computes PDF, CDF, Quantile, Random Numbers and
                          Measures of Inference for 3 General Families of
                          Distributions
  NoviceDeveloperResources
                          Resources to Assist Novice Developers
  NoviceDeveloperResources2
                          Further Resources to Assist Novice Developers
  NumericEnsembles        Automatically Runs 18 Individual and 14
                          Ensembles of Models
  Numero                  Statistical Framework to Define Subgroups in
                          Complex Datasets
  NutrienTrackeR          Food Composition Information and Dietary
                          Assessment
  OAIHarvester            Harvest Metadata Using OAI-PMH Version 2.0
  OBASpatial              Objective Bayesian Analysis for Spatial
                          Regression Models
  OBIC                    Calculate the Open Bodem Index (OBI) Score
  OBL                     Optimum Block Length
  OBMbpkg                 Estimate the Population Size for the Mb
                          Capture-Recapture Model
  OBRE                    Optimal B-Robust Estimator Tools
  OBsMD                   Objective Bayesian Model Discrimination in
                          Follow-Up Designs
  OCNet                   Optimal Channel Networks
  OCSdata                 Download Data from the 'Open Case Studies'
                          Repository
  ODMeans                 OD-Means: k-Means for Origin-Destination
  ODRF                    Oblique Decision Random Forest for
                          Classification and Regression
  ODS                     Statistical Methods for Outcome-Dependent
                          Sampling Designs
  ODT                     Optimal Decision Trees Algorithm
  ODataQuery              Querying on 'OData'
  OECD                    Search and Extract Data from the OECD
  OEFPIL                  Optimal Estimation of Function Parameters by
                          Iterated Linearization
  OGI                     Objective General Index
  OHPL                    Ordered Homogeneity Pursuit Lasso for Group
                          Variable Selection
  OLCPM                   Online Change Point Detection for Matrix-Valued
                          Time Series
  OLSengine               Transparent and Assisted Linear Modeling Engine
  OLStrajr                Ordinary Least Squares Trajectory Analysis
  ONAM                    Fitting Interpretable Neural Additive Models
                          Using Orthogonalization
  ONEST                   Observers Needed to Evaluate Subjective Tests
  OOBCurve                Out of Bag Learning Curve
  OOR                     Optimistic Optimization in R
  OPC                     The Online Principal Component Estimation
                          Method
  OPCreg                  Online Principal Component Regression for
                          Online Datasets
  OPDOE                   Optimal Design of Experiments
  OPI                     Open Perimetry Interface
  OPL                     Optimal Policy Learning
  OPSR                    Ordered Probit Switching Regression
  OPTS                    Optimization via Subsampling (OPTS)
  OPTeCD                  Optimal Partial Tetra-Allele Cross Designs
  OPTtesting              Optimal Testing
  ORCME                   Order Restricted Clustering for Microarray
                          Experiments
  ORFID                   Manage and Summarize Data from Oregon RFID ORMR
                          and ORSR Antenna Readers
  ORION                   Ordinal Relations
  ORIONZ.G                EAP Scoring in Exploratory FA Solutions with
                          Correlated Residuals
  ORKM                    The Online Regularized K-Means Clustering
                          Algorithm
  ORTH.Ord                Alternating Logistic Regression with
                          Orthogonalized Residuals for Correlated Ordinal
                          Outcomes
  ORTSC                   Connects to Google Cloud API for Label
                          Detection
  ORscraper               Extract Information from Clinical Reports from
                          'Oncomine Reporter' and NCBI 'ClinVar'
  OSAT                    OSAT: Optimal Sample Assignment Tool
  OSCARS                  Global Bounded Optimization by the OSCARS-II
                          Algorithm
  OSCV                    One-Sided Cross-Validation
  OSDR                    Finds an Optimal System of Distinct
                          Representatives
  OSFD                    Output Space-Filling Design
  OSIRCR                  Cosine Regression-Based Online Sliced Inverse
                          Regression Algorithm
  OSLdecomposition        Signal Component Analysis for Optically
                          Stimulated Luminescence
  OSMscale                Add a Scale Bar to 'OpenStreetMap' Plots
  OSNMTF                  Orthogonal Sparse Non-Negative Matrix
                          Tri-Factorization
  OSsurvival              Assessing Surrogacy with a Censored Outcome
  OTBsegm                 Apply Unsupervised Segmentation Algorithms from
                          'OTB'
  OTE                     Optimal Trees Ensembles for Regression,
                          Classification and Class Membership Probability
                          Estimation
  OTRselect               Variable Selection for Optimal Treatment
                          Decision
  OTUtable                North Temperate Lakes - Microbial Observatory
                          16S Time Series Data and Functions
  OTclust                 Mean Partition, Uncertainty Assessment, Cluster
                          Validation and Visualization Selection for
                          Cluster Analysis
  OTrecod                 Data Fusion using Optimal Transportation Theory
  OUwie                   Analysis of Evolutionary Rates in an OU
                          Framework
  OVL.CI                  Inference on the Overlap Coefficient
  OVtool                  Omitted Variable Tool
  OWEA                    Optimal Weight Exchange Algorithm for Optimal
                          Designs for Three Models
  Oarray                  Arrays with Arbitrary Offsets
  OasisR                  Outright Tool for the Analysis of Spatial
                          Inequalities and Segregation
  Observation             Collect and Process Physical Activity Direct
                          Observation Data
  OceanView               Visualisation of Oceanographic Data and Model
                          Output
  OddsPlotty              Odds Plot to Visualise a Logistic Regression
                          Model
  OdysseusCharacterizationModule
                          Handy and Minimalistic Common Data Model
                          Characterization
  OdysseusPathwayModule   Cohort Pathway Analysis with Pre-Index Event
                          Support
  OdysseusSurvivalModule
                          Cohort-Based Single-Event Survival Utilities
  OenoKPM                 Modeling the Kinetics of Carbon Dioxide
                          Production in Alcoholic Fermentation
  OhdsiReportGenerator    Observational Health Data Sciences and
                          Informatics Report Generator
  OhdsiShinyAppBuilder    Viewing Observational Health Data Sciences and
                          Informatics Results via 'shiny' Modules
  Ohit                    OGA+HDIC+Trim and High-Dimensional Linear
                          Regression Models
  OkNNE                   A k-Nearest Neighbours Ensemble via Optimal
                          Model Selection for Regression
  OlinkAnalyze            Facilitate Analysis of Proteomic Data from
                          Olink
  OlinkAnalyzeVignettes   Vignettes for Analyzing Data using
                          'OlinkAnalyze'
  OlympicRshiny           'Shiny' Application for Olympic Data
  OmegaG                  Omega-Generic: Composite Reliability of
                          Multidimensional Measures
  OmicFlow                Fast and Efficient (Automated) Analysis of
                          Sparse Omics Data
  OmicKriging             Poly-Omic Prediction of Complex TRaits
  OmicNavigator           Open-Source Software for 'Omic' Data Analysis
                          and Visualization
  OmicNetR                Network-Based Integration of Multi-Omics Data
                          Using Sparse CCA
  OmicSense               Biosensor Development using Omics Data
  OmicsPLS                Data Integration with Two-Way Orthogonal
                          Partial Least Squares
  OmicsPrepR              Unified Preprocessing Toolkit for Proteomics
                          and Metabolomics
  OmicsQC                 Nominating Quality Control Outliers in Genomic
                          Profiling Studies
  Omisc                   DeFries-Fulker Analysis and Univariate
                          Bootstrapping
  OmopConstructor         Build Tables in the OMOP Common Data Model
  OmopOnSpark             Using a Common Data Model on 'Spark'
  OmopSketch              Characterise Tables of an OMOP Common Data
                          Model Instance
  OmopStudyBuilder        Build Reproducible Network Studies for OMOP
                          Common Data Model
  OmopViewer              Visualise OMOP Results using 'shiny'
                          Applications
  OnAge                   Test of Between-Group Differences in the Onset
                          of Senescence
  OncoDataSets            A Comprehensive Collection of Cancer Types and
                          Cancer-Related Datasets
  OncoSubtype             Predict Cancer Subtypes Based on TCGA Data
                          using Machine Learning Method
  Oncofilterfast          Aids in the Analysis of Genes Influencing
                          Cancer Survival
  Oncotree                Estimating Oncogenetic Trees
  One4All                 Validate, Share, and Download Data
  OneArm2stage            Phase II Single-Arm Two-Stage Designs with
                          Time-to-Event Outcomes
  OneArmTTE               One-Arm Clinical Trial Designs for
                          Time-to-Event Endpoint
  OneR                    One Rule Machine Learning Classification
                          Algorithm with Enhancements
  OneSampleLogRankTest    One-Sample Log-Rank Test
  OneSampleMR             One Sample Mendelian Randomization and
                          Instrumental Variable Analyses
  OneStep                 One-Step Estimation
  OneTwoSamples           Deal with One and Two (Normal) Samples
  OnlineSurr              Surrogate Evaluation for Jointly Longitudinal
                          Outcome and Surrogate
  OnomasticDiversity      Onomastic Diversity Measures
  OofAExp                 Order-of-Addition Experiments
  OpEnCAST                Optimized Ensemble Model for C and A
                          Methylation Search in Plant
  OpEnHiMR                Optimization Based Ensemble Model for
                          Prediction of Histone Modifications in Rice
  OpeNoise                Environmental Noise Pollution Data Analysis
  Open.Visualization.Academy
                          Content to Support Classes Taught Through the
                          Open Visualization Academy
  OpenBARD                Open British Arboricultural Record Dataset
  OpenCL                  Interface allowing R to use OpenCL
  OpenImageR              An Image Processing Toolkit
  OpenML                  Open Machine Learning and Open Data Platform
  OpenMindat              Quickly Retrieve Datasets from the 'Mindat' API
  OpenMx                  Extended Structural Equation Modelling
  OpenRange               Code to Access Open Access Species Range Maps
  OpenRepGrid             Tools to Analyze Repertory Grid Data
  OpenRepGrid.ic          Interpretive Clustering for Repertory Grids
  OpenSourceAP.DownloadR
                          Download Open Source Asset Pricing (OpenAP)
                          Data Directly
  OpenSpecy               Analyze, Process, Identify, and Share Raman and
                          (FT)IR Spectra
  OpenStreetMap           Access to Open Street Map Raster Images
  Opportunistic           Routing Distribution, Broadcasts, Transmissions
                          and Receptions in an Opportunistic Network
  Opt5PL                  Optimal Designs for the 5-Parameter Logistic
                          Model
  OptCirClust             Circular, Periodic, or Framed Data Clustering:
                          Fast, Optimal, and Reproducible
  OptGS                   Near-Optimal Group-Sequential Designs for
                          Continuous Outcomes
  OptHedging              Estimation of value and hedging strategy of
                          call and put options.
  OptHoldoutSize          Estimation of Optimal Size for a Holdout Set
                          for Updating a Predictive Score
  OptM                    Estimating the Optimal Number of Migration
                          Edges from 'Treemix'
  OptOTrials              Optimal Two-Stage Designs for Ordered
                          Categorical Outcomes
  OptSig                  Optimal Level of Significance for Regression
                          and Other Statistical Tests
  OptimModel              Perform Nonlinear Regression Using 'optim' as
                          the Optimization Engine
  OptimaRegion            Confidence Regions for Optima of Response
                          Surfaces
  OptimalBinningWoE       Optimal Binning and Weight of Evidence
                          Framework for Modeling
  OptimalCutpoints        Computing Optimal Cutpoints in Diagnostic Tests
  OptimalDesign           A Toolbox for Computing Efficient Designs of
                          Experiments
  OptimalRerandExpDesigns
                          Optimal Rerandomization Experimental Designs
  OptimalSurrogate        Model Free Approach to Quantifying Surrogacy
  OptimalTiming           Optimal Timing Identification
  OptionPricing           Option Pricing with Efficient Simulation
                          Algorithms
  OralOpioids             Retrieving Oral Opioid Information
  Orangutan               Automated Analysis of Phenotypic Data
  Orcs                    Omnidirectional R Code Snippets
  OrdCD                   Ordinal Causal Discovery
  OrdFacReg               Least Squares, Logistic, and Cox-Regression
                          with Ordered Predictors
  OrdMonReg               Compute Least Squares Estimates of One Bounded
                          or Two Ordered Isotonic Regression Curves
  OrdNor                  Concurrent Generation of Ordinal and Normal
                          Data with Given Correlation Matrix and Marginal
                          Distributions
  OrgHeatmap              Visualization Tool for Numerical Data on
                          Human/Mouse Organs and Organelles
  OrgMassSpecR            Organic Mass Spectrometry
  OrganismDbi             Software to enable the smooth interfacing of
                          different database packages
  OrigamiPlot             A Visualization Tool Enhancing Radar Plot
                          Visualizations for Multivariate Data
  OrthoPanels             Dynamic Panel Models with Orthogonal
                          Reparameterization of Fixed Effects
  OryzaProbe              Rice Microarray Probe ID Conversion, from Probe
                          ID to RAP-DB ID
  OscillatorGenerator     Generation of Customizable, Discretized Time
                          Series of Oscillating Species
  OssaNMA                 Optimal Sample Size and Allocation with a
                          Network Meta-Analysis
  Ostats                  O-Stats, or Pairwise Community-Level Niche
                          Overlap Statistics
  OtsuFire                Fire Scars, Severity and Regeneration Mapping
                          Using 'Otsu' Thresholding
  OtsuSeg                 Raster Thresholding Using Otsu´s Algorithm
  OutSeekR                Statistical Approach to Outlier Detection in
                          RNA-Seq and Related Data
  OutcomeWeights          Outcome Weights of Treatment Effect Estimators
  OutliersLearn           Educational Outlier Package with Common Outlier
                          Detection Algorithms
  OutliersO3              Draws Overview of Outliers (O3) Plots
  OwenQ                   Owen Q-Function
  OxSR                    Soil Iron Oxides via Diffuse Reflectance
  OxyBS                   Processing of Oxy-Bisulfite Microarray Data
  PAC                     Partition-Assisted Clustering and Multiple
                          Alignments of Networks
  PACVr                   Plastome Assembly Coverage Visualization
  PADOG                   Pathway Analysis with Down-weighting of
                          Overlapping Genes (PADOG)
  PAFit                   Generative Mechanism Estimation in Temporal
                          Complex Networks
  PAGE                    Predictor-Assisted Graphical Models under
                          Error-in-Variables
  PAGFL                   Joint Estimation of Latent Groups and
                          Group-Specific Coefficients in (Time-Varying)
                          Panel Data Models
  PAGWAS                  Pathway Analysis Methods for Genomewide
                          Association Data
  PAICE                   Phylogeographic Analysis of Island Colonization
                          Events
  PAMhm                   Generate Heatmaps Based on Partitioning Around
                          Medoids (PAM)
  PAMmisc                 Miscellaneous Functions for Passive Acoustic
                          Analysis
  PAMpal                  Load and Process Passive Acoustic Data
  PAMscapes               Tools for Summarising and Analysing Soundscape
                          Data
  PANACEA                 Personalized Network-Based Anti-Cancer Therapy
                          Evaluation
  PANPRSnext              Building PRS Models Based on Summary Statistics
                          of GWAs
  PAS                     Polygenic Analysis System (PAS)
  PASSED                  Calculate Power and Sample Size for Two Sample
                          Mean Tests
  PASWR                   Probability and Statistics with R
  PASWR2                  Probability and Statistics with R, Second
                          Edition
  PAutilities             Streamline Physical Activity Research
  PBD                     Protracted Birth-Death Model of Diversification
  PBIBD                   Partially Balanced Incomplete Block Designs
  PBIR                    Estimating the Probability of Being in Response
                          and Related Outcomes
  PBImisc                 A Set of Datasets Used in My Classes or in the
                          Book 'Modele Liniowe i Mieszane w R, Wraz z
                          Przykladami w Analizie Danych'
  PBNPA                   Permutation Based Non-Parametric Analysis of
                          CRISPR Screen Data
  PBSadmb                 ADMB for R Using Scripts or GUI
  PBSddesolve             Solver for Delay Differential Equations
  PBSmapping              Mapping Fisheries Data and Spatial Analysis
                          Tools
  PBSmodelling            GUI Tools Made Easy: Interact with Models and
                          Explore Data
  PBtDesigns              Partially Balanced t-Designs (PBtDesigns)
  PCADSC                  Tools for Principal Component Analysis-Based
                          Data Structure Comparisons
  PCAPAM50                Enhanced 'PAM50' Subtyping of Breast Cancer
  PCAmatchR               Match Cases to Controls Based on Genotype
                          Principal Components
  PCAmixdata              Multivariate Analysis of Mixed Data
  PCBN                    Inference of Pair-Copula Bayesian Networks
  PCBS                    Principal Component BiSulfite
  PCDimension             Finding the Number of Significant Principal
                          Components
  PCFAM                   Computation of Ancestry Scores with Mixed
                          Families and Unrelated Individuals
  PCGII                   Partial Correlation Graph with Information
                          Incorporation
  PCGSE                   Principal Component Gene Set Enrichment
  PCL                     Proximal Causal Learning
  PCLassoReg              Group Regression Models for Risk Protein
                          Complex Identification
  PCMBase                 Simulation and Likelihood Calculation of
                          Phylogenetic Comparative Models
  PCMBaseCpp              Fast Likelihood Calculation for Phylogenetic
                          Comparative Models
  PCMRS                   Model Response Styles in Partial Credit Models
  PCObw                   Bandwidth Selector with Penalized Comparison to
                          Overfitting Criterion
  PCPS                    Principal Coordinates of Phylogenetic Structure
  PCRA                    Companion to Portfolio Construction and Risk
                          Analysis
  PCRedux                 Quantitative Polymerase Chain Reaction (qPCR)
                          Data Mining and Machine Learning Toolkit as
                          Described in Burdukiewicz (2022)
                          <doi:10.21105/Joss.04407>
  PCS                     Calculate the Probability of Correct Selection
                          (PCS)
  PCSinR                  Parallel Constraint Satisfaction Networks in R
  PCovR                   Principal Covariates Regression
  PCpluS                  Piecewise Constant Plus Smooth Regression
  PDE                     Extract Tables and Sentences from PDFs with
                          User Interface
  PDEnaiveBayes           Plausible Naive Bayes Classifier Using PDE
  PDFEstimator            Multivariate Nonparametric Probability Density
                          Estimator
  PDIndex                 Disease Intensity and Progress Curve Indices
                          for Plant Pathology
  PDM                     Photogrammetric Distances Measurer
  PDMIF                   Fits Heterogeneous Panel Data Models
  PDN                     Personalized Disease Network
  PDQutils                PDQ Functions via Gram Charlier, Edgeworth, and
                          Cornish Fisher Approximations
  PDSCE                   Positive Definite Sparse Covariance Estimators
  PDShiny                 'Probability Distribution Shiny'
  PDXpower                Time to Event Outcome in Experimental Designs
                          of Pre-Clinical Studies
  PDtoolkit               Collection of Tools for PD Rating Model
                          Development and Validation
  PEAXAI                  Probabilistic Efficiency Analysis Using
                          Explainable Artificial Intelligence
  PEGroupTesting          Population Proportion Estimation using Group
                          Testing
  PEIMAN2                 Post-Translational Modification Enrichment,
                          Integration, and Matching Analysis
  PEIP                    Geophysical Inverse Theory and Optimization
  PELVIS                  Probabilistic Sex Estimate using Logistic
                          Regression, Based on VISual Traits of the Human
                          Os Coxae
  PEPBVS                  Bayesian Variable Selection using
                          Power-Expected-Posterior Prior
  PERK                    Predicting Environmental Concentration and Risk
  PERMANOVA               Multivariate Analysis of Variance Based on
                          Distances and Permutations
  PERSUADE                Parametric Survival Model Selection for
                          Decision-Analytic Models
  PEkit                   Partition Exchangeability Toolkit
  PEtests                 Power-Enhanced (PE) Tests for High-Dimensional
                          Data
  PFCI                    Penalized Fast Causal Inference for
                          High-Dimensional Structure Learning
  PFIM                    Population Fisher Information Matrix
  PFLR                    Estimating Penalized Functional Linear
                          Regression
  PFW                     Filtering and Processing Data from Project
                          FeederWatch
  PGM2                    Recursive Construction of Nested Resolvable
                          Designs and Associated Uniform Designs
  PGRdup                  Discover Probable Duplicates in Plant Genetic
                          Resources Collections
  PGaGEV                  Power Garima-Generalized Extreme Value
                          Distribution
  PGaovR                  Analysis of Experimental Data using ANOVA and
                          Mean Comparison
  PH1XBAR                 Phase I Shewhart X-Bar Chart
  PHENIX                  Phenotypic Integration Index
  PHENTHAUproc            Phenology Modelling of Thaumetopoea
                          Processionea
  PHEindicatormethods     Common Public Health Statistics and their
                          Confidence Intervals
  PHInfiniteEstimates     Tools for Inference in the Presence of a
                          Monotone Likelihood
  PHSMM                   Penalised Maximum Likelihood Estimation for
                          Hidden Semi-Markov Models
  PHYLOGR                 Functions for Phylogenetically Based
                          Statistical Analyses
  PHclust                 Poisson Hurdle Clustering for Sparse Microbiome
                          Data
  PHeval                  Evaluation of the Proportional Hazards
                          Assumption and Test for Comparing Survival
                          Curves with a Standardized Score Process
  PICBayes                Bayesian Models for Partly Interval-Censored
                          Data
  PIE                     A Partially Interpretable Model with Black-Box
                          Refinement
  PINMA                   Improved Methods for Constructing Prediction
                          Intervals for Network Meta-Analysis
  PINSPlus                Clustering Algorithm for Data Integration and
                          Disease Subtyping
  PINstimation            Estimation of the Probability of Informed
                          Trading
  PJCcalculator           PROs-Joint Contrast (PJC) Calculator
  PJFM                    Variational Inference for High-Dimensional
                          Joint Frailty Model
  PK                      Basic Non-Compartmental Pharmacokinetics
  PKI                     Public Key Infrastucture for R Based on the
                          X.509 Standard
  PKLMtest                Classification Based MCAR Test
  PKNCA                   Perform Pharmacokinetic Non-Compartmental
                          Analysis
  PKPDindex               Optimal PK/PD Index Finder
  PKPDsim                 Tools for Performing
                          Pharmacokinetic-Pharmacodynamic Simulations
  PKbioanalysis           Pharmacokinetic Bioanalysis Experiments Design
                          and Exploration
  PKconverter             The Parameter Converter of the Pharmacokinetic
                          Models
  PL94171                 Tabulate P.L. 94-171 Redistricting Data Summary
                          Files
  PLEXI                   Multiplex Network Analysis
  PLFD                    Portmanteau Local Feature Discrimination for
                          Matrix-Variate Data
  PLIS                    Multiplicity Control using Pooled LIS Statistic
  PLNmodels               Poisson Lognormal Models
  PLORN                   Prediction with Less Overfitting and Robust to
                          Noise
  PLRModels               Statistical Inference in Partial Linear
                          Regression Models
  PLUCR                   Policy Learning Under Constraint
  PLindleyROC             Receiver Operating Characteristic Based on
                          Power Lindley Distribution
  PLmixed                 Estimate (Generalized) Linear Mixed Models with
                          Factor Structures
  PLreg                   Power Logit Regression for Modeling Bounded
                          Data
  PMA                     Penalized Multivariate Analysis
  PMCMR                   Calculate Pairwise Multiple Comparisons of Mean
                          Rank Sums
  PMCMRplus               Calculate Pairwise Multiple Comparisons of Mean
                          Rank Sums Extended
  PMEvapotranspiration    Calculation of the Penman-Monteith
                          Evapotranspiration using Weather Variables
  PMLE4SCR                Pseudo Maximum Likelihood Estimation for
                          Semi-Competing Risks Data
  PMwR                    Portfolio Management with R
  PNADCperiods            Identify Reference Periods in Brazil's PNADC
                          Survey Data
  PNADcIBGE               Downloading, Reading and Analyzing PNADC
                          Microdata
  PNAR                    Poisson Network Autoregressive Models
  PNC                     Phylogenetic Niche Conservatism Analysis for
                          Ecological Communities
  PND.heter.cluster       Estimating the Cluster Specific Treatment
                          Effects in Partially Nested Designs
  PNDSIBGE                Downloading, Reading and Analyzing PNDS
                          Microdata - Package in Development
  PNSIBGE                 Downloading, Reading and Analyzing PNS
                          Microdata
  PNWColors               Color Palettes Inspired by Nature in the US
                          Pacific Northwest
  POCRE                   Penalized Orthogonal-Components Regression
  POD                     Probability of Detection for Qualitative PCR
                          Methods
  POET                    Principal Orthogonal ComplEment Thresholding
                          (POET) Method
  POINT                   Protein Structure Guided Local Test
  POMADE                  Power for Meta-Analysis of Dependent Effects
  POMS                    Phylogenetic Organization of Metagenomic
                          Signals
  POMaSPU                 Adaptive Association Tests for Multiple
                          Phenotypes using Proportional Odds Model
                          (POM-aSPU)
  POPInf                  Assumption-Lean and Data-Adaptive
                          Post-Prediction Inference
  POSSA                   Power Simulation for Sequential Analyses and
                          Multiple Hypotheses
  POSTm                   Phylogeny-Guided OTU-Specific Association Test
                          for Microbiome Data
  POSetR                  Partially Ordered Sets in R
  POT                     Generalized Pareto Distribution and Peaks Over
                          Threshold
  POV                     Partition of Variation Variance Component
                          Analysis Method
  PP                      Person Parameter Estimation
  PPCDT                   An Optimal Subset Selection for Distributed
                          Hypothesis Testing
  PPCI                    Projection Pursuit for Cluster Identification
  PPCSexRx                Prescribe Sub-Symptom Exercise for Adolescent
                          Concussion
  PPMR                    Probabilistic Two Sample Mendelian
                          Randomization
  PPMiss                  Copula-Based Estimator for Long-Range Dependent
                          Processes under Missing Data
  PPQplan                 Process Performance Qualification (PPQ) Plans
                          in Chemistry, Manufacturing and Controls (CMC)
                          Statistical Analysis
  PPRL                    Privacy Preserving Record Linkage
  PPSFS                   Partial Profile Score Feature Selection in
                          High-Dimensional Generalized Linear Interaction
                          Models
  PPTS                    Point Process Time Series
  PPTcirc                 Projected Polya Tree for Circular Data
  PPbigdata               Projection Pursuit for Big Data Based on Data
                          Nuggets
  PPforest                Projection Pursuit Classification Forest
  PPtreeExt               Projection Pursuit Classification Tree
                          Extensions
  PPtreeViz               Projection Pursuit Classification Tree
                          Visualization
  PQA                     Perform the Pearson-Quetelet Analysis on
                          Two-Way Contingency Tables
  PRANA                   Pseudo-Value Regression Approach for Network
                          Analysis (PRANA)
  PRBMSdesigns            Partially Residual Balanced Multi-Session
                          Designs
  PRDA                    Conduct a Prospective or Retrospective Design
                          Analysis
  PRECAST                 Embedding and Clustering with Alignment for
                          Spatial Omics Datasets
  PREPShiny               Interactive Document for Preprocessing the
                          Dataset
  PRIMAL                  Parametric Simplex Method for Sparse Learning
  PRIMEplus               Study Design for Immunotherapy Clinical Trials
  PRISM.forecast          Penalized Regression with Inferred Seasonality
                          Module - Forecasting Unemployment Initial
                          Claims using 'Google Trends' Data
  PRISMA                  Protocol Inspection and State Machine Analysis
  PRISMA2020              Make Interactive 'PRISMA' Flow Diagrams
  PRMethods               D-Hondt, Sainte-Lague, and Modified
                          Sainte-Lague Methods for Seat Allocation
  PRNG                    A Pseudo-Random Number Generator
  PROJ                    Generic Coordinate System Transformations Using
                          'PROJ'
  PROMETHEE               Preference Ranking Organization METHod for
                          Enrichment of Evaluations
  PROSPER                 Simulation of Weed Population Dynamics
  PROreg                  Patient Reported Outcomes Regression Analysis
  PROscorer               Functions to Score Commonly-Used
                          Patient-Reported Outcome (PRO) Measures and
                          Other Psychometric Instruments
  PROscorerTools          Tools to Score Patient-Reported Outcome (PRO)
                          and Other Psychometric Measures
  PROsetta                Linking Patient-Reported Outcomes Measures
  PRP                     Bayesian Prior and Posterior Predictive
                          Replication Assessment
  PRROC                   Precision-Recall and ROC Curves for Weighted
                          and Unweighted Data
  PRTree                  Probabilistic Regression Trees
  PReMiuM                 Dirichlet Process Bayesian Clustering, Profile
                          Regression
  PResiduals              Probability-Scale Residuals and Residual
                          Correlations
  PSAWR                   'Pushshift' API Wrapper for 'Reddit' Submission
                          and Comment Search
  PSAboot                 Bootstrapping for Propensity Score Analysis
  PSAgraphics             Propensity Score Analysis Graphics
  PSCBS                   Analysis of Parent-Specific DNA Copy Numbers
  PSDistr                 Distributions Derived from Normal Distribution
  PSF                     Forecasting of Univariate Time Series Using the
                          Pattern Sequence-Based Forecasting (PSF)
                          Algorithm
  PSGD                    Projected Subset Gradient Descent
  PSGoft                  Modified Lilliefors Goodness-of-Fit Normality
                          Test
  PSIM                    Preference Selection Index Method (PSIM)
  PSIndependenceTest      Independence Tests for Two-Way, Three-Way and
                          Four-Way Contingency Tables
  PSLM2015                Pakistan Social and Living Standards
                          Measurement Survey 2014-15
  PSMatch                 Handling and Managing Peptide Spectrum Matches
  PSPI                    Propensity Score Predictive Inference for
                          Generalizability
  PSPManalysis            Analysis of Physiologically Structured
                          Population Models
  PSRICalc                Plant Stress Response Index Calculator
  PSRICalcSM              Plant Stress Response Index Calculator -
                          Softmax Method
  PSSIM                   Test of Independence & Image Structural
                          Similarity Measure PSSIM
  PSSMCOOL                Features Extracted from Position Specific
                          Scoring Matrix (PSSM)
  PSTR                    Panel Smooth Transition Regression Modelling
  PSW                     Propensity Score Weighting Methods for
                          Dichotomous Treatments
  PScr                    Estimation for the Power Series Cure Rate Model
  PSinference             Inference for Released Plug-in Sampling Single
                          Synthetic Dataset
  PSor                    Semiparametric Principal Stratification
                          Analysis Beyond Monotonicity
  PSpower                 Sample Size and Power for Propensity Score
                          Weighted Estimators
  PSsurvival              Propensity Score Methods for Survival Analysis
  PStrata                 Principal Stratification Analysis in R
  PSweight                Propensity Score Weighting for Causal Inference
                          with Observational Studies and Randomized
                          Trials
  PTAk                    Principal Tensor Analysis on k Modes
  PTE                     Personalized Treatment Evaluator
  PTERP                   PTE and RP for Optimally-Transformed Surrogate
  PTMods                  Managing Post-Translational Modifications in R
  PTSDdiag                Optimize PTSD Diagnostic Criteria
  PTSR                    Positive Time Series Regression
  PTXQC                   Quality Report Generation for MaxQuant and
                          mzTab Results
  PTwins                  Percentile Estimation of Fetal Weight for Twins
                          by Chorionicity
  PUGMM                   Parsimonious Ultrametric Gaussian Mixture
                          Models
  PUMP                    Power Under Multiplicity Project
  PUPAK                   Parameter Estimation, and Plot Visualization of
                          Adsorption Kinetic Models
  PUPMCR                  Image-Based Identification of Color Based on
                          Rayner (1970) Terminology and Known Fungal
                          Pigments
  PUPMSI                  Moisture Sorption Isotherm Modeling Program
  PUlasso                 High-Dimensional Variable Selection with
                          Presence-Only Data
  PVAClone                Population Viability Analysis with Data Cloning
  PVBcorrect              Partial Verification Bias Correction for
                          Diagnostic Accuracy
  PVR                     Phylogenetic Eigenvectors Regression and
                          Phylogentic Signal-Representation Curve
  PWEALL                  Design and Monitoring of Survival Trials
                          Accounting for Complex Situations
  PWEV                    PSO Based Weighted Ensemble Algorithm for
                          Volatility Modelling
  PWEXP                   Piecewise Exponential Distribution Prediction
                          Model
  PWIR                    Provides a Function to Calculate Prize Winner
                          Indices Based on Bibliometric Data
  PaLMr                   Interface for 'Google Pathways Language Model 2
                          (PaLM 2)'
  PaRe                    A Way to Perform Code Review or QA on Other
                          Packages
  PacketLLM               Interactive 'OpenAI' Model Integration in
                          'RStudio'
  Pade                    Padé Approximant Coefficients
  PairViz                 Visualization using Graph Traversal
  PairedData              Paired Data Analysis
  PakPC2017               Pakistan Population Census 2017
  PakPC2023               Pakistan Population Census 2023
  PakPMICS2014Ch          Multiple Indicator Cluster Survey (MICS) 2014
                          Child Questionnaire Data for Punjab, Pakistan
  PakPMICS2014HH          Multiple Indicator Cluster Survey (MICS) 2014
                          Household Questionnaire Data for Punjab,
                          Pakistan
  PakPMICS2014HL          Multiple Indicator Cluster Survey (MICS) 2014
                          Household Listing Questionnaire Data for
                          Punjab, Pakistan
  PakPMICS2014Wm          Multiple Indicator Cluster Survey (MICS) 2014
                          Women Questionnaire Data for Punjab, Pakistan
  PakPMICS2018            Multiple Indicator Cluster Survey (MICS)
                          2017-18 Data for Punjab, Pakistan
  PakPMICS2018bh          Multiple Indicator Cluster Survey (MICS)
                          2017-18 Birth History of Children Questionnaire
                          Data for Punjab, Pakistan
  PakPMICS2018fs          Multiple Indicator Cluster Survey (MICS)
                          2017-18 Children Age 5-17 Questionnaire Data
                          for Punjab, Pakistan
  PakPMICS2018hh          Multiple Indicator Cluster Survey (MICS)
                          2017-18 Household Questionnaire Data for
                          Punjab, Pakistan
  PakPMICS2018mm          Multiple Indicator Cluster Survey (MICS)
                          2017-18 Maternal Mortality Questionnaire Data
                          for Punjab, Pakistan
  PakPMICS2018mn          Multiple Indicator Cluster Survey (MICS)
                          2017-18 Men Questionnaire Data for Punjab,
                          Pakistan
  PamBinaries             Read and Process 'Pamguard' Binary Data
  PanJen                  A Semi-Parametric Test for Specifying
                          Functional Form
  PanelCount              Random Effects and/or Sample Selection Models
                          for Panel Count Data
  PanelMatch              Matching Methods for Causal Inference with
                          Time-Series Cross-Sectional Data
  PanelSelect             Panel Sample Selection Models
  PanelTM                 Two- And Three-Way Dynamic Panel Threshold
                          Regression Model for Change Point Detection
  PantaRhei               Plots Sankey Diagrams
  ParCC                   Parameter Converter and Calculator for Health
                          Technology Assessment
  ParDNAcopy              Parallel implementation of the "segment"
                          function of package "DNAcopy"
  ParallelLogger          Support for Parallel Computation, Logging, and
                          Function Automation
  ParallelTree            Visualizing Multilevel Data with Parallel Tree
                          Plots
  ParamANOVA              Fully Parameterizable ANOVA Tests
  ParamHelpers            Helpers for Parameters in Black-Box
                          Optimization, Tuning and Machine Learning
  Pareto                  The Pareto, Piecewise Pareto and Generalized
                          Pareto Distribution
  ParetoPosStable         Computing, Fitting and Validating the PPS
                          Distribution
  Paris2024Colours        Color Palettes Inspired by Paris 2024 Olympic
                          and Paralympic Games
  ParmOff                 Complex Argument Matching
  PartCensReg             Estimation and Diagnostics for Partially Linear
                          Censored Regression Models Based on
                          Heavy-Tailed Distributions
  PartialNetwork          Estimating Peer Effects Using Partial Network
                          Data
  PartialTL               Partial Transfer Learning for Causal Estimation
  Partiallyoverlapping    Partially Overlapping Samples Tests
  Path.Analysis           Path Coefficient Analysis
  PathwaySpace            Spatial Projection of Network Signals along
                          Geodesic Paths
  PathwayVote             Robust Pathway Enrichment for DNA Methylation
                          Studies Using Ensemble Voting
  PatientGenerator        Generator of Synthetic Patient Data for the
                          OMOP Common Data Model
  PatientLevelPrediction
                          Develop Clinical Prediction Models Using the
                          Common Data Model
  PatientProfiles         Identify Characteristics of Patients in the
                          OMOP Common Data Model
  Patterns                Deciphering Biological Networks with Patterned
                          Heterogeneous Measurements
  PeakError               Compute the Label Error of Peak Calls
  PeakSegDP               Dynamic Programming Algorithm for Peak
                          Detection in ChIP-Seq Data
  PeakSegDisk             Disk-Based Constrained Change-Point Detection
  PeakSegJoint            Joint Peak Detection in Several ChIP-Seq
                          Samples
  PeakSegOptimal          Optimal Segmentation Subject to Up-Down
                          Constraints
  PearsonDS               Pearson Distribution System
  PearsonICA              Independent Component Analysis using Score
                          Functions from the Pearson System
  Pedixplorer             Pedigree Functions
  PeerPerformance         Luck-Corrected Peer Performance Analysis in R
  PenCoxFrail             Regularization in Cox Frailty Models
  PenIC                   Semiparametric Regression Analysis of
                          Interval-Censored Data using Penalized Splines
  PenguinR                A Comprehensive Collection of Penguin Datasets
                          for Statistical Analysis and Experimental
                          Design
  PepMapViz               A Versatile Toolkit for Peptide Mapping,
                          Visualization, and Comparative Exploration
  Peptides                Calculate Indices and Theoretical
                          Physicochemical Properties of Protein Sequences
  PerFit                  Person Fit
  PerMat                  Performance Metrics in Predictive Modeling
  PerRegMod               Fitting Periodic Coefficients Linear Regression
                          Models
  Perc                    Using Percolation and Conductance to Find
                          Information Flow Certainty in a Direct Network
  PerfMeas                Performance Measures for Ranking and
                          Classification Tasks
  PerformanceAnalytics    Econometric Tools for Performance and Risk
                          Analysis
  PeriodicTable           Periodic Table of the Elements
  PermAlgo                Permutational Algorithm to Simulate Survival
                          Data
  PermCor                 Robust Permutation Tests of Correlation
                          Coefficients
  PermutationR            Conduct Permutation Analysis of Variance in R
  PersomicsArray          Automated Persomics Array Image Extraction
  PeruAPIs                Access Peruvian Data via Public APIs and
                          Curated Datasets
  PesticideLoadIndicator
                          Computes Danish Pesticide Load Indicator
  PhaseGMM                Phase-Function Based Estimation and Inference
                          for Linear Errors-in-Variables (EIV) Models
  PhaseType               Inference for Phase-Type Distributions
  PhaseTypeR              General-Purpose Phase-Type Functions
  PheCAP                  High-Throughput Phenotyping with EHR using a
                          Common Automated Pipeline
  PheNorm                 Unsupervised Gold-Standard Label Free
                          Phenotyping Algorithm for EHR Data
  PheVis                  Automatic Phenotyping of Electronic Health
                          Record at Visit Resolution
  PhenoSpectra            Multispectral Data Analysis and Visualization
  Phenotype               A Tool for Phenotypic Data Processing
  PhenotypeR              Assess Study Cohorts Using a Common Data Model
  Phi2rho                 Owen's T Function and Bivariate Normal Integral
  PhilipsHue              R Interface to the Philips Hue API
  PhoneValidator          Client for 'GenderAPI.io' Phone Number
                          Validation and Formatter API
  PhotoGEA                Photosynthetic Gas Exchange Analysis
  PhotosynQ               Connect to PhotosynQ
  PhySortR                A Fast, Flexible Tool for Sorting Phylogenetic
                          Trees
  PhylogeneticEM          Automatic Shift Detection using a Phylogenetic
                          EM
  PhysActBedRest          Marks Periods of 'Bedrest' in Actigraph
                          Accelerometer Data
  PhysicalActivity        Process Accelerometer Data for Physical
                          Activity Measurement
  PhysioIndexR            Physiological and Stress Indices for Crop
                          Evaluation
  PhytoIn                 Vegetation Analysis and Forest Inventory
  PhytosanitaryCalculator
                          Phytosanitary Calculator for Inspection Plans
                          Based on Risks
  PiC                     Pointcloud Interactive Computation
  PieGlyph                Axis Invariant Scatter Pie Plots
  Pijavski                Global Univariate Minimization
  Pinference              Probability Inference for Propositional Logic
  PivotalP                Prediction for Future Data from Mixture
                          Distributions Gamma, Beta, Weibull and Normal
  PlackettLuce            Plackett-Luce Models for Rankings
  Planesmuestra           Functions for Calculating Dodge Romig, MIL STD
                          105E and MIL STD 414 Acceptance Sampling Plan
  PlanetNICFI             Processing of the 'Planet NICFI' Satellite
                          Imagery
  PlasmaMutationDetector
                          Tumor Mutation Detection in Plasma
  PlateVision             Automated qPCR Analysis and Visual Quality
                          Control
  PlatformDesign          Optimal Two-Period Multiarm Platform Design
                          with New Experimental Arms Added During the
                          Trial
  PlayerChart             Generate Pizza Chart: Player Stats 0-100
  PlayerRatings           Dynamic Updating Methods for Player Ratings
                          Estimation
  PlotBivInvGaus          Density Contour Plot for Bivariate Inverse
                          Gaussian Distribution
  PlotContour             Plot Contour Line
  PlotFTIR                Plot FTIR Spectra
  PlotNormTest            Graphical Univariate/Multivariate Assessments
                          for Normality Assumption
  PlotPrjNetworks         Useful Networking Tools for Project Management
  PlotTools               Extended Tools for Continuous Legends, Polygon
                          Manipulation, and Visual Display of Categorical
                          Data
  PnT                     Peak Finder
  PoDBAY                  Vaccine Efficacy Estimation Package
  PoPdesign               Posterior Predictive (PoP) Design for Phase I
                          Clinical Trials
  PoSI                    Valid Post-Selection Inference for Linear LS
                          Regression
  PoSIAdjRSquared         Post-Selection Inference for Adjusted R Squared
  PogromcyDanych          DataCrunchers (PogromcyDanych) is the Massive
                          Online Open Course that Brings R and Statistics
                          to the People
  PoiClaClu               Classification and Clustering of Sequencing
                          Data Based on a Poisson Model
  PointFore               Interpretation of Point Forecasts as
                          State-Dependent Quantiles and Expectiles
  PointedSDMs             Fit Models Derived from Point Processes to
                          Species Distributions using 'inlabru'
  PoisBinNonNor           Data Generation with Poisson, Binary and
                          Continuous Components
  PoisBinOrd              Data Generation with Poisson, Binary and
                          Ordinal Components
  PoisBinOrdNonNor        Generation of Up to Four Different Types of
                          Variables
  PoisBinOrdNor           Data Generation with Poisson, Binary, Ordinal
                          and Normal Components
  PoisNonNor              Simultaneous Generation of Count and Continuous
                          Data
  PoisNor                 Simultaneous Generation of Multivariate Data
                          with Poisson and Normal Marginals
  PoissonBinomial         Efficient Computation of Ordinary and
                          Generalised Poisson Binomial Distributions
  PoissonMultinomial      The Poisson-Multinomial Distribution
  PoissonPCA              Poisson-Noise Corrected PCA
  PolarCAP                Access the Polarization in Comparative
                          Attitudes Project
  PolicyPortfolios        Tools for Managing, Measuring and Visualizing
                          Policy Portfolios
  PolisheR                Interfacing 'NaileR' with 'Shiny'
  Poly4AT                 Access 'INVEKOS' API for Field Polygons
  PolyHaplotyper          Assignment of Haplotypes Based on SNP Dosages
                          in Diploids and Polyploids
  PolyMigR                Analysis of Polyphenol Migration from Packaging
                          Films
  PolyPatEx               Paternity Exclusion in Autopolyploid Species
  PolyTree                Estimate Causal Polytree from Data
  Polychrome              Qualitative Palettes with Many Colors
  PolycrossDesigns        Polycross Designs ("PolycrossDesigns")
  PolynomF                Polynomials in R
  Pomic                   Pattern Oriented Modelling Information
                          Criterion
  PoolBal                 Balancing Central and Marginal Rejection of
                          Pooled p-Values
  PoolDilutionR           Calculate Gross Biogeochemical Flux Rates from
                          Isotope Pool Dilution Data
  PooledCohort            Predicted Risk for CVD using Pooled Cohort
                          Equations, PREVENT Equations, and Other
                          Contemporary CVD Risk Calculators
  PooledMeanGroup         Pooled Mean Group Estimation of Dynamic
                          Heterogenous Panels
  PopComm                 Population-Level Cell-Cell Communication
                          Analysis Tools
  PopED                   Population (and Individual) Optimal
                          Experimental Design
  PopGenHelpR             Streamline Population Genomic and Genetic
                          Analyses
  PopGenReport            A Simple Framework to Analyse Population and
                          Landscape Genetic Data
  PopPsiSeqR              Process and Visualize Evolve & Resequence
                          Experiments
  PopVar                  Genomic Breeding Tools: Genetic Variance
                          Prediction and Cross-Validation
  PopulateR               Create Data Frames for the Micro-Simulation of
                          Human Populations
  PopulationGrowthR       Linear Population Growth Scenarios
  PortalHacienda          Acceder Con R a Los Datos Del Portal De
                          Hacienda
  PortfolioAnalytics      Portfolio Analysis, Including Numerical Methods
                          for Optimization of Portfolios
  PortfolioOptim          Small/Large Sample Portfolio Optimization
  PortfolioTesteR         Test Investment Strategies with English-Like
                          Code
  PosRatioDist            Quotient of Random Variables Conditioned to the
                          Positive Quadrant
  PosiR                   Post-Selection Inference via Simultaneous
                          Confidence Intervals
  PostcodesioR            API Wrapper Around 'Postcodes.io'
  PosteriorBootstrap      Non-Parametric Sampling with Parallel Monte
                          Carlo
  PottsUtils              Utility Functions of the Potts Models
  PowRPriori              Power Analysis via Data Simulation for
                          (Generalized) Linear Mixed Effects Models
  PoweR                   Computation of Power and Level Tables for
                          Hypothesis Tests
  PoweREST                A Bootstrap-Based Power Estimation Tool for
                          Spatial Transcriptomics
  Power2Stage             Power and Sample-Size Distribution of 2-Stage
                          Bioequivalence Studies
  PowerSDI                Calculate Standardised Drought Indices Using
                          NASA POWER Data
  PowerTOST               Power and Sample Size for (Bio)Equivalence
                          Studies
  PrInDT                  Prediction and Interpretation in Decision Trees
                          for Classification and Regression
  PracTools               Designing and Weighting Survey Samples
  PracticalEquiDesign     Design of Practical Equivalence Trials
  PreKnitPostHTMLRender   Pre-Knitting Processing and Post HTML-Rendering
                          Processing
  PreProcess              Basic Functions for Pre-Processing Microarrays
  PreProcessRecordLinkage
                          Preprocessing Record Linkage
  PreProcessing           Various Preprocessing Transformations of
                          Numeric Data Matrices
  PreciseSums             Accurate Floating Point Sums and Products
  PredPsych               Predictive Approaches in Psychology
  PredTest                Preparing Data For, and Calculating the
                          Prediction Test
  PredictABEL             Assessment of Risk Prediction Models
  PredictionR             Prediction for Future Data from any Continuous
                          Distribution
  PredictorSelect         Out-of-Sample Predictability in Predictive
                          Regressions with Many Predictor Candidates
  PresenceAbsence         Presence-Absence Model Evaluation
  PressPurt               Indeterminacy of Networks via Press
                          Perturbations
  PrettyCols              Pretty Colour Palettes
  PriceIndices            Calculating Bilateral and Multilateral Price
                          Indexes
  PriorGen                Generates Prior Distributions for Proportions
  PrivateLR               Differentially Private Regularized Logistic
                          Regression
  ProAE                   PRO-CTCAE Scoring, Analysis, and Graphical
                          Tools
  ProActive               Detect Elevations and Gaps in Mapped Sequencing
                          Read Coverage
  ProDenICA               Product Density Estimation for ICA using Tilted
                          Gaussian Density Estimates
  ProFAST                 Probabilistic Factor Analysis for
                          Spatially-Aware Dimension Reduction
  ProPublicaR             Access Functions for ProPublica's APIs
  ProSGPV                 Penalized Regression with Second-Generation
                          P-Values
  ProSportsDraftData      Professional Sports Draft Data
  ProTrackR               Manipulate and Play 'ProTracker' Modules
  ProTrackR2              Manipulate and Play 'ProTracker' Modules
  ProbBayes               Probability and Bayesian Modeling
  ProbBreed               Probability Theory for Selecting Candidates in
                          Plant Breeding
  ProbMarg                Computing Logit & Probit Predicted
                          Probabilities & Marginal Effects
  ProbSamplingI           Probabilistic Sampling Design and Strategies
  ProbYX                  Inference for the Stress-Strength Model R =
                          P(Y<X)
  ProbeDeveloper          Develop Hybridization Probes
  ProbitSpatial           Probit with Spatial Dependence, SAR, SEM and
                          SARAR Models
  ProcData                Process Data Analysis
  ProcMod                 Informative Procrustean Matrix Correlation
  ProduceR                Concise and Efficient Tools for Everyday
                          Statistical Production
  ProfessR                Grades Setting and Exam Maker
  ProfileGLMM             Bayesian Profile Regression using Generalised
                          Linear Mixed Models
  ProfileLadder           Functional-Based Chain Ladder for Claims
                          Reserving
  ProfileLikelihood       Profile Likelihood for a Parameter in Commonly
                          Used Statistical Models
  ProjectManagement       Management of Deterministic and Stochastic
                          Projects
  ProjectTemplate         Automates the Creation of New Statistical
                          Analysis Projects
  ProjectionBasedClustering
                          Projection Based Clustering
  ProliferativeIndex      Calculates and Analyzes the Proliferative Index
  PrometheeTools          PROMETHEE and GLNF for Ranking and Sorting
                          Problems
  PropCIs                 Various Confidence Interval Methods for
                          Proportions
  PropClust               Propensity Clustering and Decomposition
  PropScrRand             Propensity Score Methods for Assigning
                          Treatment in Randomized Trials
  ProtGenerics            Generic infrastructure for Bioconductor mass
                          spectrometry packages
  ProteinPCA              Principal Component Analysis (PCA) Tool on
                          Protein Expression Data
  ProteoBayes             Bayesian Statistical Tools for Quantitative
                          Proteomics
  ProteoMM                Multi-Dataset Model-based Differential
                          Expression Proteomics Analysis Platform
  ProxReg                 Linear Models for Prediction and Classification
                          using Proximal Operators
  Przewodnik              Datasets and Functions Used in the Book
                          'Przewodnik po Pakiecie R'
  PsiUEngineRL            Homotopy Type Theory Engine for Reinforcement
                          Learning
  Pstat                   Assessing Pst Statistics
  PsyControl              CUSUM Person Fit Statistics
  PsyToolkit              Analysis Tools for 'PsyToolkit'
  PsychWordVec            Word Embedding Research Framework for
                          Psychological Science
  PtProcess               Time Dependent Point Process Modelling
  PubChemR                Interface to the 'PubChem' Database for
                          Chemical Data Retrieval
  PubMatrixR              PubMed Pairwise Co-Occurrence Matrix
                          Construction and Visualization
  PubMedMining            Text-Mining of the 'PubMed' Repository
  PubMedWordcloud         'Pubmed' Word Clouds
  PublicationBias         Sensitivity Analysis for Publication Bias in
                          Meta-Analyses
  PublicationBiasBenchmark
                          Benchmark for Publication Bias Correction
                          Methods
  Publish                 Format Output of Various Routines in a Suitable
                          Way for Reports and Publication
  PulmoDataSets           A Curated Collection of Pulmonary and
                          Respiratory Disease Datasets
  PupilPre                Preprocessing Pupil Size Data
  PupillometryR           A Unified Pipeline for Pupillometry Data
  PurpleAir               Query the 'PurpleAir' Application Programming
                          Interface
  PurpleAirAPI            Historical Data Retrieval from 'PurpleAir'
                          Sensors via API
  Pursuit                 Projection Pursuit
  Pv3Rs                   Estimate the Cause of Recurrent Vivax Malaria
                          using Genetic Data
  PvSTATEM                Reading, Quality Control and Preprocessing of
                          MBA (Multiplex Bead Assay) Data
  PwePred                 Event/Timeline Prediction Model Based on
                          Piecewise Exponential
  PwrGSD                  Power in a Group Sequential Design
  PxWebApiData            PX-Web Data by API
  PytrendsLongitudinalR   Create Longitudinal Google Trends Data
  Q2q                     Interpolating Age-Specific Mortality Rates at
                          All Ages
  Q7                      Types and Features for Object Oriented
                          Programming
  QAEnsemble              Ensemble Quadratic and Affine Invariant Markov
                          Chain Monte Carlo
  QAIG                    Automatic Item Generator for Quantitative
                          Multiple-Choice Items
  QBMS                    Query the Breeding Management System(s)
  QCA                     Qualitative Comparative Analysis
  QCAcluster              Tools for the Analysis of Clustered Data in QCA
  QCEWAS                  Fast and Easy Quality Control of EWAS Results
                          Files
  QCGWAS                  Quality Control of Genome Wide Association
                          Study Results
  QCSIS                   Sure Independence Screening via Quantile
                          Correlation and Composite Quantile Correlation
  QCSimulator             A 5-Qubit Quantum Computing Simulator
  QDComparison            Modern Nonparametric Tools for Two-Sample
                          Quantile and Distribution Comparisons
  QF                      Density, Cumulative and Quantile Functions of
                          Quadratic Forms
  QFASA                   Quantitative Fatty Acid Signature Analysis
  QFRM                    Pricing of Vanilla and Exotic Option Contracts
  QFeatures               Quantitative features for mass spectrometry
                          data
  QGA                     Quantum Genetic Algorithm
  QGameTheory             Quantum Game Theory Simulator
  QGglmm                  Estimate Quantitative Genetics Parameters from
                          Generalised Linear Mixed Models
  QHOT                    QTL Hotspot Detection
  QHScrnomo               Construct Nomograms for Competing Risks
                          Regression Models
  QI                      Quantity-Intensity Relationship of Soil
                          Potassium
  QQreflimits             Reference Limits using QQ Methodology
  QR                      QR Factorization without Pivoting
  QR.break                Structural Breaks in Quantile Regression
  QRAGadget               A 'Shiny' Gadget for Interactive 'QRA'
                          Visualizations
  QRISK3                  10-Year Cardiovascular Disease Risk Calculator
                          (QRISK3 2017)
  QRIpkg                  Quantile Regression Index Score
  QRM                     Provides R-Language Code to Examine
                          Quantitative Risk Management Concepts
  QRank                   A Novel Quantile Regression Approach for eQTL
                          Discovery
  QSARdata                Quantitative Structure Activity Relationship
                          (QSAR) Data Sets
  QSutils                 Quasispecies Diversity
  QTE.RD                  Quantile Treatment Effects under the Regression
                          Discontinuity Design
  QTL.gCIMapping          QTL Genome-Wide Composite Interval Mapping
  QTL.gCIMapping.GUI      QTL Genome-Wide Composite Interval Mapping with
                          Graphical User Interface
  QTLEMM                  QTL EM Algorithm Mapping and Hotspots Detection
  QTLRel                  Tools for Mapping of Quantitative Traits of
                          Genetically Related Individuals and Calculating
                          Identity Coefficients from Pedigrees
  QUALYPSO                Partitioning Uncertainty Components of an
                          Incomplete Ensemble of Climate Projections
  QWDAP                   Quantum Walk-Based Data Analysis and Prediction
  QZ                      Generalized Eigenvalues and QZ Decomposition
  Qapprox                 Approximation to the Survival Functions of
                          Quadratic Forms of Gaussian Variables
  Qest                    Quantile-Based Estimator
  Qindex                  Continuous and Dichotomized Index Predictors
                          Based on Distribution Quantiles
  Qindex.data             Data for Package 'Qindex'
  QoLMiss                 Scales Score Calculation from Quality of Life
                          Data
  Qploidy                 Estimation of Ploidy and Detection of
                          Aneuploidy Using Genotyping Data
  QregBB                  Block Bootstrap Methods for Quantile Regression
                          in Time Series
  QsRutils                R Functions Useful for Community Ecology
  Qtools                  Utilities for Quantiles
  QuClu                   Quantile-Based Clustering Algorithms
  QuESTr                  Constructing Quantitative Environment Sensor
                          using Transcriptomes
  QuICSeedR               Analyze Data for Fluorophore-Assisted Seed
                          Amplification Assays
  QuadRoot                Quadratic Root for any Quadratic Equation
  QuadratiK               Collection of Methods Constructed using
                          Kernel-Based Quadratic Distances
  QualityMeasure          Methods for Analyzing Quality Measure
                          Performance
  QuanDA                  Quantile-Based Discriminant Analysis for
                          High-Dimensional Imbalanced Classification
  QuantBondCurves         Calculates Bond Values and Interest Rate Curves
                          for Finance
  QuantPsyc               Quantitative Psychology Tools
  QuantRegGLasso          Adaptively Weighted Group Lasso for
                          Semiparametric Quantile Regression Models
  QuantileGH              Quantile Least Mahalanobis Distance Estimator
                          for Tukey g-&-h Mixture
  QuantileNPCI            Nonparametric Confidence Intervals for
                          Quantiles
  QuantileOnQuantile      Quantile-on-Quantile Regression Analysis
  QuantilePeer            Quantile Peer Effect Models
  Quartet                 Comparison of Phylogenetic Trees Using Quartet
                          and Split Measures
  QuickExplore            Interactive Dataset Explorer for 'R' and 'SAS'
                          and Other Data Formats
  QuickJSR                Interface for the 'QuickJS-NG' Lightweight
                          'JavaScript' Engine
  QurvE                   Robust and User-Friendly Analysis of Growth and
                          Fluorescence Curves
  Qval                    The Q-Matrix Validation Methods Framework
  R.AlphA.Home            Feel at Home using R, Thanks to Shortcuts
                          Functions Making it Simple
  R.ComDim                Common Dimensions (ComDim) Multi-Block Analysis
  R.cache                 Fast and Light-Weight Caching (Memoization) of
                          Objects and Results to Speed Up Computations
  R.devices               Unified Handling of Graphics Devices
  R.filesets              Easy Handling of and Access to Files Organized
                          in Structured Directories
  R.huge                  Methods for Accessing Huge Amounts of Data
                          [deprecated]
  R.matlab                Read and Write MAT Files and Call MATLAB from
                          Within R
  R.methodsS3             S3 Methods Simplified
  R.oo                    R Object-Oriented Programming with or without
                          References
  R.rsp                   Dynamic Generation of Scientific Reports
  R.temis                 Integrated Text Mining Solution
  R.utils                 Various Programming Utilities
  R0                      Estimation of R0 and Real-Time Reproduction
                          Number from Epidemics
  R1magic                 Compressive Sampling: Sparse Signal Recovery
                          Utilities
  R2Addhaz                R2 Measure of Explained Variation under the
                          Additive Hazards Model
  R2BEAT                  Multistage Sampling Allocation and Sample
                          Selection
  R2BayesX                Estimate Structured Additive Regression Models
                          with 'BayesX'
  R2D2ordinal             Implements Pseudo-R2D2 Prior for Ordinal
                          Regression
  R2DT                    Translation of Base R-Like Functions for
                          'data.table' Objects
  R2HTML                  HTML Exportation for R Objects
  R2MLwiN                 Running 'MLwiN' from Within R
  R2OpenBUGS              Running OpenBUGS from R
  R2ROC                   AUC Statistics
  R2WinBUGS               Running 'WinBUGS' and 'OpenBUGS' from 'R' /
                          'S-PLUS'
  R2admb                  'ADMB' to R Interface Functions
  R2jags                  Using R to Run 'JAGS'
  R2sample                Various Methods for the Two Sample Problem
  R2ucare                 Goodness-of-Fit Tests for Capture-Recapture
                          Models
  R3port                  Report Functions to Create HTML and PDF Files
  R4GoodPersonalFinances
                          Make Optimal Financial Decisions
  R4HCR                   R for Health Care Research
  R4RNA                   An R package for RNA visualization and analysis
  R6                      Encapsulated Classes with Reference Semantics
  R62S3                   Automatic Method Generation from R6
  R6DS                    R6 Reference Class Based Data Structures
  R6P                     Design Patterns in R
  R6causal                R6 Class for Structural Causal Models
  RABR                    Simulations for Response Adaptive Block
                          Randomization Design
  RAC                     R Package for Aqua Culture
  RADanalysis             Normalization and Analysis of Rank Abundance
                          Distributions
  RADstackshelpR          Optimize the De Novo Stacks Pipeline via R
  RAFS                    Robust Aggregative Feature Selection
  RAGFlowChainR           Retrieval-Augmented Generation (RAG) Workflows
                          in R with Local and Web Search
  RAINBOWR                Genome-Wide Association Study with SNP-Set
                          Methods
  RALSA                   R Analyzer for Large-Scale Assessments
  RAMP                    Regularized Generalized Linear Models with
                          Interaction Effects
  RAMpath                 Structural Equation Modeling Using the
                          Reticular Action Model (RAM) Notation
  RANKS                   Ranking of Nodes with Kernelized Score
                          Functions
  RANN                    Fast Nearest Neighbour Search (Wraps ANN
                          Library) Using L2 Metric
  RANSAC                  Robust Model Fitting Using the RANSAC Algorithm
  RAP                     Reversal Association Pattern Analysis for
                          Categorical Data
  RAPTOR                  Row and Position Tracheid Organizer
  RAQSAPI                 A Simple Interface to the US EPA Air Quality
                          System Data Mart API
  RARfreq                 Response Adaptive Randomization with
                          'Frequentist' Approaches
  RARtrials               Response-Adaptive Randomization in Clinical
                          Trials
  RAT                     Research Assessment Tools
  RATest                  Randomization Tests
  RAdwords                Loading Google Adwords Data into R
  RApiDatetime            R API for 'Date' and 'Datetime'
  RApiSerialize           R API Serialization
  RAppArmor               Bindings to AppArmor and Security Related Linux
                          Tools
  RAthena                 Connect to 'AWS Athena' using 'Boto3' ('DBI'
                          Interface)
  RBBR                    Regression-Based Boolean Rule Inference
  RBE3                    Estimation and Additional Tools for Quantile
                          Generalized Beta Regression Model
  RBF                     Robust Backfitting
  RBGL                    An interface to the BOOST graph library
  RBNZ                    Download Data from the Reserve Bank of New
                          Zealand Website
  RBPcurve                The Residual-Based Predictiveness Curve
  RBaM                    Bayesian Modeling: Estimate a Computer Model
                          and Make Uncertain Predictions
  RBaseX                  'BaseX' Client
  RBesT                   R Bayesian Evidence Synthesis Tools
  RBtest                  Regression-Based Approach for Testing the Type
                          of Missing Data
  RCA                     Relational Class Analysis
  RCAL                    Regularized Calibrated Estimation
  RCALI                   Calculation of the Integrated Flow of Particles
                          Between Polygons
  RCBR                    Random Coefficient Binary Response Estimation
  RCCPCA                  "Retained Component Criterion for Principal
                          Component Analysis"
  RCEIM                   R Cross Entropy Inspired Method for
                          Optimization
  RCGLS                   Download and Open Data Provided by the
                          Copernicus Global Land Service
  RCLabels                Manipulate Matrix Row and Column Labels with
                          Ease
  RCMinification          Random Coefficient Minification Time Series
                          Models
  RCMsize                 Sample Size Calculation in Reversible Catalytic
                          Models
  RCNA                    Robust Copy Number Alteration Detection (RCNA)
  RCPA                    Consensus Pathway Analysis
  RCPA3                   Data and Functions for R Companion to Political
                          Analysis 3rd Ed
  RCRnorm                 An Integrated Regression Model for Normalizing
                          'NanoString nCounter' Data
  RCSF                    Airborne LiDAR Filtering Method Based on Cloth
                          Simulation
  RCT                     Assign Treatments, Power Calculations,
                          Balances, Impact Evaluation of Experiments
  RCT2                    Designing and Analyzing Two-Stage Randomized
                          Experiments
  RCTRecruit              Non-Parametric Recruitment Prediction for
                          Randomized Clinical Trials
  RCTS                    Clustering Time Series While Resisting Outliers
  RCTrep                  Validation of Estimates of Treatment Effects in
                          Observational Data
  RCarb                   Dose Rate Modelling of Carbonate-Rich Samples
  RCaucTile               Tile Grid Maps for East Caucasian Languages
  RChASM                  Detection of Chromosomal Aneuploidies in
                          Ancient DNA Studies
  RChest                  Locating Distributional Changes in Highly
                          Dependent Time Series
  RCircos                 Circos 2D Track Plot
  RClickhouse             'Yandex Clickhouse' Interface for R with Basic
                          'dplyr' Support
  RClimacell              R Wrapper for the 'Climacell' API
  RCognito                A Simplified Interface for 'Amazon Cognito'
  RColetum                Access your Coletum's Data from API
  RColorBrewer            ColorBrewer Palettes
  RColorConesa            Conesa Colors Palette
  RConics                 Computations on Conics
  RCriteo                 Loading Criteo Data into R
  RCtest                  Reality Check and Predictive Ability Tests for
                          Forecast Evaluation
  RCurl                   General Network (HTTP/FTP/...) Client Interface
                          for R
  RCy3                    Functions to Access and Control Cytoscape
  RCytoGPS                Using Cytogenetics Data in R
  RCzechia                Spatial Objects of the Czech Republic
  RDHonest                Honest Inference in Regression Discontinuity
                          Designs
  RDM                     Quantify Dependence using Rearranged Dependence
                          Measures
  RDML                    Importing Real-Time Thermo Cycler (qPCR) Data
                          from RDML Format Files
  RDP                     The Ramer-Douglas-Peucker Algorithm
  RDRToolbox              A package for nonlinear dimension reduction
                          with Isomap and LLE.
  RDS                     Respondent-Driven Sampling
  RDSsamplesize           RDS Sample Size Estimation and Power
                          Calculation
  RDStreeboot             RDS Tree Bootstrap Method
  RDieHarder              R Interface to the 'DieHarder' RNG Test Suite
  RDnp                    Robust Test for Complete Independence in
                          High-Dimensions
  RDota2                  An R Steam API Client for Valve's Dota2
  REAT                    Regional Economic Analysis Toolbox
  REBayes                 Empirical Bayes Estimation and Inference
  RECA                    Relevant Component Analysis for Supervised
                          Distance Metric Learning
  REDCapCAST              REDCap Metadata Casting and Castellated Data
                          Handling
  REDCapDM                'REDCap' Data Management
  REDCapExporter          Automated Construction of R Data Packages from
                          REDCap Projects
  REDCapR                 Interaction Between R and REDCap
  REDCapSync              Encapsulated 'REDCap' Projects for Synchronized
                          Data Pipelines
  REDCapTidieR            Extract 'REDCap' Databases into Tidy 'Tibble's
  REDI                    Robust Exponential Decreasing Index
  REEMtree                Regression Trees with Random Effects for
                          Longitudinal (Panel) Data
  REFA                    Robust Exponential Factor Analysis
  REFT                    Root Exudate Feature Toolkit
  REMLA                   Robust Expectation-Maximization Estimation for
                          Latent Variable Models
  REMixed                 Regularized Estimation in Mixed Effects Model
  REN                     Regularization Ensemble for Robust Portfolio
                          Optimization
  REPLesentR              Presentations in the REPL
  REPPlab                 R Interface to 'EPP-Lab', a Java Program for
                          Exploratory Projection Pursuit
  REPPlabShiny            'REPPlab' via a Shiny Application
  REPS                    Hedonic and Multilateral Index Methods for Real
                          Estate Price Statistics
  REQS                    R/EQS Interface
  RESET                   Reconstruction Set Test
  RESI                    Robust Effect Size Index (RESI) Estimation
  RESIDE                  Rapid Easy Synthesis to Inform Data Extraction
  RESS                    Integrates R and Essentia
  RESTK                   An Implementation of the RESTK Algorithm
  REXoplanets             Creates Interface with NASA 'Exoplanets Archive
                          API'
  REdaS                   Companion Package to the Book 'R: Einführung
                          durch angewandte Statistik'
  REddyProc               Post Processing of (Half-)Hourly
                          Eddy-Covariance Measurements
  REddyProcNCDF           Reading Data from NetCDF Files for 'REddyProc'
  REffectivePred          Pandemic Prediction Model in an SIRS Framework
  REndo                   Fitting Linear Models with Endogenous
                          Regressors using Latent Instrumental Variables
  RFAE                    Autoencoding Random Forests
  RFIF                    Fast Iterative Filtering (FIF) with Portable
                          FFT Backend
  RFLPtools               Tools to Analyse RFLP Data
  RFOC                    Graphics for Spherical Distributions and
                          Earthquake Focal Mechanisms
  RFPM                    Floating Percentile Model
  RFclust                 Random Forest Cluster Analysis
  RFishBC                 Back-Calculation of Fish Length
  RFlocalfdr              Significance Level for Random Forest Impurity
                          Importance Scores
  RFlocalfdr.data         Data for the Vignette and Examples in
                          'RFlocalfdr'
  RFmerge                 Merging of Satellite Datasets with Ground
                          Observations using Random Forests
  RFmstate                Random Forest-Based Multistate Survival
                          Analysis
  RFormatter              R Source Code Formatter
  RFplus                  Machine Learning for Merging Satellite and
                          Ground Precipitation Data
  RGAN                    Generative Adversarial Nets (GAN) in R
  RGAP                    Production Function Output Gap Estimation
  RGBM                    LS-TreeBoost and LAD-TreeBoost for Gene
                          Regulatory Network Reconstruction
  RGCCA                   Regularized and Sparse Generalized Canonical
                          Correlation Analysis for Multiblock Data
  RGCxGC                  Preprocessing and Multivariate Analysis of
                          Bidimensional Gas Chromatography Data
  RGE                     Response from Genotype to Environment
  RGENERATE               Tools to Generate Vector Time Series
  RGENERATEPREC           Tools to Generate Daily-Precipitation Time
                          Series
  RGF                     Regularized Greedy Forest
  RGIFT                   Create Quizzes in GIFT Format
  RGMM                    Robust Mixture Model
  RGN                     Robust-Gauss Newton (RGN) Optimization of
                          Sum-of-Squares Objective Function
  RGenData                Generates Multivariate Nonnormal Data and
                          Determines How Many Factors to Retain
  RGenetics               R packages for genetics research
  RGeode                  Geometric Density Estimation
  RGoogleAnalyticsPremium
                          Unsampled Data in R for Google Analytics
                          Premium Accounts
  RGoogleFit              R Interface to Google Fit API
  RGraphSpace             A Lightweight Interface Between 'igraph' and
                          'ggplot2' Graphics
  RGraphics               Data and Functions from the Book R Graphics,
                          Third Edition
  RGreenplum              Interface to 'Greenplum' Database
  RGremlinsConjoint       Estimate the "Gremlins in the Data" Model for
                          Conjoint Studies
  RH2                     DBI/RJDBC Interface to H2 Database
  RHC                     Rangeland Health and Condition
  RHMS                    Hydrologic Modelling System for R Users
  RHPCBenchmark           Benchmarks for High-Performance Computing
                          Environments
  RHRT                    Heart Rate Turbulence Analysis
  RHRV                    Heart Rate Variability Analysis of ECG Data
  RHSDB                   Ryan-Holm Step-Down Bonferroni or Sidak
                          Procedure
  RHawkes                 Renewal Hawkes Process
  RHclust                 Vector in Partition
  RHybridFinder           Identification of Hybrid Peptides in
                          Immunopeptidomic Analyses
  RI2by2                  Randomization Inference for Treatment Effects
                          on a Binary Outcome
  RIA                     Radiomics Image Analysis Toolbox for Medial
                          Images
  RIFS                    Random Iterated Function System
  RISCA                   Causal Inference and Prediction in Cohort-Based
                          Analyses
  RISmed                  Download Content from NCBI Databases
  RITCH                   Parser for the ITCH Protocol
  RIbench                 Benchmark Suite for Indirect Methods for RI
                          Estimation
  RIdeogram               Drawing SVG Graphics to Visualize and Map
                          Genome-Wide Data on Idiograms
  RImageJROI              Read and Write 'ImageJ' Region of Interest
                          (ROI) Files
  RImagePalette           Extract the Colors from Images
  RImpact                 Calculates Measures of Scholarly Impact
  RInSp                   R Individual Specialization
  RInside                 C++ Classes to Embed R in C++ (and C)
                          Applications
  RItools                 Randomization Inference Tools
  RJDBC                   Provides Access to Databases Through the JDBC
                          Interface
  RJDemetra               Interface to 'JDemetra+' Seasonal Adjustment
                          Software
  RJSDMX                  R Interface to SDMX Web Services
  RJSONIO                 Serialize R Objects to JSON
  RJSplot                 Interactive Graphs with R
  RJafroc                 Artificial Intelligence Systems and Observer
                          Performance
  RJalaliDate             Handling Jalali Date (Persian / Solar Hijri)
  RKEA                    R/KEA Interface
  RKEAjars                R/KEA Interface Jars
  RKEELdata               Datasets from 'KEEL' for it Use in 'RKEEL'
  RKUM                    Robust Kernel Unsupervised Methods
  RKaggle                 'Kaggle' Dataset Downloader 'API'
  RKelly                  Translate Odds and Probabilities
  RKorAPClient            'KorAP' Web Service Client Package
  RLRsim                  Exact (Restricted) Likelihood Ratio Tests for
                          Mixed and Additive Models
  RLT                     Reinforcement Learning Trees
  RLeafAngle              Estimates, Plots and Evaluates Leaf Angle
                          Distribution Functions, Calculates Extinction
                          Coefficients
  RLescalation            Optimal Dose Escalation Using Deep
                          Reinforcement Learning
  RLogicalOps             Process Logical Operations
  RLoptimal               Optimal Adaptive Allocation Using Deep
                          Reinforcement Learning
  RLumCarlo               Monte-Carlo Methods for Simulating Luminescence
                          Phenomena
  RLumModel               Solving Ordinary Differential Equations to
                          Understand Luminescence
  RLumShiny               'Shiny' Applications for the R Package
                          'Luminescence'
  RM.weights              Weighted Rasch Modeling and Extensions using
                          Conditional Maximum Likelihood
  RM2006                  RiskMetrics 2006 Methodology
  RMAT                    Random Matrix Analysis Toolkit
  RMAWGEN                 Multi-Site Auto-Regressive Weather GENerator
  RMCC                    Airborne LiDAR Filtering Method Based on
                          Multiscale Curvature
  RMCDA                   Multi-Criteria Decision Analysis
  RMCLab                  Lab for Matrix Completion and Imputation of
                          Discrete Rating Data
  RMFM                    Robust Matrix Factor Model
  RMKdiscrete             Sundry Discrete Probability Distributions
  RMLPCA                  Maximum Likelihood Principal Component Analysis
  RMM                     Revenue Management Modeling
  RMOA                    Connect R with MOA for Massive Online Analysis
  RMOAjars                External jars Required for Package RMOA
  RMOPI                   Risk Management and Optimization for Portfolio
                          Investment
  RMSD                    Refined Modified Stahel-Donoho Estimators for
                          Outlier Detection
  RMSDp                   Refined Modified Stahel-Donoho (MSD) Estimators
                          for Outlier Detection (Parallel Version)
  RMSNumpress             'Rcpp' Bindings to Native C++ Implementation of
                          MS Numpress
  RMSS                    Robust Multi-Model Subset Selection
  RMSTpowerBoost          Power and Sample Size for Restricted Mean
                          Survival Time Based Clinical Trials
  RMT4DS                  Computation of Random Matrix Models
  RMTL                    Regularized Multi-Task Learning
  RMThreshold             Signal-Noise Separation in Random Matrices by
                          using Eigenvalue Spectrum Analysis
  RMTstat                 Distributions, Statistics and Tests Derived
                          from Random Matrix Theory
  RMVL                    Mappable Vector Library for Handling Large
                          Datasets
  RMX                     Rasch Models -- eXtensions
  RMaCzek                 Czekanowski's Diagrams
  RMallow                 Fit Multi-Modal Mallows' Models to Ranking Data
  RMariaDB                Database Interface and MariaDB Driver
  RMark                   R Code for Mark Analysis
  RMeDPower2              Design and Modeling for Repeated Measures
                          Studies
  RMediation              Mediation Analysis Confidence Intervals
  RMixpanel               API for Mixpanel
  RMixtComp               Mixture Models with Heterogeneous and
                          (Partially) Missing Data
  RMixtCompIO             Minimal Interface of the C++ 'MixtComp' Library
                          for Mixture Models with Heterogeneous and
                          (Partially) Missing Data
  RMixtCompUtilities      Utility Functions for 'MixtComp' Outputs
  RMySQL                  Database Interface and 'MySQL' Driver for R
  RNASeqPower             Sample size for RNAseq studies
  RNAmf                   Recursive Non-Additive Emulator for
                          Multi-Fidelity Data
  RNAseqNet               Log-Linear Poisson Graphical Model with
                          Hot-Deck Multiple Imputation
  RNAseqQC                Quality Control for RNA-Seq Data
  RNCEP                   Obtain, Organize, and Visualize NCEP Weather
                          Data
  RND                     Risk Neutral Density Extraction Package
  RNGforGPD               Random Number Generation for Generalized
                          Poisson Distribution
  RNOmni                  Rank Normal Transformation Omnibus Test
  RNeXML                  Semantically Rich I/O for the 'NeXML' Format
  RNentropy               Entropy Based Method for the Detection of
                          Significant Variation in Gene Expression Data
  RNetCDF                 Interface to 'NetCDF' Datasets
  RNetLogo                Provides an Interface to the Agent-Based
                          Modelling Platform 'NetLogo'
  RNewsflow               Tools for Comparing Text Messages Across Time
                          and Media
  RNifti                  Fast R and C++ Access to NIfTI Images
  RNiftyReg               Image Registration Using the 'NiftyReg' Library
  ROAuth                  R Interface For OAuth
  ROBOSRMSMOTE            Robust Oversampling with RM-SMOTE for
                          Imbalanced Classification
  ROCFTP.MMS              Perfect Sampling
  ROCModels               ROC Models and AUC Estimation
  ROCR                    Visualizing the Performance of Scoring
                          Classifiers
  ROCS                    Receiver Operating Characteristics Surface
  ROCSI                   Receiver Operating Characteristic Based
                          Signature Identification
  ROCaggregator           Aggregate Multiple ROC Curves into One Global
                          ROC
  ROCit                   Performance Assessment of Binary Classifier
                          with Visualization
  ROCket                  Simple and Fast ROC Curves
  ROCnGO                  Fast Analysis of ROC Curves
  ROCnReg                 ROC Curve Inference with and without Covariates
  ROCpsych                Compute and Compare Diagnostic Test Statistics
                          Across Groups
  ROCsurvcomp             ROC-Based Methods for Comparing Survival
                          Distributions with Right, Left, and Doubly
                          Censored Data
  RODBC                   ODBC Database Access
  RODBCDBI                Provides Access to Databases Through the ODBC
                          Interface
  ROI                     R Optimization Infrastructure
  ROI.format.cbf          Conic Benchmark Format (CBF) Plugin for the R
                          Optimization Infrastructure
  ROI.models.globalOptTests
                          'ROI' Optimization Problems Based on
                          'globalOptTests'
  ROI.models.miplib       'ROI' Access to 'MIPLIB' 2010 Benchmark
                          Instances
  ROI.models.netlib       'ROI' Optimization Problems Based on
                          'NETLIB-LP'
  ROI.plugin.alabama      'alabama' Plug-in for the 'R' Optimization
                          Infrastructure
  ROI.plugin.clarabel     'clarabel' Plug-in for the 'R' Optimization
                          Infrastructure
  ROI.plugin.deoptim      'DEoptim' and 'DEoptimR' Plugin for the 'R'
                          Optimization Interface
  ROI.plugin.ecos         'ECOS' Plugin for the 'R' Optimization
                          Infrastructure
  ROI.plugin.glpk         'ROI' Plug-in 'GLPK'
  ROI.plugin.highs        'HiGHS' Plugin for the 'R' Optimization
                          Infrastructure
  ROI.plugin.ipop         'ipop' Plug-in for the 'R' Optimization
                          Interface
  ROI.plugin.lpsolve      'lp_solve' Plugin for the 'R' Optimization
                          Infrastructure
  ROI.plugin.msbinlp      'Multi-Solution' Binary Linear Problem Plug-in
                          for the 'R' Optimization Interface
  ROI.plugin.neos         'NEOS' Plug-in for the 'R' Optimization
                          Interface
  ROI.plugin.nloptr       'nloptr' Plug-in for the 'R' Optimization
                          Infrastructure
  ROI.plugin.optimx       'optimx' Plug-in for the 'R' Optimization
                          Infrastructure
  ROI.plugin.osqp         'osqp' Plugin for the 'R' Optimization
                          Infrastructure
  ROI.plugin.qpoases      'qpOASES' Plugin for the 'R' Optimization
                          Infrastructure
  ROI.plugin.quadprog     'quadprog' Plug-in for the 'R' Optimization
                          Infrastructure
  ROI.plugin.scs          'SCS' Plug-in for the 'R' Optimization
                          Infrastructure
  ROI.plugin.symphony     'SYMPHONY' Plug-in for the 'R' Optimization
                          Interface
  ROKET                   Optimal Transport-Based Kernel Regression
  ROMDB                   Get 'OMDB' API Multiple Information
  ROOPSD                  R Object Oriented Programming for Statistical
                          Distribution
  ROOT                    Rashomon Set of Optimal Trees
  ROSE                    Random Over-Sampling Examples
  ROTS                    Reproducibility-Optimized Test Statistic
  ROlogit                 Fit Rank-Ordered Logit (RO-Logit) Model
  ROntoTools              R Onto-Tools suite
  ROpenCVLite             Helper Package for Installing 'OpenCV'
  ROpenDota               Access OpenDota Services in R
  ROpenFIGI               R Interface to OpenFIGI
  ROpenWeatherMap         R Interface to OpenWeatherMap API
  ROptEst                 Optimally Robust Estimation
  ROptSpace               Matrix Reconstruction from a Few Entries
  ROptimus                A Parallel General-Purpose Adaptive
                          Optimisation Engine
  RPDTest                 A New Type of Test Statistic and Method for
                          Multinomial Goodness-of-Fit Test
  RPEGLMEN                Gamma and Exponential Generalized Linear Models
                          with Elastic Net Penalty
  RPEIF                   Computation and Plots of Influence Functions
                          for Risk and Performance Measures
  RPESE                   Estimates of Standard Errors for Risk and
                          Performance Measures
  RPEXE.RPEXT             Reduced Piecewise Exponential Estimate/Test
                          Software
  RPEnsemble              Random Projection Ensemble Classification
  RPIV                    Residual Prediction Tests for
                          Well-Specification of Instrumental Variable
                          Models
  RPMG                    Graphical User Interface (GUI) for Interactive
                          R Analysis Sessions
  RPMM                    Recursively Partitioned Mixture Model
  RPPASPACE               Reverse-Phase Protein Array Super Position and
                          Concentration Evaluation
  RPPanalyzer             Reads, Annotates, and Normalizes Reverse Phase
                          Protein Array Data
  RPatternJoin            String Similarity Joins for Hamming and
                          Levenshtein Distances
  RPesto                  Phylogenetic Estimation of Shifts in the Tempo
                          of Origination
  RPhosFate               Soil and Chemical Substance Emission and
                          Transport Model
  RPointCloud             Visualizing Topological Loops and Voids
  RPostgreSQL             R Interface to the 'PostgreSQL' Database System
  RPostgres               C++ Interface to PostgreSQL
  RPregression            A Simple Regression and Plotting Tool
  RPresto                 DBI Connector to Presto
  RProbSup                Calculates Probability of Superiority
  RProtoBuf               R Interface to the 'Protocol Buffers' 'API'
                          (Version 2 or 3)
  RProtoBufLib            C++ headers and static libraries of Protocol
                          buffers
  RPscoring               Relative Placement Algorithm
  RPtests                 Goodness of Fit Tests for High-Dimensional
                          Linear Regression Models
  RPublica                ProPublica API Client
  RPushbullet             R Interface to the Pushbullet Messaging Service
  RPyGeo                  ArcGIS Geoprocessing via Python
  RQEntangle              Quantum Entanglement of Bipartite System
  RQdeltaCT               Relative Quantification of Gene Expression
                          using Delta Ct Methods
  RQuantLib               R Interface to the 'QuantLib' Library
  RRBoost                 A Robust Boosting Algorithm
  RRF                     Regularized Random Forest
  RRI                     Residual Randomization Inference for Regression
                          Models
  RRMLRfMC                Reduced-Rank Multinomial Logistic Regression
                          for Markov Chains
  RRNA                    Secondary Structure Plotting for RNA
  RRPP                    Linear Model Evaluation with Randomized
                          Residuals in a Permutation Procedure
  RRRR                    Online Robust Reduced-Rank Regression
                          Estimation
  RRTCS                   Randomized Response Techniques for Complex
                          Surveys
  RRgeo                   Species Distribution Modelling for Rare Species
  RRmorph                 3D Morphological Analyses with 'RRphylo'
  RRphylo                 Phylogenetic Ridge Regression Methods for
                          Comparative Studies
  RRreg                   Correlation and Regression Analyses for
                          Randomized Response Data
  RSA                     Response Surface Analysis
  RSADBE                  Data related to the book "R Statistical
                          Application Development by Example"
  RSAGA                   SAGA Geoprocessing and Terrain Analysis
  RSAtools                Advanced Response Surface Analysis
  RSBJson                 Handle R Requests from R Service Bus
                          Applications with JSON Payloads
  RSC                     Robust and Sparse Correlation Matrix
  RSCAT                   Shadow-Test Approach to Computerized Adaptive
                          Testing
  RSD                     Compares Random Distributions using Stochastic
                          Dominance
  RSDA                    R to Symbolic Data Analysis
  RSDC                    Regime-Switching Dynamic Correlation Models
  RSDK                    Sudoku with R
  RSE                     Number of Newly Discovered Rare Species
                          Estimation
  RSEIS                   Seismic Time Series Analysis Tools
  RSKC                    Robust Sparse K-Means
  RSNNS                   Neural Networks using the Stuttgart Neural
                          Network Simulator (SNNS)
  RSP                     'shiny' Applications for Statistical and
                          Psychometric Analysis
  RSQL                    Database Agnostic Package to Generate and
                          Process 'SQL' Queries in R
  RSQLite                 SQLite Interface for R
  RSQLite.toolkit         Load Data in SQLite from Tabular Files
  RSSL                    Implementations of Semi-Supervised Learning
                          Approaches for Classification
  RSSOP                   Simulation of Supply Reservoir Systems using
                          Standard Operation Policy
  RSSRMR                  Robust Self-Representation Sparse
                          Reconstruction and Manifold Regularization
  RSSampling              Ranked Set Sampling
  RSStest                 Testing the Equality of Two Means Using RSS and
                          MRSS
  RSSthemes               RSS Palettes and Themes
  RSTr                    Gibbs Samplers for Discrete Bayesian
                          Spatiotemporal Models
  RScelestial             Scelestial: Steiner Tree Based Single-Cell
                          Lineage Tree Inference
  RSclient                Client for Rserve
  RSelenium               R Bindings for 'Selenium WebDriver'
  RSentiment              Analyse Sentiment of English Sentences
  RSiena                  Siena - Simulation Investigation for Empirical
                          Network Analysis
  RSizeBiased             Hypothesis Testing Based on R-Size Biased
                          Samples
  RSmallTelescopes        Empirical Small Telescopes Analysis
  RSmartlyIO              Loading Facebook and Instagram Advertising Data
                          from 'Smartly.io'
  RSpectra                Solvers for Large-Scale Eigenvalue and SVD
                          Problems
  RSpincalc               Conversion Between Attitude Representations of
                          DCM, Euler Angles, Quaternions, and Euler
                          Vectors
  RSqlParser              Parse 'SQL' Statements
  RSquaredMI              R-Squared with Multiply Imputed Data
  RStanTVA                TVA Models in 'Stan' using 'R' and 'StanTVA'
  RStata                  A Bit of Glue Between R and Stata
  RStoolbox               Remote Sensing Data Analysis
  RTCC                    Detecting Trait Clustering in Environmental
                          Gradients
  RTD                     Simple TD API Client
  RTDE                    Robust Tail Dependence Estimation
  RTFA                    Robust Factor Analysis for Tensor Time Series
  RTL                     Risk Tool Library - Trading, Risk, Analytics
                          for Commodities
  RTLknitr                Right to Left Dynamic Documents Using 'knitr'
  RTMB                    'R' Bindings for 'TMB'
  RTMBdist                Distributions Compatible with Automatic
                          Differentiation by 'RTMB'
  RTSA                    'Trial Sequential Analysis' for Error Control
                          and Inference in Sequential Meta-Analyses
  RTaxometrics            Taxometric Analysis
  RTextTools              Automatic Text Classification via Supervised
                          Learning
  RTransferEntropy        Measuring Information Flow Between Time Series
                          with Shannon and Renyi Transfer Entropy
  RTriangle               Triangle - A 2D Quality Mesh Generator and
                          Delaunay Triangulator
  RUnit                   R Unit Test Framework
  RVAideMemoire           Testing and Plotting Procedures for
                          Biostatistics
  RVCompare               Compare Real Valued Random Variables
  RVIpkg                  Regional Vulnerability Index
  RVerbalExpressions      Create Regular Expressions Easily
  RViennaCL               'ViennaCL' C++ Header Files
  RWDataPlyr              Read and Manipulate Data from 'RiverWare'
  RWNN                    Random Weight Neural Networks
  RWeka                   R/Weka Interface
  RWekajars               R/Weka Interface Jars
  RWgraph                 Random Walks on Graphs Representing a
                          Transactional Network
  RWiener                 Wiener Process Distribution Functions
  RWildbook               Interface for the 'Wildbook' Wildlife Data
                          Management Framework
  RWsearch                Lazy Search in R Packages, Task Views, CRAN,
                          the Web. All-in-One Download
  RXKCD                   Get XKCD Comic from R
  RYandexTranslate        R Interface to Yandex Translate API
  RZigZag                 Zig-Zag Sampler
  RZooRoH                 Partitioning of Individual Autozygosity into
                          Multiple Homozygous-by-Descent Classes
  RaCE.NMA                Rank-Clustered Estimation for Network
                          Meta-Analysis
  RaJIVE                  Robust Angle Based Joint and Individual
                          Variation Explained
  RaMS                    R Access to Mass-Spec Data
  RaSEn                   Random Subspace Ensemble Classification and
                          Variable Screening
  RaceID                  Identification of Cell Types, Inference of
                          Lineage Trees, and Prediction of Noise Dynamics
                          from Single-Cell RNA-Seq Data
  Racmacs                 Antigenic Cartography Macros
  RadData                 Nuclear Decay Data for Dosimetric Calculations
                          - ICRP 107
  RadEro                  Cs-137 Conversion Model
  RadOnc                  Analytical Tools for Radiation Oncology
  RadialVisGadgets        Interactive Gadgets for Radial Visualization
                          Approaches
  RadioSonde              Tools for Plotting Skew-T Diagrams and Wind
                          Profiles
  Radviz                  Project Multidimensional Data in 2D Space
  RagGrid                 A Wrapper of the 'JavaScript' Library 'agGrid'
  Rage                    Life History Metrics from Matrix Population
                          Models
  RaggedExperiment        Representation of Sparse Experiments and Assays
                          Across Samples
  RainfallErosivityFactor
                          The Rainfall-Runoff Erosivity Factor
  Ramble                  Parser Combinator for R
  RandMeta                Efficient Numerical Algorithm for Exact
                          Inference in Meta Analysis
  RandPro                 Random Projection with Classification
  RandVar                 Implementation of Random Variables
  RandomForestsGLS        Random Forests for Dependent Data
  RandomGaussianNB        Randomized Feature and Bootstrap-Enhanced
                          Gaussian Naive Bayes Classifier
  RandomProjectionTest    Two-Sample Test in High Dimensions using Random
                          Projection
  RandomWalker            Generate Random Walks Compatible with the
                          'tidyverse'
  Randomuseragent         Filtering and Randomly Sampling Real User-Agent
                          Strings
  RanglaPunjab            Displays Palette of 5 Colors
  RankAggSIgFUR           Polynomially Bounded Rank Aggregation under
                          Kemeny's Axiomatic Approach
  RankAggreg              Weighted Rank Aggregation
  RankPCA                 Rank of Variables Based on Principal Component
                          Analysis for Mixed Data Types
  RankResponse            Ranking Responses in a Single Response Question
                          or a Multiple Response Question
  Rankcluster             Model-Based Clustering for Multivariate Partial
                          Ranking Data
  RankingProject          The Ranking Project: Visualizations for
                          Comparing Populations
  Rapi                    Interface for Multiple Data Providers 'EDDS'
                          and 'FRED'
  RapidFuzz               String Similarity Computation Using 'RapidFuzz'
  RapidPolygonLookup      POLYGON LOOKUP USING KD TREES
  RapidoPGS               A Fast and Light Package to Compute Polygenic
                          Risk Scores
  Rapp                    Easily Build Command Line Applications
  RareComb                Combinatorial and Statistical Analyses of Rare
                          Events
  Rarity                  Calculation of Rarity Indices for Species and
                          Assemblages of Species
  RaschSampler            Rasch Sampler
  RastaRocket             Rocket-Fast Clinical Research Reporting
  RatingScaleReduction    Rating Scale Reduction Procedure
  RationalExp             Rationalizing Rational Expectations. Tests and
                          Deviations
  Rato                    Resilience Analysis Toolkit (RATO)
  Ravages                 Rare Variant Analysis and Genetic Simulations
  RavenR                  Raven Hydrological Modelling Framework R
                          Support and Analysis
  RawHummus               Raw Data Quality Control Tool for LC-MS System
  Rbearcat                University of Cincinnati Themes and Utilities
                          for Econometrics and Data Science
  Rbeast                  Bayesian Change-Point Detection and Time Series
                          Decomposition
  Rbent                   Robust Bent Line Regression
  RblDataLicense          R Interface to 'Bloomberg Data License'
  Rblpapi                 R Interface to 'Bloomberg'
  Rborist                 Extensible, Parallelizable Implementation of
                          the Random Forest Algorithm
  RbyExample              Data for the Book "R by Example"
  RcamelsCL               Easy Handling of the CAMELS-CL Dataset
  Rcan                    Cancer Registry Data Analysis and Visualisation
  Rcapture                Loglinear Models for Capture-Recapture
                          Experiments
  Rcatch22                Calculation of 22 CAnonical Time-Series
                          CHaracteristics
  RcausalEGM              A General Causal Inference Framework by
                          Encoding Generative Modeling
  Rcereal                 "Cereal Headers for R and C++ Serialization"
  RchivalTag              Analyzing and Interactive Visualization of
                          Archival Tagging Data
  Rchoice                 Discrete Choice (Binary, Poisson and Ordered)
                          Models with Random Parameters
  Rcmdr                   R Commander
  RcmdrMisc               R Commander Miscellaneous Functions
  RcmdrPlugin.BWS1        R Commander Plug-in for Case 1 Best-Worst
                          Scaling
  RcmdrPlugin.BWS2        R Commander Plug-in for Case 2 Best-Worst
                          Scaling
  RcmdrPlugin.BWS3        R Commander Plug-in for Case 3 Best-Worst
                          Scaling
  RcmdrPlugin.DCCV        R Commander Plug-in for Dichotomous Choice
                          Contingent Valuation
  RcmdrPlugin.DCE         R Commander Plug-in for Discrete Choice
                          Experiments
  RcmdrPlugin.DoE         R Commander Plugin for (Industrial) Design of
                          Experiments
  RcmdrPlugin.EBM         Rcmdr Evidence Based Medicine Plug-in Package
  RcmdrPlugin.EZR         R Commander Plug-in for the EZR (Easy R)
                          Package
  RcmdrPlugin.Export      Export R Output to LaTeX or HTML
  RcmdrPlugin.FactoMineR
                          Graphical User Interface for FactoMineR
  RcmdrPlugin.HH          Rcmdr Support for the HH Package
  RcmdrPlugin.KMggplot2   R Commander Plug-in for Data Visualization with
                          'ggplot2'
  RcmdrPlugin.MPAStats    R Commander Plug-in for MPA Statistics
  RcmdrPlugin.NMBU        R Commander Plug-in for University Level
                          Applied Statistics
  RcmdrPlugin.PcaRobust   R Commander Plug-in for Robust Principal
                          Component Analysis
  RcmdrPlugin.RMTCJags    R MTC Jags 'Rcmdr' Plugin
  RcmdrPlugin.ROC         Rcmdr Receiver Operator Characteristic Plug-in
                          Package
  RcmdrPlugin.RiskDemo    R Commander Plug-in for Risk Demonstration
  RcmdrPlugin.TeachStat   R Commander Plugin for Teaching Statistical
                          Methods
  RcmdrPlugin.TeachingDemos
                          Rcmdr Teaching Demos Plug-in
  RcmdrPlugin.UCA         UCA Rcmdr Plug-in
  RcmdrPlugin.WorldFlora
                          R Commander Plug-in for the 'WorldFlora'
                          Package
  RcmdrPlugin.aRnova      R Commander Plug-in for Repeated-Measures ANOVA
  RcmdrPlugin.depthTools
                          R Commander Depth Tools Plug-in
  RcmdrPlugin.orloca      A GUI for Planar Location Problems
  RcmdrPlugin.sos         Efficiently search the R help pages
  RcmdrPlugin.survival    R Commander Plug-in for the 'survival' Package
  RcmdrPlugin.temis       Graphical Integrated Text Mining Solution
  Rcompadre               Utilities for using the 'COM(P)ADRE' Matrix
                          Model Database
  Rcope                   Tools to Cope with Endogeneity Problems
  Rcpp                    Seamless R and C++ Integration
  RcppAPT                 'Rcpp' Interface to the APT Package Manager
  RcppAlgos               High Performance Tools for Combinatorics and
                          Computational Mathematics
  RcppAnnoy               'Rcpp' Bindings for 'Annoy', a Library for
                          Approximate Nearest Neighbors
  RcppArmadillo           'Rcpp' Integration for the 'Armadillo'
                          Templated Linear Algebra Library
  RcppArray               'Rcpp' Meets 'C++' Arrays
  RcppBDT                 'Rcpp' Bindings for the Boost Date_Time Library
  RcppBessel              Bessel Functions Rcpp Interface
  RcppBigIntAlgos         Factor Big Integers with the Parallel Quadratic
                          Sieve
  RcppBlaze               'Rcpp' Integration for the 'Blaze'
                          High-Performance 'C++' Math Library
  RcppCCTZ                'Rcpp' Bindings for the 'CCTZ' Library
  RcppCGAL                'Rcpp' Integration for 'CGAL'
  RcppCNPy                Read-Write Support for 'NumPy' Files via 'Rcpp'
  RcppCWB                 'Rcpp' Bindings for the 'Corpus Workbench'
                          ('CWB')
  RcppCensSpatial         Spatial Estimation and Prediction for
                          Censored/Missing Responses
  RcppClassic             Deprecated 'classic' 'Rcpp' 'API'
  RcppClassicExamples     Examples using 'RcppClassic' to Interface R and
                          C++
  RcppColMetric           Efficient Column-Wise Metric Computation
                          Against Common Vector
  RcppColors              Color Mappings and 'C++' Header Files for Color
                          Conversion
  RcppDE                  Global Optimization by Differential Evolution
                          in C++
  RcppDPR                 'Rcpp' Implementation of Dirichlet Process
                          Regression
  RcppDate                'date' C++ Header Library for Date and Time
                          Functionality
  RcppDist                'Rcpp' Integration of Additional Probability
                          Distributions
  RcppDynProg             'Rcpp' Dynamic Programming
  RcppEigen               'Rcpp' Integration for the 'Eigen' Templated
                          Linear Algebra Library
  RcppEigenAD             Generate Partial Derivatives using 'Rcpp',
                          'Eigen' and 'CppAD'
  RcppEnsmallen           Header-Only C++ Mathematical Optimization
                          Library for 'Armadillo'
  RcppExamples            Examples using 'Rcpp' to Interface R and C++
  RcppFarmHash            Interface to the Google 'FarmHash' Family of
                          Hash Functions
  RcppFastAD              'Rcpp' Bindings to 'FastAD'
                          Auto-Differentiation
  RcppFastFloat           'Rcpp' Bindings for the 'fast_float'
                          Header-Only Library for Number Parsing
  RcppGSL                 'Rcpp' Integration for 'GNU GSL' Vectors and
                          Matrices
  RcppGetconf             'Rcpp' Interface for Querying System
                          Configuration Variables
  RcppGreedySetCover      Greedy Set Cover
  RcppHMM                 Rcpp Hidden Markov Model
  RcppHNSW                'Rcpp' Bindings for 'hnswlib', a Library for
                          Approximate Nearest Neighbors
  RcppHungarian           Solves Minimum Cost Bipartite Matching Problems
  RcppInt64               'Rcpp'-Based Helper Functions to Pass 'Int64'
                          and 'nanotime' Values Between 'R' and 'C++'
  RcppJagger              An R Wrapper for Jagger
  RcppML                  Rcpp Machine Learning Library
  RcppMagicEnum           'Rcpp' Bindings to 'Magic Enum' 'C++' 'Enum'
                          Support
  RcppMeCab               'rcpp' Wrapper for 'mecab' Library
  RcppMsgPack             'MsgPack' C++ Header Files and Interface
                          Functions for R
  RcppNLoptExample        'Rcpp' Package Illustrating Header-Only Access
                          to 'NLopt'
  RcppNumerical           'Rcpp' Integration for Numerical Computing
                          Libraries
  RcppParallel            Parallel Programming Tools for 'Rcpp'
  RcppPlanc               Parallel Low-Rank Approximation with
                          Nonnegativity Constraints
  RcppProgress            An Interruptible Progress Bar with OpenMP
                          Support for C++ in R Packages
  RcppQuantuccia          R Bindings to the Calendaring Functionality of
                          'QuantLib'
  RcppRedis               'Rcpp' Bindings for 'Redis' using the 'hiredis'
                          Library
  RcppRoll                Efficient Rolling / Windowed Operations
  RcppSMC                 Rcpp Bindings for Sequential Monte Carlo
  RcppSimdJson            'Rcpp' Bindings for the 'simdjson' Header-Only
                          Library for 'JSON' Parsing
  RcppSpdlog              R and C++ Interfaces to 'spdlog' C++ Header
                          Library for Logging
  RcppTN                  Rcpp-Based Truncated Normal Distribution RNG
                          and Family
  RcppTOML                'Rcpp' Bindings to Parser for "Tom's Obvious
                          Markup Language"
  RcppThread              R-Friendly Threading in C++
  RcppTskit               'R' Access to the 'tskit C' API
  RcppUUID                Generating Universally Unique Identificators
  RcppXPtrUtils           XPtr Add-Ons for 'Rcpp'
  RcppXsimd               Xsimd C++ Header-Only Library Files
  RcppXts                 Interface the 'xts' API via 'Rcpp'
  RcppZiggurat            'Rcpp' Integration of Different "Ziggurat"
                          Normal RNG Implementations
  Rcriticor               Pierre-Goldwin Correlogram
  Rcsdp                   R Interface to the CSDP Semidefinite
                          Programming Library
  Rcssplot                Styling of Graphics using Cascading Style
                          Sheets
  Rcurvep                 Concentration-Response Data Analysis using
                          Curvep
  Rd2md                   Markdown Reference Manuals
  Rd2roxygen              Convert Rd to 'Roxygen' Documentation
  Rdatasets               Access Datasets from the Rdatasets Archive
  Rdice                   A Collection of Functions to Experiment Dice
                          Rolls
  Rdimtools               Dimension Reduction and Estimation Methods
  Rdisop                  Decomposition of Isotopic Patterns
  Rdistance               Density and Abundance from Distance-Sampling
                          Surveys
  Rdpack                  Update and Manipulate Rd Documentation Objects
  Rdrw                    Univariate and Multivariate Damped Random Walk
                          Processes
  Rdsdp                   R Interface to DSDP Semidefinite Programming
                          Library
  Rdta                    Data Transforming Augmentation for Linear Mixed
                          Models
  Rduckhts                'DuckDB' High Throughput Sequencing File
                          Formats Reader Extension
  Rduino                  A Microcontroller Interface
  Rduinoiot               'Arduino Iot Cloud API' R Client
  Rdune                   'Creates Color Palettes Inspired by Dune'
  ReAD                    Powerful Replicability Analysis of Genome-Wide
                          Association Studies
  ReDaMoR                 Relational Data Modeler
  ReDirection             Predict Dominant Direction of Reactions of a
                          Biochemical Network
  ReIns                   Functions from "Reinsurance: Actuarial and
                          Statistical Aspects"
  ReMFPCA                 Regularized Multivariate Functional Principal
                          Component Analysis
  ReSurv                  Machine Learning Models for Predicting Claim
                          Counts
  ReVAMP                  Interface to 'Vamp' Audio Analysis Plugins
  ReacTran                Reactive Transport Modelling in 1d, 2d and 3d
  Reacnorm                Perform a Partition of Variance of Reaction
                          Norms
  ReadDIM                 Read ESA SNAP Processed Raster Format in R
  RealSurvSim             Simulate Survival Data
  RealVAMS                Multivariate VAM Fitting
  Rearrangement           Monotonize Point and Interval Functional
                          Estimates by Rearrangement
  RecAssoRules            Recursive Mining for Frequent Pattern and
                          Confident Association Rules
  Recocrop                Estimating Environmental Suitability for Plants
  Recon                   Computational Tools for Economics
  RecordLinkage           Record Linkage Functions for Linking and
                          Deduplicating Data Sets
  RecordTest              Inference Tools in Time Series Based on Record
                          Statistics
  Records                 Record Values and Record Times
  RedditExtractoR         Reddit Data Extraction Toolkit
  RedeAgroRadar           Weather Radar Monitoring and 'Telegram' Alerts
                          for Agriculture Research
  RedeR                   Interactive visualization and manipulation of
                          nested networks
  RedisBaseContainer      The Container for the DockerParallel Package
  Rediscover              Identify Mutually Exclusive Mutations
  RefBasedMI              Reference-Based Imputation for Longitudinal
                          Clinical Trials with Protocol Deviation
  RefManageR              Straightforward 'BibTeX' and 'BibLaTeX'
                          Bibliography Management
  RegAssure               Streamlined Integration of Regression
                          Assumption
  RegCalReliab            Regression Calibration Using Reliability
                          Studies
  RegCombin               Partially Linear Regression under Data
                          Combination
  RegDDM                  Generalized Linear Regression with DDM
  RegEnRF                 Regression-Enhanced Random Forests
  RegKink                 Regression Kink with a Time-Varying Threshold
  RegSDC                  Information Preserving Regression-Based Tools
                          for Statistical Disclosure Control
  RegimeChange            Comprehensive Regime Change Detection in Time
                          Series
  RegionalConsistency     Calculate Regional Consistency Probabilities
                          for Multi-Regional Clinical Trials
  RegrCoeffsExplorer      Efficient Visualization of Regression
                          Coefficients for Lm(), Glm(), and Glmnet()
                          Objects
  RegressionFactory       Expander Functions for Generating Full Gradient
                          and Hessian from Single-Slot and Multi-Slot
                          Base Distributions
  ReinforcementLearning   Model-Free Reinforcement Learning
  RelDists                Estimation for some Reliability Distributions
  RelativeDistClust       Clustering with a Novel Non Euclidean Relative
                          Distance
  Relectoral              Electoral Analysis
  ReliaGrowR              Reliability Growth Analysis and Repairable
                          Systems Modeling
  ReliaLearnR             Learning Modules for Reliability Analysis
  ReliaPlotR              Interactive Reliability Probability Plots
  ReliaShiny              A 'Shiny' App for Reliability Analysis
  ReliabilityTheory       Structural Reliability Analysis
  RelimpPCR               Relative Importance PCA Regression
  Renext                  Renewal Method for Extreme Values Extrapolation
  RenvModule              Interface to Allow Full Use of the Environment
                          Modules System for Unix
  Renvlp                  Computing Envelope Estimators
  RenyiExtropy            Entropy and Extropy Measures for Probability
                          Distributions
  RepaymentPlan           Calculation of Mortgage Plan or Repayment Plan
  RepeatABEL              GWAS for Multiple Observations on Related
                          Individuals
  RepeatedHighDim         Methods for High-Dimensional Repeated Measures
                          Data
  Replicate               Statistical Metrics for Multisite Replication
                          Studies
  ReplicationSuccess      Design and Analysis of Replication Studies
  Repliscope              Replication Timing Profiling using DNA Copy
                          Number
  RepoGenerator           Generates a Project and Repo for Easy
                          Initialization of a Workshop
  ReportSubtotal          Adds Subtotals to Data Reports
  ReporterScore           Generalized Reporter Score-Based Enrichment
                          Analysis for Omics Data
  ReproStat               Reproducibility Diagnostics for Statistical
                          Modeling
  Require                 Installing and Loading R Packages for
                          Reproducible Workflows
  ResIN                   Conduct Response Item Network (ResIN) Analysis
                          with Social Response Data
  ResIndex                Generate Simple yet Effective Metric of Feature
                          Importance for Classification Problems
  ResPBIBD                "Resolvable Partially Balanced Incomplete Block
                          Designs (PBIBDs)"
  ResidentialEnergyConsumption
                          Residential Energy Consumption Data
  ResidualMatrix          Creating a DelayedMatrix of Regression
                          Residuals
  ResistorArray           Electrical Properties of Resistor Networks
  ResourceSelection       Resource Selection (Probability) Functions for
                          Use-Availability Data
  RespirAnalyzer          Analysis Functions of Respiratory Data
  RestRserve              A Framework for Building HTTP API
  RestoreNet              Random-Effects Stochastic Reaction Networks
  ResultModelManager      Result Model Manager
  RevGadgets              Visualization and Post-Processing of 'RevBayes'
                          Analyses
  RevSD                   Visualizing the Standard Deviation via
                          Revolution
  ReviewR                 A Light-Weight, Portable Tool for Reviewing
                          Individual Patient Records
  Revticulate             Interaction with "RevBayes" in R
  RfEmpImp                Multiple Imputation using Chained Random
                          Forests
  Rfacebook               Access to Facebook API via R
  Rfast                   A Collection of Efficient and Extremely Fast R
                          Functions
  Rfast2                  A Collection of Efficient and Extremely Fast R
                          Functions II
  Rfit                    Rank-Based Estimation for Linear Models
  Rfmtool                 Fuzzy Measure Tools
  Rfolding                The Folding Test of Unimodality
  Rforestry               Random Forests, Linear Trees, and Gradient
                          Boosting for Inference and Interpretability
  Rfractran               A 'FRACTRAN' Interpreter and Some Helper
                          Functions
  Rfuzzycoco              Provides an R Interface to the 'FuzzyCoCo' C++
                          Library and Extends It
  Rgbp                    Hierarchical Modeling and Frequency Method
                          Checking on Overdispersed Gaussian, Poisson,
                          and Binomial Data
  Rgff                    R Utilities for GFF Files
  Rglottography           Programmatic Access to Glottography Speaker
                          Area Polygons
  Rglpk                   R/GNU Linear Programming Kit Interface
  Rgof                    1d Goodness of Fit Tests
  RgoogleMaps             Overlays on Static Maps
  Rgraphviz               Provides plotting capabilities for R graph
                          objects
  Rhdf5lib                hdf5 library as an R package
  RhpcBLASctl             Control the Number of Threads on 'BLAS'
  Rhtslib                 HTSlib high-throughput sequencing library as an
                          R package
  Ricrt                   Randomization Inference of Clustered Randomized
                          Trials
  RiemBase                Functions and C++ Header Files for Computation
                          on Manifolds
  Riemann                 Learning with Data on Riemannian Manifolds
  Riex                    IEX Stocks and Market Data
  Rigma                   Access to the 'Figma' API
  Rigraphlib              igraph library as an R package
  Rilostat                Access and Manipulation of ILOSTAT Labour
                          Statistics
  Rirt                    Data Analysis and Parameter Estimation Using
                          Item Response Theory
  Risk                    Computes 26 Financial Risk Measures for Any
                          Continuous Distribution
  RiskMap                 Geostatistical Modeling of Spatially Referenced
                          Data
  RiskPortfolios          Computation of Risk-Based Portfolios
  RiskScorescvd           Cardiovascular Risk Scores Calculator
  RiskyCNV                Risk Analysis of Genomic Copy Number Variation
  Rita                    Automated Transformations, Normality Testing,
                          and Reporting
  Ritc                    Isothermal Titration Calorimetry (ITC) Data
                          Analysis
  RivRetrieve             Retrieve Global River Gauge Data
  RiverBuilder            River Generation for Given Data Sets
  Rivivc                  In Vitro in Vivo Correlation Linear Level "A"
  RkMetrics               Hybrid Mortality Estimation
  Rlab                    Functions and Datasets Required for ST370 Class
  Rlabkey                 Data Exchange Between R and 'LabKey' Server
  Rlibeemd                Ensemble Empirical Mode Decomposition (EEMD)
                          and Its Complete Variant (CEEMDAN)
  Rlibkdv                 A Versatile Kernel Density Visualization
                          Library for Geospatial Analytics (Heatmap)
  Rlinkedin               Access to the LinkedIn API via R
  Rlinsolve               Iterative Solvers for (Sparse) Linear System of
                          Equations
  Rlof                    R Parallel Implementation of Local Outlier
                          Factor(LOF)
  Rmalschains             Continuous Optimization using Memetic
                          Algorithms with Local Search Chains
                          (MA-LS-Chains)
  RmdConcord              Concordances for 'R Markdown'
  RmecabKo                An 'Rcpp' Interface for Eunjeon Project
  Rmfrac                  Simulation and Statistical Analysis of
                          Multifractional Processes
  Rmisc                   Ryan Miscellaneous
  Rmixmod                 Classification with Mixture Modelling
  Rmodule                 Automated Markov Chain Monte Carlo for
                          Arbitrarily Structured Correlation Matrices
  Rmoji                   Interactively Insert Emojis in 'R' Documents
  Rmolt                   Graphic Visualization of the Birds' Molt
  Rmonize                 Tools for Data Harmonization
  Rmosek                  The R to MOSEK Optimization Interface
  Rmpfr                   Interface R to MPFR - Multiple Precision
                          Floating-Point Reliable
  Rmpi                    Interface (Wrapper) to MPI (Message-Passing
                          Interface)
  Rnanoflann              Extremely Fast Nearest Neighbor Search
  Rnaught                 Estimate the Basic Reproduction Number (R0)
  RnavGraphImageData      Image Data Used in the Loon Package Demos
  Rnest                   Next Eigenvalue Sufficiency Test
  Rnightly                A Wrapper of the 'JavaScript' Library 'Nightly'
  Rnmr1D                  Perform the Complete Processing of a Set of
                          Proton Nuclear Magnetic Resonance Spectra
  Rnumerai                Interface to the Numerai Machine Learning
                          Tournament API
  Rnvd3                   An Incomplete Wrapper of the 'nvd3' JavaScript
                          Library
  RoBMA                   Robust Bayesian Meta-Analyses
  RoBSA                   Robust Bayesian Survival Analysis
  RoME                    Multiple Checks on MEDITS Trawl Survey Data
  RobAStBase              Robust Asymptotic Statistics
  RobAStRDA               Interpolation Grids for Packages of the
                          'RobASt' - Family of Packages
  RobExtremes             Optimally Robust Estimation for Extreme Value
                          Distributions
  RobGARCHBoot            Robust Bootstrap Forecast Densities for GARCH
                          Models
  RobKF                   Innovative and/or Additive Outlier Robust
                          Kalman Filtering
  RobLox                  Optimally Robust Influence Curves and
                          Estimators for Location and Scale
  RobMixReg               Robust Mixture Regression
  RobPC                   Robust Panel Clustering Algorithm
  RobPer                  Robust Periodogram and Periodicity Detection
                          Methods
  RobRegression           Robust Multivariate Regression
  RobStatTM               Robust Statistics: Theory and Methods
  RobinCID                Robust Inference in Complex Innovative Trial
                          Design
  RobinCar                Robust Inference for Covariate Adjustment in
                          Randomized Clinical Trials
  RobinCar2               ROBust INference for Covariate Adjustment in
                          Randomized Clinical Trials
  RobinHood               Interface for the RobinHood.com No Commission
                          Investing Platform
  RobustAFT               Truncated Maximum Likelihood Fit and Robust
                          Accelerated Failure Time Regression for
                          Gaussian and Log-Weibull Case
  RobustANOVA             Robust One-Way ANOVA Tests under
                          Heteroscedasticity and Nonnormality
  RobustAdaptiveDecomposition
                          Decomposes a Univariate Time Series into
                          Subcomponents
  RobustBF                Robust Solution to the Behrens-Fisher Problem
  RobustBayesianCopas     Robust Bayesian Copas Selection Model
  RobustCalibration       Robust Calibration of Imperfect Mathematical
                          Models
  RobustFlow              Robustness and Drift Auditing for Longitudinal
                          Decision Systems
  RobustGaSP              Robust Gaussian Stochastic Process Emulation
  RobustIV                Robust Instrumental Variable Methods in Linear
                          Models
  RobustLinearReg         Robust Linear Regressions
  RobustMediate           Causal Mediation Analysis with Diagnostics and
                          Sensitivity Analysis
  RobustMetrics           Calculates Robust Performance Metrics for
                          Imbalanced Classification Problems
  RobustPrediction        Robust Tuning and Training for Cross-Source
                          Prediction
  RobustRankAggreg        Methods for Robust Rank Aggregation
  Robyn                   Semi-Automated Marketing Mix Modeling (MMM)
                          from Meta Marketing Science
  RockFab                 Rock Fabric and Strain Analysis Tools
  Rogue                   Identify Rogue Taxa in Sets of Phylogenetic
                          Trees
  RolWinMulCor            Subroutines to Estimate Rolling Window Multiple
                          Correlation
  RolWinWavCor            Estimate Rolling Window Wavelet Correlation
                          Between Two Time Series
  Romeb                   Robust Median-Based Bayesian Growth Curve
                          Modeling
  Romney                  Classical Cultural Consensus Analysis
  Rook                    HTTP Web Server for R
  RootsExtremaInflections
                          Finds Roots, Extrema and Inflection Points of a
                          Curve
  RootscanR               Stitching and Analyzing Root Scans
  Ropj                    Import Origin(R) Project Files
  RoughSets               Data Analysis Using Rough Set and Fuzzy Rough
                          Set Theories
  RoundAndRound           Plot Objects Moving in Orbits
  Rpadrino                Interact with the 'PADRINO' IPM Database
  Rparadox                Read Paradox Database Files into R
  Rpdb                    Read, Write, Visualize and Manipulate PDB Files
  Rphylopars              Phylogenetic Comparative Tools for Missing Data
                          and Within-Species Variation
  RplotterPkg             R Plotting Functions Using 'ggplot2'
  Rpoppler                PDF Tools Based on Poppler
  RprobitB                Bayesian Probit Choice Modeling
  Rprofet                 WOE Transformation and Scorecard Builder
  Rquake                  Seismic Hypocenter Determination
  Rquefts                 Quantitative Evaluation of the Native Fertility
                          of Tropical Soils
  Rramas                  Matrix Population Models
  Rraven                  Connecting R and 'Raven' Sound Analysis
                          Software
  Rrdap                   RDAP Server Querying
  Rrepest                 An Analyzer of International Large Scale
                          Assessments in Education
  RsSimulx                Extension of 'lixoftConnectors' for 'Simulx'
  Rsagacmd                Linking R with the Open-Source 'SAGA-GIS'
                          Software
  Rsampling               Ports the Workflow of "Resampling Stats" Add-in
                          to R
  Rsamtools               Binary alignment (BAM), FASTA, variant call
                          (BCF), and tabix file import
  Rsearch                 Processing and Analyzing Amplicon Sequence Data
  Rserve                  Versatile R Server
  Rsfar                   Seasonal Functional Autoregressive Models
  Rsgf                    SGF (Smart Game File) File Format Import
  RsimdDispatch           Runtime 'SIMD' Dispatch Templates for 'C' Code
                          in 'R' Packages
  Rsmlx                   R Speaks 'Monolix'
  Rsolnp                  General Non-Linear Optimization
  Rsomoclu                Somoclu
  Rspc                    Nelson Rules for Control Charts
  Rspotify                Access to Spotify API
  RsqMed                  Total Mediation Effect Size Measure for
                          High-Dimensional Mediators
  Rssa                    A Collection of Methods for Singular Spectrum
                          Analysis
  Rstg                    STG : Feature Selection using STochastic Gates
  Rsubbotools             Fast Estimation of Subbottin and AEP
                          Distributions (Generalized Error Distribution)
  Rsubread                Mapping, quantification and variant analysis of
                          sequencing data
  Rsurrogate              Robust Estimation of the Proportion of
                          Treatment Effect Explained by Surrogate Marker
                          Information
  Rsymphony               SYMPHONY in R
  Rtauchen                Discretization of AR(1) Processes
  Rthingsboard            'ThingsBoard' API
  Rtinycc                 Builds the 'TinyCC' Command-Line Interface and
                          Library for 'C' Scripting in 'R'
  Rtnmin                  Truncated Newton Function Minimization with
                          Bounds Constraints
  Rtrack                  Spatial Navigation Strategy Analysis
  Rtropical               Data Analysis Tools over Space of Phylogenetic
                          Trees Using Tropical Geometry
  RtsEva                  Performs the Transformed-Stationary Extreme
                          Values Analysis
  Rtsne                   T-Distributed Stochastic Neighbor Embedding
                          using a Barnes-Hut Implementation
  Rttf2pt1                'ttf2pt1' Program
  Rtumblr                 Collecting and Analyzing 'Tumblr' Data
  Rtwalk                  An MCMC Sampler Using the t-Walk Algorithm
  Rtwobitlib              '2bit' 'C' Library
  RuHere                  Flags Spatial Errors in Biological Collection
                          Data Using Specialists' Information
  Ruido                   Soundscape Background Noise, Power, and
                          Saturation
  RulesTools              Preparing, Analyzing, and Visualizing
                          Association Rules
  Runuran                 R Interface to the 'UNU.RAN' Random Variate
                          Generators
  Rvcg                    Manipulations of Triangular Meshes Based on the
                          'VCGLIB' API
  Rveg                    Digitization of Phytosociological Relevés
  Rvoterdistance          Voter Distance to Polling Locations
  Rwave                   Time-Frequency Analysis of 1-D Signals
  Rwbo                    Run the 'Open-WBO' MaxSAT Solver
  RweaveExtra             Sweave Drivers with Extra Tricks Up their
                          Sleeves
  Rwhois                  WHOIS Server Querying
  Rwofost                 WOFOST Crop Growth Simulation Model
  RxnSim                  Functions to Compute Chemical and Chemical
                          Reaction Similarity
  Ryacas                  R Interface to the 'Yacas' Computer Algebra
                          System
  S3VS                    Structured Screen-and-Select Variable Selection
                          in Linear, Generalized Linear, and Survival
                          Models
  S4Arrays                Foundation of array-like containers in
                          Bioconductor
  S4DM                    Small Sample Size Species Distribution Modeling
  S4Vectors               Foundation of vector-like and list-like
                          containers in Bioconductor
  S7                      An Object Oriented System Meant to Become a
                          Successor to S3 and S4
  S7schema                'S7' Framework for Schema-Validated YAML
                          Configuration
  SACCR                   SA Counterparty Credit Risk under CRR2
  SADEG                   Stability Analysis in Differentially Expressed
                          Genes
  SADISA                  Species Abundance Distributions with
                          Independent-Species Assumption
  SAEval                  Small Area Estimation Evaluation
  SAFARI                  Shape Analysis for AI-Reconstructed Images
  SAFD                    Statistical Analysis of Fuzzy Data
  SAFEMCN                 Network Topology Parameter Analysis with
                          Rarefaction
  SAFEPG                  A Novel SAFE Model for Predicting
                          Climate-Related Extreme Losses
  SAGM                    Spatial Autoregressive Graphical Model
  SAGMM                   Clustering via Stochastic Approximation and
                          Gaussian Mixture Models
  SAKERNAS                A National Labor Force Survey of Indonesia
  SALES                   The (Adaptive) Elastic Net and Lasso Penalized
                          Sparse Asymmetric Least Squares (SALES) and
                          Coupled Sparse Asymmetric Least Squares
                          (COSALES) using Coordinate Descent and Proximal
                          Gradient Algorithms
  SALTSampler             Efficient Sampling on the Simplex
  SAM                     Sparse Additive Modelling
  SAMBA                   Selection and Misclassification Bias Adjustment
                          for Logistic Regression Models
  SAME                    Seamless Adaptive Multi-Arm Multi-Stage
                          Enrichment
  SAMGEP                  A Semi-Supervised Method for Prediction of
                          Phenotype Event Times
  SAMTx                   Sensitivity Assessment to Unmeasured
                          Confounding with Multiple Treatments
  SAMUR                   Stochastic Augmentation of Matched Data Using
                          Restriction Methods
  SAMprior                Self-Adapting Mixture (SAM) Priors
  SAMtool                 Stock Assessment Methods Toolkit
  SANple                  Fitting Shared Atoms Nested Models via Markov
                          Chains Monte Carlo
  SANvi                   Fitting Shared Atoms Nested Models via
                          Variational Bayes
  SAP                     Statistical Analysis and Programming
  SAPP                    Statistical Analysis of Point Processes
  SAR                     Smart Adaptive Recommendations
  SARP.compo              Network-Based Interpretation of Changes in
                          Compositional Data
  SARP.moodle             XML Output Functions for Easy Creation of
                          Moodle Questions
  SAScii                  Import ASCII Files Directly into R using Only a
                          'SAS' Input Script
  SASdates                Convert the Dates to 'SAS' Formats
  SASmarkdown             'SAS' Markdown
  SASmixed                Data Sets from "SAS System for Mixed Models
  SAVER                   Single-Cell RNA-Seq Gene Expression Recovery
  SAiVE                   Functions Used for SAiVE Group Research,
                          Collaborations, and Publications
  SAutomata               Inference and Learning in Stochastic Automata
  SBAGM                   Search Best ARIMA, GARCH, and MS-GARCH Model
  SBI                     Simple Blinding Index for Randomized Controlled
                          Trials
  SBICgraph               Structural Bayesian Information Criterion for
                          Graphical Models
  SBMTrees                Longitudinal Sequential Imputation and
                          Prediction with Bayesian Trees Mixed-Effects
                          Models for Longitudinal Data
  SBN                     Generate Stochastic Branching Networks
  SBOAtools               Secretary Bird Optimization for Continuous
                          Optimization and Neural Network Training
  SBSDiff                 Satorra-Bentler Scaled Chi-Squared Difference
                          Test
  SBdecomp                Estimation of the Proportion of SB Explained by
                          Confounders
  SBmedian                Scalable Bayes with Median of Subset Posteriors
  SC2API                  Blizzard SC2 API Wrapper
  SCBiclust               Identifies Mean, Variance, and Hierarchically
                          Clustered Biclusters
  SCBmeanfd               Simultaneous Confidence Bands for the Mean of
                          Functional Data
  SCCS                    The Self-Controlled Case Series Method
  SCDA                    Spatially-Clustered Data Analysis
  SCDB                    Easily Access and Maintain Time-Based Versioned
                          Data (Slowly-Changing-Dimension)
  SCE                     Stepwise Clustered Ensemble
  SCEPtER                 Stellar CharactEristics Pisa Estimation gRid
  SCEPtERbinary           Stellar CharactEristics Pisa Estimation gRid
                          for Binary Systems
  SCEnt                   Single Cell Entropy Analysis of Gene
                          Heterogeneity in Cell Populations
  SCFMonitor              Clear Monitor and Graphing Software Processing
                          Gaussian .log File
  SCGLR                   Supervised Component Generalized Linear
                          Regression
  SCI                     Standardized Climate Indices Such as SPI, SRI
                          or SPEI
  SCIBER                  Single-Cell Integrator and Batch Effect Remover
  SCIproj                 Creates a Scientific Project Skeleton as an R
                          Package
  SCOPRO                  Score Projection Between in 'Vivo' and in
                          'Vitro' Datasets
  SCOR                    Spherically Constrained Optimization Routine
  SCORNET                 Semi-Supervised Calibration of Risk with Noisy
                          Event Times
  SCORPION                Single Cell Oriented Reconstruction of PANDA
                          Individually Optimized Networks
  SCOUTer                 Simulate Controlled Outliers
  SChangeBlock            Spatial Structural Change Detection by an
                          Analysis of Variability Between Blocks of
                          Observations
  SCoRES                  Simultaneous Confidence Region Excursion Sets
  SCperf                  Functions for Planning and Managing Inventories
                          in a Supply Chain
  SCpubr                  Generate Publication Ready Visualizations of
                          Single Cell Transcriptomics Data
  SCtools                 Extensions for Synthetic Controls Analysis
  SDAR                    Stratigraphic Data Analysis
  SDAResources            Datasets and Functions for 'Sampling: Design
                          and Analysis, 3rd Edition'
  SDCNway                 Tools to Evaluate Disclosure Risk
  SDGLM                   Scalable Bayesian Inference for Dynamic
                          Generalized Linear Models
  SDGdetector             Detect SDGs and Targets in Text
  SDI                     Slow Digestibility Index
  SDLfilter               Filtering and Assessing the Sample Size of
                          Tracking Data
  SDModels                Spectrally Deconfounded Models
  SDMtune                 Species Distribution Model Selection
  SDPDmod                 Spatial Dynamic Panel Data Modeling
  SDPrism2D               Visualizing the Standard Deviation as the Size
                          of a Prism
  SDT                     Self-Determination Theory Measures
  SDaA                    Sampling: Design and Analysis
  SE.EQ                   SE-Test for Equivalence
  SEA                     Segregation Analysis
  SEAGLE                  Scalable Exact Algorithm for Large-Scale
                          Set-Based Gene-Environment Interaction Tests
  SEAHORS                 Spatial Exploration of ArcHaeological Objects
                          in R Shiny
  SEARS                   Seamless Dose Escalation/Expansion with
                          Adaptive Randomization Scheme
  SECFISH                 Disaggregate Variable Costs
  SECP                    Statistical Estimation of Cluster Parameters
  SEERaBomb               SEER and Atomic Bomb Survivor Data Analysis
                          Tools
  SEI                     Calculating Standardised Indices
  SEIRfansy               Extended Susceptible-Exposed-Infected-Recovery
                          Model
  SEL                     Semiparametric Elicitation
  SELF                    A Structural Equation Embedded Likelihood
                          Framework for Causal Discovery
  SEMID                   Identifiability of Linear Structural Equation
                          Models
  SEMdeep                 Structural Equation Modeling with Deep Neural
                          Network and Machine Learning Algorithms
  SEMgraph                Network Analysis and Causal Inference Through
                          Structural Equation Modeling
  SEMsens                 A Tool for Sensitivity Analysis in Structural
                          Equation Modeling
  SEMsensitivity          SEM Sensitivity Analysis
  SEPA                    Segment Profile Extraction via Pattern Analysis
  SEPaLS                  Shrinkage for Extreme Partial Least-Squares
                          (SEPaLS)
  SEQTaRget               Sequential Trial Emulation
  SESraster               Raster Randomization for Null Hypothesis
                          Testing
  SEofM                   Standard Error of Measurement
  SEset                   Computing Statistically-Equivalent Path Models
  SFDesign                Space-Filling Designs
  SFHNV                   Structural Forest for the Heterogeneous
                          Newsvendor Model
  SFM                     A Package for Analyzing Skew Factor Models
  SFOCDs                  Space Filling Optimal Covariate Designs
  SFPL                    Sparse Fused Plackett-Luce
  SFtools                 Space Filling Based Tools for Data Mining
  SGB                     Simplicial Generalized Beta Regression
  SGDinference            Inference with Stochastic Gradient Descent
  SGL                     Fit a GLM (or Cox Model) with a Combination of
                          Lasso and Group Lasso Regularization
  SGP                     Student Growth Percentiles & Percentile Growth
                          Trajectories
  SGPR                    Sparse Group Penalized Regression for Bi-Level
                          Variable Selection
  SGPdata                 Exemplar Data Sets for Student Growth
                          Percentiles (SGP) Analyses
  SHAKTI                  Suite for Heat-Related Adsorption Knowledge and
                          Thermodynamic Inference
  SHAPBoost               The SHAPBoost Feature Selection Algorithm
  SHAPforxgboost          SHAP Plots for 'XGBoost'
  SHARK4R                 Accessing and Validating Marine Environmental
                          Data from 'SHARK' and Related Databases
  SHELF                   Tools to Support the Sheffield Elicitation
                          Framework
  SHIP                    Shrinkage Covariance Incorporating Prior
                          Knowledge
  SHRED                   Setwise Hierarchical Rate of Erroneous
                          Discovery
  SHT                     Statistical Hypothesis Testing Toolbox
  SIAmodules              Modules for 'ShinyItemAnalysis'
  SIAtools                'ShinyItemAnalysis' Modules Development Toolkit
  SIBER                   Stable Isotope Bayesian Ellipses in R
  SIBERG                  Systematic Identification of Bimodally
                          Expressed Genes Using RNAseq Data
  SID                     Structural Intervention Distance
  SIDES                   Subgroup Identification Based on Differential
                          Effect Search
  SIGN                    Similarity Identification in Gene Expression
  SIHR                    Statistical Inference in High Dimensional
                          Regression
  SILFS                   Subgroup Identification with Latent Factor
                          Structure
  SILGGM                  Statistical Inference of Large-Scale Gaussian
                          Graphical Model in Gene Networks
  SILM                    Simultaneous Inference for Linear Models
  SIMEXBoost              Boosting Method for High-Dimensional
                          Error-Prone Data
  SIMICO                  Set-Based Inference for Multiple
                          Interval-Censored Outcomes
  SIMMS                   Subnetwork Integration for Multi-Modal
                          Signatures
  SIMPLE.REGRESSION       OLS, Moderated, Logistic, and Count Regressions
                          Made Simple
  SIMPLICA                Biclustering via Simplivariate Component
                          Analysis
  SIMle                   Estimation and Inference for General Time
                          Series Regression
  SIMplyBee               'AlphaSimR' Extension for Simulating Honeybee
                          Populations and Breeding Programmes
  SINRELEF.LD             Reliability and Relative Efficiency in
                          Locally-Dependent Measures
  SIP                     Single-Iteration Permutation for Large-Scale
                          Biobank Data
  SIPDIBGE                Collection of Household Survey Packages
                          Conducted by IBGE
  SIPETool                SIFT-MS and CPET Data Processor
  SIRE                    Finding Feedback Effects in SEM and Testing for
                          Their Significance
  SIRmcmc                 Compartmental Susceptible-Infectious-Recovered
                          (SIR) Model of Community and Household
                          Infection
  SIRthresholded          Sliced Inverse Regression with Thresholding
  SIS                     Sure Independence Screening
  SISIR                   Select Intervals Suited for Functional
                          Regression
  SIT                     Association Measurement Through Sliced
                          Independence Test (SIT)
  SITH                    A Spatial Model of Intra-Tumor Heterogeneity
  SK4FGA                  Scott-Knott for Forensic Glass Analysis
  SKAT                    SNP-Set (Sequence) Kernel Association Test
  SKBD                    Shared Keyboard Designs for Phase I
                          Dose-Finding Trials
  SKFCPD                  Fast Online Changepoint Detection for
                          Temporally Correlated Data
  SKNN                    A Super K-Nearest Neighbor (SKNN)
                          Classification Algorithm
  SLCARE                  Semiparametric Latent Class Analysis of
                          Recurrent Events
  SLEMI                   Statistical Learning Based Estimation of Mutual
                          Information
  SLFPCA                  Sparse Logistic Functional Principal Component
                          Analysis
  SLGP                    Spatial Logistic Gaussian Process for Field
                          Density Estimation
  SLHD                    Maximin-Distance (Sliced) Latin Hypercube
                          Designs
  SLIC                    LIC for Distributed Skewed Regression
  SLModels                Stepwise Linear Models for Binary
                          Classification Problems under Youden Index
                          Optimisation
  SLOPE                   Sorted L1 Penalized Estimation
  SLOS                    ICU Length of Stay Prediction and Efficiency
                          Evaluation
  SLPresElection          Presidential Election Data of "Sri Lanka" from
                          1982 to 2015
  SLRMss                  Symmetric Linear Regression Models for Small
                          Samples
  SLSEdesign              Optimal Regression Design under the
                          Second-Order Least Squares Estimator
  SMAHP                   Survival Mediation Analysis of High-Dimensional
                          Proteogenomic Data
  SMARTbayesR             Bayesian Set of Best Dynamic Treatment Regimes
                          and Sample Size in SMARTs for Binary Outcomes
  SMARTp                  Sample Size for SMART Designs in Non-Surgical
                          Periodontal Trials
  SMASH                   Subclone Multiplicity Allocation and Somatic
                          Heterogeneity
  SMDIC                   Identification of Somatic Mutation-Driven
                          Immune Cells
  SMFilter                Filtering Algorithms for the State Space Models
                          on the Stiefel Manifold
  SMLE                    Joint Feature Screening via Sparse MLE
  SMLoutliers             Outlier Detection Using Statistical and Machine
                          Learning Methods
  SMM                     Simulation and Estimation of Multi-State
                          Discrete-Time Semi-Markov and Markov Models
  SMMAL                   Semi-Supervised Estimation of Average Treatment
                          Effects
  SMMT                    The Swiss Municipal Data Merger Tool Maps
                          Municipalities Over Time
  SMNCensReg              Fitting Univariate Censored Regression Model
                          Under the Family of Scale Mixture of Normal
                          Distributions
  SMNlmec                 Scale Mixture of Normal Distribution in Linear
                          Mixed-Effects Model
  SMOTEWB                 Imbalanced Resampling using SMOTE with Boosting
                          (SMOTEWB)
  SMPracticals            Practicals for Use with Davison (2003)
                          Statistical Models
  SMR                     Externally Studentized Midrange Distribution
  SMUT                    Multi-SNP Mediation Intersection-Union Test
  SMVar                   Structural Model for Variances
  SNBdata                 Download Data from the Swiss National Bank
                          (SNB)
  SNFtool                 Similarity Network Fusion
  SNMA                    Stream Network Movement Analyses
  SNPRelate               Parallel Computing Toolset for Relatedness and
                          Principal Component Analysis of SNP Data
  SNPannotator            Automated Functional Annotation of Genetic
                          Variants and Linked Proxies
  SNPassoc                SNPs-Based Whole Genome Association Studies
  SNPfiltR                Interactively Filter SNP Datasets
  SNSFdatasets            Download Datasets from the Swiss National
                          Science Foundation (SNF, FNS, SNSF)
  SNSchart                Sequential Normal Scores in Statistical Process
                          Management
  SNSeg                   Self-Normalization(SN) Based Change-Point
                          Estimation for Time Series
  SNSequate               Standard and Nonstandard Statistical Models and
                          Methods for Test Equating
  SNVLFDR                 Empirical Bayes Single Nucleotide Variant
                          Calling
  SOAR                    Memory Management in R by Delayed Assignments
  SOAs                    Creation of Stratum Orthogonal Arrays
  SOHPIE                  Statistical Approach via Pseudo-Value
                          Information and Estimation
  SOIL                    Sparsity Oriented Importance Learning
  SOMEnv                  SOM Algorithm for the Analysis of Multivariate
                          Environmental Data
  SOMMD                   Self Organising Maps for the Analysis of
                          Molecular Dynamics Data
  SOMbrero                SOM Bound to Realize Euclidean and Relational
                          Outputs
  SOMnmR                  Analysis of Soil Organic Matter using Nuclear
                          Magnetic Resonance
  SONO                    Scores of Nominal Outlyingness (SONO)
  SOP                     Generalised Additive P-Spline Regression Models
                          Estimation
  SOPC                    The Sparse Online Principal Component
                          Estimation Algorithm
  SOR                     Estimation using Sequential Offsetted
                          Regression
  SP2000                  Catalogue of Life Toolkit
  SPACO                   Spatial Component Analysis for Spatial
                          Sequencing Data
  SPADAR                  Spherical Projections of Astronomical Data
  SPARRAfairness          Analysis of Differential Behaviour of SPARRA
                          Score Across Demographic Groups
  SPARTAAS                Statistical Pattern Recognition and daTing
                          using Archaeological Artefacts assemblageS
  SPAtest                 Score Test and Meta-Analysis Based on
                          Saddlepoint Approximation
  SPB                     Simple Progress Bars for Procedural Coding
  SPCALDA                 A New Reduced-Rank Linear Discriminant Analysis
                          Method
  SPCompute               Compute Power or Sample Size for GWAS with
                          Covariate Effect
  SPECIES                 Statistical Package for Species Richness
                          Estimation
  SPECK                   Receptor Abundance Estimation using Reduced
                          Rank Reconstruction and Clustered Thresholding
  SPEDInstabR             Estimation of the Relative Importance of
                          Factors Affecting Species Distribution Based on
                          Stability Concept
  SPEI                    Calculation of the Standardized
                          Precipitation-Evapotranspiration Index
  SPEV                    Unsmoothed and Smoothed Penalized PCA using
                          Nesterov Smoothing
  SPIChanges              Improves the Interpretation of the Standardized
                          Precipitation Index Under Changing Climate
                          Conditions
  SPINA                   Structure Parameter Inference Approach
  SPLICE                  Synthetic Paid Loss and Incurred Cost
                          Experience (SPLICE) Simulator
  SPORTSCausal            Spillover Time Series Causal Inference
  SPOUSE                  Scatter Plots Over-Viewed Using Summary
                          Ellipses
  SPPcomb                 Combining Different Spatial Datasets in Cancer
                          Risk Estimation
  SPREDA                  Statistical Package for Reliability Data
                          Analysis
  SPRT                    Sequential Probability Ratio Test (SPRT) Method
  SPSL                    Site Percolation on Square Lattices (SPSL)
  SPSP                    Selection by Partitioning the Solution Paths
  SPYvsSPY                Spy vs. Spy Data
  SPlit                   Split a Dataset for Training and Testing
  SPreg                   Bias Reduction in the Skew-Probit Model for a
                          Binary Response
  SQI                     Soil Quality Index
  SQIpro                  Comprehensive Soil Quality Index Computation
                          and Visualization
  SQL                     Executes 'SQL' Statements
  SQLFormatteR            Format SQL Queries
  SQLove                  Execute 'SQL' Scripts in 'R' Containing
                          Multiple Queries
  SQMtools                Analyze Results Generated by the 'SqueezeMeta'
                          Pipeline
  SQN                     Subset Quantile Normalization
  SQRL                    Enhances Interaction with 'ODBC' Databases
  SQUAREM                 Squared Extrapolation Methods for Accelerating
                          EM-Like Monotone Algorithms
  SRMData                 Data Files Supporting "Scientific Research and
                          Methodology" by Peter K. Dunn (2025)
  SRMERS                  Semi-Parametric Shape-Restricted Fixed/Mixed
                          Effect(s) Regression Spline
  SRS                     Scaling with Ranked Subsampling
  SRTtools                Adjust Srt File to Get Better Experience when
                          Watching Movie
  SRscore                 Simple Transcriptome Meta-Analysis for
                          Identifying Stress-Responsive Genes
  SSAforecast             SSA Based Decomposition and Forecasting
  SSBtools                Algorithms and Tools for Tabular Statistics and
                          Hierarchical Computations
  SSDM                    Stacked Species Distribution Modelling
  SSDforR                 Functions to Analyze Single System Data
  SSEparser               Parse Server-Sent Events
  SSGL                    Spike-and-Slab Group Lasso for
                          Group-Regularized Generalized Linear Models
  SSHAARP                 Searching Shared HLA Amino Acid Residue
                          Prevalence
  SSIMmap                 The Structural Similarity Index Measure for
                          Maps
  SSLASSO                 The Spike-and-Slab LASSO
  SSLfmm                  Semi-Supervised Learning under a
                          Mixed-Missingness Mechanism in Finite Mixture
                          Models
  SSM                     Fit and Analyze Smooth Supersaturated Models
  SSN2                    Spatial Modeling on Stream Networks
  SSNbayes                Bayesian Spatio-Temporal Analysis in Stream
                          Networks
  SSNbler                 Assemble 'SSN' Objects
  SSOSVM                  Stream Suitable Online Support Vector Machines
  SSP                     Simulated Sampling Procedure for Community
                          Ecology
  SSRA                    Sakai Sequential Relation Analysis
  SSRMST                  Sample Size Calculation using Restricted Mean
                          Survival Time
  SSRTcalc                Easy SSRT Calculation
  SSReliabilityClaytonMWD
                          Stress-Strength Reliability Model with MWD
                          Marginals via Clayton Copula
  SSVS                    Functions for Stochastic Search Variable
                          Selection (SSVS)
  SSplots                 Stock Status Plots (SSPs)
  SSsimple                State Space Models
  STAND                   Statistical Analysis of Non-Detects
  STAREG                  An Empirical Bayes Approach for Replicability
                          Analysis Across Two Studies
  STARTS                  Functions for the STARTS Model
  STARTdesign             Single to Double Arm Transition Design for
                          Phase II Clinical Trials
  STATcubeR               R Interface for the 'STATcube' REST API and
                          Open Government Data
  STB                     Simultaneous Tolerance Bounds
  STCCGEV                 Conditional Copula Model for Crop Yield
                          Forecasting
  STCYP                   Spatio-Temporal Crop Yield Prediction
  STDistance              Spatial Transcriptomics Distance Calculation
                          and Visualization
  STEPCAM                 ABC-SMC Inference of STEPCAM
  STFTS                   Statistical Tests for Functional Time Series
  STICr                   Process Stream Temperature, Intermittency, and
                          Conductivity (STIC) Sensor Data
  STMotif                 Discovery of Motifs in Spatial-Time Series
  STMr                    Strength Training Manual R-Language Functions
  STOPES                  Selection Threshold Optimized Empirically via
                          Splitting
  STPGA                   Selection of Training Populations by Genetic
                          Algorithm
  STREAK                  Receptor Abundance Estimation using Feature
                          Selection and Gene Set Scoring
  STRINGdb                STRINGdb - Protein-Protein Interaction Networks
                          and Functional Enrichment Analysis
  STV                     Single Transferable Vote Counting
  STraTUS                 Enumeration and Uniform Sampling of
                          Transmission Trees for a Known Phylogeny
  SUMMER                  Small-Area-Estimation Unit/Area Models and
                          Methods for Estimation in R
  SUMO                    Generating Multi-Omics Datasets for Testing and
                          Benchmarking
  SUNGEO                  Sub-National Geospatial Data Archive:
                          Geoprocessing Toolkit
  SUSENAS                 National Socio-Economic Survey Data Collection
                          Indonesia
  SUSY                    Surrogate Synchrony
  SVARtca                 Transmission Channel Analysis in Structural VAR
                          Models
  SVAlignR                Recovering Structure of Long Molecules from
                          Structural Variation Data
  SVDMx                   Child/Child-Adult Mortality-Indexed Model
                          Mortality Age Schedules
  SVDNF                   Discrete Nonlinear Filtering for Stochastic
                          Volatility Models
  SVEMnet                 Self-Validated Ensemble Models with Lasso and
                          Relaxed Elastic Net Regression
  SVG                     Spatially Variable Genes Detection Methods for
                          Spatial Transcriptomics
  SVMD                    Spearman Variational Mode Decomposition
  SVMMaj                  Implementation of the SVM-Maj Algorithm
  SVN                     Statistically Validated Networks
  SWMPr                   Retrieving, Organizing, and Analyzing Estuary
                          Monitoring Data
  SWTools                 Helper Tools for Australian Hydrologists
  SYNCSA                  Analysis of Functional and Phylogenetic
                          Patterns in Metacommunities
  SafeVote                Election Vote Counting with Safety Features
  SailoR                  An Extension of the Taylor Diagram to
                          Two-Dimensional Vector Data
  SampleCore              Sampling Strategies for Constructing Core
                          Collections
  SampleSize4ClinicalTrials
                          Sample Size Calculation for the Comparison of
                          Means or Proportions in Phase III Clinical
                          Trials
  SampleSizeCalculator    Sample Size Calculator under Complex Survey
                          Design
  SampleSizeDiagnostics   Choosing Sample Size for Evaluating a
                          Diagnostic Test
  SampleSizeMeans         Sample Size Calculations for Normal Means
  SampleSizeProportions   Calculating Sample Size Requirements when
                          Estimating the Difference Between Two Binomial
                          Proportions
  SampleSizeSingleArmSurvival
                          Calculate Sample Size for Single-Arm Survival
                          Studies
  SamplingBigData         Sampling Methods for Big Data
  SamplingStrata          Optimal Stratification of Sampling Frames for
                          Multipurpose Sampling Surveys
  SanFranBeachWater       Downloads and Tidies the San Francisco Public
                          Utilities Commission Beach Water Quality
                          Monitoring Program Data
  SangerTools             Tools for Population Health Management
                          Analytics
  SaturnCoefficient       Statistical Evaluation of UMAP Dimensionality
                          Reductions
  ScaleSpikeSlab          Scalable Spike-and-Slab
  ScaledMatrix            Creating a DelayedMatrix of Scaled and Centered
                          Values
  Scalelink               Create Scale Linkage Scores
  ScatterDensity          Density Estimation and Visualization of 2D
                          Scatter Plots
  SchoolDataIT            Retrieve, Harmonise and Map Open Data Regarding
                          the Italian School System
  SciViews                SciViews - Main package
  ScoreEB                 Score Test Integrated with Empirical Bayes for
                          Association Study
  ScottKnott              The ScottKnott Clustering Algorithm
  ScottKnottESD           The Scott-Knott Effect Size Difference (ESD)
                          Test
  ScreeNOT                'ScreeNOT': MSE-Optimal Singular Value
                          Thresholding in Correlated Noise
  ScreenClean             Screen and clean variable selection procedures
  ScriptMapR              R Script Visualization in Cytoscape
  SdeaR                   Stochastic Data Envelopment Analysis
  SeBR                    Semiparametric Bayesian Regression Analysis
  SeaGraphs               Sea Currents to Connectivity Transformation
  SeaSondeR               Radial Metrics from SeaSonde HF-Radar Data
  SeaVal                  Validation of Seasonal Weather Forecasts
  SearchTrees             Spatial Search Trees
  SeasEpi                 Spatiotemporal Modeling of Seasonal Infectious
                          Disease
  SecretsProvider         Save and Retrieve Name-Value Pairs to and from
                          a File
  SeedImbibition          Seed Imbibition Percentage
  SeedMaker               Generate a Collection of Seeds from a Single
                          Seed
  SeedVigorIndex          Seed Vigor Index
  SegCorr                 Detecting Correlated Genomic Regions
  SegEnvIneq              Environmental Inequality Indices Based on
                          Segregation Measures
  Sejong                  KoNLP static dictionaries and Sejong project
                          resources.
  SeleMix                 Selective Editing via Mixture Models
  Select                  Determines Species Probabilities Based on
                          Functional Traits
  SelectBoost             A General Algorithm to Enhance the Performance
                          of Variable Selection Methods in Correlated
                          Datasets
  SelectBoost.FDA         SelectBoost-Style Variable Selection for
                          Functional Data Analysis
  SelectBoost.beta        Stability-Selection via Correlated Resampling
                          for Beta-Regression Models
  SelectBoost.gamlss      Stability-Selection via Correlated Resampling
                          for 'GAMLSS' Models
  SelectBoost.quantile    'SelectBoost'-Style Variable Selection for
                          Quantile Regression
  SelectionBias           Calculates Bounds for the Selection Bias for
                          Binary Treatment and Outcome Variables
  SelfControlledCaseSeries
                          Self-Controlled Case Series
  SelfControlledCohort    Self-Controlled Cohort Population-Level
                          Estimation
  SemNeT                  Methods and Measures for Semantic Network
                          Analysis
  SemNetCleaner           An Automated Cleaning Tool for Semantic and
                          Linguistic Data
  SemNetDictionaries      Dictionaries for the 'SemNetCleaner' Package
  SemanticDistance        Compute Semantic Distance Between Text
                          Constituents
  SemiCompRisks           Hierarchical Models for Parametric and
                          Semi-Parametric Analyses of Semi-Competing
                          Risks Data
  SemiMarkov              Multi-States Semi-Markov Models
  SemiPar.depCens         Copula Based Cox Proportional Hazards Models
                          for Dependent Censoring
  SemiparMF               Semiparametric Spatiotemporal Model with Mixed
                          Frequencies
  SenSpe                  Estimating Specificity at Controlled
                          Sensitivity, or Vice Versa
  SenSrivastava           Datasets from Sen & Srivastava
  SensIAT                 Sensitivity Analysis for Irregular Assessment
                          Times
  SensMap                 Sensory and Consumer Data Mapping
  SensitivityCaseControl
                          Sensitivity Analysis for Case-Control Studies
  SensoMineR              Sensory Data Analysis
  SentimentAnalysis       Dictionary-Based Sentiment Analysis
  SepTest                 Tests for First-Order Separability in
                          Spatio-Temporal Point Processes
  SeqAlignR               Sequence Alignment and Visualization Tool
  SeqFeatR                A Tool to Associate FASTA Sequences and
                          Features
  SeqKat                  Detection of Kataegis
  SeqMADE                 Network Module-Based Model in the Differential
                          Expression Analysis for RNA-Seq
  Seqinfo                 A simple S4 class for storing basic information
                          about a collection of genomic sequences
  SequenceSpikeSlab       Exact Bayesian Model Selection Methods for the
                          Sparse Normal Sequence Model
  Sequential              Exact Sequential Analysis for Poisson and
                          Binomial Data
  SequentialDesign        Observational Database Study Planning using
                          Exact Sequential Analysis for Poisson and
                          Binomial Data
  SeroTrackR              Serology-Based Data Analysis and Visualization
  SerolyzeR               Reading, Quality Control and Preprocessing of
                          MBA (Multiplex Bead Assay) Data
  SetMethods              Functions for Set-Theoretic Multi-Method
                          Research and Advanced QCA
  SetTest                 Group Testing Procedures for Signal Detection
                          and Goodness-of-Fit
  Seurat                  Tools for Single Cell Genomics
  SeuratExplorer          An 'Shiny' App for Exploring scRNA-seq Data
                          Processed in 'Seurat'
  SeuratObject            Data Structures for Single Cell Data
  ShapDoE                 Approximation of the Shapley Values Based on
                          Experimental Designs
  ShapeChange             Change-Point Estimation using Shape-Restricted
                          Splines
  ShapePattern            Tools for Analyzing Shapes and Patterns
  ShapeSelectForest       Shape Selection for Landsat Time Series of
                          Forest Dynamics
  ShapleyOutlier          Multivariate Outlier Explanations using Shapley
                          Values and Mahalanobis Distances
  ShapleyValue            Shapley Value Regression for Relative
                          Importance of Attributes
  SharkDemography         Shark Demographic Analyses Using Leslie Matrix
                          Models
  SharpeR                 Statistical Significance of the Sharpe Ratio
  SheetReader             Parse xlsx Files
  ShellChron              Builds Chronologies from Oxygen Isotope
                          Profiles in Shells
  SherlockHolmes          Building a Concordance of Terms in a Series of
                          Texts
  ShiVa                   Detection of Evolutionary Shifts in Both
                          Optimal Value and Variance
  ShiftConvolvePoibin     Exactly Computing the Tail of the
                          Poisson-Binomial Distribution
  ShiftShareSE            Inference in Regressions with Shift-Share
                          Structure
  ShinyBlock              Multi-Protocol Blockchain Simulator and
                          Enterprise Ledger Framework
  ShinyItemAnalysis       Test and Item Analysis via Shiny
  ShinyQuickStarter       'RStudio' Addin for Building Shiny Apps per
                          Drag & Drop
  ShinyWizard             An Interactive Wizard to Design, Build, and
                          Deploy R Packages Demo Presentation
  ShortForm               Automatic Short Form Creation
  ShortRead               FASTQ input and manipulation
  ShrinkCovMat            Shrinkage Covariance Matrix Estimators
  ShrinkageTrees          Bayesian Tree Ensembles for Survival Analysis
                          and Causal Inference
  SiER                    Signal Extraction Approach for Sparse
                          Multivariate Response Regression
  SiFINeT                 Single Cell Feature Identification with Network
                          Topology
  SiMRiv                  Simulating Multistate Movements in
                          River/Heterogeneous Landscapes
  SiPhyNetwork            A Phylogenetic Simulator for Reticulate
                          Evolution
  SiZer                   Significant Zero Crossings
  Sie2nts                 Sieve Methods for Non-Stationary Time Series
  Sieve                   Nonparametric Estimation by the Method of
                          Sieves
  SigBridgeRUtils         Some Utilities & Base Supports for 'SigBridgeR'
  SightabilityModel       Wildlife Sightability Modeling
  Signac                  Analysis of Single-Cell Chromatin Data
  SignacX                 Cell Type Identification and Discovery from
                          Single Cell Gene Expression Data
  SignalY                 Signal Extraction from Panel Data via Bayesian
                          Sparse Regression and Spectral Decomposition
  SignifReg               Consistent Significance Controlled Variable
                          Selection in Generalized Linear Regression
  Silhouette              Proximity Measure Based Diagnostics for
                          Standard, Soft, and Multi-Way Clustering
  SillyPutty              Silly Putty Clustering
  Sim.DiffProc            Simulation of Diffusion Processes
  SimBIID                 Simulation-Based Inference Methods for
                          Infectious Disease Models
  SimBaRepro              Simulation-Based, Finite-Sample Inference via
                          Repro Samples
  SimComp                 Simultaneous Comparisons for Multiple Endpoints
  SimCop                  Simulate from Arbitrary Copulae
  SimCorMultRes           Simulates Correlated Multinomial Responses
  SimCorrMix              Simulation of Correlated Data with Multiple
                          Variable Types Including Continuous and Count
                          Mixture Distributions
  SimDesign               Structure for Organizing Monte Carlo Simulation
                          Designs
  SimDissolution          Modeling and Assessing Similarity of Drug
                          Dissolutions Profiles
  SimEUCartelLaw          Simulation of Legal Exemption System for
                          European Cartel Law
  SimEngine               A Modular Framework for Statistical Simulations
                          in R
  SimIndep                WISE: a Weighted Similarity Aggregation Test
                          for Serial Independence
  SimInf                  A Framework for Data-Driven Stochastic Disease
                          Spread Simulations
  SimJoint                Simulate Joint Distribution
  SimKid                  Simulate Virtual Pediatrics using
                          Anthropometric Growth Charts
  SimMultiCorrData        Simulation of Correlated Data with Multiple
                          Variable Types
  SimNPH                  Simulate Non-Proportional Hazards
  SimRDS                  Simulation of Respondent Driven Samples
  SimReg                  Similarity Regression
  SimSST                  Simulated Stop Signal Task Data
  SimSeq                  Nonparametric Simulation of RNA-Seq Data
  SimSurvey               Test Surveys by Simulating Spatially-Correlated
                          Populations
  SimTOST                 Sample Size Estimation for Bio-Equivalence
                          Trials Through Simulation
  SimTimeVar              Simulate Longitudinal Dataset with Time-Varying
                          Correlated Covariates
  SimVitD                 Simulation Tools for Planning Vitamin D Studies
  SimilarityMeasures      Trajectory Similarity Measures
  Simile                  Interact with Simile Models
  SimpleUpset             Create Upset Plots
  SimplicialComplex       Topological Data Analysis: Simplicial Complex
  SimplicialCubature      Integration of Functions Over Simplices
  SimplyAgree             Flexible and Robust Agreement and Reliability
                          Analyses
  SimtablR                Easy Publication-Ready Tables and Regression
                          Analysis
  SimuRg                  Building, Fitting and Evaluating PK/PD Modeles
  SingleArmMRCT           Regional Consistency Probability for Single-Arm
                          Multi-Regional Clinical Trials
  SingleCaseES            A Calculator for Single-Case Effect Sizes
  SingleCellComplexHeatMap
                          Complex Heatmaps for Single Cell Expression
                          Data with Dual Information Display
  SingleCellExperiment    S4 Classes for Single Cell Data
  SingleCellStat          A Toolkit for Statistical Analysis of
                          Single-Cell Omics Data
  SixSigma                Six Sigma Tools for Quality Control and
                          Improvement
  SkeletalVis             Exploration and Visualisation of Skeletal
                          Transcriptomics Data
  SkewHyperbolic          The Skew Hyperbolic Student t-Distribution
  Skillings.Mack          The Skillings-Mack Test Statistic for Block
                          Designs with Missing Observations
  SleepCycles             Sleep Cycle Detection
  Sleuth2                 Data Sets from Ramsey and Schafer's
                          "Statistical Sleuth (2nd Ed)"
  Sleuth3                 Data Sets from Ramsey and Schafer's
                          "Statistical Sleuth (3rd Ed)"
  SlicedLHD               Sliced Latin Hypercube Designs
  Slick                   Interactive Visualization of MSE Results
  SlideCNA                Calls Copy Number Alterations from Slide-Seq
                          Data
  SlidingWindows          Methods for Time Series Analysis
  SlimR                   Adaptive Machine Learning-Powered,
                          Context-Matching Tool for Single-Cell and
                          Spatial Transcriptomics Annotation
  SlotLim                 Catch Advice for Fisheries Managed by Harvest
                          Slot Limits
  SmCCNet                 Sparse Multiple Canonical Correlation Network
                          Analysis Tool ('SmCCNet')
  SmallCountRounding      Small Count Rounding of Tabular Data
  SmartEDA                Summarize and Explore the Data
  SmartMeterAnalytics     Methods for Smart Meter Data Analysis
  SmartSVA                Fast and Robust Surrogate Variable Analysis
  SmarterPoland           Tools for Accessing Various Datasets Developed
                          by the Foundation SmarterPoland.pl
  SmithWilsonYieldCurve   Smith-Wilson Yield Curve Construction
  SmokingHistoryGenerator
                          R Package for the Smoking History Generator
  SmoothHazard            Estimation of Smooth Hazard Models for
                          Interval-Censored Data
  SmoothPLS               Partial Least-Squares Algorithm for Categorical
                          and Scalar Functional Data
  SmoothWin               Soft Windowing for Linear and Non-Linear Models
  Snake                   Game of Snake
  SnowData                Historical Data from John Snow's 1854 Cholera
                          Outbreak Map
  SnowballC               Snowball Stemmers Based on the C 'libstemmer'
                          UTF-8 Library
  Sobol4R                 Sobol Indices for Models with Fixed and
                          Stochastic Parameters
  Sofi                    Interfaz interactiva con fines didacticos
  SoftBart                Implements the SoftBart Algorithm
  SoftClustering          Soft Clustering Algorithms
  SoilConservation        Soil and Water Conservation
  SoilFDA                 Fractal Dimension Analysis of Soil Particle
                          Size Distribution
  SoilFunctionality       Soil Functionality Measurement
  SoilHyP                 Soil Hydraulic Properties
  SoilManageR             Calculate Soil Management Indicators for
                          Agricultural Practice Assessment
  SoilR                   Models of Soil Organic Matter Decomposition
  SoilSaltIndex           Soil Salinity Indices Generation using
                          Satellite Data
  SoilTaxonomy            A System of Soil Classification for Making and
                          Interpreting Soil Surveys
  SoilTesting             Organic Carbon and Plant Available Nutrient
                          Contents in Soil
  Sojourn                 Apply Sojourn Methods for Processing ActiGraph
                          Accelerometer Data
  Sojourn.Data            Supporting Objects for Sojourn Accelerometer
                          Methods
  SolveSAPHE              Solver Suite for Alkalinity-PH Equations
  SomaDataIO              Input/Output 'SomaScan' Data
  SongEvo                 An Individual-Based Model of Bird Song
                          Evolution
  SorptionAnalysis        Static Adsorption Experiment Plotting and
                          Analysis
  SoundShape              Sound Waves Onto Morphometric Data
  SoundexBR               Phonetic-Coding for Portuguese
  SoupX                   Single Cell mRNA Soup eXterminator
  SouthParkRshiny         Data and 'Shiny' Application for the Show
                          'SouthPark'
  SoyNAM                  Soybean Nested Association Mapping Dataset
  SoyURT                  USDA Northern Region Uniform Soybean Tests
                          Dataset
  SpATS                   Spatial Analysis of Field Trials with Splines
  SpNMF                   Supervised NMF
  SpPOP                   Generation of Spatial Population under
                          Different Levels of Relationships among
                          Variables
  SpTe2M                  Nonparametric Modeling and Monitoring of
                          Spatio-Temporal Data
  SpaCCI                  Spatially Aware Cell-Cell Interaction Analysis
  SpaCOAP                 High-Dimensional Spatial Covariate-Augmented
                          Overdispersed Poisson Factor Model
  SpaDES                  Develop and Run Spatially Explicit Discrete
                          Event Simulation Models
  SpaDES.core             Core Utilities for Developing and Running
                          Spatially Explicit Discrete Event Models
  SpaDES.tools            Additional Tools for Developing Spatially
                          Explicit Discrete Event Simulation (SpaDES)
                          Models
  SpaTopic                Topic Inference to Identify Tissue Architecture
                          in Multiplexed Images
  SpaceTimeBSS            Blind Source Separation for Multivariate
                          Spatio-Temporal Data
  SpadeR                  Species-Richness Prediction and Diversity
                          Estimation with R
  SparseArray             High-performance sparse data representation and
                          manipulation in R
  SparseBiplots           'HJ-Biplot' using Different Ways of
                          Penalization Plotting with 'ggplot2'
  SparseChol              Sparse Matrix C++ Classes Including Sparse
                          Cholesky LDL Decomposition of Symmetric
                          Matrices
  SparseDC                Implementation of SparseDC Algorithm
  SparseFunClust          Sparse Functional Clustering
  SparseGrid              Sparse grid integration in R
  SparseICA               Sparse Independent Component Analysis
  SparseLPM               The Sparse Latent Position Model for
                          Nonnegative Interaction Data
  SparseM                 Sparse Linear Algebra
  SparseMDC               Implementation of SparseMDC Algorithm
  SparseMSE               'Multiple Systems Estimation for Sparse Capture
                          Data'
  SparseTSCGM             Sparse Time Series Chain Graphical Models
  SparseVFC               Sparse Vector Field Consensus for Vector Field
                          Learning
  SpatEntropy             Spatial Entropy Measures
  SpatFD                  Functional Geostatistics: Univariate and
                          Multivariate Functional Spatial Prediction
  SpatGC                  Bayesian Modeling of Spatial Count Data
  SpatGRID                Spatial Grid Generation from Longitude and
                          Latitude List
  SpatMCA                 Regularized Spatial Maximum Covariance Analysis
  SpatPCA                 Regularized Principal Component Analysis for
                          Spatial Data
  SpatialAcc              Spatial Accessibility Measures
  SpatialBSS              Blind Source Separation for Multivariate
                          Spatial Data
  SpatialDownscaling      Methods for Spatial Downscaling Using Deep
                          Learning
  SpatialEpi              Methods and Data for Spatial Epidemiology
  SpatialExperiment       S4 Class for Spatially Resolved -omics Data
  SpatialExtremes         Modelling Spatial Extremes
  SpatialGEV              Fit Spatial Generalized Extreme Value Models
  SpatialGraph            The SpatialGraph Class and Utilities
  SpatialInference        Tools for Statistical Inference with Geo-Coded
                          Data
  SpatialKDE              Kernel Density Estimation for Spatial Data
  SpatialNP               Multivariate Nonparametric Methods Based on
                          Spatial Signs and Ranks
  SpatialPOP              Generation of Spatial Data with Spatially
                          Varying Model Parameter
  SpatialPack             Tools for Assessment the Association Between
                          Two Spatial Processes
  SpatialPosition         Spatial Position Models
  SpatialRDD              Conduct Multiple Types of Geographic Regression
                          Discontinuity Designs
  SpatialRegimes          Spatial Constrained Clusterwise Regression
  SpatialRoMLE            Robust Maximum Likelihood Estimation for
                          Spatial Error Model
  SpatialTools            Tools for Spatial Data Analysis
  SpatialVS               Spatial Variable Selection
  SpatialVx               Spatial Forecast Verification
  Spbsampling             Spatially Balanced Sampling
  SpeTestNP               Non-Parametric Tests of Parametric
                          Specifications
  SpecDetec               Change Points Detection with Spectral
                          Clustering
  SpecHelpers             Spectroscopy Related Utilities
  SpecsVerification       Forecast Verification Routines for Ensemble
                          Forecasts of Weather and Climate
  Spectra                 Spectra Infrastructure for Mass Spectrometry
                          Data
  SpectralClMixed         Spectral Clustering for Mixed Type Data
  Spectran                Visual and Non-Visual Spectral Analysis of
                          Light
  Spectrum                Fast Adaptive Spectral Clustering for Single
                          and Multi-View Data
  SphereOptimize          Optimization on a Unit Sphere
  SphericalCubature       Numerical Integration over Spheres and Balls in
                          n-Dimensions; Multivariate Polar Coordinates
  SpiceFP                 Sparse Method to Identify Joint Effects of
                          Functional Predictors
  Splinets                Functional Data Analysis using Splines and
                          Orthogonal Spline Bases
  SplitGLM                Split Generalized Linear Models
  SplitKnockoff           Split Knockoffs for Structural Sparsity
  SplitReg                Split Regularized Regression
  SplitSplitPlot          Analysis of Split-Split-Plot Experiments
                          (Analise De Experimentos Em Parcela
                          Subsubdividida)
  SplitWise               Hybrid Stepwise Regression with Single-Split
                          Dummy Encoding
  SpoMAG                  Probability of Sporulation Potential in MAGs
  SportMiner              Text Mining and Topic Modeling for Sport
                          Science Literature
  SportsTour              Display Tournament Fixtures using Knock Out and
                          Round Robin Techniques
  Spower                  Power Analyses using Monte Carlo Simulations
  SppTrend                Analyzing Linear Trends in Species Occurrence
                          Data
  SpuriousMemory          Testing True Long Memory Against Spurious Long
                          Memory
  SqlRender               Rendering Parameterized SQL and Translation to
                          Dialects
  SqueakR                 An Experiment Interface for 'DeepSqueak'
                          Bioacoustics Research
  Ssarkartrim             Trimmed-k Mean Estimator
  SscSrs                  Sample Size Calculator for Estimation of
                          Population Mean and Proportion under SRS
  Sshaped                 Nonparametric, Tuning-Free Estimation of
                          S-Shaped Functions
  Sstack                  Bootstrap Stacking of Random Forest Models for
                          Heterogeneous Data
  StAMPP                  Statistical Analysis of Mixed Ploidy
                          Populations
  StMoMo                  Stochastic Mortality Modelling
  StMoSim                 Quantile-Quantile Plot with Several Gaussian
                          Simulations
  StReg                   Student's t Regression Models
  StabilityApp            Stability Analysis App for GEI in
                          Multi-Environment Trials
  StabilizedRegression    Stabilizing Regression and Variable Selection
  StableEstim             Estimate the Four Parameters of Stable Laws
                          using Different Methods
  StablePopulation        Calculates Alpha for a Stable Population
  StackImpute             Tools for Analysis of Stacked Multiple
                          Imputations
  StakeholderAnalysis     Measuring Stakeholder Influence
  StanHeaders             C++ Header Files for Stan
  Stat2Data               Datasets for Stat2
  StatDA                  Statistical Analysis for Environmental Data
  StatDataML              Read and Write StatDataML Files
  StatDeriveR             Step-by-Step Derivation and Simulation
                          Verification in Mathematical Statistics
  StatMatch               Statistical Matching or Data Fusion
  StatPerMeCo             Statistical Performance Measures to Evaluate
                          Covariance Matrix Estimates
  StatRank                Statistical Rank Aggregation: Inference,
                          Evaluation, and Visualization
  StatRec                 A Statistical Method for Multi-Item Rating and
                          Recommendation Problems
  StatTeacherAssistant    An App that Assists Intro Statistics
                          Instructors with Data Sets
  StatTools               All-in-One Chi Distribution CI
  Statamarkdown           'Stata' Markdown
  StateLevelForest        Historical State-Level Forest Cover Data in the
                          United States
  StatisticTeach1         Interactive Tool for Statistics and Probability
  StatsTFLValR            Utilities for Validation of Clinical Trial
                          'SDTM', 'ADaM' and 'TFL' Outputs
  StealLikeBayes          A Compendium of Bayesian Statistical Routines
                          Written in 'C++'
  SteinIV                 Semi-Parametric Stein-Like Estimator with
                          Instrumental Variables
  StemAnalysis            Reconstructing Tree Growth and Carbon
                          Accumulation with Stem Analysis Data
  StempCens               Spatio-Temporal Estimation and Prediction for
                          Censored/Missing Responses
  StepBeta                Stepwise Procedure for Beta, Beta-Binomial and
                          Negative Binomial Regression Models
  StepGWR                 A Hybrid Spatial Model for Prediction and
                          Capturing Spatial Variation in the Data
  StepReg                 Stepwise Regression Analysis
  StepRegShiny            Graphical User Interface for 'StepReg'
  SteppedPower            Power Calculation for Stepped Wedge Designs
  StepwiseTest            Multiple Testing Method to Control Generalized
                          Family-Wise Error Rate and False Discovery
                          Proportion
  StereoMorph             Stereo Camera Calibration and Reconstruction
  SticsRFiles             Read and Modify 'STICS' Input/Output Files
  StochBlock              Stochastic Blockmodeling of One-Mode and Linked
                          Networks
  StochSimR               Stochastic Process Simulation Engine
  StockDistFit            Fit Stock Price Distributions
  Storm                   Write Storm Bolts in R using the Storm
                          Multi-Language Protocol.
  StormR                  Analyzing the Behaviour of Wind Generated by
                          Tropical Storms and Cyclones
  StrainRanking           Ranking of Pathogen Strains
  StratPal                Stratigraphic Paleobiology Modeling Pipelines
  StratSel                Strategic Selection Estimator
  StrathE2E2              End-to-End Marine Food Web Model
  StratifiedBalancing     Stratified Covariate Balancing
  StratifiedMedicine      Stratified Medicine
  StratifiedRF            Builds Trees by Sampling Variables in Groups
  StratifiedSampling      Different Methods for Stratified Sampling
  StratigrapheR           Integrated Stratigraphy
  StreamCatTools          'StreamCatTools'
  StreamMetabolism        Calculate Single Station Metabolism from
                          Diurnal Oxygen Curves
  StressStrength          Computation and Estimation of Reliability of
                          Stress-Strength Models
  String2AdjMatrix        Creates an Adjacency Matrix from a List of
                          Strings
  StroupGLMM              R Codes and Datasets for Generalized Linear
                          Mixed Models: Modern Concepts, Methods and
                          Applications by Walter W. Stroup
  StructuralDecompose     Decomposes a Level Shifted Time Series
  StructureMC             Structured Matrix Completion
  StuteTest               Stute (1997) Linearity Test
  Stype.est               S-Type Estimators
  Styperidge.reg          S-Type Ridge Regression
  SuRF.vs                 Subsampling Ranking Forward Selection (SuRF)
  SubTS                   Positive Tempered Stable Distributions and
                          Related Subordinators
  SubVis                  Visual Exploration of Protein Alignments
                          Resulting from Multiple Substitution Matrices
  SubgrpID                Patient Subgroup Identification for Clinical
                          Drug Development
  SubtypeDrug             Prioritization of Candidate Cancer Subtype
                          Specific Drugs
  SudokuDesigns           Sudoku as an Experimental Design
  SuessR                  Suess and Laws Corrections for Marine Stable
                          Carbon Isotope Data
  SumcaVer1               Mean Square Prediction Error Estimation in
                          Small Area Estimation
  SummarizedExperiment    A container (S4 class) for matrix-like assays
  SunCalcMeeus            Sun Position and Daylight Calculations
  Sunclarco               Survival Analysis using Copulas
  SunsVoc                 Constructing Suns-Voc from Outdoor Time-Series
                          I-V Curves
  SupMZ                   Detecting Structural Change with
                          Heteroskedasticity
  SuperCell               Simplification of scRNA-Seq Data by Merging
                          Together Similar Cells
  SuperExactTest          Exact Test and Visualization of Multi-Set
                          Intersections
  SuperGauss              Superfast Likelihood Inference for Stationary
                          Gaussian Time Series
  SuperLearner            Super Learner Prediction
  SuperRanker             Sequential Rank Agreement
  SuperSurv               A Unified Framework for Machine Learning
                          Ensembles in Survival Analysis
  SuperpixelImageSegmentation
                          Superpixel Image Segmentation
  Superpower              Simulation-Based Power Analysis for Factorial
                          Designs
  SuppDists               Supplementary Distributions
  SurfRough               Calculate Surface/Image Texture Indexes
  SurfaceTortoise         Find Optimal Sampling Locations Based on
                          Spatial Covariate(s)
  SurprisalAnalysis       Information Theoretic Analysis of Gene
                          Expression Data
  Surrogate               Evaluation of Surrogate Endpoints in Clinical
                          Trials
  SurrogateBMA            Flexible Evaluation of Surrogate Markers with
                          Bayesian Model Averaging
  SurrogateOutcome        Estimation of the Proportion of Treatment
                          Effect Explained by Surrogate Outcome
                          Information
  SurrogateParadoxTest    Empirical Testing of Surrogate Paradox
                          Assumptions
  SurrogateRank           Rank-Based Test to Evaluate a Surrogate Marker
  SurrogateRegression     Surrogate Outcome Regression Analysis
  SurrogateSeq            Group Sequential Testing of a Treatment Effect
                          Using a Surrogate Marker
  SurrogateTest           Early Testing for a Treatment Effect using
                          Surrogate Marker Information
  SurvCorr                Correlation of Bivariate Survival Times
  SurvDisc                Discrete Time Survival and Longitudinal Data
                          Analysis
  SurvEval                Methods for the Evaluation of Survival Models
  SurvGME                 Analysis of Survival Data under Graphical and
                          Measurement Error Models
  SurvHiDim               High Dimensional Survival Data Analysis
  SurvImpute              Multiple Imputation for Missing Covariates in
                          Time-to-Event Data
  SurvLong                Analysis of Proportional Hazards Model with
                          Sparse Longitudinal Covariates
  SurvMA                  Model Averaging Prediction of Personalized
                          Survival Probabilities
  SurvMI                  Multiple Imputation Method in Survival Analysis
  SurvMetrics             Predictive Evaluation Metrics in Survival
                          Analysis
  SurvRegCensCov          Weibull Regression for a Right-Censored
                          Endpoint with Interval-Censored Covariate
  SurvSparse              Survival Analysis with Sparse Longitudinal
                          Covariates
  SurvTrunc               Analysis of Doubly Truncated Data
  SurveyCC                Canonical Correlation for Survey Data
  SurveyDefense           Survey Defense Tool
  SurveyStat              Survey Data Cleaning, Weighting and Analysis
  SurviMChd               High Dimensional Survival Data Analysis with
                          Markov Chain Monte Carlo
  SurvivalClusteringTree
                          Clustering Analysis Using Survival Tree and
                          Forest Algorithms
  SurvivalTests           Survival Tests for One-Way Layout
  SveltePlots             A Wrapper for a Svelte Custom Web Component
  SvyNom                  Nomograms for Right-Censored Outcomes from
                          Survey Designs
  SwPcIndex               Computation of Survey Weighted PC Based
                          Composite Index
  SweepDiscovery          Selective Sweep Discovery Tool
  SwimmeR                 Data Import, Cleaning, and Conversions for
                          Swimming Results
  SwissAir                Air Quality Data of Switzerland for One Year in
                          30 Min Resolution
  SyScSelection           Systematic Scenario Selection for Stress
                          Testing
  SymTS                   Symmetric Tempered Stable Distributions
  SynDI                   Synthetic Data Integration
  SyncMove                Subsample Temporal Data to Synchronal Events
                          and Compute the MCI
  SyncRNG                 A Synchronized Tausworthe RNG for R and Python
  SynchWave               Synchrosqueezed Wavelet Transform
  SynergyLMM              Statistical Framework for in Vivo Drug
                          Combination Studies
  Synth                   Synthetic Control Group Method for Comparative
                          Case Studies
  SynthETIC               Synthetic Experience Tracking Insurance Claims
  SynthTools              Tools and Tests for Experiments with Partially
                          Synthetic Data Sets
  Sysrecon                Systematical Metabolic Reconstruction
  SystemicR               Monitoring Systemic Risk
  T2DFitTailor            Tailor the Exercise Plans and Visualize the
                          Outcome for T2D Patients
  T2EQ                    Functions for Applying the T^2-Test for
                          Equivalence
  T2Qv                    Control Qualitative Variables
  T4cluster               Tools for Cluster Analysis
  T4transport             Tools for Computational Optimal Transport
  TAD                     Realize the Trait Abundance Distribution
  TAF                     Transparent Assessment Framework for
                          Reproducible Research
  TAG                     Transformed Additive Gaussian Processes
  TAM                     Test Analysis Modules
  TANDEM                  A Two-Stage Approach to Maximize
                          Interpretability of Drug Response Models Based
                          on Multiple Molecular Data Types
  TAQMNGR                 Manage Tick-by-Tick Transaction Data
  TAR                     Bayesian Modeling of Autoregressive Threshold
                          Time Series Models
  TAShiny                 'Text Analyzer Shiny'
  TBA                     Collection of 'shiny' Apps for Tree Breeding
                          Analysis
  TBEST                   Tree Branches Evaluated Statistically for
                          Tightness
  TBFmultinomial          TBF Methodology Extension for Multinomial
                          Outcomes
  TBRDist                 Rearrangement Distances Between Phylogenetic
                          Trees
  TBox                    Useful Functions for Programming and Generating
                          Documents
  TCA                     Tensor Composition Analysis
  TCGAretriever           Retrieve Genomic and Clinical Data from
                          CBioPortal Including TCGA Data
  TCGAutils               TCGA utility functions for data management
  TCHazaRds               Tropical Cyclone (Hurricane, Typhoon) Spatial
                          Hazard Modelling
  TCIApathfinder          Client for the Cancer Imaging Archive REST API
  TCIU                    Spacekime Analytics, Time Complexity and
                          Inferential Uncertainty
  TCRconvertR             Convert TCR Gene Names
  TCseq                   Time course sequencing data analysis
  TDA                     Statistical Tools for Topological Data Analysis
  TDAkit                  Toolkit for Topological Data Analysis
  TDApplied               Machine Learning and Inference for Topological
                          Data Analysis
  TDAstats                Pipeline for Topological Data Analysis
  TDAvec                  Vector Summaries of Persistence Diagrams
  TDCM                    The Transition Diagnostic Classification Model
                          Framework
  TDCor                   Gene Network Inference from Time-Series
                          Transcriptomic Data
  TDIagree                Assessment of Agreement using the Total
                          Deviation Index
  TDLM                    Systematic Comparison of Trip Distribution Laws
                          and Models
  TDPanalysis             Granier's Sap Flow Sensors (TDP) Analysis
  TDSTNN                  Time Delay Spatio Temporal Neural Network
  TDbook                  Companion Package for the Book "Data
                          Integration, Manipulation and Visualization of
                          Phylogenetic Trees" by Guangchuang Yu (2022,
                          ISBN:9781032233574)
  TDboost                 A Boosted Tweedie Compound Poisson Model
  TELP                    Social Representation Theory Application: The
                          Free Evocation of Words Technique
  TEQR                    Target Equivalence Range Design
  TExPosition             Two-Table ExPosition
  TFBSTools               Software Package for Transcription Factor
                          Binding Site (TFBS) Analysis
  TFMPvalue               Efficient and Accurate P-Value Computation for
                          Position Weight Matrices
  TFORGE                  Tests for Geophysical Eigenvalues
  TFRE                    A Tuning-Free Robust and Efficient Approach to
                          High-Dimensional Regression
  TFactSR                 Enrichment Approach to Predict Which
                          Transcription Factors are Regulated
  TFisher                 Optimal Thresholding Fisher's P-Value
                          Combination Method
  TFunHDDC                Clustering of Functional Data via Mixtures of
                          t-Distributions
  TGS                     Rapid Reconstruction of Time-Varying Gene
                          Regulatory Networks
  TGST                    Targeted Gold Standard Testing
  TH.data                 TH's Data Archive
  THETASVM                Time Series Forecasting using THETA-SVM Hybrid
                          Model
  THREC                   Tree Height Response Calibration for Swedish
                          Forests
  TICM                    Testing the Validity of the Independent
                          Component Model Assumption
  TIGERr                  Technical Variation Elimination with Ensemble
                          Learning Architecture
  TIMP                    Fitting Separable Nonlinear Models in
                          Spectroscopy and Microscopy
  TITAN2                  Threshold Indicator Taxa Analysis
  TITEgBOIN               Time-to-Event Dose-Finding Design for Multiple
                          Toxicity Grades
  TKCat                   Tailored Knowledge Catalog
  TLCAR                   Computation of Topp-Leone Cauchy Rayleigh
                          (TLCAR ) distribution's properties
  TLIC                    The LIC for T Distribution Regression Analysis
  TLMoments               Calculate TL-Moments and Convert Them to
                          Distribution Parameters
  TMB                     Template Model Builder: A General Random Effect
                          Tool Inspired by 'ADMB'
  TMDb                    Access to TMDb API
  TML                     Tropical Geometry Tools for Machine Learning
  TMTI                    Too Many, Too Improbable (TMTI) Test Procedures
  TNC                     Temporal Network Centrality (TNC) Measures
  TNRS                    Taxonomic Name Resolution Service
  TOC                     Total Operating Characteristic Curve and ROC
                          Curve
  TOHM                    Testing One Hypothesis Multiple Times
  TORDs                   Third Order Rotatable Designs (TORDs)
  TOSI                    Two-Directional Simultaneous Inference for
                          High-Dimensional Models
  TOSTER                  Two One-Sided Tests (TOST) Equivalence Testing
  TOU                     Transformed Ornstein-Uhlenbeck Model for
                          Adsorption Kinetics
  TPAC                    Tissue-Adjusted Pathway Analysis of Cancer
                          (TPAC)
  TPACData                Human Protein Atlas Data for Tissue-Adjusted
                          Pathway Analysis of Cancer (TPAC)
  TPD                     Methods for Measuring Functional Diversity
                          Based on Trait Probability Density
  TPDDev                  Tool for Construction of Two-Phase Experimental
                          Designs
  TPEA                    A Novel Topology-Based Pathway Enrichment
                          Analysis Approach
  TPES                    Tumor Purity Estimation using SNVs
  TPLSr                   Thresholded Partial Least Squares Model for
                          Neuroimaging Data
  TPXG                    Two Parameter Xgamma & Poisson Xgamma:
                          Regression & Distribution Functions
  TPmsm                   Estimation of Transition Probabilities in
                          Multistate Models
  TR8                     A Tool for Downloading Functional Traits Data
                          for Plant Species
  TRADER                  Tree Ring Analysis of Disturbance Events in R
  TRAMPR                  'TRFLP' Analysis and Matching Package for R
  TRD                     Transmission Ratio Distortion
  TREDesigns              Ternary Residual Effect Designs
  TRES                    Tensor Regression with Envelope Structure
  TRexSelector            T-Rex Selector: High-Dimensional Variable
                          Selection & FDR Control
  TSA                     Time Series Analysis
  TSANN                   Time Series Artificial Neural Network
  TSCAN                   Tools for Single-Cell Analysis
  TSCI                    Tools for Causal Inference with Possibly
                          Invalid Instrumental Variables
  TSCS                    Time Series Cointegrated System
  TSDFGS                  Training Set Determination for Genomic
                          Selection
  TSDT                    Treatment-Specific Subgroup Detection Tool
  TSE                     Total Survey Error
  TSEAL                   Time Series Analysis Library
  TSEind                  Total Survey Error (Independent Samples)
  TSEntropies             Time Series Entropies
  TSEtools                Manage Data from the Finance Markets
  TSEwgt                  Total Survey Error Under Multiple, Different
                          Weighting Schemes
  TSF                     Two Stage Forecasting (TSF) for Long Memory
                          Time Series in Presence of Structural Break
  TSGS                    Trait Specific Gene Selection using SVM and GA
  TSGSIS                  Two Stage-Grouped Sure Independence Screening
  TSHRC                   Two Stage Hazard Rate Comparison
  TSLA                    Tree-Guided Rare Feature Selection and Logic
                          Aggregation
  TSLSTM                  Long Short Term Memory (LSTM) Model for Time
                          Series Forecasting
  TSLSTMplus              Long-Short Term Memory for Time-Series
                          Forecasting, Enhanced
  TSMCP                   Fast Two Stage Multiple Change Point Detection
  TSP                     Infrastructure for the Traveling Salesperson
                          Problem
  TSPred                  Functions for Benchmarking Time Series
                          Prediction
  TSQCA                   DEPRECATED: Threshold Sweep Extensions for
                          Qualitative Comparative Analysis
  TSS.RESTREND            Time Series Segmentation of Residual Trends
  TSSS                    Time Series Analysis with State Space Model
  TSSVM                   Time Series Forecasting using SVM Model
  TSTutorial              Fitting and Predict Time Series Interactive
                          Laboratory
  TSVC                    Tree-Structured Modelling of Varying
                          Coefficients
  TSdeeplearning          Deep Learning Model for Time Series Forecasting
  TSdisaggregation        High-Dimensional Temporal Disaggregation
  TSeriesMMA              Multiscale Multifractal Analysis of Time Series
                          Data
  TSrepr                  Time Series Representations
  TSsmoothing             Trend Estimation of Univariate and Bivariate
                          Time Series with Controlled Smoothness
  TSstudio                Functions for Time Series Analysis and
                          Forecasting
  TTAinterfaceTrendAnalysis
                          Temporal Trend Analysis Graphical Interface
  TTCA                    Transcript Time Course Analysis
  TTR                     Technical Trading Rules
  TTR.PGM                 Thornley Transport Resistance Plant Growth
                          Model
  TTS                     Master Curve Estimates Corresponding to
                          Time-Temperature Superposition
  TUFLOWR                 Helper Functions for 'TUFLOW FV' Models
  TUGLab                  A Laboratory for TU Games
  TULIP                   A Toolbox for Linear Discriminant Analysis with
                          Penalties
  TUWmodel                Lumped/Semi-Distributed Hydrological Model for
                          Education Purposes
  TUvalues                Tools for Calculating Allocations in Game
                          Theory using Exact and Approximated Methods
  TVMM                    Multivariate Tests for the Vector of Means
  TVMVP                   Time-Varying Minimum Variance Portfolio
  TWW                     Growth Models
  Taba                    Taba Robust Correlations
  Table1Heatmap           Table 1 Heatmap
  TableContainer          Create a Table with Row, Column, and Table
                          Annotations
  TableMonster            Table Monster
  TableToLongForm         Automatically Convert Hierarchical for-Human
                          Tables to Machine-Readable LongForm Dataframes
  TailClassifier          Tail Classifier
  TailID                  Detect Sensitive Points in the Tail
  TailRank                The Tail-Rank Statistic
  TangledFeatures         Feature Selection in Highly Correlated Spaces
  TapeR                   Flexible Tree Taper Curves Based on
                          Semiparametric Mixed Models
  TapeS                   Tree Taper Curves and Sorting Based on 'TapeR'
  Tariff                  Replicate Tariff Method for Verbal Autopsy
  TauStar                 Efficient Computation and Testing of the
                          Bergsma-Dassios Sign Covariance
  TaxaNorm                Feature-Wise Normalization for Microbiome
                          Sequencing Data
  TaxicabCA               Taxicab Correspondence Analysis
  TaylorRussell           A Taylor-Russell Function for Multiple
                          Predictors
  TcGSA                   Time-Course Gene Set Analysis
  Tcomp                   Data from the 2010 Tourism Forecasting
                          Competition
  TeXCheckR               Parses LaTeX Documents for Errors
  TeachHist               A Collection of Amended Histograms Designed for
                          Teaching Statistics
  TeachingDemos           Demonstrations for Teaching and Learning
  TeachingSampling        Selection of Samples and Parameter Estimation
                          in Finite Population
  Tejapi                  API Wrapper for Taiwan Economic Journal Data
                          Service
  TempStable              A Collection of Methods to Estimate Parameters
                          of Different Tempered Stable Distributions
  Temporal                Parametric Time to Event Analysis
  TemporalForest          Network-Guided Temporal Forests for Feature
                          Selection in High-Dimensional Longitudinal Data
  TemporalGSSA            Outputs Temporal Profile of Molecules from
                          Stochastic Simulation Algorithm Generated
                          Datasets
  TemporalHazard          Temporal Parametric Hazard Modeling
  TensorClustering        Model-Based Tensor Clustering
  TensorMCMC              Tensor Regression with Stochastic Low-Rank
                          Updates
  TensorPreAve            Rank and Factor Loadings Estimation in Time
                          Series Tensor Factor Models
  TensorTest2D            Fitting Second-Order Tensor Data
  TernTables              Automated Statistical Analysis and Table
                          Generation for Biomedical Research
  Ternary                 Create Ternary and Holdridge Plots
  TesiproV                Reliability Analysis Methods for Structural
                          Engineering
  TestAnaAPP              A 'shiny' App for Test Analysis and
                          Visualization
  TestCor                 FWER and FDR Controlling Procedures for
                          Multiple Correlation Tests
  TestDataImputation      Missing Item Responses Imputation for Test and
                          Assessment Data
  TestDesign              Optimal Test Design Approach to Fixed and
                          Adaptive Test Construction
  TestDimorph             Analysis of the Interpopulation Difference in
                          Degree of Sexual Dimorphism Using Summary
                          Statistics
  TestFunctions           Test Functions for Simulation Experiments and
                          Evaluating Optimization and Emulation
                          Algorithms
  TestGardener            Information Analysis for Test and Rating Scale
                          Data
  TestGenerator           Integration Unit Tests for
                          Pharmacoepidemiological Studies
  TestIndVars             Testing the Independence of Variables for
                          Specific Covariance Structures
  TestNet                 A Method for Inferring Microbial Networks with
                          FDR Control
  TestScorer              GUI for Entering Test Items and Obtaining Raw
                          and Transformed Scores
  TestingSimilarity       Bootstrap Test for the Similarity of Dose
                          Response Curves Concerning the Maximum Absolute
                          Deviation
  TestsSymmetry           Tests for Symmetry when the Center of Symmetry
                          is Unknown
  Tex4exams               Generating 'Sweave' Code for 'R/exams'
                          Questions in Mathematics
  TexExamRandomizer       Personalizes and Randomizes Exams Written in
                          'LaTeX'
  TextMiningGUI           Text Mining GUI Interface
  ThSQCA                  Threshold-Sweep QCA
  TheOpenAIR              Integrate 'OpenAI' Large Language Models into
                          Your 'R' Workflows
  TheSFACE                The Subtype Free Average Causal Effect
  ThermIndex              Calculate Thermal Indexes
  ThermalSampleR          Calculate Sample Sizes Required for Critical
                          Thermal Limits Experiments
  Thermimage              Thermal Image Analysis
  TheseusPlot             Visualizing Decomposition of Differences in
                          Rate Metrics
  ThinkingGrid            Thinking Grid Statistics
  ThomasJeffersonUniv     Handy Tools for TJU/TJUH Employees
  ThreeGroups             ML Estimator for Baseline-Placebo-Treatment
                          (Three-Group) Experiments
  ThreeWay                Three-Way Component Analysis
  ThreeWiseMonkeys        The Japanese Pictorial Maxim "See No Evil, Hear
                          No Evil, Speak No Evil"
  Thresher                Threshing and Reaping for Principal Components
  ThresholdROC            Optimum Threshold Estimation
  ThresholdROCsurvival    Diagnostic Ability Assessment with
                          Right-Censored Data at a Fixed Time t
  ThurMod                 Thurstonian CFA and Thurstonian IRT Modeling
  TiPS                    Trajectories and Phylogenies Simulator
  TideCurves              Analysis and Prediction of Tides
  TideHarmonics           Harmonic Analysis of Tides
  TideTables              Tide Analysis and Prediction of Predominantly
                          Semi-Diurnal Tides
  Tides                   Quasi-Periodic Time Series Characteristics
  TidyConsultant          Tidy Consultant Universe
  TidyDensity             Functions for Tidy Analysis and Generation of
                          Random Data
  TidyMultiqc             Converts 'MultiQC' Reports into Tidy Data
                          Frames
  TidyPanel               Universal Messy Panel Data Cleaner
  TimeDepFrail            Time Dependent Shared Frailty Cox Model
  TimeTraits              Functional Data Analysis Pipeline, Extracting
                          Functional Traits from Biological Time-Series
                          Data
  TimeVarConcurrentModel
                          Concurrent Multivariate Models with
                          Time-Varying Coefficients
  TimeVizPro              Dynamic Data Explorer: Visualize and Forecast
                          with 'TimeVizPro'
  Tinflex                 A Universal Non-Uniform Random Number Generator
  TipDatingBeast          Using Tip Dates with Phylogenetic Trees in
                          BEAST
  Tivy                    Toolkit for Investigation and Visualization of
                          Young Anchovies
  TmCalculator            Genome-Wide Nucleic Acid Melting Temperature
                          Profiling and Multi-Omics Integration
  Tmisc                   Turner Miscellaneous
  TooManyCellsR           An R Wrapper for 'TooManyCells'
  ToolsForCoDa            Multivariate Tools for Compositional Data
                          Analysis
  Toothnroll              Dental Tissues Landmarking Measuring and
                          Mapping
  TopDom                  An Efficient and Deterministic Method for
                          Identifying Topological Domains in Genomes
  TopKLists               Inference, Aggregation and Visualization for
                          Top-K Ranked Lists
  TopKSignal              A Convex Optimization Tool for Signal
                          Reconstruction from Multiple Ranked Lists
  TopSisWM                Multi-Criteria Method for Decision (TOPSIS)
  TopicScore              The Topic SCORE Algorithm to Fit Topic Models
  TopicTestlet            A Topic Testlet Model for Calibrating Testlet
                          Constructed Responses
  TotalCopheneticIndex    Quantify the Balance of Phylogenetic Trees
  ToxCrit                 Calculates Safety Stopping Boundaries for a
                          Single-Arm Trial using Bayes
  Tplyr                   A Traceability Focused Grammar of Clinical Data
                          Summary
  TraMineR                Trajectory Miner: a Sequence Analysis Toolkit
  TraMineRextras          TraMineR Extension
  TraceAssist             Nonparametric Trace Regression via Sign Series
                          Representation
  TrackReconstruction     Reconstruct Animal Tracks from Magnetometer,
                          Accelerometer, Depth and Optional Speed Data
  TrackTrap               Model Cumulative Growing Degree-Days for Pest
                          Monitoring
  Trading                 Trade Objects, Advanced Correlation & Beta
                          Estimates, Betting Strategies
  TrafficBDE              Traffic Predictions Using Neural Networks
  TrajectoryUtils         Single-Cell Trajectory Analysis Utilities
  TransHDM                High-Dimensional Mediation Analysis via
                          Transfer Learning
  TransModel              Fit Linear Transformation Models for Right
                          Censored Data
  TransP                  Implementation of Transportation Problem
                          Algorithms
  TransProR               Analysis and Visualization of Multi-Omics Data
  Transform               Statistical Transformations
  Transition              Characterise Transitions in Test Result Status
                          in Longitudinal Studies
  Tratamentos.ad          Pacote Para Analise De Experimentos Com
                          Testemunhas Adicionais
  TreatmentPatterns       Analyzes Real-World Treatment Patterns of a
                          Study Population of Interest
  TreeBUGS                Hierarchical Multinomial Processing Tree
                          Modeling
  TreeDep                 Air Pollution Removal by Dry Deposition on
                          Trees
  TreeDiagram             Tree Diagram
  TreeDimensionTest       Trajectory Presence and Heterogeneity in
                          Multivariate Data
  TreeDist                Calculate and Map Distances Between
                          Phylogenetic Trees
  TreeMineR               Tree-Based Scan Statistics
  TreeOrderTests          Tests for Tree Ordered Alternatives in One-Way
                          ANOVA
  TreeRingShape           Recording Tree-Ring Shapes of Tree Disks with
                          Manual Digitizing and Interpolating Model
  TreeSearch              Phylogenetic Analysis with Discrete Character
                          Data
  TreeSim                 Simulating Phylogenetic Trees
  TreeSimGM               Simulating Phylogenetic Trees under General
                          Bellman Harris and Lineage Shift Model
  TreeSummarizedExperiment
                          TreeSummarizedExperiment: a S4 Class for Data
                          with Tree Structures
  TreeTools               Create, Modify and Analyse Phylogenetic Trees
  TrenchR                 Tools for Microclimate and Biophysical Ecology
  TrendInTrend            Odds Ratio Estimation and Power Calculation for
                          the Trend in Trend Model
  TrendLSW                Wavelet Methods for Analysing Locally
                          Stationary Time Series
  TrendTM                 Trend of High-Dimensional Time Series Matrix
                          Estimation
  Trendtwosub             Two Sample Order Free Trend Nonparametric
                          Inference
  Tri.Hierarchical.IBDs   Tri-Hierarchical IBDs (Tri- Hierarchical
                          Incomplete Block Designs)
  TriLLIEM                Log-Linear Modelling of Triad Genotype Data
  TriMatch                Propensity Score Matching of Non-Binary
                          Treatments
  TriadSim                Simulating Triad Genomewide Genotypes
  TrialEmulation          Causal Analysis of Observational Time-to-Event
                          Data
  TrialSimulator          Clinical Trial Simulator
  TrialSize               R Functions for Chapter
                          3,4,6,7,9,10,11,12,14,15 of Sample Size
                          Calculation in Clinical Research
  TrioSGL                 Trio Model with a Combination of Lasso and
                          Group Lasso Regularization
  TripleR                 Social Relation Model (SRM) Analyses for Single
                          or Multiple Groups
  TropFishR               Tropical Fisheries Analysis
  TroublemakeR            Generates Spatial Problems in R for 'AMPL'
  TrtCombo.FactorialExp.SR
                          Generation of Treatment Combination (in
                          Standard Order) in 2^n Factorial Experiment
  TrueSkillThroughTime    Skill Estimation Based on a Single Bayesian
                          Network
  TrueWAP                 True Range-Weighted Average Price ('TrueWAP')
  TrumpetPlots            Visualization of Genetic Association Studies
  TruncExpFam             Truncated Exponential Family
  TruncatedNormal         Truncated Multivariate Normal and Student
                          Distributions
  TruncatedPCQM           Density Estimation for Point-Centered Quarter
                          Method with Truncated Sampling
  TrustworthyMLR          Stability and Robustness Evaluation for Machine
                          Learning Models
  Ts                      Calculation of the Surface Temperature (Ts)
                          from Geospatial Raster Data
  TukeyC                  Conventional Tukey Test
  TukeyGH77               Tukey g-&-h Distribution
  TunePareto              Multi-Objective Parameter Tuning for
                          Classifiers
  TurtleGraphics          Turtle Graphics
  Tushare                 Interface to 'Tushare Pro' API
  TwoDcDAPSA              Calculate TwoDcDAPSA: PROs-Joint Contrast (PJC)
                          and Swollen–Tender Joints Contrast (STC) Scores
                          and Quartiles
  TwoDiRef                Robust Estimation of Conditional 2D Reference
                          Regions
  TwoPhaseCorR            Construct Two-Phase Experimental Designs with
                          Correlated Errors
  TwoRegression           Develop and Apply Two-Regression Algorithms
  TwoSampleTest.HD        A Two-Sample Test for the Equality of
                          Distributions for High-Dimensional Data
  TwoStepCLogit           Conditional Logistic Regression: A Two-Step
                          Estimation Method
  TwoStepSDFM             Estimate a Sparse Mixed Frequency Gaussian
                          Factor Model Using a Two-Step Procedure
  TwoTimeScales           Analysis of Event Data with Two Time Scales
  TwoWayFEWeights         Estimation of the Weights Attached to the
                          Two-Way Fixed Effects Regressions
  TxEffectsSurvival       Treatment Effect Inference for Terminal and
                          Non-Terminal Events under Competing Risks
  UAHDataScienceO         Educational Outlier Detection Algorithms with
                          Step-by-Step Tutorials
  UAHDataScienceSC        Learn Supervised Classification Methods Through
                          Examples and Code
  UAHDataScienceSF        Interactive Statistical Learning Functions
  UAHDataScienceUC        Learn Clustering Techniques Through Examples
                          and Code
  UBCRM                   Simulate and Conduct Dose-Escalation Phase I
                          Studies
  UBStats                 Basic Statistics
  UBayFS                  A User-Guided Bayesian Framework for Ensemble
                          Feature Selection
  UCR.ColumnNames         Fixes Column Names for Uniform Crime Report
                          "Offenses Known and Clearance by Arrest"
                          Datasets
  UCSC.utils              Low-level utilities to retrieve data from the
                          UCSC Genome Browser
  UCSCXenaShiny           Interactive Analysis of UCSC Xena Data
  UCSCXenaTools           Download and Explore Datasets from UCSC Xena
                          Data Hubs
  UCell                   Rank-based signature enrichment analysis for
                          single-cell data
  UComp                   Automatic Univariate Time Series Modelling of
                          many Kinds
  UEI                     Compute Uniform Error Index
  UGarima                 The Unit-Garima Distribution
  UHM                     Unified Zero-Inflated Hurdle Regression Models
  UKFE                    UK Flood Estimation
  UKgrid                  The UK National Electricity Transmission System
                          Dataset
  UNCOVER                 Utilising Normalisation Constant Optimisation
                          via Edge Removal (UNCOVER)
  UNPaC                   Non-Parametric Cluster Significance Testing
                          with Reference to a Unimodal Null Distribution
  UPCM                    Uncertainty in Partial Credit Models
  UPG                     Efficient Bayesian Algorithms for Binary and
                          Categorical Data Regression Models
  UPSvarApprox            Approximate the Variance of the
                          Horvitz-Thompson Total Estimator
  URooTab                 Tabular Reporting of 'EViews' Unit Root Tests
  USA.state.boundaries    WGS84 Datum Map of the USA, Including Puerto
                          Rico and the U.S. Virgin Islands
  USAboundaries           Historical and Contemporary Boundaries of the
                          United States of America
  USE                     Uniform Sampling of the Environmental Space
  USP                     U-Statistic Permutation Tests of Independence
                          for all Data Types
  USgas                   The Demand for Natural Gas in the US
  USgrid                  The Demand and Supply for Electricity in the US
  USpopcenters            United States Centers of Population (Centroids)
  UStatBookABSC           A Companion Package to the Book "U-Statistics,
                          M-Estimation and Resampling"
  UVdose                  Estimate Ambient UV Dose from Location and Date
                          Info
  UWHAM                   Unbinned Weighted Histogram Analysis Method
                          (UWHAM)
  UdderQuarterInfectionData
                          Udder Quarter Infection Data
  Ultimixt                Bayesian Analysis of Location-Scale Mixture
                          Models using a Weakly Informative Prior
  Umatrix                 Visualization of Structures in High-Dimensional
                          Data
  Umoments                Unbiased Central Moment Estimates
  Umpire                  Simulating Realistic Gene Expression and
                          Clinical Data
  UncDecomp               Uncertainty Decomposition
  UniExactFunTest         Uniform Exact Functional Tests for Contingency
                          Tables
  Unico                   Unified Cross-Omics Deconvolution
  Unicode                 Unicode Data and Utilities
  UnifiedDoseFinding      Dose-Finding Methods for Non-Binary Outcomes
  UniprotR                Retrieving Information of Proteins from Uniprot
  UnitCircle              Check if Roots of a Polynomial Lie Outside the
                          Unit Circle
  UnitMix                 Detecting Measurement-Unit Errors via Gaussian
                          Mixture Models
  UnitStat                Performs Unit Root Test Statistics
  UnivRNG                 Univariate Pseudo-Random Number Generation
  UniversalCVI            Hard and Soft Cluster Validity Indices
  UnplanSimon             Methods for Managing Enrollment Deviation in
                          Simon's Two-Stage Design
  UpAndDownPlots          Displays Percentage and Absolute Changes
  UpDown                  Detecting Group Disturbances from Longitudinal
                          Observations
  UpSetR                  A More Scalable Alternative to Venn and Euler
                          Diagrams for Visualizing Intersecting Sets
  Upsilon                 Another Test of Association for Count Data
  UsingR                  Data Sets, Etc. for the Text "Using R for
                          Introductory Statistics", Second Edition
  V8                      Embedded JavaScript and WebAssembly Engine for
                          R
  VALERIE                 Visualising Splicing at Single-Cell Resolution
  VALIDICLUST             VALID Inference for Clusters Separation Testing
  VAM                     Variance-Adjusted Mahalanobis
  VAR.etp                 VAR Modelling: Estimation, Testing, and
                          Prediction
  VAR.spec                Allows Specifying a Bivariate VAR (Vector
                          Autoregression) with Desired Spectral
                          Characteristics
  VARSELECTEXPOSURE       Variable Selection Methods Including an
                          Exposure Variable
  VARcheck                Visual Diagnostic Checks for Vector
                          Autoregressive Models
  VARcpDetectOnline       Sequential Change Point Detection for
                          High-Dimensional VAR Models
  VARshrink               Shrinkage Estimation Methods for Vector
                          Autoregressive Models
  VARtests                Bootstrap Tests for Cointegration and
                          Autocorrelation in VARs
  VBLPCM                  Variational Bayes Latent Position Cluster Model
                          for Networks
  VBMS                    Variational Bayesian Algorithm for Multi-Source
                          Heterogeneous Models
  VBV                     The Generalized Berlin Method for Time Series
                          Decomposition
  VBel                    Variational Bayes for Fast and Accurate
                          Empirical Likelihood Inference
  VBphenoR                Variational Bayes for Latent Patient Phenotypes
                          in EHR
  VBsparsePCA             The Variational Bayesian Method for Sparse PCA
  VC2copula               Extend the 'copula' Package with Families and
                          Models from 'VineCopula'
  VCA                     Variance Component Analysis
  VCBART                  Fit Varying Coefficient Models with Bayesian
                          Additive Regression Trees
  VDAP                    Peptide Array Analysis Tools
  VDJgermlines            Variable, Diversity and Joining Sequences from
                          Various Species
  VDPO                    Working with and Analyzing Functional Data of
                          Varying Lengths
  VDSM                    Visualization of Distribution of Selected Model
  VDSPCalibration         Statistical Methods for Designing and Analyzing
                          a Calibration Study
  VEwaning                Vaccine Efficacy Over Time
  VEwaningVariant         Vaccine Efficacy Over Time - Variant Aware
  VFP                     Variance Function Program
  VFS                     Vegetated Filter Strip and Erosion Model
  VGAM                    Vector Generalized Linear and Additive Models
  VGAMdata                Data Supporting the 'VGAM' Package
  VGAMextra               Additions and Extensions of the 'VGAM' Package
  VIC5                    The Variable Infiltration Capacity (VIC)
                          Hydrological Model
  VICatMix                Variational Mixture Models for Clustering
                          Categorical Data
  VIGoR                   Variational Bayesian Inference for Genome-Wide
                          Regression
  VIM                     Visualization and Imputation of Missing Values
  VIMPS                   Calculate Variable Importance with Knock Off
                          Variables
  VIMean                  Variability Independent of Mean
  VIProDesign             A Comprehensive Tool for Protein Design
  VIRF                    Computation of Volatility Impulse Response
                          Function of Multivariate Time Series
  VLF                     Frequency Matrix Approach for Assessing Very
                          Low Frequency Variants in Sequence Records
  VLMC                    Variable Length Markov Chains ('VLMC') Models
  VLMCX                   Variable Length Markov Chain with Exogenous
                          Covariates
  VLTimeCausality         Variable-Lag Time Series Causality Inference
                          Framework
  VMDML                   Variational Mode Decomposition Based Machine
                          Learning Models
  VMDecomp                Variational Mode Decomposition
  VOSONDash               User Interface for Collecting and Analysing
                          Social Networks
  VOWR                    Vital Operational Waiting Risk for Healthcare
                          Systems
  VPdtw                   Variable Penalty Dynamic Time Warping
  VSOLassoBag             Variable Selection Oriented LASSO Bagging
                          Algorithm
  VSURF                   Variable Selection Using Random Forests
  VTShiny                 Interactive Document for Working with Variance
                          Analysis
  VWPre                   Tools for Preprocessing Visual World Data
  VaRES                   Computes Value at Risk and Expected Shortfall
                          for over 100 Parametric Distributions
  ValidationExplorer      Simulation-Based Tools for Bioacoustic Study
                          Design
  VancouvR                Access the 'City of Vancouver' Open Data API
  VarED                   Variance Estimation using Difference-Based
                          Methods
  VarRedOpt               A Framework for Variance Reduction
  VarReg                  Semi-Parametric Variance Regression
  VarSelLCM               Variable Selection for Model-Based Clustering
                          of Mixed-Type Data Set with Missing Values
  VariableScreening       High-Dimensional Screening for Semiparametric
                          Longitudinal Regression
  VariableSelection       Select Variables for Linear Models
  VarianceGamma           The Variance Gamma Distribution
  VariantAnnotation       Annotation of Genetic Variants
  VecDep                  Measuring Copula-Based Dependence Between
                          Random Vectors
  VeccTMVN                Multivariate Normal Probabilities using Vecchia
                          Approximation
  VectorCodeR             Easily Analyze Your Gait Patterns Using Vector
                          Coding Technique
  VectorForgeML           High-Performance Machine Learning Framework
                          with C++ Acceleration
  VectrixDB               Lightweight Vector Database with Embedded
                          Machine Learning Models
  VedicDateTime           Vedic Calendar System
  VegSpecIndex            Vegetation and Spectral Indices for
                          Environmental Assessment
  VennDiagram             Generate High-Resolution Venn and Euler Plots
  VennItem                Generate Venn Diagrams with Items Listed in the
                          Sections
  VertexSimilarity        Creates Vertex Similarity Matrix for an
                          Undirected Graph
  VertexWiseR             Simplified Vertex-Wise Analyses of Whole-Brain
                          and Subcortical Surface
  VeryLargeIntegers       Store and Operate with Arbitrarily Large
                          Integers
  VetResearchLMM          Linear Mixed Models - An Introduction with
                          Applications in Veterinary Research
  ViSe                    Visualizing Sensitivity
  Vicus                   Exploiting Local Structures to Improve
                          Network-Based Analysis of Biological Data
  ViewPipeSteps           Create View Tabs of Pipe Chains
  ViewR                   Advanced Interactive Data Tables and Data
                          Explorer
  VineCopula              Statistical Inference of Vine Copulas
  ViralEntropR            A Computational Pipeline for Entropy-Informed
                          Detection of Emerging Viral Variants
  ViroReportR             Respiratory Viral Infection Forecast Reporting
  VirtualPop              Simulation of Populations by Sampling
                          Waiting-Time Distributions
  Virusparies             Visualize and Process Output from
                          'VirusHunterGatherer'
  VisCollin               Visualizing Collinearity Diagnostics
  VisCov                  Visualizing of Distributions of Covariance
                          Matrices
  VisitorCounts           Modeling and Forecasting Visitor Counts Using
                          Social Media
  VisualDom               Visualize Dominant Variables in Wavelet
                          Multiple Correlation
  Visualize.CRAN.Downloads
                          Visualize Downloads from 'CRAN' Packages
  VisualizeSimon2Stage    Visualize Simon's Two-Stage Design
  VizModules              Flexible, Interactive 'shiny' Modules for
                          Almost Any Plot
  VizTest                 Optimal Confidence Intervals for Visual Testing
  VoronoiBiomedPlot       Tesselation Visualization Plots for 2D Data
  Voss                    Generic Voss Algorithm (Random Sequential
                          Additions)
  VoxR                    Trees Geometry and Morphology from Unstructured
                          TLS Data
  VsusP                   Variable Selection using Shrinkage Priors
  VulnToolkit             Analysis of Tidal Datasets
  W2CWM2C                 A Graphical Tool for Wavelet (Cross)
                          Correlation and Wavelet Multiple (Cross)
                          Correlation Analysis
  W3CMarkupValidator      R Interface to W3C Markup Validation Services
  W4MRUtils               Useful Functions for Harmonized W4M Tool
                          Development
  WA                      While-Alive Loss Rate for Recurrent Event in
                          the Presence of Death
  WACS                    Multivariate Weather-State Approach
                          Conditionally Skew-Normal Generator
  WALS                    Weighted-Average Least Squares Model Averaging
  WARDEN                  Workflows for Health Technology Assessments in
                          R using Discrete EveNts
  WARN                    Weaning Age Reconstruction with Nitrogen
                          Isotope Analysis
  WASP                    Wavelet System Prediction
  WAnova                  Welch's Anova from Summary Statistics
  WAreg                   While-Alive Regression for Composite Endpoints
                          with Cluster-Robust Inference
  WBI                     Wasserstein Bipolarization Index
  WCE                     Weighted Cumulative Exposure Models
  WCM                     Water Cloud Model (WCM) for the Simulation of
                          Leaf Area Index (LAI) and Soil Moisture (SM)
                          from Microwave Backscattering
  WCRBayesDesign          Bayesian Two-Stage Design with Window-Cohort
                          and Controlled Roll-on for Time-to-Event
                          Estimand
  WCluster                Clustering and PCA with Weights, and Data
                          Nuggets Clustering
  WDI                     World Development Indicators and Other World
                          Bank Data
  WData                   Statistical Inference for Weighted Data
  WEGE                    A Metric to Rank Locations for Biodiversity
                          Conservation
  WGCNA                   Weighted Correlation Network Analysis
  WH                      Enhanced Implementation of Whittaker-Henderson
                          Smoothing
  WHORiskCalculator       WHO Cardiovascular Disease Risk Calculator
  WINS                    The R WINS Package
  WIPF                    Weighted Iterative Proportional Fitting
  WLogit                  Variable Selection in High-Dimensional Logistic
                          Regression Models using a Whitening Approach
  WLreg                   Regression Analysis Based on Win Loss Endpoints
  WMAP                    Weighted Meta-Analysis with Pseudo-Populations
  WMWssp                  Wilcoxon-Mann-Whitney Sample Size Planning
  WOAkMedoids             Whale Optimization Algorithm for K-Medoids
                          Clustering
  WOTPLY                  Plot Connectivity Between Cells from Different
                          Time Points
  WPKDE                   Weighted Piecewise Kernel Density Estimation
  WQM                     Wavelet-Based Quantile Mapping for
                          Postprocessing Numerical Weather Predictions
  WR                      Win Ratio Analysis of Composite Time-to-Event
                          Outcomes
  WRI                     Wasserstein Regression and Inference
  WRS2                    A Collection of Robust Statistical Methods
  WRSS                    Water Resources System Simulator
  WRTDStidal              Weighted Regression for Water Quality
                          Evaluation in Tidal Waters
  WRestimates             Sample Size, Power and CI for the Win Ratio
  WSCdata                 A New Four-Arm Within-Study Comparison Data on
                          Math and Vocabulary Training
  WVPlots                 Common Plots for Analysis
  WWGbook                 Functions and Datasets for WWGbook
  WaMaSim                 Simulate Rehabilitation Strategies for Water
                          Distribution Systems
  WallomicsData           Datasets for Multi-Omics Integration in a Plant
                          Abiotic Stress Context
  WarnEpi                 A Comprehensive Tool for Early Warning in
                          Infectious Disease
  WaterBalanceR           Calculate High Resolution Water Balance of
                          Starch Potatoes
  Wats                    Wrap Around Time Series Graphics
  WaveST                  Wavelet-Based Spatial Time Series Models
  WaveSampling            Weakly Associated Vectors (WAVE) Sampling
  WaveletANN              Wavelet ANN Model
  WaveletArima            Wavelet-ARIMA Model for Time Series Forecasting
  WaveletComp             Computational Wavelet Analysis
  WaveletETS              Wavelet Based Error Trend Seasonality Model
  WaveletGARCH            Fit the Wavelet-GARCH Model to Volatile Time
                          Series Data
  WaveletGBM              Wavelet Based Gradient Boosting Method
  WaveletKNN              Wavelet Based K-Nearest Neighbor Model
  WaveletLSTM             Wavelet Based LSTM Model
  WaveletML               Wavelet Decomposition Based Hybrid Machine
                          Learning Models
  WaveletMLbestFL         The Best Wavelet Filter-Level for Prepared
                          Wavelet-Based Models
  WaveletRF               Wavelet-RF Hybrid Model for Time Series
                          Forecasting
  WaveletSVR              Wavelet-SVR Hybrid Model for Time Series
                          Forecasting
  WaverideR               Extracting Signals from Wavelet Spectra
  WayFindR                Computing Graph Structures on WikiPathways
  Waypoint                Convert, Validate, Format and Print Geographic
                          Coordinates and Waypoints
  Wcompo                  Semiparametric Proportional Means Regression of
                          Weighted Composite Endpoint
  WeMix                   Weighted Mixed-Effects Models Using Multilevel
                          Pseudo Maximum Likelihood Estimation
  WeatherSentiment        Comprehensive Analysis of Tweet Sentiments and
                          Weather Data
  WebAnalytics            Web Server Log Analysis
  WebGestaltR             Gene Set Analysis Toolkit WebGestaltR
  WebPower                Basic and Advanced Statistical Power Analysis
  WeibullFit              Fits and Plots a Dataset to the Weibull
                          Probability Distribution Function
  WeibullModiAMR          Fit Modified Weibull-Type Distributions
  WeibullR                Weibull Analysis for Reliability Engineering
  WeibullR.ALT            Accelerated Life Testing Using 'WeibullR'
  WeightCraft             Portfolio Choice: Estimation, Construction, and
                          Evaluation
  WeightIt                Weighting for Covariate Balance in
                          Observational Studies
  WeightMyItems           An Item Weighting Method for Item Response
                          Matrices
  WeightSVM               Subject Weighted Support Vector Machines
  WeightedCluster         Clustering of Weighted Data
  WeightedEnsemble        Weighted Ensemble for Hybrid Model
  WeightedPortTest        Weighted Portmanteau Tests for Time Series
                          Goodness-of-Fit
  WeightedROC             Fast, Weighted ROC Curves
  WeightedTreemaps        Generate and Plot Voronoi or Sunburst Treemaps
                          from Hierarchical Data
  Westerlund              Panel Cointegration Tests Based on Westerlund
                          (2007)
  WgtEff                  Functions for Weighting Effects
  WhatIf                  Software for Evaluating Counterfactuals
  WhatsR                  Parsing, Anonymizing and Visualizing Exported
                          'WhatsApp' Chat Logs
  WhiteLabRt              Novel Methods for Reproduction Number
                          Estimation, Back-Calculation, and Forecasting
  WhiteStripe             White Matter Normalization for Magnetic
                          Resonance Images
  WienR                   Derivatives of the First-Passage Time Density
                          and Cumulative Distribution Function, and
                          Random Sampling from the (Truncated)
                          First-Passage Time Distribution
  WikipediR               A MediaWiki API Wrapper
  WinRatio                Win Ratio for Prioritized Outcomes and 95%
                          Confidence Interval
  WindCurves              Tool to Fit Wind Turbine Power Curves
  WoodSimulatR            Generate Simulated Sawn Timber Strength Grading
                          Data
  WoodburyMatrix          Fast Matrix Operations via the Woodbury Matrix
                          Identity
  WordListsAnalytics      Multiple Data Analysis Tools for Property
                          Listing Tasks
  WordOfMouth             Estimates Economic Variables for
                          Word-of-Mouth-Campaigns
  WordPools               Word Pools Used in Studies of Learning and
                          Memory
  WordR                   Rendering Word Documents with R Inline Code
  WorldFlora              Standardize Plant Names According to World
                          Flora Online Taxonomic Backbone
  WorldMapR               Worldwide or Coordinates-Based Heat Maps
  WormTensor              A Clustering Method for Time-Series Whole-Brain
                          Activity Data of 'C. elegans'
  WpProj                  Linear p-Wasserstein Projections
  WrensBookshelf          A Collection of Palettes and Some Functions to
                          Help Use Them
  WrightMap               IRT Item-Person Map with 'ConQuest' Integration
  WriteXLS                Cross-Platform Perl Based R Function to Create
                          Excel 2003 (XLS) and Excel 2007 (XLSX) Files
  WtTopsis                Weighted Method for Multiple-Criteria Decision
                          Making
  WufooR                  R Wrapper for the 'Wufoo.com' - The Form
                          Building Service
  XDNUTS                  Discontinuous Hamiltonian Monte Carlo with
                          Varying Trajectory Length
  XGeoRTR                 Backend-Neutral Explainable Geometry State and
                          Operators
  XICOR                   Association Measurement Through Cross Rank
                          Increments
  XKCDdata                Get XKCD Comic Data
  XLConnect               Excel Connector for R
  XLS                     A Modeling Approach that Optimizes Future
                          Errors in Least Squares
  XML                     Tools for Parsing and Generating XML Within R
                          and S-Plus
  XML2R                   Easier XML Data Collection
  XNomial                 Exact Goodness-of-Fit Test for Multinomial Data
                          with Fixed Probabilities
  XOMultinom              Exact Distributions of Some Functions of the
                          Ordered Multinomial Counts
  XR                      A Structure for Interfaces from R
  XRSCC                   Statistical Quality Control Simulation
  XSRecencyX              HIV Incidence Estimation using Recency Testing
                          Data with Population Adjustment
  XVector                 Foundation of external vector representation
                          and manipulation in Bioconductor
  XYomics                 Analysis of Sex Differences in Omics Data for
                          Complex Diseases
  Xcertainty              Estimating Lengths and Uncertainty from
                          Photogrammetric Imagery
  XiMpLe                  A Simple XML Tree Parser and Generator
  Xplortext               Statistical Analysis of Textual Data
  YEAB                    Analyze Data from Analysis of Behavior
                          Experiments
  YPInterimTesting        Interim Monitoring Using Adaptively Weighted
                          Log-Rank Test in Clinical Trials
  YPmodel                 The Short-Term and Long-Term Hazard Ratio Model
                          for Survival Data
  YPmodelPhreg            The Short-Term and Long-Term Hazard Ratio Model
                          with Proportional Adjustment
  YTAnalytics             Wrapper for 'YouTube Analytics' API
  YaleToolkit             Data Exploration Tools from Yale University
  YangHuiMagic            A Generalization of Yang Hui's Magic Squares
  YatchewTest             Yatchew (1997), De Chaisemartin &
                          D'Haultfoeuille (2024) Linearity Test
  YatesAlgo.FactorialExp.SR
                          Yates' Algorithm in 2^n Factorial Experiment
  YieldCurve              Modelling and Estimation of the Yield Curve
  Ymisc                   Miscellaneous Functions
  Z10                     Simple Ecological Statistics from the NEON
                          Network
  ZEP                     Procedures Related to the Zadeh's Extension
                          Principle for Fuzzy Data
  ZIBR                    A Zero-Inflated Beta Random Effect Model
  ZIDW                    Zero-Inflated Discrete Weibull Models
  ZIHINAR1                Zero-Inflated and Hurdle INAR(1) Models
  ZIM                     Zero-Inflated Models for Count Time Series with
                          Excess Zeros
  ZIM4rv                  Gene‐based Association Tests of Zero‐inflated
                          Count Phenotype for Rare Variants
  ZINAR1                  Simulates ZINAR(1) Model and Estimates Its
                          Parameters Under Frequentist Approach
  ZINARp                  Simulate INAR/ZINAR(p) Models and Estimate Its
                          Parameters
  ZIPBayes                Bayesian Methods in the Analysis of
                          Zero-Inflated Poisson Model
  ZIPFA                   Zero Inflated Poisson Factor Analysis
  ZIPG                    Zero-Inflated Poisson-Gamma Regression
  ZIprop                  Permutations Tests and Performance Indicator
                          for Zero-Inflated Proportions Response
  ZLAvian                 Zipf's Law of Abbreviation in Animal
                          Vocalisations
  ZRA                     Dynamic Plots for Time Series Forecasting
  ZVCV                    Zero-Variance Control Variates
  ZeroOneDists            One Zero Statistical Distributions
  ZetaSuite               Analyze High-Dimensional High-Throughput
                          Dataset and Quality Control Single-Cell RNA-Seq
  ZonationR               Interface to 'Zonation' for Reproducible
                          Prioritization Workflows
  ZooID                   Load, Segment and Classify Zooplankton Images
  Zseq                    Integer Sequence Generator
  a11yShiny               Accessibility Enhancements to Popular R Shiny
                          Functions
  a4Core                  Automated Affymetrix Array Analysis Core
                          Package
  a5R                     'A5' Discrete Global Grid System
  aIc                     Testing for Compositional Pathologies in
                          Datasets
  aLBI                    Estimating Length-Based Indicators for Fish
                          Stock
  aMNLFA                  Automated Moderated Nonlinear Factor Analysis
                          Using 'M-plus'
  aNCA                    (Pre-)Clinical NCA in a Dynamic Shiny App
  aPCoA                   Covariate Adjusted PCoA Plot
  aRD                     Adjusted Risk Differences via Specifically
                          Penalized Likelihood
  aRpsDCA                 Arps Decline Curve Analysis in R
  aRtsy                   Generative Art with 'ggplot2'
  aRxiv                   Interface to the arXiv API
  aSPU                    Adaptive Sum of Powered Score Test
  aTSA                    Alternative Time Series Analysis
  aVirtualTwins           Adaptation of Virtual Twins Method from Jared
                          Foster
  aae.pop                 Flexible Population Dynamics Simulations
  aamatch                 Artless Automatic or Artful Multivariate
                          Matching for Observational Studies
  abasequence             Coding 'ABA' Patterns for Sequence Data
  abba                    Batch Execution of R Programs on 'Kubernetes',
                          'SLURM', and 'Posit Workbench'
  abbreviate              Readable String Abbreviation
  abc                     Tools for Approximate Bayesian Computation
                          (ABC)
  abc.data                Data Only: Tools for Approximate Bayesian
                          Computation (ABC)
  abcel                   Empirical Likelihood-Based Approximate Bayesian
                          Computation
  abclass                 Angle-Based Classification
  abcrf                   Approximate Bayesian Computation via Random
                          Forests
  abcrlda                 Asymptotically Bias-Corrected Regularized
                          Linear Discriminant Analysis
  abctools                Tools for ABC Analyses
  abd                     The Analysis of Biological Data
  abdiv                   Alpha and Beta Diversity Measures
  abe                     Augmented Backward Elimination
  aberrance               Detect Aberrant Behavior in Test Data
  abess                   Fast Best Subset Selection
  abglasso                Adaptive Bayesian Graphical Lasso
  abima                   Adaptive Bootstrap Inference for Mediation
                          Analysis with Enhanced Statistical Power
  abind                   Combine Multidimensional Arrays
  abjData                 Databases Used Routinely by the Brazilian
                          Jurimetrics Association
  abjutils                Useful Tools for Jurimetrical Analysis Used by
                          the Brazilian Jurimetrics Association
  ablasso                 Arellano-Bond LASSO Estimator for Dynamic
                          Linear Panel Models
  abms                    Augmented Bayesian Model Selection for
                          Regression Models
  abn                     Modelling Multivariate Data with Additive
                          Bayesian Networks
  abodOutlier             Angle-Based Outlier Detection
  abseil                  'C++' Header Files from 'Abseil'
  absorber                Variable Selection in Nonparametric Models
                          using B-Splines
  abstr                   R Interface to the A/B Street Transport System
                          Simulation Software
  abstractr               An R-Shiny Application for Creating Visual
                          Abstracts
  abtest                  Bayesian A/B Testing
  abundant                High-Dimensional Principal Fitted Components
                          and Abundant Regression
  abwm                    Ansari-Bradley Test with Arbitrarily Missing
                          Data
  academictwitteR         Access the Twitter Academic Research Product
                          Track V2 API Endpoint
  acc                     Exploring Accelerometer Data
  accSDA                  Accelerated Sparse Discriminant Analysis
  acca                    A Canonical Correlation Analysis with
                          Inferential Guaranties
  accbaseballr            ACC Baseball Datasets with Advanced Sabermetric
                          Metrics
  accelEE                 Predict Energy Expenditure from Accelerometer
                          Data
  accelmissing            Missing Value Imputation for Accelerometer Data
  accept                  The Acute COPD Exacerbation Prediction Tool
                          (ACCEPT)
  accessibility           Transport Accessibility Measures
  accessr                 Command Line Tools to Produce Accessible
                          Documents using 'R Markdown'
  accessrmd               Improving the Accessibility of 'rmarkdown'
                          Documents
  accrual                 Bayesian Accrual Prediction
  accrualPlot             Accrual Plots and Predictions for Clinical
                          Trials
  accucor                 Natural Abundance Correction of Mass
                          Spectrometer Data
  accumulate              Split-Apply-Combine with Dynamic Groups
  acdcR                   Agro-Climatic Data by County
  acdcquery               Query the Attentional Control Data Collection
                          or the Truth Effect Database
  ace2fastq               ACE File to FASTQ Converter
  aceEditor               The 'Ace' Editor as a HTML Widget
  acebayes                Optimal Bayesian Experimental Design using the
                          ACE Algorithm
  acepack                 ACE and AVAS for Selecting Multiple Regression
                          Transformations
  acfMPeriod              Robust Estimation of the ACF from the
                          M-Periodogram
  achieveGap              Modeling Achievement Gap Trajectories with
                          Hierarchical Penalized Splines
  acid                    Analysing Conditional Income Distributions
  acled.api               Automated Retrieval of ACLED Conflict Event
                          Data
  acledR                  Manipulate ACLED Data
  aclhs                   Autocorrelated Conditioned Latin Hypercube
                          Sampling
  acmgscaler              Variant Effect Calibration to ACMG/AMP Evidence
                          Strength
  acnr                    Annotated Copy-Number Regions
  acoRn                   Exclusion-Based Parentage Assignment Using
                          Multilocus Genotype Data
  acopula                 Modelling Dependence with Multivariate Archimax
                          (or any User-Defined Continuous) Copulas
  acro                    A Tool for Semi-Automating the Statistical
                          Disclosure Control of Research Outputs
  acroname                Engine for Acronyms and Initialisms
  acsmoe                  Propagate Uncertainty for ACS Tabular Estimates
  acss                    Algorithmic Complexity for Short Strings
  acss.data               Data Only: Algorithmic Complexity of Short
                          Strings (Computed via Coding Theorem Method)
  act                     Aligned Corpus Toolkit
  actLifer                Creating Actuarial Life Tables
  actel                   Acoustic Telemetry Data Analysis
  actfts                  Autocorrelation Tools Featured for Time Series
  actigraph.sleepr        Detect Periods of Sleep and Non-Wear in
                          'ActiGraph' Data
  actilifecounts          Generate Activity Counts from Raw Accelerometer
                          Data
  activAnalyzer           A 'Shiny' App to Analyze Accelerometer-Measured
                          Daily Physical Behavior Data
  activPAL                Advanced Processing and Chart Generation from
                          activPAL Events Files
  activatr                Utilities for Parsing and Plotting Activities
  activity                Animal Activity Statistics
  activityCounts          Generate ActiLife Counts
  actogrammr              Read in Activity Data and Plot Actograms
  actuaRE                 Handling Single-Level and Hierarchically
                          Structured Risk Factors using Credibility and
                          Random Effects Models
  actuar                  Actuarial Functions and Heavy Tailed
                          Distributions
  actuary                 Actuarial Functions and Utilities
  actuaryr                Develop Actuarial Models
  actxps                  Create Actuarial Experience Studies: Prepare
                          Data, Summarize Results, and Create Reports
  acumos                  'Acumos' R Interface
  ada                     The R Package Ada for Stochastic Boosting
  adaR                    A Fast 'WHATWG' Compliant URL Parser
  adabag                  Applies Multiclass AdaBoost.M1, SAMME and
                          Bagging
  adace                   Estimator of the Adherer Average Causal Effect
  adagio                  Discrete and Global Optimization Routines
  adamethods              Archetypoid Algorithms and Anomaly Detection
  adana                   Adaptive Nature-Inspired Algorithms for Hybrid
                          Genetic Optimization
  adaplots                Ada-Plot and Uda-Plot for Assessing
                          Distributional Attributes and Normality
  adapt3                  Adaptive Dynamics and Community Matrix Model
                          Projections
  adapt4pv                Adaptive Approaches for Signal Detection in
                          Pharmacovigilance
  adaptDiag               Bayesian Adaptive Designs for Diagnostic Trials
  adaptIVPT               Adaptive Bioequivalence Design for In-Vitro
                          Permeation Tests
  adaptMCMC               Implementation of a Generic Adaptive Monte
                          Carlo Markov Chain Sampler
  adaptTest               Adaptive Two-Stage Tests
  adaptalint              Check Code Style Painlessly
  adaptiveGPCA            Adaptive Generalized PCA
  adaptivetau             Tau-Leaping Stochastic Simulation
  adaptr                  Adaptive Trial Simulator
  adaptsmoFMRI            Adaptive Smoothing of FMRI Data
  adas.utils              Design of Experiments and Factorial Plans
                          Utilities
  adass                   Adaptive Smoothing Spline (AdaSS) Estimator for
                          the Function-on-Function Linear Regression
  adbcdrivermanager       'Arrow' Database Connectivity ('ADBC') Driver
                          Manager
  adbcpostgresql          'Arrow' Database Connectivity ('ADBC')
                          'PostgreSQL' Driver
  adbcsqlite              'Arrow' Database Connectivity ('ADBC') 'SQLite'
                          Driver
  adbi                    'DBI' Compliant Database Access Using 'ADBC'
  adc                     Calculate Antecedent Discharge Conditions
  add2ggplot              Add to 'ggplot2'
  addhaz                  Binomial and Multinomial Additive Hazard Models
  addhazard               Fit Additive Hazards Models for Survival
                          Analysis
  addinsJoaoMelo          Addins Made of Joao Melo
  addinsOutline           'RStudio' Addins for Show Outline of a R
                          Markdown/'LaTeX' Project
  addinslist              Discover and Install Useful RStudio Addins
  additive                Bindings for Additive TidyModels
  additivityTests         Additivity Tests in the Two Way Anova with
                          Single Sub-Class Numbers
  addreg                  Additive Regression for Discrete Data
  ade4                    Analysis of Ecological Data: Exploratory and
                          Euclidean Methods in Environmental Sciences
  ade4TkGUI               'ade4' Tcl/Tk Graphical User Interface
  adea                    Alternate DEA Package
  adegenet                Exploratory Analysis of Genetic and Genomic
                          Data
  adegraphics             An S4 Lattice-Based Package for the
                          Representation of Multivariate Data
  adehabitatHR            Home Range Estimation
  adehabitatHS            Analysis of Habitat Selection by Animals
  adehabitatLT            Analysis of Animal Movements
  adehabitatMA            Tools to Deal with Raster Maps
  adelie                  Group Lasso and Elastic Net Solver for
                          Generalized Linear Models
  adephylo                Exploratory Analyses for the Phylogenetic
                          Comparative Method
  adepro                  A 'shiny' Application for the
                          (Audio-)Visualization of Adverse Event Profiles
  adeptdata               Accelerometry Data Sets
  adespatial              Multivariate Multiscale Spatial Analysis
  adestr                  Estimation in Optimal Adaptive Two-Stage
                          Designs
  adfExplorer             Access and Manipulate Amiga Disk Files
  adformR                 Get Adform Ads Data via the 'Windsor.ai' API
  adheRenceRX             Assess Medication Adherence from Pharmaceutical
                          Claims Data
  adimpro                 Adaptive Smoothing of Digital Images
  adiv                    Analysis of Diversity
  adj                     Lightweight Adjacency Lists
  adjROC                  Computing Sensitivity at a Fix Value of
                          Specificity and Vice Versa as Well as Bootstrap
                          Metrics for ROC Curves
  adjSURVCI               Parameter and Adjusted Probability Estimation
                          for Right-Censored Data
  adjclust                Adjacency-Constrained Clustering of a
                          Block-Diagonal Similarity Matrix
  adjoin                  Constructing Adjacency Matrices Based on
                          Spatial and Feature Similarity
  adjustedCurves          Confounder-Adjusted Survival Curves and
                          Cumulative Incidence Functions
  adjustedcranlogs        Remove Automated and Repeated Downloads from
                          'RStudio' 'CRAN' Download Logs
  adjustr                 Stan Model Adjustments and Sensitivity Analyses
                          using Importance Sampling
  adklakedata             Adirondack Long-Term Lake Data
  adlift                  An Adaptive Lifting Scheme Algorithm
  admiral                 ADaM in R Asset Library
  admiral.test            Test Data for the 'admiral' Package
  admiraldev              Utility Functions and Development Tools for the
                          Admiral Package Family
  admiralmetabolic        Metabolism Extension Package for ADaM in 'R'
                          Asset Library
  admiralneuro            Neuroscience Extension Package for ADaM in 'R'
                          Asset Library
  admiralonco             Oncology Extension Package for ADaM in 'R'
                          Asset Library
  admiralophtha           ADaM in R Asset Library - Ophthalmology
  admiralpeds             Pediatrics Extension Package for ADaM in 'R'
                          Asset Library
  admiralvaccine          Vaccine Extension Package for ADaM in 'R' Asset
                          Library
  admisc                  Adrian Dusa's Miscellaneous
  admix                   Package Admix for Admixture (aka Contamination)
                          Models
  admixr                  An Interface for Running 'ADMIXTOOLS' Analyses
  admixr2                 Aggregate Data Modelling
  admmDensestSubmatrix    Alternating Direction Method of Multipliers to
                          Solve Dense Dubmatrix Problem
  admtools                Estimate and Manipulate Age-Depth Models
  adnuts                  No-U-Turn MCMC Sampling for 'ADMB' Models
  adobeanalyticsr         R Client for 'Adobe Analytics' API 2.0
  adoptr                  Adaptive Optimal Two-Stage Designs
  adplots                 Ad-Plot and Ud-Plot for Visualizing
                          Distributional Properties and Normality
  adproclus               Additive Profile Clustering Algorithms
  adpss                   Design and Analysis of Locally or Globally
                          Efficient Adaptive Designs
  adrftools               Estimating, Visualizing, and Testing Average
                          Dose-Response Functions
  ads                     Spatial Point Patterns Analysis
  adsDataHubR             Google Ads Data Hub API Client
  adsasi                  Adaptive Sample Size Simulator
  adsoRptionCMF           Classical Model Fitting of Adsorption Isotherms
  adsoRptionCV            Cross-Validation Methods for Adsorption
                          Isotherm Models
  adsoRptionMCMC          Bayesian Estimation of Adsorption Isotherms via
                          MCMC
  adventr                 Interactive R Tutorials to Accompany Field
                          (2016), "An Adventure in Statistics"
  adverbial               Enhanced Adverbial Functions
  adw                     Angular Distance Weighting Interpolation
  adwave                  Wavelet Analysis of Genomic Data from Admixed
                          Populations
  aebdata                 Access Data from the Atlas do Estado Brasileiro
  aeddo                   Automated and Early Detection of Disease
                          Outbreaks
  aedl                    Almost-Exact Inference for the
                          DerSimonian-Laird Test Statistic
  aedseo                  Automated and Early Detection of Seasonal
                          Epidemic Onset and Burden Levels
  aelab                   Data Processing for Aquatic Ecology
  aemo                    Download Australian Energy Market Operator Data
  aesopR                  Tools for Text Analysis of Aesop's Fables
  afc                     Generalized Discrimination Score
  afcharts                Produce Charts Following UK Government Analysis
                          Function Guidance
  afcolours               Government Analysis Function Recommended
                          Accessible Colour Palette
  afdx                    Diagnosis Performance Using Attributable
                          Fraction
  afex                    Analysis of Factorial Experiments
  affiner                 A Finer Way to Render 3D Illustrated Objects in
                          'grid' Using Affine Transformations
  affinity                Raster Georeferencing, Grid Affine Transforms,
                          Cell Abstraction
  affinitymatrix          Estimation of Affinity Matrix
  affluenceIndex          Affluence (Richness) Indices
  affxparser              Affymetrix File Parsing SDK
  affy                    Methods for Affymetrix Oligonucleotide Arrays
  affyPLM                 Methods for fitting probe-level models
  affyio                  Tools for parsing Affymetrix data files
  afmToolkit              Functions for Atomic Force Microscope
                          Force-Distance Curves Analysis
  afmpar                  Check Validity of Greek AFM and PA Numbers
  afpt                    Tools for Modelling of Animal Flight
                          Performance
  africamonitor           Africa Macroeconomic Monitor Database API
  aftPenCDA               Estimating Penalized AFT Models via Coordinate
                          Descent
  aftR2                   R-Squared Measure under Accelerated Failure
                          Time (AFT) Models
  aftables                Create Spreadsheet Publications Following Best
                          Practice
  aftgee                  Accelerated Failure Time Model with Generalized
                          Estimating Equations
  afthd                   Accelerated Failure Time for High Dimensional
                          Data with MCMC
  aftsem                  Semiparametric Accelerated Failure Time Model
  afttest                 Model Diagnostics for Accelerated Failure Time
                          Models
  ag5Tools                Toolbox for Downloading and Extracting
                          Copernicus AgERA5 Data
  agRee                   Various Methods for Measuring Agreement
  agcounts                Calculate 'ActiGraph' Counts from Accelerometer
                          Data
  ageg                    Age Grouping Functions
  agena.ai                R Wrapper for 'agena.ai' API
  ageutils                Collection of Functions for Working with Age
                          Intervals
  agfh                    Agnostic Fay-Herriot Model for Small Area
                          Statistics
  aggTrees                Aggregation Trees
  agghoo                  Aggregated Hold-Out Cross Validation
  aggreCAT                Mathematically Aggregating Expert Judgments
  aggregation             p-Value Aggregation Methods
  aggutils                Utilities for Aggregating Probabilistic
                          Forecasts
  aghq                    Adaptive Gauss Hermite Quadrature for Bayesian
                          Inference
  aglm                    Accurate Generalized Linear Model
  agop                    Aggregation Operators and Preordered Sets
  agpower                 Recurrent Event Analysis Planning for Robust
                          Andersen-Gill Model
  agregR                  Bayesian State-Space Aggregation of Brazilian
                          Presidential Polls
  agriDQ                  Data Quality Checks and Statistical Assumption
                          Testing for Agricultural Experiments
  agriReg                 Linear and Nonlinear Regression for
                          Agricultural Data
  agriTutorial            Tutorial Analysis of Some Agricultural
                          Experiments
  agricolae               Statistical Procedures for Agricultural
                          Research
  agricolaeplotr          Visualization of Design of Experiments from the
                          'agricolae' Package
  agridat                 Agricultural Datasets
  agrifeature             Agriculture Image Feature
  agriutilities           Utilities for Data Analysis in Agriculture
  agriwater               Evapotranspiration and Energy Fluxes Spatial
                          Analysis
  agrmt                   Calculate Concentration and Dispersion in
                          Ordered Rating Scales
  agrobox                 Data Visualization and Statistical Tools for
                          Agroindustrial Experiments
  agrostab                Stability Analysis for Agricultural Research
  ags                     Crosswalk Municipality and District Statistics
                          in Germany
  agua                    'tidymodels' Integration with 'h2o'
  agvgd                   An R Implementation of the 'Align-GVGD' Method
  ahaz                    Regularization for Semiparametric Additive
                          Hazards Regression
  ahnr                    An Implementation of the Artificial Hydrocarbon
                          Networks
  ahocorasick             Fast Multi-Pattern String Matching with the
                          'Aho-Corasick' Algorithm
  ahptopsis2n             Hybrid Method for Multiple Criteria
                          Decision-Making (MCDM)
  ai                      Build, Predict and Analyse Artificial
                          Intelligence Models
  aiDIF                   Differential Item Functioning for AI-Scored
                          Assessments
  aiRly                   R Wrapper for 'Airly' API
  aiRthermo               Atmospheric Thermodynamics and Visualization
  aieconindex             Access the 'Anthropic Economic Index' Dataset
  aifeducation            Artificial Intelligence for Education
  aihuman                 Experimental Evaluation of Algorithm-Assisted
                          Human Decision-Making
  aimPlot                 Create Pie Like Plot for Completeness
  aimsir17                Irish Weather Observing Stations Hourly Records
                          for 2017
  aion                    Archaeological Time Series
  air                     AI Assistant to Write and Understand R Code
  airGR                   Suite of GR Hydrological Models for
                          Precipitation-Runoff Modelling
  airGRdatasets           Hydro-Meteorological Catchments Datasets for
                          the 'airGR' Packages
  airGRdatassim           Ensemble-Based Data Assimilation with GR
                          Hydrological Models
  airGRiwrm               'airGR' Integrated Water Resource Management
  airGRteaching           Teaching Hydrological Modelling with the GR
                          Rainfall-Runoff Models ('Shiny' Interface
                          Included)
  aire.zmvm               Download Mexico City Pollution, Wind, and
                          Temperature Data
  airnow                  Retrieve 'AirNow' Air Quality Observations and
                          Forecasts
  airportr                Convenience Tools for Working with Airport Data
  airports                Data on Airports
  airqualityES            Air Quality Measurements in Spain from 2011 to
                          2018
  airr                    AIRR Data Representation Reference Library
  airship                 Visualization of Simulated Datasets with
                          Multiple Simulation Input Dimensions
  airt                    Evaluation of Algorithm Collections Using Item
                          Response Theory
  aisdk                   Unified Interface for AI Model Providers
  aisdk.providers         Additional Model Provider Adapters for the
                          'aisdk' Toolkit
  aisoph                  Additive Isotonic Proportional Hazards Model
  ajv                     Another JSON Schema Validator
  aka                     Define Aliases for R Expressions
  akc                     Automatic Knowledge Classification
  akiFlagger              Flags Acute Kidney Injury (AKI)
  akima                   Interpolation of Irregularly and Regularly
                          Spaced Data
  akin                    Functional Utilities for Data Processing
  akmbiclust              Alternating K-Means Biclustering
  alabama                 Constrained Nonlinear Optimization
  alabaster.base          Save Bioconductor Objects to File
  alabaster.matrix        Load and Save Artifacts from File
  alabaster.ranges        Load and Save Ranges-related Artifacts from
                          File
  alabaster.sce           Load and Save SingleCellExperiment from File
  alabaster.schemas       Schemas for the Alabaster Framework
  alabaster.se            Load and Save SummarizedExperiments from File
  alarmdata               Download, Merge, and Process Redistricting Data
  albatross               PARAFAC Analysis of Fluorescence
                          Excitation-Emission Matrices
  albersdown              Minimalist Theme and Vignette Kit for 'pkgdown'
                          and R Markdown
  albopictus              Age-Structured Population Dynamics Model
  alcoholSurv             Light Daily Alcohol and Longevity
  alcyon                  Spatial Network Analysis
  ald                     The Asymmetric Laplace Distribution
  aldvmm                  Adjusted Limited Dependent Variable Mixture
                          Models
  ale                     Interpretable Machine Learning and Statistical
                          Inference with Accumulated Local Effects (ALE)
  alfr                    Connectivity to 'Alfresco' Content Management
                          Repositories
  alfred                  Downloading Time Series from ALFRED Database
                          for Various Vintages
  algaeClassify           Tools to Query the 'Algaebase' Online Database,
                          Standardize Phytoplankton Taxonomic Data, and
                          Perform Functional Group Classifications
  algebraic.dist          Algebra over Probability Distributions
  algebraic.mle           Algebraic Maximum Likelihood Estimators
  algo                    Implement an Address Search Auto Completion
                          Menu on 'Shiny' Text Inputs Using the 'Algolia
                          Places' 'Javascript' Library
  algorithmia             Allows you to Easily Interact with the
                          Algorithmia Platform
  alien                   Estimate Invasive and Alien Species (IAS)
                          Introduction Rates
  align                   A Modified DTW Algorithm for Stratigraphic Time
                          Series Alignment
  alkahest                Pre-Processing XY Data from Experimental
                          Methods
  allMT                   Acute Lymphoblastic Leukemia Maintenance
                          Therapy Analysis
  allcontributors         Acknowledge all Contributors to a Project
  alleHap                 Allele Imputation and Haplotype Reconstruction
                          from Pedigree Databases
  allelematch             Identifying Unique Multilocus Genotypes where
                          Genotyping Error and Missing Data may be
                          Present
  allestimates            Effect Estimates from All Models
  allocation              Exact Optimal Allocation Algorithms for
                          Stratified Sampling
  allofus                 Interface for 'All of Us' Researcher Workbench
  allometry               Examples of Datasets on Allometry
  allomr                  Removing Allometric Effects of Body Size in
                          Morphological Analysis
  alluvial                Alluvial Diagrams
  almanac                 Tools for Working with Recurrence Rules
  alone                   Datasets from the Survival TV Series Alone
  alookr                  Model Classifier for Binary Classification
  aloom                   All Leave-One-Out Models
  alpaca                  Fit GLM's with High-Dimensional k-Way Fixed
                          Effects
  alpha.correction.bh     Benjamini-Hochberg Alpha Correction
  alphaN                  Set Alpha Based on Sample Size Using Bayes
                          Factors
  alphaOutlier            Obtain Alpha-Outlier Regions for Well-Known
                          Probability Distributions
  alphabetr               Algorithms for High-Throughput Sequencing of
                          Antigen-Specific T Cells
  alphahull               Generalization of the Convex Hull of a Sample
                          of Points in the Plane
  alphashape3d            Implementation of the 3D Alpha-Shape for the
                          Reconstruction of 3D Sets from a Point Cloud
  alphastable             Inference for Stable Distribution
  alphavantagepf          Comprehensive R Wrapper for 'Alphavantage
                          Financial Data' API
  alphavantager           Lightweight Interface to the Alpha Vantage API
  alpmixBayes             Bayesian Estimation for Alpha-Mixture Survival
                          Models
  alqrfe                  Adaptive Lasso Quantile Regression with Fixed
                          Effects
  alr4                    Data to Accompany Applied Linear Regression 4th
                          Edition
  alsi                    Aggregated Latent Space Index for Binary,
                          Ordinal, and Continuous Data
  altR2                   Alternative Estimators to Adjusted R-Squared
  altadata                API Wrapper for Altadata.io
  altair                  Interface to 'Altair'
  altdoc                  Package Documentation Websites with 'Quarto',
                          'Docsify', 'Docute', or 'MkDocs'
  alternativeROC          Alternative and Fast ROC Analysis
  altfuelr                Provides an Interface to the NREL Alternate
                          Fuels Locator
  altmeta                 Alternative Meta-Analysis Methods
  amVennDiagram5          Interactive Venn Diagrams
  amadeus                 Accessing and Analyzing Large-Scale
                          Environmental Data
  amanpg                  Alternating Manifold Proximal Gradient Method
                          for Sparse PCA
  amap                    Another Multidimensional Analysis Package
  amapGeocode             An Interface to the 'AutoNavi Maps' API
                          Geocoding Services
  amapro                  Thin Wrapper for Mapping Library
                          'AMap'('Gaode')
  amazonadsR              Get Amazon Ads Data via the 'Windsor.ai' API
  amazons3R               Get Amazon S3 Data via the 'Windsor.ai' API
  amazonspR               Get Amazon Sp Data via the 'Windsor.ai' API
  ambiR                   Calculate AZTI’s Marine Biotic Index
  ambient                 A Generator of Multidimensional Noise
  ambiorix                Web Framework Inspired by 'Express.js'
  ambit                   Simulation and Estimation of Ambit Processes
  amelie                  Anomaly Detection with Normal Probability
                          Functions
  amen                    Additive and Multiplicative Effects Models for
                          Networks and Relational Data
  ameras                  Analyze Multiple Exposure Realizations in
                          Association Studies
  amerika                 American Politics-Inspired Color Palette
                          Generator
  ami                     Checks for Various Computing Environments
  ammiBayes               Bayesian Ammi Model for Continuous Data with or
                          without Additive and Dominance Effect
  amp                     Statistical Test for the Multivariate Point
                          Null Hypotheses
  amp.dm                  Data Management Tools for Pharmacometrics
  amp.sim                 Flexible Simulation Utilities for
                          Pharmacometric Modeling
  ampd                    An Algorithm for Automatic Peak Detection in
                          Noisy Periodic and Quasi-Periodic Signals
  ampir                   Predict Antimicrobial Peptides
  amregtest               Runs Allelematch Regression Tests
  amsSim                  Adaptive Multilevel Splitting for Option
                          Simulation and Pricing
  amscorer                Clinical Scores Calculator for Healthcare
  amt                     Animal Movement Tools
  anMC                    Compute High Dimensional Orthant Probabilities
  anabel                  Analysis of Binding Events + l
  anacor                  Simple and Canonical Correspondence Analysis
  analogsea               Interface to 'DigitalOcean'
  analogue                Analogue and Weighted Averaging Methods for
                          Palaeoecology
  analyzer                Data Analysis and Automated R Notebook
                          Generation
  ananke                  Quantitative Chronology in Archaeology
  and                     Construct Natural-Language Lists with
                          Internationalization
  andorR                  Optimisation of the Analysis of AND-OR Decision
                          Trees
  andrews                 Various Andrews Curves
  anesrake                ANES Raking Implementation
  angstromATE             Imports Log Files from Angstrom Engineering
                          Thermal Evaporator
  angstroms               Tools for 'ROMS' the Regional Ocean Modeling
                          System
  aniDom                  Inferring Dominance Hierarchies and Estimating
                          Uncertainty
  aniSNA                  Statistical Network Analysis of Animal Social
                          Networks
  anim.plots              Simple Animated Plots for R
  animate                 A Web-Based Graphics Device for Animated
                          Visualisations
  animation               A Gallery of Animations in Statistics and
                          Utilities to Create Animations
  animbook                Visualizing Changes in Performance Measures and
                          Demographic Affiliations using Animation
  animejs                 R Bindings to the 'Anime.js' Animation Library
  animint2                Animated Interactive Grammar of Graphics
  animl                   A Collection of ML Tools for Species Detection
                          and Classification in Camera Trap Images and
                          Videos
  anipaths                Animation of Multiple Trajectories with
                          Uncertainty
  aniview                 Animate Shiny and R Markdown Content when it
                          Comes into View
  ankiR                   Read and Analyze 'Anki' Flashcard Databases
  annaffy                 Annotation tools for Affymetrix biological
                          metadata
  anndata                 'anndata' for R
  annmatrix               Annotated Matrix: Matrices with Persistent Row
                          and Column Annotations
  annotate                Annotation for microarrays
  annotater               Annotate Package Load Calls
  annotator               Image Annotation and Polygon Outlining using
                          Free Drawing
  anocva                  A Non-Parametric Statistical Test to Compare
                          Clustering Structures
  anoint                  Analysis of Interactions
  anomalize               Tidy Anomaly Detection
  anomaly                 Detecting Anomalies in Data
  anominate               Alpha-NOMINATE Ideal Point Estimator
  anomo                   Analysis of Moderation, Statistical Power, and
                          Optimal Design for Studies Detecting Difference
                          and Equivalence
  anovapowersim           Simple Power Simulations for ANOVAs
  anovir                  Analysis of Virulence
  anscombiser             Create Datasets with Identical Summary
                          Statistics
  antaresEditObject       Edit an 'Antares' Simulation
  antaresProcessing       'Antares' Results Processing
  antaresRead             Import, Manipulate and Explore the Results of
                          an 'Antares' Simulation
  antaresViz              Antares Visualizations
  antedep                 Antedependence Models for Longitudinal Data
  anthro                  Computation of the WHO Child Growth Standards
  anthroplus              Computation of the WHO 2007 References for
                          School-Age Children and Adolescents (5 to 19
                          Years)
  anticlust               Subset Partitioning via Anticlustering
  antitrust               Tools for Antitrust Practitioners
  antiword                Extract Text from Microsoft Word Documents
  anyLib                  Install and Load Any Package from CRAN,
                          Bioconductor or Github
  anybadger               Create Custom Pipeline Badges
  anyflights              Query 'nycflights13'-Like Air Travel Data for
                          Given Years and Airports
  anytime                 Anything to 'POSIXct' or 'Date' Converter
  ao                      Alternating Optimization
  aod                     Analysis of Overdispersed Data
  aods3                   Analysis of Overdispersed Data using S3 Methods
  aoos                    Another Object Orientation System
  aopdata                 Data from the 'Access to Opportunities Project
                          (AOP)'
  aoristic                Generates Aoristic Probability Distributions
  aorsf                   Accelerated Oblique Random Forests
  aos                     Animate on Scroll Library for 'shiny'
  apa                     Format Outputs of Statistical Tests According
                          to APA Guidelines
  apa7                    Facilitate Writing Documents in American
                          Psychological Association Style, Seventh
                          Edition
  apaTables               Create American Psychological Association (APA)
                          Style Tables
  apaText                 Create R Markdown Text for Results in the Style
                          of the American Psychological Association (APA)
  apache.sedona           R Interface for Apache Sedona
  apathe                  American Psychological Association Thesis
                          Templates for R Markdown
  apca                    Advanced Principal Component Analysis
  apcf                    Adapted Pair Correlation Function
  apcluster               Affinity Propagation Clustering
  apdesign                An Implementation of the Additive Polynomial
                          Design Matrix
  ape                     Analyses of Phylogenetics and Evolution
  apeglm                  Approximate posterior estimation for GLM
                          coefficients
  apercu                  Quick Look at your Data
  apex                    Phylogenetic Methods for Multiple Gene Data
  apexcharter             Create Interactive Chart with the JavaScript
                          'ApexCharts' Library
  aphid                   Analysis with Profile Hidden Markov Models
  aphylo                  Statistical Inference and Prediction of
                          Annotations in Phylogenetic Trees
  api2lm                  Functions and Data Sets for the Book "A
                          Progressive Introduction to Linear Models"
  apisensr                Interface to 'episensr' for Sensitivity
                          Analysis of Epidemiological Results
  aplms                   Additive Partial Linear Models with Symmetric
                          Autoregressive Errors
  aplore3                 Datasets from Hosmer, Lemeshow and Sturdivant,
                          "Applied Logistic Regression" (3rd Ed., 2013)
  aplot                   Decorate a 'ggplot' with Associated Information
  aplotExtra              Creating Composite Plots using 'aplot'
  aplpack                 Another Plot Package: 'Bagplots', 'Iconplots',
                          'Summaryplots', Slider Functions and Others
  apm                     Averaged Prediction Models
  apmx                    Automated Population Pharmacokinetic Dataset
                          Assembly
  apng                    Convert Png Files into Animated Png
  apollo                  Tools for Choice Model Estimation and
                          Application
  apor                    Assessment of Predictions for an Ordinal
                          Response
  appRiori                Code and Obtain Customized Planned Comparisons
                          with 'appRiori'
  appeears                Interface to 'AppEEARS' NASA Web Services
  appleadsR               Get Apple Search Ads Data via the 'Windsor.ai'
                          API
  applicable              A Compilation of Applicability Domain Methods
  appnn                   Amyloid Propensity Prediction Neural Network
  apportion               Apportion Seats
  appraise                Bias-Aware Evidence Synthesis in Systematic
                          Reviews
  approxOT                Approximate and Exact Optimal Transport Methods
  approximator            Bayesian Prediction of Complex Computer Codes
  approxmatch             Approximately Optimal Fine Balance Matching
                          with Multiple Groups
  appsflyeR               Get Data from 'Appsflyer' via the 'Windsor.ai'
                          API
  appsheet                An Interface to the 'AppSheet' API
  aprean3                 Datasets from Draper and Smith "Applied
                          Regression Analysis" (3rd Ed., 1998)
  aprof                   Amdahl's Profiler, Directed Optimization Made
                          Easy
  apsimx                  Inspect, Read, Edit and Run 'APSIM' "Next
                          Generation" and 'APSIM' Classic
  apt                     Asymmetric Price Transmission
  apyramid                Visualize Population Pyramids Aggregated by Age
  aqfig                   Display Air Quality Model Output and Monitoring
                          Data
  aqp                     Algorithms for Quantitative Pedology
  aquacultuR              A Comprehensive R Tool for Zootechnical Metrics
  aquodom                 Access to Aquo domaintables from R (Dutch)
  arabic2kansuji          Convert Arabic Numerals to Kansuji
  arabicStemR             Arabic Stemmer for Text Analysis
  arakno                  ARAchnid KNowledge Online
  aramappings             Computes Adaptable Radial Axes Mappings
  arc                     Association Rule Classification
  arcgeocoder             Geocoding with the 'ArcGIS' REST API Service
  arcgis                  ArcGIS Location Services Meta-Package
  arcgisgeocode           A Robust Interface to ArcGIS 'Geocoding
                          Services'
  arcgislayers            Harness ArcGIS Data Services
  arcgisplaces            Search for POIs using ArcGIS 'Places Service'
  arcgisutils             R-ArcGIS Bridge Utility Functions
  archdata                Example Datasets from Archaeological Research
  archeoViz               Visualisation, Exploration, and Web
                          Communication of Archaeological Spatial Data
  archeofrag              Spatial Analysis in Archaeology from Refitting
                          Fragments
  archeofrag.gui          Spatial Analysis in Archaeology from Refitting
                          Fragments (GUI)
  archetypal              Finds the Archetypal Analysis of a Data Frame
  archetyper              An Archetype for Data Mining and Data Science
                          Projects
  archetypes              Archetypal Analysis
  archiDART               Plant Root System Architecture Analysis Using
                          DART and RSML Files
  archipelago             Visualising Variant Set Association Test
                          Results
  archive                 Multi-Format Archive and Compression Support
  archiveRetriever        Retrieve Archived Web Pages from the 'Internet
                          Archive'
  archivist               Tools for Storing, Restoring and Searching for
                          R Objects
  arcopt                  Adaptive Regularization using Cubics for
                          Optimization
  arcpbf                  Process ArcGIS Protocol Buffer
                          FeatureCollections
  arcpullr                Pull Data from an 'ArcGIS REST' API
  arcpy                   Interface to 'ArcGIS' 'Python' Modules
  arctools                Processing and Physical Activity Summaries of
                          Minute Level Activity Data
  ardl.nardl              Linear and Nonlinear Autoregressive Distributed
                          Lag Models: General-to-Specific Approach
  ardlverse               Comprehensive ARDL: Panel, Bootstrap and
                          Fourier Methods
  ards                    Creates Analysis Results Datasets
  area                    Calculate Area of Triangles and Polygons
  areaOfEffect            Spatial Support at Scale
  areabiplot              Area Biplot
  areal                   Areal Weighted Interpolation
  areaplot                Plot Stacked Areas and Confidence Bands as
                          Filled Polygons
  arenar                  Arena for the Exploration and Comparison of any
                          ML Models
  arete                   Automated REtrieval from TExt
  arf                     Adversarial Random Forests
  arfima                  Fractional ARIMA (and Other Long Memory) Time
                          Series Modeling
  arg                     Clean and Simple Argument Checking
  argminCS                Argmin Inference over a Discrete Candidate Set
  argo                    Accurate Estimation of Influenza Epidemics
                          using Google Search Data
  argoFloats              Analysis of Oceanographic Argo Floats
  argonDash               Argon Shiny Dashboard Template
  argonR                  R Interface to Argon HTML Design
  argosfilter             Argos Locations Filter
  argparse                Command Line Optional and Positional Argument
                          Parser
  argparser               Command-Line Argument Parser
  argus                   Random Variate Generator for the Argus
                          Distribution
  aricode                 Efficient Computations of Standard Clustering
                          Comparison Measures
  aridagri                Comprehensive Statistical Tools for
                          Agricultural Research
  arima2                  Likelihood Based Inference for ARIMA Modeling
  arkdb                   Archive and Unarchive Databases Using Flat
                          Files
  arkhaia                 Archaeological and Historical Analysis
  arkhe                   Tools for Cleaning Rectangular Data
  arl                     Embedded Lisp Dialect
  arlclustering           Exploring Social Network Structures Through
                          Friendship-Driven Community Detection with
                          Association Rules Mining
  arm                     Data Analysis Using Regression and
                          Multilevel/Hierarchical Models
  armaOptions             ARMA Models to Value Stock Options
  armadillo4r             An 'Armadillo' Interface
  armspp                  Adaptive Rejection Metropolis Sampling (ARMS)
                          via 'Rcpp'
  aroma.affymetrix        Analysis of Large Affymetrix Microarray Data
                          Sets
  aroma.apd               A Probe-Level Data File Format Used by
                          'aroma.affymetrix' [deprecated]
  aroma.cn                Copy-Number Analysis of Large Microarray Data
                          Sets
  aroma.core              Core Methods and Classes Used by 'aroma.*'
                          Packages Part of the Aroma Framework
  aroma.light             Light-Weight Methods for Normalization and
                          Visualization of Microarray Data using Only
                          Basic R Data Types
  arpr                    Advanced R Pipes
  arrApply                Apply a Function to a Margin of an Array
  arrangements            Fast Generators and Iterators for Permutations,
                          Combinations, Integer Partitions and
                          Compositions
  arrayhelpers            Convenience Functions for Arrays
  arrg                    Flexible Argument Parsing for R Scripts
  arrow                   Integration to 'Apache' 'Arrow'
  arrowheadr              Make Custom Arrowheads
  ars                     Adaptive Rejection Sampling
  arsenal                 An Arsenal of 'R' Functions for Large-Scale
                          Statistical Summaries
  arthistory              Art History Textbook Data
  artma                   Automatic Replication Tools for Meta-Analysis
  artpack                 Creates Generative Art Data
  arules                  Mining Association Rules and Frequent Itemsets
  arulesCBA               Classification Based on Association Rules
  arulesNBMiner           Mining NB-Frequent Itemsets and NB-Precise
                          Rules
  arulesSequences         Mining Frequent Sequences
  arulesViz               Visualizing Association Rules and Frequent
                          Itemsets
  asaur                   Data Sets for "Applied Survival Analysis Using
                          R""
  asbio                   A Collection of Statistical Tools for
                          Biologists
  ascii                   Export R Objects to Several Markup Languages
  asciiSetupReader        Reads Fixed-Width ASCII Data Files (.txt or
                          .dat) that Have Accompanying Setup Files (.sps
                          or .sas)
  asciicast               Create 'Ascii' Screen Casts from R Scripts
  asciichartr             Lightweight ASCII Line Graphs
  asciiruler              Render an ASCII Ruler
  ascotraceR              Simulate the Spread of Ascochyta Blight in
                          Chickpea
  asd                     Simulations for Adaptive Seamless Designs
  asdreader               Reading ASD Binary Files in R
  ash                     David Scott's ASH Routines
  ashapesampler           Generating Alpha Shapes
  ashr                    Methods for Adaptive Shrinkage, using Empirical
                          Bayes
  asht                    Applied Statistical Hypothesis Tests
  askgpt                  Asking GPT About R Stuff
  askpass                 Password Entry Utilities for R, Git, and SSH
  aslib                   Interface to the Algorithm Selection Benchmark
                          Library
  asm                     Optimal Convex M-Estimation for Linear
                          Regression via Antitonic Score Matching
  asmbPLS                 Predicting and Classifying Patient Phenotypes
                          with Multi-Omics Data
  asnipe                  Animal Social Network Inference and
                          Permutations for Ecologists
  aspace                  Functions for Estimating Centrographic
                          Statistics
  aspect                  A General Framework for Multivariate Analysis
                          with Optimal Scaling
  aspi                    Analysis of Symmetry of Parasitic Infections
  aspline                 Spline Regression with Adaptive Knot Selection
  asremlPlus              Augments 'ASReml-R' in Fitting Mixed Models and
                          Packages Generally in Exploring Prediction
                          Differences
  assemblykor             Korean National Assembly Data for Political
                          Science Education
  assert                  Validate Function Arguments
  assertHE                Visualisation and Verification of Health
                          Economic Decision Models
  assertable              Verbose Assertions for Tabular Data
                          (Data.frames and Data.tables)
  assertions              Simple Assertions for Beautiful and
                          Customisable Error Messages
  assertr                 Assertive Programming for R Analysis Pipelines
  assertthat              Easy Pre and Post Assertions
  assessor                Assessment Tools for Regression Models with
                          Discrete and Semicontinuous Outcomes
  assignPOP               Population Assignment using Genetic,
                          Non-Genetic or Integrated Data in a Machine
                          Learning Framework
  assignR                 Infer Geographic Origin from Isotopic Data
  assist                  A Suite of R Functions Implementing Spline
                          Smoothing Techniques
  assocInd                Implements New and Existing Association Indices
                          for Constructing Animal Social Networks
  assorthead              Assorted Header-Only C++ Libraries
  assortnet               Calculate the Assortativity Coefficient of
                          Weighted and Binary Networks
  asteRisk                Computation of Satellite Position
  aster                   Aster Models
  aster2                  Aster Models
  astgrepr                Parse and Manipulate R Code
  astroFns                Astronomy: Time and Position Functions, Misc.
                          Utilities
  astrochron              A Computational Tool for Astrochronology
  astronomR               Cosmic Insights: Statistical Frameworks for
                          Astronomers
  astronomyengine         R Bindings to the 'Astronomy Engine' C Library
  astsa                   Applied Statistical Time Series Analysis
  asus                    Adaptive SURE Thresholding Using Side
                          Information
  asylum                  Data on Asylum and Resettlement for the UK
  asymmetry               Multidimensional Scaling of Asymmetric
                          Proximities
  asymmetry.measures      Asymmetry Measures for Probability Density
                          Functions
  asympDiag               Diagnostic Tools for Asymptotic Theory
  asympTest               A Simple R Package for Classical Parametric
                          Statistical Tests and Confidence Intervals in
                          Large Samples
  asymptor                Estimate Asymptomatic Cases via
                          Capture/Recapture Methods
  atRisk                  At-Risk
  ata                     Automated Test Assembly
  atable                  Create Tables for Reporting Clinical Trials
  atakrig                 Area-to-Area Kriging
  atime                   Asymptotic Timing
  atlas                   Stanford 'ATLAS' Search Engine API
  atlasapprox             Cell Atlas Approximations
  atmopt                  Analysis-of-Marginal-Tail-Means
  ato                     Download and Tidy Australian Taxation Office
                          Data
  atom4R                  Tools to Handle and Publish Metadata as 'Atom'
                          XML Format
  atpolR                  ATPOL Grid Implementation
  atrrr                   Wrapper for the 'AT' Protocol Behind 'Bluesky'
  attachment              Deal with Dependencies
  attempt                 Tools for Defensive Programming
  attention               Self-Attention Algorithm
  attrib                  Attributable Burden of Disease
  auRoc                   Various Methods to Estimate the AUC
  audio                   Audio Interface for R
  audiometry              Standard Conform Pure Tone Audiometry (PTA)
                          Plots
  audit                   Bounds for Accounting Populations
  auditor                 Model Audit - Verification, Validation, and
                          Error Analysis
  audrex                  Automatic Dynamic Regression using Extreme
                          Gradient Boosting
  audubon                 Japanese Text Processing Tools
  augSIMEX                Analysis of Data with Mixed Measurement Error
                          and Misclassification in Covariates
  auk                     eBird Data Extraction and Processing in R
  aum                     Area Under Minimum of False Positives and
                          Negatives
  ausplotsR               TERN AusPlots Australian Ecosystem Monitoring
                          Data
  auth0                   Authentication in Shiny with Auth0
  authordown              Author Metadata Management and Manuscript Front
                          Matter
  authoritative           Parse and Deduplicate Author Names
  auto.pca                Automatic Variable Reduction Using Principal
                          Component Analysis
  autoBagging             Learning to Rank Bagging Workflows with
                          Metalearning
  autoCovariateSelection
                          Automated Covariate Selection Using HDPS
                          Algorithm
  autoEnsemble            Automated Stacked Ensemble Classifier for
                          Severe Class Imbalance
  autoFC                  Automatic Toolkit for Construction,
                          Optimization, Scoring and Simulation of
                          Forced-Choice Tests
  autoFRK                 Automatic Fixed Rank Kriging
  autoFlagR               AI-Driven Anomaly Detection for Data Quality
  autoGO                  Auto-GO: Reproducible, Robust and High Quality
                          Ontology Enrichment Visualizations
  autoLibLoad             Automate Retrieving, Building, Installing and
                          Loading Specified Packages
  autoMR                  Automated Mendelian Randomization Workflows and
                          Visualizations
  autoReg                 Automatic Linear and Logistic Regression and
                          Survival Analysis
  autoScorecard           Fully Automatic Generation of Scorecards
  autoTS                  Automatic Model Selection and Prediction for
                          Univariate Time Series
  autoann                 Neural Network–Based Model Selection and
                          Forecasting
  autocodebook            Automatic Codebook and Tracking for 'Spark' and
                          'dplyr' Pipelines
  autocogs                Automatic Cognostic Summaries
  autodb                  Automatic Database Normalisation for Data
                          Frames
  autogam                 Automate the Creation of Generalized Additive
                          Models (GAMs)
  autograph               Automatic Plotting and Theming of Many Graphs
  autoharp                Semi-Automatic Grading of R and Rmd Scripts
  autohrf                 Automated Generation of Data-Informed GLM
                          Models in Task-Based fMRI Data Analysis
  autoimage               Multiple Heat Maps for Projected Coordinates
  autoimport              Automatic Generation of @importFrom Tags
  autokeras               R Interface to 'AutoKeras'
  automagic               Automagically Document and Install Packages
                          Necessary to Run R Code
  automap                 Automatic Interpolation Package
  automatedRecLin         Record Linkage Based on an Entropy-Maximizing
                          Classifier
  automatedtests          Automating Choosing Statistical Tests
  automerge               R Bindings for 'Automerge' 'CRDT' Library
  autometric              Background Resource Logging
  automl                  Deep Learning with Metaheuristic
  autonewsmd              Auto-Generate Changelog using Conventional
                          Commits
  autoshiny               Automatic Transformation of an 'R' Function
                          into a 'shiny' App
  autoslider.core         Slide Automation for Tables, Listings and
                          Figures
  autostats               Auto Stats
  autostsm                Automatic Structural Time Series Models
  autotab                 Variational Autoencoders for Heterogeneous
                          Tabular Data
  autotestR               Automated Functions for Basic Statistical Tests
  autotesteR              Automated Functions for Basic Statistical Tests
  autothresholdr          An R Port of the 'ImageJ' Plugin 'Auto
                          Threshold'
  autovi                  Auto Visual Inference with Computer Vision
                          Models
  auxvecLASSO             LASSO Auxiliary Variable Selection and
                          Auxiliary Vector Diagnostics
  av                      Working with Audio and Video in R
  available               Check if the Title of a Package is Available,
                          Appropriate and Interesting
  avar                    Allan Variance
  averisk                 Calculation of Average Population Attributable
                          Fractions and Confidence Intervals
  avesperu                Access to the List of Bird Species of Peru
  avidaR                  A Computational Biologist’s Toolkit To Get Data
                          From 'avidaDB'
  avilistr                Access and Work with the 'AviList' Global Avian
                          Checklist
  avlm                    Safe Anytime Valid Inference for Linear Models
  avocado                 Weekly Hass Avocado Sales Summary
  avotrex                 A Global Dataset of Anthropogenic Extinct Birds
                          and their Traits: Phylogeny Builder
  avseqmc                 Anytime-Valid Sequential Estimation of
                          Monte-Carlo p-Values
  avstrat                 Stratigraphic Data Processing and Section Plots
  awdb                    Query the USDA NWCC Air and Water Database REST
                          API
  aweSOM                  Interactive Self-Organizing Maps
  aweek                   Convert Dates to Arbitrary Week Definitions
  awinR                   Get Data from 'Awin' via the 'Windsor.ai' API
  aws                     Adaptive Weights Smoothing
  aws.ecx                 Communicating with AWS EC2 and ECS using AWS
                          REST APIs
  aws.iam                 AWS IAM Client Package
  aws.kms                 'AWS Key Management Service' Client Package
  aws.lambda              AWS Lambda Client Package
  aws.polly               Client for AWS Polly
  aws.s3                  'AWS S3' Client Package
  aws.signature           Amazon Web Services Request Signatures
  aws.transcribe          Client for 'AWS Transcribe'
  aws.translate           Client for 'AWS Translate'
  aws.wrfsmn              Data Processing of SMN Hi-Res Weather Forecast
                          from 'AWS'
  awsMethods              Class and Methods Definitions for Packages
                          'aws', 'adimpro', 'fmri', 'dwi'
  axisandallies           Axis and Allies Spring
  azlogr                  Logging in 'R' and Post to 'Azure Log
                          Analytics' Workspace
  azr                     Credential Chain for Seamless 'OAuth 2.0'
                          Authentication to 'Azure Services'
  azuremapsr              Interface to the 'Azure Maps' API
  azuremlsdk              Interface to the 'Azure Machine Learning' 'SDK'
  b32                     Fast and Vectorized Base32 Encoding
  b64                     Fast and Vectorized Base 64 Engine
  bReeze                  Functions for Wind Resource Assessment
  bSi                     Modeling and Computing Biogenic Silica ('bSi')
                          from Inland and Pelagic Sediments
  bSims                   Agent-Based Bird Point Count Simulator
  bWGR                    Bayesian Whole-Genome Regression
  baRcodeR                Label Creation for Tracking and Collecting Data
                          from Biological Samples
  baRulho                 Quantifying (Animal) Sound Degradation
  babebi                  Bayesian Estimation and Validation for Small-N
                          Designs with Rater Bias
  babel                   Ribosome Profiling Data Analysis
  babelgene               Gene Orthologs for Model Organisms in a Tidy
                          Data Format
  babelmixr2              Use 'nlmixr2' to Interact with Open Source and
                          Commercial Software
  babelwhale              Talking to 'Docker' and 'Singularity'
                          Containers
  babette                 Control 'BEAST2'
  babyTimeR               Parse Output from 'BabyTime' Application
  babynames               US Baby Names 1880-2017
  babynamesIL             Israel Baby Names 1949-2024
  bacenR                  Access Data from Brazilian Central Bank:
                          IFdata, Active Institutions, Balance Sheets and
                          Normative Acts
  bacistool               Bayesian Classification and Information Sharing
                          (BaCIS) Tool for the Design of Multi-Group
                          Phase II Clinical Trials
  backbone                Extracts the Backbone from Networks
  backpipe                Backward Pipe (Right-to-Left) Operator
  backports               Reimplementations of Functions Introduced Since
                          R-3.0.0
  backtest                Exploring Portfolio-Based Conjectures About
                          Financial Instruments
  backtestGraphics        Interactive Graphics for Portfolio Data
  baclava                 Bayesian Analysis of Cancer Latency with
                          Auxiliary Variable Augmentation
  bacondecomp             Goodman-Bacon Decomposition
  bacontrees              Bayesian Context Trees for Discrete Sequence
                          Data
  bacr                    Bayesian Adjustment for Confounding
  badgen                  Fast and Simple Badge Generator
  badger                  Badge for R Package
  badp                    Bayesian Averaging for Dynamic Panels
  baf                     Block Assignment Files
  baffle                  Make Waffle Plots with Base Graphics
  bage                    Bayesian Estimation and Forecasting of
                          Age-Specific Rates
  bagged.outliertrees     Robust Explainable Outlier Detection Based on
                          OutlierTree
  baggingbwsel            Bagging Bandwidth Selection in Kernel Density
                          and Regression Estimation
  baggr                   Bayesian Aggregate Treatment Effects
  baguette                Efficient Model Functions for Bagging
  bagyo                   Philippine Tropical Cyclones Data
  bahc                    Filter Covariance and Correlation Matrices with
                          Bootstrapped-Averaged Hierarchical Ansatz
  bain                    Bayes Factors for Informative Hypotheses
  baizer                  Useful Functions for Data Processing
  bakR                    Analyze and Compare Nucleotide Recoding RNA
                          Sequencing Datasets
  bakeoff                 Data from "The Great British Bake Off"
  baker                   "Nested Partially Latent Class Models"
  bakerrr                 Background-Parallel Jobs
  baldur                  Bayesian Hierarchical Modeling for Label-Free
                          Proteomics
  balnet                  Pathwise Estimation of Covariate Balancing
                          Propensity Scores
  bama                    High Dimensional Bayesian Mediation Analysis
  bambooHR                A Wrapper to the 'BambooHR' API
  bamdit                  Bayesian Meta-Analysis of Diagnostic Test Data
  bamlss                  Bayesian Additive Models for Location, Scale,
                          and Shape (and Beyond)
  bamm                    Species Distribution Models as a Function of
                          Biotic, Abiotic and Movement Factors (BAM)
  bamp                    Bayesian Age-Period-Cohort Modeling and
                          Prediction
  bamsignals              Extract read count signals from bam files
  banR                    Client for the 'BAN' API
  bandicoot               Light-Weight 'python'-Like Object-Oriented
                          System
  bandit                  Functions for Simple a/B Split Test and
                          Multi-Armed Bandit Analysis
  banditpam               Almost Linear-Time k-Medoids Clustering
  banditsCI               Bandit-Based Experiments and Policy Evaluation
  bandsfdp                Compute Upper Prediction Bounds on the FDP in
                          Competition-Based Setups
  banffIT                 Automated Standardized Assignment of the Banff
                          Classification
  bang                    Bayesian Analysis, No Gibbs
  bangladesh              Provides Ready to Use Shapefiles for
                          Geographical Map of Bangladesh
  bannerCommenter         Make Banner Comments with a Consistent Format
  banter                  BioAcoustic eveNT classifiER
  banxicoR                Download Data from the Bank of Mexico
  baorista                Bayesian Aoristic Analyses
  bapred                  Batch Effect Removal and Addon Normalization
                          (in Phenotype Prediction using Gene Data)
  barcode                 Render Barcode Distribution Plots
  bark                    Bayesian Additive Regression Kernels
  barrel                  Covariance-Based Ellipses and Annotation Tools
                          for Ordination Plots
  barrks                  Calculate Bark Beetle Phenology Using Different
                          Models
  barry                   Your Go-to Motif Accountant
  bartCause               Causal Inference using Bayesian Additive
                          Regression Trees
  bartMachine             Bayesian Additive Regression Trees
  bartMachineJARs         bartMachine JARs
  bartMan                 Create Visualisations for BART Models
  bartXViz                Visualization of BART and BARP using SHAP
  bartcs                  Bayesian Additive Regression Trees for
                          Confounder Selection
  basad                   Bayesian Variable Selection with Shrinking and
                          Diffusing Priors
  base.rms                Convert Regression Between Base Function and
                          'rms' Package
  base64                  Base64 Encoder and Decoder
  base64enc               Tools for 'base64' Encoding
  base64url               Fast and URL-Safe Base64 Encoder and Decoder
  baseballr               Acquiring and Analyzing Baseball Data
  basecamb                Utilities for Streamlined Data Import,
                          Imputation and Modelling
  basedosdados            'Base Dos Dados' R Client
  basefun                 Infrastructure for Computing with Basis
                          Functions
  baseline                Baseline Correction of Spectra
  baselinenowcast         Baseline Nowcasting for Right-Truncated
                          Epidemiological Data
  basemaps                Accessing Spatial Basemaps in R
  basemodels              Baseline Models for Classification and
                          Regression
  basepenguins            Convert Files that Use 'palmerpenguins' to Work
                          with 'datasets'
  baseq                   Basic Sequence Processing Tool for Biological
                          Data
  baserater               Base-Rate Item Evaluation and Typicality
                          Scoring Using Large Language Models
  bases                   Basis Expansions for Regression Modeling
  basetheme               Themes for Base Graphics Plots
  baseverse               Modern Base-R Functions
  basf                    Plot Simple Features with 'base' Sensibilities
  basicMCMCplots          Trace Plots, Density Plots and Chain
                          Comparisons for MCMC Samples
  basicdrm                Fit Hill Dose Response Models
  basicspace              Recovering a Basic Space from Issue Scales
  basictabler             Construct Rich Tables for Output to
                          'HTML'/'Excel'
  basifoR                 Retrieval and Processing of the Spanish
                          National Forest Inventory
  basilisk                Freezing Python Dependencies Inside
                          Bioconductor Packages
  basket                  Basket Trial Analysis
  baskexact               Analytical Calculation of Basket Trial
                          Operating Characteristics
  baskoptr                Utility-Based Optimization for Basket Trial
                          Designs
  basksim                 Simulation-Based Calculation of Basket Trial
                          Operating Characteristics
  baskwrap                Wrapper Package for Several Basket Trial R
                          Packages
  batata                  Managing Packages Removal and Installation
  batch                   Batching Routines in Parallel and Passing
                          Command-Line Arguments to R
  batchelor               Single-Cell Batch Correction Methods
  batchmeans              Consistent Batch Means Estimation of Monte
                          Carlo Standard Errors
  batchmix                Semi-Supervised Bayesian Mixture Models
                          Incorporating Batch Correction
  batchscr                Batch Script Helpers
  batchtma                Batch Effect Adjustments
  batchtools              Tools for Computation on Batch Systems
  bate                    Computes Bias-Adjusted Treatment Effect
  batman                  Convert Categorical Representations of Logicals
                          to Actual Logicals
  batsch                  Real-Time PCR Data Sets by Batsch et al. (2008)
  batteryreduction        An R Package for Data Reduction by Battery
                          Reduction
  bayMDS                  Bayesian Multidimensional Scaling and Choice of
                          Dimension
  bayclumpr               Bayesian Analysis of Clumped Isotope Datasets
  baycn                   Bayesian Inference for Causal Networks
  bayefdr                 Bayesian Estimation and Optimisation of
                          Expected False Discovery Rate
  bayesCureRateModel      Bayesian Cure Rate Modeling for Time-to-Event
                          Data
  bayesDP                 Implementation of the Bayesian Discount Prior
                          Approach for Clinical Trials
  bayesDccGarch           Methods and Tools for Bayesian Dynamic
                          Conditional Correlation GARCH(1,1) Model
  bayesDiagnostics        Comprehensive Bayesian Model Diagnostics and
                          Comparison Tools
  bayesEO                 Bayesian Smoothing of Remote Sensing Image
                          Classification
  bayesGARCH              Bayesian Estimation of the GARCH(1,1) Model
                          with Student-t Innovations
  bayesImageS             Bayesian Methods for Image Segmentation using a
                          Potts Model
  bayesLife               Bayesian Projection of Life Expectancy
  bayesMRM                Bayesian Multivariate Receptor Modeling
  bayesMeanScale          Bayesian Post-Estimation on the Mean Scale
  bayesMig                Bayesian Projection of Migration
  bayesPO                 Bayesian Inference for Presence-Only Data
  bayesPop                Probabilistic Population Projection
  bayesQR                 Bayesian Quantile Regression
  bayesQRsurvey           Bayesian Quantile Regression Models for Complex
                          Survey Data Analysis
  bayesROE                Bayesian Regions of Evidence
  bayesRecon              Probabilistic Reconciliation via Conditioning
  bayesSSM                Bayesian Methods for State Space Models
  bayesSurv               Bayesian Survival Regression with Flexible
                          Error and Random Effects Distributions
  bayesTFR                Bayesian Fertility Projection
  bayesWatch              Bayesian Change-Point Detection for Process
                          Monitoring with Fault Detection
  bayesammi               Bayesian Estimation of the Additive Main
                          Effects and Multiplicative Interaction Model
  bayesanova              Bayesian Inference in the Analysis of Variance
                          via Markov Chain Monte Carlo in Gaussian
                          Mixture Models
  bayesboot               An Implementation of Rubin's (1981) Bayesian
                          Bootstrap
  bayescount              Power Calculations and Bayesian Analysis of
                          Count Distributions and FECRT Data using MCMC
  bayesefa                Bayesian Exploratory Factor Analysis
  bayesestdft             Estimating the Degrees of Freedom of the
                          Student's t-Distribution under a Bayesian
                          Framework
  bayesforecast           Bayesian Time Series Modeling with Stan
  bayesian                Bindings for Bayesian TidyModels
  bayesianETAS            Bayesian Estimation of the Temporal and
                          Spatio-Temporal ETAS Models for Earthquake
                          Occurrences
  bayesianOU              Bayesian Nonlinear Ornstein-Uhlenbeck Models
                          with Stochastic Volatility
  bayesianVARs            MCMC Estimation of Bayesian
                          Vectorautoregressions
  bayesiansurpriser       Bayesian Surprise for De-Biasing Thematic Maps
  bayesics                Bayesian Analyses for One- and Two-Sample
                          Inference and Regression Methods
  bayeslist               Bayesian Analysis of List Experiments with
                          Prior Information
  bayeslm                 Efficient Sampling for Gaussian Linear
                          Regression with Arbitrary Priors
  bayeslongitudinal       Adjust Longitudinal Regression Models Using
                          Bayesian Methodology
  bayesm                  Bayesian Inference for
                          Marketing/Micro-Econometrics
  bayesmeta               Bayesian Random-Effects Meta-Analysis and
                          Meta-Regression
  bayesmix                Bayesian Mixture Models with JAGS
  bayesmlogit             A Multistate Life Table (MSLT) Methodology
                          Based on Bayesian Approach
  bayesmove               Non-Parametric Bayesian Analyses of Animal
                          Movement
  bayesmsm                Fitting Bayesian Marginal Structural Models for
                          Longitudinal Observational Data
  bayesnec                A Bayesian No-Effect- Concentration (NEC)
                          Algorithm
  bayesplay               The Bayes Factor Playground
  bayesplot               Plotting for Bayesian Models
  bayespm                 Bayesian Statistical Process Monitoring
  bayespmtools            Bayesian Sample Size and Precision
                          Considerations for Risk Prediction Models
  bayesqm                 Bayesian Q Methodology: Probabilistic Factor
                          Analysis
  bayesreg                Bayesian Regression Models with Global-Local
                          Shrinkage Priors
  bayesrules              Datasets and Supplemental Functions from Bayes
                          Rules! Book
  bayest                  Effect Size Targeted Bayesian Two-Sample
                          t-Tests via Markov Chain Monte Carlo in
                          Gaussian Mixture Models
  bayestestR              Understand and Describe Bayesian Models and
                          Posterior Distributions
  bayesvl                 Visually Learning the Graphical Structure of
                          Bayesian Networks and Performing MCMC with
                          'Stan'
  bayfoxr                 Global Bayesian Foraminifera Core Top
                          Calibration
  baygel                  Bayesian Shrinkage Estimators for Precision
                          Matrices in Gaussian Graphical Models
  baymedr                 Computation of Bayes Factors for Common
                          Biomedical Designs
  bayou                   Bayesian Fitting of Ornstein-Uhlenbeck Models
                          to Phylogenies
  bayprior                Bayesian Prior Elicitation and Diagnostics for
                          Clinical Trials
  baystability            Bayesian Stability Analysis of Genotype by
                          Environment Interaction (GEI)
  baytaAAR                Bayesian Transition Analysis with Markov Chain
                          Monte Carlo
  baytrends               Long Term Water Quality Trend Analysis
  bbdetection             Identification of Bull and Bear States of the
                          Market
  bbk                     Client for Central Bank APIs
  bbknnR                  Perform Batch Balanced KNN in R
  bbl                     Boltzmann Bayes Learner
  bbmix                   Bayesian Model for Genotyping using RNA-Seq
  bbmle                   Tools for General Maximum Likelihood Estimation
  bbnet                   Create Simple Predictive Models on Bayesian
                          Belief Networks
  bbotk                   Black-Box Optimization Toolkit
  bbreg                   Bessel and Beta Regressions via
                          Expectation-Maximization Algorithm for
                          Continuous Bounded Data
  bbssr                   Blinded Sample Size Re-Estimation for Binary
                          Endpoints
  bbw                     Blocked Weighted Bootstrap
  bc3net                  Gene Regulatory Network Inference with Bc3net
  bcROCsurface            Bias-Corrected Methods for Estimating the ROC
                          Surface of Continuous Diagnostic Tests
  bcRP                    Access 'BCRPDATA' API
  bcaboot                 Bias Corrected Bootstrap Confidence Intervals
  bcc                     Beta Control Charts
  bccp                    Bias Correction under Censoring Plan
  bcdata                  Search and Retrieve Data from the BC Data
                          Catalogue
  bcf                     Causal Inference using Bayesian Causal Forests
  bcfrailph               Semiparametric Bivariate Correlated Frailty
                          Models Fit
  bcfrailphdv             Bivariate Correlated Frailty Models with Varied
                          Variances
  bclogit                 Conditional Logistic Regression
  bcmaps                  Map Layers and Spatial Utilities for British
                          Columbia
  bcmixed                 Mixed Effect Model with the Box-Cox
                          Transformation
  bcp                     Bayesian Analysis of Change Point Problems
  bcpa                    Behavioral Change Point Analysis of Animal
                          Movement
  bcputility              Wrapper for SQL Server bcp Utility
  bcrypt                  'Blowfish' Key Derivation and Password Hashing
  bcv                     Cross-Validation for the SVD
                          (Bi-Cross-Validation)
  bdDwC                   Darwinizer: Darwin Core (DwC) Field Names
                          Standardization
  bda                     Binned Data Analysis
  bdc                     Biodiversity Data Cleaning
  bddkR                   Gathering Monthly Banking Sector Data from BDDK
                          of Turkey
  bde                     Bounded Density Estimation
  bdf3                    Efficient Block Designs for 3-Level Factorial
                          Experiments in Block Size 3
  bdl                     Interface and Tools for 'BDL' API
  bdlim                   Bayesian Distributed Lag Interaction Models
  bdlnm                   Bayesian Distributed Lag Non-Linear Models
                          (B-DLNM)
  bdlp                    Transparent and Reproducible Artificial Data
                          Generation
  bdots                   Bootstrapped Differences of Time Series
  bdpar                   Big Data Preprocessing Architecture
  bdpv                    Inference and Design for Predictive Values in
                          Diagnostic Tests
  bdrc                    Bayesian Discharge Rating Curves
  bdribs                  Bayesian Detection of Potential Risk Using
                          Inference on Blinded Safety Data
  bdscale                 Remove Weekends and Holidays from ggplot2 Axes
  bdsm                    Bayesian Dynamic Systems Modeling
  bdsmatrix               Routines for Block Diagonal Symmetric Matrices
  bdsvd                   Block Structure Detection Using Singular
                          Vectors
  bea.R                   Bureau of Economic Analysis API
  beachmat                Compiling Bioconductor to Handle Each Matrix
                          Type
  beadplexr               Analysis of Multiplex Cytometric Bead Assays
  beakr                   A Minimalist Web Framework for R
  beam                    Fast Bayesian Inference in Large Gaussian
                          Graphical Models
  bean                    Data Thinning of Species Occurrences in
                          Environmental Space
  beanplot                Visualization via Beanplots (Like
                          Boxplot/Stripchart/Violin Plot)
  beans                   Data on Dried Beans
  bearishTrader           Trading Strategies for Bearish Outlook
  beast                   Bayesian Estimation of Change-Points in the
                          Slope of Multivariate Time-Series
  beastier                Call 'BEAST2'
  beastt                  Bayesian Evaluation, Analysis, and Simulation
                          Software Tools for Trials
  beautier                'BEAUti' from R
  beaver                  Bayesian Model Averaging of Covariate Adjusted
                          Negative-Binomial Dose-Response
  bedr                    Genomic Region Processing using Tools Such as
                          'BEDTools', 'BEDOPS' and 'Tabix'
  bedrockbio              Open-Access Computational Biology Datasets
  beeca                   Binary Endpoint Estimation with Covariate
                          Adjustment
  beepr                   Easily Play Notification Sounds on any Platform
  beeswarm                The Bee Swarm Plot, an Alternative to
                          Stripchart
  beezdemand              Behavioral Economic Easy Demand
  beezdiscounting         Behavioral Economic Easy Discounting
  befproj                 Makes a Local Population Projection
  behaviorchange          Tools for Behavior Change Researchers and
                          Professionals
  behavr                  Canonical Data Structure for Behavioural Data
  belex                   Download Historical Data from the Belgrade
                          Stock Exchange
  belg                    Boltzmann Entropy of a Landscape Gradient
  bellreg                 Count Regression Models Based on the Bell
                          Distribution
  bench                   High Precision Timing of R Expressions
  benchden                28 Benchmark Densities from Berlinet/Devroye
                          (1994)
  benchmarkme             Crowd Sourced System Benchmarks
  benchmarkmeData         Data Set for the 'benchmarkme' Package
  benford                 Benford's Analysis on Large Data Sets
  benford.analysis        Benford Analysis for Data Validation and
                          Forensic Analytics
  bennu                   Bayesian Estimation of Naloxone Kit Number
                          Under-Reporting
  bentcableAR             Bent-Cable Regression for Independent Data or
                          Autoregressive Time Series
  benthos                 Marine Benthic Ecosystem Analysis
  berryFunctions          Function Collection Related to Plotting and
                          Hydrology
  bertopicr               Topic Modeling with 'BERTopic'
  bespatial               Boltzmann Entropy for Spatial Data
  bestNormalize           Normalizing Transformation Functions
  bestSDP                 Burden Estimate of Common Communicable Diseases
                          in Settlements of Displaced Populations
  bestglm                 Best Subset GLM and Regression Utilities
  besthr                  Generating Bootstrap Estimation Distributions
                          of HR Data
  betaARMA                Beta Autoregressive Moving Average Models
  betaBayes               Bayesian Beta Regression
  betaDelta               Confidence Intervals for Standardized
                          Regression Coefficients
  betaMC                  Monte Carlo for Regression Effect Sizes
  betaNB                  Bootstrap for Regression Effect Sizes
  betaSandwich            Robust Confidence Intervals for Standardized
                          Regression Coefficients
  betaStability           Quantify the Compositional Stability of Each
                          Community Based on a Single Sampling Event
  betacal                 Beta Calibration
  betaclust               A Family of Beta Mixture Models for Clustering
                          Beta-Valued DNA Methylation Data
  betafunctions           Functions for Working with Two- And
                          Four-Parameter Beta Probability Distributions
                          and Psychometric Analysis of Classifications
  betapart                Partitioning Beta Diversity into Turnover and
                          Nestedness Components
  betaper                 Taxonomic Uncertainty on Multivariate Analyses
                          of Ecological Data
  betareg                 Beta Regression
  betaregscale            Beta Regression for Interval-Censored
                          Scale-Derived Outcomes
  betaselectr             Betas-Select in Structural Equation Models and
                          Linear Models
  betategarch             Simulation, Estimation and Forecasting of
                          Beta-Skew-t-EGARCH Models
  bethel                  Bethel's algorithm.
  bets.covid19            The BETS Model for Early Epidemic Data
  bexy                    Visualize and Parse the Output of 'BeXY'
  beyondWhittle           Bayesian Spectral Inference for Time Series
  bezier                  Toolkit for Bezier Curves and Splines
  bfast                   Breaks for Additive Season and Trend
  bfbin2arm               Bayes Factor Design for Two-Arm Binomial Trials
  bfboin                  Operating Characteristics for the Bayesian
                          Optimal Interval Design with Back Filling
  bfboinet                Backfill Bayesian Optimal Interval Design Using
                          Efficacy and Toxicity
  bfcluster               Buttler-Fickel Distance and R2 for Mixed-Scale
                          Cluster Analysis
  bfp                     Bayesian Fractional Polynomials
  bfpwr                   Power and Sample Size Calculations for Bayes
                          Factor Analysis
  bfsMaps                 Plot Maps from Switzerland by Swiss Federal
                          Statistical Office
  bfsl                    Best-Fit Straight Line
  bfw                     Bayesian Framework for Computational Modeling
  bgev                    Bimodal GEV Distribution with Location
                          Parameter
  bgeva                   Binary Generalized Extreme Value Additive
                          Models
  bggum                   Bayesian Estimation of Generalized Graded
                          Unfolding Model Parameters
  bgmfiles                Example BGM Files for the Atlantis Ecosystem
                          Model
  bgms                    Bayesian Analysis of Networks of Binary and/or
                          Ordinal Variables
  bgumbel                 Bimodal Gumbel Distribution
  bgw                     Bunch-Gay-Welsch Statistical Estimation
  bhetGP                  Bayesian Heteroskedastic Gaussian Processes
  bhm                     Biomarker Threshold Models
  bhmbasket               Bayesian Hierarchical Models for Basket Trials
  bhpm                    Bayesian Hierarchical Poisson Models for
                          Multiple Grouped Outcomes with Clustering
  bib2df                  Parse a BibTeX File to a Data Frame
  biblio                  Interacting with BibTeX Databases
  bibliometrix            Comprehensive Science Mapping Analysis
  bibliometrixData        Bibliometrix Example Datasets
  biblionetwork           Create Different Types of Bibliometric Networks
  bibliorefer             Generator of Main Scientific References
  biblioverlap            Document-Level Matching Between Bibliographic
                          Datasets
  bibnets                 Importing, Constructing, and Exporting
                          Bibliometric Networks
  bibtex                  Bibtex Parser
  bidask                  Efficient Estimation of Bid-Ask Spreads from
                          Open, High, Low, and Close Prices
  bidser                  Work with 'BIDS' (Brain Imaging Data Structure)
                          Projects
  bidsr                   A Brain Imaging Data Structure ('BIDS') Parser
  bidux                   Behavioral Insight Design: A Toolkit for
                          Integrating Behavioral Science in UI/UX Design
  bife                    Binary Choice Models with Fixed Effects
  bifrost                 Branch-Level Inference Framework for
                          Recognizing Optimal Shifts in Traits
  bifurcatingr            Bifurcating Autoregressive Models
  bigANNOY                Approximate k-Nearest Neighbour Search for
                          'bigmemory' Matrices with Annoy
  bigBits                 Perform Boolean Operations on Large Numbers
  bigD                    Flexibly Format Dates and Times to a Given
                          Locale
  bigDM                   Scalable Bayesian Disease Mapping Models for
                          High-Dimensional Data
  bigGP                   Distributed Gaussian Process Calculations
  bigKNN                  Exact Search and Graph Construction for
                          'bigmemory' Matrices
  bigMICE                 Multiple Imputation of Big Data
  bigPCAcpp               Principal Component Analysis for 'bigmemory'
                          Matrices
  bigPLSR                 Partial Least Squares Regression Models with
                          Big Matrices
  bigPLScox               Partial Least Squares for Cox Models with Big
                          Matrices
  bigQF                   Quadratic Forms in Large Matrices
  bigReg                  Generalized Linear Models (GLM) for Large Data
                          Sets
  bigSurvSGD              Big Survival Analysis Using Stochastic Gradient
                          Descent
  bigalgebra              'BLAS' and 'LAPACK' Routines for Native R
                          Matrices and 'big.matrix' Objects
  biganalytics            Utilities for 'big.matrix' Objects from Package
                          'bigmemory'
  bigassertr              Assertion and Message Functions
  bigdatadist             Distances for Machine Learning and Statistics
                          in the Context of Big Data
  bigergm                 Fit, Simulate, and Diagnose Hierarchical
                          Exponential-Family Models for Big Networks
  biglasso                Extending Lasso Model Fitting to Big Data
  bigleaf                 Physical and Physiological Ecosystem Properties
                          from Eddy Covariance Data
  biglm                   Bounded Memory Linear and Generalized Linear
                          Models
  biglmm                  Bounded Memory Linear and Generalized Linear
                          Models
  bigmatch                Making Optimal Matching Size-Scalable Using
                          Optimal Calipers
  bigmds                  Multidimensional Scaling for Big Data
  bigmemory               Manage Massive Matrices with Shared Memory and
                          Memory-Mapped Files
  bigmemory.sri           A Shared Resource Interface for Bigmemory
                          Project Packages
  bignum                  Arbitrary-Precision Integer and Floating-Point
                          Mathematics
  bigparallelr            Easy Parallel Tools
  bigreadr                Read Large Text Files
  bigrquery               An Interface to Google's 'BigQuery' 'API'
  bigrquerystorage        An Interface to Google's 'BigQuery Storage' API
  bigsimr                 Fast Generation of High-Dimensional Random
                          Vectors
  bigsnpr                 Analysis of Massive SNP Arrays
  bigsparser              Sparse Matrix Format with Data on Disk
  bigsplines              Smoothing Splines for Large Samples
  bigstatsr               Statistical Tools for Filebacked Big Matrices
  bigstep                 Stepwise Selection for Large Data Sets
  bigtabulate             Table, Apply, and Split Functionality for
                          Matrix and 'big.matrix' Objects
  bigtcr                  Nonparametric Analysis of Bivariate Gap Time
                          with Competing Risks
  bigtime                 Sparse Estimation of Large Time Series Models
  bigutilsr               Utility Functions for Large-scale Data
  bikeshare14             Bay Area Bike Share Trips in 2014
  bikm1                   Co-Clustering Adjusted Rand Index and Bikm1
                          Procedure for Contingency and Binary Data-Sets
  bild                    A Package for BInary Longitudinal Data
  billboard               Contains Data of Billboard Hot 100 Songs
  billboarder             Create Interactive Chart with the JavaScript
                          'Billboard' Library
  bimets                  Time Series and Econometric Modeling
  bin2norm                Hierarchical Probit Estimation for Dichotomized
                          Data
  binGroup                Evaluation and Experimental Design for Binomial
                          Group Testing
  binMto                  Many-to-One Comparisons of Proportions
  binancer                API Client to 'Binance'
  binaryGP                Fit and Predict a Gaussian Process Model with
                          (Time-Series) Binary Response
  binaryRL                Reinforcement Learning Tools for
                          Two-Alternative Forced Choice Tasks
  binb                    'binb' is not 'Beamer'
  binda                   Multi-Class Discriminant Analysis using Binary
                          Predictors
  bindata                 Generation of Artificial Binary Data
  bindr                   Parametrized Active Bindings
  bindrcpp                An 'Rcpp' Interface to Active Bindings
  binequality             Methods for Analyzing Binned Income Data
  binest                  Estimation of Group Means and SDs from Binned
                          Count Data
  binford                 Binford's Hunter-Gatherer Data
  binfunest               Estimates Parameters of Functions Driving
                          Binomial Random Variables
  bingadsR                Get Bing Ads Data via the 'Windsor.ai' API
  binhf                   Haar-Fisz Functions for Binomial Data
  binman                  A Binary Download Manager
  binom                   Binomial Confidence Intervals for Several
                          Parameterizations
  binomCI                 Confidence Intervals for a Binomial Proportion
  binomialtrend           Calculates the Statistical Significance of a
                          Trend in a Set of Measurements
  binovisualfields        Depth-Dependent Binocular Visual Fields
                          Simulation
  binpackr                Fast 1d Bin Packing
  binr                    Cut Numeric Values into Evenly Distributed
                          Groups
  binsegRcpp              Efficient Implementation of Binary Segmentation
  binseqtest              Exact Binary Sequential Designs and Analysis
  binsmooth               Generate PDFs and CDFs from Binned Data
  binspp                  Bayesian Inference for Neyman-Scott Point
                          Processes
  binsreg                 Binscatter Estimation and Inference
  binst                   Data Preprocessing, Binning for Classification
                          and Regression
  binxr                   'Binance' REST API Client
  bio.infer               Predict Environmental Conditions from
                          Biological Observations
  bio3d                   Biological Structure Analysis
  bioC.logs               BioConductor Package Downloads Stats
  bioLeak                 Leakage-Safe Modeling and Auditing for Genomic
                          and Clinical Data
  bioRad                  Biological Analysis and Visualization of
                          Weather Radar Data
  bioSNR                  Bioacoustic Basic Operations with Decibels and
                          the Passive Sonar Equation
  bioacoustics            Analyse Audio Recordings and Automatically
                          Extract Animal Vocalizations
  biobricks               Access Data Dependencies Installed Through
                          'Biobricks.ai'
  biocViews               Categorized views of R package repositories
  bioclim                 Bioclimatic Analysis and Classification
  biocmake                CMake for Bioconductor
  biocompute              Create and Manipulate BioCompute Objects
  biodb                   Biodb, a Library and a Development Framework
                          for Connecting to Chemical and Biological
                          Databases
  biodosetools            'shiny' Application for Biological Dosimetry
  biogas                  Process Biogas Data and Predict Biogas
                          Production
  biogeom                 Biological Geometries
  biogram                 N-Gram Analysis of Biological Sequences
  biogrowth               Modelling of Population Growth
  bioimagetools           Tools for Microscopy Imaging
  bioinactivation         Mathematical Modelling of (Dynamic) Microbial
                          Inactivation
  biolink                 Create Hyperlinks to Biological Databases and
                          Resources
  biologicalActivityIndices
                          Biological Activity Indices
  biomaRt                 Interface to BioMart databases (i.e. Ensembl)
  biomartr                Genomic Data Retrieval
  biometrics              A Package for Biometrics and Modelling
  biometryassist          Functions to Assist Design and Analysis of
                          Agronomic Experiments
  biomformat              An interface package for the BIOM file format
  biomod2                 Ensemble Platform for Species Distribution
                          Modeling
  bionetdata              Biological and Chemical Data Networks
  biopixR                 Extracting Insights from Biological Images
  bioregion               Comparison of Bioregionalization Methods
  bios2mds                From Biological Sequences to Multidimensional
                          Scaling
  biosampleR              Biodiversity Index Calculation and Bootstrap
                          Confidence Interval Estimation
  biosensors.usc          Distributional Data Analysis Techniques for
                          Biosensor Data
  bioseq                  A Toolbox for Manipulating Biological Sequences
  biosignalEMG            Tools for Electromyogram Signals (EMG) Analysis
  biospear                Biomarker Selection in Penalized Regression
                          Models
  biostat3                Utility Functions, Datasets and Extended
                          Examples for Survival Analysis
  biostats                Biostatistics and Clinical Data Analysis
  biostats101             Practical Functions for Biostatistics Beginners
  biotic                  Calculation of Freshwater Biotic Indices
  biotools                Tools for Biometry and Applied Statistics in
                          Agricultural Science
  biovizBase              Basic graphic utilities for visualization of
                          genomic data.
  bipartite               Visualising Bipartite Networks and Calculating
                          Some (Ecological) Indices
  bipartiteD3             Interactive Bipartite Graphs
  bipd                    Bayesian Individual Patient Data Meta-Analysis
                          using 'JAGS'
  bipl5                   Construct Reactive Calibrated Axes Biplots
  biplotEZ                EZ-to-Use Biplots
  biplotbootGUI           Bootstrap on Classical Biplots and Clustering
                          Disjoint Biplot
  birankr                 Ranking Nodes in Bipartite and Weighted
                          Networks
  birdcolors              Create Palettes from the Colors of the World's
                          Birds
  birddog                 Sniffing Emergence and Trajectories in Academic
                          Papers and Patents
  birdie                  Bayesian Instrumental Regression for Disparity
                          Estimation
  birdnetR                Deep Learning for Automated (Bird) Sound
                          Identification
  birdring                Methods to Analyse Ring Re-Encounter Data
  birdscanR               Migration Traffic Rate Calculation Package for
                          'Birdscan MR1' Radars
  birk                    MA Birk's Functions
  birtr                   The R Package for "The Basics of Item Response
                          Theory Using R"
  biscale                 Tools and Palettes for Bivariate Thematic
                          Mapping
  bispdep                 Statistical Tools for Bivariate Spatial
                          Dependence Analysis
  bit                     Classes and Methods for Fast Memory-Efficient
                          Boolean Selections
  bit64                   A S3 Class for Vectors of 64bit Integers
  bitfield                Handle Bitfields to Record Meta Data
  bitmexr                 R Client for BitMEX
  bitops                  Bitwise Operations
  bitstreamio             Read and Write Bits from Files, Connections and
                          Raw Vectors
  bittermelon             Bitmap Tools
  bivarhr                 Bivariate Hurdle Regression with Bayesian Model
                          Averaging
  bivariateLeaflet        Create Bivariate Choropleth Maps with 'Leaflet'
  bivariatemaps           Creates Bivariate Maps
  bivgeom                 Roy's Bivariate Geometric Distribution
  bivpois                 Bivariate Poisson Distribution
  bivrp                   Bivariate Residual Plots with Simulation
                          Polygons
  biwavelet               Conduct Univariate and Bivariate Wavelet
                          Analyses
  biwt                    Compute the Biweight Mean Vector and Covariance
                          & Correlation Matrice
  bizdays                 Business Days Calculations and Utilities
  bizicount               Bivariate Zero-Inflated Count Models Using
                          Copulas
  bkmr                    Bayesian Kernel Machine Regression
  bkmrhat                 Parallel Chain Tools for Bayesian Kernel
                          Machine Regression
  blackbox                Black Box Optimization and Exploration of
                          Parameter Space
  blackmarbler            Black Marble Data and Statistics
  blaise                  Read and Write FWF Files in the 'Blaise' Format
  blandr                  Bland-Altman Method Comparison
  blapsr                  Bayesian Inference with Laplace Approximations
                          and P-Splines
  blaster                 Native R Implementation of an Efficient
                          BLAST-Like Algorithm
  blastula                Easily Send HTML Email Messages
  blatent                 Bayesian Latent Variable Models
  blavaan                 Bayesian Latent Variable Analysis
  blendR                  Blended Survival Curves
  blends                  Blend Colours and Palettes
  blindrecalc             Blinded Sample Size Recalculation
  blindspiker             Laboratory Blind Spike Sample Analyses
  blink                   Record Linkage for Empirically Motivated Priors
  blisa                   Infer Cell-Cell Communication from Spatial
                          Transcriptomics
  bliss                   Bayesian Functional Linear Regression with
                          Sparse Step Functions
  blit                    Bioinformatics Library for Integrated Tools
  blm                     Binomial Linear Regression
  blme                    Bayesian Linear Mixed-Effects Models
  blmeco                  Data Files and Functions Accompanying the Book
                          "Bayesian Data Analysis in Ecology using R,
                          BUGS and Stan"
  blob                    A Simple S3 Class for Representing Vectors of
                          Binary Data ('BLOBS')
  blockCV                 Spatial and Environmental Blocking for K-Fold
                          and LOO Cross-Validation
  blockForest             Block Forests: Random Forests for Blocks of
                          Clinical and Omics Covariate Data
  blockTools              Block, Assign, and Diagnose Potential
                          Interference in Randomized Experiments
  blockedFF               Generation of Blocked Fractional Factorial
                          Designs (Two-Level and Three-Level)
  blocking                Various Blocking Methods for Entity Resolution
  blocklength             Select an Optimal Block-Length to Bootstrap
                          Dependent Data (Block Bootstrap)
  blockmatrix             blockmatrix: Tools to solve algebraic systems
                          with partitioned matrices
  blockmodeling           Generalized and Classical Blockmodeling of
                          Valued Networks
  blockmodels             Latent and Stochastic Block Model Estimation by
                          a 'V-EM' Algorithm
  blockr                  A Block-Based Framework for Data Manipulation
                          and Visualization
  blockr.core             Graphical Web-Framework for Data Manipulation
                          and Visualization
  blockr.dag              A Directed Acyclic Graph Extension for 'blockr'
  blockr.dock             A Docking Layout Manager for 'blockr'
  blockr.dplyr            Interactive 'dplyr' Data Transformation Blocks
  blockr.ggplot           Interactive 'ggplot2' Visualization Blocks
  blockr.io               Interactive File Import and Export Blocks
  blockrand               Randomization for Block Random Clinical Trials
  blocksdesign            Nested and Crossed Block Designs for Factorial
                          and Unstructured Treatment Sets
  blockstrap              Sample Dataframes by a Group
  blocs                   Estimate and Visualize Voting Blocs' Partisan
                          Contributions
  blogdown                Create Blogs and Websites with R Markdown
  blorr                   Tools for Developing Binary Logistic Regression
                          Models
  blosc                   Compress and Decompress Data Using the 'BLOSC'
                          Library
  blox                    Block Diagonal Matrix Approximation
  blrm                    Dose Escalation Design in Phase I Oncology
                          Trial Using Bayesian Logistic Regression
                          Modeling
  blsBandit               Data Viewer for Bureau of Labor Statistics Data
  blsR                    Make Requests from the Bureau of Labor
                          Statistics API
  bluebike                Blue Bike Comprehensive Data
  bluster                 Clustering Algorithms for Bioconductor
  blvim                   Boltzmann–Lotka–Volterra Interaction Model
  bmabart                 Bayesian Mediation Analysis Using BART
  bmass                   Bayesian Multivariate Analysis of Summary
                          Statistics
  bmco                    Bayesian Analysis for Multivariate Categorical
                          Outcomes
  bmem                    Mediation Analysis with Missing Data Using
                          Bootstrap
  bmemLavaan              Mediation Analysis with Missing Data and
                          Non-Normal Data
  bmet                    Bayesian Multigroup Equivalence Testing
  bmixture                Bayesian Estimation for Finite Mixture of
                          Distributions
  bml                     Bayesian Multiple-Membership Multilevel Models
                          with Parameterizable Weight Functions
  bmm                     Easy and Accessible Bayesian Measurement Models
                          Using 'brms'
  bmp                     Read Windows Bitmap (BMP) Images
  bmstdr                  Bayesian Modeling of Spatio-Temporal Data with
                          R
  bnRep                   A Repository of Bayesian Networks from the
                          Academic Literature
  bnclassify              Learning Discrete Bayesian Network Classifiers
                          from Data
  bndovb                  Bounding Omitted Variable Bias Using Auxiliary
                          Data
  bnlearn                 Bayesian Network Structure Learning, Parameter
                          Learning and Inference
  bnma                    Bayesian Network Meta-Analysis using 'JAGS'
  bnmonitor               An Implementation of Sensitivity Analysis in
                          Bayesian Networks
  bnnSurvival             Bagged k-Nearest Neighbors Survival Prediction
  bnns                    Bayesian Neural Network with 'Stan'
  bnpMTP                  Bayesian Nonparametric Sensitivity Analysis of
                          Multiple Testing Procedures for p Values
  bnpa                    Bayesian Networks & Path Analysis
  bnpsd                   Simulate Genotypes from the BN-PSD Admixture
                          Model
  bnstruct                Bayesian Network Structure Learning from Data
                          with Missing Values
  bnviewer                Bayesian Networks Interactive Visualization and
                          Explainable Artificial Intelligence
  boa                     Bayesian Output Analysis Program (BOA) for MCMC
  bodenmiller             Profiling of Peripheral Blood Mononuclear Cells
                          using CyTOF
  bodsr                   Call the Bus Open Data Service ('BODS') API
                          Through R
  bodycomp                Percent Body Fat Values Using Anthropometric
                          Prediction Equations
  bodycompref             Reference Values for CT-Assessed Body
                          Composition
  boe                     Download Data from the 'Bank of England'
                          Statistical Database
  boggy                   Real-Time PCR Data Sets by Boggy et al. (2010)
  boids4R                 Reynolds-Style Boids and Swarm Simulation
  boilerpipeR             Interface to the Boilerpipe Java Library
  boilerplate             Managing and Compiling Manuscript Templates
  boinet                  Conduct Simulation Study of Bayesian Optimal
                          Interval Design with BOIN-ET Family
  boiwsa                  Seasonal Adjustment of Weekly Data
  bolasso                 Model Consistent Lasso Estimation Through the
                          Bootstrap
  bolder                  'RStudio' Add-Ins for Formatted Section Titles
  bolsec                  Bolivian Securities
  bolt4jr                 Interface for the 'Neo4j Bolt' Protocol
  bondAnalyst             Methods for Fixed-Income Valuation, Risk and
                          Return
  bonn                    Access INKAR Database
  bonsai                  Model Wrappers for Tree-Based Models
  bonsaiforest            Shrinkage Based Forest Plots
  booami                  Component-Wise Gradient Boosting after Multiple
                          Imputation
  boodd                   Functions for the Book "Bootstrap for Dependent
                          Data, with an R Package"
  boodist                 Some Distributions from the 'Boost' Library and
                          More
  bookdown                Authoring Books and Technical Documents with R
                          Markdown
  booklet                 Multivariate Exploratory Data Analysis
  boostingDEA             A Boosting Approach to Data Envelopment
                          Analysis
  boostmath               'R' Bindings for the 'Boost' Math Functions
  boostmtree              Boosted Multivariate Trees for Longitudinal
                          Data
  boostrq                 Boosting Regression Quantiles
  boot.heterogeneity      A Bootstrap-Based Heterogeneity Test for
                          Meta-Analysis
  boot.pval               Bootstrap p-Values
  bootCT                  Bootstrapping the ARDL Tests for Cointegration
  bootComb                Combine Parameter Estimates via Parametric
                          Bootstrap
  bootES                  Bootstrap Confidence Intervals on Effect Sizes
  bootGOF                 Bootstrap Based Goodness-of-Fit Tests
  bootImpute              Bootstrap Inference for Multiple Imputation
  bootLR                  Bootstrapped Confidence Intervals for
                          (Negative) Likelihood Ratio Tests
  bootLRTpairwise         Bootstrap Hypothesis Tests for Treatment
                          Effects in One-Way ANOVA with Unequal Variances
  bootPLS                 Bootstrap Hyperparameter Selection for PLS
                          Models and Extensions
  bootSVD                 Fast, Exact Bootstrap Principal Component
                          Analysis for High Dimensional Data
  bootStateSpace          Bootstrap for State Space Models
  bootStepAIC             Bootstrap stepAIC
  bootUR                  Bootstrap Unit Root Tests
  bootcluster             Bootstrapping Estimates of Clustering Stability
  bootf2                  Simulation and Comparison of Dissolution
                          Profiles
  bootkmeans              A Bootstrap Augmented k-Means Algorithm for
                          Fuzzy Partitions
  bootmlm                 Bootstrap Resampling for Multilevel Models
  bootnet                 Bootstrap Methods for Various Network
                          Estimation Routines
  bootruin                A Bootstrap Test for the Probability of Ruin in
                          the Classical Risk Process
  bootstrap               Functions for the Book "An Introduction to the
                          Bootstrap"
  bootstrapFP             Bootstrap Algorithms for Finite Population
                          Inference
  bootsurv                Bootstrap Methods for Complete Survey Data
  bootwar                 Nonparametric Bootstrap Test with Pooled
                          Resampling Card Game
  boral                   Bayesian Ordination and Regression AnaLysis
  borrowr                 Estimate Causal Effects with Borrowing Between
                          Data Sources
  bosfr                   Computes Exact Bounds of Spearman's Footrule
                          with Missing Data
  bossR                   Biomarker Optimal Segmentation System
  botor                   'AWS Python SDK' ('boto3') for R
  boundedur               Unit Root Tests for Bounded Time Series
  boundingbox             Create a Bounding Box in an Image
  boussinesq              Analytic Solutions for (Ground-Water)
                          Boussinesq Equation
  boutliers               Outlier Detection and Influence Diagnostics for
                          Meta-Analysis
  box                     Write Reusable, Composable and Modular R Code
  box.linters             Linters for 'box' Modules
  box.lsp                 Provides 'box' Compatibility for
                          'languageserver'
  boxTest                 Boxplot and Significance Test for Two Groups
  boxcoxmix               Box-Cox-Type Transformations for Linear and
                          Logistic Models with Random Effects
  boxfilter               Filter Noisy Data
  boxly                   Interactive Box Plot
  boxplotcluster          Clustering Method Based on Boxplot Statistics
  boxplotdbl              Double Box Plot for Two-Axes Correlation
  boxr                    Interface for the 'Box.com API'
  bp                      Blood Pressure Analysis in R
  bpAcc                   Blood Pressure Device Accuracy Evaluation:
                          Statistical Considerations
  bpDir                   Boxplots for Directional Data
  bpa                     Basic Pattern Analysis
  bpbounds                Nonparametric Bounds for the Average Causal
                          Effect Due to Balke and Pearl and Extensions
  bpca                    Biplot Analysis for Multivariate Data Using
                          Principal Components
  bpcp                    Beta Product Confidence Procedure for Right
                          Censored Data
  bpgmm                   Bayesian Model Selection Approach for
                          Parsimonious Gaussian Mixture Models
  bplsr                   Bayesian partial least squares regression
  bpmnVisualizationR      Visualize Process Execution Data on 'BPMN'
                          Diagrams
  bpnreg                  Bayesian Projected Normal Regression Models for
                          Circular Data
  bpp                     Computations Around Bayesian Predictive Power
  bpr                     Fitting Bayesian Poisson Regression
  bptips                  Server Earnings Calculations
  bpvars                  Forecasting with Bayesian Panel Vector
                          Autoregressions
  bqror                   Bayesian Quantile Regression for Ordinal Models
  bqtl                    Bayesian QTL Mapping Toolkit
  braQCA                  Bootstrapped Robustness Assessment for
                          Qualitative Comparative Analysis
  bracer                  Brace Expansions
  bracketeer              Tournament Generator
  brada                   Bayesian Response-Adaptive Design Analysis
  braggR                  Calculate the Revealed Aggregator of
                          Probability Predictions
  braidReports            Visualize Combined Action Response Surfaces and
                          Report BRAID Analyses
  braidrm                 Fitting Combined Action with the BRAID Response
                          Surface Model
  braids                  The Braid Groups
  brainGraph              Graph Theory Analysis of Brain MRI Data
  brainKCCA               Region-Level Connectivity Network Construction
                          via Kernel Canonical Correlation Analysis
  brainR                  Helper Functions to 'misc3d' and 'rgl' Packages
                          for Brain Imaging
  branchingprocess        Calculate Outbreak Probabilities for a
                          Branching Process Model
  brand.yml               Unified Branding with a Simple YAML File
  brandr                  Brand Identity Management Using brand.yml
                          Standard
  brandwatchR             'Brandwatch' API to R
  brant                   Test for Parallel Regression Assumption
  brar                    Null Hypothesis Bayesian Response-Adaptive
                          Randomization
  brassica                1970s BASIC Interpreter
  bravo                   Bayesian Screening and Variable Selection
  brclimr                 Fetch Zonal Statistics of Weather Indicators
                          for Brazilian Municipalities
  brea                    Bayesian Recurrent Events Analysis
  bread                   Analyze Big Files Without Loading Them in
                          Memory
  breakDown               Model Agnostic Explainers for Individual
                          Predictions
  breakaway               Species Richness Estimation and Modeling
  breakfast               Methods for Fast Multiple
                          Change-Point/Break-Point Detection and
                          Estimation
  breathtestcore          Core Functions to Read and Fit 13c Time Series
                          from Breath Tests
  breathteststan          Stan-Based Fit to Gastric Emptying Curves
  bregr                   Easy and Efficient Batch Processing of
                          Regression Models
  brew                    Templating Framework for Report Generation
  brfinance               Access to Brazilian Macroeconomic and Financial
                          Time Series
  brglm                   Bias Reduction in Binomial-Response Generalized
                          Linear Models
  brglm2                  Bias Reduction in Generalized Linear Models
  briKmeans               Package for Brik, Fabrik and Fdebrik Algorithms
                          to Initialise Kmeans
  brickset                Interface with the Brickset API for Getting
                          Data About LEGO Sets
  brickster               R Toolkit for 'Databricks'
  bridgedist              An Implementation of the Bridge Distribution
                          with Logit-Link as in Wang and Louis (2003)
  bridger2                Genome-Wide RNA Degradation Analysis Using
                          BRIC-Seq Data
  bridgesampling          Bridge Sampling for Marginal Likelihoods and
                          Bayes Factors
  bridgr                  Bridging Data Frequencies for Timely Economic
                          Forecasts
  brif                    A Tree and Forest Tool for Classification and
                          Regression
  brightspaceR            Access D2L 'Brightspace' Data Sets via the
                          'BDS' API
  brinton                 A Graphical EDA Tool
  brio                    Basic R Input Output
  briqr                   Interface to the 'Briq' API
  brisk                   Bayesian Benefit Risk Analysis
  brm                     Binary Regression Model
  brms                    Bayesian Regression Models using 'Stan'
  brms.mmrm               Bayesian MMRMs using 'brms'
  brmsmargins             Bayesian Marginal Effects for 'brms' Models
  brnn                    Bayesian Regularization for Feed-Forward Neural
                          Networks
  broadcast               Broadcasted Array Operations Like 'NumPy'
  brokenstick             Broken Stick Model for Irregular Longitudinal
                          Data
  brolgar                 Browse Over Longitudinal Data Graphically and
                          Analytically in R
  broman                  Karl Broman's R Code
  broom                   Convert Statistical Objects into Tidy Tibbles
  broom.helpers           Helpers for Model Coefficients Tibbles
  broom.mixed             Tidying Methods for Mixed Models
  brotli                  A Compression Format Optimized for the Web
  brsim                   Brainerd-Robinson Similarity Coefficient Matrix
  bruceR                  Broadly Useful Convenient and Efficient R
                          Functions
  brulee                  High-Level Modeling Functions with 'torch'
  bruneimap               Maps and Spatial Data of Brunei
  brunnermunzel           (Permuted) Brunner-Munzel Test
  brxx                    Bayesian Test Reliability Estimation
  bs4Dash                 A 'Bootstrap 4' Version of 'shinydashboard'
  bs4Dashkit              Branding, Theme Application and Navigation
                          Utilities for 'bs4Dash' Dashboards
  bs4cards                Generate Bootstrap Cards
  bsTools                 Create HTML Content with Bootstrap 5 Classes
                          and Layouts
  bsamGP                  Bayesian Spectral Analysis Models using
                          Gaussian Process Priors
  bscui                   Build SVG Custom User Interface
  bsearchtools            Binary Search Tools
  bsgof                   Birnbaum-Saunders Goodness-of-Fit Test
  bshazard                Nonparametric Smoothing of the Hazard Function
  bsicons                 Easily Work with 'Bootstrap' Icons
  bsitar                  Bayesian Super Imposition by Translation and
                          Rotation Growth Curve Analysis
  bskyr                   Interact with 'Bluesky' Social
  bslib                   Custom 'Bootstrap' 'Sass' Themes for 'shiny'
                          and 'rmarkdown'
  bsnsing                 Build Decision Trees with Optimal Multivariate
                          Splits
  bsocialv2               Analysis of Microbial Social Behavior in
                          Bacterial Consortia
  bspcov                  Bayesian Sparse Estimation of a Covariance
                          Matrix
  bspec                   Bayesian Spectral Inference
  bspline                 B-Spline Interpolation and Regression
  bsplus                  Adds Functionality to the R Markdown + Shiny
                          Bootstrap Framework
  bspm                    Bridge to System Package Manager
  bsreg                   Bayesian Spatial Regression Models
  bssbinom                Bayesian Sample Size for Binomial Proportions
  bsseq                   Analyze, manage and store whole-genome
                          methylation data
  bssm                    Bayesian Inference of Non-Linear and
                          Non-Gaussian State Space Models
  bst                     Gradient Boosting
  bstrl                   Bayesian Streaming Record Linkage
  bsts                    Bayesian Structural Time Series
  bsub                    Submitter and Monitor of the 'LSF Cluster'
  bsvarSIGNs              Bayesian SVARs with Sign, Zero, and Narrative
                          Restrictions
  bsvars                  Bayesian Estimation of Structural Vector
                          Autoregressive Models
  bsynth                  Bayesian Synthetic Control
  btb                     Beyond the Border - Kernel Density Estimation
                          for Urban Geography
  btergm                  Temporal Exponential Random Graph Models by
                          Bootstrapped Pseudolikelihood
  btml                    Bayesian Treed Machine Learning for
                          Personalized Prediction
  btrm                    Bayesian Treed Regression Model for
                          Personalized Prediction and Precision
                          Diagnostics
  btw                     A Toolkit for Connecting R and Large Language
                          Models
  bubbleHeatmap           Produces 'bubbleHeatmap' Plots for Visualising
                          Metabolomics Data
  bubblyr                 Beautiful Bubbles for 'shiny' and 'rmarkdown'
                          Backgrounds
  budgetIVr               Partial Identification of Causal Effects with
                          Mostly Invalid Instruments
  buildmer                Stepwise Elimination and Term Reordering for
                          Mixed-Effects Regression
  buildr                  Organize & Run Build Scripts Comfortably
  bujar                   Buckley-James Regression for Survival Data with
                          High-Dimensional Covariates
  bulkQC                  Quality Control and Outlier Identification in
                          Bulk for Multicenter Trials
  bulkreadr               The Ultimate Tool for Reading Data in Bulk
  bulletcp                Automatic Groove Identification via Bayesian
                          Changepoint Detection
  bullishTrader           Bullish Trading Strategies Through Graphs
  bullseye                Visualising Multiple Pairwise Variable
                          Correlations and Other Scores
  bullwhipgame            Bullwhip Effect Demo in Shiny
  bumbl                   Tools for Modeling Bumblebee Colony Growth and
                          Decline
  bumblebee               Quantify Disease Transmission Within and
                          Between Population Groups
  bumphunter              Bump Hunter
  bunching                Estimate Bunching
  bunchr                  Analyze Bunching in a Kink or Notch Setting
  bunddev                 Discover and Call 'Bund.dev' APIs
  bundesbank              Download Data from Bundesbank
  bundesligR              All Final Tables of the Bundesliga
  bundle                  Serialize Model Objects with a Consistent
                          Interface
  bunsen                  Marginal Survival Estimation with Covariate
                          Adjustment
  buoyant                 Deploy '_server.yml' Compliant Applications to
                          'DigitalOcean'
  bupaR                   Business Process Analysis in R
  burgle                  'Burgle': Stealing the Necessary Parts of Model
                          Objects
  burnr                   Forest Fire History Analysis
  bursa                   R Wrapper for Bursa Municipality Open Data
                          Portal
  bursts                  Markov Model for Bursty Behavior in Streams
  busdater                Standard Date Calculations for Business
  bushtucker              'I'm a Celebrity Get Me Out of Here' Data
  businessPlanR           Simple Modelling Tools for Business Plans
  butcher                 Model Butcher
  butterfly               Verification for Continually Updating Time
                          Series Data
  butterflyOptions        Trading Butterfly Options Strategies
  buzzMed                 Bayesian Understanding for Mediator Selection
                          Framework
  bvarnet                 Bayesian Estimation of Dynamic VAR Models using
                          STAN
  bvars                   Bayesian Forecasting with Large Vector
                          Autoregressions
  bvarsv                  Bayesian Analysis of a Vector Autoregressive
                          Model with Stochastic Volatility and
                          Time-Varying Parameters
  bvartools               Bayesian Inference of Vector Autoregressive and
                          Error Correction Models
  bvhar                   Bayesian Vector Heterogeneous Autoregressive
                          Modeling
  bvls                    The Stark-Parker algorithm for bounded-variable
                          least squares
  bvpa                    Bivariate Pareto Distribution
  bwd                     Backward Procedure for Change-Point Detection
  bwimage                 Describe Image Patterns in Natural Structures
  bws                     Bayesian Weighted Sums
  bysykkel                Get City Bike Data from Norway
  bytescircle             Statistics About Bytes Contained in a File as a
                          Circle Plot
  bzinb                   Bivariate Zero-Inflated Negative Binomial Model
                          Estimator
  c060                    Extended Inference for Lasso and Elastic-Net
                          Regularized Cox and Generalized Linear Models
  c212                    Methods for Detecting Safety Signals in
                          Clinical Trials Using Body-Systems (System
                          Organ Classes)
  c2c                     Compare Two Classifications or Clustering
                          Solutions of Varying Structure
  c2z                     A Reference Manager
  c3                      'C3.js' Chart Library
  c3dr                    Read and Write C3D Motion Capture Files
  c3net                   Inferring Large-Scale Gene Networks with C3NET
  cABCanalysis            Computed ABC Analysis
  cAIC4                   Conditional Akaike Information Criterion for
                          'lme4' and 'nlme'
  cIRT                    Choice Item Response Theory
  cNORM                   Continuous Norming
  cOde                    Automated C Code Generation for 'deSolve',
                          'bvpSolve'
  cPseudoMaRg             Constructs a Correlated Pseudo-Marginal Sampler
  cSEM                    Composite-Based Structural Equation Modeling
  cTMed                   Continuous-Time Mediation
  cTOST                   Finite Sample Correction of the Two One-Sided
                          Tests in the Univariate Framework
  ca                      Simple, Multiple and Joint Correspondence
                          Analysis
  caROC                   Continuous Biomarker Evaluation with Adjustment
                          of Covariates
  caRamel                 Automatic Calibration by Evolutionary Multi
                          Objective Algorithm
  caRecall                Government of Canada Vehicle Recalls Database
                          API Wrapper
  caTools                 Tools: Moving Window Statistics, GIF, Base64,
                          ROC AUC, etc
  cabinets                Project Specific Workspace Organization
                          Templates
  cabootcrs               Bootstrap Confidence Regions for Simple and
                          Multiple Correspondence Analysis
  cacIRT                  Classification Accuracy and Consistency under
                          Item Response Theory
  cacc                    Conjunctive Analysis of Case Configurations
  cache                   Cache and Retrieve Computation Results
  cachem                  Cache R Objects with Automatic Pruning
  caesar                  Encrypts and Decrypts Strings
  caffsim                 Simulation of Plasma Caffeine Concentrations by
                          Using Population Pharmacokinetic Model
  calACS                  Calculations for All Common Subsequences
  calba                   Efficient Neighborhood Basal Area Metrics for
                          Trees
  calcUnique              Simple Wrapper for Computationally Expensive
                          Functions
  calcal                  Calendrical Calculations
  calcite                 Bindings to the Calcite Design System
                          'JavaScript' Component Library
  calculus                High Dimensional Numerical and Symbolic
                          Calculus
  calendR                 Ready to Print Monthly and Yearly Calendars
                          Made with 'ggplot2'
  calendRio               'calendR' Fork with Additional Features
                          (Backwards Compatible)
  calendar                Create, Read, Write, and Work with 'iCalendar'
                          Files, Calendars and Scheduling Data
  calibmsm                Calibration Plots for the Transition
                          Probabilities from Multistate Models
  calibrar                Automated Parameter Estimation for Complex
                          Models
  calibrate               Calibration of Scatterplot and Biplot Axes
  calibrateBinary         Calibration for Computer Experiments with
                          Binary Responses
  calibrationband         Calibration Bands
  calibrator              Bayesian Calibration of Complex Computer Codes
  calidad                 Assesses the Quality of Estimates Made by
                          Complex Sample Designs
  callback                Computes Statistics from Discrimination
                          Experimental Data
  callme                  Easily Compile and Call Inline 'C' Functions
  callr                   Call R from R
  callsync                Recording Synchronisation, Call Detection and
                          Assignment, Audio Analysis
  calmate                 Improved Allele-Specific Copy Number of SNP
                          Microarrays for Downstream Segmentation
  calmr                   Canonical Associative Learning Models and their
                          Representations
  calms                   Comprehensive Analysis of Latent Means
  calpassapi              R Interface to Access CalPASS API
  camcorder               Record Your Plot History
  camerondata             Datasets from "Microeconometrics: Methods and
                          Applications" by Cameron and Trivedi
  campaignmanageR         Connect to Campaign Manager via the
                          'Windsor.ai' API
  campfin                 Wrangle Campaign Finance Data
  campsis                 Generic PK/PD Simulation Platform Campsis
  campsismod              Generic Implementation of a PK/PD Model
  camsRad                 Client for CAMS Radiation Service
  camtrapR                Camera Trap Data Management and Analysis
                          Framework
  camtrapdp               Read and Manipulate Camera Trap Data Packages
  canadamaps              Maps of the Political and Administrative
                          Divisions of Canada
  canadianmaps            Effortlessly Create Stunning Canadian Maps
  canaper                 Categorical Analysis of Neo- And Paleo-Endemism
  cancensus               Access, Retrieve, and Work with Canadian Census
                          Data and Geography
  cancerGI                Analyses of Cancer Gene Interaction
  cancerR                 Classification of Cancer Using Administrative
                          Data
  cancerradarr            Cancer RADAR Project Tool
  candisc                 Visualizing Generalized Canonical Discriminant
                          and Canonical Correlation Analysis
  canprot                 Chemical Analysis of Proteins
  cansim                  Accessing Statistics Canada Data Table and
                          Vectors
  canvasXpress            Visualization Package for CanvasXpress in R
  canvasXpress.data       Datasets for the 'canvasXpress' Package
  caper                   Comparative Analyses of Phylogenetics and
                          Evolution in R
  capesData               Data on Scholarships in CAPES International
                          Mobility Programs
  capesR                  Access to CAPES Data
  capitalR                Capital Budgeting Analysis, Annuity Loan
                          Calculations and Amortization Schedules
  capl                    Compute and Visualize CAPL-2 Scores and
                          Interpretations
  caplot                  Correspondence Analysis with Geometric
                          Frequency Interpretation
  capr                    Covariate Assisted Principal Regression
  captain                 Running 'git' Pre-Commit Hooks
  capushe                 Capushe, Data-Driven Slope Estimation and
                          Dimension Jump
  capybara                Fast and Memory Efficient Fitting of Linear
                          Models with High-Dimensional Fixed Effects
  car                     Companion to Applied Regression
  carData                 Companion to Applied Regression Data Sets
  carSurv                 Correlation-Adjusted Regression Survival (CARS)
                          Scores
  caracas                 Computer Algebra
  caradpt                 Covariate-Adjusted Response-Adaptive Designs
                          for Clinical Trials
  carat                   Covariate-Adaptive Randomization for Clinical
                          Trials
  carbondata              Access Carbon Market Data from Emissions
                          Trading Systems and Voluntary Registries
  carbondate              Calibration and Summarisation of Radiocarbon
                          Dates
  carbonpredict           Predict Carbon Emissions for UK SMEs
  carbonr                 Calculate Carbon-Equivalent Emissions
  carcass                 Estimation of the Number of Fatalities from
                          Carcass Searches
  card                    Cardiovascular Applications in Research Data
  card.pro                Lightweight Modern & Responsive Card Component
                          for 'shiny'
  cardargus               Generate SVG Information Cards with Embedded
                          Fonts and Badges
  cardidates              Identification of Cardinal Dates in Ecological
                          Time Series
  cardinalR               Collection of Data Structures
  cards                   Analysis Results Data
  cardx                   Extra Analysis Results Data Utilities
  care                    High-Dimensional Regression and CAR Score
                          Variable Selection
  care4cmodel             Carbon-Related Assessment of Silvicultural
                          Concepts
  careless                Procedures for Computing Indices of Careless
                          Responding
  caresid                 Correspondence Analysis Plot and Associations
                          Visualisation
  caret                   Classification and Regression Training
  caretEnsemble           Ensembles of Caret Models
  caretForecast           Conformal Time Series Forecasting Using State
                          of Art Machine Learning Algorithms
  caretSDM                Build Species Distribution Modeling using
                          'caret'
  carfima                 Continuous-Time Fractionally Integrated ARMA
                          Process for Irregularly Spaced Long-Memory Time
                          Series Data
  cargo                   Develop R Packages using Rust
  caribou                 Estimation of Caribou Abundance Based on Radio
                          Telemetry Data
  caroline                A Collection of Database, Data Structure,
                          Visualization, and Utility Functions for R
  carpenter               Build Common Tables of Summary Statistics for
                          Reports
  carrier                 Isolate Functions for Remote Execution
  carsAlgo                Competitive Adaptive Reweighted Sampling (CARS)
                          Algorithm
  cartograflow            Filtering Matrix for Flow Mapping
  cartogram               Create Cartograms with R
  cartogramR              Continuous Cartogram
  cartographer            Turn Place Names into Map Data
  cartographr             Crafting Print-Ready Maps and Layered
                          Visualizations
  cartography             Thematic Cartography
  carts                   Simulation-Based Assessment of Covariate
                          Adjustment in Randomized Trials
  cascadeSelect           A Cascade Select Input for 'Shiny'
  cascadess               A Style Pronoun for 'htmltools' Tags
  cascsim                 Casualty Actuarial Society Individual Claim
                          Simulator
  caseMatch               Identify Similar Cases for Qualitative Case
                          Studies
  casebase                Fitting Flexible Smooth-in-Time Hazards and
                          Risk Functions via Logistic and Multinomial
                          Regression
  cases                   Stratified Evaluation of Subgroup
                          Classification Accuracy
  cash                    Discrete Choice and Competitive Reactions:
                          End-to-End Simulation
  casimir                 Comparing Automated Subject Indexing Methods in
                          R
  cassandRa               Finds Missing Links and Metric Confidence
                          Intervals in Ecological Bipartite Networks
  cassowaryr              Compute Scagnostics on Pairs of Numeric
                          Variables in a Data Set
  castgen                 Estimate Sample Size for Population Genomic
                          Studies
  castor                  Efficient Phylogenetics on Large Trees
  cat                     Analysis and Imputation of Categorical-Variable
                          Datasets with Missing Values
  cat2cat                 Handling an Inconsistently Coded Categorical
                          Variable in a Longitudinal Dataset
  catIrt                  Simulate IRT-Based Computerized Adaptive Tests
  catR                    Generation of IRT Response Patterns under
                          Computerized Adaptive Testing
  catSurv                 Computerized Adaptive Testing for Survey
                          Research
  cata                    Analysis of Check-All-that-Apply (CATA) Data
  catalog                 Access the 'Spark Catalog' API via 'sparklyr'
  catalytic               Tools for Applying Catalytic Priors in
                          Statistical Modeling
  catch                   Covariate-Adjusted Tensor Classification in
                          High-Dimensions
  catcont                 Test, Identify, Select and Mutate Categorical
                          or Continuous Values
  catdap                  Categorical Data Analysis Program Package
  catdata                 Categorical Data
  categoryEncodings       Category Variable Encodings
  catekappa               Design and Analysis of Consistency Tests Based
                          on Kappa Statistic
  catfun                  Categorical Data Analysis
  cati                    Community Assembly by Traits: Individuals and
                          Beyond
  catlearn                Formal Psychological Models of Categorization
                          and Learning
  catmaply                Heatmap for Categorical Data using 'plotly'
  catool                  Compensation Analysis Tool for Instructor
                          Overload Pay
  catregs                 Post-Estimation Functions for Generalized
                          Linear Mixed Models
  cats                    Cohort Platform Trial Simulation
  catseyes                Create Catseye Plots Illustrating the Normal
                          Distribution of the Means
  catsim                  Binary and Categorical Image Similarity Index
  catviz                  Visualizing Causal Assignment Trees for CSDiD
                          and DR-DDD Designs
  cauchypca               Robust Principal Component Analysis Using the
                          Cauchy Distribution
  caugi                   Causal Graph Interface
  cauphy                  Trait Evolution on Phylogenies Using the Cauchy
                          Process
  causact                 Fast, Easy, and Visual Bayesian Inference
  causal.decomp           Causal Decomposition Analysis
  causalBatch             Causal Batch Effects
  causalCmprsk            Nonparametric and Cox-Based Estimation of
                          Average Treatment Effects in Competing Risks
  causalDT                Causal Distillation Trees
  causalDisco             Tools for Causal Discovery on Observational
                          Data
  causalHyperGraph        Drawing Causal Hypergraphs
  causalOT                Optimal Transport Weights for Causal Inference
  causalPAF               Causal Effect for Population Attributable
                          Fractions (PAF)
  causalQual              Causal Inference for Qualitative Outcomes
  causalSLSE              Semiparametric Least Squares Inference for
                          Causal Effects
  causalWins              Compute the Causal Win Ratio Using Nearest
                          Neighbor Matching
  causaldata              Example Data Sets for Causal Inference
                          Textbooks
  causaldef               Decision-Theoretic Causal Diagnostics via Le
                          Cam Deficiency
  causaldrf               Estimating Causal Dose Response Functions
  causaleffect            Deriving Expressions of Joint Interventional
                          Distributions and Transport Formulas in Causal
                          Models
  causalfrag              Cross-Framework Causal Fragility Index
  causalnet               Directed Causal Network Enumeration and
                          Simulation
  causaloptim             An Interface to Specify Causal Graphs and
                          Compute Bounds on Causal Effects
  causalplot              Create Publication-Ready Causal Diagrams
  causalreg               Causal Generalized Linear Models
  causalsens              Selection Bias Approach to Sensitivity Analysis
                          for Causal Effects
  causalweight            Estimation Methods for Causal Inference Based
                          on Inverse Probability Weighting and Doubly
                          Robust Estimation
  causens                 Perform Causal Sensitivity Analyses Using
                          Various Statistical Methods
  caustests               Multiple Granger Causality Tests for Time
                          Series and Panel Data
  caviarpd                Cluster Analysis via Random Partition
                          Distributions
  cayleyR                 Cayley Graph Analysis for Permutation Puzzles
  cba                     Clustering for Business Analytics
  cbanalysis              Coffee Break Descriptive Analysis
  cbass                   Classification -- Bayesian Adaptive Smoothing
                          Splines
  cbbinom                 Continuous Analog of a Beta-Binomial
                          Distribution
  cbcTools                Design and Analyze Choice-Based Conjoint
                          Experiments
  cbinom                  Continuous Analog of a Binomial Distribution
  cbioportalR             Browse and Query Clinical and Genomic Data from
                          cBioPortal
  cbl                     Causal Discovery under a Confounder Blanket
  cbsREPS                 Hedonic and Multilateral Index Methods for Real
                          Estate Price Statistics
  cbsodataR               Statistics Netherlands (CBS) Open Data API
                          Client
  ccLRforR                Case-Control Likelihood Ratio (ccLR)
  ccRemover               Removes the Cell-Cycle Effect from Single-Cell
                          RNA-Sequencing Data
  ccTensor                CUR/CX Tensor Decomposition
  ccaPP                   (Robust) Canonical Correlation Analysis via
                          Projection Pursuit
  ccar3                   Canonical Correlation Analysis via Reduced Rank
                          Regression
  cccd                    Class Cover Catch Digraphs
  cccm                    Crossed Classification Credibility Model
  cccp                    Cone Constrained Convex Problems
  cccrm                   Concordance Correlation Coefficient for
                          Repeated (and Non-Repeated) Measures
  ccdR                    Utilities for Interacting with the 'CTX' APIs
  cchs                    Cox Model for Case-Cohort Data with Stratified
                          Subcohort-Selection
  cchsflow                Transforming and Harmonizing CCHS Variables
  ccid                    Cross-Covariance Isolate Detect: a New
                          Change-Point Method for Estimating Dynamic
                          Functional Connectivity
  cclust                  Convex Clustering Methods and Clustering
                          Indexes
  cclustr                 Consensus Clustering Methods for Multiple
                          Imputed Data
  ccmEstimator            Comparative Causal Mediation Estimation
  ccmReportR              Wraps 'CCM' with Utility Functions
  ccoptimalmatch          Implementation of Case-Control Optimal Matching
  ccostr                  Estimation of Mean Costs in Censored Data
  ccpsyc                  Methods for Cross-Cultural Psychology
  ccrtm                   Coupled Chain Radiative Transfer Models
  ccss                    Cluster Circular Systematic Sampling
  cctest                  Canonical Correlations and Tests of
                          Independence
  cctools                 Tools for the Continuous Convolution Trick in
                          Nonparametric Estimation
  cd                      CD Data for Entity Resolution
  cdCAT                   Computerized Adaptive Testing with Cognitive
                          Diagnostic Models
  cdata                   Fluid Data Transformations
  cdcanthro               Sex- and Age-Standardized Metrics from the
                          Centers for Disease Control and Prevention
                          (CDC) Growth Charts
  cdcatR                  Cognitive Diagnostic Computerized Adaptive
                          Testing
  cdcsis                  Conditional Distance Correlation Based Feature
                          Screening and Conditional Independence
                          Inference
  cder                    Interface to the California Data Exchange
                          Center (CDEC)
  cdfinv                  Confidence Interval Estimation via CDF
                          Inversion
  cdfquantreg             Quantile Regression for Random Variables on the
                          Unit Interval
  cdgd                    Causal Decomposition of Group Disparities
  cdiWG2WS                Words and Gestures to Words and Sentences Score
                          Conversion
  cdid                    The Chained Difference-in-Differences
  cdlTools                Tools to Download and Work with USDA Cropscape
                          Data
  cdlei                   Cause-Deleted Life Expectancy Improvement
                          Procedure
  cdlsim                  Simulation of Cropland Data Layer Products from
                          the USDA
  cdmTools                Useful Tools for Cognitive Diagnosis Modeling
  cdnbcr                  Correlated Destructive Negative Binomial Cure
                          Rate Model
  cdom                    R Functions to Model CDOM Spectra
  cdparcoord              Top Frequency-Based Parallel Coordinates
  cdrcR                   Load 'CDRC' Data
  ceRtainty               Certainty Equivalent
  ceas                    Cellular Energetics Analysis Software
  ceblR                   Extract Data from the Canadian Elite Basketball
                          League
  celestial               Collection of Common Astronomical Conversion
                          Routines and Functions
  cellGeometry            Geometric Single Cell Deconvolution
  cellKey                 Consistent Perturbation of Statistical
                          Frequency- And Magnitude Tables
  cellOrigins             Finds RNASeq Source Tissues Using In Situ
                          Hybridisation Data
  cellVolumeDist          Functions to Fit Cell Volume Distributions and
                          Thereby Estimate Cell Growth Rates and Division
                          Times
  cellWise                Analyzing Data with Cellwise Outliers
  cellkeyperturbation     Cell Key Perturbation
  cellranger              Translate Spreadsheet Cell Ranges to Rows and
                          Columns
  celltrackR              Motion Trajectory Analysis
  cem                     Coarsened Exact Matching
  cemco                   Fit 'CemCO' Algorithm
  cenGAM                  Censored Regression with Smooth Terms
  cenROC                  Estimating Time-Dependent ROC Curve and AUC for
                          Censored Data
  cencrne                 Consistent Estimation of the Number of
                          Communities via Regularized Network Embedding
  censReg                 Censored Regression (Tobit) Models
  censable                Making Census Data More Usable
  censo2022arg            Extraction and Analysis of 2022 Argentina
                          Census Microdata from REDATAM Databases
  censobr                 Download Data from Brazil's Population Census
  censorcopula            Estimate Parameter of Bivariate Copula
  censored                'parsnip' Engines for Survival Models
  censoredAIDS            Estimation of Censored AI/QUAI Demand System
                          via Maximum Likelihood Estimation (MLE)
  censusapi               Retrieve Data from the Census APIs
  censuspyrID             Explorer of Indonesian Population Pyramids from
                          Harmonized and Non-Harmonized Census Data
  centerline              Extract Centerline from Closed Polygons
  centiserve              Find Graph Centrality Indices
  centr                   Weighted and Unweighted Spatial Centers
  centrifugeR             Non-Trivial Balance of Centrifuge Rotors
  cepR                    Busca CEPs Brasileiros
  cepiigeodist            CEPII's GeoDist Datasets
  cepiweek                Continuous Epidemiological Week Indexing for
                          Time-Series Analysis
  cepp                    Context Driven Exploratory Projection Pursuit
  cepreader               Read 'CEP' and Legacy 'CANOCO' Files
  cepumd                  Calculate Consumer Expenditure Survey (CE)
                          Annual Estimates
  cequre                  Censored Quantile Regression &
                          Monotonicity-Respecting Restoring
  cer                     Download and Tidy Australian Clean Energy
                          Regulator Data
  ceramic                 Download Online Imagery Tiles
  cercospoRa              Process Based Epidemiological Model for
                          Cercospora Leaf Spot of Sugar Beet
  cereal                  Serialize 'vctrs' Objects to 'JSON'
  certify                 Generate Branded PDF Certificates
  ces                     Access to Canadian Election Study Data
  ceser                   Cluster Estimated Standard Errors
  cetcolor                CET Perceptually Uniform Colour Maps
  ceterisParibus          Ceteris Paribus Profiles
  cfa                     Configural Frequency Analysis (CFA)
  cfbfastR                Access College Football Play by Play Data
  cfda                    Categorical Functional Data Analysis
  cfdecomp                Counterfactual Decomposition: MC Integration of
                          the G-Formula
  cffdrs                  Canadian Forest Fire Danger Rating System
  cffr                    Generate Citation File Format ('CFF') Metadata
                          for R Packages
  cfid                    Identification of Counterfactual Queries in
                          Causal Models
  cfmortality             Cystic Fibrosis Survival Prediction Model Based
                          on Stanojevic Model
  cforecast               Conditional Forecasting and Scenario Analysis
                          Using VAR Models
  cforward                Forward Selection using Concordance/C-Index
  cfr                     Estimate Disease Severity and Case
                          Ascertainment
  cft                     Climate Futures Toolbox
  cg                      Compare Groups, Analytically and Graphically
  cgAUC                   Calculate AUC-type measure when gold standard
                          is continuous and the corresponding optimal
                          linear combination of variables with respect to
                          it.
  cgaim                   Constrained Groupwise Additive Index Models
  cgal4h                  'CGAL' Version 4 C++ Header Files
  cgam                    Constrained Generalized Additive Model
  cglasso                 Conditional Graphical LASSO for Gaussian
                          Graphical Models with Censored and Missing
                          Values
  cgmanalysis             Clean and Analyze Continuous Glucose Monitor
                          Data
  cgmguru                 Advanced Continuous Glucose Monitoring Analysis
                          with High-Performance C++ Backend
  cgmquantify             Analyzing Glucose and Glucose Variability
  cgvR                    Interactive 3D Visualization of Large Cayley
                          Graphs via Vulkan
  cgwtools                Miscellaneous Tools
  chainbinomial           Chain Binomial Models for Analysis of
                          Infectious Disease Data
  chameleon               Automatic Colors for Multi-Dimensional Data
  chandwich               Chandler-Bate Sandwich Loglikelihood Adjustment
  changeS                 S-Curve Fit for Changepoint Analysis
  changepoint             Methods for Changepoint Detection
  changepoint.geo         Geometrically Inspired Multivariate Changepoint
                          Detection
  changepoint.influence   Package to Calculate the Influence of the Data
                          on a Changepoint Segmentation
  changepoint.np          Methods for Nonparametric Changepoint Detection
  changepointGA           Changepoint Detection via Modified Genetic
                          Algorithms
  changepointTests        Change Point Tests for Joint Distributions and
                          Copulas
  changepoints            A Collection of Change-Point Detection Methods
  changepointsVar         Change-Points Detections for Changes in
                          Variance
  changer                 Change R Package Name
  chantrics               Loglikelihood Adjustments for Econometric
                          Models
  chapensk                Estimation of Gas Properties from the
                          Lennard-Jones Potential
  charcuterie             Handle Strings as Vectors of Characters
  charisma                Reproducible Color Characterization of Digital
                          Images for Biological Studies
  charlatan               Make Fake Data
  charlesschwabapi        Wrapper Functions Around 'Charles Schwab
                          Individual Trader API'
  chartql                 Simplified Language for Plots and Charts
  chartreview             Adaptive Multi-Wave Sampling for Efficient
                          Chart Validation
  chatAI4R                Chat-Based Interactive Artificial Intelligence
                          for R
  chatLLM                 A Flexible Interface for 'LLM' API Interactions
  chatRater               A Tool for Rating Text/Image/Audio Stimuli via
                          'LLMs'
  chatgpt                 Interface to 'ChatGPT' from R
  chattr                  Interact with Large Language Models in
                          'RStudio'
  chcd                    Access Canadian Historical Climate Data
  cheapr                  Simple Functions to Save Time and Memory
  cheatsheet              Download R Cheat Sheets Locally
  checkCLI                'CLI' Messages for Checkmate Assertions and
                          Checks
  checkLuhn               Checks if a Number is Valid Using the Luhn
                          Algorithm
  checkarg                Check the Basic Validity of a (Function)
                          Argument
  checkdown               Check-Fields and Check-Boxes for 'rmarkdown'
  checked                 Systematically Run R CMD Checks
  checker                 Checks 'R' Configuration Set Up Correctly
                          Before Class
  checkglobals            Static Analysis of R-Code Dependencies
  checkhelper             Deal with Check Outputs
  checkmate               Fast and Versatile Argument Checks
  checkstring             Common String Format Validation
  checkthat               Intuitive Unit Testing Tools for Data
                          Manipulation
  cheddar                 Analysis and Visualisation of Ecological
                          Communities
  cheem                   Interactively Explore Local Explanations with
                          the Radial Tour
  cheese                  Tools for Working with Data During Statistical
                          Analysis
  cheetahR                High Performance Tables Using 'Cheetah Grid'
  chem.databases          Collection of 3 Chemical Databases from Public
                          Sources
  chem16S                 Chemical Metrics for Microbial Communities
  chemCal                 Calibration Functions for Analytical Chemistry
  chemdeg                 Analysis of Chemical Degradation Kinetic Data
  chemodiv                Analysing Chemodiversity of Phytochemical Data
  chemometrics            Multivariate Statistical Analysis in
                          Chemometrics
  cherry                  Multiple Testing Methods for Exploratory
                          Research
  cherryblossom           Cherry Blossom Run Race Results
  chess                   Read, Write, Create and Explore Chess Games
  chess2plyrs             Chess Game Creation and Tools
  chessboard              Create Network Connections Based on Chess Moves
  chest                   Change-in-Estimate Approach to Assess
                          Confounding Effects
  chevron                 Standard TLGs for Clinical Trials Reporting
  chi                     The Chi Distribution
  chiOpenData             Convenient Access to Chicago Open Data API
                          Endpoints
  chicane                 Capture Hi-C Analysis Engine
  childdevdata            Child Development Data
  childesr                Accessing the 'CHILDES' Database
  childeswordfreq         Word and Phrase Frequency Tools for CHILDES
  childfree               Access and Harmonize Childfree Demographic Data
  childpen                Identification and Estimation of Child
                          Penalties
  childsds                Data and Methods Around Reference Values in
                          Pediatrics
  chillR                  Statistical Methods for Phenology Analysis in
                          Temperate Fruit Trees
  chipPCR                 Toolkit of Helper Functions to Pre-Process
                          Amplification Data
  chirps                  API Client for CHIRPS and CHIRTS
  chisquare               Chi-Square and G-Square Test of Independence,
                          Power and Residual Analysis, Measures of
                          Categorical Association
  chk                     Check User-Supplied Function Arguments
  chlorpromazineR         Convert Antipsychotic Doses to Chlorpromazine
                          Equivalents
  chmsflow                Transforming and Harmonizing CHMS Variables
  chngpt                  Estimation and Hypothesis Testing for Threshold
                          Regression
  choiceDes               Design Functions for Choice Studies
  choicedata              Working with Choice Data
  choicer                 Discrete Choice Models for Economic
                          Applications
  cholera                 Amend, Augment and Aid Analysis of John Snow's
                          Cholera Map
  chomper                 A Comprehensive Hit or Miss Probabilistic
                          Entity Resolution Model
  chooseGCM               Selecting General Circulation Models for
                          Species Distribution Modeling
  choosepc                Choose the Number of Principal Components via
                          Recistruction Error
  chopin                  Spatial Parallel Computing by Hierarchical Data
                          Partitioning
  choplump                Permutation Test for Some Positive and Many
                          Zero Responses
  chopper                 Changepoint-Aware Ensemble for Probabilistic
                          Modeling
  chopthin                The Chopthin Resampler
  chords                  Estimation in Respondent Driven Samples
  chores                  A Collection of Large Language Model Assistants
  choroplethrAdmin1       Contains an Administrative-Level-1 Map of the
                          World
  choroplethrMaps         Contains Maps Used by the 'choroplethr' Package
  chouca                  A Stochastic Cellular Automaton Engine
  christmas               Generation of Different Animated Christmas
                          Cards
  chromConverter          Chromatographic File Converter
  chromer                 Interface to Chromosome Counts Database API
  chromoMap               Interactive Genomic Visualization of Biological
                          Data
  chromote                Headless Chrome Web Browser Interface
  chromseq                Split Chromosome 'Fasta' File
  chron                   Chronological Objects which Can Handle Dates
                          and Times
  chronicle               Grammar for Creating R Markdown Reports
  chronicler              Add Logging to Functions
  chronochrt              Creating Chronological Charts
  chronometre             A 'chronomètre' is a 'stopwatch'
  chronosphere            Evolving Earth System Variables
  chunked                 Chunkwise Text-File Processing for 'dplyr'
  chunkhooks              Chunk Hooks for 'R Markdown'
  chyper                  Functions for Conditional Hypergeometric
                          Distributions
  ci                      Confidence Intervals for Education
  ciCalibrate             Calibration of Confidence Intervals to Support
                          Intervals
  ciTools                 Confidence or Prediction Intervals, Quantiles,
                          and Probabilities for Statistical Models
  cia                     Learn and Apply Directed Acyclic Graphs for
                          Causal Inference
  cicalc                  Calculate Confidence Intervals
  cicero                  Predict cis-co-accessibility from single-cell
                          chromatin accessibility data
  cicerone                Provide Tours of 'Shiny' Applications
  ciecl                   International Classification of Diseases
                          'ICD-10'/'ICD-11' for Chile
  cif                     Cointegrated ICU Forecasting
  ciflyr                  Reachability-Based Primitives for Graphical
                          Causal Inference
  cifmodeling             Visualization and Polytomous Modeling of
                          Survival and Competing Risks
  cifti                   Toolbox for Connectivity Informatics Technology
                          Initiative ('CIFTI') Files
  ciftiTools              Tools for Reading, Writing, Viewing and
                          Manipulating CIFTI Files
  cigarillo               Efficient manipulation of CIGAR strings
  cimir                   Interface to the CIMIS Web API
  cinaR                   A Computational Pipeline for Bulk 'ATAC-Seq'
                          Profiles
  cinaRgenesets           Ready-to-Use Curated Gene Sets for 'cinaR'
  cinterpolate            Interpolation From C
  cipheR                  Encryption and Decryption with Text Ciphers
  ciphertext              Classical Cryptography Methods for Words and
                          Phrases
  cir                     Centered Isotonic Regression and Dose-Response
                          Utilities
  circacompare            Analyses of Circadian Data
  circhelp                Circular Analyses Helper Functions
  circle                  R Client Package for Circle CI
  circles                 A Small Package for Drawing Various
                          Combinations of Circles
  circlesplot             Visualize Proportions with Circles in a Plot
  circletyper             Curve Text Elements in 'Shiny' Using
                          'CircleType.js'
  circlize                Circular Visualization
  circlizePlus            Using 'ggplot2' Feature to Write Readable R
                          Code for Circular Visualization
  circlus                 Clustering and Simulation of Spherical Cauchy
                          and PKBD Models
  circuitscaper           'Circuitscape' and 'Omniscape' Connectivity
                          Analysis via 'Julia'
  circular                Circular Statistics
  circularEV              Extreme Value Analysis for Circular Data
  circularKDE             Recent Methods for Kernel Density Estimation of
                          Circular Data
  circumplex              Analysis and Visualization of Circular Data
  cirls                   Constrained Iteratively Reweighted Least
                          Squares
  cisp                    A Correlation Indicator Based on Spatial
                          Patterns
  cit                     Causal Inference Test
  citation                Software Citation Tools
  citationchaser          Perform Forward and Backwards Chasing in
                          Evidence Syntheses
  citecorp                Client for the Open Citations Corpus
  citestR                 Conditional Independence of Missingness Test
  cities                  Clinical Trials with Intercurrent Events
                          Simulator
  cito                    Building and Training Neural Networks
  citrus                  Customer Intelligence Tool for Rapid
                          Understandable Segmentation
  citsr                   Controlled Interrupted Time Series Analysis and
                          Visualization
  ciu                     Contextual Importance and Utility
  ciuupi                  Confidence Intervals Utilizing Uncertain Prior
                          Information
  ciuupi2                 Kabaila and Giri (2009) Confidence Interval
  civ                     Categorical Instrumental Variables
  civic.icarm             Interpretable Civic-Accountable and Responsible
                          Machine Learning
  civis                   R Client for the 'Civis Platform API'
  ciw                     Watch the CRAN Incoming Directories
  cjar                    R Client for 'Customer Journey Analytics'
                          ('CJA') API
  cjbart                  Heterogeneous Effects Analysis of Conjoint
                          Experiments
  cjoint                  AMCE Estimator for Conjoint Experiments
  ckanr                   Client for the Comprehensive Knowledge Archive
                          Network ('CKAN') API
  clValid                 Validation of Clustering Results
  cladoRcpp               C++ Implementations of Phylogenetic
                          Cladogenesis Calculations
  clam                    Classical Age-Depth Modelling of Cores from
                          Deposits
  clampSeg                Idealisation of Patch Clamp Recordings
  clap                    Detecting Class Overlapping Regions in
                          Multidimensional Data
  clarabel                Interior Point Conic Optimization Solver
  clarifai                Access to Clarifai API
  clarify                 Simulation-Based Inference for Regression
                          Models
  clarkeTest              Distribution-Free Tests of Non-Nested Models
  classGraph              Construct Graphs of S4 Class Hierarchies
  classInt                Choose Univariate Class Intervals
  classicaltest           Classical Test Theory (CTT) Analysis
  classifierplots         Generates a Visualization of Classifier
                          Performance as a Grid of Diagnostic Plots
  classifly               Explore Classification Models in High
                          Dimensions
  classmap                Visualizing Classification Results
  clayringsmiletus        Clay Stacking Rings Found in Miletus (Data)
  clc                     CORINE Land Cover Data and Styles
  cld                     Create Compact Letter Display (CLD) for
                          Statistical Comparisons
  cld2                    Google's Compact Language Detector 2
  cld3                    Google's Compact Language Detector 3
  clda                    Convolution-Based Linear Discriminant Analysis
  cleaR                   Clean the R Console and Environment
  clean                   Fast and Easy Data Cleaning
  cleanNLP                A Tidy Data Model for Natural Language
                          Processing
  cleanTS                 Testbench for Univariate Time Series Cleaning
  cleancall               C Resource Cleanup via Exit Handlers
  cleandata               To Inspect and Manipulate Data; and to Keep
                          Track of This Process
  cleanepi                Clean and Standardize Epidemiological Data
  cleaner                 Fast and Easy Data Cleaning
  cleangeo                Cleaning Geometries from Spatial Objects
  cleanr                  Helps You to Code Cleaner
  cleanrmd                Clean Class-Less 'R Markdown' HTML Documents
  clevr                   Clustering and Link Prediction Evaluation in R
  clhs                    Conditioned Latin Hypercube Sampling
  cli                     Helpers for Developing Command Line Interfaces
  cliapp                  Create Rich Command Line Applications
  clickR                  Semi-Automatic Preprocessing of Messy Data with
                          Change Tracking for Dataset Cleaning
  clickableImageMap       Implement 'tableGrob' Object as a Clickable
                          Image Map
  clickb                  Web Data Analysis by Bayesian Mixture of Markov
                          Models
  clickstream             Analyzes Clickstreams Based on Markov Chains
  clidamonger             Monthly Climate Data for Germany, Usable for
                          Heating and Cooling Calculations
  clidatajp               Data from Japan Meteorological Agency
  cliff                   Execute Command Line Programs Interactively
  clifford                Arbitrary Dimensional Clifford Algebras
  climaemet               Tools for AEMET Climate Data
  climate                 Interface to Download Meteorological (and
                          Hydrological) Datasets
  climateStability        Estimating Climate Stability from Climate Model
                          Data
  climatehealth           Statistical Tools for Modelling Climate-Health
                          Impacts
  climatekit              Unified Climate Indices for Temperature,
                          Precipitation, and Drought
  climatol                Climate Tools (Series Homogenization and
                          Derived Products)
  climatrends             Climate Variability Indices for Ecological
                          Modelling
  clime                   Constrained L1-Minimization for Inverse
                          (Covariance) Matrix Estimation
  climenu                 Interactive Command-Line Menus
  climetrics              Climate Change Metrics
  climextRemes            Tools for Analyzing Climate Extremes
  climniche               Niche Climate Exposure
  climodr                 Climate Modeling with Point Data from Climate
                          Stations
  climwin                 Climate Window Analysis
  clinCompare             Dataset Comparison with 'CDISC' Validation for
                          Clinical Trial Data
  clinDR                  Simulation and Analysis Tools for Clinical Dose
                          Response Modeling
  clinDataReview          Clinical Data Review Tool
  clinPK                  Clinical Pharmacokinetics Toolkit
  clinTrialData           Clinical Trial Example Datasets
  clinUtils               General Utility Functions for Analysis of
                          Clinical Data
  clinfun                 Clinical Trial Design and Data Analysis
                          Functions
  clinical                Analysis of Clinical Data
  clinicalfair            Algorithmic Fairness Assessment for Clinical
                          Prediction Models
  clinicalomicsdbR        Interface with the 'ClinicalOmicsDB' API,
                          Allowing for Easy Data Downloading and
                          Importing
  clinicalsignificance    A Toolbox for Clinical Significance Analyses in
                          Intervention Studies
  clinify                 Clinical Table Styling Tools and Utilities
  clinmon                 Hemodynamic Calculations from Clinical
                          Monitoring
  clinpubr                Clinical Publication
  clinsig                 Clinical Significance Functions
  clinspacy               Clinical Natural Language Processing using
                          'spaCy', 'scispaCy', and 'medspaCy'
  clintools               Tools for Clinical Research
  clintrialx              Connect and Work with Clinical Trials Data
                          Sources
  cliot                   Clinical Indices and Outcomes Tools
  clipp                   Calculating Likelihoods by Pedigree Paring
  clipr                   Read and Write from the System Clipboard
  clisymbols              Unicode Symbols at the R Prompt
  clitable                Render Tables in Text for the Terminal
  clmplus                 Tool-Box of Chain Ladder Plus Models
  clmstan                 Cumulative Link Models with 'CmdStanR'
  clock                   Date-Time Types and Tools
  clockify                A Wrapper for the 'Clockify' API
  clockplot               Plot Event Times on a 24-Hour Clock
  clogitL1                Fitting Exact Conditional Logistic Regression
                          with Lasso and Elastic Net Penalties
  clogitboost             Boosting Conditional Logit Model
  cloneRate               Estimate Growth Rates from Phylogenetic Trees
  clootl                  Fetch and Explore the Cornell Lab of
                          Ornithology Open Tree of Life Avian Phylogeny
  clordr                  Composite Likelihood Inference and Diagnostics
                          for Replicated Spatial Ordinal Data
  closeloop               Integrate Single-Arm Observational Data in
                          Network Meta Analysis
  cloudUtil               Cloud Utilization Plots
  cloudfs                 Streamlined Interface to Interact with Cloud
                          Storage Platforms
  cloudml                 Interface to the Google Cloud Machine Learning
                          Platform
  cloudosR                'Lifebit' Platform 'API' Client
  cloudstoR               Simplifies Access to Cloudstor API
  clptheory               Compute Price of Production and Labor Values
  clr                     Curve Linear Regression via Dimension Reduction
  clttools                Central Limit Theorem Experiments (Theoretical
                          and Simulation)
  clubSandwich            Cluster-Robust (Sandwich) Variance Estimators
                          with Small-Sample Corrections
  clubpro                 Classification Using Binary Procrustes Rotation
  clue                    Cluster Ensembles
  clugenr                 Multidimensional Cluster Generation Using
                          Support Lines
  clusEvol                A Procedure for Cluster Evolution Analytics
  clusTransition          Monitor Changes in Cluster Solutions of Dynamic
                          Datasets
  clusrank                Wilcoxon Rank Tests for Clustered Data
  clust.bin.pair          Statistical Methods for Analyzing Clustered
                          Matched Pair Data
  clustAnalytics          Cluster Evaluation on Graphs
  clustEff                Clusters of Effects Curves in Quantile
                          Regression Models
  clustMD                 Model Based Clustering for Mixed Data
  clustMixType            k-Prototypes Clustering for Mixed Variable-Type
                          Data
  clustNet                Network-Based Clustering
  clustTMB                Spatio-Temporal Finite Mixture Model using
                          'TMB'
  clustcurv               Determining Groups in Multiples Curves
  cluster.datasets        Cluster Analysis Data Sets
  clusterCrit             Clustering Indices
  clusterGGM              Sparse Gaussian Graphical Modeling with
                          Variable Clustering
  clusterGeneration       Random Cluster Generation (with Specified
                          Degree of Separation)
  clusterMI               Cluster Analysis with Missing Values by
                          Multiple Imputation
  clusterProfiler         A Universal Enrichment Tool for Interpreting
                          Omics Data
  clusterRepro            Reproducibility of Gene Expression Clusters
  clusterSEs              Calculate Cluster-Robust p-Values and
                          Confidence Intervals
  clusterSim              Searching for Optimal Clustering Procedure for
                          a Data Set
  clusterWebApp           Universal Clustering Analysis Platform
  clusterability          Performs Tests for Cluster Tendency of a Data
                          Set
  clusteredMSM            Nonparametric Analysis of Clustered Multistate
                          Processes
  clusterindices          Cluster Validity Indices
  clustering.sc.dp        Optimal Distance-Based Clustering for
                          Multidimensional Data with Sequential
                          Constraint
  clustermole             Unbiased Single-Cell Transcriptomic Data Cell
                          Type Identification
  clustermq               Evaluate Function Calls on HPC Schedulers
                          (SLURM, LSF, SGE, GCS, OCS, PBS, Torque)
  clusternomics           Integrative Clustering for Heterogeneous
                          Biomedical Datasets
  clustertend             Check the Clustering Tendency
  clusterv                Assessment of Cluster Stability by Randomized
                          Maps
  clustlearn              Learn Clustering Techniques Through Examples
                          and Code
  clustord                Cluster Ordinal Data via Proportional Odds or
                          Ordered Stereotype
  clustra                 Clustering Longitudinal Trajectories
  clustrd                 Methods for Joint Dimension Reduction and
                          Clustering
  clustree                Visualise Clusterings at Different Resolutions
  clustringr              Cluster Strings by Edit-Distance
  clustur                 Clustering
  clustvarsel             Variable Selection for Gaussian Model-Based
                          Clustering
  cmAnalysis              Process and Visualise Concept Mapping Data
  cmR                     Analysis of Cardiac Magnetic Resonance Images
  cmaRs                   Implementation of the Conic Multivariate
                          Adaptive Regression Splines in R
  cmaes                   Covariance Matrix Adapting Evolutionary
                          Strategy
  cmaesr                  Covariance Matrix Adaptation Evolution Strategy
  cmahalanobis            Calculate Distance Measures for DataFrames
  cmbClust                Conditional Mixture Modeling and Model-Based
                          Clustering
  cmdfun                  Framework for Building Interfaces to Shell
                          Commands
  cmfrec                  Collective Matrix Factorization for Recommender
                          Systems
  cmgnd                   Constrained Mixture of Generalized Normal
                          Distributions
  cmhc                    Access, Retrieve, and Work with CMHC Data
  cml                     Conditional Manifold Learning
  cmm                     Categorical Marginal Models
  cmmr                    CEU Mass Mediator RESTful API
  cmna                    Computational Methods for Numerical Analysis
  cmocean                 Beautiful Colour Maps for Oceanography
  cmpp                    Direct Parametric Inference for the Cumulative
                          Incidence Function in Competing Risks
  cmprsk                  Subdistribution Analysis of Competing Risks
  cmprskQR                Analysis of Competing Risks Using Quantile
                          Regressions
  cmprskcoxmsm            Use IPW to Estimate Treatment Effect under
                          Competing Risks
  cmpsR                   R Implementation of Congruent Matching Profile
                          Segments Method
  cms                     Calculate Medicare Reimbursement
  cmsaf                   A Toolbox for CM SAF NetCDF Data
  cmsafops                Tools for CM SAF NetCDF Data
  cmsafvis                Tools to Visualize CM SAF NetCDF Data
  cmstatr                 Statistical Methods for Composite Material Data
  cmstatrExt              More Statistical Methods for Composite Material
                          Data
  cmtest                  Conditional Moments Test
  cmtkr                   Wrapper for the Computational Morphometry
                          Toolkit ('CMTK') Library
  cmvnorm                 The Complex Multivariate Gaussian Distribution
  cna                     Causal Modeling with Coincidence Analysis
  cnaOpt                  Optimizing Consistency and Coverage in
                          Configurational Causal Modeling
  cnbdistr                Conditional Negative Binomial Distribution
  cncaGUI                 Canonical Non-Symmetrical Correspondence
                          Analysis in R
  cnd                     Create and Register Conditions
  cnefetools              Access and Analysis of Brazilian CNEFE Address
                          Data
  cnmap                   China Map Data from AutoNavi Map
  cnum                    Chinese Numerals Processing
  coFAST                  Spatially-Aware Cell Clustering Algorithm with
                          Cluster Significant Assessment
  coRanking               Co-Ranking Matrix
  coRdon                  Codon Usage Analysis and Prediction of Gene
                          Expressivity
  coala                   A Framework for Coalescent Simulation
  coalescentMCMC          MCMC Algorithms for the Coalescent
  coalitions              Bayesian "Now-Cast" Estimation of Event
                          Probabilities in Multi-Party Democracies
  coarseDataTools         Analysis of Coarsely Observed Data
  coat                    Conditional Method Agreement Trees (COAT)
  cobalt                  Covariate Balance Tables and Plots
  cobenrich               Using Multiple Continuous Biomarkers for
                          Patient Enrichment in Two-Stage Clinical
                          Designs
  cobiclust               Biclustering via Latent Block Model Adapted to
                          Overdispersed Count Data
  cobin                   Cobin and Micobin Regression Models for
                          Continuous Proportional Data
  cobs                    Constrained B-Splines (Sparse Matrix Based)
  cocktailApp             'shiny' App to Discover Cocktails
  coconots                Convolution-Closed Models for Count Time Series
  cocons                  Covariate-Based Covariance Functions for
                          Nonstationary Spatial Modeling
  cocoon                  Extract, Format, and Print Statistical Output
  cocor                   Comparing Correlations
  cocorresp               Co-Correspondence Analysis Methods
  cocosoR                 CoCoSo - Combined Compromise Solution Method
                          for MCDA
  cocotest                Dependence Condition Test Using Ranked
                          Correlation Coefficients
  cocron                  Statistical Comparisons of Two or more Alpha
                          Coefficients
  coda                    Output Analysis and Diagnostics for MCMC
  coda.base               A Basic Set of Functions for Compositional Data
                          Analysis
  coda.pack               Meta-Package for Compositional Data Analysis
  coda.plot               Plots for Compositional Data
  coda4microbiome         Compositional Data Analysis for Microbiome
                          Studies
  codacore                Learning Sparse Log-Ratios for Compositional
                          Data
  codalm                  Transformation-Free Linear Regression for
                          Compositional Outcomes and Predictors
  codaredistlm            Compositional Data Linear Models with
                          Composition Redistribution
  codeCollection          Collection of Codes with Labels
  codebook                Automatic Codebooks from Metadata Encoded in
                          Dataset Attributes
  codebookr               Create Codebooks from Data Frames
  codebreaker             Retro Logic Game
  codecountR              Counting Codes in a Text and Preparing Data for
                          Analysis
  codelist                Working with Code Lists
  codemeta                A Smaller 'codemetar' Package
  codemetar               Generate 'CodeMeta' Metadata for R Packages
  codename                Generation of Code Names for Organizations,
                          People, Projects, and Whatever Else
  codep                   Multiscale Codependence Analysis
  coder                   Deterministic Categorization of Items Based on
                          External Code Data
  codestral               Chat and FIM with 'Codestral'
  codewhere               Find the Location of an R Package's Code
  codexcopd               The CODEX (Comorbidity, Obstruction, Dyspnea,
                          and Previous Severe Exacerbations) Index: Short
                          and Medium-Term Prognosis in Patients
                          Hospitalized for Chronic Obstructive Pulmonary
                          Disease (COPD) Exacerbations
  codez                   Seq2Seq Encoder-Decoder Model for Time-Feature
                          Analysis Based on Tensorflow
  codified                Produce Standard/Formalized Demographics Tables
  codingMatrices          Alternative Factor Coding Matrices for Linear
                          Model Formulae
  codyn                   Community Dynamics Metrics
  codyna                  Complex Dynamic Systems
  coefa                   Meta Analysis of Factor Analysis Based on
                          CO-Occurrence Matrices
  coefficientalpha        Robust Coefficient Alpha and Omega with Missing
                          and Non-Normal Data
  coefplot                Plots Coefficients from Fitted Models
  coenocliner             Coenocline Simulation
  coenoflex               Gradient-Based Coenospace Vegetation Simulator
  cofad                   Contrast Analyses for Factorial Designs
  coffee                  Chronological Ordering for Fossils and
                          Environmental Events
  cofid                   Copepod Fish Interaction Database
  coga                    Convolution of Gamma Distributions
  cogirt                  Cognitive Testing Using Item Response Theory
  coglasso                Collaborative Graphical Lasso - Multi-Omics
                          Network Reconstruction
  coglyphr                Compute Glyph Centers of Gravity from Image
                          Data
  cogmapr                 Cognitive Mapping Tools Based on Coding of
                          Textual Sources
  cognitoR                Authentication for 'Shiny' Apps with 'Amazon
                          Cognito'
  cograph                 Analysis and Visualization of Complex Networks
  cohetsurr               Assessing Complex Heterogeneity in Surrogacy
  cohortBuilder           Data Source Agnostic Filtering Tools
  cohorts                 Cohort Analysis Made Easy
  cohorttools             Cohort Data Analyses
  coin                    Conditional Inference Procedures in a
                          Permutation Test Framework
  coinmarketcapr          Get 'Cryptocurrencies' Market Cap Prices from
                          Coin Market Cap
  cointReg                Parameter Estimation and Inference in a
                          Cointegrating Regression
  cointests               Comprehensive Cointegration Tests with Fourier
                          and Panel Methods
  cointmonitoR            Consistent Monitoring of Stationarity and
                          Cointegrating Relationships
  cointsmall              Cointegration Tests with Structural Breaks in
                          Small Samples
  col2hex2col             Convert Between Color Names and Hex Codes
  cold                    Count Longitudinal Data
  coldrift                Lightweight Column Drift Detection for Tabular
                          Data
  collapse                Advanced and Fast Data Transformation
  collapsibleTree         Interactive Collapsible Tree Diagrams using
                          'D3.js'
  collateral              Quickly Evaluate Captured Side Effects
  collatz                 Functions Related to the Collatz/Syracuse/3n+1
                          Problem
  collections             High Performance Container Data Types
  collegeScorecard        US College Scorecard Data
  collett                 Datasets from "Modelling Survival Data in
                          Medical Research" by Collett
  colleyRstats            Functions to Streamline Statistical Analysis
                          and Reporting
  collidr                 Check for Namespace Collisions Across Packages
                          and Functions on CRAN
  collin                  Visualization the Effects of Collinearity in
                          Distributed Lag Models and Other Linear Models
  collinear               Automated Multicollinearity Management
  collpcm                 Collapsed Latent Position Cluster Model for
                          Social Networks
  coloc                   Colocalisation Tests of Two Genetic Traits
  colocPropTest           Proportional Testing for Colocalisation
                          Analysis
  colocalization          Normalized Spatial Intensity Correlation
  colocalized             Clusters of Colocalized Sequences
  colocboost              Multi-Context Colocalization Analysis for QTL
                          and GWAS Studies
  colorBlindness          Safe Color Set for Color Blindness
  colorDF                 Colorful Data Frames in R Terminal
  colorRamp2              Generate Color Mapping Functions
  colorRamps              Builds Color Tables
  colorSpec               Color Calculations with Emphasis on Spectral
                          Data
  colorblindcheck         Check Color Palettes for Problems with Color
                          Vision Deficiency
  colordistance           Distance Metrics for Image Color Similarity
  colorednoise            Simulate Temporally Autocorrelated Populations
  colorfast               Fast Conversion of R Colors to Color Component
                          Values and Native Packed Integer Format
  colorfindr              Extract Colors from Windows BMP, JPEG, PNG,
                          TIFF, and SVG Format Images
  colorhcplot             Colorful Hierarchical Clustering Dendrograms
  colorify                Intuitive Color and Palette Generation and
                          Modification
  colorist                Coloring Wildlife Distributions in Space-Time
  colorize                Render Text in Color for Markdown/Quarto
                          Documents
  colorizer               Colorize Old Images Using the 'DeOldify' Image
                          Colorization API
  colormap                Color Palettes using Colormaps Node Module
  colorplane              Basic S4 Classes and Methods for Mapping
                          Between Numeric Values and Colors
  colorr                  Color Palettes for EPL, MLB, NBA, NHL, and NFL
                          Teams
  colorrepel              Repel Visually Similar Colors for Colorblind
                          Users in Various Plots
  colors3d                Generate 2D and 3D Color Palettes
  colorsGen               Generation of Random Colors
  colorscience            Color Science Methods and Data
  colorspace              A Toolbox for Manipulating and Assessing Colors
                          and Palettes
  colouR                  Create Colour Palettes from Images
  colourlovers            R Client for the COLOURlovers API
  colourpicker            A Colour Picker Tool for Shiny and for
                          Selecting Colours in Plots
  colourspace             Convert from One Colour Space to Another, Print
                          a Ready-to-Paste Modern 'CSS' Syntax
  colourvalues            Assigns Colours to Values
  colourvision            Colour Vision Models
  cols                    Constrained Ordinary Least Squares
  cols4all                Colors for all
  colt                    Command-Line Color Themes
  comFuncs                Commonly Used Functions for R Shiny
                          Applications
  comat                   Creates Co-Occurrence Matrices of Spatial Data
  comato                  Analysis of Concept Maps and Concept Landscapes
  combat.enigma           Fit and Apply ComBat, LMM, or Prescaling
                          Harmonization for ENIGMA and Other Multisite
                          MRI Data
  combcoint               A Joint Test-Statistic for the Null of
                          Non-Cointegration
  combinat                combinatorics utilities
  combinatorics           Introduction to Some Combinatorial Relations
  combinedevents          Calculate Scores and Marks for Track and Field
                          Combined Events
  combiroc                Selection and Ranking of Omics Biomarkers
                          Combinations Made Easy
  combiter                Combinatorics Iterators
  combss                  Continuous Optimisation Towards Best Subset
                          Selection
  comclim                 Community Climate Statistics
  cometr                  'Comet' API for R
  comets                  Covariance Measure Tests for Conditional
                          Independence
  comexr                  Client for the Brazilian Foreign Trade
                          Statistics API ('ComexStat')
  comf                    Models and Equations for Human Comfort Research
  commafree               Call Functions Without Commas Between Arguments
  command                 Process Command Line Arguments
  commecometrics          Ecometric Models of Trait–Environment
                          Relationships at the Community Level
  common                  Solutions for Common Problems in Base R
  commonmark              High Performance CommonMark and Github Markdown
                          Rendering in R
  commonsMath             JAR Files of the Apache Commons Mathematics
                          Library
  comorbidPGS             Assessing Predisposition Between Phenotypes
                          using Polygenic Scores
  comorbidity             Computing Comorbidity Scores
  comorosmaps             Comoro Islands Maps
  compIndexBuilder        Composite Index Builder & Analytics 'shiny' App
  comparator              Comparison Functions for Clustering and Record
                          Linkage
  compare                 Comparing Objects for Differences
  compareC                Compare Two Correlated C Indices with
                          Right-Censored Survival Outcome
  compareCstat            Compare C-Statistics (Concordance) Between
                          Survival Models
  compareDF               Do a Git Style Diff of the Rows Between Two
                          Dataframes with Similar Structure
  compareGroups           Descriptive Analysis by Groups
  compareMCMCs            Compare MCMC Efficiency from 'nimble' and/or
                          Other MCMC Engines
  comparison              Multivariate Likelihood Ratio Calculation and
                          Evaluation
  compas                  Conformational Manipulations of Protein Atomic
                          Structures
  compdb                  Generate Compilation Database for Use with
                          'Clang' Tools
  comperank               Ranking Methods for Competition Results
  comperes                Manage Competition Results
  competitiontoolbox      A Graphical User Interface for Antitrust and
                          Trade Practitioners
  comphy                  Functions Used in the Book "Computational
                          Physics with R"
  compindPCA              Computation of Relative Weights of Variables
                          and Composite Index Values Based on PCA
  compindexR              Calculates Composite Index
  completejourney         Retail Shopping Data
  complex                 Time Series Analysis and Forecasting Using
                          Complex Variables
  complexNet              Complex Network Generation
  complexity              Calculate the Proportion of Permutations in
                          Line with an Informative Hypothesis
  complexlm               Linear Fitting for Complex Valued Data
  complmrob               Robust Linear Regression with Compositional
                          Data as Covariates
  compositeReliabilityInNestedDesigns
                          Optimizing the Composite Reliability in
                          Multivariate Nested Designs
  compositional.mle       Compositional Maximum Likelihood Estimation
  compositions            Compositional Data Analysis
  compound.Cox            Univariate Feature Selection and Compound
                          Covariate for Predicting Survival, Including
                          Copula-Based Analyses for Dependent Censoring
  comprehenr              List Comprehensions
  compute.es              Compute Effect Sizes
  comsimitv               Flexible Framework for Simulating Community
                          Assembly
  comstab                 Partitioning the Drivers of Stability of
                          Ecological Communities
  comtrade                Access and Analyse UN Comtrade International
                          Trade Data
  comtradr                Interface with the United Nations Comtrade API
  con2aqi                 Calculate the AQI from Pollutant Concentration
  con2lki                 Calculate the Dutch Air Quality Index (LKI)
  conMItion               Conditional Mutual Information Estimation for
                          Multi-Omics Data
  conText                 'a la Carte' on Text (ConText) Embedding
                          Regression
  conTree                 Contrast Trees and Boosting
  concatipede             Easy Concatenation of Fasta Sequences
  concaveman              A Very Fast 2D Concave Hull Algorithm
  concorR                 CONCOR and Supplemental Functions
  concordance             Product Concordance
  concstats               Market Structure, Concentration and Inequality
                          Measures
  cond                    Approximate Conditional Inference for Logistic
                          and Loglinear Models
  condGEE                 Parameter Estimation in Conditional GEE for
                          Recurrent Event Gap Times
  condMVNorm              Conditional Multivariate Normal Distribution
  condSURV                Estimation of the Conditional Survival Function
                          for Ordered Multivariate Failure Time Data
  condTruncMVN            Conditional Truncated Multivariate Normal
                          Distribution
  condathis               Run Any CLI Tool on a 'Conda' Environment
  condensr                Academic Group Website Generator
  condformat              Conditional Formatting in Data Frames
  condir                  Computation of P Values and Bayes Factors for
                          Conditioning Data
  conditionalProbNspades
                          Conditional Probabilities of Distributions
                          Across Hearts Hands
  conditionz              Control How Many Times Conditions are Thrown
  condor                  Interact with 'Condor' from R via SSH
  condorOptions           Trading Condor Options Strategies
  conductor               Create Tours in 'Shiny' Apps Using
                          'Shepherd.js'
  condvis                 Conditional Visualization for Statistical
                          Models
  condvis2                Interactive Conditional Visualization for
                          Supervised and Unsupervised Models in Shiny
  coneproj                Primal or Dual Cone Projections with Routines
                          for Constrained Regression
  conf                    Visualization and Analysis of Statistical
                          Measures of Confidence
  conf.design             Construction of factorial designs
  confMeta                Confidence Curves and P-Value Functions for
                          Meta-Analysis
  confcons                Confidence and Consistency of Predictive
                          Distribution Models
  confidence              Confidence Estimation of Environmental State
                          Classifications
  confidenceCurves        Frequentist Confidence Analysis for Clinical
                          Trials
  config                  Manage Environment Specific Configuration
                          Values
  configr                 An Implementation of Parsing and Writing
                          Configuration File (JSON/INI/YAML/TOML)
  configulaR              Manage Application Settings via '.env' or
                          '.ini' Files
  configural              Multivariate Profile Analysis
  confintROB              Confidence Intervals for Robust and Classical
                          Linear Mixed Model Estimators
  confinterpret           Descriptive Interpretations of Confidence
                          Intervals
  confintr                Confidence Intervals
  conflicted              An Alternative Conflict Resolution Strategy
  conforest               Conformal Random Forests for Response Surface
                          Emulation
  conformalForecast       Conformal Prediction Methods for
                          Multistep-Ahead Time Series Forecasting
  conformalInference.fd   Tools for Conformal Inference for Regression in
                          Multivariate Functional Setting
  conformalInference.multi
                          Conformal Inference Tools for Regression with
                          Multivariate Response
  conformalbayes          Jackknife(+) Predictive Intervals for Bayesian
                          Models
  conformalpvalue         Computes Conformal p-Values
  confoundvis             Visualization Tools for Sensitivity Analysis of
                          Unmeasured Confounding
  confreq                 Configural Frequencies Analysis Using
                          Log-Linear Modeling
  congress                Access the Congress.gov API
  conicfit                Algorithms for Fitting Circles, Ellipses and
                          Conics Based on the Work by Prof. Nikolai
                          Chernov
  conjoint                An Implementation of Conjoint Analysis Method
  conjurer                A Parametric Method for Generating Synthetic
                          Data
  conleyreg               Estimations using Conley Standard Errors
  conmet                  Construct Measurement Evaluation Tool
  connectapi              Utilities for Interacting with the 'Posit
                          Connect' Server API
  connectcreds            Manage 'OAuth' Credentials from 'Posit Connect'
  connected               Visualize and Improve Connectedness of Factors
                          in Tables
  connections             Integrates with the 'RStudio' Connections Pane
                          and 'pins'
  connectoModa            Download Data from Moda
  connector               Streamlining Data Access in Clinical Research
  connector.databricks    Expand 'connector' Package for 'Databricks'
                          Tables and Volumes
  connector.sharepoint    'Microsoft SharePoint' Interface for the
                          'connector' Package
  connectwidgets          Organize and Curate Your Content Within 'Posit
                          Connect'
  conos                   Clustering on Network of Samples
  conover.test            Conover-Iman Test of Multiple Comparisons Using
                          Rank Sums
  conquer                 Convolution-Type Smoothed Quantile Regression
  conquestr               An R Package to Extend 'ACER ConQuest'
  conrad                  Client for the Microsoft's 'Cognitive Services
                          Text to Speech REST' API
  conserveR               Identifying Conservation Prioritization Methods
                          Based on Data Availability
  consibiocloudclient     A Client for the 'Consibio Cloud' API
  consolechoice           An Easy and Quick Way to Loop a Character
                          Vector as a Menu in the Console
  consolidatePacks        Eliminate '@import' by Incorporating
                          Dependencies Directly into the Package
  consort                 Create Consort Diagram
  consortr                Interactive Consort Flow Diagrams
  consrq                  Constrained Quantile Regression
  constants               Reference on Constants, Units and Uncertainty
  constellation           Identify Event Sequences Using Time Series
                          Joins
  constrainedKriging      Constrained, Covariance-Matching Constrained
                          and Universal Point or Block Kriging
  constructive            Display Idiomatic Code to Construct Most R
                          Objects
  contFracR               Continued Fraction Generators and Evaluators
  contTimeCausal          Continuous Time Causal Models
  contactdata             Social Contact Matrices for 177 Countries
  contactsurveys          Download Contact Surveys for Use in Infectious
                          Disease Modelling
  contagionchannels       Two-Stage Detection and Attribution of
                          Cross-Border Financial Contagion Channels
  container               Extending Base 'R' Lists
  containr                Containerize Your 'R' Project
  contdid                 Difference-in-Differences with a Continuous
                          Treatment
  contentValidity         Content Validity Indices for Instrument
                          Development
  contentanalysis         Scientific Content and Citation Analysis from
                          PDF Documents
  contentid               An Interface for Content-Based Identifiers
  contextFind             Find Code Snippets with Context and Click to
                          Navigate Directly to Results
  contfrac                Continued Fractions
  contingency             Discrete Multivariate Probability Distributions
  contingencytables       Statistical Analysis of Contingency Tables
  contoso                 Dataset of the 'Contoso' Company
  contourPlot             Plots x,y,z Co-Ordinates in a Contour Map
  contourforest           Contour-Enhanced Forest Plots for Meta-Analysis
  contrast                A Collection of Contrast Methods
  contrastable            Consistent Contrast Coding for Factors
  contribution            A Tiny Contribution Table Generator Based on
                          'ggplot2'
  control                 A Control Systems Toolbox
  controlTest             Quantile Comparison for Two-Sample
                          Right-Censored Survival Data
  controlfunctionIV       Control Function Methods with Possibly Invalid
                          Instrumental Variables
  contsurvplot            Visualize the Effect of a Continuous Variable
                          on a Time-to-Event Outcome
  convdistr               Convolute Probabilistic Distributions
  convergEU               Monitoring Convergence of EU Countries
  convergenceDFM          Convergence and Dynamic Factor Models
  conversim               Conversation Similarity Analysis
  convertBCD              Convert Decimal to Binary-Coded Decimal (BCD)
                          Form and Vice Versa
  convertbonds            Use the Given Parameters to Calculate the
                          European Option Value
  convertid               Convert Gene IDs Between Each Other and Fetch
                          Annotations from Biomart
  convertr                Convert Between Units
  convevol                Analysis of Convergent Evolution
  convey                  Income Concentration Analysis with Complex
                          Survey Samples
  convoSPAT               Convolution-Based Nonstationary Spatial
                          Modeling
  cooccure                Co-Occurrence Network Construction and
                          Manipulation
  cookie                  HTTP Cookies Parser Middleware
  cookiecutter            Generate Project Files from a Template
  cookiemonster           Your Friendly Solution to Managing Browser
                          Cookies
  cookies                 Use Browser Cookies with 'shiny'
  cooltools               Practical Tools for Scientific Computations and
                          Visualizations
  coop                    Co-Operation: Fast Covariance, Correlation, and
                          Cosine Similarity Operations
  copBasic                General Bivariate Copula Theory and Many
                          Utility Functions
  copCAR                  Fitting the copCAR Regression Model for
                          Discrete Areal Data
  copcor                  Correlates of Protection and Correlates of Risk
                          Functions
  cope                    Coverage Probability Excursion (CoPE) Sets
  copent                  Estimating Copula Entropy and Transfer Entropy
  copernicusR             R Interface to Copernicus Marine Service
  cophescan               Adaptation of the Coloc Method for PheWAS
  copre                   Tools for Nonparametric Martingale Posterior
                          Sampling
  cops                    Cluster Optimized Proximity Scaling
  copula                  Multivariate Dependence with Copulas
  copulaData              Data Sets for Copula Modeling
  copulaSFM               Copula-Based Stochastic Frontier Models
  copulaSQM               Copula Based Stochastic Frontier Quantile Model
  copulaSim               Virtual Patient Simulation by Copula Invariance
                          Property
  copulaboost             Fitting Additive Copula Regression Models for
                          Binary Outcome Regression
  copulareg               Copula Regression
  copyseparator           Assembling Long Gene Copies from Short Read
                          Data
  corHMM                  Hidden Markov Models of Character Evolution
  corMLPE                 Correlation Structures for Symmetric Relational
                          Data
  corTESTsrd              Significance Testing of Rank Cross-Correlations
                          under SRD
  corTest                 Robust Tests for Equal Correlation
  cora                    Cora Data for Entity Resolution
  corazon                 Apply 'colorffy' Color Gradients Within 'shiny'
                          Elements
  corbouli                Corbae-Ouliaris Frequency Domain Filtering
  corclass                Correlational Class Analysis
  cord                    Community Estimation in G-Models via CORD
  cordillera              Calculation of the OPTICS Cordillera
  coreCT                  Programmatic Analysis of Sediment Cores Using
                          Computed Tomography Imaging
  coreNLP                 Wrappers Around Stanford CoreNLP Tools
  coreSim                 Core Functionality for Simulating Quantities of
                          Interest from Generalised Linear Models
  coreheat                Correlation Heatmaps
  corehunter              Multi-Purpose Core Subset Selection
  corella                 Prepare, Manipulate and Check Data to Comply
                          with Darwin Core Standard
  corels                  R Binding for the 'Certifiably Optimal RulE
                          ListS (Corels)' Learner
  coresynth               Fast and Unified Synthetic Control Methods
  corkscrew               Preprocessor for Data Modeling
  corlink                 Record Linkage, Incorporating Imputation for
                          Missing Agreement Patterns, and Modeling
                          Correlation Patterns Between Fields
  corncob                 Count Regression for Correlated Observations
                          with the Beta-Binomial
  cornet                  Penalised Regression for Dichotomised Outcomes
  coro                    'Coroutines' for R
  coroICA                 Confounding Robust Independent Component
                          Analysis for Noisy and Grouped Data
  corona                  Coronavirus ('Rona') Data Exploration
  coronavirus             The 2019 Novel Coronavirus COVID-19 (2019-nCoV)
                          Dataset
  corpcor                 Efficient Estimation of Covariance and
                          (Partial) Correlation
  corpmetrics             Tools for Valuation, Financial Metrics and
                          Modeling in Corporate Finance
  corpora                 Statistics and Data Sets for Corpus Frequency
                          Data
  corporaexplorer         A 'Shiny' App for Exploration of Text
                          Collections
  corpustools             Managing, Querying and Analyzing Tokenized Text
  corr2D                  Implementation of 2D Correlation Analysis in R
  corrDNA                 Finding Associations in Position-Wise Aligned
                          DNA Sequence Dataset
  corrMCT                 Correlated Weighted Hochberg
  corrRF                  Clustered Random Forests for Optimal Prediction
                          and Inference of Clustered Data
  corrViz                 Visualise Correlations
  correctR                Corrected Test Statistics for Comparing Machine
                          Learning Models on Correlated Samples
  correctedAUC            Correcting AUC for Measurement Error
  correctref              Correct and Standardize References for
                          Scientific Manuscripts
  correlatio              Visualize Details Behind Pearson's Correlation
                          Coefficient
  correlation             Methods for Correlation Analysis
  correlationfunnel       Speed Up Exploratory Data Analysis (EDA) with
                          the Correlation Funnel
  correlationr            Conduct Robust Correlations on Non-Normal Data
  correlbinom             Correlated Binomial Probabilities
  correspondenceTables    Creating Correspondence Tables Between Two
                          Statistical Classifications
  corrfuns                Correlation Coefficient Related Functions
  corrgram                Plot a Correlogram
  corrmeta                Correlated Meta-Analysis
  corrplot                Visualization of a Correlation Matrix
  corrr                   Correlations in R
  corrselect              Correlation-Based and Model-Based Predictor
                          Pruning
  corrsieve               Software for Summarising and Evaluating
                          STRUCTURE Output
  corrtable               Creates and Saves Out a Correlation Table with
                          Significance Levels Indicated
  corset                  Arbitrary Bounding of Series and Time Series
                          Objects
  corteza                 AI Agent Runtime
  corto                   Inference of Gene Regulatory Networks
  corx                    Create and Format Correlation Matrices
  cosCorr                 Cosine-Correlation Coefficient for Vector
                          Variables
  cosa                    Bound Constrained Optimal Sample Size
                          Allocation
  cosimmr                 Fast Fitting of Stable Isotope Mixing Models
                          with Covariates
  cosinor                 Tools for Estimating and Predicting the Cosinor
                          Model
  cosinor2                Extended Tools for Cosinor Analysis of Rhythms
  cosmic                  Conditional Ordinal Stereotype Model for
                          Incident-Level Comparison
  cosmicsig               Mutational Signatures from COSMIC (Catalogue of
                          Somatic Mutations in Cancer)
  cosmoFns                Cosmological Distances, Times, Luminosities,
                          Etc
  cosso                   Fit Regularized Nonparametric Regression Models
                          Using COSSO Penalty
  cossonet                Sparse Nonparametric Regression for
                          High-Dimensional Data
  costat                  Time Series Costationarity Determination
  costsensitive           Cost-Sensitive Multi-Class Classification
  cotram                  Count Transformation Models
  cotrend                 Consistent Co-Trending Rank Selection
  countDM                 Estimation of Count Data Models
  countHMM                Penalized Estimation of Flexible Hidden Markov
                          Models for Time Series of Counts
  countSTAR               Flexible Modeling of Count Data
  countcolors             Locates and Counts Pixels Within Color Range(s)
                          in Images
  countdata               The Beta-Binomial Test for Count Data
  countdown               A Countdown Timer for HTML Presentations,
                          Documents, and Web Apps
  counterfactuals         Counterfactual Explanations
  countfitteR             Comprehensive Automatized Evaluation of
                          Distribution Models for Count Data
  countgmifs              Discrete Response Regression for
                          High-Dimensional Data
  countland               Analysis of Biological Count Data, Especially
                          from Single-Cell RNA-Seq
  countmaskr              Small Cell Masking Tool for One- & Two-Way
                          Tabular Reports
  countprop               Calculate Model-Based Metrics of
                          Proportionality on Count-Based Compositional
                          Data
  countries               Deal with Country Data in an Easy Way
  countrycode             Convert Country Names and Country Codes
  countsplit              Splitting a Count Matrix into Independent Folds
  countts                 Thomson Sampling for Zero-Inflated Count
                          Outcomes
  countyhealthR           Programmatic Access to County Health Rankings &
                          Roadmaps Data
  coupling                Analysis of Coupling Coordination Degree
  couplr                  Optimal Pairing and Matching via Linear
                          Assignment
  courieR                 Migrate Installed R Packages Between R Versions
  covBM                   Brownian Motion Processes for 'nlme'-Models
  covKCD                  Covariance Estimation for Matrix Data with the
                          Kronecker-Core Decomposition
  covRobust               Robust Covariance Estimation via Nearest
                          Neighbor Cleaning
  covadap                 Implement Covariate-Adaptive Randomization
  covafillr               Local Polynomial Regression of State Dependent
                          Covariates in State-Space Models
  covalchemy              Constructing Joint Distributions with Control
                          Over Statistical Properties
  covatest                Tests on Properties of Space-Time Covariance
                          Functions
  coveR2                  Process Digital Cover Photography Images of
                          Tree Crowns
  coveffectsplot          Produce Forest Plots to Visualize Covariate
                          Effects
  covequal                Test for Equality of Covariance Matrices
  covercorr               Coverage Correlation Coefficient and Testing
                          for Independence
  covfefe                 Political Linguistics Toolkit - Gaffes,
                          Phonetics, and Text Transformation
  covglasso               Sparse Covariance Matrix Estimation
  covid19.analytics       Load and Analyze Live Data from the COVID-19
                          Pandemic
  covid19br               Brazilian COVID-19 Pandemic Data
  covid19dbcand           Selected 'Drugbank' Drugs for COVID-19
                          Treatment Related Data in R Format
  covid19france           Cases of COVID-19 in France
  covid19india            Pulling Clean Data from Covid19india.org
  covid19italy            The 2019 Novel Coronavirus COVID-19 (2019-nCoV)
                          Italy Dataset
  covid19sf               The Covid19 San Francisco Dataset
  covid19srilanka         The 2019 Novel Coronavirus COVID-19 (2019-nCoV)
                          Data in Sri Lanka
  covid19tunisia          Cases of COVID-19 in Tunisia
  covid19us               Cases of COVID-19 in the United States
  covidcast               Client for Delphi's 'COVIDcast Epidata' API
  covidnor                Public COVID-19 Data for Norway
  covidprobability        Estimate the Unit-Wide Probability of COVID-19
  covidsymptom            COVID Symptom Study Sweden Open Dataset
  covr                    Test Coverage for Packages
  covsim                  VITA, IG and PLSIM Simulation for Given
                          Covariance and Marginals
  covtracer               Contextualizing Tests
  cowbell                 Performs Segmented Linear Regression on Two
                          Independent Variables
  cowfootR                Dairy Farm Carbon Footprint Assessment
  cowplot                 Streamlined Plot Theme and Plot Annotations for
                          'ggplot2'
  cowsay                  Messages, Warnings, Strings with Ascii Animals
  cox.rvph                Remedy the Violation of the Proportional
                          Hazards Assumption of Cox Regression
  coxerr                  Cox Regression with Dependent Error in
                          Covariates
  coxme                   Mixed Effects Cox Models
  coxphSGD                Stochastic Gradient Descent log-Likelihood
                          Estimation in Cox Proportional Hazards Model
  coxphf                  Cox Regression with Firth's Penalized
                          Likelihood
  coxphm                  Time-to-Event Data Analysis with Missing
                          Survival Times
  coxphw                  Weighted Estimation in Cox Regression
  coxrobust               Fit Robustly Proportional Hazards Regression
                          Model
  coxsei                  Fitting a CoxSEI Model
  cp4p                    Calibration Plot for Proteomics
  cpa                     Confirmatory Path Analysis Through 'd-sep'
                          Tests
  cpam                    Changepoint Additive Models for Time Series
                          Omics Data
  cpd                     Complex Pearson Distributions
  cpfa                    Classification with Parallel Factor Analysis
  cpgfR                   Consolidates Information from the Federal
                          Government Payment Card
  cpi                     Conditional Predictive Impact
  cplm                    Compound Poisson Linear Models
  cplots                  Plots for Circular Data
  cpm                     Sequential and Batch Change Detection Using
                          Parametric and Nonparametric Methods
  cpmBigData              Fitting Semiparametric Cumulative Probability
                          Models for Big Data
  cpmr                    Connectome Predictive Modelling in R
  cpop                    Detection of Multiple Changes in Slope in
                          Univariate Time-Series
  cpp11                   A C++11 Interface for R's C Interface
  cpp11armadillo          An 'Armadillo' Interface
  cpp11bigwig             Read bigWig and bigBed Files
  cpp11eigen              An 'Eigen' Interface
  cpp11qpdf               Split, Combine and Compress PDF Files
  cpp4r                   Header-Only 'C++' and 'R' Interface
  cppRouting              Algorithms for Routing and Solving the Traffic
                          Assignment Problem
  cppSim                  Fast and Memory Efficient Spatial Interaction
                          Models
  cppally                 A 'C++20' API for R
  cppcheckR               Check 'C' and 'C++' Files using 'Cppcheck'
  cppcontainers           'C++' Standard Template Library Containers
  cppdoubles              Fast Relative Comparisons of Floating Point
                          Numbers in 'C++'
  cpr                     Control Polygon Reduction
  cprobit                 Conditional Probit Model for Analysing
                          Continuous Outcomes
  cprr                    Functions for Working with Danish CPR Numbers
  cpsR                    Load CPS Microdata into R Using the 'Census
                          Bureau Data' API
  cpsurvsim               Simulating Survival Data from Change-Point
                          Hazard Distributions
  cpsvote                 A Toolbox for Using the CPS’s Voting and
                          Registration Supplement
  cpt                     Classification Permutation Test
  cptcity                 'cpt-city' Colour Gradients
  cqn                     Conditional quantile normalization
  cqrReg                  Quantile, Composite Quantile Regression and
                          Regularized Versions
  cquad                   Conditional Maximum Likelihood for Quadratic
                          Exponential Models for Binary Panel Data
  cragg                   Tests for Weak Instruments in R
  cramR                   Cram Method for Efficient Simultaneous Learning
                          and Evaluation
  cramer                  Multivariate Nonparametric Cramer-Test for the
                          Two-Sample-Problem
  crandep                 Network Analysis of Dependencies of CRAN
                          Packages
  crane                   Supplements the 'gtsummary' Package for
                          Pharmaceutical Reporting
  crank                   Completing Ranks
  cranlike                Tools for 'CRAN'-Like Repositories
  cranlogs                Download Logs from the 'RStudio' 'CRAN' Mirror
  cranly                  Package Directives and Collaboration Networks
                          in CRAN
  crassmat                Conditional Random Sampling Sparse Matrices
  crawl                   Fit Continuous-Time Correlated Random Walk
                          Models to Animal Movement Data
  crayon                  Colored Terminal Output
  crayons                 Color Palettes from Crayon Boxes
  crc32c                  Cyclic Redundancy Check with CPU-Specific
                          Acceleration
  crch                    Censored Regression with Conditional
                          Heteroscedasticity
  crctStepdown            Univariate Analysis of Cluster Trials with
                          Multiple Outcomes
  cre.dcf                 Discounted Cash Flow Tools for Commercial Real
                          Estate
  createLogicalPCM        Create Logical Pairwise Comparison Matrix for
                          the Analytic Hierarchy Process
  credentials             Tools for Managing SSH and Git Credentials
  creditr                 Credit Default Swaps
  credsubs                Credible Subsets
  credule                 Credit Default Swap Functions
  creepyalien             Puzzle Game for the R Console
  crew                    A Distributed Worker Launcher Framework
  crew.aws.batch          A Crew Launcher Plugin for AWS Batch
  crew.cluster            Crew Launcher Plugins for Traditional
                          High-Performance Computing Clusters
  cricketdata             International Cricket Data
  cricketr                Analyze Cricketers and Cricket Teams Based on
                          ESPN Cricinfo Statsguru
  crimCV                  Group-Based Modelling of Longitudinal Data
  crimedata               Access Crime Data from the Open Crime Database
  crimedatasets           A Comprehensive Collection of Crime-Related
                          Datasets
  crimeutils              A Comprehensive Set of Functions to Clean,
                          Analyze, and Present Crime Data
  crisp                   Fits a Model that Partitions the Covariate
                          Space into Blocks in a Data- Adaptive Way
  crispRdesignR           Guide Sequence Design for CRISPR/Cas9
  criticality             Modeling Fissile Material Operations in Nuclear
                          Facilities
  criticalpath            An Implementation of the Critical Path Method
  critpath                Setting the Critical Path in Project Management
  crm12Comb               Phase I/II CRM Based Drug Combination Design
  crmPack                 Object-Oriented Implementation of Dose
                          Escalation Designs
  crmReg                  Cellwise Robust M-Regression and SPADIMO
  crmn                    CCMN and Other Normalization Methods for
                          Metabolomics Data
  crochet                 Implementation Helper for '[' and '[<-' of
                          Custom Matrix-Like Types
  cromwellDashboard       A Dashboard to Visualize Scientific Workflows
                          in 'Cromwell'
  cronR                   Schedule R Scripts and Processes with the
                          'cron' Job Scheduler
  crone                   Structural Crystallography in 1d
  cronologia              Create an HTML Vertical Timeline from a Data
                          Frame in 'rmarkdown' and 'shiny'
  crookR                  Synthetic Crook Deformations in Stem Point
                          Clouds
  crop                    Graphics Cropping Tool
  cropDemand              Spatial Crop Water Demand for Brazil
  cropZoning              Climate Crop Zoning Based in Air Temperature
                          for Brazil
  cropcircles             Crops an Image to a Circle
  cropdatape              Open Data of Agricultural Production of Crops
                          of Peru
  cropgrowdays            Crop Growing Degree Days and Agrometeorological
                          Calculations
  crops                   Changepoints for a Range of Penalties (CROPS)
  crossdes                Construction of Crossover Designs
  crossfit                A Graph-Based Cross-Fitting Engine in R
  crosshap                Local Haplotype Clustering and Visualization
  crosslag                Perform Linear or Nonlinear Cross Lag Analysis
  crossmap                Apply Functions to All Combinations of List
                          Elements
  crossmatch              The Cross-Match Test
  crossnma                Cross-Design & Cross-Format Network
                          Meta-Analysis and Regression
  crossrun                Joint Distribution of Number of Crossings and
                          Longest Run
  crosstable              Crosstables for Descriptive Analyses
  crosstalk               Inter-Widget Interactivity for HTML Widgets
  crossurr                Cross-Fitting for Doubly Robust Evaluation of
                          High-Dimensional Surrogate Markers
  crossval                Generic Functions for Cross Validation
  crossvalidationCP       Cross-Validation for Change-Point Regression
  crosswalkr              Rename and Encode Data Frames Using External
                          Crosswalk Files
  crov                    Constrained Regression Model for an Ordinal
                          Response and Ordinal Predictors
  crqa                    Unidimensional and Multidimensional Methods for
                          Recurrence Quantification Analysis
  crrSC                   Competing Risks Regression for Stratified and
                          Clustered Data
  crrcbcv                 Bias-Corrected Variance for Competing Risks
                          Regression with Clustered Data
  crrstep                 Stepwise Covariate Selection for the Fine &
                          Gray Competing Risks Regression Model
  crs                     Categorical Regression Splines
  crseEventStudy          A Robust and Powerful Test of Abnormal Stock
                          Returns in Long-Horizon Event Studies
  crsmeta                 Extract Coordinate System Metadata
  crsnls                  Nonlinear Regression Parameters Estimation by
                          'CRS4HC' and 'CRS4HCe'
  crstools                Tools to Work with Projections
  crsuggest               Obtain Suggested Coordinate Reference System
                          Information for Spatial Data
  crt2power               Designing Cluster-Randomized Trials with Two
                          Continuous Co-Primary Outcomes
  crul                    HTTP Client
  crumble                 Flexible and General Mediation Analysis Using
                          Riesz Representers
  crunch                  Crunch.io Data Tools
  cruts                   Interface to Climatic Research Unit Time-Series
                          Version 3.21 Data
  crwbmetareg             Cluster Robust Wild Bootstrap Meta Regression
  cry                     Statistics for Structural Crystallography
  crypto2                 Download Crypto Currency Data from
                          'CoinMarketCap' without 'API'
  cryptoQuotes            Open Access to Cryptocurrency Market Data,
                          Sentiment Indicators and Interactive Charts
  cryptography            Encrypts and Decrypts Text Ciphers
  cryptorng               Access System Cryptographic Pseudorandom Number
                          Generators
  cryptotrackr            An Interface to Crypto Data Sources
  cryptoverse             Visualization and Analytics for the Cryptoverse
  cryptowatchR            An API Wrapper for 'Cryptowatch'
  crystract               Crystallographic Information File (CIF) Data
                          Processing Tools
  csa                     A Cross-Scale Analysis Tool for
                          Model-Observation Visualization and Integration
  csalert                 Alerts from Public Health Surveillance Data
  csampling               Functions for Conditional Simulation in
                          Regression-Scale Models
  csaw                    ChIP-Seq Analysis with Windows
  csbewma                 Cumulative Standardized Binomial EWMA for
                          Multiple Stream Processes
  csci                    Current Status Confidence Intervals
  csdata                  Structural Data for Norway
  csdb                    An Abstracted System for Easily Working with
                          Databases with Large Datasets
  csdm                    Cross-Sectional Dependence Models
  csemGT                  Conditional Standard Error of Measurement in
                          Generalizability Theory
  cshapes                 The CShapes 2.0 Dataset and Utilities
  csmGmm                  Conditionally Symmetric Multidimensional
                          Gaussian Mixture Model
  csmaps                  Preformatted Maps of Norway that Don't Need
                          Geolibraries
  csmbuilder              A Collection of Tools for Building Cropping
                          System Models
  csmpv                   Biomarker Confirmation, Selection, Modelling,
                          Prediction, and Validation
  csn                     Closed Skew-Normal Distribution
  csodata                 Download Data from the CSO 'PxStat' API
  cspp                    A Tool for the Correlates of State Policy
                          Project Data
  csppData                Data Only: The Correlates of State Policy
                          Project Dataset
  csquares                Concise Spatial Query and Representation System
                          (c-Squares)
  csranks                 Statistical Tools for Ranks
  cssTools                Cognitive Social Structure Tools
  cstab                   Selection of Number of Clusters via Normalized
                          Clustering Instability
  cstidy                  Helpful Functions for Cleaning Surveillance
                          Data
  cstime                  Date and Time Functions for Public Health
                          Purposes
  csurvey                 Constrained Regression for Survey Data
  csutil                  Common Base-R Problems Relating to Lists
  csv                     Read and Write CSV Files with Selected
                          Conventions
  csvread                 Fast Specialized CSV File Loader
  csvwr                   Read and Write CSV on the Web (CSVW) Tables and
                          Metadata
  csvy                    Import and Export CSV Data with a YAML Metadata
                          Header
  ctablerseh              Processing Survey Data with Confidence
                          Intervals Like 'SPSS' Software
  ctbi                    A Procedure to Clean, Decompose and Aggregate
                          Timeseries
  ctf                     Read and Write Column Text Format (CTF)
  ctgdist                 Likert Category Distance Calculator
  ctgt                    Closed Testing with Globaltest for Pathway
                          Analysis
  cthist                  Clinical Trial Registry History
  cthreshER               Continuous Threshold Expectile Regression
  ctl                     Correlated Trait Locus Mapping
  ctlr                    Clinical Tolerance Limits for Assessing
                          Agreement
  ctmcd                   Estimating the Parameters of a Continuous-Time
                          Markov Chain from Discrete-Time Data
  ctmcmove                Modeling Animal Movement with Continuous-Time
                          Discrete-Space Markov Chains
  ctmle                   Collaborative Targeted Maximum Likelihood
                          Estimation
  ctmm                    Continuous-Time Movement Modeling
  ctmva                   Continuous-Time Multivariate Analysis
  ctoclient               A Modern and Flexible Data Pipeline for
                          'SurveyCTO'
  ctqr                    Censored and Truncated Quantile Regression
  ctrdata                 Retrieve and Analyze Clinical Trials Data from
                          Public Registers
  ctrialsgov              Query Data from U.S. National Library of
                          Medicine's Clinical Trials Database
  ctrlGene                Assess the Stability of Candidate Housekeeping
                          Genes
  ctrlvee                 Extract External 'R' Code and Insert Inline
  cts                     Continuous Time Autoregressive Models
  ctsem                   Continuous Time Structural Equation Modelling
  ctsemOMX                Continuous Time Structural Equation Modelling -
                          Old 'OpenMx'-Based Version
  ctsfeatures             Analyzing Categorical Time Series
  ctsmTMB                 Continuous Time Stochastic Modelling using
                          Template Model Builder
  ctv                     CRAN Task Views
  ctxR                    Utilities for Interacting with the 'CTX' APIs
  ctypesio                Read and Write Standard 'C' Types from Files,
                          Connections and Raw Vectors
  cuRe                    Parametric Cure Model Estimation
  cubar                   Codon Usage Bias Analysis
  cubature                Adaptive Multivariate Integration over
                          Hypercubes
  cubble                  A Vector Spatio-Temporal Data Structure for
                          Data Analysis
  cubelyr                 A Data Cube 'dplyr' Backend
  cubeview                View 3D Raster Cubes Interactively
  cubfits                 Codon Usage Bias Fits
  cubicBsplines           Computation of a Cubic B-Spline Basis and Its
                          Derivatives
  cubing                  Rubik's Cube Solving
  cucumber                Behavior-Driven Development for R
  cuda.ml                 R Interface for the RAPIDS cuML Suite of
                          Libraries
  cultevo                 Tools, Measures and Statistical Tests for
                          Cultural Evolution
  cumprinc                Functions Centered Around Microsoft Excel
                          Cumprinc Function
  cumulcalib              Cumulative Calibration Assessment for
                          Prediction Models
  cuperdec                Cumulative Percent Decay Curve Generator
  curephEM                NPMLE for Logistic-Cox Cure-Rate Model
  cureplots               CURE (Cumulative Residual) Plots
  curesurv                Mixture and Non Mixture Parametric Cure Models
                          to Estimate Cure Indicators
  curl                    A Modern and Flexible Web Client for R
  currencyapi             Client for the 'currencyapi.com' Currency
                          Conversion API
  currentSurvival         Estimation of CCI and CLFS Functions
  curriculr               Data-Driven CVs with 'Quarto' and 'Typst'
  currr                   Apply Mapping Functions in Frequent Saving
  curry                   Partial Function Application with %<%, %-<%,
                          and %><%
  cursr                   Cursor and Terminal Manipulation
  curtailment             Finds Binary Outcome Designs Using Stochastic
                          Curtailment
  curvHDR                 Filtering of Flow Cytometry Samples
  curveDepth              Tukey Curve Depth and Distance in the Space of
                          Curves
  curves                  Model-Agnostic Response Curves for Fitted
                          Models
  curvir                  Specify Reserve Demand Curves
  cusp                    Cusp-Catastrophe Model Fitting Using Maximum
                          Likelihood
  custom.gauss.quad       Custom Made Gauss Quadrature Nodes and Weights
  customiser              Use R Markdown to Write your "Rprofile"
  customizedTraining      Customized Training for Lasso and Elastic-Net
                          Regularized Generalized Linear Models
  customknitrender        Easily Switch Output Format of 'Rmarkdown'
                          Files with Shared Frontmatter
  cusumcharter            Easier CUSUM Control Charts
  cutoff                  Seek the Significant Cutoff Value
  cutpoint                Estimate Cutpoints of Metric Variables in the
                          Context of Cox Regression
  cutpointr               Determine and Evaluate Optimal Cutpoints in
                          Binary Classification Tasks
  cv                      Cross-Validating Regression Models
  cvAUC                   Cross-Validated Area Under the ROC Curve
                          Confidence Intervals
  cvCovEst                Cross-Validated Covariance Matrix Estimation
  cvGEE                   Cross-Validated Predictions from GEE
  cvLM                    Cross-Validation for Linear and Ridge
                          Regression Models
  cvTools                 Cross-Validation Tools for Regression Models
  cvap                    Citizen Voting Age Population
  cvar                    Compute Expected Shortfall and Value at Risk
                          for Continuous Distributions
  cvasi                   Calibration, Validation, and Simulation of TKTD
                          Models
  cvcqv                   Coefficient of Variation (CV) with Confidence
                          Intervals (CI)
  cvcrand                 Efficient Design and Analysis of Cluster
                          Randomized Trials
  cvdprevent              Access and Analyse Data from the 'CVD Prevent'
                          API
  cvequality              Tests for the Equality of Coefficients of
                          Variation from Multiple Groups
  cvmaPLFAM               Cross-Validation Model Averaging for Partial
                          Linear Functional Additive Models
  cvmdisc                 Cramer von Mises Tests for Discrete or Grouped
                          Distributions
  cvmgof                  Cramer-von Mises Goodness-of-Fit Tests
  cvms                    Cross-Validation for Model Selection
  cvsem                   SEM Model Comparison with K-Fold
                          Cross-Validation
  cwot                    Cauchy Weighted Joint Test for Pharmacogenetics
                          Analysis
  cxr                     A Toolbox for Modelling Species Coexistence in
                          R
  cxxfunplus              Extend 'cxxfunction' by Saving the Dynamic
                          Shared Objects
  cyclestreets            Cycle Routing and Data for Cycling Advocacy
  cyclocomp               Cyclomatic Complexity of R Code
  cycloids                Tools for Calculating Hypocycloids,
                          Epicycloids, Hypotrochoids, and Epitrochoids
  cyclomort               Survival Modeling with a Periodic Hazard
                          Function
  cyclotomic              The Field of Cyclotomic Numbers
  cyjShiny                Cytoscape.js Shiny Widget (cyjShiny)
  cylcop                  Circular-Linear Copulas with Angular Symmetry
                          for Movement Data
  cymruservices           Query 'Team Cymru' 'IP' Address, Autonomous
                          System Number ('ASN'), Border Gateway Protocol
                          ('BGP'), Bogon and 'Malware' Hash Data Services
  cyphr                   High Level Encryption Wrappers
  cystiSim                Agent-Based Model for Taenia_solium
                          Transmission and Control
  cytofan                 Plot Fan Plots for Cytometry Data using
                          'ggplot2'
  cytolib                 C++ infrastructure for representing and
                          interacting with the gated cytometry data
  cytometree              Automated Cytometry Gating and Annotation
  cytominer               Methods for Image-Based Cell Profiling
  czechrates              Czech Interest & Foreign Exchange Rates
  czso                    Use Open Data from the Czech Statistical Office
                          in R
  d3Network               Tools for creating D3 JavaScript network, tree,
                          dendrogram, and Sankey graphs from R
  d3Tree                  Create Interactive Collapsible Trees with the
                          JavaScript 'D3' Library
  d3plus                  Seamless 'D3Plus' Integration
  d3po                    Fast and Beautiful Interactive Visualization
                          for 'Markdown' and 'Shiny'
  d3r                     'd3.js' Utilities for R
  d4storagehub4R          Interface to 'D4Science' 'StorageHub' API
  dBlockmodeling          Deterministic Blockmodeling of Signed, One-Mode
                          and Two-Mode Networks
  dCUR                    Dimension Reduction with Dynamic CUR
  dChipIO                 Methods for Reading dChip Files
  dCovTS                  Distance Covariance and Correlation for Time
                          Series Analysis
  dHSIC                   Independence Testing via Hilbert Schmidt
                          Independence Criterion
  dLagM                   Time Series Regression Models with Distributed
                          Lag Models
  dMod                    Dynamic Modeling and Parameter Estimation in
                          ODE Models
  dMrs                    Competing Risk in Dependent Net Survival
                          Analysis
  dPCP                    Automated Analysis of Multiplex Digital PCR
                          Data
  dQTG.seq                A BSA Software for Detecting All Types of QTLs
                          in BC, DH, RIL and F2
  dRiftDM                 Estimating (Time-Dependent) Drift Diffusion
                          Models
  dSTEM                   Multiple Testing of Local Extrema for Detection
                          of Change Points
  dTBM                    Multi-Way Spherical Clustering via
                          Degree-Corrected Tensor Block Models
  daarem                  Damped Anderson Acceleration with Epsilon
                          Monotonicity for Accelerating EM-Like Monotone
                          Algorithms
  dabestr                 Data Analysis using Bootstrap-Coupled
                          Estimation
  dabr                    Database Management with R
  dacc                    Detection and Attribution Analysis of Climate
                          Change
  dad                     Three-Way / Multigroup Data Analysis Through
                          Densities
  dada2                   Accurate, high-resolution sample inference from
                          amplicon sequencing data
  dadjoke                 Displays a Dad Joke
  dadjokeapi              Return a Random Dad Joke
  dados                   Translate Datasets to Portuguese
  dae                     Functions Useful in the Design and ANOVA of
                          Experiments
  daewr                   Design and Analysis of Experiments with R
  daff                    Diff, Patch and Merge for Data.frames
  dafs                    Data Analysis for Forensic Scientists
  dagHMM                  Directed Acyclic Graph HMM with TAN Structured
                          Emissions
  dagR                    Directed Acyclic Graphs: Analysis and Data
                          Simulation
  dagirlite               Spatial Vector Data for Danmarks Administrative
                          Geografiske Inddeling DAGI
  dagitty                 Graphical Analysis of Structural Causal Models
  dagwood                 DAGs with Omitted Objects Displayed (DAGWOOD)
  daiR                    Interface with Google Cloud Document AI API
  dail                    Data from Access to Information Law
  daiquiri                Data Quality Reporting for Temporal Datasets
  daltoolbox              Leveraging Experiment Lines to Data Analytics
  daltoolboxdp            Deep Python Extensions for 'daltoolbox'
  dam                     Data Analysis Metabolomics
  damAOI                  Create an 'Area of Interest' Around a
                          Constructed Dam for Comparative Impact
                          Evaluations
  dampack                 Decision-Analytic Modeling Package
  damr                    Interface to Drosophila Activity Monitor System
                          Result Files
  dang                    'Dang' Associated New Goodies
  dani                    Design and Analysis of Non-Inferiority Trials
  dann                    Discriminant Adaptive Nearest Neighbor
                          Classification
  dapper                  Data Augmentation for Private Posterior
                          Estimation
  daqapo                  Data Quality Assessment for Process-Oriented
                          Data
  darksky                 Tools to Work with the 'Dark Sky' 'API'
  dartR                   Importing and Analysing 'SNP' and 'Silicodart'
                          Data Generated by Genome-Wide Restriction
                          Fragment Analysis
  dartR.base              Analysing 'SNP' and 'Silicodart' Data - Basic
                          Functions
  dartR.captive           Analysing 'SNP' Data to Support Captive
                          Breeding
  dartR.data              Auxiliary Data Package for Our Main Package
                          'dartR'
  dartR.popgen            Analysing 'SNP' and 'Silicodart' Data Generated
                          by Genome-Wide Restriction Fragment Analysis
  dartR.sexlinked         Analysing SNP Data to Identify Sex-Linked
                          Markers
  dartR.sim               Computer Simulations of 'SNP' Data
  dartR.spatial           Applying Landscape Genomic Methods on 'SNP' and
                          'Silicodart' Data
  dartRverse              Install and Load the 'dartRverse' Suits of
                          Packages
  dashboardthemes         Customise the Appearance of 'shinydashboard'
                          Applications using Themes
  dat                     Tools for Data Manipulation
  data.checker            Data Checker for Validating Data Frames Against
                          Defined Schema
  data.table              Extension of `data.frame`
  data.table.threads      Analyze Multi-Threading Performance for
                          'data.table' Functions
  data.tree               General Purpose Hierarchical Data Structure
  data.validator          Automatic Data Validation and Reporting
  data360r                Wrapper for 'TCdata360' and 'Govdata360' API
  dataCompare             A 'shiny' App to Compare Two Data Frames
  dataMaid                A Suite of Checks for Identification of
                          Potential Errors in a Data Frame as Part of the
                          Data Screening Process
  dataMojo                Reshape Data Table
  dataPreparation         Automated Data Preparation
  dataReporter            Reproducible Data Screening Checks and Report
                          of Possible Errors
  dataRetrieval           Retrieval Functions for USGS and EPA Hydrology
                          and Water Quality Data
  dataSDA                 Datasets and Basic Statistics for Symbolic Data
                          Analysis
  datacleanr              Interactive and Reproducible Data Cleaning
  datacommons             Client for the 'Google Data Commons API V2'
  datacult                Exploratory Data Analysis for Public Policy
                          Applied to Culture
  datacutr                SDTM Datacut
  datadictionary          Create a Data Dictionary
  datadiff                Data Validation Based on YAML Rules
  datadogr                R Client for 'Datadog' API
  datadriftR              Concept Drift Detection Methods for Stream Data
  dataframeexplorer       Familiarity with Dataframes Before Data
                          Manipulation
  datafsm                 Estimating Finite State Machine Models from
                          Data
  datamedios              Scraping Chilean Media
  datamods                Modules to Import and Manipulate Data in
                          'Shiny'
  datamuseum              Spatial and Taxonomic Data Utilities for
                          Specimen Datasets
  datana                  Datasets and Functions to Accompany Analisis De
                          Datos Con R
  datanugget              Create, and Refine Data Nuggets
  dataonderivatives       Easily Source Publicly Available Data on
                          Derivatives
  dataone                 R Interface to the 'DataONE' REST API
  datapack                A Flexible Container to Transport and
                          Manipulate Data and Associated Resources
  datapackage             Creating and Reading Data Packages
  datapasta               R Tools for Data Copy-Pasta
  dataprep                Efficient and Flexible Data Preprocessing Tools
  dataquieR               Data Quality in Epidemiological Research
  datardis                Data from the Doctor Who Series
  datareportR             Fast Data Summary Reports
  dataresqc               C3S Quality Control Tools for Historical
                          Climate Data
  datarium                Data Bank for Statistical Analysis and
                          Visualization
  datarobot               'DataRobot' Predictive Modeling API
  datasauRus              Datasets from the Datasaurus Dozen
  dataseries              Switzerland's Data Series in One Place
  dataset                 Create Data Frames for Exchange and Reuse
  datasetjson             Read and Write CDISC Dataset JSON Files
  datasets.load           Graphical Interface for Loading Datasets
  datasetsICR             Datasets from the Book "An Introduction to
                          Clustering with R"
  dataspice               Create Lightweight Schema.org Descriptions of
                          Data
  datastat                Dataset for Statistical Analysis
  datasusr                Fast Access to Brazilian Public Health Data
                          from 'DATASUS'
  dataverifyr             A Lightweight, Flexible, and Fast Data
                          Validation Package that Can Handle All Sizes of
                          Data
  dataverse               Client for Dataverse 4+ Repositories
  dataviewR               An Interactive and Feature-Rich Data Viewer
  datawizard              Easy Data Wrangling and Statistical
                          Transformations
  datazoom.amazonia       Simplify Access to Data from the Amazon Region
  datazoom.social         Simplify Access to Brazilian Social Data
  date                    Functions for Handling Dates
  date4ts                 Wrangle and Modify Ts Object with Classic
                          Frequencies and Exact Dates
  dateback                Collect and Install R Packages on a Specified
                          Date with Dependencies
  datefixR                Standardize Dates in Different Formats or with
                          Missing Data
  daterangepicker         Create a Shiny Date-Range Input
  datetime                Nominal Dates, Times, and Durations
  datetimeoffset          Datetimes with Optional UTC Offsets and/or
                          Heterogeneous Time Zones
  datetimeutils           Utilities for Dates and Times
  datetoiso               Convert and Impute Dates to ISO 8601 Format and
                          Reconcile Data Sets
  dateutils               Date Utils
  datoramar               Interface to the 'Datorama' API
  datos                   Traduce al Español Varios Conjuntos de Datos de
                          Práctica
  datplot                 Preparation of Object Dating Ranges for Density
                          Plots (Aoristic Analysis)
  datr                    'Dat' Protocol Interface
  datrProfile             Column Profile for Tables and Datasets
  dauR                    Datasets for "Sampling and Data Analysis Using
                          R: Theory and Practice"
  dauphin                 Compact Standard for Australian Phone Numbers
  dawaR                   An API Wrapper for 'DAWA' - 'The Danish Address
                          Web API'
  dawai                   Discriminant Analysis with Additional
                          Information
  daySupply               Calculating Days' Supply and Daily Dose of
                          Prescriptions
  daymetr                 Interface to the 'Daymet' Web Services
  days2lessons            Distributes Teachers Lessons On Days in a
                          Balanced Manner
  db2pq                   Export Database Tables to 'Parquet'
  dbGaPCheckup            dbGaP Checkup
  dbMC                    Confidence Interval for Matrix Completion via
                          De-Biased Estimator
  dbMatrix                Database-Backed Matrix Classes and Operations
  dbProject               Database Connection Management and Utilities
                          for 'dbverse'
  dbSpatial               Spatial Data Operations for Database-Backed
                          Geometries
  dbWebForms              Produce R Functions to Create HTML Forms Based
                          on SQL Meta Data
  dbacf                   Autocovariance Estimation via Difference-Based
                          Methods
  dbarts                  Discrete Bayesian Additive Regression Trees
                          Sampler
  dbd                     Discretised Beta Distribution
  dbglm                   Generalised Linear Models by Subsampling and
                          One-Step Polishing
  dbhydroR                'DBHYDRO' Hydrologic and Water Quality Data
  dbi.table               Database Queries Using 'data.table' Syntax
  dblcens                 Compute the NPMLE of Distribution Function from
                          Doubly Censored Data, Plus the Empirical
                          Likelihood Ratio for F(T)
  dbmss                   Distance-Based Measures of Spatial Structures
  dbnR                    Dynamic Bayesian Network Learning and Inference
  dbnlearn                Dynamic Bayesian Network Structure Learning,
                          Parameter Learning and Forecasting
  dbparser                Drugs Databases Parser
  dbplot                  Simplifies Plotting Data Inside Databases
  dbplyr                  A 'dplyr' Back End for Databases
  dbrobust                Robust Distance-Based Visualization and
                          Analysis of Mixed-Type Data
  dbscan                  Density-Based Spatial Clustering of
                          Applications with Noise (DBSCAN) and Related
                          Algorithms
  dbstats                 Distance-Based Statistics
  dbw                     Doubly Robust Distribution Balancing Weighting
                          Estimation
  dbx                     A Fast, Easy-to-Use Database Interface
  dc3net                  Inferring Condition-Specific Networks via
                          Differential Network Inference
  dcTensor                Discrete Matrix/Tensor Decomposition
  dcce                    Dynamic Common Correlated Effects Estimation
                          for Panel Data
  dccmidas                DCC Models with GARCH and GARCH-MIDAS
                          Specifications in the Univariate Step,
                          RiskMetrics, Moving Covariance and Scalar and
                          Diagonal BEKK Models
  dccpp                   Fast Computation of Distance Correlations
  dceasimR                Distributional Cost-Effectiveness Analysis for
                          Health Technology Assessment
  dci                     Calculate the Dendritic Connectivity Index in
                          River Networks
  dcifer                  Genetic Relatedness Between Polyclonal
                          Infections
  dclone                  Data Cloning and MCMC Tools for Maximum
                          Likelihood Methods
  dclust                  Divisive Hierarchical Clustering
  dcm2                    Calculating the M2 Model Fit Statistic for
                          Diagnostic Classification Models
  dcmdata                 Data Sets for Diagnostic Classification
                          Modeling
  dcmle                   Hierarchical Models Made Easy with Data Cloning
  dcmodify                Modify Data Using Externally Defined
                          Modification Rules
  dcmstan                 Generate 'Stan' Code for Diagnostic
                          Classification Models
  dcorBSS                 Distance-Correlation Based Methods for Blind
                          Source Separation and Dependence Analysis
  dcorVS                  Variable Selection Algorithms Using the
                          Distance Correlation
  dcortools               Providing Fast and Flexible Functions for
                          Distance Correlation Analysis
  dcov                    A Fast Implementation of Distance Covariance
  dcsvm                   Density Convoluted Support Vector Machines
  dcurver                 Utility Functions for Davidian Curves
  dcurves                 Decision Curve Analysis for Model Evaluation
  dcvar                   Dynamic Copula VAR Models for Time-Varying
                          Dependence
  ddModel                 The Decision Diffusion Model
  dda                     Direction Dependence Analysis
  ddalpha                 Depth-Based Classification and Calculation of
                          Data Depth
  ddc                     Distance Density Clustering Algorithm
  dde                     Solve Delay Differential Equations
  ddecompose              Detailed Distributional Decomposition
  ddi                     The Data Defect Index for Samples that May not
                          be IID
  ddiv                    Data Driven I-v Feature Extraction
  ddml                    Double/Debiased Machine Learning
  ddp                     Desirable Dietary Pattern
  ddpca                   Diagonally Dominant Principal Component
                          Analysis
  ddpcr                   Analysis and Visualization of Droplet Digital
                          PCR in R and on the Web
  ddplot                  Create D3 Based SVG Graphics
  ddsPLS                  Data-Driven Sparse Partial Least Squares
  ddst                    Data Driven Smooth Tests
  ddtlcm                  Latent Class Analysis with Dirichlet Diffusion
                          Tree Process Prior
  deBInfer                Bayesian Inference for Differential Equations
  deBif                   Bifurcation Analysis of Ordinary Differential
                          Equation Systems
  deFit                   Fitting Differential Equations to Time Series
                          Data
  deSolve                 Solvers for Initial Value Problems of
                          Differential Equations ('ODE', 'DAE', 'DDE')
  deTS                    Tissue-Specific Enrichment Analysis
  deaR                    Conventional and Fuzzy Data Envelopment
                          Analysis
  deadband                Statistical Deadband Algorithms Comparison
  deadwood                Outlier Detection via Trimming of Mutual
                          Reachability Minimum Spanning Trees
  deal                    Learning Bayesian Networks with Mixed Variables
  dearseq                 Differential Expression Analysis for RNA-seq
                          data through a robust variance component test
  debar                   A Post-Clustering Denoiser for COI-5P Barcode
                          Data
  debest                  Duration Estimation for Biomarker Enrichment
                          Studies and Trials
  debiasedTrialEmulation
                          Pipeline for Debiased Target Trial Emulation
  debkeepr                Analysis of Non-Decimal Currencies and
                          Double-Entry Bookkeeping
  debrief                 Text-Based Summaries for 'profvis' Profiling
                          Data
  debtkit                 Debt Sustainability Analysis and Fiscal Risk
                          Assessment
  debugme                 Debug R Packages
  debugr                  Debug Tool to Watch Objects/Expressions While
                          Running an R Script
  decido                  Bindings for 'Mapbox' Ear Cutting Triangulation
                          Library
  decision                Statistical Decision Analysis
  decisionSupport         Quantitative Support of Decision Making under
                          Uncertainty
  decisionpaths           Construct and Audit Longitudinal Decision Paths
  deckgl                  An R Interface to 'deck.gl'
  deckroadmap             Roadmap Footers for 'Reveal.js' Slides in
                          'Quarto' and 'R Markdown'
  declared                Functions for Declared Missing Values
  decode                  Differential Co-Expression and Differential
                          Expression Analysis
  decoder                 Decode Coded Variables to Plain Text and the
                          Other Way Around
  decompML                Decomposition Based Machine Learning Model
  decomposedPSF           Time Series Prediction with PSF and
                          Decomposition Methods (EMD and EEMD)
  decompositionLE         Provides Easy Methods to Perform Life
                          Expectancy Decomposition
  decompr                 Global Value Chain Decomposition
  decontam                Identify Contaminants in Marker-gene and
                          Metagenomics Sequencing Data
  deconvolveR             Empirical Bayes Estimation Strategies
  decor                   Retrieve Code Decorations
  decorators              Extend the Behaviour of a Function without
                          Explicitly Modifying it
  decorrelate             Decorrelation Projection Scalable to High
                          Dimensional Data
  decoupleR               decoupleR: Ensemble of computational methods to
                          infer biological activities from omics data
  decp                    Complete Change Point Analysis
  deducorrect             Deductive Correction, Deductive Imputation, and
                          Deterministic Correction
  deductive               Data Correction and Imputation Using Deductive
                          Methods
  deduped                 Making "Deduplicated" Functions
  dedupewider             Deduplication Across Multiple Columns
  deep                    A Neural Networks Framework
  deepImp                 Imputation with Deep Learning Methods
  deepMOU                 Clustering of Short Texts by Mixture of
                          Unigrams and Its Deep Extensions
  deepNN                  Deep Learning
  deepRstudio             Seamless Language Translation in 'RStudio'
                          using 'DeepL' API and 'Rstudioapi'
  deepSTRAPP              Test for Differences in Diversification Rates
                          over Time
  deepdep                 Visualise and Explore the Deep Dependencies of
                          R Packages
  deepgmm                 Deep Gaussian Mixture Models
  deepgp                  Bayesian Deep Gaussian Processes using MCMC
  deeplr                  Interface to the 'DeepL' Translation API
  deepnet                 Deep Learning Toolkit in R
  deepspat                Deep Compositional Spatial Models
  deeptime                Plotting Tools for Anyone Working in Deep Time
  deeptimedata            Geologic Pattern Data from FGDC Used in
                          'deeptime'
  default                 Change the Default Arguments in R Functions
  defineOptions           Define and Parse Command Line Options
  defineR                 Creates Define XML Documents
  deflateBR               Deflate Nominal Brazilian Reais
  deflist                 Deferred List - A Read-Only List-Like Object
                          with Deferred Access
  defm                    Estimation and Simulation of Multi-Binary
                          Response Models
  deforestable            Classify RGB Images into Forest or Non-Forest
  deform                  Spatial Deformation and Dimension Expansion
                          Gaussian Processes
  degday                  Compute Degree Days
  degradr                 Estimating Remaining Useful Life with Linear
                          Mixed Effects Models
  degreenet               Models for Skewed Count Distributions Relevant
                          to Networks
  degross                 Density Estimation from GROuped Summary
                          Statistics
  deident                 Persistent Data Anonymization Pipeline
  dejaVu                  Multiple Imputation for Recurrent Events
  delaydiscount           Fit Linearized Hyperbolic Model for Delay
                          Discounting Curves
  delayed                 A Framework for Parallelizing Dependent Tasks
  deldir                  Delaunay Triangulation and Dirichlet (Voronoi)
                          Tessellation
  deliberr                Methods for Deliberation Analysis
  delimtools              Helper Functions for Species Delimitation
                          Analysis
  delma                   Convert 'R Markdown' and 'Quarto' Documents to
                          Ecological Metadata Language
  deltaPlotR              Identification of Dichotomous Differential Item
                          Functioning (DIF) using Angoff's Delta Plot
                          Method
  deltaccd                Quantify Rhythmic Gene Co-Expression Relative
                          to a Reference
  deltapif                Estimate Potential Impact and Population
                          Attributable Fractions with Aggregated Data
  deltatest               Statistical Hypothesis Testing Using the Delta
                          Method
  dematel                 Decision Making Trial and Evaluation Laboratory
                          Technique in R
  deming                  Deming, Theil-Sen, Passing-Bablock and Total
                          Least Squares Regression
  demoKde                 Kernel Density Estimation for Demonstration
                          Purposes
  demoShiny               Runs a 'Shiny' App as Demo or Lists All Demo
                          'Shiny' Apps
  demodelr                Simulating Differential Equations with Data
  demofit                 Parametric Mortality Curve Fitting and
                          Mortality Forecasting Tools
  demogR                  Analysis of Age-Structured Demographic Models
  demography              Forecasting Mortality, Fertility, Migration and
                          Population Data
  demor                   Methods for Demographic Analysis
  demovuln                Demographic Vulnerability Metrics for Matrix
                          Population Models
  demulticoder            Simultaneous Analysis of Multiplexed
                          Metabarcodes
  dendRoAnalyst           A Tool for Processing and Analyzing Dendrometer
                          Data
  dendextend              Extending 'dendrogram' Functionality in R
  dendroNetwork           Create Networks of Dendrochronological Series
                          using Pairwise Similarity
  dendroTools             Linear and Nonlinear Methods for Analyzing
                          Daily and Monthly Dendroclimatological Data
  dendroextras            Extra Functions to Cut, Label and Colour
                          Dendrogram Clusters
  dendrometeR             Analyzing Dendrometer Data
  dendrometry             Forest Estimations and Dendrometric
                          Computations
  dendsort                Modular Leaf Ordering Methods for Dendrogram
                          Nodes
  denguedatahub           A Tidy Format Datasets of Dengue by Country
  denim                   Generate and Simulate Deterministic
                          Compartmental Models
  denoiSeq                Differential Expression Analysis Using a
                          Bottom-Up Model
  denovolyzeR             Statistical Analyses of De Novo Genetic
                          Variants
  densEstBayes            Density Estimation via Bayesian Inference
                          Engines
  denseFLMM               Functional Linear Mixed Models for Densely
                          Sampled Data
  densitr                 Analysing Density Profiles from Resistance
                          Drilling of Trees
  densityClust            Clustering by Fast Search and Find of Density
                          Peaks
  densityarea             Polygons of Bivariate Density Distributions
  densityratio            Distribution Comparison Through Density Ratio
                          Estimation
  densratio               Density Ratio Estimation
  denstest                Density Equality Testing
  denstrip                Density Strips and Other Methods for Compactly
                          Illustrating Distributions
  dentomedical            Publication-Ready Descriptive, Bivariate,
                          Regression, Correlation and Diagnostic Accuracy
                          Tools for Medical and Dental Data
  denvax                  Simple Dengue Test and Vaccinate Cost
                          Thresholds
  depCensoring            Statistical Methods for Survival Data with
                          Dependent Censoring
  depcache                Cache R Expressions, Taking Their Dependencies
                          into Account
  depcoeff                Dependency Coefficients
  depend.truncation       Statistical Methods for the Analysis of
                          Dependently Truncated Data
  dependentsimr           Simulate Omics-Scale Data with Dependency
  depmixS4                Dependent Mixture Models - Hidden Markov Models
                          of GLMs and Other Distributions in S4
  depower                 Power Analysis for Differential Expression
                          Studies
  deprivateR              Calculating and Analyzing Measures of
                          Deprivation in the United States
  deps                    Dependency Management with 'roxygen'-Style
                          Comments
  depth.plot              Multivariate Analogy of Quantiles
  depthTools              Depth Tools Package
  derivmkts               Functions and R Code to Accompany Derivatives
                          Markets
  desc                    Manipulate DESCRIPTION Files
  descomponer             Seasonal Adjustment by Frequency Analysis
  descr                   Descriptive Statistics
  describedata            Miscellaneous Descriptive Functions
  describer               Describe Data in R Using Common Descriptive
                          Statistics
  descriptio              Descriptive Statistical Analysis
  descriptr               Generate Descriptive Statistics
  descstat                Tools for Descriptive Statistics
  descstatsr              Descriptive Univariate Statistics
  descsuppR               Support Functions for (Reproducible)
                          Descriptive Statistics
  descsuppRplots          Generate Plots for All Variables in Descriptive
                          Tables
  desctable               Produce Descriptive and Comparative Tables
                          Easily
  descutils               Utilities for Describing and Comparing Data
  deseats                 Data-Driven Locally Weighted Regression for
                          Trend and Seasonality in TS
  desiR                   Desirability Functions for Ranking, Selecting,
                          and Integrating Data
  designer                'Shiny' UI Prototype Builder
  designit                Blocking and Randomization for Experimental
                          Design
  designmatch             Matched Samples that are Balanced and
                          Representative by Design
  designr                 Balanced Factorial Designs
  designsize              Sample Size Calculation of Various Study
                          Designs
  desirability            Function Optimization and Ranking via
                          Desirability Functions
  desirability2           Desirability Functions for Multiparameter
                          Optimization
  desk                    Didactic Econometrics Starter Kit
  desla                   Desparsified Lasso Inference for Time Series
  despair                 Motivational Quotes and Shakespearean Bard–bits
                          for Personal Projects
  desplot                 Plotting Field Plans for Agricultural
                          Experiments
  details                 Create Details HTML Tag for Markdown and
                          Package Documentation
  detect                  Analyzing Wildlife Data with Detection Error
  detectR                 Change Point Detection
  detectRUNS              Detect Runs of Homozygosity and Runs of
                          Heterozygosity in Diploid Genomes
  detectXOR               XOR Pattern Detection and Visualization
  detectnorm              Detect Nonnormality in Meta-Analysis without
                          Raw Data
  detector                Detect Data Containing Personally Identifiable
                          Information
  detectors               Prediction Data from GPT Detectors
  detectseparation        Detect and Check for Separation and Infinite
                          Maximum Likelihood Estimates
  detourr                 Portable and Performant Tour Animations
  detpack                 Density Estimation and Random Number Generation
                          with Distribution Element Trees
  detrendeR               A Graphical User Interface (GUI) to Visualize
                          and Analyze Dendrochronological Data
  detrendr                Detrend Images
  detzrcr                 Compare Detrital Zircon Suites
  devEMF                  EMF Graphics Output Device
  devFunc                 Clear and Condense Argument Check for
                          User-Defined Functions
  devRate                 Quantify the Relationship Between Development
                          Rate and Temperature in Ectotherms
  devianLM                Detecting Extremal Values in a Normal Linear
                          Model
  devoid                  A Graphic Device that Does Nothing
  devtools                Tools to Make Developing R Packages Easier
  dexisensitivity         'DEXi' Decision Tree Analysis and Visualization
  dexter                  Data Management and Analysis of Tests
  dextergui               A Graphical User Interface for Dexter
  df2yaml                 Convert Dataframe to 'YAML'
  dfCompare               Compare Two Dataframes and Return Adds,
                          Changes, and Deletes
  dfadjust                Degrees of Freedom Adjustment for Robust
                          Standard Errors
  dfcomb                  Phase I/II Adaptive Dose-Finding Design for
                          Combination Studies
  dfcrm                   Dose-Finding by the Continual Reassessment
                          Method
  dfeR                    Common Department for Education Analysis Tasks
  dfexpand                Automatically Expand Delimited Column Values
                          into Multiple Binary Columns with 'dfexpand'
  dfidx                   Indexed Data Frames
  dfmirroR                Simulate a Data Frame Mirroring an Input and
                          Produce Shareable Simulation Code
  dfms                    Dynamic Factor Models
  dfmta                   Phase I/II Adaptive Dose-Finding Design for MTA
  dfoliatR                Detection and Analysis of Insect Defoliation
                          Signals in Tree Rings
  dfoptim                 Derivative-Free Optimization
  dformula                Data Manipulation using Formula
  dfphase1                Phase I Control Charts (with Emphasis on
                          Distribution-Free Methods)
  dfr                     Dual Feature Reduction for SGL
  dfrr                    Dichotomized Functional Response Regression
  dfsaneacc               Accelerated Derivative-Free Method for
                          Large-Scale Nonlinear Systems of Equations
  dfvad                   Diewert and Fox's Method of Value Added Growth
                          Decomposition
  dga                     Capture-Recapture Estimation using Bayesian
                          Model Averaging
  dggridR                 Discrete Global Grids
  dglars                  Differential Geometric Least Angle Regression
  dglm                    Double Generalized Linear Models
  dgof                    Discrete Goodness-of-Fit Tests
  dgpsi                   Interface to 'dgpsi' for Deep and Linked
                          Gaussian Process Emulations
  dhga                    Differential Hub Gene Analysis
  dhglm                   Double Hierarchical Generalized Linear Models
  dhmeasures              Digital History Measures
  dhsage                  Reproductive Age Female Data of Various
                          Demographic Health Surveys
  di                      Deficit Index (DI)
  diagFDR                 Verifiable FDR Diagnostics for Proteomics
  diagL1                  Routines for Fit, Inference and Diagnostics in
                          Linear L1 and LAD Models
  diagcounts              Recover Diagnostic Test Accuracy Counts from
                          Reported Accuracy Measures
  diagis                  Diagnostic Plot and Multivariate Summary
                          Statistics of Weighted Samples from Importance
                          Sampling
  diagmeta                Meta-Analysis of Diagnostic Accuracy Studies
                          with Several Cutpoints
  diagonals               Block Diagonal Extraction or Replacement
  diagram                 Functions for Visualising Simple Graphs
                          (Networks), Plotting Flow Diagrams
  dialr                   Parse, Format, and Validate International Phone
                          Numbers
  dialrjars               Required 'libphonenumber' jars for the 'dialr'
                          Package
  dials                   Tools for Creating Tuning Parameter Values
  diaplt                  Beads Summary Plot of Ranges
  diario                  'R' Interface to the 'Diariodeobras'
                          Application
  diathor                 Calculate Ecological Information and Diatom
                          Based Indices
  dibble                  Dimensional Data Frames
  dice                    Calculate probabilities of various dice-rolling
                          events
  diceR                   Diverse Cluster Ensemble in R
  diceplot                High Dimensional Categorical Data Visualization
  dichromat               Color Schemes for Dichromats
  dictionaRy              Retrieve the Dictionary Definitions of English
                          Words
  did                     Treatment Effects with Multiple Periods and
                          Groups
  did2s                   Two-Stage Difference-in-Differences Following
                          Gardner (2021)
  didec                   Directed Dependence Coefficient
  didimputation           Imputation Estimator from Borusyak, Jaravel,
                          and Spiess (2021)
  didrooRFM               Compute Recency Frequency Monetary Scores for
                          your Customer Data
  diegr                   Dynamic and Interactive EEG Graphics
  diemr                   Genome Polarization via Diagnostic Index
                          Expectation Maximization
  dietr                   Diet Estimated Trophic Levels
  diezeit                 R Interface to the ZEIT ONLINE Content API
  difNLR                  DIF and DDF Detection by Non-Linear Regression
                          Models
  difR                    Collection of Methods to Detect Dichotomous,
                          Polytomous, and Continuous Differential Item
                          Functioning (DIF)
  difconet                Differential Coexpressed Networks
  diffEnrich              Given a List of Gene Symbols, Performs
                          Differential Enrichment Analysis
  diffHic                 Differential Analysis of Hi-C Data
  diffIRT                 Diffusion IRT Models for Response and Response
                          Time Data
  diffMeshGP              Multi-Fidelity Computer Experiments Using the
                          Tuo-Wu-Yu Model
  diffcor                 Fisher's z-Tests Concerning Differences Between
                          Correlations
  diffcp                  Differentiating Through Cone Programs
  diffdf                  Dataframe Difference Tool
  diffdfs                 Compute the Difference Between Data Frames
  diffeR                  Metrics of Difference for Comparing Pairs of
                          Maps or Pairs of Variables
  diffeqr                 Solving Differential Equations (ODEs, SDEs,
                          DDEs, DAEs)
  diffmatchpatch          String Diff, Match, and Patch Utilities
  diffobj                 Diffs for R Objects
  diffpriv                Easy Differential Privacy
  diffr                   Display Differences Between Two Files using
                          Codediff Library
  diffusion               Forecast the Diffusion of New Products
  diffusionMap            Diffusion Map
  diffval                 Vegetation Patterns
  diffviewer              HTML Widget to Show File Differences
  digest                  Create Compact Hash Digests of R Objects
  digiNORM                Data-Driven Digital PCR Normalization
  digiRhythm              Analyzing Animal's Rhythmicity
  digitTests              Tests for Detecting Irregular Digit Patterns
  digitalPCR              Estimate Copy Number for Digital PCR
  dilp                    Reconstruct Paleoclimate and Paleoecology with
                          Leaf Physiognomy
  dimRed                  A Framework for Dimensionality Reduction
  dimensio                Multivariate Data Analysis
  dimensionsR             Gathering Bibliographic Records from 'Digital
                          Science Dimensions' Using 'DSL' API
  dina                    Bayesian Estimation of DINA Model
  dinamic                 A Method to Analyze Recurrent DNA Copy Number
                          Aberrations in Tumors
  dineR                   Differential Network Estimation in R
  dineq                   Decomposition of (Income) Inequality
  dint                    A Toolkit for Year-Quarter, Year-Month and
                          Year-Isoweek Dates
  dipm                    Depth Importance in Precision Medicine (DIPM)
                          Method
  dipsaus                 A Dipping Sauce for Data Analysis and
                          Visualizations
  diptest                 Hartigan's Dip Test Statistic for Unimodality -
                          Corrected
  dipw                    Debiased Inverse Propensity Score Weighting
  dir.expiry              Managing Expiration for Cache Directories
  dir2json                Convert Directory to JSON
  directAgeStd            Direct Age Standardisation with Confidence
                          Intervals
  directPA                Direction Analysis for Pathways and Kinases
  directadjusting         Directly Adjusted Estimates
  directlabels            Direct Labels for Multicolor Plots
  dirichletprocess        Build Dirichlet Process Objects for Bayesian
                          Modelling
  dirmult                 Estimation in Dirichlet-Multinomial
                          Distribution
  disagg2                 Support Functions for Time Series Analysis Book
  disaggR                 Two-Steps Benchmarks for Time Series
                          Disaggregation
  disaggregation          Disaggregation Modelling
  disagmethod             Autoregressive Integrated Moving Average
                          (ARIMA) Based Disaggregation Methods
  disastr.api             Wrapper for the UN OCHA ReliefWeb Disaster
                          Events API
  disbayes                Bayesian Multi-State Modelling of Chronic
                          Disease Burden Data
  discAUC                 Linear and Non-Linear AUC for Discounting Data
  discFA                  Discrete Factor Analysis
  discSurv                Discrete Time Survival Analysis
  discfrail               Cox Models for Time-to-Event Data with
                          Nonparametric Discrete Group-Specific Frailties
  discharge               Fourier Analysis of Discharge Data
  disclap                 Discrete Laplace Exponential Family
  disclapmix              Discrete Laplace Mixture Inference using the EM
                          Algorithm
  disclapmix2             Mixtures of Discrete Laplace Distributions
                          using Numerical Optimisation
  disclosuR               Text Conversion from Nexis Uni PDFs to R Data
                          Frames
  discnorm                Test for Discretized Normality in Ordinal Data
  discoCVI                Implementation of the DISCO Metric for Internal
                          Clustering Evaluation
  discord                 Functions for Discordant Kinship Modeling
  discourseGT             Analyze Group Patterns using Graph Theory in
                          Educational Settings
  discoveR                Exploratory Data Analysis System
  discoverableresearch    Checks Title, Abstract and Keywords to Optimise
                          Discoverability
  discovr                 Interactive Tutorials and Data for "Discovering
                          Statistics Using R and RStudio"
  discretefit             Simulated Goodness-of-Fit Tests for Discrete
                          Distributions
  discretes               Discrete Numeric Series
  discretization          Data Preprocessing, Discretization for
                          Classification
  discrim                 Model Wrappers for Discriminant Analysis
  discrtr                 A Companion Package for the Book "Discrete
                          Choice Analysis with 'R'"
  discursive              Measuring Discursive Sophistication in
                          Open-Ended Survey Responses
  disdat                  Data for Comparing Species Distribution
                          Modeling Methods
  diseasemapping          Modelling Spatial Variation in Disease Risk for
                          Areal Data
  diseasystore            Feature Stores for the 'diseasy' Framework
  dismo                   Species Distribution Modeling
  disordR                 Non-Ordered Vectors
  dispRity                Measuring Disparity
  dispeRse                Simulation of Demic Diffusion with
                          Environmental Constraints
  dispersionIndicators    Indicators for the Analysis of Dispersion of
                          Datasets with Batched and Ordered Samples
  displease               Numeric and Color Sequences with Non-Linear
                          Interpolation
  dispmod                 Modelling Dispersion in GLM
  disposables             Create Disposable R Packages for Testing
  dispositionEffect       Analysis of Disposition Effect on Financial
                          Portfolios
  disprofas               Non-Parametric Dissolution Profile Analysis
  dissCqN                 Multiple Assemblage Dissimilarity for Orders q
                          = 0-N
  dissever                Spatial Downscaling using the Dissever
                          Algorithm
  dissimilarities         Creating, Manipulating, and Subsetting "dist"
                          Objects
  dist.structure          Structured Random Variables for Reliability
                          System Distributions
  distTails               A Collection of Full Defined Distribution Tails
  distanceHD              Distance Metrics for High-Dimensional
                          Clustering
  distances               Tools for Distance Metrics
  distanceto              Calculate Distance to Features
  distantia               Advanced Toolset for Efficient Time Series
                          Dissimilarity Analysis
  distcomp                Computations over Distributed Data without
                          Aggregation
  distcrete               Discrete Distribution Approximations
  distdichoR              Distributional Method for the Dichotomisation
                          of Continuous Outcomes
  distfree.cr             Distribution-Free Confidence Region
  distfreereg             Distribution-Free Goodness-of-Fit Testing for
                          Regression
  distfromq               Reconstruct a Distribution from a Collection of
                          Quantiles
  distill                 'R Markdown' Format for Scientific and
                          Technical Writing
  distilleR               A Wrap Around the 'DistillerSR' APIs
  distillery              Method Functions for Confidence Intervals and
                          to Distill Information from an Object
  distinctiveness         Distinctiveness Centrality
  distionary              Create and Evaluate Probability Distributions
  distops                 Usual Operations for Distance Matrices in R
  distory                 Distance Between Phylogenetic Histories
  distplyr                Manipulate and Combine Probability
                          Distributions
  distr                   Object Oriented Implementation of Distributions
  distrDoc                Documentation for 'distr' Family of R Packages
  distrEllipse            S4 Classes for Elliptically Contoured
                          Distributions
  distrEx                 Extensions of Package 'distr'
  distrMod                Object Oriented Implementation of Probability
                          Models
  distrRmetrics           Distribution Classes for Distributions from
                          Rmetrics
  distrSim                Simulation Classes Based on Package 'distr'
  distrTEst               Estimation and Testing Classes Based on Package
                          'distr'
  distrTeach              Extensions of Package 'distr' for Teaching
                          Stochastics/Statistics in Secondary School
  distributional          Vectorised Probability Distributions
  distributions3          Probability Distributions as S3 Objects
  distributionsrd         Distribution Fitting and Evaluation
  distro                  Linux Distribution Properties
  distrom                 Distributed Multinomial Regression
  distrr                  Estimate and Manage Empirical Distributions
  disttools               Distance Object Manipulation Tools
  dittoSeq                User Friendly Single-Cell and Bulk RNA
                          Sequencing Visualization
  dittoViz                User Friendly Data Visualization
  dittodb                 A Test Environment for Database Requests
  ditwahLandslide         Early Warning Information on Landslides in Sri
                          Lanka During the Ditwah Storm
  divDyn                  Diversity Dynamics using Fossil Sampling Data
  diveMove                Dive Analysis and Calibration
  diveR                   Easily Install and Load Interactive Data
                          Visualization Tools
  divent                  Entropy Partitioning to Measure Diversity
  diverge                 Evolutionary Trait Divergence Between Sister
                          Species and Other Paired Lineages
  diversitree             Comparative 'Phylogenetic' Analyses of
                          Diversification
  diversityArch           Computes Diversity Indices for Archaeological
                          Data
  diversityForest         Innovative Complex Split Procedures in Random
                          Forests Through Candidate Split Sampling
  divest                  Get Images Out of DICOM Format Quickly
  divo                    Tools for Analysis of Diversity and Similarity
                          in Biological Systems
  divraster               Diversity Metrics Calculations for Rasterized
                          Data
  divseg                  Calculate Diversity and Segregation Indices
  divvy                   Spatial Subsampling of Biodiversity Occurrence
                          Data
  dixon                   Nearest Neighbour Contingency Table Analysis
  dixonTest               Dixon's Ratio Test for Outlier Detection
  diyar                   Record Linkage and Epidemiological Case
                          Definitions in 'R'
  dkanr                   Client for the 'DKAN' API
  dlib                    Allow Access to the 'Dlib' C++ Library
  dlim                    Distributed Lag Interaction Model
  dlm                     Bayesian and Likelihood Analysis of Dynamic
                          Linear Models
  dlmtree                 Bayesian Treed Distributed Lag Models
  dlmwwbe                 Dynamic Linear Model for Wastewater-Based
                          Epidemiology
  dlnm                    Distributed Lag Non-Linear Models
  dlookr                  Tools for Data Diagnosis, Exploration,
                          Transformation
  dlr                     Download and Cache Files Safely
  dlsem                   Distributed-Lag Linear Structural Equation
                          Models
  dlstats                 Download Stats of R Packages
  dm                      Relational Data Models
  dma                     Dynamic Model Averaging
  dmai                    Divisia Monetary Aggregates Index
  dmbc                    Model Based Clustering of Binary Dissimilarity
                          Measurements
  dmetatools              Computational Tools for Meta-Analysis of
                          Diagnostic Accuracy Test
  dml                     Distance Metric Learning in R
  dmm                     Dyadic Mixed Model for Pedigree Data
  dmtools                 Tools for Clinical Data Management
  dmutate                 Mutate Data Frames with Random Variates
  dnafractal              Generates a Fractal Image of a DNA Sequence
  dndR                    Dungeons & Dragons Functions for Players and
                          Dungeon Masters
  dng                     Distributions and Gradients
  dnn                     Deep Neural Network Tools for Probability and
                          Statistic Models
  dnr                     Simulate Dynamic Networks using Exponential
                          Random Graph Models (ERGM) Family
  do                      Data Operator
  do3PCA                  Probabilistic Phylogenetic Principal Component
                          Analysis
  doBy                    Groupwise Statistics, LSmeans, Linear
                          Estimates, Utilities
  doFuture                Use Foreach to Parallelize via the Future
                          Framework
  doMC                    Foreach Parallel Adaptor for 'parallel'
  doMPI                   Foreach Parallel Adaptor for the Rmpi Package
  doParabar               'foreach' Parallel Adapter for 'parabar'
                          Backends
  doParallel              Foreach Parallel Adaptor for the 'parallel'
                          Package
  doRNG                   Generic Reproducible Parallel Backend for
                          'foreach' Loops
  doRedis                 'Foreach' Parallel Adapter Using the 'Redis'
                          Database
  doSNOW                  Foreach Parallel Adaptor for the 'snow' Package
  dobin                   Dimension Reduction for Outlier Detection
  dobson                  Data from the GLM Book by Dobson and Barnett
  doc2concrete            Measuring Concreteness in Natural Language
  doc2vec                 Distributed Representations of Sentences,
                          Documents and Topics
  dockViewR               Layout Manager Widget for R and 'shiny' Apps
  dockerfiler             Easy Dockerfile Creation from R
  docket                  Insert R Data into 'Word' Documents
  docknitr                Use Docker Images to Process Rmarkdown Blocks
  doclisting              List Functions in Documentation
  doconv                  Document Conversion to 'PDF', Thumbnails and
                          Visual Testing
  docopt                  Command-Line Interface Specification Language
  docopulae               Optimal Designs for Copula Models
  docorator               Docorate (Decorate + Output) Displays
  docore                  Utility Functions for Scientific Coding
  docstring               Provides Docstring Capabilities to R Functions
  doctest                 Generate Tests from Examples Using 'roxygen'
                          and 'testthat'
  document                Run 'roxygen2' on (Chunks of) Single Code Files
  documenter              Documents Files
  documentosbr            Validate Brazilian Administrative Registers -
                          Valida Documentos
  docxtractr              Extract Data Tables and Comments from
                          'Microsoft' 'Word' Documents
  dodgr                   Distances on Directed Graphs
  doebioresearch          Analysis of Design of Experiments for
                          Biological Research
  dogesr                  Work with the Doges/Dogaresse Dataset
  dominanceanalysis       Dominance Analysis
  domino                  R Console Bindings for the 'Domino Command-Line
                          Client'
  domir                   Dominance Analysis Methods
  donut                   Nearest Neighbour Search with Variables on a
                          Torus
  donutsk                 Construct Advanced Donut Charts
  doofa                   Designs for Order-of-Addition Experiments
  doolkit                 Exploration of Dental Surface Topography
  door                    Analysis of Clinical Trials with the
                          Desirability of Outcome Ranking Methodology
  dormancy                Detection and Analysis of Dormant Patterns in
                          Data
  doseSens                Conduct Sensitivity Analysis with Continuous
                          Exposures and Binary or Continuous Outcomes
  dosearch                Causal Effect Identification from Multiple
                          Incomplete Data Sources
  dosedesignR             Interactive Designing of Dose Finding Studies
  dosresmeta              Multivariate Dose-Response Meta-Analysis
  dostats                 Compute Statistics Helper Functions
  dotCall64               Enhanced Foreign Function Interface Supporting
                          Long Vectors
  dotenv                  Load Environment Variables from '.env'
  dotgen                  Gene-Set Analysis via Decorrelation by
                          Orthogonal Transformation
  dotprofile              Create and Manage Configuration Profiles
  dots                    Dot Density Maps
  dotsViolin              Dot Plots Mimicking Violin Plots
  dotty                   The Unpacking Dot Operator
  dotwhisker              Dot-and-Whisker Plots of Regression Results
  doubcens                Survivor Function Estimation for Doubly
                          Interval-Censored Failure Time Data
  double.truncation       Analysis of Doubly-Truncated Data
  doubt                   Enable Operators Containing the '?' Symbol
  douconca                Double Constrained Correspondence Analysis for
                          Trait-Environment Analysis in Ecology
  doudpackage             Create Elegant Table 1 in HTML for
                          Bio-Statistics
  downlit                 Syntax Highlighting and Automatic Linking
  downloader              Download Files over HTTP and HTTPS
  downloadthis            Implement Download Buttons in 'rmarkdown'
  downscale               Downscaling Species Occupancy
  downsize                A Tool to Downsize Large Analysis Projects for
                          Testing
  dowser                  B Cell Receptor Phylogenetics Toolkit
  dpGMM                   Dynamic Programming Based Gaussian Mixture
                          Modelling Tool for 1D and 2D Data
  dparser                 Port of 'Dparser' Package
  dpasurv                 Dynamic Path Analysis of Survival Data via
                          Aalen's Additive Hazards Model
  dpcR                    Digital PCR Analysis
  dpcc                    Dynamic Programming for Convex Clustering
  dpcid                   Differential Partial Correlation IDentification
  dpdr                    Interface to Health Canada Drug Product
                          Database API
  dpkg                    Create, Stow, and Read Data Packages
  dplR                    Dendrochronology Program Library in R
  dplyr                   A Grammar of Data Manipulation
  dplyrAssist             RStudio Addin for Teaching and Learning Data
                          Manipulation Using 'dplyr'
  dpm                     Dynamic Panel Models Fit with Maximum
                          Likelihood
  dppca                   Differentially Private Principal Component
                          Analysis Visualization
  dppmix                  Determinantal Point Process Mixture Models
  dprop                   Computation of Some Important Distributional
                          Properties
  dpseg                   Piecewise Linear Segmentation by Dynamic
                          Programming
  dqcheckr                Automated Data Quality Checks for Recurring
                          Dataset Deliveries
  dqrng                   Fast Pseudo Random Number Generators
  dr                      Methods for Dimension Reduction for Regression
  dr4pl                   Dose Response Data Analysis using the 4
                          Parameter Logistic (4pl) Model
  drMAIC                  Doubly Robust Matching-Adjusted Indirect
                          Comparison for HTA
  dracor                  Decode Draco Format 3D Mesh Data
  dragonking              Statistical Tools to Identify Dragon Kings
  dragracer               Data Sets for RuPaul's Drag Race
  dragulaR                Drag and Drop Elements in 'Shiny' using
                          'Dragula Javascript Library'
  drake                   A Pipeline Toolkit for Reproducible Computation
                          at Scale
  drape                   Doubly Robust Average Partial Effects
  drat                    'Drat' R Archive Template
  drawer                  An Interactive HTML Image Editing Tool
  drawsample              Draw Samples with the Desired Properties from a
                          Data Set
  drc                     Analysis of Dose-Response Curves
  drcSeedGerm             Utilities for Data Analyses in Seed
                          Germination/Emergence Assays
  drcarlate               Improving Estimation Efficiency in CAR with
                          Imperfect Compliance
  drclust                 Simultaneous Clustering and (or) Dimensionality
                          Reduction
  drcte                   Statistical Approaches for Time-to-Event Data
                          in Agriculture
  drda                    Dose-Response Data Analysis
  dream                   Dynamic Relational Event Analysis and Modeling
  dreamer                 Dose Response Models for Bayesian Model
                          Averaging
  dreamerr                Error Handling Made Easy
  drf                     Distributional Random Forests
  drgee                   Doubly Robust Generalized Estimating Equations
  drglm                   Fitting Linear and Generalized Linear Models in
                          "Divide and Recombine" Approach to Large Data
                          Sets
  drhur                   Learning R with Dr. Hu
  drhutools               Political Science Academic Research Gears
  drifter                 Concept Drift and Concept Shift Detection for
                          Predictive Models
  drimmR                  Estimation, Simulation and Reliability of
                          Drifting Markov Models
  driveR                  Prioritizing Cancer Driver Genes Using Genomics
                          Data
  drmeta                  Design-Robust Meta-Analysis via
                          Variance-Function Models
  drogonR                 High-Performance HTTP Server for R via 'Drogon'
  droll                   Analyze Roll Distributions
  drone                   Data for Data Visualisation Geometries
                          Encyclopedia
  dropR                   Dropout Analysis by Condition
  dropout                 Handling Incomplete Responses in Survey Data
                          Analysis
  droptest                Simulates LOX Drop Testing
  drord                   Doubly-Robust Estimators for Ordinal Outcomes
  drought                 Statistical Modeling and Assessment of Drought
  drpop                   Efficient and Doubly Robust Population Size
                          Estimation
  drrglm                  Doubly Regularized Matrix-Variate Regression
  drtmle                  Doubly-Robust Nonparametric Estimation and
                          Inference
  drugDemand              Drug Demand Forecasting
  drugdevelopR            Utility-Based Optimal Phase II/III Drug
                          Development Planning
  drugsens                Automated Analysis of 'QuPath' Output Data and
                          Metadata Extraction
  drumr                   Turn R into a Drum Machine
  ds                      Descriptive Statistics
  ds4psy                  Data Science for Psychologists
  dsBase                  'DataSHIELD' Server Side Base Functions
  dsBaseClient            'DataSHIELD' Client Side Base Functions
  dsROCrate               'DataSHIELD' RO-Crate Governance Functions
  dsTidyverse             'DataSHIELD' 'Tidyverse' Server-Side Package
  dsTidyverseClient       'DataSHIELD' 'Tidyverse' Clientside Package
  dsa                     Seasonal Adjustment of Daily Time Series
  dsample                 Discretization-Based Direct Random Sample
                          Generation
  dsb                     Normalize & Denoise Droplet Single Cell Protein
                          Data (CITE-Seq)
  dscore                  D-Score for Child Development
  dscoreMSM               Survival Proximity Score Matching in
                          Multi-State Survival Model
  dsem                    Dynamic Structural Equation Models
  dsge                    Dynamic Stochastic General Equilibrium Models
  dsims                   Distance Sampling Simulations
  dslabs                  Data Science Labs
  dslice                  Dynamic Slicing
  dsm                     Density Surface Modelling of Distance Sampling
                          Data
  dsmmR                   Estimation and Simulation of Drifting
                          Semi-Markov Models
  dsos                    Dataset Shift with Outlier Scores
  dsp                     Dynamic Shrinkage Process and Change Point
                          Detection
  dspline                 Tools for Computations with Discrete Splines
  dsrTest                 Tests and Confidence Intervals on Directly
                          Standardized Rates for Several Methods
  dssd                    Distance Sampling Survey Design
  dst                     Using the Theory of Belief Functions
  dstabledist             The Discrete Stable Distribution Functions
  dstat                   Conditional Sensitivity Analysis for Matched
                          Observational Studies
  dstat2x2xk              Demonstrated Insensitivity to Bias in 2x2xK
                          Contingency Tables
  dtComb                  Statistical Combination of Diagnostic Tests
  dtGAP                   Supervised Generalized Association Plots Based
                          on Decision Trees
  dtangle                 Cell Type Deconvolution from Gene Expressions
  dtaudit                 Audit and Diagnostic Tools for 'data.table'
                          Workflows
  dtgiw                   Discrete Transmuted Generalized Inverse Weibull
                          Distribution
  dti                     Analysis of Diffusion Weighted Imaging (DWI)
                          Data
  dtlg                    A Performance-Focused Package for Clinical
                          Trial Tables
  dtlscores               Scrape Deutsche Turnliga Archive
  dtmapi                  Fetching Data from the 'Displacement Tracking
                          Matrix'
  dtms                    Discrete-Time Multistate Models
  dtp                     Dynamic Panel Threshold Model
  dtpcrm                  Dose Transition Pathways for Continual
                          Reassessment Method
  dtplyr                  Data Table Back-End for 'dplyr'
  dtrSurv                 Dynamic Treatment Regimes for Survival Analysis
  dtrackr                 Track your Data Pipelines
  dtreg                   Interact with Data Type Registries and Create
                          Machine-Readable Data
  dtsmartr                Interactive Virtualized Data Explorer Grid
                          Widget
  dtt                     Discrete Trigonometric Transforms
  dttr2                   Manipulate Date, POSIXct and hms Vectors
  dtts                    'data.table' Time-Series
  dtw                     Dynamic Time Warping Algorithms
  dtwclust                Time Series Clustering Along with Optimizations
                          for the Dynamic Time Warping Distance
  dual                    Automatic Differentiation with Dual Numbers
  dualScale               Dual Scaling Analysis of Data
  dualtrees               Decimated and Undecimated 2D Complex Dual-Tree
                          Wavelet Transform
  duawranglr              Securely Wrangle Dataset According to Data
                          Usage Agreement
  dub                     Unpacking Assignment for Lists via Pattern
                          Matching
  duckdb                  DBI Package for the DuckDB Database Management
                          System
  duckdbfs                High Performance Remote File System, Database
                          and 'Geospatial' Access Using 'duckdb'
  duckduckr               Simple Client for the DuckDuckGo Instant Answer
                          API
  duckh3                  H3 Extension of 'DuckDB'
  duckplyr                A 'DuckDB'-Backed Version of 'dplyr'
  duckspatial             R Interface to 'DuckDB' Database with Spatial
                          Extension
  duet                    Analysing Non-Verbal Communication in Dyadic
                          Interactions from Video Data
  dumbbell                Displaying Changes Between Two Points Using
                          Dumbbell Plots
  dummy                   Automatic Creation of Dummies with Support for
                          Predictive Modeling
  dundermifflin           The Office Quotes on-Demand
  dunlin                  Preprocessing Tools for Clinical Trial Data
  dunn.test               Dunn's Test of Multiple Comparisons Using Rank
                          Sums
  dupNodes                Computes DNSLbetweenness, a Betweenness Measure
                          that Includes Self-Loops
  dupiR                   Bayesian Inference from Count Data using
                          Discrete Uniform Priors
  dupree                  Identify Duplicated R Code in a Project
  dverse                  Document a Universe of Packages
  dvir                    Disaster Victim Identification
  dwctaxon                Edit and Validate Darwin Core Taxon Data
  dwdradar                Read Binary Radar Files from 'DWD' (German
                          Weather Service)
  dwlm                    Doubly Weighted Linear Model
  dwp                     Density-Weighted Proportion
  dySEM                   Dyadic Structural Equation Modeling
  dyadicMarkov            Pattern Identification for Dyadic Sequences
                          Using Transition Matrices
  dyads                   Dyadic Network Analysis
  dycdtools               Calibration Assistant and Post-Processing Tool
                          for Aquatic Ecosystem Model DYRESM-CAEDYM
  dydea                   Detection of Chaotic and Regular Intervals in
                          the Data
  dygraphs                Interface to 'Dygraphs' Interactive Time Series
                          Charting Library
  dymo                    Dynamic Mode Decomposition Forecasting with
                          Conformal Predictive Sampling
  dyn                     Time Series Regression
  dynBiplotGUI            Full Interactive GUI for Dynamic Biplot in R
  dynConfiR               Dynamic Models for Confidence and Response Time
                          Distributions
  dynCorr                 Dynamic Correlation Package
  dynRB                   Dynamic Range Boxes
  dynaSpec                Dynamic Spectrogram Visualizations
  dynaTree                Dynamic Trees for Learning and Design
  dynafluxr               Retrieve Reaction Rate Dynamics from Metabolite
                          Concentration Time Courses
  dynamac                 Dynamic Simulation and Testing for
                          Single-Equation ARDL Models
  dynamicSDM              Species Distribution and Abundance Modelling at
                          High Spatio-Temporal Resolution
  dynamicTreeCut          Methods for Detection of Clusters in
                          Hierarchical Clustering Dendrograms
  dynamicpv               Evaluates Present Values and Health Economic
                          Models with Dynamic Pricing and Uptake
  dynamite                Bayesian Modeling and Causal Inference for
                          Multivariate Longitudinal Data
  dynasim                 Dynamics Similarity Coefficient
  dynatop                 An Implementation of Dynamic TOPMODEL
                          Hydrological Model in R
  dynatopGIS              Algorithms for Helping Build Dynamic TOPMODEL
                          Implementations from Spatial Data
  dyndimred               Dimensionality Reduction Methods in a Common
                          Format
  dynemu                  Emulation of Dynamic Simulators via
                          One-Step-Ahead Approach
  dynetNLAResistance      Resisting Neighbor Label Attack in a Dynamic
                          Network
  dyngen                  A Multi-Modal Simulator for Spearheading
                          Single-Cell Omics Analyses
  dynlm                   Dynamic Linear Regression
  dynmix                  Estimation of Dynamic Finite Mixtures
  dynpanel                Dynamic Panel Data Models
  dynparam                Creating Meta-Information for Parameters
  dynr                    Dynamic Models with Regime-Switching
  dynsbm                  Dynamic Stochastic Block Models
  dynsim                  Dynamic Simulations of Autoregressive
                          Relationships
  dynsurv                 Dynamic Models for Survival Data
  dyntaper                Dynamic Stem Profile Models, AKA Tree Taper
                          Equations
  dynutils                Common Functionality for the 'dynverse'
                          Packages
  dynwrap                 Representing and Inferring Single-Cell
                          Trajectories
  e1071                   Misc Functions of the Department of Statistics,
                          Probability Theory Group (Formerly: E1071), TU
                          Wien
  e2tree                  Explainable Ensemble Trees
  eAnalytics              Dynamic Web-Based Analytics for the Energy
                          Industry
  eBsc                    "Empirical Bayes Smoothing Splines with
                          Correlated Errors"
  eCAR                    Eigenvalue CAR Models
  eCV                     Enhanced Coefficient of Variation and IDR
                          Extensions for Reproducibility Assessment
  eCerto                  Statistical Tests for the Production of
                          Reference Materials
  eChem                   Simulations for Electrochemistry Experiments
  eClosure                Methods Based on the e-Closure Principle
  eDITH                   Model Transport of Environmental DNA in River
                          Networks
  eDMA                    Dynamic Model Averaging with Grid Search
  eDNAfuns                Working with Metabarcoding Data in a Tidy
                          Format
  eDNAjoint               Joint Modeling of Traditional and Environmental
                          DNA Survey Data in a Bayesian Framework
  eFCM                    Exponential Factor Copula Model
  eFRED                   Fetch Data from the Federal Reserve Economic
                          Database
  eGST                    Leveraging eQTLs to Identify Individual-Level
                          Tissue of Interest for a Complex Trait
  eHDPrep                 Quality Control and Semantic Enrichment of
                          Datasets
  eLNNpairedCov           Model-Based Gene Selection for Paired Data
  eList                   List Comprehension and Tools
  eNchange                Ensemble Methods for Multiple Change-Point
                          Detection
  ePCR                    Ensemble Penalized Cox Regression for Survival
                          Prediction
  eRTG3D                  Empirically Informed Random Trajectory
                          Generation in 3-D
  eRm                     Extended Rasch Modeling
  eSDM                    Ensemble Tool for Predictions from Species
                          Distribution Models
  eSIR                    Extended State-Space SIR Models
  eVCGsampler             VCG Sampling using Energy-Based Covariate
                          Balancing
  eadrm                   Fitting Dose-Response Models Using an
                          Evolutionary Algorithm
  eaf                     Plots of the Empirical Attainment Function
  eam                     Evidence Accumulation Models
  earlyR                  Estimation of Transmissibility in the Early
                          Stages of a Disease Outbreak
  earlygating             Properties of Bayesian Early Gating Designs
  earth                   Multivariate Adaptive Regression Splines
  earthUI                 Interactive 'shiny' GUI for the 'earth' Package
  earthdatalogin          NASA 'EarthData' Access Utilities
  earthtide               Parallel Implementation of 'ETERNA 3.40' for
                          Prediction and Analysis of Earth Tides
  earthtones              Derive a Color Palette from a Particular
                          Location on Earth
  easy.glmnet             Functions to Simplify the Use of 'glmnet' for
                          Machine Learning
  easy.utils              Frequently Used Functions for Easy R
                          Programming
  easyAHP                 Analytic Hierarchy Process (AHP)
  easyCODA                Compositional Data Analysis in Practice
  easyComment             Generate Comment Boxes with Custom Alignment
  easyDes                 An Easy Way to Descriptive Analysis
  easyEWAS                Perform and Visualize EWAS Analysis
  easyLSEA                Lipid Set Enrichment Analysis with Dual KS and
                          'fgsea' Engines
  easyNCDF                Tools to Easily Read/Write NetCDF Files
                          into/from Multidimensional R Arrays
  easyORtables            Easy Odds Ratio Tables
  easyPSID                Reading, Formatting, and Organizing the Panel
                          Study of Income Dynamics (PSID)
  easyPubMed              Search and Retrieve Scientific Publication
                          Records from PubMed
  easyRasch2              Psychometric Analysis with Rasch Measurement
                          Theory
  easyRaschBayes          Bayesian Rasch Analysis Using 'brms'
  easyRef                 Easy Reference Generation for R Packages
  easySVG                 An Easy SVG Basic Elements Generator
  easyScieloPack          Easy Interface to Search 'SciELO' Database
  easySdcTable            Easy Interface to the Statistical Disclosure
                          Control Package 'sdcTable' Extended with Own
                          Implementation of 'GaussSuppression'
  easyVerification        Ensemble Forecast Verification for Large Data
                          Sets
  easyViz                 Easy Visualization of Conditional Effects from
                          Regression Models
  easyalluvial            Generate Alluvial Plots with a Single Line of
                          Code
  easyanova               Analysis of Variance and Other Important
                          Complementary Analyses
  easybgm                 Extracting and Visualizing Bayesian Graphical
                          Models
  easybio                 Comprehensive Single-Cell Annotation and
                          Transcriptomic Analysis Toolkit
  easycensus              Quickly Find, Extract, and Marginalize U.S.
                          Census Tables
  easyclimate             Easy Access to High-Resolution Daily Climate
                          Data for Europe
  easydb                  Easily Connect to Common Types of Databases
  easylabel               Interactive Scatter Plot and Volcano Plot
                          Labels
  easynem                 Nematode Community Analysis
  easynls                 Easy Nonlinear Model
  easypackages            Easy Loading and Installing of Packages
  easypower               Sample Size Estimation for Experimental Designs
  easyr                   Helpful Functions from Oliver Wyman Actuarial
                          Consulting
  easyreg                 Easy Regression
  easystats               Framework for Easy Statistical Modeling,
                          Visualization, and Reporting
  easysurv                Simplify Survival Data Analysis and Model
                          Fitting
  easytable               Create Multi-Format Regression Tables
  eat                     Efficiency Analysis Trees
  eatATA                  Create Constraints for Small Test Assembly
                          Problems
  eatDB                   Spreadsheet Interface for Relational Databases
  eatGADS                 Data Management of Large Hierarchical Data
  eatRep                  Educational Assessment Tools for Replication
                          Methods
  eatTools                Miscellaneous Functions for the Analysis of
                          Educational Assessments
  ebGenotyping            Genotyping and SNP Detection using Next
                          Generation Sequencing Data
  ebTobit                 Empirical Bayesian Tobit Matrix Estimation
  eba                     Elimination-by-Aspects Models
  ebal                    Entropy Reweighting to Create Balanced Samples
  ebci                    Robust Empirical Bayes Confidence Intervals
  ebdbNet                 Empirical Bayes Estimation of Dynamic Bayesian
                          Networks
  ebdm                    Estimating Bivariate Dependency from Marginal
                          Data
  ebirdst                 Access and Analyze eBird Status and Trends Data
                          Products
  ebm                     Explainable Boosting Machines
  ebmc                    Ensemble-Based Methods for Class Imbalance
                          Problem
  ebmstate                Empirical Bayes Multi-State Cox Model
  ebnm                    Solve the Empirical Bayes Normal Means Problem
  ebrahim.gof             Ebrahim-Farrington Goodness-of-Fit Test for
                          Logistic Regression
  ebvcube                 Working with netCDF for Essential Biodiversity
                          Variables
  ebx                     'Earth Blox' API Client
  ec50estimator           An Automated Way to Estimate EC50 for
                          Stratified Datasets
  ecan                    Ecological Analysis and Visualization
  ecb                     Programmatic Access to the European Central
                          Bank's Data Portal
  ecce                    Translate English Sentence into Chinese, or
                          Translate Chinese Sentence into English
  ecdfHT                  Empirical CDF for Heavy Tailed Data
  ecespa                  Functions for Spatial Point Pattern Analysis
  echarts4r               Create Interactive Graphs with 'Echarts
                          JavaScript' Version 6
  echarty                 Minimal R/Shiny Interface to JavaScript Library
                          'ECharts'
  echelon                 The Echelon Analysis and the Detection of
                          Spatial Clusters using Echelon Scan Method
  echo                    Echo Code Evaluations
  echo.find               Finding Rhythms Using Extended Circadian
                          Harmonic Oscillators (ECHO)
  echogram                Echogram Visualisation and Analysis
  echoice2                Choice Models with Economic Foundation
  echor                   Access EPA 'ECHO' Data
  echos                   Echo State Networks for Time Series Modeling
                          and Forecasting
  ecic                    Extended Changes-in-Changes
  ecipex                  Efficient Calculation of Fine Structure Isotope
                          Patterns via Fourier Transforms of
                          Simplex-Based Elemental Models
  eclipseplot             Graphical Visualizations for ROBUST-RCT Risk of
                          Bias Assessments
  ecm                     Build Error Correction Models
  ecmwfr                  Interface to 'ECMWF' and 'CDS' Data Web
                          Services
  eco                     Ecological Inference in 2x2 Tables
  ecoCopula               Graphical Modelling and Ordination using
                          Copulas
  ecoTolerance            Ecological Tolerance Indices
  ecoXCorr                Lagged Cross-Correlation Analysis of
                          Environmental Time Series
  ecocbo                  Calculating Optimum Sampling Effort in
                          Community Ecology
  ecochange               Integrating Ecosystem Remote Sensing Products
                          to Derive EBV Indicators
  ecocomDP                Tools to Create, Use, and Convert ecocomDP Data
  ecode                   Ordinary Differential Equation Systems in
                          Ecology
  ecodist                 Dissimilarity-Based Functions for Ecological
                          Analysis
  ecodive                 Parallel and Memory-Efficient Ecological
                          Diversity Metrics
  ecolMod                 "A Practical Guide to Ecological Modelling -
                          Using R as a Simulation Platform"
  ecolRxC                 Ecological Inference of RxC Tables by Latent
                          Structure Approaches
  ecolTest                Community Ecology Tests
  ecolottery              Coalescent-Based Simulation of Ecological
                          Communities
  econdatasets            Easily Download 'EconDataverse' Datasets
  econdataverse           Easily Load and Install the 'EconDataverse'
  econet                  Estimation of Parameter-Dependent Network
                          Centrality Measures
  econid                  Economic Entity Identifier Standardization
  economiccomplexity      Computational Methods for Economic Complexity
  econtools               Enrich and Analyze Sovereign-Level Economic
                          Data
  econullnetr             Null Model Analysis for Ecological Networks
  ecopower                Power Estimates and Equivalence Testing for
                          Multivariate Data
  ecoreg                  Ecological Regression using Aggregate and
                          Individual Data
  ecoregime               Analysis of Ecological Dynamic Regimes
  ecorest                 Conducts Analyses Informing Ecosystem
                          Restoration Decisions
  ecorisk                 Risk Assessments for Ecosystems or Ecosystem
                          Components
  ecos                    Economic Statistics System of the Bank of Korea
  ecosim                  Toolbox for Aquatic Ecosystem Modeling
  ecospace                Simulating Community Assembly and Ecological
                          Diversification Using Ecospace Frameworks
  ecospat                 Spatial Ecology Miscellaneous Methods
  ecostate                State-Space Mass-Balance Model for Marine
                          Ecosystems
  ecostats                Code and Data Accompanying the Eco-Stats Text
                          (Warton 2022)
  ecostatscale            Statistical Scaling Functions for Ecological
                          Systems
  ecoteach                Educational Datasets for Ecology and
                          Agriculture
  ecotourism              Collection of Data on Wildlife Sightings,
                          Tourism Counts, and Weather from Australia
  ecotox                  Analysis of Ecotoxicology
  ecotoxicology           Methods for Ecotoxicology
  ecotraj                 Ecological Trajectory Analysis
  ecotrends               Temporal Trends in Ecological Niche Models
  ecoval                  Procedures for Ecological Assessment of Surface
                          Waters
  ecp                     Non-Parametric Multiple Change-Point Analysis
                          of Multivariate Data
  ecpdist                 Extended Chen-Poisson Lifetime Distribution
  ecr                     Evolutionary Computation in R
  ectotemp                Quantitative Estimates of Small Ectotherm
                          Temperature Regulation Effectiveness
  ed50                    Estimate ED50 and Its Confidence Interval
  ed50simulation          Estimate ED50 and Its Confidence Interval
  eda4treeR               Experimental Design and Analysis for Tree
                          Improvement
  edar                    Convenient Functions for Exploratory Data
                          Analysis
  edcpR                   Ecological Data Collection and Processing
                          Package
  eddington               Compute a Cyclist's Eddington Number
  edeaR                   Exploratory and Descriptive Event-Based Data
                          Analysis
  edecob                  Event Detection Using Confidence Bounds
  edf                     Read Data from European Data Format (EDF and
                          EDF+) Files
  edfReader               Reading EDF(+) and BDF(+) Files
  edfinr                  Access Tidy Education Finance Data
  edgar                   Tool for the U.S. SEC EDGAR Retrieval and
                          Parsing of Corporate Filings
  edgarWebR               SEC Filings Access
  edgarfundamentals       Retrieve Fundamental Financial Data from SEC
                          'EDGAR'
  edgeCorr                Spatial Edge Correction
  edgeR                   Empirical Analysis of Digital Gene Expression
                          Data in R
  edgebundle              Algorithms for Bundling Edges in Networks and
                          Visualizing Flow and Metro Maps
  edgebundleR             Circle Plot with Bundled Edges
  edgedata                Datasets that Support the EDGE Server DIY Logic
  edgemodelr              Local Large Language Model Inference Engine
  edibble                 Encapsulating Elements of Experimental Design
  ediblecity              Modeling Urban Agriculture at City Scale
  edina                   Bayesian Estimation of an Exploratory
                          Deterministic Input, Noisy and Gate Model
  editData                'RStudio' Addin for Editing a 'data.frame'
  editbl                  'DT' Extension for CRUD (Create, Read, Update,
                          Delete) Applications in 'shiny'
  editrules               Parsing, Applying, and Manipulating Data
                          Cleaning Rules
  edl                     Toolbox for Error-Driven Learning Simulations
                          with Two-Layer Networks
  edlibR                  R Integration for Edlib, the C/C++ Library for
                          Exact Pairwise Sequence Alignment using Edit
                          (Levenshtein) Distance
  edmdata                 Data Sets for Psychometric Modeling
  edstan                  Stan Models for Item Response Theory
  educabR                 Download and Process Brazilian Education Data
                          from INEP
  educationR              A Comprehensive Collection of Educational
                          Datasets
  educationdata           Retrieve Records from the Urban Institute's
                          Education Data Portal API
  educineq                Compute and Decompose Inequality in Education
  edwards97               Langmuir Semi-Empirical Coagulation Model
  eefAnalytics            Robust Analytical Methods for Evaluating
                          Educational Interventions using Randomised
                          Controlled Trials Designs
  eegkit                  Toolkit for Electroencephalography Data
  eegkitdata              Electroencephalography Toolkit Datasets
  eemR                    Tools for Pre-Processing
                          Emission-Excitation-Matrix (EEM) Fluorescence
                          Data
  eemdARIMA               EEMD Based Auto Regressive Integrated Moving
                          Average Model
  eemdTDNN                EEMD and Its Variant Based Time Delay Neural
                          Network Model
  eeptools                Convenience Functions for Education Data
  ef                      Modelling Framework for the Estimation of
                          Salmonid Abundance
  efdm                    Simulate Forest Resources with the European
                          Forestry Dynamics Model
  eff2                    Efficient Least Squares for Total Causal
                          Effects
  effClust                Calculate Effective Number of Clusters for a
                          Linear Model
  effectcheck             Statistical Consistency Checker for Published
                          Research Results
  effectplots             Effect Plots
  effects                 Effect Displays for Linear, Generalized Linear,
                          and Other Models
  effectsize              Indices of Effect Size
  effectsizescr           Indices for Single-Case Research
  effsize                 Efficient Effect Size Computation
  ega                     Error Grid Analysis
  egg                     Extensions for 'ggplot2': Custom Geom, Custom
                          Themes, Plot Alignment, Labelled Panels,
                          Symmetric Scales, and Fixed Panel Size
  eglhmm                  Extended Generalised Linear Hidden Markov
                          Models
  egnyte                  Read and Write Files from 'Egnyte'
  egor                    Import and Analyse Ego-Centered Network Data
  eha                     Event History Analysis
  ehaGoF                  Calculates Goodness of Fit Statistics
  ehelp                   Enhanced Help to Enable "Docstring"-Comments in
                          Users Functions
  ehymet                  Methodologies for Functional Data Based on the
                          Epigraph and Hypograph Indices
  ei                      Ecological Inference
  ei.Datasets             Real Datasets for Assessing Ecological
                          Inference Algorithms
  eiCircles               Ecological Inference of RxC Tables by
                          Overdispersed-Multinomial Models
  eiExpand                Utilities for Expanding Functionality of
                          'eiCompare'
  eiIT                    Ecological Inference via Information Theory
  eiPack                  Ecological Inference and Higher-Dimension Data
                          Management
  eia                     API Wrapper for U.S. Energy Information
                          Administration ('EIA') Open Data
  eicm                    Explicit Interaction Community Models
  eigenmodel              Semiparametric Factor and Regression Models for
                          Symmetric Relational Data
  eikosograms             Visualizing Probabilities, Frequencies, and
                          Conditional Independence for Categorical
                          Variates
  eimpute                 Efficiently Impute Large Scale Incomplete
                          Matrix
  einops                  Flexible, Powerful, and Readable Tensor
                          Operations
  einsum                  Einstein Summation
  eiopaR                  Access to RFR (Risk-Free Rate) Curves Produced
                          by the EIOPA
  eiopt2                  Ecological Inference for RxC Tables via
                          Nonlinear Quadratic Optimization
  eirm                    Explanatory Item Response Modeling for
                          Dichotomous and Polytomous Items
  eive                    An Algorithm for Reducing Errors-in-Variable
                          Bias in Simple and Multiple Linear Regressions
  eixport                 Export Emissions to Atmospheric Models
  eks                     Tidy and Geospatial Kernel Smoothing
  elaborator              A 'shiny' Application for Exploring Laboratory
                          Data
  elasdics                Elastic Analysis of Sparse, Dense and Irregular
                          Curves
  elasso                  Enhanced Least Absolute Shrinkage and Selection
                          Operator Regression Model
  elastes                 Elastic Full Procrustes Means for Sparse and
                          Irregular Planar Curves
  elastic                 Database Interface to 'Elasticsearch' and
                          'OpenSearch'
  elasticnet              Elastic-Net for Sparse Estimation and Sparse
                          PCA
  elcf4R                  Electricity Load Curves Forecasting at
                          Individual Level
  elect                   Estimation of Life Expectancies Using
                          Multi-State Models
  elections               USA Presidential Elections Data
  electionsBR             R Functions to Download and Clean Brazilian
                          Electoral Data
  electivity              Algorithms for Electivity Indices
  electoral               Allocating Seats Methods and Party System
                          Scores
  elevatr                 Access Elevation Data from Various APIs
  elexr                   Load Associated Press Election Results with
                          Elex
  elfDistr                Kumaraswamy Complementary Weibull Geometric
                          (Kw-CWG) Probability Distribution
  elfgen                  Ecological Limit Function Model Generation and
                          Analysis Toolkit
  elgbd                   Empirical Likelihood for General Block Designs
  elhmc                   Sampling from a Empirical Likelihood Bayesian
                          Posterior of Parameters Using Hamiltonian Monte
                          Carlo
  elisr                   Exploratory Likert Scaling
  elitism                 Equipment for Logarithmic and Linear Time
                          Stepwise Multiple Hypothesis Testing
  elixir                  Transmutation of Languages
  elliplot                Ellipse Summary Plot of Quantiles
  ellipse                 Functions for Drawing Ellipses and Ellipse-Like
                          Confidence Regions
  ellipsis                Tools for Working with ...
  elliptic                Weierstrass and Jacobi Elliptic Functions
  ellipticalsymmetry      Elliptical Symmetry Tests
  ellmer                  Chat with Large Language Models
  elmNNRcpp               The Extreme Learning Machine Algorithm
  elo                     Ranking Teams by Elo Rating and Comparable
                          Methods
  elrm                    Exact Logistic Regression via MCMC
  elsa                    Entropy-Based Local Indicator of Spatial
                          Association
  eltr                    Utilise Catastrophe Model Event Loss Table
                          Outputs
  emBALVI                 EM Bayesian Adaptive LASSO Variational
                          Inference Based GWAS
  emBayes                 Robust Bayesian Variable Selection via
                          Expectation-Maximization
  emIRT                   EM Algorithms for Estimating Item Response
                          Theory Models
  emailjsr                'emailjs' Support
  emailvalidation         Client for the 'emailalvalidation.io' E-Mail
                          Validation API
  emayili                 Send Email Messages
  embed                   Extra Recipes for Encoding Predictors
  embryogrowth            Tools to Analyze the Thermal Reaction Norm of
                          Embryo Growth
  emburden                Energy Burden Analysis Using Net Energy Return
                          Methodology
  emcAdr                  Evolutionary Version of the Metropolis-Hastings
                          Algorithm
  emdbook                 Support Functions and Data for "Ecological
                          Models and Data"
  emdi                    Estimating and Mapping Disaggregated Indicators
  emdist                  Earth Mover's Distance
  ememax                  Estimation for Binary Emax Models with Missing
                          Responses and Bias Reduction
  emery                   Accuracy Statistic Estimation for Imperfect
                          Gold Standards
  emf                     Ecosystem Multifunctionality: Richness,
                          Divergence, and Regularity
  emg                     Exponentially Modified Gaussian (EMG)
                          Distribution
  emhawkes                Exponential Multivariate Hawkes Model
  emld                    Ecological Metadata as Linked Data
  emln                    Organize, Handle, and Explore Ecological
                          Multilayer Networks
  emmeans                 Estimated Marginal Means, aka Least-Squares
                          Means
  emoa                    Evolutionary Multiobjective Optimization
                          Algorithms
  emodnet.wfs             Access 'EMODnet' Web Feature Service Data
  emoji                   Data and Function to Work with Emojis
  emojifont               Emoji and Font Awesome in Graphics
  emon                    Tools for Environmental and Ecological Survey
                          Design
  emov                    Eye Movement Analysis Package for Fixation and
                          Saccade Detection
  emphatic                Exploratory Analysis of Tabular Data using
                          Colour Highlighting
  empichar                Evaluates the Empirical Characteristic Function
                          for Multivariate Samples
  emplik                  Empirical Likelihood Ratio for
                          Censored/Truncated Data
  emplik2                 Empirical Likelihood Ratio Test for Two-Sample
                          U-Statistics with Censored Data
  emplikAUC               Empirical Likelihood Ratio Test/Confidence
                          Interval for AUC or pAUC
  emplikCS                Empirical Likelihood with Current Status Data
                          for Mean, Probability, Hazard
  emreliability           Test Reliability and CSEM in Educational
                          Measurement
  ems                     Epimed Solutions Collection for Data Editing,
                          Analysis, and Benchmark of Health Units
  emstreeR                Tools for Fast Computing and Visualizing
                          Euclidean Minimum Spanning Trees
  emuR                    Main Package of the EMU Speech Database
                          Management System
  emulator                Bayesian Emulation of Computer Programs
  enaho                   Encuesta Nacional de Hogares (Peruvian Home
                          National Survey)
  encharter               Enhanced Office Open XML Charting for
                          'openxlsx2'
  encode                  Represent Ordered Lists and Pairs as Strings
  encryptedRmd            Encrypt Html Reports Using 'Libsodium'
  encryptr                Easily Encrypt and Decrypt Data Frame/Tibble
                          Columns or Files using RSA Public/Private Keys
  enderecobr              Padronizador de Endereços Brasileiros
                          (Brazilian Addresses Standardizer)
  endogeneity             Recursive Two-Stage Models to Address
                          Endogeneity
  endorse                 Bayesian Measurement Models for Analyzing
                          Endorsement Experiments
  endtoend                Transmissions and Receptions in an End to End
                          Network
  energy                  E-Statistics: Multivariate Inference via the
                          Energy of Data
  energyGOF               Goodness-of-Fit Tests for Univariate Data via
                          Energy
  energymethod            Two-Sample Test of many Functional Means using
                          the Energy Method
  energyr                 Data Published by the United States Federal
                          Energy Regulatory Commission
  enerscape               Compute Energy Landscapes
  enetLTS                 Robust and Sparse Methods for High Dimensional
                          Linear and Binary and Multinomial Regression
  english                 Translate Integers into English
  engression              Engression Modelling
  enhancer                Mixed-Effects Models Enhancing Functions
  enmSdmX                 Species Distribution Modeling and Ecological
                          Niche Modeling
  enmpa                   Ecological Niche Modeling using
                          Presence-Absence Data
  enpls                   Ensemble Partial Least Squares Regression
  enrichR                 Provides an R Interface to 'Enrichr'
  enrichit                'C++' Implementations of Functional Enrichment
                          Analysis
  enrichplot              Visualization of Functional Enrichment Result
  enrichwith              Methods to Enrich R Objects with Extra
                          Components
  ensModelVis             Visualisations for Model Ensembles
  ensembleBMA             Probabilistic Forecasting using Ensembles and
                          Bayesian Model Averaging
  ensembleML              Unified Interface for Ensemble Machine Learning
                          Methods
  ensembleMOS             Ensemble Model Output Statistics
  ensembleTax             Ensemble Taxonomic Assignments of Amplicon
                          Sequencing Data
  ensemblepp              Ensemble Postprocessing Data Sets
  enshuman                Human Gene Annotation Data from 'Ensembl'
  ensr                    Elastic Net SearcheR
  entropart               Entropy Partitioning to Measure Diversity
  entropy                 Estimation of Entropy, Mutual Information and
                          Related Quantities
  entrymodels             Estimate Entry Models
  envDocument             Document the R Working Environment
  envalysis               Miscellaneous Functions for Environmental
                          Analyses
  enveomics.R             Various Utilities for Microbial Genomics and
                          Metagenomics
  envi                    Environmental Interpolation using Spatial
                          Kernel Density Estimation
  enviGCMS                GC/LC-MS Data Analysis for Environmental
                          Science
  enviPat                 Isotope Pattern, Profile and Centroid
                          Calculation for Mass Spectrometry
  envir                   Manage R Environments Better
  envirem                 Generation of ENVIREM Variables
  envnames                Keep Track of User-Defined Environment Names
  envoutliers             Methods for Identification of Outliers in
                          Environmental Data
  envsetup                Support the Setup of the R Environment for
                          Clinical Trial Programming Workflows
  envstat                 Configurable Reporting on your External Compute
                          Environment
  envvar                  Make Working with Environment Variables Easier
                          and More Consistent
  eoR                     Data Management Package (Exposure and
                          Occurrence Data in R)
  eoa3                    Wildlife Mortality Estimator for Low Fatality
                          Rates and Imperfect Detection
  eodhdR2                 Official R API for Fetching Data from 'EODHD'
  eoffice                 Export or Graph and Tables to 'Microsoft'
                          Office and Import Figures and Tables
  epade                   Easy Plots
  epandist                Statistical Functions for the Censored and
                          Uncensored Epanechnikov Distribution
  epanet2toolkit          Call 'EPANET' Functions to Simulate Pipe
                          Networks
  epanetReader            Read Epanet Files into R
  epca                    Exploratory Principal Component Analysis
  epe4md                  EPE's 4MD Model to Forecast the Adoption of
                          Distributed Generation
  eph                     Argentina's Permanent Household Survey Data and
                          Manipulation Utilities
  epiCo                   Statistical and Viz Tools for Vector-Borne
                          Diseases in Colombia
  epiDeaths               Functions for Calculating Mortality Indicators
  epiDisplay              Epidemiological Data Display Package
  epiR                    Tools for the Analysis of Epidemiological Data
  epibasix                Elementary Epidemiological Functions for
                          Epidemiology and Biostatistics
  epicR                   Evaluation Platform in Chronic Obstructive
                          Pulmonary Disease
  epicasting              Ewnet: An Ensemble Wavelet Neural Network for
                          Forecasting and Epicasting
  epichains               Simulating and Analysing Transmission Chain
                          Statistics Using Branching Process Models
  epicmodel               Causal Modeling in Epidemiology
  epicontacts             Handling, Visualisation and Analysis of
                          Epidemiological Contacts
  epidata                 Tools to Retrieve Economic Policy Institute
                          Data Library Extracts
  epidatr                 Client for Delphi's 'Epidata' API
  epidict                 Epidemiology Data Dictionaries and Random Data
                          Generators
  epidm                   UK Epidemiological Data Management
  epifitter               Analysis and Simulation of Plant Disease
                          Progress Curves
  epiflows                Predicting Disease Spread from Flow Data
  epigraphdb              Interface Package for the 'EpiGraphDB' Platform
  epigrowthfit            Nonlinear Mixed Effects Models of Epidemic
                          Growth
  epikit                  Miscellaneous Helper Tools for Epidemiologists
  epilogi                 The 'epilogi' Variable Selection Algorithm for
                          Continuous Data
  epimdr                  Functions and Data for "Epidemics: Models and
                          Data in R"
  epimdr2                 Functions and Data for "Epidemics: Models and
                          Data in R (2nd Edition)"
  epinet                  Epidemic/Network-Related Tools
  epinetr                 Epistatic Network Modelling with Forward-Time
                          Simulation
  epiomics                Analysis of Omics Data in Observational Studies
  epiparameter            Classes and Helper Functions for Working with
                          Epidemiological Parameters
  epiparameterDB          Database of Epidemiological Parameters
  epiphy                  Analysis of Plant Disease Epidemics
  episensr                Basic Sensitivity Analysis of Epidemiological
                          Results
  episomer                Early Detection of Public Health Threats from
                          Social Media Data
  epitab                  Flexible Contingency Tables for Epidemiology
  epitabulate             Tables for Epidemiological Analysis
  epitools                Epidemiology Tools
  epitraxr                Manipulate 'EpiTrax' Data and Generate Reports
  epitrix                 Small Helpers and Tricks for Epidemics Analysis
  epiviz                  Data Visualisation Functions for
                          Epidemiological Data Science Products
  epiworldR               Fast Agent-Based Epi Models
  epiworldRShiny          A 'shiny' Wrapper of the R Package 'epiworldR'
  epiworldRcalibrate      Fast and Effortless Calibration of Agent-Based
                          Models using Machine Learning
  epizootic               Spatially Explicit Population Models of Disease
                          Transmission in Wildlife
  eplusr                  A Toolkit for Using Whole Building Simulation
                          Program 'EnergyPlus'
  eply                    Apply a Function Over Expressions
  epm                     EcoPhyloMapper
  epmfd                   Exploratory and Person/Item Misfit Diagnostics
                          for Polytomous Data
  epmrob                  Robust Estimation of Probit Models with
                          Endogeneity
  epo                     Enhanced Portfolio Optimization (EPO)
  epocakir                Clinical Coding of Patients with Kidney Disease
  eponge                  Keep Your Environment Clean
  epos                    Epilepsy Ontologies' Similarities
  epoxy                   String Interpolation for Documents, Reports and
                          Apps
  eppoFindeR              Interface to the EPPO Database and Public APIs
  epr                     Easy Polynomial Regression
  epsiwal                 Exact Post Selection Inference with
                          Applications to the Lasso
  epts                    Educational Platform Trials Simulator
  epubr                   Read EPUB File Metadata and Text
  epxToR                  Import 'Epidata' XML Files '.epx'
  eq5d                    Methods for Analysing 'EQ-5D' Data and
                          Calculating 'EQ-5D' Index Scores
  eq5dsuite               Handling and Analysing EQ-5d Data
  eqtesting               Equivalence Testing Functions
  equalCovs               Testing the Equality of Two Covariance Matrices
  equatags                Equations to 'XML'
  equate                  Observed-Score Linking and Equating
  equateIRT               IRT Equating Methods
  equateMultiple          Equating of Multiple Forms
  equatiomatic            Transform Models into 'LaTeX' Equations
  equiBSPD                Equivalent Estimation Balanced Split Plot
                          Designs
  equil2                  Calculate Urinary Saturation with the EQUIL2
                          Algorithm
  equivUMP                Uniformly Most Powerful Invariant Tests of
                          Equivalence
  equivalence             Provides Tests and Graphics for Assessing Tests
                          of Equivalence
  equivalenceTest         Equivalence Test for the Means of Two Normal
                          Distributions
  era                     Year-Based Time Scales
  erah                    Automated Spectral Deconvolution, Alignment,
                          and Metabolite Identification in GC/MS-Based
                          Untargeted Metabolomics
  eratosthenes            Archaeological Synchronism
  erboost                 Nonparametric Multiple Expectile Regression via
                          ER-Boost
  ercv                    Fitting Tails by the Empirical Residual
                          Coefficient of Variation
  erer                    Empirical Research in Economics with R
  ergMargins              Process Analysis for Exponential Random Graph
                          Models
  ergm                    Fit, Simulate and Diagnose Exponential-Family
                          Models for Networks
  ergm.count              Fit, Simulate and Diagnose Exponential-Family
                          Models for Networks with Count Edges
  ergm.ego                Fit, Simulate and Diagnose Exponential-Family
                          Random Graph Models to Egocentrically Sampled
                          Network Data
  ergm.multi              Fit, Simulate and Diagnose Exponential-Family
                          Models for Multiple or Multilayer Networks
  ergm.rank               Fit, Simulate and Diagnose Exponential-Family
                          Models for Rank-Order Relational Data
  ergm.sign               Exponential-Family Models for Signed Networks
  ergmclust               Exponential-Family Random Graph Models for
                          Network Clustering
  ergmgp                  Tools for Modeling ERGM Generating Processes
  ergmharris              Local Health Department network data set
  ergmito                 Exponential Random Graph Models for Small
                          Networks
  erify                   Check Arguments and Generate Readable Error
                          Messages
  ern                     Effective Reproduction Number Estimation
  ernm                    Exponential-Family Random Network Models
  errorist                Automatically Search Errors or Warnings
  errorlocate             Locate Errors with Validation Rules
  errors                  Uncertainty Propagation for R Vectors
  errum                   Exploratory Reduced Reparameterized Unified
                          Model Estimation
  ervissexplore           Retrieve and Explore ERVISS Respiratory Virus
                          Surveillance Data
  es.dif                  Compute Effect Sizes of the Difference
  esDesign                Adaptive Enrichment Designs with Sample Size
                          Re-Estimation
  esaddle                 Extended Empirical Saddlepoint Density
                          Approximations
  esaps                   Indicators of Electoral Systems and Party
                          Systems
  esback                  Expected Shortfall Backtesting
  esc                     Effect Size Computation for Meta Analysis
  escalation              A Modular Approach to Dose-Finding Clinical
                          Trials
  esci                    Estimation Statistics with Confidence Intervals
  eseis                   Environmental Seismology Toolbox
  eselect                 Adaptive Clinical Trial Designs with Endpoint
                          Selection and Sample Size Reassessment
  esem                    Exploratory Structural Equation Modeling ESEM
  esemifar                Smoothing Long-Memory Time Series
  eshrink                 Shrinkage for Effect Estimation
  esmisc                  Misc Functions of Eduard Szöcs
  esmprep                 Data Preparation During and After the Use of
                          the Experience Sampling Methodology (ESM)
  esmtools                Preprocessing Experience Sampling Method (ESM)
                          Data
  espadon                 Easy Study of Patient DICOM Data in Oncology
  esquisse                Explore and Visualize Your Data Interactively
  esreg                   Joint Quantile and Expected Shortfall
                          Regression
  ess                     Efficient Stepwise Selection in Decomposable
                          Models
  essHist                 The Essential Histogram
  essentialstools         Datasets and Utilities for Essentials of
                          Statistics for the Behavioral Sciences
  essurvey                Download Data from the European Social Survey
                          on the Fly
  estadistica             Fundamentos de estadística descriptiva e
                          inferencial
  estar                   Ecological Stability Metrics
  estatapi                R Interface to e-Stat API
  estats                  Fast and Light-Weight Energy Statistics
  estimability            Tools for Assessing Estimability of Linear
                          Predictions
  estimateW               Estimation of Spatial Weight Matrices
  estimators              Parameter Estimation
  estimatr                Fast Estimators for Design-Based Inference
  estimraw                Estimation of Four-Fold Table Cell Frequencies
                          (Raw Data) from Effect Size Measures
  estmeansd               Estimating the Sample Mean and Standard
                          Deviation from Commonly Reported Quantiles in
                          Meta-Analysis
  estprod                 Estimation of Production Functions
  esviz