Error(s) in re-building vignettes:
  ...
--- re-building ‘advanced-modeling.qmd’ using html
Warning in file(open = "w+b") :
  cannot open file '/tmp/RtmpTpmfM9/Rf78c382b0017e6': No space left on device
Error: processing vignette 'advanced-modeling.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `file()`:
! cannot open the connection
--- failed re-building ‘advanced-modeling.qmd’

--- re-building ‘getting-started.qmd’ using html
[31m

processing file: getting-started.qmd
[39m[31mError in `plot.epiworld_diagram()`:
! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects. Please install it using install.packages('DiagrammeR').
Backtrace:
    ▆
 1. ├─base::plot(diagram)
 2. └─epiworldR:::plot.epiworld_diagram(diagram)
[39m[31m
Quitting from getting-started.qmd:107-110 [mermaid-diagram]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~[39m[31m~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.epiworld_diagram()`:
! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects. Please install it using install.packages('DiagrammeR').
---
Backtrace:
    ▆
 1. ├─base::plot(diagram)
 2. └─epiworldR:::plot.epiworld_diagram(diagram)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Execution halted
[39m[33mWARN: Error encountered when rendering files[39m
Error: processing vignette 'getting-started.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
  -----------------------------
  
  
  processing file: getting-started.qmd
  [31mError in `plot.epiworld_diagram()`:[39m
  ! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects.
  Please install it using install.packages('DiagrammeR').
  Backtrace:
  ▆
  1. ├─base::plot(diagram)
  2. └─epiworldR:::plot.epiworld_diagram(diagram)
  
  Quitting from getting-started.qmd:107-110 [mermaid-diagram]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~[31m~~~~~~~~~~~~~~~~~~~[39m
  <error/rlang_error>
  Error in `plot.epiworld_diagram()`:
  ! The 'DiagrammeR' package is required to plot 'epiworld_diagram' objects.
  Please install it using install.packages('DiagrammeR').
  ---
  Backtrace:
  ▆
  1. ├─base::plot(diagram)
  2. └─epiworldR:::plot.epiworld_diagram(diagram)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Execution halted
  [33mWARN: Error encountered when rendering files[39m
  
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘getting-started.qmd’

--- re-building ‘implementation.qmd’ using html
[1mpandoc [22m
  to: html
  output-file: implementation.html
  standalone: true
  embed-resources: true
  wrap: none
  default-image-extension: png
  css:
    - >-
      /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
  variables: {}
  
[1mmetadata[22m
  document-css: false
  lang: en
  engines:
    - path: /opt/quarto/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
  minimal: true
  theme: none
  title: Implementation details of epiworldR
  author:
    - George Vega Yon
    - Derek Meyer
  date: '2023-06-20'
  vignette: |
    %\VignetteIndexEntry{Implementation details of epiworldR} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
  
[WARNING] Could not convert TeX math 
  P(i\to j| \mbox{at most one}) = \frac{p_{ij} \times \prod_{k\neq i}\left(1 - p_{kj}\right)}{\prod_k\left(1 - p_{kj}\right) + \sum_k p_{kj} \times \prod_{l\neq k}\left(1 - p_{lj}\right)}
  , rendering as TeX
Output created: implementation.html

--- finished re-building ‘implementation.qmd’

--- re-building ‘likelihood-free-mcmc.qmd’ using html
[31m

processing file: likelihood-free-mcmc.qmd
[39m[31moutput file: likelihood-free-mcmc.knit.md

[39m[1mpandoc [22m
  to: html
  output-file: likelihood-free-mcmc.html
  standalone: true
  embed-resources: true
  wrap: none
  default-image-extension: png
  css:
    - >-
      /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
  variables: {}
  
[1mmetadata[22m
  document-css: false
  lang: en
  engines:
    - path: /opt/quarto/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
  minimal: true
  theme: none
  title: Likelihood Free Markhov Chain Monte Carlo (LFMCMC)
  author:
    - Andrew Pulsipher
  date: '`r Sys.Date()`'
  vignette: |
    %\VignetteIndexEntry{Likelihood Free Markhov Chain Monte Carlo (LFMCMC)} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
  
Output created: likelihood-free-mcmc.html

--- finished re-building ‘likelihood-free-mcmc.qmd’

--- re-building ‘mixing.qmd’ using html
[31m

processing file: mixing.qmd
[39m[31moutput file: mixing.knit.md

[39m[1mpandoc [22m
  to: html
  output-file: mixing.html
  standalone: true
  embed-resources: true
  wrap: none
  default-image-extension: png
  css:
    - >-
      /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
  variables: {}
  
[1mmetadata[22m
  document-css: false
  lang: en
  engines:
    - path: /opt/quarto/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
  minimal: true
  theme: none
  title: Mixing models
  author:
    - George Vega Yon
  date: '`r Sys.Date()`'
  vignette: |
    %\VignetteIndexEntry{Mixing models} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
  
[WARNING] Could not convert TeX math 
  \left[%
  \begin{array}{ccc}
  0.9 & 0.05 & 0.05 \\
  0.1 & 0.8 & 0.1 \\
  0.1 & 0.2 & 0.7 \\
  \end{array}%
  \right]
  , rendering as TeX
Output created: mixing.html

--- finished re-building ‘mixing.qmd’

--- re-building ‘run-multiple.qmd’ using html
[31m

processing file: run-multiple.qmd
[39m[31moutput file: run-multiple.knit.md

[39m[91mERROR: No space left on device (os error 28): tmpfile

Stack trace:
    at makeTempFileSync (ext:deno_fs/30_fs.js:176:10)
    at file:///opt/quarto/bin/quarto.js:98536:29
    at withAttempts (file:///opt/quarto/bin/quarto.js:98495:14)
    at Object.makeTempFileSync (file:///opt/quarto/bin/quarto.js:98536:10)
    at Object.createFile (file:///opt/quarto/bin/quarto.js:26225:19)
    at handleCombinedLuaProfiles (file:///opt/quarto/bin/quarto.js:129006:20)
    at runPandoc (file:///opt/quarto/bin/quarto.js:129540:5)
    at eventLoopTick (ext:core/01_core.js:179:7)
    at async renderPandoc (file:///opt/quarto/bin/quarto.js:130920:24)
    at async Object.onRender (file:///opt/quarto/bin/quarto.js:136863:30)
    at async renderFileInternal (file:///opt/quarto/bin/quarto.js:136840:9)
    at async renderFiles (file:///opt/quarto/bin/quarto.js:136571:9)
    at async render (file:///opt/quarto/bin/quarto.js:142225:19)
    at async _Command.actionHandler (file:///opt/quarto/bin/quarto.js:142470:24)
    at async _Command.execute (file:///opt/quarto/bin/quarto.js:102091:7)
    at async _Command.parseCommand (file:///opt/quarto/bin/quarto.js:101968:14)
    at async quarto4 (file:///opt/quarto/bin/quarto.js:187649:5)
    at async file:///opt/quarto/bin/quarto.js:187677:5
    at async file:///opt/quarto/bin/quarto.js:187532:14
    at async mainRunner (file:///opt/quarto/bin/quarto.js:187534:5)
    at async file:///opt/quarto/bin/quarto.js:187670:3[39m
Error: processing vignette 'run-multiple.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
  -----------------------------
  
  
  processing file: run-multiple.qmd
  [31moutput file: run-multiple.knit.md[39m
  
  [91mERROR: No space left on device (os error 28): tmpfile[39m
  
  Stack trace:
  at makeTempFileSync (ext:deno_fs/30_fs.js:176:10)
  at file:///opt/quarto/bin/quarto.js:98536:29
  at withAttempts (file:///opt/quarto/bin/quarto.js:98495:14)
  at Object.makeTempFileSync (file:///opt/quarto/bin/quarto.js:98536:10)
  at Object.createFile (file:///opt/quarto/bin/quarto.js:26225:19)
  at handleCombinedLuaProfiles (file:///opt/quarto/bin/quarto.js:129006:20)
  at runPandoc (file:///opt/quarto/bin/quarto.js:129540:5)
  at eventLoopTick (ext:core/01_core.js:179:7)
  at async renderPandoc (file:///opt/quarto/bin/quarto.js:130920:24)
  at async Object.onRender (file:///opt/quarto/bin/quarto.js:136863:30)
  at async renderFileInternal (file:///opt/quarto/bin/quarto.js:136840:9)
  at async renderFiles (file:///opt/quarto/bin/quarto.js:136571:9)
  at async render (file:///opt/quarto/bin/quarto.js:142225:19)
  at async _Command.actionHandler (file:///opt/quarto/bin/quarto.js:142470:24)
  at async _Command.execute (file:///opt/quarto/bin/quarto.js:102091:7)
  at async _Command.parseCommand (file:///opt/quarto/bin/quarto.js:101968:14)
  at async quarto4 (file:///opt/quarto/bin/quarto.js:187649:5)
  at async file:///opt/quarto/bin/quarto.js:187677:5
  at async file:///opt/quarto/bin/quarto.js:187532:14
  at async mainRunner (file:///opt/quarto/bin/quarto.js:187534:5)
  at async file:///opt/quarto/bin/quarto.js:187670:3
  
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘run-multiple.qmd’

SUMMARY: processing the following files failed:
  ‘advanced-modeling.qmd’ ‘getting-started.qmd’ ‘run-multiple.qmd’

Error: Vignette re-building failed.
Execution halted