Maintainer: ‘John Mount <jmount@win-vector.com>’

Reading Rd files failed with message:
  cannot open the connection
install log ‘’ does not exist
Maintainer: ‘Yi He <yi.he@stats.oxon.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "yi.he@stats.oxon.org"),
               person(given = "Yuelin",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Jeffrey Endelman <endelman@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Endelman",
                    role = c("aut", "cre"),
                    email = "endelman@wisc.edu")
as necessary.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
checkRd: (-1) lateformeeting.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:13: Lost braces in \itemize; meant \describe ?
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp3UCPEH/file1c492d4bc89266': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp3UCPEH/file1c492d4bc89266': No such file or directory
Error in file(con, "r") : cannot open the connection
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [11s/13s] OK
checkRd: (-1) regrad.Rd:46: Lost braces; missing escapes or markup?
    46 |  \item \code{x-axis} {1st column: The names of the different institutions}
       |                      ^
checkRd: (-1) regrad.Rd:47: Lost braces; missing escapes or markup?
    47 |  \item \code{y-axis} {2nd column: The value to show completeness}
       |                      ^
Packages required but not available: 'flextable', 'labelled', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bowen Wang <bowenwang7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bowen",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "bowenwang7@gmail.com")
as necessary.
Maintainer: ‘Houtao Deng <softwaredeng@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'Rphylopars', 'ecospat', 'biomod2'

Package suggested but not available for checking: ‘rnaturalearthhires’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Panos Toulis <panos.toulis@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panos",
                    family = "Toulis",
                    role = c("aut", "cre"),
                    email = "panos.toulis@chicagobooth.edu")
as necessary.
checkRd: (-1) rrinf_clust.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}. See \link{example_clustering} for details.}
       |                                                                                  ^
checkRd: (-1) rrtest_clust.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}.
       |                                                                                  ^
Maintainer: ‘Matthias Greiner <matthias.greiner@bfr.bund.de>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rriskDistributions-package.Rd’:
    \concept{
      Beta, Normal, Lognormal, Cauhy, Chi-Quad [TRUNCATED]
Package required but not available: ‘mc2d’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sort_tips.Rd’ ‘sort_tips.r’ ‘tips.r’ ‘validate_rankedPhylo.r’
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gregory Hunt <ghunt@wm.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpXsAXMx/file1c7a71524e915c': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpXsAXMx/file1c7a71524e915c': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available:
  'officer', 'flextable', 'rvg', 'moonBook', 'editData', 'ggpubr',
  'ztable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Beatriz Cobo Rodríguez <beacr@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Beatriz", "Cobo"),
                      family = "Rodríguez",
                      role = c("aut", "cre"),
                      email = "beacr@ugr.es"),
               person(given = c("María", "del", "Mar", "Rueda"),
                      family = "García",
                      role = "aut"),
               person(given = c("Antonio", "Arcos"),
                      family = "Cebrián",
                      role = "aut"))
as necessary.
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CART_Dummy.Rd’:
    \keyword{CART, partitions}
  File ‘CT.Rd’:
    \keyword{smoothing, hanning}
  File ‘GC.Rd’:
    \keyword{Logistic Regression, Credit data}
  File ‘octane.Rd’:
    \keyword{Histogram, Stem-and-leaf plots}
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ShortRead’

Package suggested but not available for checking: ‘polars’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rsample.Rcheck/00install.out’ for details.
Maintainer: ‘Paulo Prado <prado@ib.usp.br>’

The Description field contains
  Resampling Stats (http://www.resample.com) is an add-in for running
Please enclose URLs in angle brackets (<...>).
Running examples in ‘RSAtools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotting.ext
> ### Title: Plot extrema in the response surface along the lines of
> ###   congruence and incongruence
> ### Aliases: plotting.ext
> 
> ### ** Examples
> 
> ######ESTIMATE POLYNOMIAL MODEL FOR RSA
> RSA_NSfit  <- RSAmodel(formula= engagement ~ needs*supplies,
+ data= sim_NSfit, model= c("FM26_PARALLELASYMWEAK"))
[1] "Computing parallel asymmetric weak congruence... model (FM26_PARALLELASYMWEAK) ..."
> ######PLOT EXTREMA OVER LOC AND LOIC
> EXTsim <- plotting.ext(RSA_NSfit,model="FM26_PARALLELASYMWEAK",
+ xlim=c(-3,3),zlim=c(-3,3),acceleration=c(0,-0.3),
+ text_size=0.7,elabel_size=3,e_size=2,breaks_x=seq(-10, 10, 0.5),breaks_z=seq(-10, 10, 0.5))
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
ℹ The deprecated feature was likely used in the RSAtools package.
  Please report the issue to the authors.
> ggpubr::ggarrange(EXTsim[["LOC"]], EXTsim[["LOIC"]],
+ labels = c("A. Response over LOC", "B. Response over LOIC"),
+ nrow=1,ncol=2,font.label = list(size = 11))
Error in loadNamespace(x) : there is no package called ‘ggpubr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Xiuquan (Xander) Wang <xiuquan.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiuquan",
                      family = "Wang",
                      role = "aut",
                      comment = "Xander"),
               person(given = "Xiuquan",
                      family = "Wang",
                      role = "cre",
                      email = "xiuquan.wang@gmail.com",
                      comment = "Xander"))
as necessary.
checkRd: (-1) rSCA.modeling.Rd:61: Lost braces; missing escapes or markup?
    61 |                 a predefined string to specify how the information of leaf nodes will be stored in the map file. A full list of options for mapvalue is: {mean, max, min, median, interval, radius, variation, random}. Default value is "mean". Use "interval" to get an interval bounded by the minimum and maximum values, (i.e., [min, max]). The option of "radius" will output the mean and the radius [i.e., (max - min) / 2] at the same time. Use "variation" to output the mean and the standard deviation. The option of "random" will output the information as an interval like the "interval" option, but it will use a random value within the interval as the predicted value.
       |                                                                                                                                                          ^
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Aron Atkins <aron@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'FactoMineR', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mudassir Shabbir <mudassir.shabbir@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mudassir",
                      family = "Shabbir",
                      role = c("aut", "cre"),
                      email = "mudassir.shabbir@gmail.com"),
               person(given = "Nabil",
                      family = "Mustafa",
                      role = "aut"),
               person(given = "Saurabh",
                      family = "Ray",
                      role = "aut"))
as necessary.
Running examples in ‘rSDI-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotSDI
> ### Title: plotSDI generates a plot of the network and SDI metrics on a
> ###   geographic map.
> ### Aliases: plotSDI
> 
> ### ** Examples
> 
> TMSDI <- SDI(TurkiyeMigration.flows, TurkiyeMigration.nodes, variant="vuw")
> plotSDI(TMSDI, variant="vuw", circle.size.scale=1)
Error in plotSDI(TMSDI, variant = "vuw", circle.size.scale = 1) : 
  ggraph is required
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rSDI.Rmd’ using rmarkdown

Quitting from rSDI.Rmd:53-73 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggraph'
---
Backtrace:
    ▆
 1. └─base::library(ggraph)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rSDI.Rmd' failed with diagnostics:
there is no package called 'ggraph'
--- failed re-building ‘rSDI.Rmd’

SUMMARY: processing the following file failed:
  ‘rSDI.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘EL KHMISSI Mohamed <mohamed.el-khmissi01@etu.umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("EL", "KHMISSI"),
                    family = "Mohamed",
                    role = c("aut", "cre"),
                    email = "mohamed.el-khmissi01@etu.umontpellier.fr")
as necessary.
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Running examples in ‘rSDR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: optimal_alpha_boot
> ### Title: The optimal alpha for rSDR via bootstrap resampling
> ### Aliases: optimal_alpha_boot
> 
> ### ** Examples
> 
> library(ManifoldOptim)
Loading required package: Rcpp
> library(rSDR)
> library(future)
> library(future.apply)
> utils::data("ionosphere", package = "fdm2id")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘fdm2id’
Calls: <Anonymous> -> find.package
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘rSDR_vignette.Rmd’ using rmarkdown

Quitting from rSDR_vignette.Rmd:26-37 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'fdm2id'
---
Backtrace:
    ▆
 1. └─base::library(fdm2id)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rSDR_vignette.Rmd' failed with diagnostics:
there is no package called 'fdm2id'
--- failed re-building ‘rSDR_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rSDR_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mitra",
                    family = "Ebrahimpoor",
                    role = c("aut", "cre"),
                    email = "mitra.ebrahimpoor@gmail.com")
as necessary.
Maintainer: ‘Zhiyong Zhang <zhiyongzhang@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ke-Hai",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhiyongzhang@nd.edu"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpyE6Biu/ltx1c83ad2aa844e/semdiag.run.eqs.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Subhasree", "Bose", "with", "contributons", "from", "Saptarsi"),
                      family = "Goswami.",
                      role = "aut",
                      email = "subhasree10.7@gmail.com"),
               person(given = "Subhasree",
                      family = "Bose",
                      role = "cre",
                      email = "subhasree10.7@gmail.com"))
as necessary.
Maintainer: ‘Youhua Chen <haydi@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Youhua", "Chen,Tsung-Jen"),
                      family = "Shen",
                      role = "aut"),
               person(given = "Youhua",
                      family = "Chen",
                      role = "cre",
                      email = "haydi@126.com"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

Package has FOSS license, installs .class/.jar but has no 'java' directory.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rserve/libs/Rserve.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
  Found ‘rand’, possibly from ‘rand’ (C)
  Found ‘random’, possibly from ‘random’ (C)
  Found ‘srandom’, possibly from ‘srandom’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
File ‘Rserve/libs/Rserve.so’:
  Found non-API calls to R: ‘R_Consolefile’, ‘R_Outputfile’,
    ‘R_TempDir’, ‘R_Visible’, ‘ptr_R_Busy’, ‘ptr_R_ClearerrConsole’,
    ‘ptr_R_FlushConsole’, ‘ptr_R_ReadConsole’, ‘ptr_R_ResetConsole’,
    ‘ptr_R_ShowMessage’, ‘ptr_R_WriteConsole’, ‘ptr_R_WriteConsoleEx’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Martin Zaefferer <martin.zaefferer@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Konen",
                      role = "aut",
                      email = "wolfgang.konen@fh-koeln.de"),
               person(given = "Martin",
                      family = "Zaefferer",
                      role = c("aut", "cre"),
                      email = "martin.zaefferer@gmx.de"),
               person(given = c("Patrick", "Koch;", "Bug"),
                      family = "hunting",
                      role = "aut"),
               person(given = c("testing", "by", "Ayodele"),
                      family = "Fasika",
                      role = "aut"),
               person(given = "Ashwin",
                      family = "Kumar",
                      role = "aut"),
               person(given = "Prawyn",
                      family = "Jebakumar",
                      role = "aut"))
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Packages required but not available: 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yumi Kondo <y.kondo@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yumi",
                    family = "Kondo",
                    role = c("aut", "cre"),
                    email = "y.kondo@stat.ubc.ca")
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘risk-set-matching-with-rsmatch.Rmd’ using rmarkdown

Quitting from risk-set-matching-with-rsmatch.Rmd:105-117 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `coxpsmatch()`:
! Package 'survival' and 'nbpMatching' must be installed for `coxpsmatch()` to work.
ℹ Please install them.
---
Backtrace:
    ▆
 1. └─rsmatch::coxpsmatch(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'risk-set-matching-with-rsmatch.Rmd' failed with diagnostics:
Package 'survival' and 'nbpMatching' must be installed for `coxpsmatch()` to work.
ℹ Please install them.
--- failed re-building ‘risk-set-matching-with-rsmatch.Rmd’

SUMMARY: processing the following file failed:
  ‘risk-set-matching-with-rsmatch.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Paul F. Petrowski <pfpetrowski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "F."),
                    family = "Petrowski",
                    role = c("aut", "cre"),
                    email = "pfpetrowski@gmail.com")
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘get_supervisory_content.Rd’, ‘get_women_reproductive_age_socsim.Rd’, ‘jul.Rd’, ‘read_omar.Rd’, ‘read_opop.Rd’, ‘retrieve_kin.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpGb8C1M/file1cabe462d84428/download_rates.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘rsocsim-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpxoq5jy/file1cb1351b01266d/estimate_fertility_rates.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘BayesianTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fmesher’

Packages suggested but not available for checking:
  'INLA', 'inlabru', 'MetricGraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Theodore Lytras <thlytras@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Theodore",
                    family = "Lytras",
                    role = c("aut", "cre"),
                    email = "thlytras@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Tiago Mendes Dantas <t.mendesdantas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tiago", "Mendes"),
                    family = "Dantas",
                    role = c("aut", "cre"),
                    email = "t.mendesdantas@gmail.com")
as necessary.
Maintainer: ‘Melina Vidoni <melinavidoni@santafe-conicet.gov.ar>’

Found the following (possibly) invalid file URIs:
  URI: reference/get_shortest_path.html
    From: inst/doc/igraph.html
  URI: reference/index.html
    From: inst/doc/rsppfp.html
  URI: reference/direct_graph.html
    From: inst/doc/rsppfp.html
  URI: reference/parse_vpath.html
    From: inst/doc/rsppfp.html
  URI: articles/benchmark.html
    From: README.md
  URI: articles/references.html
    From: README.md

Found the following URLs which should use \doi (with the DOI name only):
  File ‘modify_graph_hsu.Rd’:
    https://doi.org/10.1007/978-3-642-03095-6_60
  File ‘modify_graph_vd.Rd’:
    https://doi.org/10.1016/j.ejor.2004.01.032
Packages required but not available: 'MVN', 'ShinyItemAnalysis', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhasree",
                    family = "Bose",
                    role = c("aut", "cre"),
                    email = "subhasree10.7@gmail.com")
as necessary.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Busra Sevinc <busra.sevincc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Busra",
                      family = "Sevinc",
                      role = c("aut", "cre"),
                      email = "busra.sevincc@gmail.com"),
               person(given = "Bekir",
                      family = "Cetintav",
                      role = "aut"),
               person(given = "Melek",
                      family = "Esemen",
                      role = "aut"),
               person(given = "Selma",
                      family = "Gurler",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RSSL.Rcheck/00install.out’ for details.
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = c("aut", "cre"),
                      email = "rezgararabzadeh@ut.ac.ir"),
               person(given = "Parisa",
                      family = "Aberi",
                      role = "aut"),
               person(given = "Kaveh",
                      family = "Panaghi",
                      role = "aut"),
               person(given = "Shahab",
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Majid",
                      family = "Montaseri",
                      role = "aut"))
as necessary.
Maintainer: ‘Shawn T. O'Neil <shawn.oneil@cgrb.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Shawn", "T."),
                    family = "O'Neil",
                    role = c("aut", "cre"),
                    email = "shawn.oneil@cgrb.oregonstate.edu")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom-funs.R’
Package required but not available: ‘shinystan’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

Package suggested but not available for checking: ‘cmdstanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"),
               person(given = "Alexander",
                      family = "Franks",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘themis’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marcus W. Beck <mbafs2012@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘ggspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Leydold",
                    role = c("aut", "cre"),
                    email = "josef.leydold@wu.ac.at")
as necessary.
Running massageExamples to create ‘rstream-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpfVtSqk/file1cb1b95054a780/rstream.RNG.R': No space left on device
Execution halted
 NONE
Running ‘test_lecuyer.R’ [1s/1s]
  Running ‘test_load.R’ [0s/0s]
  Running ‘test_mrg32k3a.R’ [1s/1s]
  Running ‘test_routines.R’ [0s/0s]
  Running ‘test_runif.R’ [1s/1s]
  Running ‘test_version.R’ [0s/0s]
Running the tests in ‘tests/test_load.R’ failed.
Complete output:
  Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘dialogs.Rmd’ using rmarkdown
--- finished re-building ‘dialogs.Rmd’

--- re-building ‘document-manipulation.Rmd’ using rmarkdown
--- finished re-building ‘document-manipulation.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘projects.Rmd’ using rmarkdown
--- finished re-building ‘projects.Rmd’

Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/Rtmp7OhOoR/file1cbc446711159b.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Martin Atzmueller <martin@atzmueller.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Atzmueller",
                    role = c("aut", "cre"),
                    email = "martin@atzmueller.net")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Package required but not available: ‘bellreg’

Packages suggested but not available for checking:
  'flexsurv', 'GGally', 'survstan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kasper",
                      family = "Welbers",
                      role = c("aut", "cre"),
                      email = "kasperwelbers@gmail.com"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Johan Jordaan <djjordaan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johan",
                    family = "Jordaan",
                    role = c("aut", "cre"),
                    email = "djjordaan@gmail.com")
as necessary.
Maintainer: ‘Haydar Demirhan <haydar.demirhan@rmit.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haydar",
                    family = "Demirhan",
                    role = c("aut", "cre"),
                    email = "haydar.demirhan@rmit.edu.au")
as necessary.
Packages required but not available: 'flextable', 'officer'

Packages suggested but not available for checking: 'car', 'tern'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘rtables-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: custom_split_funs
> ### Title: Custom split functions
> ### Aliases: custom_split_funs
> 
> ### ** Examples
> 
> # Example of a picky split function. The number of values in the column variable
> # var decrees if we are going to print also the column with all observation
> # or not.
> 
> picky_splitter <- function(var) {
+   # Main layout function
+   function(df, spl, vals, labels, trim) {
+     orig_vals <- vals
+ 
+     # Check for number of levels if all are selected
+     if (is.null(vals)) {
+       vec <- df[[var]]
+       vals <- unique(vec)
+     }
+ 
+     # Do a split with or without All obs
+     if (length(vals) == 1) {
+       do_base_split(spl = spl, df = df, vals = vals, labels = labels, trim = trim)
+     } else {
+       fnc_tmp <- add_overall_level("Overall", label = "All Obs", first = FALSE)
+       fnc_tmp(df = df, spl = spl, vals = orig_vals, trim = trim)
+     }
+   }
+ }
> 
> # Data sub-set
> d1 <- subset(ex_adsl, ARM == "A: Drug X" | (ARM == "B: Placebo" & SEX == "F"))
> d1 <- subset(d1, SEX %in% c("M", "F"))
> d1$SEX <- factor(d1$SEX)
> 
> # This table uses the number of values in the SEX column to add the overall col or not
> lyt <- basic_table() %>%
+   split_cols_by("ARM", split_fun = drop_split_levels) %>%
+   split_cols_by("SEX", split_fun = picky_splitter("SEX")) %>%
+   analyze("AGE", show_labels = "visible")
> tbl <- build_table(lyt, d1)
> tbl
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 'toString': cannot open file '/tmp/RtmpShXy2t/file1d7891795481e2.pdf'
Calls: <Anonymous> ... matrix_form -> open_font_dev -> pdf -> .handleSimpleError -> h
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_row.Rd’ ‘delete_selected_rows.Rd’ ‘for_each_col.Rd’ ‘redo.Rd’
    ‘set_calculation.Rd’ ‘set_column_defaults.Rd’ ‘set_editor.Rd’
    ‘set_formatter_color.Rd’ ‘set_formatter_datetime.Rd’
    ‘set_formatter_html.Rd’ ‘set_formatter_image.Rd’
    ‘set_formatter_link.Rd’ ‘set_formatter_money.Rd’
    ‘set_formatter_plaintext.Rd’ ‘set_formatter_progress.Rd’
    ‘set_formatter_star.Rd’ ‘set_formatter_textarea.Rd’
    ‘set_formatter_tick_cross.Rd’ ‘set_formatter_toggle_switch.Rd’
    ‘set_formatter_traffic_light.Rd’ ‘set_header_filter.Rd’
    ‘set_multi_column_header.Rd’ ‘set_options_group_by.Rd’
    ‘set_options_pagination.Rd’ ‘set_tooltip.Rd’ ‘tabulatorContext.Rd’
    ‘titanic.Rd’ ‘trigger_download.Rd’ ‘trigger_get_data.Rd’
    ‘trigger_get_sheet_data.Rd’ ‘undo.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpv2IgSU/file1ce51978e100c2/set_column_defaults.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running examples in ‘rtabulator-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tabulator_options
> ### Title: Setup options for 'tabulator()' HTML widget
> ### Aliases: tabulator_options
> 
> ### ** Examples
> 
> setup <- tabulator_options(
+   group_by = "Species",
+   pagination = TRUE,
+   pagination_size = 10,
+   pagination_size_selector = c(10, 20, 50),
+   movable_columns = TRUE,
+   movable_rows = TRUE
+ )
> tabulator(iris, setup)
Warning in dir.create(www_dir) :
  cannot create dir '/tmp/RtmpGhszFb/viewhtml1ce79e1c47bc26', reason 'No space left on device'
Error in normalizePath(dirname(file), mustWork = TRUE) : 
  path[1]="/tmp/RtmpGhszFb/viewhtml1ce79e1c47bc26": No such file or directory
Calls: <Anonymous> ... html_print -> save_html -> save_html.default -> normalizePath
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpw73fgS/ltx1cec1540fccfbf/titanic.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘David Zarruk Valencia <davidzarruk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Zarruk", "Valencia", "&", "Rodrigo", "Azuero"),
                      family = "Melo",
                      role = "aut"),
               person(given = c("David", "Zarruk"),
                      family = "Valencia",
                      role = "cre",
                      email = "davidzarruk@gmail.com"))
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Ruscio",
                      role = c("aut", "cre"),
                      email = "ruscio@tcnj.edu"),
               person(given = "Shirley",
                      family = "Wang",
                      role = "aut",
                      email = "shirleywang@g.harvard.edu"))
as necessary.
Maintainer: ‘Mateu Menendez-Serra <mateu.menendez@ceab.csic.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mateu",
                      family = "Menendez-Serra",
                      role = c("aut", "cre"),
                      email = "mateu.menendez@ceab.csic.es"),
               person(given = c("Vicente", "J."),
                      family = "Ontiveros",
                      role = "aut"),
               person(given = c("Emilio", "O."),
                      family = "Casamayor",
                      role = "aut"),
               person(given = "David",
                      family = "Alonso",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘RTCC.Rd’:
    https://doi.org/10.1038/s41396-019-0454-4
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                              ^
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                                    ^
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘extract-methods.Rd’, ‘fnorm-methods.Rd’, ‘fold.Rd’, ‘hadamard_list.Rd’, ‘head-methods.Rd’, ‘hosvd.Rd’, ‘indscal.Rd’, ‘initialize-methods.Rd’, ‘innerProd-methods.Rd’, ‘k_fold.Rd’, ‘k_unfold-methods.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpunbblC/ltx10bd9b6e2cdac1/tucker.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Jake Anderson <ajakef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Anderson",
                    role = c("aut", "cre"),
                    email = "ajakef@gmail.com")
as necessary.
Conversion of ‘NEWS.md’ failed:
pandoc: /tmp/RtmpuFiArb/pandoc1c9bca3d0ea5c1.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Maintainer: ‘Loren Collingwood <loren.collingwood@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "P."),
                      family = "Jurka",
                      role = "aut"),
               person(given = "Loren",
                      family = "Collingwood",
                      role = c("aut", "cre"),
                      email = "loren.collingwood@gmail.com"),
               person(given = c("Amber", "E."),
                      family = "Boydstun",
                      role = "aut"),
               person(given = "Emiliano",
                      family = "Grossman",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Lingxiao Li <lilingxiao@mail.sdu.edu.cn>’

The Description field contains
  discussed in Barigozzi et al. (2022) <arXiv:2206.09800>, and Barigozzi
  et al. (2023) <arXiv:2303.18163>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rtForecastEval-vignette.Rmd’ using rmarkdown

Quitting from rtForecastEval-vignette.Rmd:120-211 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package "sde" is required for df_gen(). Install with install.packages("sde").
---
Backtrace:
    ▆
 1. ├─... %>% ungroup()
 2. ├─dplyr::ungroup(.)
 3. ├─dplyr::mutate(...)
 4. ├─dplyr::group_by(., grid)
 5. └─rtForecastEval::df_gen(N = nsamp, Ngame = ngame)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rtForecastEval-vignette.Rmd' failed with diagnostics:
Package "sde" is required for df_gen(). Install with install.packages("sde").
--- failed re-building ‘rtForecastEval-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rtForecastEval-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘rtiktoken/libs/rtiktoken.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'tidyquant', 'timetk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘str_rtl.Rd’
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running massageExamples to create ‘rtms-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
No examples, no tests, no vignettes
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rtpcr.Rcheck/00install.out’ for details.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) rt_GET.Rd:13: Lost braces
    13 | code{\link[httr]{GET}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
checkRd: (-1) rt_POST.Rd:13: Lost braces
    13 | code{\link[httr]{POST}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘slope_rast.Rd’, ‘smooth_wSG.Rd’, ‘split_data.Rd’, ‘summary_lm.Rd’
Maintainer: ‘Avi Blinder <aviblinder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Avi",
                    family = "Blinder",
                    role = c("aut", "cre"),
                    email = "aviblinder@gmail.com")
as necessary.
Maintainer: ‘Patrick Bogaart <rtrim@cbs.nl>’

Reading Rd files failed with message:
  cannot open the connection
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘mcMat.Rmd’ using rmarkdown

Quitting from mcMat.Rmd:20-29 [code]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `Rcpp::sourceCpp()`:
! Error 1 occurred building shared library.
---
Backtrace:
    ▆
 1. └─Rcpp::sourceCpp("code/mcMat.cpp", verbose = FALSE, embeddedR = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mcMat.Rmd' failed with diagnostics:
Error 1 occurred building shared library.
--- failed re-building ‘mcMat.Rmd’

--- re-building ‘rTRNG.Rmd’ using rmarkdown
Building shared library for Rcpp code chunk...

> exampleCpp()
 [1] 0.908596011 0.868944127 0.354053042 0.737823978 0.005293939 0.586628362
 [7] 0.686208571 0.708826658 0.662295773 0.818212143
--- finished re-building ‘rTRNG.Rmd’

--- re-building ‘rTRNG.useR2017.pdf.asis’ using asis
--- finished re-building ‘rTRNG.useR2017.pdf.asis’

SUMMARY: processing the following file failed:
  ‘mcMat.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Houjie Wang <wanghoujie6688@gmail.com>’

The Description field contains
  Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fmesher’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexandre Maurel <alexandre.maurel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandre",
                    family = "Maurel",
                    role = c("aut", "cre"),
                    email = "alexandre.maurel@gmail.com")
as necessary.

The Description field contains
  (https://github.com/tercen/TSON).
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Babak Naimi <naimi.b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babak",
                    family = "Naimi",
                    role = c("aut", "cre"),
                    email = "naimi.b@gmail.com")
as necessary.
checkRd: (-1) rts.Rd:32: Lost braces
    32 | If a name of a raster time series file is provided for the \code{x} argument, it acts the same as code{\link[rts]{read.rts}}.
       |                                                                                                       ^
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Park and Wang (2018)<arXiv:1807.02215>. This work was partially
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpldgZvC/Rf1cacbd6055fedb': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rtypeform.Rcheck/00install.out’ for details.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Packages required but not available: 'ridigbio', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘parsnip’

Package suggested but not available for checking: ‘recipes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flextable', 'formods', 'onbrand', 'plotly'

Packages suggested but not available for checking:
  'babelmixr2', 'nonmem2rx', 'nlmixr2', 'ubiquity'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gtsummary', 'labelled', 'rio', 'tidymodels', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘improvement.Rmd’ using rmarkdown

Quitting from improvement.Rmd:102-119 [road-to-improvement]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/RtmpHBI6Qu/file1d979331f80819'
---
Backtrace:
    ▆
 1. ├─base::withVisible(knit_print(x, ...))
 2. ├─knitr::knit_print(x, ...)
 3. ├─knitr:::knit_print.default(x, ...)
 4. │ └─knitr::normal_print(x)
 5. │   ├─base::print(x)
 6. │   └─base::print.default(x)
 7. ├─base (local) `<fn>`(x)
 8. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
 9.   └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'improvement.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpHBI6Qu/file1d979331f80819'
--- failed re-building ‘improvement.Rmd’

--- re-building ‘runcharter.Rmd’ using rmarkdown
--- finished re-building ‘runcharter.Rmd’

SUMMARY: processing the following file failed:
  ‘improvement.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘runDRT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: run_drt
> ### Title: Run Doubly Ranked Tests
> ### Aliases: run_drt run_drt.default run_drt.formula
> 
> ### ** Examples
> 
> #### Two Sample Problem: Resin Viscosity ####
> library(FDboost)
Loading required package: mboost
Loading required package: parallel
Loading required package: stabs
This is FDboost 1.1-4. 
> data("viscosity")
> 
> Xv    <- matrix(viscosity$visAll, nrow = nrow(viscosity$visAll), ncol = ncol(viscosity$visAll))
> fXv   <- refund::fpca.face(Xv)
Error in loadNamespace(x) : there is no package called ‘refund’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Bryan Jenks <bryanjenks@protonmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/tallguyjenks/runes
which should likely be
  https://github.com/tallguyjenks/runes/issues
instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/runExamplesWrapper.Rcheck/00install.out’ for details.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Maintainer: ‘Minh Long Nguyen <edelweiss611428@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rusk.Rcheck/00install.out’ for details.
Maintainer: ‘Mauricio Santelices <m.santelicesa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauricio",
                    family = "Santelices",
                    role = c("aut", "cre"),
                    email = "m.santelicesa@gmail.com")
as necessary.
Packages required but not available: 'car', 'FactoMineR'

Packages suggested but not available for checking:
  'FSA', 'glmmTMB', 'RGCCA'

Package which this enhances but not available for checking: ‘glmmADMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                                   ^
Maintainer: ‘Etor Arza <etorarza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Etor",
                    family = "Arza",
                    role = c("aut", "cre"),
                    email = "etorarza@gmail.com")
as necessary.
Maintainer: ‘John Bryant <john@bayesiandemography.com>’

Reading Rd files failed with message:
  cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpeBwUOU/Rf1d42d02fd1fcc0': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmphpln2m/ltx1dd590553bbd3d/read_html.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.
Maintainer: ‘Charles Determan Jr <cdetermanjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Determan Jr.",
                      role = "aut"),
               person(given = "Charles",
                      family = "Determan Jr",
                      role = "cre",
                      email = "cdetermanjr@gmail.com"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CRAN.R-project.org
    From: README.md
Maintainer: ‘Alun Thomas <Alun.Thomas@utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alun",
                    family = "Thomas",
                    role = c("aut", "cre"),
                    email = "alun.thomas@utah.edu")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘rvinecopulib-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.rvine_structure
> ### Title: Plotting R-vine structures
> ### Aliases: plot.rvine_structure plot.rvine_matrix
> 
> ### ** Examples
> 
> plot(cvine_structure(1:5))
Error in plot.vinecop_dist(vinecop_dist(pcs, x), ...) : 
  The 'ggraph' package must be installed to plot.
Calls: plot -> plot.rvine_structure -> plot.vinecop_dist
Execution halted
Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(rvinecopulib)
  > 
  > 
  > test_check("rvinecopulib")
  Saving _problems/test_rvine_structure-59.R
  Saving _problems/test_rvine_structure-90.R
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 335 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_rvine_structure.R:59:3'): plot functions work ──────────────────
  Error in `plot.vinecop_dist(vc)`: The 'ggraph' package must be installed to plot.
  Backtrace:
      ▆
   1. ├─base::plot(vc) at test_rvine_structure.R:59:3
   2. └─rvinecopulib:::plot.vinecop_dist(vc)
  ── Failure ('test_rvine_structure.R:90:3'): rvine_structure_sim() works ────────
  Expected `plot(struct)` not to throw any errors.
  Actually got a <simpleError> with message:
    The 'ggraph' package must be installed to plot.
  ── Error ('test_vinecop_dist.R:115:3'): plot functions work ────────────────────
  Error in `plot.vinecop_dist(vc, edge_labels = "family", var_names = "legend")`: The 'ggraph' package must be installed to plot.
  Backtrace:
       ▆
    1. ├─testthat::expect_silent(...) at test_vinecop_dist.R:115:3
    2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ ├─withr::with_output_sink(...)
    5. │   │ │ └─base::force(code)
    6. │   │ ├─base::withCallingHandlers(...)
    7. │   │ └─base::withVisible(code)
    8. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. ├─base::plot(vc, edge_labels = "family", var_names = "legend")
   10. └─rvinecopulib:::plot.vinecop_dist(...)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 335 ]
  Error:
  ! Test failures.
  Execution halted
install log ‘’ does not exist
install log ‘’ does not exist
Maintainer: ‘Navarro Fabien <fnavarro@math.cnrs.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "F.",
                      family = "Navarro",
                      role = "aut"),
               person(given = "C.",
                      family = "Chesneau",
                      role = "aut"),
               person(given = "Navarro",
                      family = "Fabien",
                      role = "cre",
                      email = "fnavarro@math.cnrs.fr"))
as necessary.
checkRd: (-1) HardThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
checkRd: (-1) SoftThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
install log ‘’ does not exist
Maintainer: ‘Mafalda Sá Ferreira <msm.ferreira@campus.fct.unl.pt>’

The Description field contains
  <arXiv:2112.07508v3> and Oliveira et al. (2021) <arXiv:2102.05373v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘badger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘spatial-utility-functions.Rmd’ using rmarkdown

Quitting from spatial-utility-functions.Rmd:122-146 [point-poly-dist-illus]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `st_geometry(nc[53, ]) %>% st_cast("POINT")`:
! could not find function "%>%"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spatial-utility-functions.Rmd' failed with diagnostics:
could not find function "%>%"
--- failed re-building ‘spatial-utility-functions.Rmd’

SUMMARY: processing the following file failed:
  ‘spatial-utility-functions.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘badger’

Package suggested but not available for checking: ‘BiocPkgTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpBr6ogK/ltx2028a2250f7268/countriesLow.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Andy South <southandy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andy",
                    family = "South",
                    role = c("aut", "cre"),
                    email = "southandy@gmail.com")
as necessary.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric Hare <eric@omnianalytics.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Shum",
                      role = "aut",
                      email = "alex@ALShum.com"),
               person(given = "Eric",
                      family = "Hare",
                      role = "cre",
                      email = "eric@omnianalytics.io"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...............................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpPT4mWP/ltx20120830ed7a65/rxVersion.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rxref.Rcheck/00install.out’ for details.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpGvmeh5/file1dd02a51738cc9/get.tausB.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ryandexdirect.Rcheck/00install.out’ for details.
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.

The Description field contains
  'Yandex Translate' (https://translate.yandex.com/) is a statistical
  https://tech.yandex.com/translate/doc/dg/concepts/About-docpage/ .
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Tom August <tomaug@ceh.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "August",
                    role = c("aut", "cre"),
                    email = "tomaug@ceh.ac.uk")
as necessary.
Packages required but not available: 'factoextra', 'FactoMineR'

Packages suggested but not available for checking: 'car', 'metan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joris Bierkens <j.bierkens@vu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joris",
                    family = "Bierkens",
                    role = c("aut", "cre"),
                    email = "j.bierkens@vu.nl")
as necessary.

The Description field contains
  <arXiv:1607.03188> applied and Bouncy Particle Sampler
  <arXiv:1510.02451> for a Gaussian target and Student distribution.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                   ^
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                                 ^
checkRd: (-1) ZigZagLogistic.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{dataY}{Vector of length n containing {0, 1}-valued observations of the dependent variable y.}
       |                                            ^
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘s2_data_tbl_countries.Rd’, ‘s2_earth_radius_meters.Rd’, ‘s2_geog_point.Rd’, ‘s2_interpolate.Rd’, ‘s2_is_collection.Rd’, ‘s2_lnglat.Rd’
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘s3_check_for_file.R’ ‘s3_file_size.R’ ‘s3_get.Rd’ ‘s3_get_files.R’
    ‘s3_parse_uri.R’
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pec', 'aftgee', 'afthd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpU2Zhjr/file1dcf1a7ef6cdf2': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpU2Zhjr/file1dcf1a7ef6cdf2': No such file or directory
Error in file(con, "r") : cannot open the connection
File ‘S7/libs/S7.so’:
  Found non-API call to R: ‘Rf_findVarInFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Jakub Nowosad <nowosad.jakub@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/saccadr.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SACCR.Rcheck/00install.out’ for details.
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rampal", "S.", "Etienne", "&", "Bart"),
                      family = "Haegeman",
                      role = "aut"),
               person(given = c("Rampal", "S."),
                      family = "Etienne",
                      role = "cre",
                      email = "r.s.etienne@rug.nl"))
as necessary.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Packages required but not available:
  'SUMMER', 'surveyPrev', 'haven', 'leaflegend', 'leafsync', 'plotly'

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sheerin Dahwan Aziz <sheerindahwan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"),
               person(given = c("Sheerin", "Dahwan"),
                      family = "Aziz",
                      role = c("aut", "cre"),
                      email = "sheerindahwan@gmail.com"))
as necessary.
Maintainer: ‘Rizki Ananda Fauziah <rizkiananda133@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rizki", "Ananda"),
                      family = "Fauziah",
                      role = c("aut", "cre"),
                      email = "rizkiananda133@gmail.com"),
               person(given = c("Ika", "Yuni"),
                      family = "Wulansari",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Rizqina Rahmati <221810583@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rizqina",
                      family = "Rahmati",
                      role = c("aut", "cre"),
                      email = "221810583@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Wicak Surya Hasani <221710052@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Wicak", "Surya"),
                      family = "Hasani",
                      role = c("aut", "cre"),
                      email = "221710052@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Packages required but not available:
  'tidymodels', 'parsnip', 'recipes', 'rsample', 'tune', 'workflows',
  'bonsai', 'themis', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpOiZcgY/runri1e8fc82666bb55', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Execution halted
Maintainer: ‘Yolanda Marhuenda <y.marhuenda@umh.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabel",
                      family = "Molina",
                      role = "aut"),
               person(given = "Yolanda",
                      family = "Marhuenda",
                      role = c("aut", "cre"),
                      email = "y.marhuenda@umh.es"))
as necessary.
Maintainer: ‘Sebastian Warnholz <wahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Warnholz",
                    role = c("aut", "cre"),
                    email = "wahani@gmail.com")
as necessary.
Packages required but not available: 'emdi', 'HLMdiag'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Asun Lubiano <lubiano@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Trutschnig",
                      role = "aut",
                      email = "wolfgang@trutschnig.net"),
               person(given = "Asun",
                      family = "Lubiano",
                      role = c("aut", "cre"),
                      email = "lubiano@uniovi.es"))
as necessary.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp2R5fRr/Rf1e13076b5dbcb6': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Alexander Ly <a.ly@jasp-stats.org>’

The Description field contains
  (2019) "Safe Testing" <arXiv:1906.07801>, for details on safe logrank
  Horizon" <arXiv:2011.06931v3> and Turner, Ly and Grunwald (2021) "Safe
  beyond" <arXiv:2106.02693> for details on safe contingency table tests.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘contingency-tables-vignette.Rmd’ using rmarkdown
--- finished re-building ‘contingency-tables-vignette.Rmd’

--- re-building ‘safestats-vignette.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpM4TT0p/Rf1f303cc753299': No space left on device

Quitting from safestats-vignette.Rmd:444-458 [unnamed-chunk-34]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from safestats-vignette.Rmd:444-458 [unnamed-chunk-34]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'safestats-vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘safestats-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘safestats-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpIeUMPn/ltx1f397fba9537d/safeTTestStat.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Running massageExamples to create ‘safetensors-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/Rtmp3pcemd/file1e291b1df88a4f', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/Rtmp3pcemd/file1e291b1df88a4f/safe_load_file.R': No such file or directory
Execution halted
 NONE
Running massageExamples to create ‘sageR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpkfGj1u/file1e9c92d7ccddd/sheppardCorrection.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Dragonera.Rd’:
    https://doi.org/10.1016/j.apenergy.2017.09.030
  File ‘EstacaDeBares.Rd’:
    https://doi.org/10.1016/j.oceaneng.2015.05.038
    https://doi.org/10.1109/JOE.2016.2529400
  File ‘SailoR-package.Rd’:
    https://doi.org/10.5194/gmd-13-3221-2020
  File ‘WRF.Rd’:
    https://doi.org/10.1002/2017JD027511
    https://doi.org/10.1007/s00382-019-04673-9
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘class-2-differential.r’ ‘dual-apply.r’ ‘dual-math.r’
    ‘dual-summary.r’ ‘dual-test-near-equality.r’ ‘dual.r’ ‘dualFun1.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpTN8Vqx/ltx1f3733411ac345/build_proxy.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Encountered the following conversion/validation errors:
cannot open the connection
Maintainer: ‘Yuwen Gu <yuwen.gu@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuwen",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "yuwen.gu@uconn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "zouxx019@umn.edu"))
as necessary.
Maintainer: ‘Scott Vander Wiel <scottv@lanl.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hannah",
                      family = "Director",
                      role = "aut"),
               person(given = c("Scott", "Vander"),
                      family = "Wiel",
                      role = c("aut", "cre"),
                      email = "scottv@lanl.gov"),
               person(given = "James",
                      family = "Gattiker",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpvHyNl9/ltx218248245a44e5/rasterize.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘Hmisc’

Package suggested but not available for checking: ‘jtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Baldassaro <mbaldassaro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Baldassaro",
                    role = c("aut", "cre"),
                    email = "mbaldassaro@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sampler.Rcheck/00install.out’ for details.
Package required but not available: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hongchao Qi <hcqi1992@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongchao",
                      family = "Qi",
                      role = c("aut", "cre"),
                      email = "hcqi1992@gmail.com"),
               person(given = "Fang",
                      family = "Zhu",
                      role = "aut"))
as necessary.
Maintainer: ‘Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hugo", "Andres", "Gutierrez"),
                    family = "Rojas",
                    role = c("aut", "cre"),
                    email = "hagutierrezro@gmail.com")
as necessary.
Maintainer: ‘William Wheeler <WheelerB@imsweb.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mitchell", "H."),
                      family = "Gail",
                      role = "aut"),
               person(given = "William",
                      family = "Wheeler",
                      role = "cre",
                      email = "WheelerB@imsweb.com"))
as necessary.
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Jonathan Lisic <jlisic@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Lisic",
                      role = c("aut", "cre"),
                      email = "jlisic@gmail.com"),
               person(given = "Anton",
                      family = "Grafström",
                      role = "aut"))
as necessary.
Maintainer: ‘Juliane Manitz <r@manitz.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juliane",
                      family = "Manitz",
                      role = c("aut", "cre"),
                      email = "r@manitz.org"),
               person(given = "Mark",
                      family = "Hempelmann",
                      role = "ctb"),
               person(given = "Goeran",
                      family = "Kauermann",
                      role = "ctb"),
               person(given = "Helmut",
                      family = "Kuechenhoff",
                      role = "aut"),
               person(given = "Shuai",
                      family = "Shao",
                      role = "ctb"),
               person(given = "Cornelia",
                      family = "Oberhauser",
                      role = "ctb"),
               person(given = "Nina",
                      family = "Westerheide",
                      role = "ctb"),
               person(given = "Manuel",
                      family = "Wiesenfarth",
                      role = "ctb"))
as necessary.
Maintainer: ‘Emilio Lopez Escobar <emilio@quantos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emilio", "Lopez"),
                      family = "Escobar",
                      role = c("aut", "cre", "cph"),
                      email = "emilio@quantos.mx"),
               person(given = c("Ernesto", "Barrios"),
                      family = "Zamudio",
                      role = "ctb",
                      email = "ebarrios@itam.mx"),
               person(given = c("Juan", "Francisco", "Munoz"),
                      family = "Rosas",
                      role = "ctb",
                      email = "jfmunoz@go.ugr.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpTvPzb8/file1e7c4c6876436d/Z_identities.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘samplr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpPNwUwl/file1e86054971e831/sampler_mc3.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘abs-simulations.Rmd’ using rmarkdown
--- finished re-building ‘abs-simulations.Rmd’

--- re-building ‘custom-density-functions.Rmd’ using rmarkdown
--- finished re-building ‘custom-density-functions.Rmd’

--- re-building ‘how-to-sample.Rmd’ using rmarkdown
--- finished re-building ‘how-to-sample.Rmd’

--- re-building ‘multivariate-mixtures.Rmd’ using rmarkdown
--- finished re-building ‘multivariate-mixtures.Rmd’

--- re-building ‘samplr.Rmd’ using rmarkdown
--- finished re-building ‘samplr.Rmd’

--- re-building ‘supported-distributions.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpK0njnF/Rf1ee3e42810a748': No space left on device

Quitting from supported-distributions.Rmd:132-140 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from supported-distributions.Rmd:132-140 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'supported-distributions.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘supported-distributions.Rmd’

--- re-building ‘time-comparisons.Rmd’ using rmarkdown
--- finished re-building ‘time-comparisons.Rmd’

SUMMARY: processing the following file failed:
  ‘supported-distributions.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SAMprior.Rcheck/00install.out’ for details.
Maintainer: ‘Jiayi Ji <Jiayi.Ji@mountsinai.org>’

The Description field contains
  cancer data <arXiv:2012.06093>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmp9Txxq1/Rd2pdf1e3111591fcf52/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "Myles"),
                    family = "McDonnell",
                    role = c("aut", "cre"),
                    email = "robertmylesmcdonnell@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SanFranBeachWater.Rcheck/00install.out’ for details.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sanketphonetictranslator.Rcheck/00install.out’ for details.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "January",
                      family = "Weiner",
                      role = "aut"))
as necessary.
Maintainer: ‘Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atsushi",
                    family = "Kawaguchi",
                    role = c("aut", "cre"),
                    email = "kawa_a24@yahoo.co.jp")
as necessary.
Maintainer: ‘Murtaza Nasir <mail@murtaza.cc>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/santaR.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sapfluxnetr.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cmc_psat.Rd’ ‘h-fun.R’ ‘mc-test.R’ ‘tshift.R’
Maintainer: ‘Stuart K. Grange <stuart.grange@york.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/saqgetr.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/saros.base.Rcheck/00install.out’ for details.
Packages required but not available: 'mschart', 'officer'

Packages suggested but not available for checking: 'haven', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AzureStor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘libr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) gen.ds.Rd:43-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:50-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:64-65: Lost braces
    64 |    \item{the dependence parameter \code{dep} or the vector of dependence parameters \code{dep}. When missing, these coefficients are obtained from independent standard uniform sampling.
       |         ^
checkRd: (-1) gen.ds.Rd:66: Lost braces
    66 |    \item{the list \code{asy} of asymmetric weights \eqn{\beta_{i,b}} for \eqn{b \in B}  and \eqn{i \in b}. When missing, these coefficients are obtained from independent standard uniform sampling followed by renormalization in order to satisfy the sum-to-one constraints.}
       |         ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘satdad.Rmd’ using rmarkdown

Quitting from satdad.Rmd:350-352 [unnamed-chunk-22]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/RtmpmlbmPQ/file1ecf811a534348'
---
Backtrace:
    ▆
 1. └─satdad::plotClevEmp(dan, k = 50, ind = 2, labels = FALSE)
 2.   └─graphics::dotchart(...)
 3.     └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'satdad.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpmlbmPQ/file1ecf811a534348'
--- failed re-building ‘satdad.Rmd’

SUMMARY: processing the following file failed:
  ‘satdad.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ProjectionBasedClustering’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mo Huang <mohuangx@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SAVER-package.Rd’:
    https://doi.org/10.1038/s41592-018-0033-z
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tiago Santos <teixeiradossantos@tugraz.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Viktoriya Krakovna <vkrakovna@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Viktoriya",
                    family = "Krakovna",
                    role = c("aut", "cre"),
                    email = "vkrakovna@gmail.com")
as necessary.

The Description field contains
  (2015), <arXiv:1506.02371>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) setData.ReducedRankRegressions.Rd:14-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setData.ReducedRankRegressions.Rd:17-18: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Meiyue Wang <mwang024@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Meiyue",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "mwang024@ucr.edu"),
               person(given = "Shizhong",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Arash A. Amini <amini.aa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Arash", "A."),
                    family = "Amini",
                    role = c("aut", "cre"),
                    email = "amini.aa@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘sbmSDP-package.Rd’:
    \keyword{ 
      community detection
      stochastic block mo [TRUNCATED]
Package required but not available: ‘mice’

Package suggested but not available for checking: ‘mitml’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Frank D. Mann <frankdmann@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frank", "D."),
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "frankdmann@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lee",
                      family = "Wilkinson",
                      role = "aut",
                      email = "leland.wilkinson@gmail.com"),
               person(given = "Anushka",
                      family = "Anand",
                      role = "aut"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "cre",
                      email = "simon.urbanek@r-project.org"))
as necessary.
License stub is invalid DCF.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp2vNwC0/ltx1f178c45a020a4/drawMixture.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'gtsummary', 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Niloy Biswas <niloy_biswas@g.harvard.edu>’

The Description field contains
  <arXiv:2204.01668>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (ORCID: <https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5IwFRz/file1f27ce131df385/breaks_width.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Tingni Sun <tingni@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tingni",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "tingni@wharton.upenn.edu")
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [39s/41s] OK
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmprvm9Al/file2027225d158b35': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmprvm9Al/file2027225d158b35': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘scplot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/scanstatistics.Rcheck/00install.out’ for details.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xudong Han <hanxd1217@163.com>’

The Description field contains
  Thomas N. Kipf (2017) <arXiv:1609.02907v4>) to construct the gene-cell
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'AdaptGauss', 'mixtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Valentin",
                      family = "Rousson",
                      role = "aut",
                      email = "rousson@ifspm.unizh.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Yining Chen <y.chen101@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yining",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "y.chen101@lse.ac.uk"),
               person(given = "Richard",
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Ravi Selker <selker.ravi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Selker",
                    role = c("aut", "cre"),
                    email = "selker.ravi@gmail.com")
as necessary.
checkRd: (-1) scatterD3.Rd:209: Lost braces; missing escapes or markup?
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       | ^
checkRd: (-1) scatterD3.Rd:209: Lost braces
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       |                                              ^
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Amit Frishberg <amfrishberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amit",
                      family = "Frishberg",
                      role = c("aut", "cre"),
                      email = "amfrishberg@gmail.com"),
               person(given = "Naama",
                      family = "Peshes-Yaloz",
                      role = "aut"),
               person(given = "Irit",
                      family = "Gat-Viks",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blair Drummond <blair.robert.drummond@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Blair",
                      family = "Drummomd",
                      role = "aut"),
               person(given = "Mathieu",
                      family = "Dextraze",
                      role = "ctb"),
               person(given = "Blair",
                      family = "Drummond",
                      role = "cre",
                      email = "blair.robert.drummond@gmail.com"))
as necessary.

Found the following (possibly) invalid URLs:
  URL: ihttps://qub.mandelics.com/
    From: inst/doc/scbursts.pdf
    Message: Invalid URI scheme

Found the following (possibly) invalid file URI:
  URI: :https://github.com/DCPROGS.pdf
    From: inst/doc/scbursts.pdf
Maintainer: ‘Xin Shao<xin_shao@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xin",
                    family = "Shao",
                    role = c("aut", "cre"),
                    email = "xin_shao@zju.edu.cn")
as necessary.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alicja Wolny-Dominiak<woali@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Adamic",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "woali@ue.katowice.pl"))
as necessary.
Maintainer: ‘"Yonas Ghebremichael Weldeselassie" <yonas.weldeselassie@open.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yonas", "Ghebremichael"),
                      family = "Weldeselassie",
                      role = "aut"),
               person(given = "Heather",
                      family = "Whitaker",
                      role = "aut"),
               person(given = "Paddy",
                      family = "Farrington",
                      role = "aut"),
               person(given = c("\"Yonas", "Ghebremichael"),
                      family = "Weldeselassie\"",
                      role = "cre",
                      email = "yonas.weldeselassie@open.ac.uk"))
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggspatial’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Seurat', 'glmGamPoi'

Packages suggested but not available for checking:
  'plotly', 'scater', 'scran', 'spacexr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Seurat’

Packages suggested but not available for checking:
  'biomaRt', 'GOSemSim', 'ontoProc', 'plotly', 'rrvgo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘broom.mixed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCFMonitor.Rcheck/00install.out’ for details.
Maintainer: ‘Joseph Cohen <joseph.cohen@qc.cuny.edu>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmptM39mb/Rf1ee3f56343dee4': No space left on device
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Seurat', 'UCell'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Seurat', 'biomaRt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daisuke Murakami <dmuraka@ism.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daisuke",
                      family = "Murakami",
                      role = c("cre", "aut"),
                      email = "dmuraka@ism.ac.jp"),
               person(given = "Narumasa",
                      family = "Tsutsumida",
                      role = "ctb"),
               person(given = "Takahiro",
                      family = "Yoshida",
                      role = "ctb"),
               person(given = "Tomoki",
                      family = "Nakaya",
                      role = "ctb"),
               person(given = "Lu",
                      family = "Binbin",
                      role = "ctb"))
as necessary.

The Description field contains
  <arXiv:1905.00266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jeffrey A. Dahlke <jeff.dahlke.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "A."),
                    family = "Dahlke",
                    role = c("aut", "cre"),
                    email = "jeff.dahlke.phd@gmail.com")
as necessary.
Packages required but not available: 'tidygraph', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SchoolDataIT.Rcheck/00install.out’ for details.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpOMRoxh/Rf1f10a1b7f8664': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/scicomptools.Rcheck/00install.out’ for details.
Maintainer: ‘Nathan Taback <nathan.taback@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nathan",
                    family = "Taback",
                    role = c("aut", "cre"),
                    email = "nathan.taback@utoronto.ca")
as necessary.
Maintainer: ‘Ashraf Uddin <mdaakib18@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashraf",
                    family = "Uddin",
                    role = c("aut", "cre"),
                    email = "mdaakib18@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpAdEBly/Rf1f38b12f4905d0': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpB8WYFr/file1fde7d34eae6c3': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpB8WYFr/file1fde7d34eae6c3': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘recipes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘scindex-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpF8xLWz/file1f38925bc82226', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpF8xLWz/file1f38925bc82226/scindex.R': No such file or directory
Execution halted
 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Maintainer: ‘Manuel Morales <Manuel.A.Morales@williams.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Manuel",
                      family = "Morales",
                      role = c("aut", "cre"),
                      email = "mmorales@williams.edu"),
               person(given = c("with", "code", "developed", "by", "the", "R", "Development", "Core"),
                      family = "Team",
                      role = "aut"),
               person(given = c("with", "general", "advice", "from", "the", "R-help", "listserv"),
                      family = "community",
                      role = "aut"),
               person(given = c("especially", "Duncan"),
                      family = "Murdoch.",
                      role = "aut"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/sciRmdTheme
which should likely be
  https://github.com/oobianom/sciRmdTheme/issues
instead.
Maintainer: ‘Duc Tran <duct@nevada.unr.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'ggtree', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sva', 'ggpubr', 'msigdbr'

Packages suggested but not available for checking:
  'simplifyEnrichment', 'WGCNA', 'AnnotationDbi', 'GO.db', 'conos'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘sClust-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp2m9zid/file1da2fe7999c8b9/ShiMalikSC.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Packages required but not available: 'Seurat', 'GSVA', 'gprofiler2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'alakazam', 'shazam'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Note: skipping ‘SCOPRO_vignette.Rmd’ due to unavailable dependencies:
  'CIARA'
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wenlong Ren <wenlongren@ntu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wenlong",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "wenlongren@ntu.edu.cn")
as necessary.
Maintainer: ‘Shota Ochi <shotaochi1990@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecgca102.Rd’:
    https://doi.org/10.13026/C2X30H
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jaejoon",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "jjsong2@mdanderson.org")
as necessary.
Package required but not available: ‘refund’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpKDa4MI/file1f53ce13727dc6', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpKDa4MI/file1f53ce13727dc6/aerr_sf.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Ed Merkle <merklee@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ed",
                    family = "Merkle",
                    role = c("aut", "cre"),
                    email = "merklee@missouri.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Debsurya De <debsurya001@gmail.com>’

The Description field contains
  <arXiv:1909.04024> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chakkrit Tantithamthavorn <kla@chakkrit.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chakkrit",
                    family = "Tantithamthavorn",
                    role = c("aut", "cre"),
                    email = "kla@chakkrit.com")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniela M. Witten <dwitten@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = c("aut", "cre"),
                      email = "dwitten@uw.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Checking relative paths failed with message:
  inferior call failed
Package required but not available: ‘missMDA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggraph', 'Seurat', 'tidygraph'

Packages suggested but not available for checking:
  'AnnotationDbi', 'org.Mm.eg.db', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marlene Marchena <marchenamarlene@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Marchena",
                    role = c("aut", "cre"),
                    email = "marchenamarlene@gmail.com")
as necessary.

The Description field contains
  <arXiv:1009.3977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Peidli <stefanpeidli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefan",
                    family = "Peidli",
                    role = c("aut", "cre"),
                    email = "stefanpeidli@gmail.com")
as necessary.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Qtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘scan’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cicero’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Seurat', 'WGCNA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘scquantum-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Maintainer: ‘Julien Boelaert <jubo.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Boelaert",
                    role = c("aut", "cre"),
                    email = "jubo.stats@gmail.com")
as necessary.
Maintainer: ‘Qi Zhang <karlmzhang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pengsheng",
                      family = "Ji",
                      role = "aut"),
               person(given = "Jiashun",
                      family = "Jin",
                      role = "aut"),
               person(given = "Qi",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "karlmzhang@gmail.com"))
as necessary.
Maintainer: ‘Elad Romanov <elad.romanov@gmail.com>’

The Description field contains
  appear). <arXiv:2009.12297>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Toshikazu Matsumura <matutosi@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘save_bmp.Rd’, ‘save_clipboard_image.Rd’, ‘screenshot.Rd’, ‘screenshot_exists.Rd’
Maintainer: ‘Sagie Gur-Ari <sagiegurari@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: docs/api.md
    From: README.md
  URI: .github/CONTRIBUTING.md
    From: README.md
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpVhStPH/Rf1f5d5342e3cc55': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) scriptloc.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get location of script in a fashion analagous to ${BASH_SOURCE[0]}}
       |                                                          ^
Maintainer: ‘Raphaël Bonnet <raphael.bonnet@univ-cotedazur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Raphael",
                      family = "Bonnet",
                      role = c("aut", "cre")),
               person(given = "Marion",
                      family = "Guernoté",
                      role = "ctb"),
               person(given = "Terry",
                      family = "Gouin",
                      role = "ctb"),
               person(given = "Maxime",
                      family = "Laurens",
                      role = "ctb"),
               person(given = "Thibault",
                      family = "Meekel",
                      role = "ctb"),
               person(given = "Jean-François",
                      family = "Peyron",
                      role = c("aut", "ths")),
               person(given = "Raphaël",
                      family = "Bonnet",
                      role = "cre",
                      email = "raphael.bonnet@univ-cotedazur.fr"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Packages required but not available: 'Seurat', 'clustree'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Conor Neilson <condwanaland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conor",
                    family = "Neilson",
                    role = c("aut", "cre"),
                    email = "condwanaland@gmail.com")
as necessary.
Running massageExamples to create ‘scrobbler-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpTiDOit/file1f786020b570f1', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpTiDOit/file1f786020b570f1/download_scrobbles.R': No such file or directory
Execution halted
 NONE
install log ‘’ does not exist
Packages required but not available: 'caret', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/scrutiny.Rcheck/00install.out’ for details.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘spatialTIME’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Osorio <dcosorioh@utexas.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCtools.Rcheck/00install.out’ for details.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John R. Ortiz <jrortizt@unal.edu.co>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘plot.Rd’:
    https://doi.org/10.25573/data.13118426.v2
Packages required but not available: 'DiagrammeR', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sdcLog.Rcheck/00install.out’ for details.
Maintainer: ‘Matthias Templ <matthias.templ@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'car', 'haven', 'VIM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) sdc_extabs.Rd:59: Lost braces
    59 | (including ]code{forcelist} variables) that can be used to form tables.}
       |                 ^
install log ‘’ does not exist
Package required but not available: ‘deaR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>’

The BugReports field in DESCRIPTION has
  https://github.com/egarpor/sdetorus
which should likely be
  https://github.com/egarpor/sdetorus/issues
instead.
Maintainer: ‘Takahiro Shimada <taka.shimada@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takahiro",
                    family = "Shimada",
                    role = c("aut", "cre"),
                    email = "taka.shimada@gmail.com")
as necessary.
Packages required but not available: 'ggmap', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DiagrammeR', 'ggraph', 'fda'

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fmesher’

Packages suggested but not available for checking: 'DHARMa', 'glmmTMB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) hyperpar.Rd:17: Lost braces
    17 | \item{c}{denotes the expected range of eqn{f} .}
       |                                           ^
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp7wTxiZ/file1ffa11582b8be3': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp7wTxiZ/file1ffa11582b8be3': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sdstudio.Rcheck/00install.out’ for details.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6UP0yo/file1ff13d55d04673/check_tr_dup.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sdtm.oak.Rcheck/00install.out’ for details.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ali Uenlue <ali.uenlue@icloud.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SDT-package.Rd’:
    https://doi.org/10.1007/978-1-4899-2271-7
    https://doi.org/10.1207/S15327965PLI1104_01
    https://doi.org/10.3389/fpsyg.2016.00272
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘internalization.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘plot.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘plot.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘print.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘print.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘simplex.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘summary.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut"))
as necessary.
Maintainer: ‘Jocelyn Chi <jocetchi@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Hsiao, Lin, Wang, Lee, Lu, and Tzeng. (2021+) <arXiv:2105.03228>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘sfnetworks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wei Qian <weiqian@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "weiqian@stat.umn.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpJblPlB/file204eb55623d1b3.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQt0h6Z/file20512b25b8ced0': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpQt0h6Z/file20512b25b8ced0': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Package required but not available: ‘crypto2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘series.R’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(seasonal)
  > 
  > test_check("seasonal")
  x13binary is working properly
  seasonal is using the X-13 binaries provided by x13binary
  X-13 installation test:
    - X13_PATH correctly specified
    - binary executable file found
    - command line test run successful
    - command line test produced HTML output
    - seasonal test run successful
  Congratulations! 'seasonal' should work fine!
  Saving _problems/test-cran-43.R
  [ FAIL 1 | WARN 1 | SKIP 6 | PASS 8 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-all.R:8:1', 'test-ext_ser_call.R:1:1',
    'test-ext_ser_call.R:18:1', 'test-issues.R:1:1', 'test-multiple.R:1:1',
    'test-parse_spc.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-cran.R:43:3'): Basic examples of seasonal work through ─────────
  Error: X-13 has returned a non-zero exist status, which means that the current spec file cannot be processed for an unknown reason.
  Backtrace:
      ▆
   1. └─seasonal::seas(AirPassengers, force.type = "denton") at test-cran.R:43:3
   2.   └─seasonal:::seas_list(...)
   3.     └─seasonal:::x13_run(file = iofile, out = out)
  
  [ FAIL 1 | WARN 1 | SKIP 6 | PASS 8 ]
  Error:
  ! Test failures.
  Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SeaSondeR.Rcheck/00install.out’ for details.
Maintainer: ‘Isabella Bitetto <bitetto@coispa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabella",
                      family = "Bitetto",
                      role = c("aut", "cre"),
                      email = "bitetto@coispa.it",
                      comment = "COISPA"),
               person(given = "Loretta",
                      family = "Malvarosa",
                      role = "aut",
                      comment = "NISEA"),
               person(given = c("Maria", "Teresa"),
                      family = "Spedicato",
                      role = "aut",
                      comment = "COISPA"),
               person(given = "Ralf",
                      family = "Doering",
                      role = "aut",
                      comment = "THUENEN"),
               person(given = "Joerg",
                      family = "Berkenhagen",
                      role = "aut",
                      comment = "THUENEN"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.

The Description field contains
  <arXiv:1105.2334v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Danielle Quinn <danielle.quinn@mun.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danielle",
                    family = "Quinn",
                    role = c("aut", "cre"),
                    email = "danielle.quinn@mun.ca")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/secrettext.Rcheck/00install.out’ for details.
Running examples in ‘secrlinear-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: linearkd
> ### Title: Kernel Density on Linear Network
> ### Aliases: linearkd
> 
> ### ** Examples
> 
> 
> # simulate some points
> set.seed(123)
> pop <- sim.linearpopn(glymemask, N = 40)
> 
> # restrict edges to overcome a glitch in this particular linearmask
> 
> tmp <- linearkd(X = pop, linmask = glymemask, sigma = 30, 
+     which = 1:325, finespacing = FALSE)
Error in linearkd(X = pop, linmask = glymemask, sigma = 30, which = 1:325,  : 
  linearkd requires package spatstat
Execution halted
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error: inferior call failed
Execution halted
Maintainer: ‘Jae Keun Yoo <peter.yoo@ewha.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae", "Keun"),
                      family = "Yoo",
                      role = c("aut", "cre"),
                      email = "peter.yoo@ewha.ac.kr"),
               person(given = "Bo-Young",
                      family = "Kim",
                      role = "aut"))
as necessary.
Package required but not available: ‘CCA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpD8gPVK/Rd2pdf1fa7c44071bc14/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/seekr.Rcheck/00install.out’ for details.
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SE.EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘SE.EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘SE.EQ.dissolution.profiles.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Packages required but not available: 'demography', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jerome Sueur <sueur@mnhn.fr>’

Found the following (possibly) invalid file URIs:
  URI: Sound analysis and synthesis with R.pdf
    From: inst/doc/seewave_analysis.pdf
  URI: publisher website.pdf
    From: inst/doc/seewave_analysis.pdf
Fatal error: cannot create 'R_TempDir'
Error in bzfile(file, "wb") : cannot open the connection
  Calls: <Anonymous> -> resaveRdaFiles -> save -> bzfile
  In addition: Warning message:
  In bzfile(file, "wb") :
    cannot open bzip2-ed file '/tmp/RtmppFNjiD/file2038562601d900', probable reason 'No space left on device'
  Execution halted
Running massageExamples to create ‘seewave-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpd19lT9/file20508a636dfaf9/corenv.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ............Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp0o3Vxw/ltx206b315148bd42/songmeterdiag.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Eleni Ioanna Delatola <eldelatola@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eleni", "Ioanna"),
                      family = "Delatola",
                      role = c("aut", "cre"),
                      email = "eldelatola@yahoo.gr"),
               person(given = "Emilie",
                      family = "Lebarbier",
                      role = "aut"),
               person(given = "Tristan",
                      family = "Mary-Huard",
                      role = "aut"),
               person(given = "Francois",
                      family = "Radvanyi",
                      role = "aut"),
               person(given = "Stephane",
                      family = "Robin",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Wong",
                      role = "aut"))
as necessary.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘segmented-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpx2Hyy2/file2087845c49970e/points.segmented.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Rainer Machne <raim@tbi.univie.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Machne",
                      role = c("aut", "cre"),
                      email = "raim@tbi.univie.ac.at"),
               person(given = c("Douglas", "B."),
                      family = "Murray",
                      role = "aut"),
               person(given = c("Peter", "F."),
                      family = "Stadler",
                      role = "aut"))
as necessary.
Maintainer: ‘Thales Mello <thalesmello@gmail.com>’

The Description field contains
  Leonardi (2018) <arXiv:1501.01756>. The Berlin weather sample dataset
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michelle Picoli <mipicoli@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Danilo C Vieira <vieiradc@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Danilo", "C"),
                      family = "Vieira",
                      role = c("aut", "cre"),
                      email = "vieiradc@yahoo.com.br"),
               person(given = "Gustavo",
                      family = "Fonseca",
                      role = "aut",
                      email = "gfonseca.unifesp@gmail.com"),
               person(given = c("Fabio", "Cop"),
                      family = "Ferreira",
                      role = "aut",
                      email = "fabiocferreira.unifesp@gmail.com"),
               person(given = c("with", "contributions", "from", "Marco", "Colossi"),
                      family = "Brustolin.",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Running examples in ‘segtest-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: polymapr_test
> ### Title: Run segregation distortion tests as implemented in the polymapR
> ###   package.
> ### Aliases: polymapr_test
> 
> ### ** Examples
> 
> g1 <- 0
> g2 <- 1
> x <- c(4, 16, 0, 0, 0)
> polymapr_test(x = x, g1 = g1, g2 = g2, type = "segtest")
$p_value
[1] 0.007290358

$best_fit
[1] 5.000000e-01 5.000000e-01 4.440892e-17 4.440892e-17 4.440892e-17

$frq_invalid
[1] 0

$p_invalid
[1] 1

> polymapr_test(x = x, g1 = g1, g2 = g2, type = "polymapR")
Error in polymapr_test(x = x, g1 = g1, g2 = g2, type = "polymapR") : 
  polymapr_test:
polymapR needs to be installed to use type = 'polymapR'.
You can install it with install.packages('polymapR')
Execution halted
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpJocNnJ/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp7cDkBo/file20ccd64bad0875': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp7cDkBo/file20ccd64bad0875': No such file or directory
Error in file(con, "r") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Sam Allen <sam.allen@stat.math.ethz.ch>’

Found the following (possibly) invalid file URIs:
  URI: CRAN.R-project.org/package=SEI
    From: inst/doc/SEI_vignette.pdf
  URI: github.com/noeliaof/SEI
    From: inst/doc/SEI_vignette.pdf
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Qingyuan Zhao <qingyzhao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hera",
                      family = "He",
                      role = "aut"),
               person(given = "Murat",
                      family = "Erdogdu",
                      role = "aut"),
               person(given = "Qingyuan",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "qingyzhao@gmail.com"))
as necessary.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Heewon Jeon <madjakarta@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Heewon",
                    family = "Jeon",
                    role = c("aut", "cre"),
                    email = "madjakarta@gmail.com")
as necessary.

The Description field contains
  Sejong(http://www.sejong.or.kr/) corpus and
  Hannanum(http://semanticweb.kaist.ac.kr/home/index.php/HanNanum)
Please enclose URLs in angle brackets (<...>).
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘selcorr.R’
Maintainer: ‘Xuefei Mi <mi_xue_fei@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuefei",
                      family = "Mi",
                      role = c("aut", "cre"),
                      email = "mi_xue_fei@hotmail.com"),
               person(given = "Jose",
                      family = "Marulanda",
                      role = "aut"),
               person(given = c("H.", "Friedrich"),
                      family = "Utz",
                      role = "aut"),
               person(given = c("Albrecht", "E."),
                      family = "Melchinger",
                      role = "aut",
                      comment = "Project contact person: Melchinger@uni-hohenheim.de"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp4lpZ61/file20170321231c1f/multistageoptimum.searchThreeS.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘selection.index-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp954l61/file204fd15ab5dfd4/mrlpsi.R': No space left on device
Execution halted
 NONE
Packages required but not available: 'spatstat', 'ecespa'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Cyclops', 'DatabaseConnector', 'Andromeda', 'ResultModelManager'

Package suggested but not available for checking: ‘Eunomia’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jie Qiao <qiaojie2004@vip.qq.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjoern",
                    family = "Bornkamp",
                    role = c("aut", "cre"),
                    email = "bbnkmp@mail.de")
as necessary.
Packages required but not available: 'textstem', 'textclean'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SEMgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘piecewiseSEM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘predicting-effects.Rmd’ using rmarkdown
--- finished re-building ‘predicting-effects.Rmd’

--- re-building ‘semEff.Rmd’ using rmarkdown

Quitting from semEff.Rmd:22-26 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'piecewiseSEM'
---
Backtrace:
    ▆
 1. └─utils::data(keeley, package = "piecewiseSEM")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'semEff.Rmd' failed with diagnostics:
there is no package called 'piecewiseSEM'
--- failed re-building ‘semEff.Rmd’

SUMMARY: processing the following file failed:
  ‘semEff.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'graphite', 'AnnotationDbi'

Package suggested but not available for checking: ‘org.Hs.eg.db’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘semhelpinghands.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp6qETVu/Rf20e2bf6a84228': No space left on device

Quitting from semhelpinghands.Rmd:95-98 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from semhelpinghands.Rmd:95-98 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'semhelpinghands.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘semhelpinghands.Rmd’

--- re-building ‘standardizedSolution_boot_ci.Rmd’ using rmarkdown
--- finished re-building ‘standardizedSolution_boot_ci.Rmd’

SUMMARY: processing the following file failed:
  ‘semhelpinghands.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marko",
                    family = "Robnik-Sikonja",
                    role = c("aut", "cre"),
                    email = "marko.robnik@fri.uni-lj.si")
as necessary.
Packages required but not available: 'CORElearn', 'StatMatch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yiran Zhang <yiz038@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yiran",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "yiz038@health.ucsd.edu")
as necessary.

The Description field contains
  Zhang, Y. and Xu, R. (2022) <arXiv:2204.10426>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee15239@gmail.com"),
               person(given = "Catherine",
                      family = "Lee",
                      role = "aut"),
               person(given = "Danilo",
                      family = "Alvares",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Haneuse",
                      role = "aut"))
as necessary.
Maintainer: ‘Agnieszka Listwon-Krol <krol@lunenfeld.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Agnieszka",
                      family = "Listwon-Krol",
                      role = c("aut", "cre"),
                      email = "krol@lunenfeld.ca"),
               person(given = "Philippe",
                      family = "Saint-Pierre",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘seminr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

Packages which this enhances but not available for checking:
  'semPlot', 'seminrExtras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [8s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(semlbci)
  > 
  > test_check("semlbci")
  Starting 2 test processes.
  Error in file(file, mode) : cannot open the connection
  Calls: test_check ... FUN -> <Anonymous> -> rs_call -> save_function_to_temp
  Execution halted
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/semnar.Rcheck/00install.out’ for details.
Packages required but not available: 'qgraph', 'car'

Package suggested but not available for checking: ‘NetworkToolbox’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpWcQBFh/file208c5e6d842cd8/tsls.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘semTools-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp8130n8/file20febe4a7a92d7/mardiaSkew.R': No space left on device
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/semtree.Rcheck/00install.out’ for details.
Packages required but not available:
  'DescTools', 'Hmisc', 'haven', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpObfZFF/Rd2pdf200c0f1b7b2b7/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "R."),
                      family = "Rosenbaum",
                      role = c("aut", "cre"),
                      email = "rosenbaum@wharton.upenn.edu"),
               person(given = c("Dylan", "S."),
                      family = "Small",
                      role = "aut"))
as necessary.
Maintainer: ‘Dylan Small <dsmall@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dylan",
                    family = "Small",
                    role = c("aut", "cre"),
                    email = "dsmall@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Running massageExamples to create ‘sensitivitymult-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpxHFS1x/file2052e31653698/senm.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Running massageExamples to create ‘sensitivitymv-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpikD7Zc/file2051885bb2856a/senmv.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRcMYPO/file205297341e7dfc': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpRcMYPO/file205297341e7dfc': No such file or directory
Error in file(con, "r") : cannot open the connection
No examples, no tests, no vignettes
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Ibtihel Rebhi <ibtihel.rebhi@enit.utm.tn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ibtihel",
                      family = "Rebhi",
                      role = c("aut", "cre"),
                      email = "ibtihel.rebhi@enit.utm.tn"),
               person(given = "Dhafer",
                      family = "Malouche",
                      role = "ctb"))
as necessary.
Packages required but not available:
  'doBy', 'FactoMineR', 'factoextra', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brian C. Franczak <bfrancza@math.mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cre"),
                      email = "bfrancza@math.mcmaster.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Maintainer: ‘Kjetil B Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kjetil", "B"),
                    family = "Halvorsen",
                    role = c("aut", "cre"),
                    email = "kjetil1001@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘E1.19.Rd’:
    \concept{Data on Book Prices, Pages and Type of Bi [TRUNCATED]
  File ‘E2.9.Rd’:
    \concept{Data on Capital, Labour and Value Added f [TRUNCATED]
  File ‘E4.11.Rd’:
    \concept{ Data on Cost of Repairing Starters, Ring [TRUNCATED]
  File ‘E7.2.Rd’:
    \concept{Prices of Crude Oil, Natural Gas, Bitumin [TRUNCATED]
  File ‘E9.3.Rd’:
    \concept{ Areas, lengths and widths of rectangles  [TRUNCATED]
  File ‘E9.8.Rd’:
    \concept{ Data on monthly rent, annual income and  [TRUNCATED]
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpXp55xa/Rf20886b2f4b28e3': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpGvBcSw/Rd2pdf2009b47e015257/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'lexicon', 'textclean'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘lexicon’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpqzBtPh/file20eb5335426df9/mergeTopics.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running examples in ‘sentopics-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.sentopicmodel
> ### Title: Plot a topic model using Plotly
> ### Aliases: plot.sentopicmodel
> 
> ### ** Examples
> 
> lda <- LDA(ECB_press_conferences_tokens)
> lda <- fit(lda, 100)
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
> plot(lda, nWords = 5)
Error in plot.sentopicmodel(lda, nWords = 5) : 
  Suggested packages are missing for the plot.sentopicmodel function.
Please install first the following packages: plotly.
Install command: install.packages('plotly')
Calls: plot -> plot.sentopicmodel
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
LDAvis 6.236  0.034   3.687
Maintainer: ‘Brian Greenhill <bgreenhill@albany.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "D."),
                      family = "Greenhill",
                      role = "aut"),
               person(given = c("Michael", "D."),
                      family = "Ward",
                      role = "aut"),
               person(given = "Audrey",
                      family = "Sacks",
                      role = "aut"),
               person(given = "Brian",
                      family = "Greenhill",
                      role = "cre",
                      email = "bgreenhill@albany.edu"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lewis A. Jones <LewisA.Jones@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘SepTest-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_stDPP
> ### Title: Plot spatio-temporal determinantal point process (DPP)
> ###   realizations
> ### Aliases: plot_stDPP
> 
> ### ** Examples
> 
> 
> # Simulate a stationary separable Matérn ST-DPP
> sim <- rstDPP(
+   mode     = "stationary",
+   model    = "S",
+   spectral = "matern",
+   alpha_s  = 10,
+   alpha_t  = 4.7,
+   nu       = 2,
+   eps      = 1,
+   lambda_max = 70,
+   grid_size  = 1.5
+ )
Error in rstDPP(mode = "stationary", model = "S", spectral = "matern",  : 
  Package 'spatstat' is required.
Execution halted
find_possible_epitopes_inner: no visible global function definition for
  ‘stringDist’
Undefined global functions or variables:
  stringDist
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpJkCUDQ/Rf206f137a3f9397': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘ggseqplot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mingli Lei<leimingli2013@sjtu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingli",
                      family = "Lei",
                      role = c("aut", "cre"),
                      email = "leimingli2013@sjtu.edu.cn"),
               person(given = "Jia",
                      family = "Xu",
                      role = "aut"),
               person(given = "Li-Ching",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lily",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jing",
                      family = "Li",
                      role = "aut"))
as necessary.
Output from running autoreconf:
  autom4te: error: cannot open /tmp/arpEY43a/am4tHBwErK/traces.m4: No space left on device
  aclocal: error: /usr/bin/autom4te failed with exit status: 1
  autoreconf: error: aclocal failed with exit status: 1
Running massageExamples to create ‘seqminer-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpDDKvAm/file208bb14bc838eb/tabix.createIndex.meta.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Hui Zheng <hzheng1@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "A"),
                      family = "Schoenfeld",
                      role = "aut"),
               person(given = "Hui",
                      family = "Zheng",
                      role = c("aut", "cre"),
                      email = "hzheng1@mgh.harvard.edu"))
as necessary.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘PedComp.Rmd’ using rmarkdown
--- finished re-building ‘PedComp.Rmd’

Fatal error: cannot create 'R_TempDir'
--- re-building ‘vignette-age.Rmd’ using rmarkdown
Warning in file(con, "w") :
  cannot open file '/tmp/RtmpmtYKdr/rmarkdown-str2114c356a4cbee.html': No space left on device
Error: processing vignette 'vignette-age.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘vignette-age.Rmd’

--- re-building ‘vignette-main.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpVkIUuP/Rf212b1f612ef169': No space left on device

Quitting from vignette-main.Rmd:1799-1808 [PedComp-ex1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from vignette-main.Rmd:1799-1808 [PedComp-ex1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'vignette-main.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘vignette-main.Rmd’

--- re-building ‘flowchart.pdf.asis’ using asis
--- finished re-building ‘flowchart.pdf.asis’

--- re-building ‘vignette_mtDNA.pdf.asis’ using asis
--- finished re-building ‘vignette_mtDNA.pdf.asis’

SUMMARY: processing the following files failed:
  ‘quick_start_example1.rmd’ ‘vignette-age.Rmd’ ‘vignette-main.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'DHARMa', 'broom.mixed'

Package suggested but not available for checking: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Seilmayer <martin.seilmayer@dhsn.de>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Edward Schuberg <eschu003@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edward",
                    family = "Schuberg",
                    role = c("aut", "cre"),
                    email = "eschu003@ucr.edu")
as necessary.
Package required but not available: ‘labelled’

Packages suggested but not available for checking: 'mixtools', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggmcmc', 'serocalculator'

Packages suggested but not available for checking: 'Hmisc', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'drc', 'janitor', 'parsnip', 'workflows'

Packages suggested but not available for checking:
  'shiny.fluent', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQF41n2/file20892b2a99f77a/sst_bl_referring_domains.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Oisín Ryan <o.ryan@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oisín",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "o.ryan@uu.nl")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/ryanoisin/SEset
which should likely be
  https://github.com/ryanoisin/SEset/issues
instead.
Running examples in ‘SEset-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: network_to_SEset
> ### Title: SE-set from precision matrix
> ### Aliases: network_to_SEset
> 
> ### ** Examples
> 
> # first estimate the precision matrix
> data(riskcor)
> omega <- (qgraph::EBICglasso(riskcor, n = 69, returnAllResults = TRUE))$optwi
Error in loadNamespace(x) : there is no package called ‘qgraph’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Rakshitha Godahewa <rakshithagw@gmail.com>’

The Description field contains
  in Godahewa et al. (2022) <arXiv:2211.08661v1>. The model uses the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhi Jin <nalanchongxuan@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhi",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "nalanchongxuan@163.com"),
               person(given = "Jing",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'Seurat', 'ggalluvial'

Package suggested but not available for checking: ‘MAST’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

Packages suggested but not available for checking:
  'BPCells', 'glmGamPoi', 'MAST', 'mixtools', 'presto', 'rtracklayer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sfaendog.Rd’:
    https://doi.org/10.1016/0304-4076(87)90015-7
    https://doi.org/10.1093/ajae/aaw077
Packages required but not available: 'haven', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
Maintainer: ‘Mark Ravina <mark.ravina@austin.utexas.edu>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘mapview’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpjJymVg/file21156e3ecf2b56/hotspot_change.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Kevin Titeca <sfinxinteractomics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘broom.mixed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘spatstat.linnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mohamed Laib <laib.med@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mohamed",
                      family = "Laib",
                      role = c("aut", "cre"),
                      email = "laib.med@gmail.com"),
               person(given = "Mikhail",
                      family = "Kanevski",
                      role = "aut"))
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpFw0iAg/Rf213d933eac5cc7': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Monique Graf <monique.p.n.graf@bluewin.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monique",
                    family = "Graf",
                    role = c("aut", "cre"),
                    email = "monique.p.n.graf@bluewin.ch")
as necessary.
Package required but not available: ‘ggpubr’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Youngki Shin <shiny11@mcmaster.ca>’

The Description field contains
  <arXiv:2209.14502> "Fast Inference for Quantile Regression with Tens of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [3s/4s] NOTE
Fatal error: cannot create 'R_TempDir'

Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Gregory Vaughan <gvaughan@bentley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Vaughan",
                      role = c("aut", "cre"),
                      email = "gvaughan@bentley.edu"),
               person(given = "Kun",
                      family = "Chen",
                      role = "ctb"),
               person(given = "Jun",
                      family = "Yan",
                      role = "ctb"))
as necessary.
checkRd: (-1) bisee.Rd:127: Lost braces
   127 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) hisee.Rd:101: Lost braces
   101 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) isee.Rd:116: Lost braces
   116 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) see.Rd:98: Lost braces
    98 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "James", "J.", "Majure", "Iowa", "State"),
                      family = "University",
                      role = "aut",
                      email = "majure@iastate.edu"),
               person(given = c("R", "port", "+", "extensions", "by", "Albrecht"),
                      family = "Gebhardt",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Running examples in ‘sgeostat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.variogram
> ### Title: Plot Variogram
> ### Aliases: plot.variogram
> ### Keywords: spatial
> 
> ### ** Examples
> 
> ## Don't show: 
> # prepare variables from other example pages if they are not already there:
> if(length(ls(pat="maas.vmod"))==0){example(fit.variogram)}

ft.vrg> ## Don't show: 
ft.vrg> # prepare variables from other example pages if they are not already there:
ft.vrg> if(length(ls(pat="maas.v"))==0){example(est.variogram)}

est.vr> ## Don't show: 
est.vr> # prepare variables from other example pages if they are not already there:
est.vr> if(length(ls(pat="maas.pair"))==0){example(pair)}
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpV1J0K3/Rex20e5171a002620': No space left on device
Error in file(out, "wt") : cannot open the connection
Calls: example ... withVisible -> eval -> eval -> example -> <Anonymous> -> file
Execution halted
Maintainer: ‘Luigi Augugliaro <luigi.augugliaro@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luigi",
                    family = "Augugliaro",
                    role = c("aut", "cre"),
                    email = "luigi.augugliaro@unipa.it")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Noah Simon <nrsimon@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Noah",
                      family = "Simon",
                      role = c("aut", "cre"),
                      email = "nrsimon@uw.edu"),
               person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Balasubramanian Narasimhan <naras@stat.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Balasubramanian",
                    family = "Narasimhan",
                    role = c("aut", "cre"),
                    email = "naras@stat.stanford.edu",
                    comment = "with input from Tze Lai and Mei-Chiung Shih")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpBwHvNb/Rf20d6ee4a9cf5c8': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Thomas Vigie <vigiethomas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Vigie",
                    role = c("aut", "cre"),
                    email = "vigiethomas@gmail.com")
as necessary.
Maintainer: ‘Irene Castro Conde <irene.castro@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Irene", "Castro"),
                      family = "Conde",
                      role = c("aut", "cre"),
                      email = "irene.castro@uvigo.es"),
               person(given = c("Jacobo", "de", "Una"),
                      family = "Alvarez",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRtwjoR/file20eb62360e5d0b/plot.BH.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sgPLS.Rcheck/00install.out’ for details.
Running massageExamples to create ‘sgpv-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpgjeBmr/file20ebad5a3ff04d/fdrisk.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sgraph_utils.R’
Maintainer: ‘Massimiliano Pastore <massimiliano.pastore@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Massimiliano", "Pastore", "&", "Luigi"),
                      family = "Lombardi",
                      role = "aut"),
               person(given = "Massimiliano",
                      family = "Pastore",
                      role = "cre",
                      email = "massimiliano.pastore@unipd.it"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Carter Davis <cdavis40@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carter",
                    family = "Davis",
                    role = c("aut", "cre"),
                    email = "cdavis40@chicagobooth.edu")
as necessary.
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                   ^
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                                                                                                                                        ^
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'SHAPforxgboost', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiyue Liao <xliao@sdsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiyue",
                      family = "Liao",
                      role = c("aut", "cre"),
                      email = "xliao@sdsu.edu"),
               person(given = c("Mary", "C"),
                      family = "Meyer",
                      role = "aut"))
as necessary.
checkRd: (-1) changept.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:20-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ben Stabler <benstabler@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Stabler",
                    role = c("aut", "cre"),
                    email = "benstabler@yahoo.com")
as necessary.
checkRd: (-1) powerShape.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:32-33: Lost braces in \itemize; meant \describe ?
Running examples in ‘shapeNA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: barplot.shapeNA
> ### Title: Barplot Showcasing Missingness Proportion of the Original Data
> ### Aliases: barplot.shapeNA
> 
> ### ** Examples
> 
>     S <- toeplitz(seq(1, 0.1, length.out = 3))
>     x <- mvtnorm::rmvt(100, S, df = 5)
>     y <- mice::ampute(x, mech='MCAR')$amp
Error in loadNamespace(x) : there is no package called ‘mice’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karline",
                    family = "Soetaert",
                    role = c("aut", "cre"),
                    email = "karline.soetaert@nioz.nl")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jingyi Liang <jingyiliang19@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jingyi",
                    family = "Liang",
                    role = c("aut", "cre"),
                    email = "jingyiliang19@163.com")
as necessary.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Szymon Maksymiuk <sz.maksymiuk@gmail.com>’

The Description field contains
  Lundberg, S., et al., (2016) <arXiv:1705.07874> The SHAP method is used
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpf9gL4b/Rf2113b6603f72b9': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpeGZ9bt/file21863818653fd5/plot.individual_variable_effect.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘W.J. Braun <john.braun@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "John"),
                      family = "Braun",
                      role = "aut",
                      email = "john.braun@ubc.ca"),
               person(given = "W.J.",
                      family = "Braun",
                      role = "cre",
                      email = "john.braun@ubc.ca"))
as necessary.
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Challet",
                    role = c("aut", "cre"),
                    email = "damien.challet@gmail.com")
as necessary.

The Description field contains
  signal-to-noise ratio, for heavy-tailed data (see <arXiv:1505.01333>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: books.google.com/books
    From: inst/doc/SharpeRatio.pdf
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/Rtmp307vQd/Rf20d6577ac29117': No space left on device
Package required but not available: ‘dcmle’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rodrigo F. de Mello <mellorf@gmail.com>’

The Description field contains
  Coefficient of Supervised Learning Algorithms" <arXiv:1911.05461>; de
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Running ‘coerce.R’ [0s/1s]
  Running ‘encoding.R’ [0s/1s]
  Running ‘escape.R’ [0s/1s]
  Running ‘geometry.R’ [0s/1s]
  Running ‘types.R’ [0s/0s]
Running the tests in ‘tests/coerce.R’ failed.
Complete output:
  > library(SheetReader)
  > options(stringsAsFactors = FALSE)
  > data <- read_xlsx(system.file("extdata", "multi-test.xlsx", package = "SheetReader"), sheet="coerce", col_types=c("text", "numeric", "numeric", "date", "date", "logical", "numeric", "numeric"))
  > base_date <- as.POSIXct("1900-01-01", "UTC")
  > date1 <- as.POSIXct("2021-01-01", "UTC")
  > date2 <- as.POSIXct("2020-04-01 13:37", "UTC")
  > compare <- function(x, y) {
  + 	(length(x) == length(y)) && all((x == y) | (if(all(is.numeric(x))) (abs(x - y) < 0.0001) else FALSE) | (is.na(x) & is.na(y)))
  + }
  > stopifnot(colnames(data) == c("Text", "Integer", "Real", "Date", "DateTime", "Boolean", "Formula", "Error", "Blank"))
  > stopifnot(compare(data[, "Text"], c("Blabla", NA, "#REF!", "14", "1", "43922.567361111112", "44197", "-234.72389999999999", "29384723")))
  > stopifnot(compare(data[, "Integer"], c(29384723, NA, NA, NA, 14, 1, 43922.5674, 44197, -234.7239)))
  > stopifnot(compare(data[, "Real"], c(-234.7239, 29384723, NA, NA, NA, 14, 1, 43922.5674, 44197)))
  > # for dates here: 1 == base_date so we have to subtract 1; then due to excel stuff if <61 add +1
  > stopifnot(compare(data[, "Date"], c(date1, base_date + ((-234.7239 - 1) * 86400), base_date + ((29384723 - 2) * 86400), NA, NA, NA, base_date + ((14 - 1) * 86400), base_date + ((1 - 1) * 86400), date2)))
  > stopifnot(compare(data[, "DateTime"], c(date2, date1, base_date + ((-234.7239 - 1) * 86400), base_date + ((29384723 - 2) * 86400), NA, NA, NA, base_date + ((14 - 1) * 86400), base_date + ((1 - 1) * 86400))))
  > stopifnot(compare(data[, "Boolean"], c(TRUE, TRUE, TRUE, FALSE, TRUE, FALSE, NA, FALSE, TRUE)))
  Error: compare(data[, "Boolean"], c(TRUE, TRUE, TRUE, FALSE, TRUE, FALSE,  .... is not TRUE
  Execution halted
Packages required but not available: 'flexsurv', 'Hmisc', 'survminer'

Package suggested but not available for checking: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘geoDeltaAudit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabor Szabo <gabor.attila.szabo@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpuOpNd4/Rf21204573e5a30': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Andrew Lee <andrewl@maths.usyd.edu.au>’

The Description field contains
  Peres, Lee and Keich (2020) <arXiv:2004.07429> where it is also shown
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vincent Nijs <radiant@rady.ucsd.edu>’

Reading Rd files failed with message:
  cannot open the connection
Running massageExamples to create ‘shinyaframe-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Maintainer: ‘Swechhya Bista <swechhyabista@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Swechhya",
                    family = "Bista",
                    role = c("aut", "cre"),
                    email = "swechhyabista@gmail.com")
as necessary.
Running massageExamples to create ‘shinyauthr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpO1Qi3S/file21a0f62a93ee7e/loginUI.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘brms’

Packages suggested but not available for checking:
  'cmdstanr', 'shinystan', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpbs86ef/ltx21d2ff3d990c98/modal-gif.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Conversion of ‘NEWS.md’ failed:
pandoc: /tmp/RtmpYJhUAW/pandoc2104741c02b251.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpV3DqcC/Rf2189e758c29af': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Emi Tanaka <emi.tanaka@sydney.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emi",
                      family = "Tanaka",
                      role = c("aut", "cre"),
                      email = "emi.tanaka@sydney.edu.au"),
               person(family = "Niichan",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘destroyModule.R’ ‘makeModule.R’
Fatal error: cannot create 'R_TempDir'
Conversion of ‘NEWS.md’ failed:
pandoc: /tmp/RtmpCkvoFY/pandoc2171df465b9fdc.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmplLy03i/file211a285c4bb7a2/hostUnix.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'heatmaply', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Huseyin Yildiz <huseyinyildiz35@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Huseyin",
                    family = "Yildiz",
                    role = c("aut", "cre"),
                    email = "huseyinyildiz35@gmail.com")
as necessary.
Package required but not available: ‘difR’

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘shinyjqui-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Interactions
> ### Title: Mouse interactions
> ### Aliases: Interactions jqui_draggable jqui_droppable jqui_resizable
> ###   jqui_selectable jqui_sortable
> 
> ### ** Examples
> 
> library(shiny)
> library(highcharter)
Error in library(highcharter) : there is no package called ‘highcharter’
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown

Quitting from introduction.Rmd:19-23 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘introduction.Rmd’

--- re-building ‘orderInput.Rmd’ using rmarkdown
--- finished re-building ‘orderInput.Rmd’

--- re-building ‘save-and-restore.Rmd’ using rmarkdown
--- finished re-building ‘save-and-restore.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpf3dyJW/ltx21d37f6f69b3f2/updateKanban.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Joe Wandy <joe.wandy@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joe",
                    family = "Wandy",
                    role = c("aut", "cre"),
                    email = "joe.wandy@glasgow.ac.uk")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/shinymanager.Rcheck/00install.out’ for details.
Warning in file() :
  cannot open file '/tmp/RtmpQy5de4/Rf215e4f33e81814': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJmAqXe/ltx22657c62b2bd06/qry_row.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘plotly’

Packages suggested but not available for checking:
  'xpose', 'nlmixr2', 'nlmixr2plot', 'xpose.nlmixr2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jean Bertin <jean.bertin@mines-paris.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean",
                    family = "Bertin",
                    role = c("aut", "cre"),
                    email = "jean.bertin@mines-paris.org")
as necessary.
Packages required but not available: 'plotly', 'sparklyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fabs.Rd’
Maintainer: ‘Simon Couch <simon.couch@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'parsnip', 'plotly', 'tune'

Package suggested but not available for checking: ‘finetune’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘highcharter’

Package suggested but not available for checking: ‘cmdstanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Reneé González-Guzmán <rguzman@geociencias.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex Pickering <alexvpickering@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Pickering",
                    role = c("aut", "cre"),
                    email = "alexvpickering@gmail.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYueEO2/ltx21d35f1bf73c08/setup_payload_endpoint.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
checkRd: (-1) shiny_pivot_table.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:64: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jari Haukka <jari.haukka@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jari",
                    family = "Haukka",
                    role = c("aut", "cre"),
                    email = "jari.haukka@helsinki.fi")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSHJaDi/file21d3993e7be9b1': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpSHJaDi/file21d3993e7be9b1': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘sizeGrowthRatio.Rd’, ‘sliderInput.Rd’, ‘snapshotExclude.Rd’, ‘snapshotPreprocessInput.Rd’, ‘snapshotPreprocessOutput.Rd’, ‘splitLayout.Rd’, ‘stacktrace.Rd’, ‘stopApp.Rd’, ‘submitButton.Rd’, ‘tabPanel.Rd’, ‘tabsetPanel.Rd’, ‘testServer.Rd’, ‘textAreaInput.Rd’, ‘textInput.Rd’, ‘textOutput.Rd’, ‘updateCheckboxInput.Rd’, ‘updateDateInput.Rd’, ‘updateDateRangeInput.Rd’, ‘updateNumericInput.Rd’, ‘updateSelectInput.Rd’, ‘updateSliderInput.Rd’, ‘updateTabsetPanel.Rd’, ‘updateTextAreaInput.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpMMggZd/file223bcb744ae0e5': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpMMggZd/file223bcb744ae0e5': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Packages required but not available: 'recipes', 'esquisse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jeff Allen <jeff@trestletech.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trestle",
                      family = "Technology",
                      role = "aut"),
               person(family = "LLC.",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Allen",
                      role = "cre",
                      email = "jeff@trestletech.com"))
as necessary.
Packages required but not available: 'caret', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/shinyscholar.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running massageExamples to create ‘shinySelect-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpUvVu8d/file21804255afb5de/HTMLchoices.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Package required but not available: ‘threejs’

Packages suggested but not available for checking: 'cmdstanr', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error: inferior call failed
Execution halted
checkRd: (-1) run_shinytitle_example.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) run_shinytitle_example.Rd:19: Lost braces in \itemize; meant \describe ?
Checking relative paths failed with message:
  inferior call failed
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpoD0CCd/file21a0d21781861f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpoD0CCd/file21a0d21781861f': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Papa",
                      role = "aut"),
               person(given = "Tim",
                      family = "Ferrell",
                      role = "aut"),
               person(given = "Hans",
                      family = "Fjällemark",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"))
as necessary.
Package required but not available: ‘ggspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Maintainer: ‘José Carlos Del Valle <jcval94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("José", "Carlos", "Del"),
                    family = "Valle",
                    role = c("aut", "cre"),
                    email = "jcval94@gmail.com")
as necessary.
Maintainer: ‘Daniel Wollschlaeger <dwoll@kuci.org>’

Found the following (possibly) invalid file URI:
  URI: dwoll@kuci.org
    From: inst/doc/shotGroups.pdf
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "fonts.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Encountered the following conversion/validation errors:
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
Maintainer: ‘Binbin Lu <binbinlu@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Binbin",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "binbinlu@whu.edu.cn")
as necessary.
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carlos Mercado <carlos.mercado@flipsidecrypto.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Mercado",
                    role = c("aut", "cre"),
                    email = "carlos.mercado@flipsidecrypto.com")
as necessary.
Maintainer: ‘Kyle Caudle <kyle.caudle@sdsmt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyle",
                    family = "Caudle",
                    role = c("aut", "cre"),
                    email = "kyle.caudle@sdsmt.edu")
as necessary.
Maintainer: ‘Yuval Benjamini <yuvalbenj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuval",
                    family = "Benjamini",
                    role = c("aut", "cre"),
                    email = "yuvalbenj@gmail.com")
as necessary.
Maintainer: ‘Siddhanta Phuyal <siddhantaphuyal7159@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Siddhanta", "Phuyal", "Jyotirmoy", "Sarkar", "<jsarkar@iupui.edu>", "Mamunur", "Rashid"),
                      family = "<mrashid@depauw.edu>",
                      role = "aut",
                      email = "mrashid@depauw.edu"),
               person(given = "Siddhanta",
                      family = "Phuyal",
                      role = "cre",
                      email = "siddhantaphuyal7159@gmail.com"))
as necessary.
checkRd: (-1) shutterplot.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.'
       |                       ^
Packages required but not available: 'plotly', 'ShinyItemAnalysis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpjGYDFe/file22374c3bf0a6ce': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpjGYDFe/file22374c3bf0a6ce': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'doBy', 'fda', 'StatMatch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marie-Karelle Riviere <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marie-Karelle",
                    family = "Riviere",
                    role = c("aut", "cre"),
                    email = "eldamjh@gmail.com")
as necessary.
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Noé Palmerin  <sie@banxico.org.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("DGIE", "-", "Banco"),
                      family = "de México",
                      role = "aut"),
               person(given = "Noé",
                      family = "Palmerin",
                      role = "cre",
                      email = "sie@banxico.org.mx"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ARD_script_structure.Rmd’ using rmarkdown
--- finished re-building ‘ARD_script_structure.Rmd’

--- re-building ‘Getting_started.Rmd’ using rmarkdown

Quitting from Getting_started.Rmd:78-88 [run ARD_xxx]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `cardx::ard_stats_aov()`:
! The package "broom.helpers" (>= 1.17.0) is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Getting_started.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.17.0) is required.
--- failed re-building ‘Getting_started.Rmd’

--- re-building ‘apply-ARD.Rmd’ using rmarkdown
--- finished re-building ‘apply-ARD.Rmd’

--- re-building ‘using-cards.Rmd’ using rmarkdown
--- finished re-building ‘using-cards.Rmd’

SUMMARY: processing the following file failed:
  ‘Getting_started.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ruiyan Luo <rluo@gsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Ruiyan",
                      role = c("aut", "cre"),
                      email = "rluo@gsu.edu"),
               person(given = "Xin",
                      family = "Qi",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggpubr', 'np'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tianyu Zhang <tianyuz3@andrew.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianyu",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "tianyuz3@andrew.cmu.edu")
as necessary.

The Description field contains
  methods can be found in: <arXiv:2206.02994>
  <arXiv:2104.00846><arXiv:2310.12140>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Sieve-package.Rd’:
    \keyword{sieve estimation; estimation using orthog [TRUNCATED]
Maintainer: ‘Petr Matousu <pmatousu@more-praha.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Matousu",
                    role = c("aut", "cre"),
                    email = "pmatousu@more-praha.cz")
as necessary.
checkRd: (-1) drr.Rd:36: Lost braces; missing escapes or markup?
    36 |   \code{drr} {is Rosin - Rammler probability density function}\cr
       |              ^
checkRd: (-1) drr.Rd:37: Lost braces; missing escapes or markup?
    37 |   \code{urr} {is Rosin - Rammler cumulative distribution function (CDF) representing undersize mass fraction}\cr
       |              ^
checkRd: (-1) drr.Rd:38: Lost braces
    38 |   \code{orr} {is Rosin - Rammler complementary CDF representing oversize mass fraction ie. relative remainder on the sieve with the mesh size \code{x}}\cr
       |              ^
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hanwen Huang <hanwenh.unc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanwen",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "hanwenh.unc@gmail.com"),
               person(given = c("Yufeng", "Liu", "&", "J.", "S."),
                      family = "Marron",
                      role = "aut"))
as necessary.
Note: skipping ‘c-MoosePopR-SightabilityPopR-Demo.Rmd’ due to unavailable dependencies:
  'car'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpOQb4AJ/file2257d1322c8d62/graph.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running examples in ‘sigmajs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sg_animate
> ### Title: Animate
> ### Aliases: sg_animate
> 
> ### ** Examples
> 
> # generate graph
> nodes <- sg_make_nodes(20)
> edges <- sg_make_edges(nodes, 30)
Warning in sg_make_edges(nodes, 30) : Argument `n` is deprecated
> 
> # add transition
> n <- nrow(nodes)
> nodes$to_x <- runif(n, 5, 10)
> nodes$to_y <- runif(n, 5, 10)
> nodes$to_size <- runif(n, 5, 10)
> 
> sigmajs() %>%
+   sg_nodes(nodes, id, label, size, color, to_x, to_y, to_size) %>%
+   sg_edges(edges, id, source, target) %>% 
+   sg_animate(mapping = list(x = "to_x", y = "to_y", size = "to_size"))
Warning in dir.create(target_dir) :
  cannot create dir 'lib/sigmajs-binding-0.1.5', reason 'No space left on device'
Error in normalizePath(target_dir, "/", TRUE) : 
  path[1]="lib/sigmajs-binding-0.1.5": No such file or directory
Calls: <Anonymous> ... lapply -> FUN -> copyDependencyToDir -> normalizePath
Execution halted
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking:
  'BSgenome', 'BSgenome.Hsapiens.UCSC.hg19', 'ggalluvial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mathew Chamberlain <chamberlainphd@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) add_k_mer_state.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Furkan Gursoy <furkan.gursoy@boun.edu.tr>’

The Description field contains
  Networks. <arXiv:2012.05216>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Louis-Marvin Sander <louis.sander@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Louis-Marvin",
                      family = "Sander",
                      role = c("aut", "cre"),
                      email = "louis.sander@web.de"),
               person(given = c("master", "of", "ecology", "student", "from"),
                      family = "Bayreuth",
                      role = "aut"),
               person(family = "DE",
                      role = "aut"))
as necessary.
Maintainer: ‘Adriano Zanin Zambom <adriano.zambom@csun.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jongwook",
                      family = "Kim",
                      role = "aut"),
               person(given = c("Adriano", "Zanin"),
                      family = "Zambom",
                      role = c("aut", "cre"),
                      email = "adriano.zambom@csun.edu"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GSVA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmplQrGuy/file229ffd3b89b04e': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmplQrGuy/file229ffd3b89b04e': No such file or directory
Error in file(con, "r") : cannot open the connection
checkRd: (-1) sig.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
Running massageExamples to create ‘sigr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpZQSoa3/file2263d0519a69e6/wrapChiSqTest.anova.R': No space left on device
Execution halted
 NONE
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘p_sie.R’ ‘prp.R’ ‘siie.R’
Maintainer: ‘Martin Olivier <olivier.martin@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carpentier",
                      family = "F.",
                      role = "aut"),
               person(given = "Martin",
                      family = "O.",
                      role = "aut"),
               person(given = "Martin",
                      family = "Olivier",
                      role = "cre",
                      email = "olivier.martin@inrae.fr"))
as necessary.
checkRd: (-1) siland.Rd:64: Lost braces; missing escapes or markup?
    64 | \item x_{l,i}, local variable l,
       |         ^
checkRd: (-1) siland.Rd:70: Lost braces; missing escapes or markup?
    70 | \item d_{r,i} the distance between the center of pixel r and the observation at site i.
       |         ^
Maintainer: ‘Rong Zhang <roz16@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "roz16@pitt.edu"),
               person(given = "Zhao",
                      family = "Ren",
                      role = "aut"),
               person(given = "Wei",
                      family = "Chen",
                      role = "aut"))
as necessary.
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking:
  'blockcluster', 'factoextra', 'drclust'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) inlandwaters.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:19: Lost braces in \itemize; meant \describe ?
Error(s) in re-building vignettes:
  ...
--- re-building ‘SillyPuttyVignette.Rmd’ using rmarkdown

Quitting from SillyPuttyVignette.Rmd:59-64 [Setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Umpire'
---
Backtrace:
    ▆
 1. └─base::library(Umpire)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SillyPuttyVignette.Rmd' failed with diagnostics:
there is no package called 'Umpire'
--- failed re-building ‘SillyPuttyVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘SillyPuttyVignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Xianyang Zhang <zhangxiany@stat.tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xianyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangxiany@stat.tamu.edu"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"),
               person(given = "Jincheng",
                      family = "Bai",
                      role = "aut"))
as necessary.
Encountered the following conversion/validation errors:
cannot open the connection
Maintainer: ‘Justin Leach <jleach@uab.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/jmleach-bst/sim2Dpredictr
which should likely be
  https://github.com/jmleach-bst/sim2Dpredictr/issues
instead.
checkRd: (-1) sim_Y_Binary_X.Rd:51: Lost braces
    51 |     \item \code{dist = "binomial"} is drawn from eqn{Bin(XB, XB(1-XB))}
       |                                                     ^
Package required but not available: ‘dbplyr’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SimBIID.Rcheck/00install.out’ for details.
Maintainer: ‘Allison Cynthia Fialkowski <allijazz@uab.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Allison", "Cynthia"),
                    family = "Fialkowski",
                    role = c("aut", "cre"),
                    email = "allijazz@uab.edu")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: corr_bounds.html
    From: inst/doc/method_comp.html
  URI: variable_types
    From: inst/doc/workflow.html
  URI: errorloop.html
    From: inst/doc/workflow.html

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘intercorr_cont.Rd’:
    \keyword{Fleishman,}
    \keyword{continuous,}
    \keyword{correlation,}
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘ggdag’

Packages suggested but not available for checking: 'simr', 'rsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting_started.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmprAsJjW/Rf229f7899b70b4': No space left on device

Quitting from getting_started.Rmd:29-36 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from getting_started.Rmd:29-36 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘getting_started.Rmd’

--- re-building ‘simulating_YSTR_profiles.Rmd’ using rmarkdown
--- finished re-building ‘simulating_YSTR_profiles.Rmd’

SUMMARY: processing the following file failed:
  ‘getting_started.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Xiaolei Liu <xll198708@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Waldir Leoncio <waldir.leoncio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Waldir",
                    family = "Leoncio",
                    role = c("aut", "cre"),
                    email = "waldir.leoncio@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Andreas Alfons <alfons@ese.eur.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Maintainer: ‘Wolfgang Rolke <wolfgang.rolke@upr.edu>’

The Description field contains
  value.  Details can be found in <arXiv:2007.04727>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bootstrap-projection.R’ ‘bootstrap_CIs.Rd’ ‘bundle_sim.R’
    ‘calc_coverage.R’ ‘calc_rejection.R’ ‘extrapolate_coverage.Rd’
    ‘utilities.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘MCSE.Rmd’ using rmarkdown
--- finished re-building ‘MCSE.Rmd’

--- re-building ‘simulation_workflow.Rmd’ using rmarkdown
--- finished re-building ‘simulation_workflow.Rmd’

--- re-building ‘visualization.Rmd’ using rmarkdown

Quitting from visualization.Rmd:81-91 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/RtmpGz2YEn/file2403cd7b421a0d'
---
Backtrace:
    ▆
 1. ├─base::withVisible(knit_print(x, ...))
 2. ├─knitr::knit_print(x, ...)
 3. └─knitr:::knit_print.default(x, ...)
 4.   └─knitr::normal_print(x)
 5.     ├─base::print(x)
 6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
 7.       └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'visualization.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpGz2YEn/file2403cd7b421a0d'
--- failed re-building ‘visualization.Rmd’

SUMMARY: processing the following file failed:
  ‘visualization.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpyoxqP9/Rf2255ca346c0b74': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Kevin Toohey <kevintoohey@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Toohey",
                    role = c("aut", "cre"),
                    email = "kevintoohey@live.com")
as necessary.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luke Miratrix <lmiratrix@g.harvard.edu>’

The Description field contains
  <arXiv:2002.05746>. This package provides methods for fitting ITS
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Charlie Wusuo Liu <liuwusuo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Charlie", "Wusuo"),
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwusuo@gmail.com")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'Sie2nts'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rex Parsons <Rex.Parsons94@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp1Yxj6J/Rf22661057bb497e': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Hyung Park <parkh15@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyung",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "parkh15@nyu.edu"),
               person(given = "Eva",
                      family = "Petkova",
                      role = "aut"),
               person(given = "Thaddeus",
                      family = "Tarpey",
                      role = "aut"),
               person(given = c("R.", "Todd"),
                      family = "Ogden",
                      role = "aut"))
as necessary.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Package required but not available: ‘randomForestSRC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘si_calculate.Rd’
Maintainer: ‘Rami Yaari <ramiyaari@gmail.com>’

The Description field contains
  & Yaari (2018) <arXiv:1807.04202>.  Dattner et al. (2017)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpWSmEnY/file231dea3aaa6254': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpWSmEnY/file231dea3aaa6254': No such file or directory
Error in file(con, "r") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpsdpFSs/Rf22fa1455bc1819': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘anon.R’ ‘anonymise.Rd’
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptsUpZD/file23022b66771631': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmptsUpZD/file23022b66771631': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Stephen Wisser <swisser98@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Stephen", "C"),
                      family = "Wisser",
                      role = "aut"),
               person(given = "Stephen",
                      family = "Wisser",
                      role = "cre",
                      email = "swisser98@gmail.com"))
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Samuel Fernandes <samuelf@illinois.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Augustin Luna <lunaa@cbio.mskcc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Augustin",
                      family = "Luna",
                      role = c("aut", "cre"),
                      email = "lunaa@cbio.mskcc.org"),
               person(given = "Vinodh",
                      family = "Rajapakse",
                      role = "aut"))
as necessary.
Package required but not available: ‘rstanarm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘markdown_block.R’
Running examples in ‘SimpleUpset-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: simpleUpSet
> ### Title: Make simple UpSet plots
> ### Aliases: simpleUpSet
> 
> ### ** Examples
> 
> ## Use a modified version of the movies data provided with the package UpSetR
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
Execution halted
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(SimpleUpset)
  Loading required package: ggplot2
  Loading required package: patchwork
  > 
  > test_check("SimpleUpset")
  Error in `source_dir()`:
  ! Failed to evaluate './setup.R'.
  Caused by error in `library()`:
  ! there is no package called 'tidyverse'
  Backtrace:
       ▆
    1. ├─testthat::test_check("SimpleUpset")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_setup(".", env)
    7. │           └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(...)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       └─base::library(tidyverse) at ./setup.R:1:1
   15. │                         └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
   16. └─testthat (local) `<fn>`(`<pckgNtFE>`)
   17.   └─cli::cli_abort(...)
   18.     └─rlang::abort(...)
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown

Quitting from introduction.Rmd:19-24 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘John P. Nolan  <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "P."),
                      family = "Nolan",
                      role = c("aut", "cre"),
                      email = "jpnolan@american.edu"),
               person(given = c("with", "parts", "adapted", "from"),
                      family = "Fortran",
                      role = "aut"),
               person(given = c("matlab", "code", "by", "Alan"),
                      family = "Genz",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Mercier <amercier@g.harvard.edu>’

The Description field contains
  (2009)<arXiv:0803.0929>.  Koutis I., Levin, A., Peng, R.
  (2013)<arXiv:1209.5821>. Toivonen, H., Mahler, S., Zhou, F.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Deming.Rmd’ using rmarkdown
[WARNING] Citeproc: citation bablok1988 not found
[WARNING] Citeproc: citation passing1983 not found
[WARNING] Citeproc: citation passing1984 not found
--- finished re-building ‘Deming.Rmd’

--- re-building ‘agree_tests.Rmd’ using rmarkdown
--- finished re-building ‘agree_tests.Rmd’

--- re-building ‘agreement_analysis.Rmd’ using rmarkdown

Quitting from agreement_analysis.Rmd:347-356 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/vctrs_error_subscript_oob>
Error in `select()`:
! Can't select columns that don't exist.
✖ Column `lower.CL` doesn't exist.
---
Backtrace:
    ▆
 1. ├─SimplyAgree::agreement_limit(...)
 2. │ └─SimplyAgree:::calc_loa_nest(...)
 3. │   └─... %>% select(avg, bias, SE, df, lower.CL, upper.CL)
 4. ├─dplyr::select(., avg, bias, SE, df, lower.CL, upper.CL)
 5. └─dplyr:::select.data.frame(., avg, bias, SE, df, lower.CL, upper.CL)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'agreement_analysis.Rmd' failed with diagnostics:
Can't select columns that don't exist.
✖ Column `lower.CL` doesn't exist.
--- failed re-building ‘agreement_analysis.Rmd’

--- re-building ‘power_sample_size_vignette.Rmd’ using rmarkdown
--- finished re-building ‘power_sample_size_vignette.Rmd’

--- re-building ‘reanalysis.Rmd’ using rmarkdown
--- finished re-building ‘reanalysis.Rmd’

--- re-building ‘reliability_analysis.Rmd’ using rmarkdown
--- finished re-building ‘reliability_analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘agreement_analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘VIM’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘VIM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RDS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Running massageExamples to create ‘simrel-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpxiNMMn/file234f2a67bdb851/mbrdsim.R': No space left on device
Execution halted
 NONE
Packages required but not available: 'car', 'pbkrtest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Samuel Benidt <sgbenidt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samuel",
                    family = "Benidt",
                    role = c("aut", "cre"),
                    email = "sgbenidt@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hyung Park <parkh15@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyung",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "parkh15@nyu.edu"),
               person(given = "Eva",
                      family = "Petkova",
                      role = "aut"),
               person(given = "Thaddeus",
                      family = "Tarpey",
                      role = "aut"),
               person(given = c("R.", "Todd"),
                      family = "Ogden",
                      role = "aut"))
as necessary.

The Description field contains
  dose rules" <arXiv:2006.00267v2> for detail of the method. The model
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Warning in file() :
  cannot open file '/tmp/RtmpUyH4ln/Rf23375b393e0828': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'INLA', 'INLAspacetime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘simsurv_technical.Rmd’ using rmarkdown
--- finished re-building ‘simsurv_technical.Rmd’

--- re-building ‘simsurv_usage.Rmd’ using rmarkdown

Quitting from simsurv_usage.Rmd:14-23 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'flexsurv'
---
Backtrace:
    ▆
 1. └─base::library(flexsurv)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'simsurv_usage.Rmd' failed with diagnostics:
there is no package called 'flexsurv'
--- failed re-building ‘simsurv_usage.Rmd’

SUMMARY: processing the following file failed:
  ‘simsurv_usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.

The Description field contains
  Van Aelst and Zamar (2019) <arXiv:1812.05678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = "Kristopher",
                      family = "Kapphahn",
                      role = "aut"),
               person(given = "Ariadna",
                      family = "Garcia",
                      role = "aut"),
               person(given = "Manisha",
                      family = "Desai",
                      role = "aut"),
               person(given = c("Maria", "E."),
                      family = "Montez-Rath",
                      role = "aut"))
as necessary.

The Description field contains
  the main wrapper function. See Montez-Rath et al. <arXiv:1709.10074>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Running examples in ‘simtrial-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as_gt
> ### Title: Convert summary table to a gt object
> ### Aliases: as_gt as_gt.simtrial_gs_wlr
> 
> ### ** Examples
> 
> 
> # Parameters for enrollment
> enroll_rampup_duration <- 4 # Duration for enrollment ramp up
> enroll_duration <- 16 # Total enrollment duration
> enroll_rate <- gsDesign2::define_enroll_rate(
+   duration = c(
+     enroll_rampup_duration, enroll_duration - enroll_rampup_duration),
+  rate = c(10, 30))
Error in loadNamespace(x) : there is no package called ‘gsDesign2’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Stéphane Guerrier <stef.guerrier@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simts.Rcheck/00install.out’ for details.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpK7Cuq5/file22f03a7ec53a16': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpK7Cuq5/file22f03a7ec53a16': No such file or directory
Error in file(con, "r") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘SE_Agri-vignette.Rmd’ using rmarkdown
--- finished re-building ‘SE_Agri-vignette.Rmd’

--- re-building ‘SE_drive-vignette.Rmd’ using rmarkdown

Quitting from SE_drive-vignette.Rmd:109-114 [output]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `purrr::map()`:
ℹ In index: 1.
Caused by error in `file()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. ├─simulateDCE::sim_all(...)
  2. │ ├─... %>% stats::setNames(designname)
  3. │ └─purrr::map(...)
  4. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  5. │     ├─purrr:::with_indexed_errors(...)
  6. │     │ └─base::withCallingHandlers(...)
  7. │     ├─purrr:::call_with_cleanup(...)
  8. │     └─simulateDCE (local) .f(.x[[i]], ...)
  9. │       └─mixl::specify_model(...)
 10. │         └─Rcpp::sourceCpp(code = e1$cpp_code, env = cpp_container, ...)
 11. ├─stats::setNames(., designname)
 12. └─Rcpp (local) `<fn>`(...)
 13.   └─Rcpp:::.sourceCppDynlibWriteCache(cacheDir, cache)
 14.     └─base::save(cache, file = index_file, compress = FALSE)
 15.       └─base::file(file, "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SE_drive-vignette.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `file()`:
! cannot open the connection
--- failed re-building ‘SE_drive-vignette.Rmd’

--- re-building ‘csa-vignette.Rmd’ using rmarkdown
--- finished re-building ‘csa-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘SE_drive-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Martin Nahuel Garcia <garcia.martin@inta.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Martin", "Nahuel"),
                    family = "Garcia",
                    role = c("aut", "cre"),
                    email = "garcia.martin@inta.gob.ar")
as necessary.
Packages required but not available: 'recipes', 'synthpop'

Package suggested but not available for checking: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nikos Sidiropoulos <nikos.sidiro@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rick Dale <racdale@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rick",
                      family = "Dale",
                      role = c("aut", "cre"),
                      email = "racdale@gmail.com"),
               person(given = c("Harish", "S."),
                      family = "Bhat",
                      role = "aut"))
as necessary.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmp07Aleb/Rd2pdf22b0714905c2ac/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SingleCaseES.Rcheck/00install.out’ for details.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ICtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Boxiang Liu <jollier.liu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Boxiang",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "jollier.liu@gmail.com")
as necessary.
Package required but not available: ‘PNDSIBGE’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Federico Vivaldi <federico-vivaldi@virgilio.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Federico", "Vivaldi;", "Tommaso"),
                      family = "Lomonaco",
                      role = "aut"),
               person(given = "Federico",
                      family = "Vivaldi",
                      role = "cre",
                      email = "federico-vivaldi@virgilio.it"))
as necessary.
checkRd: (-1) sim.bdh.age.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:70: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Oscar Garcia <garcia@dasometrics.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oscar",
                    family = "Garcia",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0002-8995-1341")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘F Scott Dahlgren <fdahlgr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("F", "Scott"),
                      family = "Dahlgren",
                      role = c("aut", "cre"),
                      email = "fdahlgr@gmail.com"),
               person(given = c("Ivo", "M"),
                      family = "Foppa",
                      role = "aut"))
as necessary.
Package required but not available: ‘CORElearn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mélanie Huchon <melanie.huchon@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boris",
                      family = "Hejblum",
                      role = "aut"),
               person(given = "Mélanie",
                      family = "Huchon",
                      role = c("aut", "cre"),
                      email = "melanie.huchon@u-bordeaux.fr"))
as necessary.
Maintainer: ‘Hyunseung Kang <hyunseung@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hyunseung",
                    family = "Kang",
                    role = c("aut", "cre"),
                    email = "hyunseung@stat.wisc.edu")
as necessary.
Package required but not available: ‘rsample’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) rawCCD.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{distr.type}{school district type (constructed for illustration purposes; (values={"A", "B", "C", "D"})).}
       |                                                                                          ^
checkRd: (-1) selectMatch.Rd:61: Lost braces; missing escapes or markup?
    61 | \item{replacementUnitsFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "replacementUnits.csv"}
       |                                                                    ^
checkRd: (-1) selectMatch.Rd:63: Lost braces; missing escapes or markup?
    63 | \item{subUnitTableFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "subUnitTable.csv"}
       |                                                                ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                  ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                                                                                  ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘sitepickR-demo.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmpm7JGuW/Rf23414155c12ff0': No space left on device

Quitting from sitepickR-demo.Rmd:304-307 [unnamed-chunk-25]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from sitepickR-demo.Rmd:304-307 [unnamed-chunk-25]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sitepickR-demo.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘sitepickR-demo.Rmd’

SUMMARY: processing the following file failed:
  ‘sitepickR-demo.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Phillip", "B."),
                    family = "Nicol",
                    role = c("aut", "cre"),
                    email = "philnicol740@gmail.com")
as necessary.
Maintainer: ‘Jonas Stein <news@jonasstein.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonas",
                      family = "Stein",
                      role = c("aut", "cre"),
                      email = "news@jonasstein.de"),
               person(given = "Ben",
                      family = "Tupper",
                      role = "aut"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Running massageExamples to create ‘sitools-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp5GSxoZ/file22f4f71e12475/sitools-package.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Package required but not available: ‘epitabulate’

Packages suggested but not available for checking:
  'flextable', 'ggalluvial', 'ggspatial', 'gtsummary', 'janitor',
  'labelled', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leafgl', 'tmap'

Packages suggested but not available for checking:
  'caret', 'randomForestExplainer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ss.cc.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ss.ci.Rd:26: Lost braces
    26 | \item{alpha}{The eqn{\\alpha} error used to compute the \eqn{100*(1-\\alpha)\%} confidence interval}
       |                     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |                 ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                            ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                                        ^
Author field differs from that derived from Authors@R
  Author:    ‘Sean Kross [aut], Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Fred Hutchinson Cancer Center [fnd] (007ps6h72)’
  Authors@R: ‘Sean Kross [aut], Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Fred Hutchinson Cancer Center [fnd] (ROR: <https://ror.org/007ps6h72>)’
Rd conversion errors:
Converting parsed Rd's to LaTeX ......Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpEBf7q3/ltx24d96e62d7013c/aws_user_access_key_delete.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘sizeMat.Rmd’ using rmarkdown

Quitting from sizeMat.Rmd:102-108 [plot-classify-base]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/RtmpvsIFbr/file2391a44180ea8a'
---
Backtrace:
    ▆
 1. ├─base::plot(classify_data, xlab = "Carapace width (mm)", ylab = "Chela height (mm)")
 2. └─sizeMat:::plot.classify(...)
 3.   ├─graphics::plot(...)
 4.   └─graphics::plot.default(...)
 5.     └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sizeMat.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpvsIFbr/file2391a44180ea8a'
--- failed re-building ‘sizeMat.Rmd’

SUMMARY: processing the following file failed:
  ‘sizeMat.Rmd’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SiZer.R’
Maintainer: ‘Joe Roberts <jorobert@tibco.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("TIBCO", "Software"),
                      family = "Inc.",
                      role = "aut"),
               person(given = "Joe",
                      family = "Roberts",
                      role = "cre",
                      email = "jorobert@tibco.com"))
as necessary.
Running examples in ‘sjlabelled-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_labels
> ### Title: Add, replace or remove value labels of variables
> ### Aliases: add_labels replace_labels remove_labels
> 
> ### ** Examples
> 
> # add_labels()
> data(efc)
> get_labels(efc$e42dep)
[1] "independent"          "slightly dependent"   "moderately dependent"
[4] "severely dependent"  
> 
> x <- add_labels(efc$e42dep, labels = c(`nothing` = 5))
Error in get_na_helper(x, as.tag) : 
  Package 'haven' required for this function. Please install it.
Calls: add_labels ... add_labels_helper -> get_na -> get_na.default -> get_na_helper
Execution halted
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(sjlabelled)
  > 
  > test_check("sjlabelled")
  Saving _problems/test-remove_labels-6.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 8 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-remove_labels.R:6:3'): remove_labels ───────────────────────────
  Error in `get_na_helper(x, as.tag)`: Package 'haven' required for this function. Please install it.
  Backtrace:
      ▆
   1. └─sjlabelled::remove_labels(z, labels = 2) at test-remove_labels.R:6:3
   2.   └─sjlabelled:::remove_labels_helper(.dat, labels)
   3.     ├─sjlabelled::get_na(x)
   4.     └─sjlabelled:::get_na.default(x)
   5.       └─sjlabelled:::get_na_helper(x, as.tag)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 8 ]
  Error:
  ! Test failures.
  Execution halted
install log ‘’ does not exist
Package required but not available: ‘sjmisc’

Packages suggested but not available for checking:
  'brms', 'car', 'haven', 'glmmTMB', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
                      comment = "Shawn"),
               person(given = "Zhangchen",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Larisa"),
                      family = "Miropolsky",
                      role = "aut"),
               person(given = "Michael",
                      family = "Wu",
                      role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "lee7801@snu.ac.kr",
                      comment = "Shawn"))
as necessary.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chun Fung Kwok <jkwok@svi.edu.au>’

The BugReports field in DESCRIPTION has
  https://github.com/kcf-jackson/sketch
which should likely be
  https://github.com/kcf-jackson/sketch/issues
instead.
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Scott",
                      role = c("aut", "cre"),
                      email = "d.scott@auckland.ac.nz"),
               person(given = "Fiona",
                      family = "Grimson",
                      role = "aut"))
as necessary.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hanmo Li <hanmo@pstat.ucsb.edu>’

The Description field contains
  Mengyang Gu (2023), <arXiv:2310.18611>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Patchanok Srisuradetchai <s.patchanok@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patchanok",
                    family = "Srisuradetchai",
                    role = c("aut", "cre"),
                    email = "s.patchanok@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Ski.Mack.Rd’:
    \keyword{block designs, missing values}
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/skimr.Rcheck/00install.out’ for details.
Warning in file() :
  cannot open file '/tmp/RtmpbYS7lx/Rf2352504cb2382d': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpczg3yT/Rf234b587d6dc1d6': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘skylight-Ex.R’ failed
The error occurred in:

Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'BayesianTools', 'plotly', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matt Kaye <mrkaye97@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bob",
                      family = "Rudis",
                      role = c("aut", "cre")),
               person(given = "Jay",
                      family = "Jacobs",
                      role = "ctb"),
               person(given = "David",
                      family = "Severski",
                      role = "ctb"),
               person(given = "Quinn",
                      family = "Weber",
                      role = "ctb"),
               person(given = "Konrad",
                      family = "Karczewski",
                      role = "ctb"),
               person(given = "Shinya",
                      family = "Uryu",
                      role = "ctb"),
               person(given = "Gregory",
                      family = "Jefferis",
                      role = "ctb"),
               person(given = "Ed",
                      family = "Niles",
                      role = "ctb"),
               person(given = "Rick",
                      family = "Saporta",
                      role = "ctb"),
               person(given = "Jonathan",
                      family = "Sidi",
                      role = c("aut", "ctb")),
               person(given = "Matt",
                      family = "Kaye",
                      role = c("aut", "ctb", "cre"),
                      email = "mrkaye97@gmail.com"),
               person(given = "Xinye",
                      family = "Li",
                      role = "ctb"),
               person(given = "Andrie",
                      family = "de Vries",
                      role = c("aut", "ctb")))
as necessary.
cannot open the connection
problem found in ‘crossprod.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpr3NMep/file2352fd28d931c4/sheatmap.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SLCARE.Rcheck/00install.out’ for details.
Maintainer: ‘Muntashir-Al-Arefin <sheen4783@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Muntashir-Al-Arefin",
                      role = c("aut", "cre"),
                      email = "sheen4783@gmail.com"),
               person(given = c("Prof.", "Md.", "Ayub"),
                      family = "Al.",
                      role = "aut"))
as necessary.
Maintainer: ‘Christine Blume <christine.blume@sbg.ac.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'Hmisc', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Berwin A Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "F.L."),
                      family = "Ramsey",
                      role = "aut"),
               person(given = c("D.W.", "Schafer;", "modifications", "by", "Daniel", "W."),
                      family = "Schafer",
                      role = "aut"),
               person(given = "Jeannie",
                      family = "Sifneos",
                      role = "aut"),
               person(given = c("Berwin", "A.", "Turlach;", "vignettes", "contributed", "by", "Nicholas"),
                      family = "Horton",
                      role = "aut"),
               person(given = "Kate",
                      family = "Aloisio",
                      role = "aut"),
               person(given = "Ruobing",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("with", "corrections", "by", "Randall"),
                      family = "Pruim",
                      role = "aut"),
               person(given = c("Berwin", "A"),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Maintainer: ‘Berwin A Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "F.L."),
                      family = "Ramsey",
                      role = "aut"),
               person(given = c("D.W.", "Schafer;", "modifications", "by", "Daniel", "W."),
                      family = "Schafer",
                      role = "aut"),
               person(given = "Jeannie",
                      family = "Sifneos",
                      role = "aut"),
               person(given = c("Berwin", "A.", "Turlach;", "vignettes", "contributed", "by", "Nicholas"),
                      family = "Horton",
                      role = "aut"),
               person(given = "Linda",
                      family = "Loi",
                      role = "aut"),
               person(given = "Kate",
                      family = "Aloisio",
                      role = "aut"),
               person(given = "Ruobing",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("with", "corrections", "by", "Randall"),
                      family = "Pruim",
                      role = "aut"),
               person(given = c("Berwin", "A"),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Packages required but not available: 'fda', 'fdapace'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SLGP.Rcheck/00install.out’ for details.
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shan",
                    family = "Ba",
                    role = c("aut", "cre"),
                    email = "shanbatr@gmail.com")
as necessary.
Packages required but not available: 'factoextra', 'Seurat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Everaldo Freitas Guedes <efgestatistico@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/efguedes/SlidingWindows
which should likely be
  https://github.com/efguedes/SlidingWindows/issues
instead.
checkRd: (-1) fit_slim.Rd:24: Lost braces; missing escapes or markup?
    24 | sum(x' V^{-1} (y - x beta)) = 0 as the covariance V tends from V[, , 1] +
       |          ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘slim.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpzNRv0Q/Rf238c745eb420e5': No space left on device

Quitting from slim.Rmd:96-103 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from slim.Rmd:96-103 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'slim.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘slim.Rmd’

SUMMARY: processing the following file failed:
  ‘slim.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpaIchX0/ltx23986040abb2eb', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpaIchX0/ltx23986040abb2eb/coef.slim.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emmanuel Caron <emmanuelcaron3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emmanuel",
                      family = "Caron",
                      role = c("aut", "cre"),
                      email = "emmanuelcaron3@gmail.com"),
               person(given = "Jérôme",
                      family = "Dedecker",
                      role = "aut"),
               person(given = "Bertrand",
                      family = "Michel",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1906.06583>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'ems', 'caretEnsemble'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ibd’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Rusch <thomas.rusch@wu.ac.at>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available:
  'smacof', 'ProjectionBasedClustering', 'weights'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘flextable’

Package suggested but not available for checking: ‘gurobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘William Artman <William_Artman@URMC.Rochester.edu>’

The Description field contains
  outcomes. Please see Artman (2020) <arXiv:2008.02341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
checkRd: (-1) cities_lon_lat.Rd:6: Lost braces
     6 | A subset of world.cities{maps}. Extracted in order to shink number of dependencies. 
       |                         ^
Maintainer: ‘Dipankar Bandyopadhyay <bandyopd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Xu",
                      role = "aut"),
               person(given = "Dipankar",
                      family = "Bandyopadhyay",
                      role = c("aut", "cre"),
                      email = "bandyopd@gmail.com"),
               person(given = "Douglas",
                      family = "Azevedo",
                      role = "aut"),
               person(given = "Bibhas",
                      family = "Chakraborty",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1902.09386>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpdYtN1h/file2397b64032ebc9/ss_list_sheet_shares.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Jun Chen <Chen.Jun2@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "Chen.Jun2@mayo.edu"),
               person(given = "Ehsan",
                      family = "Behnam",
                      role = "aut",
                      email = "behnamgh@usc.edu"))
as necessary.
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SMASH.Rcheck/00install.out’ for details.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpkseEkG/Rf23a32c31602fbf': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Maintainer: ‘Remko Duursma <remkoduursma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Warton",
                      role = "aut",
                      email = "David.Warton@unsw.edu.au"),
               person(given = "Remko",
                      family = "Duursma",
                      role = c("aut", "cre"),
                      email = "remkoduursma@gmail.com"),
               person(given = "Daniel",
                      family = "Falster",
                      role = "aut"),
               person(given = "Sara",
                      family = "Taskinen.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Herman Jopia <hjopia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Herman",
                    family = "Jopia",
                    role = c("aut", "cre"),
                    email = "hjopia@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘SmCCNet_Vignette_AutoSmCCNet.Rmd’ using rmarkdown
--- finished re-building ‘SmCCNet_Vignette_AutoSmCCNet.Rmd’

--- re-building ‘SmCCNet_Vignette_MultiOmics.Rmd’ using rmarkdown

Quitting from SmCCNet_Vignette_MultiOmics.Rmd:525-536 [loadings1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    x
 1. \-base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SmCCNet_Vignette_MultiOmics.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘SmCCNet_Vignette_MultiOmics.Rmd’

--- re-building ‘SmCCNet_Vignette_SingleOmics.Rmd’ using rmarkdown

Quitting from SmCCNet_Vignette_SingleOmics.Rmd:440-451 [loadings1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    x
 1. \-base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SmCCNet_Vignette_SingleOmics.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘SmCCNet_Vignette_SingleOmics.Rmd’

SUMMARY: processing the following files failed:
  ‘SmCCNet_Vignette_MultiOmics.Rmd’ ‘SmCCNet_Vignette_SingleOmics.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Ed Merkle <merklee@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ed",
                      family = "Merkle",
                      role = c("aut", "cre"),
                      email = "merklee@missouri.edu"),
               person(given = "Michael",
                      family = "Smithson",
                      role = "aut"))
as necessary.
checkRd: (-1) trlong.Rd:17: Lost braces
    17 |     \item{\code{resp}}{a factor indicating the transport mode choice, and \code{B} denotes taking the bus, code{D} denotes driving one's own vehicle, \code{F} denotes getting a ride with a friend, \code{O} denotes other, and \code{W} denotes walking}
       |                                                                                                                ^
Packages required but not available: 'GSVA', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'mice', 'tableone'

Packages suggested but not available for checking:
  'broom.helpers', 'gtsummary', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) smdocker_log.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:35-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:19: Lost braces in \itemize; meant \describe ?
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpPyM9Il/Rf2398c4ee73e9f': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpbZzbKv/file23de8971dc9a07/optimal_ubpop.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘smerc-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpdbWZ8V/file24071f45b6f3fe/morancr.test.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘smer.Rmd’ using rmarkdown
--- finished re-building ‘smer.Rmd’

Fatal error: cannot create 'R_TempDir'
--- re-building ‘tutorial-cite-us.Rmd’ using rmarkdown
--- finished re-building ‘tutorial-cite-us.Rmd’

--- re-building ‘tutorial-create-mask-file.Rmd’ using rmarkdown
--- finished re-building ‘tutorial-create-mask-file.Rmd’

--- re-building ‘tutorial-memory-optimization.Rmd’ using rmarkdown
--- finished re-building ‘tutorial-memory-optimization.Rmd’

--- re-building ‘tutorial-simulate-traits.Rmd’ using rmarkdown
--- finished re-building ‘tutorial-simulate-traits.Rmd’

SUMMARY: processing the following file failed:
  ‘study-erythroid-differentiation-data.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpySQoVz/Rf239824a796b9a': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘efficiencies.Rd’, ‘fitted.Rd’, ‘ic.Rd’, ‘logLik.Rd’, ‘nobs.Rd’, ‘residuals.Rd’, ‘smfa.Rd’, ‘summary.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp38YHGY/file2536cc9a9b391': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp38YHGY/file2536cc9a9b391': No such file or directory
Error in file(con, "r") : cannot open the connection
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                  ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                            ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                          ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                                    ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                              ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                        ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                      ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                                ^
Maintainer: ‘Qian Zhu <zqian@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qian",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "zqian@jimmy.harvard.edu"),
               person(given = "Guo-Cheng",
                      family = "Yuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Darren Wilkinson <darrenjwilkinson@btinternet.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Darren",
                    family = "Wilkinson",
                    role = c("aut", "cre"),
                    email = "darrenjwilkinson@btinternet.com")
as necessary.
sh: 1: cannot create /tmp/Rtmpc6nCXO/xshell240ad115725332: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpc6nCXO/xshell240ad115725332': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Paul Walter <paul.w@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Walter",
                    role = c("aut", "cre"),
                    email = "paul.w@gmx.net")
as necessary.
Packages required but not available: 'Hmisc', 'weights'

Package suggested but not available for checking: ‘Kernelheaping’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Package required but not available: ‘cgaim’

Package suggested but not available for checking: ‘gurobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexey Shipunov <dactylorhiza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Shipunov",
                    role = c("aut", "cre"),
                    email = "dactylorhiza@gmail.com",
                    comment = "with help of Eugenij Altshuler")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpK6PV3l/ltx23d2ca768bf03/smle_ph.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Siddharth Jain <siddharthjain242@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siddharth",
                      family = "Jain",
                      role = c("aut", "cre"),
                      email = "siddharthjain242@gmail.com"),
               person(given = "Prabhanjan",
                      family = "Tattar",
                      role = "aut"))
as necessary.
Maintainer: ‘Nicolas Vergne <nicolas.vergne@univ-rouen.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vlad", "Stefan"),
                      family = "Barbu",
                      role = "aut"),
               person(given = "Caroline",
                      family = "Berard",
                      role = "aut"),
               person(given = "Dominique",
                      family = "Cellier",
                      role = "aut"),
               person(given = "Mathilde",
                      family = "Sautreuil",
                      role = "aut"),
               person(given = "Nicolas",
                      family = "Vergne",
                      role = c("aut", "cre"),
                      email = "nicolas.vergne@univ-rouen.fr"))
as necessary.
checkRd: (-1) estimMk.Rd:44: Lost braces; missing escapes or markup?
    44 | estimMk returns the transition probability matrix of size (S^{k})xS (with S = length(E)) 
       |                                                              ^
Maintainer: ‘Aldo M. Garay <medina_garay@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aldo", "M."),
                      family = "Garay",
                      role = c("aut", "cre"),
                      email = "medina_garay@yahoo.com"),
               person(given = c("Monique", "Bettio"),
                      family = "Massuia",
                      role = "aut",
                      email = "moniquemassuia@gmail.com"),
               person(given = "Victor",
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Maintainer: ‘Qingan Sun <quinsun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingan",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "quinsun@gmail.com"),
               person(given = "Xiaojun",
                      family = "Li",
                      role = "aut"),
               person(given = c("James", "C"),
                      family = "Sacchettini",
                      role = "aut"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘smoke-package.Rd’, ‘status-methods.Rd’, ‘status.Rd’, ‘tExp-methods.Rd’, ‘tExp.Rd’, ‘tExp_--methods.Rd’, ‘tExp_-.Rd’, ‘traces-methods.Rd’, ‘traces.Rd’, ‘traces_--methods.Rd’, ‘traces_-.Rd’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smoothbp.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = c("Sharon", "M."),
                      family = "Lutz",
                      role = "ctb"),
               person(given = "Nilanjana",
                      family = "Laha",
                      role = "ctb"),
               person(given = "Christoph",
                      family = "Lange",
                      role = "ctb"))
as necessary.
Maintainer: ‘Christian Hennig <christian.hennig@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Hennig",
                    role = c("aut", "cre"),
                    email = "christian.hennig@unibo.it")
as necessary.
Packages required but not available: 'cfda', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘adam.Rmd’ using rmarkdown
--- finished re-building ‘adam.Rmd’

--- re-building ‘ces.Rmd’ using rmarkdown
--- finished re-building ‘ces.Rmd’

--- re-building ‘es.Rmd’ using rmarkdown
--- finished re-building ‘es.Rmd’

--- re-building ‘gum.Rmd’ using rmarkdown
--- finished re-building ‘gum.Rmd’

--- re-building ‘oes.Rmd’ using rmarkdown
--- finished re-building ‘oes.Rmd’

--- re-building ‘simulate.Rmd’ using rmarkdown
--- finished re-building ‘simulate.Rmd’

--- re-building ‘sma.Rmd’ using rmarkdown
--- finished re-building ‘sma.Rmd’

--- re-building ‘smooth.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpFbLaey/Rf25a1df58fb6895': No space left on device

Quitting from smooth.Rmd:12-15 [global_options]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from smooth.Rmd:12-15 [global_options]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'smooth.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘smooth.Rmd’

--- re-building ‘ssarima.Rmd’ using rmarkdown
--- finished re-building ‘ssarima.Rmd’

SUMMARY: processing the following file failed:
  ‘smooth.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpRCrFb1/Rf23d3d31b1d469b': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .try_quietly -> file
Execution halted
Running massageExamples to create ‘smoots-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpQMvKju/file24148d40433054/msmooth.R': No space left on device
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smosr.Rcheck/00install.out’ for details.
Packages required but not available: 'ggpubr', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Adrian Bowman <adrian.bowman@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Bowman",
                      role = c("aut", "cre"),
                      email = "adrian.bowman@glasgow.ac.uk"),
               person(given = c("Adelchi", "Azzalini.", "Ported", "to", "R", "by", "B.", "D.", "Ripley", "up", "to", "version"),
                      family = "2.0",
                      role = "aut",
                      email = "ripley@stats.ox.ac.uk"),
               person(given = c("version", "2.1", "by", "Adrian"),
                      family = "Bowman",
                      role = "aut"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "aut"),
               person(given = c("version", "2.2", "by", "Adrian"),
                      family = "Bowman.",
                      role = "aut"))
as necessary.
Maintainer: ‘Dimitris Kavroudakis <dimitris123@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Kavroudakis",
                    role = c("aut", "cre"),
                    email = "dimitris123@gmail.com")
as necessary.
Packages required but not available: 'rms', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabriel Loewinger <gloewinger@gmail.com>’

The Description field contains
  Loewinger et al., (2022) <arXiv:2212.08697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wujuan Zhong <zhongwujuan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wujuan",
                    family = "Zhong",
                    role = c("aut", "cre"),
                    email = "zhongwujuan@gmail.com")
as necessary.
Maintainer: ‘Samuel Blanck <samuel.blanck@univ-lille.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillemette",
                      family = "Marot",
                      role = c("aut", "cre")),
               person(given = "Samuel",
                      family = "Blanck",
                      role = "cre",
                      email = "samuel.blanck@univ-lille.fr"))
as necessary.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sk.R’ ‘sk_export.R’ ‘sk_index.R’ ‘sk_pars.R’ ‘sk_plot.R’
    ‘sk_plot.Rd’ ‘sk_sub.Rd’ ‘sk_var.Rd’ ‘sk_var_mult.Rd’
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                  ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                           ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                                      ^
checkRd: (-1) sk_GLS.Rd:40: Lost braces; missing escapes or markup?
    40 | Operations with V^{-1} are computed using the factorization \code{fac} (see \code{sk_var}), or
       |                   ^
checkRd: (-1) sk_LL.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{quad_form} is z^T V^{-1} z, for the observed response vector z, which is constructed
       |                           ^
checkRd: (-1) sk_var.Rd:41: Lost braces; missing escapes or markup?
    41 | returns the quadratic form X^T V^{-1} X.
       |                                  ^
checkRd: (-1) sk_var.Rd:33: Lost braces; missing escapes or markup?
    33 | either matrix \code{V}, or X^T V^{-1} X, or a factorization ('chol' or 'eigen')
       |                                  ^
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Packages required but not available: 'keras', 'CORElearn'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Takayuki Kawashima <kawashima@c.titech.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Toshihiro",
                      family = "Abe",
                      role = "aut",
                      email = "abetosh@ss.nanzan-u.ac.jp"),
               person(given = "Hironori",
                      family = "Fujisawa",
                      role = "aut",
                      email = "fujisawa@ism.ac.jp"),
               person(given = "Takayuki",
                      family = "Kawashima",
                      role = c("aut", "cre"),
                      email = "kawashima@c.titech.ac.jp"))
as necessary.
Maintainer: ‘Benjamin Brew <goldenberglab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bo",
                      family = "Wang",
                      role = "aut"),
               person(given = "Aziz",
                      family = "Mezlini",
                      role = "aut"),
               person(given = "Feyyaz",
                      family = "Demir",
                      role = "aut"),
               person(given = "Marc",
                      family = "Fiume",
                      role = "aut"),
               person(given = "Zhuowen",
                      family = "Tu",
                      role = "aut"),
               person(given = "Michael",
                      family = "Brudno",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Haibe-Kains",
                      role = "aut"),
               person(given = "Anna",
                      family = "Goldenberg",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Brew",
                      role = "cre",
                      email = "goldenberglab@gmail.com"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpkG94ui/file240f957b8223c1/snha_rsquare.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Wei Sun <sunweisurrey8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "sunweisurrey8@gmail.com"),
               person(given = "Xingye",
                      family = "Qiao",
                      role = "aut"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRgCfNo/ltx2415782ec3a244/myerror.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpqSNyj5/Rf24141f38aab4b2': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> unlist -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Jochen Knaus <jo@imbi.uni-freiburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jochen",
                    family = "Knaus",
                    role = c("aut", "cre"),
                    email = "jo@imbi.uni-freiburg.de")
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = c("A.", "J."),
                      family = "Rossini",
                      role = "aut"))
as necessary.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"),
               person(given = c("A.", "J."),
                      family = "Rossini",
                      role = "aut"),
               person(given = "Na",
                      family = "Li",
                      role = "aut"),
               person(given = "H.",
                      family = "Sevcikova",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/snpAIMeR.Rcheck/00install.out’ for details.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

Packages suggested but not available for checking:
  'biomaRt', 'VariantAnnotation', 'org.Hs.eg.db',
  'TxDb.Hsapiens.UCSC.hg19.knownGene'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GWASTools', 'biomaRt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘biomaRt’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Hervas <ddhervas@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hervas",
                    role = c("aut", "cre"),
                    email = "ddhervas@yahoo.es")
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [10s/11s] OK
Maintainer: ‘Luis Benavides <luisbv@tec.mx>’

The Description field contains
  (2019) <arXiv:1901.04443>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alireza Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = "aut"),
               person(given = "Asad",
                      family = "Hasan",
                      role = "aut"),
               person(given = "Marshall",
                      family = "Jiang",
                      role = "aut"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = "Alireza",
                      family = "Mahani",
                      role = "cre",
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
install log ‘’ does not exist
Maintainer: ‘Maikol Solís <maikol.solis@ucr.ac.cr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maikol",
                    family = "Solís",
                    role = c("aut", "cre"),
                    email = "maikol.solis@ucr.ac.cr")
as necessary.

The Description field contains
  M. (2018) <arXiv:1803.03333>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
install log ‘’ does not exist
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kieran Healy <kjhealy@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                          ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                        ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                                     ^
Maintainer: ‘Yang Li <yangli.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yangli.stat@gmail.com"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"))
as necessary.
checkRd: (-1) db_compact.Rd:41: Lost braces; missing escapes or markup?
    41 | database structure will be set to true. See GET /{db}. You can also obtain a list of
       |                                                  ^
Maintainer: ‘Jose D. Loera <jose.loera@inegi.org.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jose", "D."),
                    family = "Loera",
                    role = c("aut", "cre"),
                    email = "jose.loera@inegi.org.mx")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/Rtmp0KdYNP/Rf240a41498954eb': No space left on device
Maintainer: ‘G. Peters <peters.activities@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Peters",
                    role = c("aut", "cre"),
                    email = "peters.activities@gmail.com",
                    comment = "Ed.")
as necessary.
Maintainer: ‘Arnald Puy <arnald.puy@pm.me>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/Rtmpf86uP8/Rf240a4c1c8bee55': No space left on device
Packages required but not available: 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Seungjun Ahn <seungjun.ahn@mountsinai.org>’

The Description field contains
  <arXiv:2303.13702v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Christian Thine Omuto <thineomuto@yahoo.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'caret', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘KFactor.Rd’:
    \keyword{Nomograph; Particle-size; Organic matter; [TRUNCATED]
  File ‘RFactor_calc.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘RFactor_est.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘SoilConservation.Rd’:
    \keyword{Soil Conservation; Erosivity index; R-Fac [TRUNCATED]
  File ‘SoilLoss.Rd’:
    \keyword{Soil Loss; Water Erosion; R Factor; K Fac [TRUNCATED]
Running massageExamples to create ‘soilDB-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpLK0fMX/file24d34339b473f8/fetchHWSD.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘dominant-es.Rmd’ using rmarkdown
--- finished re-building ‘dominant-es.Rmd’

Error in file(con, "w") : cannot open the connection
Calls: <Anonymous> -> R_runR
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptUPBhP/ltx24fe9c204628d4/get_NASIS_table_name_by_purpose.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmptluC5y/Rd2pdf2418ab766330b1/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Hugo Rodrigues <rodrigues.machado.hugo@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘anhydrous_conditions_usda.Rd’, ‘anionic_subgroup_usda.Rd’, ‘annotate_wrb_from_usda.Rd’, ‘anthraquic.Rd’, ‘anthric_horizons.Rd’, ‘apply_horizons_extraction.Rd’, ‘apply_site_extraction.Rd’, ‘aqualf_qualifying_usda.Rd’, ‘aquand_qualifying_usda.Rd’, ‘aquandic_subgroup_usda.Rd’, ‘aquent_qualifying_usda.Rd’, ‘aquept_qualifying_usda.Rd’, ‘aquert_qualifying_usda.Rd’, ‘aquic_conditions_usda.Rd’, ‘aquic_subgroup_usda.Rd’, ‘aquoll_qualifying_usda.Rd’, ‘aquult_qualifying_usda.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .............................................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpBeyKLB/file27de9d7e3e4fd2': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpBeyKLB/file27de9d7e3e4fd2': No such file or directory
Error in file(con, "r") : cannot open the connection
install log ‘’ does not exist
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenglong",
                      family = "Ye",
                      role = "aut",
                      email = "yexxx323@umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuhong",
                      family = "Yang",
                      role = "aut",
                      email = "yyang@stat.umn.edu"))
as necessary.
Maintainer: ‘Carlos A. Sierra <csierra@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A."),
                      family = "Sierra",
                      role = c("aut", "cre"),
                      email = "csierra@bgc-jena.mpg.de"),
               person(given = "Markus",
                      family = "Mueller",
                      role = "aut"))
as necessary.
Package required but not available: ‘modelr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emanuele",
                      family = "Cordano",
                      role = c("aut", "cre"),
                      email = "emanuele.cordano@gmail.com"),
               person(given = "Daniele",
                      family = "Andreis",
                      role = "aut"),
               person(given = "Fabio",
                      family = "Zottele",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhaoliang He <1024299329@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoliang",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "1024299329@qq.com"),
               person(given = "Linsui",
                      family = "Deng",
                      role = "aut",
                      email = "1175520015@qq.com"),
               person(given = "Kaiwen",
                      family = "Tan",
                      role = "aut",
                      email = "913596401@qq.com"))
as necessary.
Maintainer: ‘Jasper Van doninck <vandoninck.jasper@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jasper",
                    family = "Van doninck",
                    role = c("aut", "cre"),
                    email = "vandoninck.jasper@gmail.com")
as necessary.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bijan",
                    family = "Seyednasrollah",
                    role = c("aut", "cre"),
                    email = "bijan.s.nasr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘DayOfYear.Rd’:
    \keyword{DOY,}
checkRd: (-1) solr_mlt.Rd:70: Lost braces; missing escapes or markup?
    70 | TermVector DEFAULT_FIELD_NAMES = new String[] {"contents"}
       |                                               ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘cores_collections.Rmd’ using rmarkdown
--- finished re-building ‘cores_collections.Rmd’

--- re-building ‘document_management.Rmd’ using rmarkdown
--- finished re-building ‘document_management.Rmd’

Fatal error: cannot create 'R_TempDir'
--- re-building ‘search.Rmd’ using rmarkdown
--- finished re-building ‘search.Rmd’

SUMMARY: processing the following file failed:
  ‘local_setup.Rmd’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) solve_pH_from_AT.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:93: Lost braces in \itemize; meant \describe ?
install log ‘’ does not exist
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Maintainer: ‘livio finos <livio@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "livio",
                    family = "finos",
                    role = c("aut", "cre"),
                    email = "livio@stat.unipd.it")
as necessary.
Fatal error: cannot create 'R_TempDir'
install log ‘’ does not exist
Package required but not available: ‘aweSOM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andreas Dominik <andreas.dominik@mni.thm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Dominik",
                    role = c("aut", "cre"),
                    email = "andreas.dominik@mni.thm.de")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘SongEvo.Rmd’ using rmarkdown

Quitting from SongEvo.Rmd:157-159 [Load Hmisc package for plotting functions]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Hmisc'
---
Backtrace:
    x
 1. \-base::library("Hmisc")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SongEvo.Rmd' failed with diagnostics:
there is no package called 'Hmisc'
--- failed re-building ‘SongEvo.Rmd’

SUMMARY: processing the following file failed:
  ‘SongEvo.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Charles Berry <ccberry@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Berry",
                    role = c("aut", "cre"),
                    email = "ccberry@ucsd.edu")
as necessary.
Maintainer: ‘Ed Baker <ed@ebaker.me.uk>’

Reading Rd files failed with message:
  cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘soundSpeed.Rd’
Running massageExamples to create ‘sonicscrewdriver-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpk64YDd/file24fae8275c0650/naturalFrequency.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpkMp7Vy/file25678dc181690': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpkMp7Vy/file25678dc181690': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘"Zeb Burke-Conte" <zmbc@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeb",
                      family = "Burke-Conte",
                      role = "aut"),
               person(given = "\"Zeb",
                      family = "Burke-Conte\"",
                      role = "cre",
                      email = "zmbc@uw.edu"))
as necessary.
Maintainer: ‘Weimin Zhang <zhangwm@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘asrm.Rd’:
    https://doi.org/10.1111/biom.12997
  File ‘sorocs.Rd’:
    https://doi.org/10.1111/biom.12997
Maintainer: ‘Aurnov Chattopadhyay <aurnovcy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aurnov",
                    family = "Chattopadhyay",
                    role = c("aut", "cre"),
                    email = "aurnovcy@gmail.com")
as necessary.
install log ‘’ does not exist
Maintainer: ‘Spencer Graves <spencer.graves@prodsyse.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Graves",
                      role = c("cre", "aut", "cph"),
                      email = "spencer.graves@prodsyse.com"),
               person(given = "Sundar",
                      family = "Dorai-Raj",
                      role = "aut"),
               person(given = "Romain",
                      family = "Francois",
                      role = "ctb"))
as necessary.
install log ‘’ does not exist
Maintainer: ‘Bruno Silva <bmsasilva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Silva",
                    role = c("aut", "cre"),
                    email = "bmsasilva@gmail.com")
as necessary.
Packages required but not available: 'dbplyr', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "J."),
                      family = "Villanueva-Rivera",
                      role = c("aut", "cre"),
                      email = "ljvillanueva@coquipr.com"),
               person(given = c("Bryan", "C."),
                      family = "Pijanowski",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Marcelino <dmarcelino@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Marcelino",
                    role = c("aut", "cre"),
                    email = "dmarcelino@live.com")
as necessary.

The BugReports field in DESCRIPTION has
  http://github.com/danielmarcelino/soundexBR
which should likely be
  http://github.com/danielmarcelino/soundexBR/issues
instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘soundexBR.Rd’:
    http://dx.doi.org/10.2139/ssrn.2320547
Running massageExamples to create ‘soundgen-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpZImxCs/file2537087fd986b/getLoudness.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ..........Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpLCG6Ji/ltx2539284c127a47/getEntropy.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
No examples, no tests, no vignettes
Package required but not available: ‘geomorph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "Daniel"),
                    family = "Young",
                    role = c("aut", "cre"),
                    email = "my4@sanger.ac.uk")
as necessary.
Package required but not available: ‘Seurat’

Package suggested but not available for checking: ‘DropletUtils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘gridlayout’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Matheus Dalsente Krause <krause.d.matheus@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘simNMix.Rd’, ‘spAbund.Rd’, ‘spDS.Rd’, ‘spNMix.Rd’, ‘summary.DS.Rd’, ‘summary.NMix.Rd’, ‘summary.abund.Rd’, ‘summary.lfMsAbund.Rd’, ‘summary.lfMsNMix.Rd’, ‘summary.msAbund.Rd’, ‘summary.msDS.Rd’, ‘summary.msNMix.Rd’, ‘summary.sfMsAbund.Rd’, ‘summary.sfMsDS.Rd’, ‘summary.sfMsNMix.Rd’, ‘summary.spAbund.Rd’, ‘summary.spDS.Rd’, ‘summary.spNMix.Rd’, ‘summary.svcAbund.Rd’, ‘summary.svcMsAbund.Rd’, ‘svcAbund.Rd’, ‘svcMsAbund.Rd’, ‘waicAbund.Rd’
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
problem found in ‘generate_sobol_owen_set.Rd’
cannot open the connection
cannot open the connection
problems found in ‘primaries.Rd’, ‘print.Rd’
Maintainer: ‘Glenn Davis <gdavis@gluonics.com>’

Found the following (possibly) invalid file URI:
  URI: <gdavis@gluonics.com>
    From: inst/doc/isotherms.pdf
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
Maintainer: ‘Vilmantas Gegzna <GegznaV@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: /commits/master
    From: README.md
Maintainer: ‘Anne Chao <chao@stat.nthu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne",
                      family = "Chao",
                      role = c("aut", "cre"),
                      email = "chao@stat.nthu.edu.tw"),
               person(given = c("K.", "H."),
                      family = "Ma",
                      role = "aut"),
               person(given = c("T.", "C."),
                      family = "Hsieh",
                      role = "aut"),
               person(given = "Chun-Huo",
                      family = "Chiu",
                      role = "aut"))
as necessary.
Packages required but not available: 'spatstat', 'sparr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jose Manuel Vera Oteo <vera.josemanuel@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘geocode_cadastral.Rd’:
    \keyword{cadastre,}
    \keyword{geocoding,}
    \keyword{latitude,}
    \keyword{longitude,}
  File ‘to_number.Rd’:
    \keyword{currency,}
    \keyword{euros,}
    \keyword{money,}
  File ‘to_words.Rd’:
    \keyword{integers,}
    \keyword{money,}
    \keyword{spanish,}
install log ‘’ does not exist
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmph6y6qP/file24d295740cbdd1/span_grs.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running ‘testthat.R’ [23s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(spant)
  spant 4.1.0
  
  Attaching package: 'spant'
  
  The following object is masked from 'package:stats':
  
      sd
  
  > 
  > test_check("spant")
  Saving _problems/test_nifti-28.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 16 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_nifti.R:28:3'): nifti MRS data can be written and read back from disk ──
  Expected `sim_mrs$data` to equal `sim_mrs_nii$data`.
  Differences:
  Attributes: < Names: 1 string mismatch >
  Attributes: < Length mismatch: comparison on first 1 components >
  Attributes: < Component 1: Modes: numeric, externalptr >
  Attributes: < Component 1: Lengths: 7, 1 >
  Attributes: < Component 1: target is numeric, current is externalptr >
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 16 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘abfit-baseline-opts.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpAtk96h/Rf25d0716eebdf51': No space left on device

Quitting from abfit-baseline-opts.Rmd:51-55 [abfit_flex]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from abfit-baseline-opts.Rmd:51-55 [abfit_flex]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'abfit-baseline-opts.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘abfit-baseline-opts.Rmd’

--- re-building ‘spant-basis-simulation.Rmd’ using rmarkdown
--- finished re-building ‘spant-basis-simulation.Rmd’

--- re-building ‘spant-intro.Rmd’ using rmarkdown
--- finished re-building ‘spant-intro.Rmd’

--- re-building ‘spant-metabolite-simulation.Rmd’ using rmarkdown
--- finished re-building ‘spant-metabolite-simulation.Rmd’

--- re-building ‘spant-preprocessing.Rmd’ using rmarkdown
--- finished re-building ‘spant-preprocessing.Rmd’

SUMMARY: processing the following file failed:
  ‘abfit-baseline-opts.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...........Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp3IFbta/ltx262df75cb825f/gausswin_2d.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Witten",
                      role = "cre",
                      email = "dwitten@u.washington.edu"))
as necessary.
Maintainer: ‘Aki Ariga <chezou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aki",
                    family = "Ariga",
                    role = c("aut", "cre"),
                    email = "chezou@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chezou/sparkavro
which should likely be
  https://github.com/chezou/sparkavro/issues
instead.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sparklyr', 'sparklyr.nested'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ramnath Vaidyanathan <ramnath.vaidya@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Packages required but not available: 'dbplyr', 'sparklyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

Package suggested but not available for checking: ‘parsnip’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘sparr’

Package suggested but not available for checking: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex Gibberd <a.gibberd@lancaster.ac.uk>’

The Description field contains
  <arXiv:2303.11892>. Options to use classic multivariate Kalman filter
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

The Description field contains
  classifier from Ramey et al. (2017) <arXiv:1602.01182>. Other
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error: inferior call failed
Execution halted
Package required but not available: ‘refund’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jelmer Ypma <uctpjyy@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jelmer",
                    family = "Ypma",
                    role = c("aut", "cre"),
                    email = "uctpjyy@ucl.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
install log ‘’ does not exist
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrew Zammit-Mangion <andrewzm@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Takahashi_Davis.Rd’:
    \keyword{factor,}
  File ‘cholsolve.Rd’:
    \keyword{factor,}
  File ‘cholsolveAQinvAT.Rd’:
    \keyword{factor,}
checkRd: (-1) cholsolveAQinvAT.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Solve the equation X = AQ^{-1}t(A) under permutations}
       |                                  ^
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Line",
                      family = "Clemmensen",
                      role = "aut",
                      email = "lhc@imm.dtu.dk"),
               person(given = c("contributions", "by", "Max"),
                      family = "Kuhn",
                      role = "aut"),
               person(given = "Max",
                      family = "Kuhn",
                      role = "cre",
                      email = "mxkuhn@gmail.com"))
as necessary.
Maintainer: ‘Riccardo Rastelli <riccardoras@gmail.com>’

The Description field contains
  <arXiv:1808.09262>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam B Kashlak <kashlak@ualberta.ca>’

The Description field contains
  search method outlined in Kashlak and Kong (2019) <arXiv:1705.02679>
  and in Kashlak (2019) <arXiv:1903.10988>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |    ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |             ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                      ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                   ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                            ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                                     ^
Maintainer: ‘Lax Chan <laxchan77@gmail.com>’

The Description field contains
  W., Vincent, K (2019) <arXiv:1902.05156>. This package explicitly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘N. Benjamin Erichson <erichson@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("N.", "Benjamin"),
                      family = "Erichson",
                      role = c("aut", "cre"),
                      email = "erichson@uw.edu"),
               person(given = "Peng",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Sasha",
                      family = "Aravkin",
                      role = "aut"))
as necessary.

The Description field contains
  Erichson et al. (2018) <arXiv:1804.00341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘recipes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The Description field contains
  <arXiv:1701.06967>. In the model, a regularization term is added to the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/GjjvdBurg/SparseStep
which should likely be
  https://github.com/GjjvdBurg/SparseStep/issues
instead.
Maintainer: ‘Simone Vazzoler <svazzole@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'FactoMineR', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marius Placzek <marius.placzek@med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "T.",
                      family = "Asendorf",
                      role = "aut"),
               person(given = "R.",
                      family = "Gera",
                      role = "aut"),
               person(given = "S.",
                      family = "Islam",
                      role = "aut"),
               person(given = "M.",
                      family = "Harden",
                      role = "aut"),
               person(given = "M.",
                      family = "Placzek",
                      role = "aut"),
               person(given = "Marius",
                      family = "Placzek",
                      role = "cre",
                      email = "marius.placzek@med.uni-goettingen.de"))
as necessary.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Altieri Linda <linda.altieri@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "L.",
                      family = "Altieri",
                      role = "aut"),
               person(given = "D.",
                      family = "Cocchi",
                      role = "aut"),
               person(given = "G.",
                      family = "Roli",
                      role = "aut"),
               person(given = "Altieri",
                      family = "Linda",
                      role = "cre",
                      email = "linda.altieri@unibo.it"))
as necessary.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fabio Sigrist <fabiosigrist@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fabio",
                      family = "Sigrist",
                      role = c("aut", "cre"),
                      email = "fabiosigrist@gmail.com"),
               person(given = c("Hans", "R."),
                      family = "Kuensch",
                      role = "aut"),
               person(given = c("Werner", "A."),
                      family = "Stahel",
                      role = "aut"))
as necessary.
Maintainer: ‘Rounak Dey <deyrnk@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rounak",
                      family = "Dey",
                      role = c("aut", "cre"),
                      email = "deyrnk@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"))
as necessary.
Packages required but not available: 'plotly', 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tuomas Rajala <tuomas.rajala@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tuomas",
                    family = "Rajala",
                    role = c("aut", "cre"),
                    email = "tuomas.rajala@iki.fi")
as necessary.
install log ‘’ does not exist
install log ‘’ does not exist
Maintainer: ‘David Clifford <david.clifford+CRAN@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Clifford",
                    role = c("aut", "cre"),
                    email = "david.clifford+CRAN@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Javier Garcia-Pintado <jgarciapintado@marum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "Garcia-Pintado",
                    role = c("aut", "cre"),
                    email = "jgarciapintado@marum.de")
as necessary.
checkRd: (-1) distSG.Rd:40: Lost braces; missing escapes or markup?
    40 |   matrix and weight matrix (plus a matrix with {eID} identifiers
       |                                                ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘SpatialKDE.Rmd’ using rmarkdown

Quitting from SpatialKDE.Rmd:25-31 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tmap'
---
Backtrace:
    ▆
 1. └─base::library(tmap)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SpatialKDE.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building ‘SpatialKDE.Rmd’

SUMMARY: processing the following file failed:
  ‘SpatialKDE.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Nobin Chandra Paul<ncp375@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nobin", "Chandra"),
                    family = "Paul",
                    role = c("aut", "cre"),
                    email = "ncp375@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Running massageExamples to create ‘spatialreg-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp1hUO9o/file26165249fd1d12/ML_models.R': No space left on device
Execution halted
 NONE
install log ‘’ does not exist
Running examples in ‘spatialrisk-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: choropleth
> ### Title: Create choropleth map
> ### Aliases: choropleth
> 
> ### ** Examples
> 
> test <- summarise_points_by_polygon(nl_provincie, insurance, "amount")
109 points are outside any polygon.
> choropleth(test, value = "amount_sum")
Error: tmap is needed for this function to work. Install it via install.packages("tmap")
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘fixed-radius-concentration.Rmd’ using rmarkdown

Quitting from fixed-radius-concentration.Rmd:108-121 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! mapview is needed for this function to work. Install it via install.packages("mapview")
---
Backtrace:
    ▆
 1. ├─base::plot(hotspot)
 2. └─spatialrisk:::plot.hotspot(hotspot)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fixed-radius-concentration.Rmd' failed with diagnostics:
mapview is needed for this function to work. Install it via install.packages("mapview")
--- failed re-building ‘fixed-radius-concentration.Rmd’

--- re-building ‘visualisation.Rmd’ using rmarkdown
--- finished re-building ‘visualisation.Rmd’

SUMMARY: processing the following file failed:
  ‘fixed-radius-concentration.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpscRH31/ltx26e239737d83df/choropleth.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘rsample’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dixon’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Maintainer: ‘Yili Hong <yilihong@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yili",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "yilihong@vt.edu"),
               person(given = "Li",
                      family = "Xu",
                      role = "aut"),
               person(given = "Yimeng",
                      family = "Xie",
                      role = "aut"),
               person(given = "Zhongnan",
                      family = "Jin",
                      role = "aut"))
as necessary.

The Description field contains
  al. (2018, <arXiv:1809.06418>). The package also contains the Lyme
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'spatstat', 'spatstat.linnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Rd conversion errors:
Converting parsed Rd's to LaTeX ...............Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpkioVQj/ltx27ca484b5d6ffa/localpcf.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Running massageExamples to create ‘spatstat.geom-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpCigWbO/file2698fedd8dcbd/rQuasi.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ..........Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpBqiDnw/ltx26d97b7a41b87c/connected.ppp.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'spatstat.linnet', 'spatstat'

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.univar', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model',
  'spatstat.linnet', 'spatstat', 'rpanel', 'tcltk'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spatstat.linnet', 'spatstat'

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.sparse', 'spatstat.univar',
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat.linnet', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spatstat.linnet.Rcheck/00install.out’ for details.
Package required but not available: ‘spatstat’

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.univar', 'spatstat.sparse',
  'spatstat.geom', 'spatstat.random', 'spatstat.explore',
  'spatstat.model', 'spatstat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat.linnet’

Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.univar', 'spatstat.geom',
  'spatstat.random', 'spatstat.explore', 'spatstat.model',
  'spatstat.linnet'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpcTZaGn/file25a3821d32dcac/gridadjacencymatrix.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpEW1goL/file25695ca4f6d86/quantile.ewcdf.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp8oCodO/file2568c31cbec4ad/fastFindInterval.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Benjamin M. Taylor <benjamin.taylor.software@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M."),
                      family = "Taylor",
                      role = c("aut", "cre"),
                      email = "benjamin.taylor.software@gmail.com"),
               person(given = c("Barry", "S.", "Rowlingson", "Additional", "contributions", "Ziyu"),
                      family = "Zheng",
                      role = "aut"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘expand_grid_cpp.Rd’, ‘fit_cpp_MvT.Rd’, ‘forceSymmetry_cpp.Rd’, ‘models_dens_MvT.Rd’, ‘post_draws_MvT.Rd’, ‘pred_bayesMvLMconjugate.Rd’, ‘predict.spBPS.Rd’, ‘r_pred_cond_MvT.Rd’, ‘r_pred_joint_MvT.Rd’, ‘r_pred_marg_MvT.Rd’
Maintainer: ‘Francesco Pantalone <pantalone.fra@gmail.com>’

The Description field contains
  <arXiv:1710.09116>. The implementation has been done in C++ through the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Axel",
                      family = "Gandy",
                      role = c("aut", "cre"),
                      email = "a.gandy@imperial.ac.uk"),
               person(given = c("Jan", "Terje"),
                      family = "Kvaloy.",
                      role = "aut",
                      email = "jan.t.kvaloy@uis.no"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Ning Hao <nhao@math.arizona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yue", "S."),
                      family = "Niu",
                      role = "aut"),
               person(given = "Ning",
                      family = "Hao",
                      role = c("aut", "cre"),
                      email = "nhao@math.arizona.edu"),
               person(given = "Bin",
                      family = "Dong",
                      role = "aut"))
as necessary.
Maintainer: ‘Ziang Zhang <aguero.zhang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "aguero.zhang@mail.utoronto.ca"),
               person(given = "Lei",
                      family = "Sun",
                      role = "aut"))
as necessary.

The Description field contains
  Accounting for Covariate Effects" <arXiv:2203.15641>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Shuichi Kawano <skawano@math.kyushu-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shuichi",
                    family = "Kawano",
                    role = c("aut", "cre"),
                    email = "skawano@math.kyushu-u.ac.jp")
as necessary.
Package required but not available: ‘rcarbon’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Roger Bivand <Roger.Bivand@nhh.no>’

Reading Rd files failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘CO69.Rmd’ using rmarkdown
--- finished re-building ‘CO69.Rmd’

--- re-building ‘nb.Rmd’ using rmarkdown
--- finished re-building ‘nb.Rmd’

--- re-building ‘nb_sf.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpPnYeKQ/Rf26a3da1629f215': No space left on device

Quitting from nb_sf.Rmd:274-276 [unnamed-chunk-30]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from nb_sf.Rmd:274-276 [unnamed-chunk-30]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'nb_sf.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘nb_sf.Rmd’

--- re-building ‘sids.Rmd’ using rmarkdown
--- finished re-building ‘sids.Rmd’

--- re-building ‘subgraphs.Rmd’ using rmarkdown
--- finished re-building ‘subgraphs.Rmd’

SUMMARY: processing the following file failed:
  ‘nb_sf.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprAXxQ7/ltx26e1582bb76b19/graphneigh.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘federov.R’
Maintainer: ‘Alexios Ghalanos <alexios@4dscape.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexios",
                    family = "Ghalanos",
                    role = c("aut", "cre"),
                    email = "alexios@4dscape.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘separationplot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Martinez-Lopez",
                      role = c("aut", "cre"),
                      email = "javi.martinez.lopez@gmail.com"),
               person(given = "Babak",
                      family = "Naimi",
                      role = "aut",
                      email = "naimi.b@gmail.com"),
               person(given = "Julia",
                      family = "Martinez-Fernandez",
                      role = "aut",
                      email = "juliamf@um.es"))
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [3s/4s] OK
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/speakr.Rcheck/00install.out’ for details.
Maintainer: ‘Charlie Beirnaert <charlie_beirnaert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlie",
                      family = "Beirnaert",
                      role = c("aut", "cre"),
                      email = "charlie_beirnaert@icloud.com"),
               person(given = c("Trung", "Nghia"),
                      family = "Vu",
                      role = "aut"),
               person(given = "Pieter",
                      family = "Meysman",
                      role = "aut"),
               person(given = "Kris",
                      family = "Laukens",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Valkenborg",
                      role = "aut"))
as necessary.
checkRd: (-1) findRef.Rd:39: Lost braces
    39 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
checkRd: (-1) hClustAlign.Rd:70: Lost braces
    70 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
install log ‘’ does not exist
Error(s) in re-building vignettes:
  ...
--- re-building ‘Readme.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpToWO8f/Rf258e065edb468c': No space left on device

Quitting from Readme.Rmd:88-90 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Readme.Rmd:88-90 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Readme.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Readme.Rmd’

SUMMARY: processing the following file failed:
  ‘Readme.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
cannot open the connection
problem found in ‘dot-guide.numeric.Rd’
Package required but not available: ‘ggraph’

Packages suggested but not available for checking:
  'broom.mixed', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) FitAkdParameters.Rd:23: Lost braces; missing escapes or markup?
    23 |       p(y|ens) = 1 / K * sum {dnorm(y, z.i, s)} \cr
       |                              ^
Package required but not available: ‘epiR’

Package suggested but not available for checking: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Seilmayer <martin.seilmayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "martin.seilmayer@gmail.com")
as necessary.
Package required but not available: ‘rgee’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Packages required but not available:
  'survminer', 'riskRegression', 'caret', 'caretEnsemble'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lomb’

Package suggested but not available for checking: ‘qs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christopher R John <chris.r.john86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christopher", "R"),
                      family = "John",
                      role = c("aut", "cre"),
                      email = "chris.r.john86@gmail.com"),
               person(given = "David",
                      family = "Watson",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘innprod.R’ ‘utils.R’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp12RDyf/ltx2598c65f872fce/new_spedecon_gtwid.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Castor", "Guisande"),
                    family = "Gonzalez",
                    role = c("aut", "cre"),
                    email = "castor@uvigo.es")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpuQCxOu/ltx26123a5c04cf02/sc.test.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = c("Elizabeth", "A."),
                      family = "Thompson",
                      role = "aut",
                      email = "eathomp@u.washington.edu"))
as necessary.
Packages required but not available: 'abjutils', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michal",
                      family = "Juraska",
                      role = c("aut", "cre"),
                      email = "mjuraska@fredhutch.org"),
               person(given = c("with", "contributions", "from", "Peter", "B."),
                      family = "Gilbert",
                      role = "aut",
                      email = "pgilbert@scharp.org"),
               person(given = "Xiaomin",
                      family = "Lu",
                      role = "aut",
                      email = "xlu2@phhp.ufl.edu"),
               person(given = "Min",
                      family = "Zhang",
                      role = "aut",
                      email = "mzhangst@umich.edu"),
               person(given = "Marie",
                      family = "Davidian",
                      role = "aut",
                      email = "davidian@stat.ncsu.edu"),
               person(given = c("Anastasios", "A."),
                      family = "Tsiatis",
                      role = "aut",
                      email = "tsiatis@stat.ncsu.edu"))
as necessary.
Maintainer: ‘Selva Prabhakaran <selva86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Selva",
                    family = "Prabhakaran",
                    role = c("aut", "cre"),
                    email = "selva86@gmail.com")
as necessary.
Package required but not available: ‘textclean’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maximilian Lange <maximilian-lange@t-online.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = c("aut", "cre"),
                      email = "maximilian-lange@t-online.de"),
               person(given = "Sven",
                      family = "Lautenbach",
                      role = "aut"),
               person(given = "Claudia",
                      family = "Raedig",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Brenning <alexander.brenning@uni-jena.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpzBAwl5/ltx269d11657be1a1/represampling_kmeans_bootstrap.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘SpeTestNP.Rmd’ using rmarkdown

Quitting from SpeTestNP.Rmd:367-378 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'AER'
---
Backtrace:
    ▆
 1. └─base::library(AER)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SpeTestNP.Rmd' failed with diagnostics:
there is no package called 'AER'
--- failed re-building ‘SpeTestNP.Rmd’

SUMMARY: processing the following file failed:
  ‘SpeTestNP.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yang Liu <yliu87@umd.edu>’

The Description field contains
  <arXiv:2303.10079>. Both the conditional densities of observed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) cylinder.counts.Rd:61-62: Lost braces
    61 | nucleotide, so that \code{a.c} represents the set {\code{aac}, \code{acc}, 
       |                                                   ^
install log ‘’ does not exist
Packages required but not available: 'semPlot', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yijun Xie <yijun.xie@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijun",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "yijun.xie@uwaterloo.ca")
as necessary.
Maintainer: ‘Jongmin Lee <jongminlee9218@gmail.com>’

The Description field contains
  H.-S. (2020) <arXiv:2003.02578>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
install log ‘’ does not exist
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Maintainer: ‘John P. Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "P."),
                      family = "Nolan",
                      role = c("aut", "cre"),
                      email = "jpnolan@american.edu"),
               person(given = "American",
                      family = "University",
                      role = "aut"))
as necessary.
checkRd: (-1) adaptIntegrateSpherePolar.Rd:14: Lost braces
    14 | code{adaptIntegrateBallPolar()} will likely miss these abrupt changes and give
       |     ^
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpIDHYjk/ltx26b0ea13a9d070/summary.sphet.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
Package required but not available: ‘labelled’

Packages suggested but not available for checking:
  'flextable', 'haven', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bob Rudis <bob@rud.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bob",
                      family = "Rudis",
                      role = c("aut", "cre"),
                      email = "bob@rud.is",
                      comment = "bob@rud.is"),
               person(family = "SEOmoz"),
               person(family = "Inc",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘spider-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpGezxYt/file25f08572171b8/plot.haploAccum.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Udaya B. Kogalur <ubk@kogalur.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hemant",
                      family = "Ishwaran",
                      role = "aut",
                      email = "hemant.ishwaran@gmail.com"),
               person(given = c("Udaya", "B."),
                      family = "Kogalur",
                      role = "cre",
                      email = "ubk@kogalur.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arturas Rozenas <ar199@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arturas",
                    family = "Rozenas",
                    role = c("aut", "cre"),
                    email = "ar199@nyu.edu")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpqPvAxT/file26174e7664ed1/data.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Johannes W. Dietrich <johannes.dietrich@ruhr-uni-bochum.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Warning in file() :
  cannot open file '/tmp/RtmpfHwaCg/Rf25d6a321796731': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Maintainer: ‘Sam Levin <levisc8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gudrun",
                      family = "Carl",
                      role = c("cre", "aut")),
               person(given = "Ingolf",
                      family = "Kuehn",
                      role = "aut"),
               person(given = "Sam",
                      family = "Levin",
                      role = c("aut", "cre"),
                      email = "levisc8@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tourr', 'cassowaryr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tourr', 'plotly'

Package suggested but not available for checking: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
install log ‘’ does not exist
Maintainer: ‘Julien Chiquet <julien.chiquet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Julien",
                      family = "Chiquet",
                      role = c("aut", "cre"),
                      email = "julien.chiquet@gmail.com"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"),
               person(given = "Pierre-Alexandre",
                      family = "Mattei",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘spinyReg.Rd’:
    \keyword{models,}
Maintainer: ‘Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Melantha Wang <wang.melantha@gmail.com>’

The Description field contains
  Cost Experience Simulator" <arXiv:2109.04058>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jinseob Kim <jinseob2kim@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpfi0Om7/file26161f45c13361': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpfi0Om7/file26161f45c13361': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘mosaic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
Maintainer: ‘Sam Parsons <sam.parsons@radboudumc.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/sdparsons/splithalf
which should likely be
  https://github.com/sdparsons/splithalf/issues
instead.
install log ‘’ does not exist
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiJuNwg/ltx2656e1564fe636/apply_split_indexes_to_stratum.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.

The Description field contains
  Christidis, Van Aelst and Zamar (2019) <arXiv:1812.05678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘timedef.Rd’, ‘timespan.Rd’, ‘timseq.Rd’, ‘timznc.Rd’, ‘timznlst.Rd’, ‘timzns.Rd’, ‘tsequen.Rd’
install log ‘’ does not exist
Running massageExamples to create ‘spMC-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpA1vWct/file24d1d440c0210a/embed_MC.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5eeovH/ltx28bcd915152d7f/spmodel-package.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘addlearn_local.R’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spnaf.Rcheck/00install.out’ for details.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5V1EFS/file24e36538db0643': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp5V1EFS/file24e36538db0643': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘ridigbio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
install log ‘’ does not exist
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dawid Kałędkowski <dawid.kaledkowski@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Feiyu Yue <yuefyopals@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihao",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Feiyu",
                      family = "Yue",
                      role = c("aut", "cre"),
                      email = "yuefyopals@gmail.com"))
as necessary.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lennard van Wanrooij <lennardvanwanrooij@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lennard",
                    family = "van Wanrooij",
                    role = c("aut", "cre"),
                    email = "lennardvanwanrooij@gmail.com")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Error(s) in re-building vignettes:
  ...
--- re-building ‘spotr-intro.Rmd’ using rmarkdown

Quitting from spotr-intro.Rmd:13-20 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'brms'
---
Backtrace:
    ▆
 1. └─base::library(brms)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spotr-intro.Rmd' failed with diagnostics:
there is no package called 'brms'
--- failed re-building ‘spotr-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘spotr-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'car', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ming Wang <willnju@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "willnju@gmail.com"),
               person(given = "Yongtao",
                      family = "Guan",
                      role = "aut"),
               person(given = "Kun",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Nobin Chandra Paul<nobin.niasm@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nobin", "Chandra"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "nobin.niasm@outlook.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = "Ankur",
                      family = "Biswas",
                      role = "aut"),
               person(given = "Tauqueer",
                      family = "Ahmad",
                      role = "aut"),
               person(given = c("Prachi", "Misra"),
                      family = "Sahoo",
                      role = "aut"))
as necessary.
install log ‘’ does not exist
Package required but not available: ‘rsample’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [8s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  > 
  > test_check("spray")
  Loading required package: spray
  
  Attaching package: 'spray'
  
  The following objects are masked from 'package:base':
  
      pmax, pmin
  
  Saving _problems/test_aab-14.R
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 201 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_aab.R:14:9'): test suite aab ───────────────────────────────────
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─spray (local) checker1(rspray(8)) at test_aab.R:68:9
   2.   └─testthat::expect_silent(jj <- -(S * 0)) at test_aab.R:14:9
   3.     └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   4.       └─testthat (local) .capture(...)
   5.         └─withr::with_output_sink(...)
   6.           └─withr:::set_output_sink(file = new, append = append, split = split)
   7.             └─withr:::output_sink(file = file, append = append, split = split)
   8.               └─base::sink(file = file, append = append, type = "output", split = split)
   9.                 └─base::file(file, if (append) "a" else "w")
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 201 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘DongHyuk Lee <leedhyuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "DongHyuk",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "leedhyuk@gmail.com"),
               person(given = "Samiran",
                      family = "Sinha",
                      role = "aut"))
as necessary.
install log ‘’ does not exist
Maintainer: ‘Fei Zhou <fei.zhou@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fei",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "fei.zhou@outlook.com"),
               person(given = "Yuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xi",
                      family = "Lu",
                      role = "aut"),
               person(given = "Jie",
                      family = "Ren",
                      role = "aut"),
               person(given = "Cen",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Adrienne M. Wootten <amwootte@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adrienne", "M."),
                    family = "Wootten",
                    role = c("aut", "cre"),
                    email = "amwootte@ou.edu",
                    comment = "University of Oklahoma")
as necessary.
install log ‘’ does not exist
Package required but not available: ‘MBESS’

Package suggested but not available for checking: ‘diffviewer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘spsComps-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpWFimFd/file26549c7ed6a6c4/textInputGroup.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Lauren Grant <pacele@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lauren",
                      family = "Grant",
                      role = c("aut", "cre"),
                      email = "pacele@vcu.edu"),
               person(given = "David",
                      family = "Wheeler",
                      role = "aut"))
as necessary.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.
Maintainer: ‘Renato Panaro <renatovp@ime.usp.br>’

The Description field contains
  right-censored data. RV Panaro (2020) <arXiv:2003.10548>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
install log ‘’ does not exist
Maintainer: ‘Matthew E. Aiello-Lammens <matt.lammens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'FactoMineR', 'factoextra', 'car'

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'olsrr', 'FactoMineR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
File ‘SQLFormatteR/libs/SQLFormatteR.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Wilson Freitas <wilson.freitas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilson",
                    family = "Freitas",
                    role = c("aut", "cre"),
                    email = "wilson.freitas@gmail.com")
as necessary.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Pierrick Roger <pierrick.roger@cea.fr>’

Reading Rd files failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpqfLN6T/Rf267ce71e42306f': No space left on device

Quitting from intro.Rmd:143-145 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from intro.Rmd:143-145 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'intro.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
install log ‘’ does not exist
install log ‘’ does not exist
install log ‘’ does not exist
Maintainer: ‘Martin Aryee <martin.aryee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhijin",
                      family = "Wu",
                      role = "aut",
                      comment = "Jean"),
               person(given = "Martin",
                      family = "Aryee",
                      role = c("aut", "cre"),
                      email = "martin.aryee@gmail.com"))
as necessary.
Maintainer: ‘Aron C. Eklund <aroneklund@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aron", "C."),
                    family = "Eklund",
                    role = c("aut", "cre"),
                    email = "aroneklund@gmail.com")
as necessary.
Packages required but not available: 'fdacluster', 'fdasrvf', 'roahd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggpubr', 'plotly', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'brms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Le Rouzic",
                    role = c("aut", "cre"),
                    email = "arnaud.le-rouzic@universite-paris-saclay.fr")
as necessary.
install log ‘’ does not exist
Maintainer: ‘Attila Csala <a@csala.me>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sRDA.Rd’:
    https://doi.org/10.1093/bioinformatics/btx374
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpxRdlvW/ltx1e279f16671dc4/sCCA.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Harriet Jane Goers <hgoers@umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Harriet", "Jane"),
                    family = "Goers",
                    role = c("aut", "cre"),
                    email = "hgoers@umd.edu")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptdEGei/ltx1dd63f55888352/groups.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steffen",
                      family = "Nestler",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
install log ‘’ does not exist
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9j98X1/file2680ad4c942949/select_by_mask.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
install log ‘’ does not exist
Maintainer: ‘Lukas Beule <lukas.beule@julius-kuehn.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [24s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(srvyr)
  
  Attaching package: 'srvyr'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > 
  > test_check("srvyr")
  Saving _problems/test_database-177.R
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 416 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_database.R:177:3'): Can convert from survey DB-backed surveys to srvyr ones ──
  <rlib_error_package_not_found/rlang_error/error/condition>
  Error in `check_dbplyr()`: The package "dbplyr" is required to communicate with database backends.
  Backtrace:
      ▆
   1. ├─srvyr::as_survey(dbclus1) at test_database.R:177:3
   2. └─srvyr:::as_survey.survey.design2(dbclus1)
   3.   └─srvyr:::as_tbl_svy(.data)
   4.     ├─dplyr::tbl(x$db$connection, x$db$tablename)
   5.     └─dplyr:::tbl.DBIConnection(x$db$connection, x$db$tablename)
   6.       └─dplyr::check_dbplyr()
   7.         └─rlang::check_installed("dbplyr", "to communicate with database backends.")
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 416 ]
  Error:
  ! Test failures.
  Warning message:
  call dbDisconnect() when finished working with a connection 
  Execution halted
Maintainer: ‘Kelli F. Johnson <kelli.johnson@noaa.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [20s/23s] OK
Packages required but not available: 'tsBSS', 'ICtest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘ssc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coBC
> ### Title: CoBC method
> ### Aliases: coBC
> 
> ### ** Examples
> 
> 
> library(ssc)
> 
> ## Load Wine data set
> data(wine)
> 
> cls <- which(colnames(wine) == "Wine")
> x <- wine[, -cls] # instances without classes
> y <- wine[, cls] # the classes
> x <- scale(x) # scale the attributes
> 
> ## Prepare data
> set.seed(20)
> # Use 50% of instances for training
> tra.idx <- sample(x = length(y), size = ceiling(length(y) * 0.5))
> xtrain <- x[tra.idx,] # training instances
> ytrain <- y[tra.idx]  # classes of training instances
> # Use 70% of train instances as unlabeled set
> tra.na.idx <- sample(x = length(tra.idx), size = ceiling(length(tra.idx) * 0.7))
> ytrain[tra.na.idx] <- NA # remove class information of unlabeled instances
> 
> # Use the other 50% of instances for inductive testing
> tst.idx <- setdiff(1:length(y), tra.idx)
> xitest <- x[tst.idx,] # testing instances
> yitest <- y[tst.idx] # classes of testing instances
> 
> ## Example: Training from a set of instances with 1-NN as base classifier.
> set.seed(1)
> m1 <- coBC(x = xtrain, y = ytrain, 
+            learner = caret::knn3, 
+            learner.pars = list(k = 1),
+            pred = "predict")
Error in loadNamespace(x) : there is no package called ‘caret’
Calls: coBC ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp91guZ7/Rf26a0ce3f89119c': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpxhA09M/Rf26a55916a5b89': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Running massageExamples to create ‘ssddata-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpEntFWE/file269f176cfc195b/ccme_cadmium.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpK1yj0d/ltx26a5034f0998f9/ccme_silver.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘SingleCaseES’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yang Liu <zjubioly@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "zjubioly@gmail.com"),
               person(given = "Francesca",
                      family = "Chiaromonte",
                      role = "aut"),
               person(given = "Bing",
                      family = "Li",
                      role = "aut"))
as necessary.
cannot open the connection
cannot open the connection
problems found in ‘ssd_wqg_bc.Rd’, ‘ssd_wqg_burrlioz.Rd’
Package required but not available: ‘MESS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘ssfa-package.Rd’, ‘ssfa.Rd’, ‘summary.Rd’, ‘u.ssfa.Rd’
Error(s) in re-building vignettes:
  ...
--- re-building ‘ssfavignette.Rnw’ using Sweave
Warning in file() :
  cannot open file '/tmp/RtmprYMEZP/Rf272ef84dfffa6': No space left on device
Error: processing vignette 'ssfavignette.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘ssfavignette.Rnw’

SUMMARY: processing the following file failed:
  ‘ssfavignette.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Christiana Kartsonaki <christiana.kartsonaki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christiana",
                    family = "Kartsonaki",
                    role = c("aut", "cre"),
                    email = "christiana.kartsonaki@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'DescTools', 'HLAtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'meta', 'netmeta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Megan Orr <megan.orr@ndsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Megan",
                      family = "Orr",
                      role = c("aut", "cre"),
                      email = "megan.orr@ndsu.edu"),
               person(given = "Peng",
                      family = "Liu",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Luis Benites Sanchez <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"),
               person(given = c("Clecio", "da", "Silva"),
                      family = "Ferreira",
                      role = "aut"))
as necessary.
install log ‘’ does not exist
Package required but not available: ‘DescTools’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Curtis <peterrobertcurtis@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) new.distance.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:30-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:38-40: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Mikhail Zhelonkin <Mikhail.Zhelonkin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikhail",
                      family = "Zhelonkin",
                      role = c("aut", "cre"),
                      email = "mikhail.zhelonkin@gmail.com"),
               person(given = c("Marc", "G."),
                      family = "Genton",
                      role = "aut"),
               person(given = "Elvezio",
                      family = "Ronchetti",
                      role = "aut"))
as necessary.
Package required but not available: ‘sampleSelection’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luis Benites <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rocio",
                      family = "Maehara",
                      role = "aut"),
               person(given = "Luis",
                      family = "Benites",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"))
as necessary.
Maintainer: ‘Edgar Santos-Fernandez <santosfe@qut.edu.au>’

The Description field contains
  <arXiv:2103.03538>. In these models, spatial dependence is captured
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
install log ‘’ does not exist
install log ‘’ does not exist
Package required but not available: ‘RDS’

Package suggested but not available for checking: ‘densEstBayes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dave Zes <zesdave@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dave",
                    family = "Zes",
                    role = c("aut", "cre"),
                    email = "zesdave@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpJyulkN/Rf2692d927b7eeca': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Kevin Matlock <kevin.matlock@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Matlock",
                      role = c("aut", "cre"),
                      email = "kevin.matlock@gmail.com"),
               person(given = "Raziur",
                      family = "Rahman",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQANIE5/ltx26a0d05b67cf29/calibration_data.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
cannot open the connection
problem found in ‘smart_weightpars.Rd’
Running massageExamples to create ‘sstvars-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpCrP570/file26fe6a1174b2e1/fitSSTVAR.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpDVpQmk/ltx2723bf50293bb9/alt_stvar.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Maintainer: ‘Luis Hernando Vanegas <hvanegasp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Hernando"),
                      family = "Vanegas",
                      role = c("aut", "cre"),
                      email = "hvanegasp@gmail.com"),
               person(given = c("Gilberto", "A."),
                      family = "Paula",
                      role = "aut"))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpccEFMK/Rf26cdbff10542f': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Packages required but not available: 'rsample', 'caret', 'Hmisc', 'recipes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Niklas Pfister <np@math.ku.dk>’

The Description field contains
  <arXiv:1911.01850>. The procedure uses averaging to estimate a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) SRanalysis.Rd:100: Lost braces
   100 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
checkRd: (-1) StabilizedRegression.Rd:109: Lost braces
   109 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
Running massageExamples to create ‘stabilo-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpznleB1/file26c9b63d04409f/sttksdx.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Running massageExamples to create ‘stabledist-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpBr1LUo/file26a0ed26658150/stableMode.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Mike Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  stacking” <arXiv:2101.07954>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gherardo Varando <gherardo.varando@gmail.com>’

The Description field contains
  Smith J. Q. (2018) <arXiv:1705.09457>.  Thwaites P. A., Smith, J. Q.
  (2017) <arXiv:1510.00186>.  Barclay L. M., Hutton J. L. and Smith J. Q.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Nutter <david.nutter@bioss.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Helen",
                      family = "Kettle",
                      role = "aut"),
               person(given = "David",
                      family = "Nutter",
                      role = "cre",
                      email = "david.nutter@bioss.ac.uk"))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpjbyBsg/Rf269f7f234918fb': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [3s/4s] OK
Maintainer: ‘LW Pembleton <lwpembleton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "LW",
                    family = "Pembleton",
                    role = c("aut", "cre"),
                    email = "lwpembleton@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) stamppFst.Rd:20: Lost braces
    20 | \code{Fsts}{a matrix of pairwise Fst values between populations}
       |            ^
checkRd: (-1) stamppFst.Rd:21: Lost braces
    21 | \code{Pvalues}{a matrix of p-values for each of the pairwise Fst values containined in the 'Fsts' matrix}
       |               ^
checkRd: (-1) stamppFst.Rd:22: Lost braces
    22 | \code{Bootstraps}{a dataframe of each Fst value generated during Bootstrapping and the associated confidence intervals}
       |                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stamp.direction.r’
Output from running autoreconf:
  autom4te: error: cannot create autom4te.cache in /tmp/RtmpY33OTT/file268dca555e9ab3: No space left on device
  aclocal: error: /usr/bin/autom4te failed with exit status: 1
  autoreconf: error: aclocal failed with exit status: 1
Maintainer: ‘Christopher D. Eager <eager.stats@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘E. P. Adams <eric.adams@orau.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "L."),
                      family = "Frome",
                      role = "aut",
                      email = "fromeEL@ornl.gov"),
               person(given = c("D.", "P."),
                      family = "Frome",
                      role = "aut"),
               person(given = c("E.", "P."),
                      family = "Adams",
                      role = "cre",
                      email = "eric.adams@orau.org"))
as necessary.
Package required but not available: ‘tidyverse’

Package suggested but not available for checking: ‘shinystan’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mapview’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GGally', 'drc', 'cdom'

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marek Hlavac <marek.hlavac@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "marek.hlavac@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) stargazer.Rd:229: Lost braces
   229 |   \item{report}{a character string containing only elements of {\code{"v"}, \code{"c"}, \code{"s"},\code{"t"}, \code{"p"}, \code{"*"}} that determines whether, and in which order, variable names (\code{"v"}), coefficients (\code{"c"}), standard errors/confidence intervals (\code{"s"}), test statistics (\code{"t"}) and p-values (\code{"p"}) should be reported in regression tables. If one of the aforementioned letters is followed by an asterisk (\code{"*"}), significance stars will be reported next to the corresponding statistic.}
       |                                                                ^
checkRd: (-1) stargazer.Rd:246: Lost braces
   246 |   \item{table.placement}{a character string containing only elements of {\code{"h"}, \code{"t"},\code{"b"}, \code{"p"}, \code{"!"}, \code{"H"}} that determines the table placement in its LaTeX floating environment.}
       |                                                                         ^
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Felix Cheysson <felix@cheysson.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Felix",
                    family = "Cheysson",
                    role = c("aut", "cre"),
                    email = "felix@cheysson.fr")
as necessary.
Maintainer: ‘Yannis Barboni <yannis.barboni1@gmail.com>’

The Description field contains
  to local spread of plant diseases." 2019. <arXiv:1811.06782>, using a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/starschemar.Rcheck/00install.out’ for details.
Maintainer: ‘Haolun Shi <shl2003@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haolun",
                      family = "Shi",
                      role = c("aut", "cre"),
                      email = "shl2003@connect.hku.hk"),
               person(given = "Guosheng",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de",
                      comment = c(ORCID = "0000-0002-8226-3132")),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-9744-3059")))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpZYq8BW/file26cdf119e71503', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZYq8BW/file26cdf119e71503/StartupUtilities.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘lessR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘starwarsdb-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: starwars_db
> ### Title: Connect to the Star Wars Database
> ### Aliases: starwars_db starwars_connect starwars_disconnect
> 
> ### ** Examples
> 
> # Manually connect using {duckdb} and {DBI}
> con <- DBI::dbConnect(
+   duckdb::duckdb(),
+   dbdir = starwars_db(),
+   read_only = TRUE
+ )
> 
> if (requireNamespace("dplyr", quietly = TRUE)) {
+   dplyr::tbl(con, "films")
+ }
Error in check_dbplyr() : 
  The package "dbplyr" is required to communicate with database backends.
Calls: <Anonymous> ... tbl.DBIConnection -> check_dbplyr -> check_installed
Execution halted
Maintainer: ‘Robin Lock <rlock@stlawu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ann",
                      family = "Cannon",
                      role = "aut"),
               person(given = "George",
                      family = "Cobb",
                      role = "aut"),
               person(given = "Bradley",
                      family = "Hartlaub",
                      role = "aut"),
               person(given = "Julie",
                      family = "Legler",
                      role = "aut"),
               person(given = "Robin",
                      family = "Lock",
                      role = c("aut", "cre"),
                      email = "rlock@stlawu.edu"),
               person(given = "Thomas",
                      family = "Moore",
                      role = "aut"),
               person(given = "Allan",
                      family = "Rossman",
                      role = "aut"),
               person(given = "Jeffrey",
                      family = "Witmer",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/statmanrobin/Stat2Data
which should likely be
  https://github.com/statmanrobin/Stat2Data/issues
instead.
checkRd: (-1) AutoPollution.Rd:16: Lost braces
    16 |     \code{Side} \tab {Side of vehicle: code{1}=right or \code{2}=left}\cr
       |                                            ^
Package required but not available: ‘haven’

Packages suggested but not available for checking: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘od_list.R’ ‘od_resource.R’ ‘od_utils.R’ ‘other_endpoints.R’
    ‘sc_data.R’ ‘schema.R’ ‘schema_uri.R’ ‘sdmx_table.R’ ‘table.R’
    ‘table_as_data_frame.R’ ‘table_json.R’ ‘table_meta.R’ ‘table_saved.R’
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dylan Beijers <dylanbeijers@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'drc', 'car', 'drcte'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘statgenSTA.Rmd’ using rmarkdown

Quitting from statgenSTA.Rmd:194-197 [layoutPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/RtmpffG8aC/file28b3be61e362e3'
---
Backtrace:
    ▆
 1. ├─base::plot(dropsTD, trials = "Gai12W")
 2. └─statgenSTA:::plot.TD(dropsTD, trials = "Gai12W")
 3.   └─statgenSTA:::layoutPlot(...)
 4.     ├─base::plot(pTr)
 5.     └─ggplot2 (local) `plot.ggplot2::ggplot`(pTr)
 6.       └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'statgenSTA.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpffG8aC/file28b3be61e362e3'
--- failed re-building ‘statgenSTA.Rmd’

SUMMARY: processing the following file failed:
  ‘statgenSTA.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘StatMatch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Pavel N. Krivitsky <pavel@statnet.org>’

Reading Rd files failed with message:
  cannot open the connection
Found the following possibly unsafe calls:
File ‘statnet.common/R/control.utilities.R’:
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp96WBKt/file272f1a41ac267b/compress_rows.data.frame.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Martina Morris <morrism@uw.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Packages required but not available: 'tergm', 'ergm.count', 'sna', 'ergm'

Packages suggested but not available for checking:
  'ergm.rank', 'ergm.ego', 'EpiModel', 'latentnet', 'networksis',
  'relevent', 'ndtv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/statnipokladna.Rcheck/00install.out’ for details.
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Maintainer: ‘Douglas G. Bonett <dgbonett@ucsc.edu>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Hossein Azari Soufiani <azari.hossein@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hossein", "Azari"),
                      family = "Soufiani",
                      role = c("aut", "cre"),
                      email = "azari.hossein@gmail.com"),
               person(given = "William",
                      family = "Chen",
                      role = "aut"))
as necessary.
Packages required but not available: 'car', 'MVN', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘afex’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'plotly', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpFWQKcn/file28102f3ac6c39f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpFWQKcn/file28102f3ac6c39f': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'hwep', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphJNo6B/file2839391a40092': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmphJNo6B/file2839391a40092': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Brett Naul <brettnaul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brett",
                    family = "Naul",
                    role = c("aut", "cre"),
                    email = "brettnaul@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Conversion of ‘README.md’ failed:
pandoc: /tmp/RtmptvVfCV/pandoc26f99710913a55.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Maintainer: ‘Marco Giuliano <mgiuliano.mail@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Giuliano",
                    role = c("aut", "cre"),
                    email = "mgiuliano.mail@gmail.com")
as necessary.
Maintainer: ‘Benjamin Risk <bbr28@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "B."),
                      family = "Risk",
                      role = "aut"),
               person(given = c("Nicholas", "A."),
                      family = "James",
                      role = "aut"),
               person(given = c("David", "S."),
                      family = "Matteson",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Risk",
                      role = "cre",
                      email = "bbr28@cornell.edu"))
as necessary.
Maintainer: ‘David Leiva <dleivaur@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Leiva", "&", "Han", "de", "Vries"),
                      family = "<J.deVries1@uu.nl>.",
                      role = "aut",
                      email = "J.deVries1@uu.nl"),
               person(given = "David",
                      family = "Leiva",
                      role = "cre",
                      email = "dleivaur@ub.edu"))
as necessary.
Maintainer: ‘Cedric E Ginestet <cedric.ginestet@kcl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Cedric", "E"),
                    family = "Ginestet",
                    role = c("aut", "cre"),
                    email = "cedric.ginestet@kcl.ac.uk")
as necessary.
Package required but not available: ‘fmesher’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lmfor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jean-Baptiste Camps <jbcamps@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jean-Baptiste", "Camps", ";", "Florian"),
                      family = "Cafiero",
                      role = "aut"),
               person(given = "Jean-Baptiste",
                      family = "Camps",
                      role = "cre",
                      email = "jbcamps@hotmail.com"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: jbcamps@hotmail.com
    From: inst/doc/A0_Stemmatology_Poster.pdf
  URI: stemmatology-utils
    From: README.md
  URI: 10.1484/M.LECTIO-EB.5.102565
    From: README.md

Found the following URLs which should use \doi (with the DOI name only):
  File ‘PCC.Exploratory.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.Stemma.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.buildGroup.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.conflicts.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.disagreement.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.elimination.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.equipollent.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.overconflicting.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.reconstructModel.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘fournival.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘heinrichi.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘notreBesoin.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘parzival.Rd’:
    https://doi.org/10.1016/j.jtbi.2003.11.022
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘stemmatology-package.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
Maintainer: ‘Sergio Garofalo <sergio.garofalo96@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Garofalo",
                    role = c("aut", "cre"),
                    email = "sergio.garofalo96@gmail.com")
as necessary.
Maintainer: ‘Arya Ebadi <aeba3842@uni.sydney.edu.au>’

The Description field contains
  (2020) <arXiv:2011.11939>. Such setups include target-decoy competition
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘steprf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Leandro A. Pereira <leandro.ap@ufu.br>’

The Description field contains
  hypothesis test. Pinto & Pereira (2021) <arXiv:2109.07978>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘swCRTdesign’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eleni Vradi <vradi.eleni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eleni",
                    family = "Vradi",
                    role = c("aut", "cre"),
                    email = "vradi.eleni@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mee Young Park <meeyoung@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mee", "Young"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "meeyoung@google.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Maintainer: ‘Wai-ki Yip <yuser86@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wai-ki",
                      family = "Yip",
                      role = c("aut", "cre"),
                      email = "yuser86@yahoo.com"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "David",
                      family = "Zahrieh",
                      role = "ctb"),
               person(given = "Chip",
                      family = "Cole",
                      role = "ctb"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "Marco",
                      family = "Bonetti",
                      role = "ctb"),
               person(given = "Victoria",
                      family = "Wang",
                      role = "ctb"),
               person(given = "William",
                      family = "Barcella",
                      role = "ctb"),
               person(given = "Sergio",
                      family = "Venturini",
                      role = "ctb"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'survAUC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'StepReg', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spm2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'haven', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kendro Vincent <vincent.kendro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yu-Chin",
                      family = "Hsu",
                      role = "aut"),
               person(given = "Kendro",
                      family = "Vincent",
                      role = c("aut", "cre"),
                      email = "vincent.kendro@gmail.com"))
as necessary.
Maintainer: ‘Aaron Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = "Annat",
                      family = "Haber",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) landmarkMatrixToList.Rd:10: Lost braces
    10 |   \item{semilandmark.pattern}{a regular expression pattern passed to \code{sub()} for identifying and grouping curve points. The default is landmark names ending in one or more numbers. To disable grouping, set to code{''}.}
       |                                                                                                                                                                                                                           ^
checkRd: (-1) docker_config_collection.Rd:11: Lost braces; missing escapes or markup?
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("config")}
       | ^
checkRd: (-1) docker_container.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_container")}
       | ^
checkRd: (-1) docker_image_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("image")}
       | ^
checkRd: (-1) docker_plugin_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("plugin")}
       | ^
checkRd: (-1) docker_service_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("service")}
       | ^
checkRd: (-1) docker_task.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_task")}
       | ^
Package required but not available: ‘labelled’

Package suggested but not available for checking: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘stim.Rd’, ‘summary.stim.Rd’, ‘symbMatrix.Rd’
Maintainer: ‘Tomas Johannesson <tj@vedur.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tomas", "Johannesson", "&", "Halldor"),
                      family = "Bjornsson",
                      role = "aut"),
               person(given = c("Icelandic", "Met.", "Office;", "Gabor"),
                      family = "Grothendieck",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Johannesson",
                      role = "cre",
                      email = "tj@vedur.is"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpnSRrGw/file27c2d628520fb6/stinemanSlopes.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
install log ‘’ does not exist
Packages required but not available: 'spatstat', 'spatstat.linnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Dan Zangri <dzangri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zangri",
                      role = c("aut", "cre"),
                      email = "dzangri@gmail.com"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "ctb"),
               person(given = "Brandon",
                      family = "Stewart",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘stmgui-package.Rd’:
    \keyword{ stm, shiny }
Maintainer: ‘Andres Villegas <andresmauriciovillegas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andres",
                      family = "Villegas",
                      role = c("aut", "cre"),
                      email = "andresmauriciovillegas@gmail.com"),
               person(given = "Pietro",
                      family = "Millossovich",
                      role = "aut",
                      email = "Pietro.Millossovich.1@city.ac.uk"),
               person(given = "Vladimir",
                      family = "Kaishev",
                      role = "aut",
                      email = "Vladimir.Kaishev.1@city.ac.uk"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: www.mortality.org
    From: man/EWMaleData.Rd
Maintainer: ‘Brandon Stewart <bms4@princeton.edu>’

Found the following (possibly) invalid file URIs:
  URI: structuraltopicmodel.com
    From: inst/doc/stmVignette.pdf
  URI: brandonstewart.org
    From: inst/doc/stmVignette.pdf
cannot open the connection
problem found in ‘plotQuote.Rd’
Maintainer: ‘Devin S. Johnson <devin.johnson@noaa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Devin", "S."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "devin.johnson@noaa.gov")
as necessary.
Maintainer: ‘Grant Humphries <grwhumphries@blackbawks.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Grant Humphries [aut, cre] (<https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (@kstreet13)’
  Authors@R: ‘Grant Humphries [aut, cre] (ORCID: <https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (GITHUB: @kstreet13)’
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.

Reading Rd files failed with message:
  cannot open the connection

The Description field contains
  2016 <arXiv:1401.7020>), adaQN (adaptive quasi-Newton) (Keskar, N.S.,
  Berahas, A.S., 2016, <arXiv:1511.01169>).  Provides functions for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Functions.R’
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘stockR.rnw’ using knitr
Warning in file(con, "wb") :
  cannot open file '/tmp/RtmpySV50H/file280e8e33f3304a': No space left on device

Quitting from stockR.rnw:87-100 [lookAtData]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from stockR.rnw:87-100 [lookAtData]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file(con, "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'stockR.rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘stockR.rnw’

SUMMARY: processing the following file failed:
  ‘stockR.rnw’

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘stocks.Rd’:
    https://doi.org/10.7287/peerj.preprints.3188v1
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Checking relative paths failed with message:
  cannot open the connection
Running massageExamples to create ‘stodom-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp4DlW6p/file28385a6de8720a/dif_ecdf_plot.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmptJw264/Rf27dc9a2a6511b5': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Running massageExamples to create ‘stopmotion-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpbQ09dw/file280f65705ac39f/preview.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Thomas Rusch <thomas.rusch@wu.ac.at>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'smacofx', 'smacof'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Allen Day <allenday@allenday.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allen",
                    family = "Day",
                    role = c("aut", "cre"),
                    email = "allenday@allenday.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Thomas Arsouze <thomas.arsouze@cirad.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/umr-amap/StormR/issues/new/choose
which should likely be
  https://github.com/umr-amap/StormR/issues/new/choose/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘defStormsList.R’
Running examples in ‘storr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: storr_environment
> ### Title: Environment object cache driver
> ### Aliases: storr_environment driver_environment
> 
> ### ** Examples
> 
> 
> # Create an environment and stick some random numbers into it:
> st <- storr_environment()
> st$set("foo", runif(10))
> st$get("foo")
 [1] 0.26550866 0.37212390 0.57285336 0.90820779 0.20168193 0.89838968
 [7] 0.94467527 0.66079779 0.62911404 0.06178627
> 
> # To make this environment persistent we can save it to disk:
> path <- tempfile()
> st2 <- st$archive_export(path)
Warning in file(con, "w") :
  cannot open file '/tmp/Rtmpw6OLlR/file280bd365a17bce/config/version': No space left on device
Error in file(con, "w") : cannot open the connection
Calls: <Anonymous> ... initialize -> write_if_missing -> writeLines -> file
Execution halted
Maintainer: ‘Deniz Akdemir <deniz.akdemir.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Deniz",
                    family = "Akdemir",
                    role = c("aut", "cre"),
                    email = "deniz.akdemir.work@gmail.com")
as necessary.
cannot open the connection
problem found in ‘mcmc_temporal_contmark.Rd’
Maintainer: ‘Edith Gabriel <edith.gabriel@inrae.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/stpp-GitHub-community
which should likely be
  https://github.com/stpp-GitHub-community/issues
instead.
Maintainer: ‘Monsuru Adepeju <monsuur2010@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monsuru",
                    family = "Adepeju",
                    role = c("cre", "aut"),
                    email = "monsuur2010@yahoo.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/Manalytics/stppSim/issues/new/choose
which should likely be
  https://github.com/Manalytics/stppSim/issues/new/choose/issues
instead.
Package required but not available: ‘sparr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Samuel Soubeyrand <samuel.soubeyrand@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Soubeyrand",
                      role = "aut"),
               person(family = "S.",
                      role = "aut"),
               person(family = "Tollenaere",
                      role = "aut"),
               person(family = "C.",
                      role = "aut"),
               person(family = "Haon-Lasportes",
                      role = "aut"),
               person(family = "E.",
                      role = "aut"),
               person(family = "Laine",
                      role = "aut"),
               person(family = "A.-L.",
                      role = "aut"),
               person(given = "Samuel",
                      family = "Soubeyrand",
                      role = "cre",
                      email = "samuel.soubeyrand@inra.fr"))
as necessary.
checkRd: (-1) powderymildew.Rd:14-16: Lost braces
    14 | \code{$demographic.coord}{
       |                          ^
checkRd: (-1) powderymildew.Rd:18-20: Lost braces
    18 | \code{$genetic.coord}{
       |                      ^
checkRd: (-1) powderymildew.Rd:22-24: Lost braces
    22 | \code{$demographic.measures}{
       |                             ^
checkRd: (-1) powderymildew.Rd:26-28: Lost braces
    26 | \code{$genetic.frequencies}{
       |                            ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/strand.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Rachael C. Aikens <rockyaikens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jose Brito <jambrito@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jose",
                      family = "Brito",
                      role = c("aut", "cre"),
                      email = "jambrito@gmail.com"),
               person(given = "Pedro",
                      family = "Silva",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Veiga",
                      role = "aut"))
as necessary.
Maintainer: ‘Miles Ott <miles_ott@alumni.brown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miles",
                    family = "Ott",
                    role = c("aut", "cre"),
                    email = "miles_ott@alumni.brown.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Michael Heath <m.heath@strath.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Heath",
                      role = c("aut", "cre"),
                      email = "m.heath@strath.ac.uk"),
               person(given = "Ian",
                      family = "Thurlbeck",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) StrathE2E2-package.Rd:70: Lost braces; missing escapes or markup?
    70 | {Basic model operations:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:79: Lost braces; missing escapes or markup?
    79 | {Parameter estimation:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:88: Lost braces; missing escapes or markup?
    88 | {Sensitivity and Monte Carlo analyses:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:98: Lost braces; missing escapes or markup?
    98 | {Compare model runs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:105: Lost braces; missing escapes or markup?
   105 | {Fishery yield analysis:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:111: Lost braces; missing escapes or markup?
   111 | {Visualize model inputs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:117: Lost braces; missing escapes or markup?
   117 | {Visualize model outputs:} \cr
       | ^
Maintainer: ‘Amr ElRafey <aelrafey@gmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Farrokh",
                      family = "Alemi",
                      role = "aut",
                      email = "falemi@gmu.edu"),
               person(given = "Amr",
                      family = "ElRafey",
                      role = c("aut", "cre"),
                      email = "aelrafey@gmu.edu"))
as necessary.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Sebastien Wouters <wouterseb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastien",
                      family = "Wouters",
                      role = c("aut", "cre"),
                      email = "wouterseb@gmail.com"),
               person(given = c("Adam", "D."),
                      family = "Smith",
                      role = "ctb"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘FossilSim_integration.Rmd’ using rmarkdown

Quitting from FossilSim_integration.Rmd:60-71 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'FossilSim'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FossilSim_integration.Rmd' failed with diagnostics:
there is no package called 'FossilSim'
--- failed re-building ‘FossilSim_integration.Rmd’

--- re-building ‘StratPal.Rmd’ using rmarkdown
--- finished re-building ‘StratPal.Rmd’

--- re-building ‘StratPal_docs.Rmd’ using rmarkdown
--- finished re-building ‘StratPal_docs.Rmd’

--- re-building ‘advanced_functionality.Rmd’ using rmarkdown
--- finished re-building ‘advanced_functionality.Rmd’

--- re-building ‘event_data.Rmd’ using rmarkdown
--- finished re-building ‘event_data.Rmd’

--- re-building ‘paleoTS_functionality.Rmd’ using rmarkdown
--- finished re-building ‘paleoTS_functionality.Rmd’

--- re-building ‘phenotypic_evolution.Rmd’ using rmarkdown
--- finished re-building ‘phenotypic_evolution.Rmd’

--- re-building ‘stratigraphic_architecture.Rmd’ using rmarkdown
--- finished re-building ‘stratigraphic_architecture.Rmd’

SUMMARY: processing the following file failed:
  ‘FossilSim_integration.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiangdong Gu <ustcgxd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangdong",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "ustcgxd@gmail.com"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Maintainer: ‘Priyanga Dilini Talagala <pritalagala@gmail.com>’

The Description field contains
  <arXiv:1908.04000> for detecting anomalies in high-dimensional data
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Verena",
                      family = "Zuber",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Packages required but not available: 'Seurat', 'SPECK'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nele Schuwirth <nele.schuwirth@eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nele",
                      family = "Schuwirth",
                      role = c("aut", "cre"),
                      email = "nele.schuwirth@eawag.ch"),
               person(given = "Peter",
                      family = "Reichert",
                      role = "aut"),
               person(given = "Mikolaj",
                      family = "Rybinski",
                      role = "aut"))
as necessary.
Package required but not available: ‘nhdplusTools’

Package suggested but not available for checking: ‘mapview’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apportion_inverse.R’ ‘apportion_polygon.R’ ‘apportion_web.R’
    ‘prep_reach_dist.R’
Maintainer: ‘Stephen A Sefick Jr. <ssefick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stephen", "A"),
                    family = "Sefick Jr.",
                    role = c("aut", "cre"),
                    email = "ssefick@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/streamMOA
which should likely be
  https://github.com/mhahsler/streamMOA/issues
instead.
Running massageExamples to create ‘stream-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpMRVPR5/file28bb9e54957bae/get_assignment.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pablo",
                    family = "Barbera",
                    role = c("aut", "cre"),
                    email = "pablo.barbera@nyu.edu")
as necessary.
Package required but not available: ‘mapview’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sebastian Henz <bastihz.dev@posteo.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecxsys.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
  File ‘multi_tox.Rd’:
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘multiple_stress.Rd’:
    https://doi.org/10.1021/acs.est.9b04293
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘stressaddition-package.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
    https://doi.org/10.1186/s12302-020-00394-7
Package required but not available: ‘drc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matt Barry <mrb@softisms.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Barry",
                    role = c("aut", "cre"),
                    email = "mrb@softisms.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Alessandro Barbiero <alessandro.barbiero@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessandro",
                      family = "Barbiero",
                      role = c("aut", "cre"),
                      email = "alessandro.barbiero@unimi.it"),
               person(given = "Riccardo",
                      family = "Inchingolo",
                      role = "aut",
                      email = "dott.inchingolo_r@libero.it"))
as necessary.
Error(s) in re-building vignettes:
  ...
sh: 1: cannot create /tmp/RtmpbvZyY3/file288ebe10904857: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpbvZyY3/file288ebe10904857': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: <Anonymous> -> cat -> readLines -> file
Execution halted
Maintainer: ‘Tom Drake <t.drake@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Drake",
                    role = c("aut", "cre"),
                    email = "t.drake@ed.ac.uk")
as necessary.
Fatal error: cannot create 'R_TempDir'

Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Alexander Hoyle <alexander@alexanderhoyle.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Hoyle",
                    role = c("aut", "cre"),
                    email = "alexander@alexanderhoyle.com")
as necessary.
Maintainer: ‘Marek Gagolewski <marek@gagolewski.com>’

Reading Rd files failed with message:
  cannot open the connection
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphJjDko/file2894c04f1c1952/stri_datetime_create.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpUgRcCJ/file28a569469cc71d': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpUgRcCJ/file28a569469cc71d': No such file or directory
Error in file(con, "r") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Bert Gunter <bgunter@comcast.net>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘strucplot.Rd’:
    \concept{
      structured plots,structured trellis plot [TRUNCATED]
Package required but not available: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom.mixed', 'car', 'phia'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
efpFunctional: multiple local function definitions for ‘plotProcess’
  with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
  different formal arguments
Comparing ‘strucchange-Ex.Rout’ to ‘strucchange-Ex.Rout.save’:
806,807d805
< Warning in plot.new() :
<   Cannot open temporary file '/tmp/RtmpeUAwyB/pdf28b316784c8e19' for compression (reason: No space left on device); compression has been turned off for this device
Maintainer: ‘Moritz Berger <Moritz.Berger@imbie.uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Moritz",
                    family = "Berger",
                    role = c("aut", "cre"),
                    email = "moritz.berger@imbie.uni-bonn.de")
as necessary.
Running massageExamples to create ‘structSSI-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpzpimBQ/file2a20ab23f2594c/chlamydiae.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Yifu Liu <2012johnnyliu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yifu",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "2012johnnyliu@gmail.com"),
               person(given = "Anru",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Oskar Hansson <oskhan@ous-hf.no>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpKPAtXU/Rf28380461d16000': No space left on device
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘skimr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'tidyverse', 'CCA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpdAj9Ig/ltx29852553e8b4fe/assert_filetype.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘ridgregextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘I. Manjula Schou <im.schou@yahoo.com.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("I.", "Manjula"),
                    family = "Schou",
                    role = c("aut", "cre"),
                    email = "im.schou@yahoo.com.au")
as necessary.
Maintainer: ‘Jerome Collet <jeromepcollet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jerome",
                    family = "Collet",
                    role = c("aut", "cre"),
                    email = "jeromepcollet@gmail.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpcXTvfL/file297818231a5b8b': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpcXTvfL/file297818231a5b8b': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Chonghui",
                      family = "Liu",
                      role = "aut"))
as necessary.
Package required but not available: ‘GSVA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Scott Barlowe <sabarlowe@email.wcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Scott",
                    family = "Barlowe",
                    role = c("aut", "cre"),
                    email = "sabarlowe@email.wcu.edu")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "Bill.Venables@gmail.com")
as necessary.
Running massageExamples to create ‘sudokuAlt-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/Rtmp8OUcyq/file28c112261c327', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/Rtmp8OUcyq/file28c112261c327/as.sudoku.R': No such file or directory
Execution halted
 NONE
Maintainer: ‘David Brahm <brahm@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Brahm",
                      role = c("aut", "cre"),
                      email = "brahm@alum.mit.edu"),
               person(given = "Greg",
                      family = "Snow",
                      role = "aut",
                      email = "Greg.Snow@intermountainmail.org"),
               person(given = c("with", "contributions", "from", "Curt"),
                      family = "Seeliger",
                      role = "aut",
                      email = "Seeliger.Curt@epamail.epa.gov"),
               person(given = "Henrik",
                      family = "Bengtsson.",
                      role = "aut",
                      email = "hb@maths.lth.se"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) suggests.Rd:14: Lost braces; missing escapes or markup?
    14 | {suggests} aims to make that workflow as minimal and painless as possible,
       | ^
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gtsummary’

Packages suggested but not available for checking:
  'broom.helpers', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Packages required but not available:
  'Hmisc', 'gtsummary', 'labelled', 'flextable', 'officer'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/summarytabl.Rcheck/00install.out’ for details.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpzJh86i/file297bc6255f60a5', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpzJh86i/file297bc6255f60a5/ctable.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Paul Hsin-ti McClelland <PaulHMcClelland@protonmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘haven’

Packages suggested but not available for checking:
  'INLA', 'rdhs', 'fmesher'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'officer'

Packages suggested but not available for checking:
  'MOFA2', 'flextable', 'rvg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Anna Vesely <anna.vesely@phd.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Vesely",
                    role = c("aut", "cre"),
                    email = "anna.vesely@phd.unipd.it")
as necessary.

The Description field contains
  may be found in Vesely, Finos, and Goeman (2020) <arXiv:2102.11759>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Running examples in ‘sumup-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: run_sumup
> ### Title: Run Sum Up
> ### Aliases: run_sumup
> 
> ### ** Examples
> 
> data(example_data)
> ex_data <- example_data
> ex_settings  <- set_default_settings()
> ex_settings  <- update_setting(ex_settings , "language", "en")
> ex_settings  <- update_setting(ex_settings , "use_sentiment_analysis", "sentimentr")
> result <- run_sumup(ex_data, ex_settings )
UDPipe model not available. Please download manually using udpipe_download_model() and set setting udpipe_model_file if you want to use that.
Sum-up continues running with an alternative tagging package.
Error in alternative_tagging(sentences) : 
  Please install tokenizers, textstem, and openNLP packages.
Calls: run_sumup -> lemmatize -> alternative_tagging
Execution halted
Package required but not available: ‘d3r’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Roel Braekers <roel.braekers@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leen",
                      family = "Prenen",
                      role = "aut"),
               person(given = "Roel",
                      family = "Braekers",
                      role = c("aut", "cre"),
                      email = "roel.braekers@uhasselt.be"),
               person(given = "Luc",
                      family = "Duchateau",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Deepansh Khurana <deepanshkhurana@outlook.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcel",
                      family = "Dettling",
                      role = "aut",
                      email = "marcel.dettling@zhaw.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Packages required but not available: 'weights', 'Hmisc'

Packages suggested but not available for checking:
  'scater', 'Seurat', 'bluster', 'velocyto.R'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Le Bao <lbaole17@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Le Bao",
                      role = c("aut", "cre"),
                      email = "lbaole17@gmail.com"),
               person(given = "Jeff",
                      family = "Gill",
                      role = "aut",
                      email = "jgill@mac.com"),
               person(given = "Tsung-han",
                      family = "Tsai",
                      role = "aut",
                      email = "thtsai@nccu.edu.tw"),
               person(given = "Jonathan",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Maintainer: ‘Minghui Wang <minghui.wang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "minghui.wang@mssm.edu"),
               person(given = "Yongzhong",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.Rd:42: Lost braces; missing escapes or markup?
    42 |  \item{color.off}{color code; specifying the color for set(s) which are "{absent}" for an intersection.}
       |                                                                          ^
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Package required but not available: ‘afex’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Packages required but not available: 'FactoMineR', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matlib’

Packages suggested but not available for checking:
  'clusterProfiler', 'AnnotationDbi', 'org.Hs.eg.db', 'org.Mm.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'logistf', 'rms', 'flexsurv', 'MBESS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Dan Chaltiel <dan.chaltiel@gustaveroussy.fr>’

Found the following (possibly) invalid URLs:
  URL: 
    From: inst/doc/surrosurv.pdf
    Message: Empty URL
Maintainer: ‘Yunro Chung <yunro.chung@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yunro",
                    family = "Chung",
                    role = c("cre", "aut"),
                    email = "yunro.chung@asu.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘surrosurvROC-package.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
  File ‘surrosurvROC.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"))
as necessary.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rsample', 'aftgee', 'bnnSurvival', 'pec', 'survdnn', 'survivalsvm',
  'randomForestSRC', 'flexsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Joao Pinto <joao.pinto@tecnico.ulisboa.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joao",
                      family = "Pinto",
                      role = c("aut", "cre"),
                      email = "joao.pinto@tecnico.ulisboa.pt"),
               person(given = "Andre",
                      family = "Verissimo",
                      role = "aut",
                      email = "andre.verissimo@tecnico.ulisboa.pt"),
               person(given = "Alexandra",
                      family = "Carvalho",
                      role = "aut",
                      email = "alexandra.carvalho@tecnico.ulisboa.pt"),
               person(given = "Susana",
                      family = "Vinga",
                      role = "aut",
                      email = "susanavinga@tecnico.ulisboa.pt"))
as necessary.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hajime",
                    family = "Uno",
                    role = c("aut", "cre"),
                    email = "huno@jimmy.harvard.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Packages required but not available: 'timeROC', 'caret', 'randomForestSRC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'timeROC', 'officer', 'rvg'

Package suggested but not available for checking: ‘jstable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rsample’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpDFd721/file2c2ffa17b0db7b': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpDFd721/file2c2ffa17b0db7b': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Guo-You Lan <jj6020770416jj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsin-wen",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "hwchang@stat.sinica.edu.tw")
as necessary.
Running examples in ‘survELtest-Ex.R’ failed
The error occurred in:

Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘pec’

Packages suggested but not available for checking:
  'censored', 'flexsurv', 'parsnip', 'randomForestSRC', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/survextrap.Rcheck/00install.out’ for details.
Package required but not available: ‘candisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
problem found in ‘as_survey.Rd’
'::' or ':::' import not declared from: ‘surveytidy’
Package required but not available: ‘flextable’

Package suggested but not available for checking: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpf88Cg0/file29791160d38182/sd_get_url_pars.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘launch_studio_demo.Rd’, ‘missing_data_report.Rd’, ‘model_json.Rd’, ‘model_report_template.Rd’, ‘outlier_report.Rd’, ‘posthoc_report.Rd’, ‘print.sframe.Rd’, ‘quality_report.Rd’, ‘read_responses.Rd’, ‘read_sframe.Rd’, ‘read_sheet_responses.Rd’, ‘reliability_report.Rd’
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpbIGso1/file297be74b961012', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpbIGso1/file297be74b961012/cfa_syntax.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available:
  'rdhs', 'SUMMER', 'labelled', 'tidyverse'

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘groupdata2’

Package suggested but not available for checking: ‘gurobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GGally', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flexsurv', 'rms'

Packages suggested but not available for checking:
  'survHEinla', 'survHEhmc', 'INLA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Tianxi",
                      family = "Cai",
                      role = "aut"))
as necessary.
Maintainer: ‘Marta Sestelo <sestelo@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Marta",
                      family = "Sestelo",
                      role = c("aut", "cre"),
                      email = "sestelo@uvigo.es"),
               person(given = "Gustavo",
                      family = "Soutinho",
                      role = "aut"))
as necessary.
Packages required but not available: 'np', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘surv_design_effect.Rd’, ‘surv_detection_probability.Rd’, ‘surv_estimate.Rd’, ‘surv_estimate_delay.Rd’, ‘surv_filter.Rd’, ‘surv_lineage_prevalence.Rd’
cannot open the connection
problem found in ‘survivalMPL-package.Rd’
Package required but not available: ‘RISCA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Packages required but not available:
  'caret', 'flexsurv', 'randomForestSRC', 'survivalPLANN'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘pseudo.Rmd’ using rmarkdown

Quitting from pseudo.Rmd:17-32 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'geepack'
---
Backtrace:
    ▆
 1. └─base::library(geepack)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pseudo.Rmd' failed with diagnostics:
there is no package called 'geepack'
--- failed re-building ‘pseudo.Rmd’

--- re-building ‘ridge.Rmd’ using rmarkdown
--- finished re-building ‘ridge.Rmd’

--- re-building ‘royston.Rmd’ using rmarkdown
--- finished re-building ‘royston.Rmd’

--- re-building ‘tutorial.Rmd’ using rmarkdown
--- finished re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘pseudo.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘pec’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'survminer', 'pec'

Packages suggested but not available for checking:
  'caret', 'ggpubr', 'randomForestSRC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marta Bofill Roig <marta.bofillroig@meduniwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marta", "Bofill"),
                      family = "Roig",
                      role = c("aut", "cre"),
                      email = "marta.bofillroig@meduniwien.ac.at"),
               person(given = c("Guadalupe", "Gomez"),
                      family = "Melis",
                      role = "ctb"),
               person(given = "Yu",
                      family = "Shen",
                      role = "ctb"))
as necessary.

The Description field contains
  found in Bofill, Shen & Gómez (2021) <arXiv:2008.12887>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpm0uFyt/ltx296af24da0e7c1/rmstw_f.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘conditional_survival.Rmd’ using rmarkdown
--- finished re-building ‘conditional_survival.Rmd’

--- re-building ‘current_status.Rmd’ using rmarkdown
--- finished re-building ‘current_status.Rmd’

--- re-building ‘variable_importance.Rmd’ using rmarkdown

Quitting from variable_importance.Rmd:217-255 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/RtmpQk3lOM/file2b177e4dad5b3e'
---
Backtrace:
    ▆
 1. ├─base::withVisible(knit_print(x, ...))
 2. ├─knitr::knit_print(x, ...)
 3. └─knitr:::knit_print.default(x, ...)
 4.   └─knitr::normal_print(x)
 5.     ├─base::print(x)
 6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
 7.       └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'variable_importance.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpQk3lOM/file2b177e4dad5b3e'
--- failed re-building ‘variable_importance.Rmd’

SUMMARY: processing the following file failed:
  ‘variable_importance.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘netmeta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xuefei Jia <xuefeij.ai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuefei",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "xuefeij.ai@gmail.com")
as necessary.
install log ‘’ does not exist
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprciwTv/ltx29c4562283c672/HazGL.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = "aut"),
               person(given = "Angel",
                      family = "Cronin",
                      role = "aut"),
               person(given = "Chakib",
                      family = "Battioui",
                      role = "aut"),
               person(given = "James",
                      family = "Bell",
                      role = "aut"))
as necessary.
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(survSAKK)
  > 
  > test_check("survSAKK")
  Saving _problems/test-surv.plot-150.R
  Saving _problems/test-surv.plot-473.R
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 97 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-surv.plot.R:148:3'): surv.plot throws error for invalid risktable parameter ──
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─testthat::expect_silent(...) at test-surv.plot.R:148:3
   2.   └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   3.     └─testthat (local) .capture(...)
   4.       └─withr::with_output_sink(...)
   5.         └─withr:::set_output_sink(file = new, append = append, split = split)
   6.           └─withr:::output_sink(file = file, append = append, split = split)
   7.             └─base::sink(file = file, append = append, type = "output", split = split)
   8.               └─base::file(file, if (append) "a" else "w")
  ── Failure ('test-surv.plot.R:471:3'): Check several time points and position. ──
  Expected `surv.plot(...)` to run silently.
  Actual noise: warnings.
  
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 97 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Rong Huang <roh019@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rong",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "roh019@ucsd.edu"),
               person(given = "Ronghui",
                      family = "Xu",
                      role = "aut",
                      comment = "Lily"))
as necessary.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Sibley <dcibioinformatics@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kouros",
                      family = "Owzar",
                      role = "aut"),
               person(given = "Zhiguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Nancy",
                      family = "Cox",
                      role = "aut"),
               person(given = "Sin-Ho",
                      family = "Jung",
                      role = "aut"),
               person(given = "Chanhee",
                      family = "Yi",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Sibley",
                      role = "cre",
                      email = "dcibioinformatics@duke.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhuowei Sun <sunzw21@mails.jlu.edu.cn>’

The Description field contains
  <arXiv:2310.15877> and Sun, D. et al. (2023) <arXiv:2308.15549>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
install log ‘’ does not exist
Maintainer: ‘Lior Rennert <liorr@clemson.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lior",
                      family = "Rennert",
                      role = c("aut", "cre"),
                      email = "liorr@clemson.edu"),
               person(given = "Yidan",
                      family = "Shi",
                      role = "aut",
                      email = "yidan.shi@pennmedicine.upenn.edu"))
as necessary.
checkRd: (-1) coxDT.Rd:76: Lost braces; missing escapes or markup?
    76 | The estimation procedure here is performed using coxph {survival} and inserting these estimated
       |                                                        ^
Error(s) in re-building vignettes:
  ...
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘suso_gql_helpers.R’ ‘suso_gql_uploadMap.R’
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmppVR2Ay/file297afc325d1fd0/susoop_str.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp191NBN/ltx2983683092cc00/suso_gql_interviews.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SveltePlots.Rcheck/00install.out’ for details.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpINxk2G/Rd2pdf296124579d8683/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Aaron M Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aaron", "M"),
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = c("Alejandro", "J"),
                      family = "Romero",
                      role = "aut"))
as necessary.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘createSyntaxFile.Rd’:
    \concept{ Syntax highlighting, code coloring }
  File ‘guiDDEInstall.Rd’:
    \concept{ Interprocess DDE communication, call tip [TRUNCATED]
  File ‘svIDE-package.Rd’:
    \concept{ GUI API IDE and code editor, language sy [TRUNCATED]
Maintainer: ‘Thomas Nagler <mail@tnagler.com>’

Reading Rd files failed with message:
  cannot open the connection
Running examples in ‘svines-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: svine
> ### Title: Stationary vine distribution models
> ### Aliases: svine
> 
> ### ** Examples
> 
> # load data set
> data(returns)  
> 
> # fit parametric S-vine model with Markov order 1
> fit <- svine(returns[1:100, 1:3], p = 1, family_set = "parametric")
Loading required namespace: intervals
> fit 
3-dimensional S-vine distribution model of order p = 1 ('svine_dist')
> summary(fit)
$margins
# A data.frame: 3 x 5 
 margin     name    model       parameters loglik
      1  Allianz Logistic   0.0015, 0.0073    292
      2      AXA Logistic   0.0029, 0.0084    277
      3 Generali Logistic 0.00088, 0.00770    286

$copula
# A data.frame: 12 x 10 
 tree edge conditioned conditioning var_types   family rotation parameters df
    1    1        6, 3                    c,c gaussian        0       -0.2  1
    1    2        1, 2                    c,c        t        0 0.72, 3.66  2
    1    3        2, 3                    c,c    frank        0        7.4  1
    2    1        5, 3            6       c,c    indep        0             0
    2    2        6, 2            3       c,c    indep        0             0
    2    3        1, 3            2       c,c    indep        0             0
    3    1        4, 3         6, 5       c,c    indep        0             0
    3    2        5, 2         3, 6       c,c      joe        0        1.1  1
    3    3        6, 1         2, 3       c,c    indep        0             0
    4    1        4, 2      3, 6, 5       c,c    indep        0             0
    tau
 -0.128
  0.516
  0.580
  0.000
  0.000
  0.000
  0.000
  0.055
  0.000
  0.000
# ... with 2 more rows

> plot(fit$copula)
Error in plot.vinecop(fit$copula) : 
  The 'ggraph' package must be installed to plot.
Calls: plot -> plot.vinecop
Execution halted
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpjXmQit/Rf297f0edbdde4f': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
checkRd: (-1) koInstall.Rd:24: Lost braces; missing escapes or markup?
    24 | set, svKomodo loads {svSocket}, starts the socket server listening to the
       |                     ^
checkRd: (-1) svKomodo-package.Rd:18: Lost braces; missing escapes or markup?
    18 | Komodo and (2) the present {svKomodo} R package that work hand in hand to
       |                            ^
checkRd: (-1) svKomodo-package.Rd:28: Lost braces; missing escapes or markup?
    28 | Nevertheless, the SciViews-K Komodo addin and the {svKomodo} R package
       |                                                   ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                          ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                                         ^
checkRd: (-1) svKomodo-package.Rd:37: Lost braces; missing escapes or markup?
    37 | Both SciViews-K and {svKomodo} should be considered archived items. I keep
       |                     ^
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Trevor",
                    family = "Hastie",
                    role = c("aut", "cre"),
                    email = "hastie@stanford.edu")
as necessary.
File 'data/datalist' is out-of-date:
  Fatal error: cannot create 'R_TempDir'
Please re-create using tools::add_datalist(force = TRUE).
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Challet",
                    role = c("aut", "cre"),
                    email = "damien.challet@gmail.com")
as necessary.
Maintainer: ‘Uditha Amarananda Wijesuriya <u.wijesuriya@usi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Uditha", "Amarananda"),
                    family = "Wijesuriya",
                    role = c("aut", "cre"),
                    email = "u.wijesuriya@usi.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘bibRNews.Rd’:
    \concept{ BibTeX bibliography, R News }
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpXvt0B8/file299384250423e6/searchEngines.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpIAXqYw/Rf2989533c53f95c': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

Reading Rd files failed with message:
  cannot open the connection

The Description field contains
  likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mithat Gonen <gonenm@mskcc.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'Hmisc', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Package required but not available: ‘broom.mixed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xingye Qiao <qiao@math.binghamton.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘swa.Rd’:
    \keyword{classification,}
    \keyword{selection,}
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpbwmZEU/file29bbd458ad2ab2/events_summary.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘swcEcon-intro.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp1QVfKs/Rf29dc5f56b5d3d5': No space left on device

Quitting from swcEcon-intro.Rmd:276-280 [costs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from swcEcon-intro.Rmd:276-280 [costs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'swcEcon-intro.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘swcEcon-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘swcEcon-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Maintainer: ‘Chung-hong Chan <chainsawtiney@gmail.com>’

The Description field contains
  (Mazini et al., 2019) <arXiv:1904.04047>, SemAxis (An et al., 2018)
  <arXiv:1806.05521>, Relative Negative Sentiment Bias (Sweeney &
  Test (Dev & Phillips, 2019) <arXiv:1901.07656>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘timetk’

Package suggested but not available for checking: ‘tidyquant’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mans Magnusson <mons.magnusson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mans",
                      family = "Magnusson",
                      role = c("aut", "cre"),
                      email = "mons.magnusson@gmail.com"),
               person(given = "Erik",
                      family = "Bulow",
                      role = "aut"))
as necessary.
Maintainer: ‘Juan Xiong <jxiong@szu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juan",
                      family = "Xiong",
                      role = c("aut", "cre"),
                      email = "jxiong@szu.edu.cn"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SwimmeR.Rcheck/00install.out’ for details.
Maintainer: ‘Jessica Weiss <jessica.weiss@uhnresearch.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jessica",
                      family = "Weiss",
                      role = c("aut", "cre"),
                      email = "jessica.weiss@uhnresearch.ca"),
               person(given = "Wei",
                      family = "Xu",
                      role = "aut",
                      email = "Wei.Xu@uhnresearch.ca"))
as necessary.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpMG2FzR/file2a212976eef4d7', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpMG2FzR/file2a212976eef4d7/clean_text.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpcyJekJ/ltx2aa8f8450f8a98/getPkgDir.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
Packages required but not available: 'ggpubr', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Output from running autoreconf:
  autom4te: error: cannot open /tmp/arTNN0Zb/am4tjGX3Uv/traces.m4: No space left on device
  autoreconf: error: /usr/bin/autoconf failed with exit status: 1
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Josef Fruehwald <jofrhwld@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Fruehwald",
                    role = c("aut", "cre"),
                    email = "jofrhwld@gmail.com")
as necessary.
Problems with news in ‘inst/NEWS.Rd’:
  cannot open the connection
Maintainer: ‘Vinicius Quintas Souto Maior <vinicius@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vinicius", "Quintas", "Souto"),
                      family = "Maior",
                      role = c("aut", "cre", "cph"),
                      email = "vinicius@de.ufpe.br"),
               person(given = c("Francisco", "Jose", "A"),
                      family = "Cysneiros",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘elliptical.ts.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘influence.Rd’:
    https://doi.org/10.1080/03610929308831105
    https://doi.org/10.2307/3109764
    https://doi.org/10.1198/073500104000000217
  File ‘predict.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘sym.arma-package.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
Package required but not available: ‘RSDA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Grueneberg <cran@agrueneberg.info>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blagoje Ivanović <blagoje.ivanovic@matf.bg.ac.rs>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Blagoje",
                    family = "Ivanović",
                    role = c("aut", "cre"),
                    email = "blagoje.ivanovic@matf.bg.ac.rs")
as necessary.
cannot open the connection
problem found in ‘evaluate.Rd’
Maintainer: ‘Marvin Kopka <marvin.kopka@tu-berlin.de>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caracas’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Grabchak <mgrabcha@uncc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Grabchak",
                      role = c("aut", "cre"),
                      email = "mgrabcha@uncc.edu"),
               person(given = "Lijuan",
                      family = "Cao",
                      role = "aut",
                      email = "lcao2@uncc.edu"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpWwGe3x/file2a211d396355ae/full_asym_sync_to_right.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Tarik C. Gouhier <tarik.gouhier@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tarik", "C."),
                    family = "Gouhier",
                    role = c("aut", "cre"),
                    email = "tarik.gouhier@gmail.com")
as necessary.
checkRd: (-1) coord2dist.Rd:14: Lost braces; missing escapes or markup?
    14 | \code{n} x 4 matrix of coordinates consisting of {lat or y, lon or x} pairs for each each site
       |                                                  ^
Maintainer: ‘Donghoh Kim <donghoh.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matlab", "original", "by", "Eugene", "Brevdo;", "R", "port", "by", "Dongik"),
                      family = "Jang",
                      role = "aut"),
               person(given = "Hee-Seok",
                      family = "Oh",
                      role = "aut"),
               person(given = "Donghoh",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "donghoh.kim@gmail.com"))
as necessary.
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gertjan",
                    family = "van den Burg",
                    role = c("aut", "cre"),
                    email = "gertjanvandenburg@gmail.com")
as necessary.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  populations <arXiv:2106.06835>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'mice', 'StackImpute'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alix Lahuec <alix.lahuec@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alix",
                    family = "Lahuec",
                    role = c("aut", "cre"),
                    email = "alix.lahuec@mail.mcgill.ca")
as necessary.
Maintainer: ‘Cuiwei Gao <48gaocuiwei@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpjLjzh2/Rf29dee72ce7445': No space left on device
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/synthpop.Rcheck/00install.out’ for details.
Packages required but not available: 'ggpubr', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Merlin Kopfmann <mghncd+cran@posteo.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Merlin",
                    family = "Kopfmann",
                    role = c("aut", "cre"),
                    email = "mghncd+cran@posteo.jp")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "fonts.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = c("Jeff", "D."),
                      family = "Hamann",
                      role = "aut"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘T2EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1177/009286159603000427
  File ‘T2EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘T2EQ.dissolution.profiles.hoffelder.Rd’:
    http://dx.doi.org/10.1177/009286159603000427
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Package required but not available: ‘highcharter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Philip C Schouten <philip.schouten@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "C"),
                    family = "Schouten",
                    role = c("aut", "cre"),
                    email = "philip.schouten@gmail.com")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tableone’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘labelled’

Package suggested but not available for checking: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘tablesgg.Rmd’ using rmarkdown

Quitting from tablesgg.Rmd:518-555 [unnamed-chunk-39]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `pdf()`:
! cannot open file '/tmp/Rtmpk7Ihk5/file2b98945dcc3de.pdf'
---
Backtrace:
    x
 1. \-tablesgg::`propsd<-`(...)
 2.   \-tablesgg:::props_mod(x, value = value, e = e, setEnabled = setEnabled)
 3.     \-tablesgg:::`entries<-`(`*tmp*`, value = xInfo)
 4.       +-base::plot(...)
 5.       \-tablesgg:::plot.prTable(...)
 6.         \-tablesgg:::calc_rcsize(...)
 7.           \-tablesgg:::entrySize_mm(entryInfo, allowWrap = FALSE)
 8.             \-grDevices::pdf(grfile)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tablesgg.Rmd' failed with diagnostics:
cannot open file '/tmp/Rtmpk7Ihk5/file2b98945dcc3de.pdf'
--- failed re-building ‘tablesgg.Rmd’

SUMMARY: processing the following file failed:
  ‘tablesgg.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpv3828z/ltx2bc82a68ca6f80/plot.pltdTable.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Running massageExamples to create ‘tablespan-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmppxQIxP/file2aa60531acb192/style_header_cells.R': No space left on device
Execution halted
 NONE
install log ‘’ does not exist
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(tablexlsx)
  > 
  > test_check("tablexlsx")
  v Your Excel file 'Export.xlsx' is available in the folder '/tmp/Rtmp1bChjl'
  Saving _problems/test-toxlsx-5.R
  v Your Excel file 'Export.xlsx' is available in the folder '/tmp/Rtmp1bChjl'
  v Your Excel file 'Export.xlsx' is available in the folder '/tmp/Rtmp1bChjl'
  v Your Excel file 'Export.xlsx' is available in the folder '/tmp/Rtmp1bChjl'
  v Your Excel file 'Results.xlsx' is available in the folder '/tmp/Rtmp1bChjl'
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 66 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-toxlsx.R:3:3'): toxlsx works correctly with a simple data frame ──
  Error in `file(con, "r")`: invalid 'description' argument
  Backtrace:
      ▆
   1. ├─openxlsx::read.xlsx(...) at test-toxlsx.R:3:3
   2. └─openxlsx:::read.xlsx.default(...)
   3.   ├─base::unlist(readUTF8(workbook))
   4.   └─openxlsx:::readUTF8(workbook)
   5.     └─base::readLines(x, warn = FALSE, encoding = "UTF-8")
   6.       └─base::file(con, "r")
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 66 ]
  Error:
  ! Test failures.
  Execution halted
Packages required but not available: 'parsnip', 'tune'

Packages suggested but not available for checking:
  'recipes', 'rsample', 'tidymodels', 'tidyverse', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.
checkRd: (-1) tabmulti.Rd:68: Lost braces
    68 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
checkRd: (-1) tabmulti.svy.Rd:67: Lost braces
    67 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tabshiftr.Rcheck/00install.out’ for details.
Package required but not available: ‘mapedit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘tabstats.Rmd’ using rmarkdown

Quitting from tabstats.Rmd:131-165 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1m[34m<error/rlang_error>[39m[22m
[1m[33mError[39m in [1m[94m`loadNamespace()`[39m[1m:[22m
[33m![39m there is no package called 'rstatix'
---
[1mBacktrace:[22m
[90m    [39mx
[90m 1. [39m+-[1mdplyr[22m::mutate(...)
[90m 2. [39m\-[1mbase[22m::loadNamespace(x)
[90m 3. [39m  \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
[90m 4. [39m    \-base (local) withOneRestart(expr, restarts[[1L]])
[90m 5. [39m      \-base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tabstats.Rmd' failed with diagnostics:
there is no package called 'rstatix'
--- failed re-building ‘tabstats.Rmd’

SUMMARY: processing the following file failed:
  ‘tabstats.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘cell-index-raster-abstraction.Rmd’ using rmarkdown
--- finished re-building ‘cell-index-raster-abstraction.Rmd’

--- re-building ‘tabularaster-usage.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp2VgQJp/Rf2cd85d15f4da1f': No space left on device

Quitting from tabularaster-usage.Rmd:191-202 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from tabularaster-usage.Rmd:191-202 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tabularaster-usage.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘tabularaster-usage.Rmd’

SUMMARY: processing the following file failed:
  ‘tabularaster-usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphrWtRy/file2aa5c05ff28fac/she.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp8R8ZSh/file2ad508171d72e2': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp8R8ZSh/file2ad508171d72e2': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Austin Nar <austin.nar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Austin",
                    family = "Nar",
                    role = c("aut", "cre"),
                    email = "austin.nar@gmail.com")
as necessary.
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |   ^
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |                      ^
Package required but not available: ‘DescTools’

Packages suggested but not available for checking: 'ggpubr', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric Brown <eb@ericebrown.com>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/tacmagic
which should likely be
  https://github.com/ropensci/tacmagic/issues
instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpKxF01q/file2a9aba1703ed40/prepanel.ci.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running ‘testthat.R’ [17s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > 
  > testthat::test_check("TAD")
  Loading required package: TAD
  Starting 2 test processes.
  Saving _problems/test-graph_skr-10.R
  Saving _problems/test-moments_graph-12.R
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 101 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-graph_skr.R:3:3'): SKR Graphs ────────────────────────────────
  Expected `skr_graph(...)` not to throw any errors.
  Actually got a <packageNotFoundError> with message:
    there is no package called 'ggpubr'
  ── Failure ('test-moments_graph.R:4:3'): Moments Graphs ────────────────────────
  Expected `invisible(...)` not to throw any errors.
  Actually got a <simpleError> with message:
    Please install ggpubr to run graphs generation function.
    To make all the package's functionnalities available,you can run:
    devtools::install_dev_deps('tad')
    in R console, or directly from a terminal:
    R -q -e "devtools::install_dev_deps('tad')"
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 101 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘best-strategy.Rmd’ using rmarkdown
--- finished re-building ‘best-strategy.Rmd’

--- re-building ‘general-use-of-tad.Rmd’ using rmarkdown
--- finished re-building ‘general-use-of-tad.Rmd’

--- re-building ‘graph-outputs.Rmd’ using rmarkdown

Quitting from graph-outputs.Rmd:67-79 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `load_package()`:
! Please install ggpubr to run graphs generation function.
To make all the package's functionnalities available,you can run:
devtools::install_dev_deps('tad')
in R console, or directly from a terminal:
R -q -e "devtools::install_dev_deps('tad')"
---
Backtrace:
    ▆
 1. └─TAD::moments_graph(...)
 2.   └─TAD:::load_package("ggpubr")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'graph-outputs.Rmd' failed with diagnostics:
Please install ggpubr to run graphs generation function.
To make all the package's functionnalities available,you can run:
devtools::install_dev_deps('tad')
in R console, or directly from a terminal:
R -q -e "devtools::install_dev_deps('tad')"
--- failed re-building ‘graph-outputs.Rmd’

--- re-building ‘output-different-formats.Rmd’ using rmarkdown
--- finished re-building ‘output-different-formats.Rmd’

SUMMARY: processing the following file failed:
  ‘graph-outputs.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Anna Kiriliouk <anna.kiriliouk@unamur.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Kiriliouk",
                    role = c("aut", "cre"),
                    email = "anna.kiriliouk@unamur.be")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Serkan Korkmaz <serkor1@duck.com>’

Reading Rd files failed with message:
  cannot open the connection
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpqfeCGk/file2b29a827a2d6f3/extended_moving_average_convergence_divergence.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running examples in ‘talib-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: abandoned_baby
> ### Title: Abandoned Baby
> ### Aliases: abandoned_baby CDLABANDONEDBABY
> 
> ### ** Examples
> 
> ## load Bitcoin (BTC)
> ## series
> data(BTC, package = "talib")
> 
> ## calculate the indicator
> ## for Bitcoin (BTC)
> output <- talib::abandoned_baby(BTC)
> 
> ## display the results
> utils::tail(output)
                    CDLABANDONEDBABY
2024-12-26 01:00:00                0
2024-12-27 01:00:00                0
2024-12-28 01:00:00                0
2024-12-29 01:00:00                0
2024-12-30 01:00:00                0
2024-12-31 01:00:00                0
> 
> ## visualize the indicator
> ## with talib::chart()
> ##
> ## see ?talib::chart or ?talib::indicator
> ## for more details
> {
+  ## chart OHLC-V
+  ## series with talib::chart()
+  talib::chart(BTC)
+ 
+  ## chart indicator
+  ## with default values
+  talib::indicator(
+      talib::abandoned_baby
+  )
+ }
Error: Package 'plotly' is required for the plotly backend. Install it with install.packages('plotly'), or set options(talib.chart.backend = 'ggplot2') to use the ggplot2 backend instead.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ............Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpkXcF92/ltx2c4ca01bae1bbe/two_crows.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_lines.R’ ‘init.R’ ‘plots.R’ ‘report.R’ ‘tokenize.R’
Packages required but not available: 'ggraph', 'plotly', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nanne Aben <nanne.aben@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nanne",
                    family = "Aben",
                    role = c("aut", "cre"),
                    email = "nanne.aben@gmail.com")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘tangram-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpsNYW5x/file2ae41f704711f2/custom_css.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Alexey Shipunov <dactylorhiza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Shipunov",
                    role = c("aut", "cre"),
                    email = "dactylorhiza@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘auth0.R’ ‘config.R’ ‘entra_id.R’ ‘google.R’ ‘utils.R’
Package required but not available: ‘bipartite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fabrizio Cipollini <cipollini.fabrizio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francesco",
                      family = "Calvori",
                      role = "aut"),
               person(given = "Fabrizio",
                      family = "Cipollini",
                      role = c("aut", "cre"),
                      email = "cipollini.fabrizio@gmail.com"),
               person(given = c("Giampiero", "M."),
                      family = "Gallo",
                      role = "aut"),
               person(given = "'gzstream'",
                      family = "authors.",
                      role = "aut"))
as necessary.
checkRd: (-1) TAQ-functions.Rd:119: Lost braces
   119 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
checkRd: (-1) TAQ-package.Rd:59: Lost braces
    59 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘tardis.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpmMr8Jp/Rf2ada635af2195e': No space left on device

Quitting from tardis.Rmd:17-20 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from tardis.Rmd:17-20 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tardis.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘tardis.Rmd’

SUMMARY: processing the following file failed:
  ‘tardis.Rmd’

Error: Vignette re-building failed.
Execution halted
Running massageExamples to create ‘targets-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpaxcmPL/file2b74eb59fbfb18/tar_make_future.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Zehang Li <lizehang@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zehang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizehang@uw.edu"),
               person(given = "Tyler",
                      family = "McCormick",
                      role = "aut"),
               person(given = "Sam",
                      family = "Clark",
                      role = "aut"))
as necessary.
Maintainer: ‘Hanwen Zhang <hanwengutierrez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanwen",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hanwengutierrez@gmail.com"),
               person(given = c("Fabio", "H."),
                      family = "Nieto",
                      role = "aut"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp3iWyjE/Rf2a9cf21fa9ee14': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Yuan-De Tan <tanyuande@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuan-De",
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "tanyuande@gmail.com")
as necessary.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Lukas Burk <lukas@quantenbrot.de>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/cboettig/taxalight
which should likely be
  https://github.com/cboettig/taxalight/issues
instead.
Maintainer: ‘Jacques Allard <jacques.allard@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacques",
                      family = "Allard",
                      role = c("aut", "cre"),
                      email = "jacques.allard@gmail.com"),
               person(given = "Vartan",
                      family = "Choulakian",
                      role = "aut"))
as necessary.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zachary Foster <zacharyfoster1989@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘taxlist’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6BLjbi/file2ae48b49302966/condenseTaxa.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9n2Fe6/ltx2b66275a73b44f/prepareDatabase.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘spotifyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TaylorRussell.Rd’
Maintainer: ‘Zhixuan Shao <shaozhixuansh@pku.edu.cn>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sace.Rd’:
    https://doi.org/10.1093/biomet/asx034
  File ‘simulated_data.Rd’:
    https://doi.org/10.1093/biomet/asx034
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"),
               person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘tbm-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmplqTgBz/file2b612b268a3b2', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmplqTgBz/file2b612b268a3b2/ctmboost.R': No such file or directory
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tbrf.Rcheck/00install.out’ for details.
Maintainer: ‘Elior Rahmani <elior.rahmani@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) tca.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{C1.map}{An \code{p1} by \code{k} matrix of 0/1 values, indicating for each of the \code{p1} covariates in \code{C1} whether to consider its potential effects on the values of each of the \code{k} sources (e.g., if position \code{i,j} in \code{C1.map} is 1 then the potential effect of the \code{i}-th covariate in \code{C1} on the {j}-th source will be considered). If \code{C1.map == NULL} then effects for all covariates in \code{C1} will be considered in each of the sources. Note that \code{C1.map} is available only if \code{constrain_mu == TRUE}.}
       |                                                                                                                                                                                                                                                                                                                                                  ^
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Huaiyu Zhang <huaiyuzhang1988@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huaiyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "huaiyuzhang1988@gmail.com"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggpubr', 'plotly', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Boris P Hejblum <boris.hejblum@u-bordeaux.fr>’

Found the following (possibly) invalid URLs:
  URL: https://docs.gsea-msigdb.org/#GSEA/Data_Formats/#gmt-gene-matrix-transposed-file-format-gmt/
    From: inst/doc/TcGSA_userguide.html
    Message: Invalid URL: '#' not allowed in fragment
Packages required but not available: 'plotly', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘ttclust.R’ [18s/7s]
Running R code in ‘ttclust.R’ had CPU time 2.6 times elapsed time
  Comparing ‘ttclust.Rout’ to ‘ttclust.Rout.save’ ... OK
Error(s) in re-building vignettes:
  ...
--- re-building ‘tcplfit2-vignette.Rmd’ using rmarkdown

Quitting from tcplfit2-vignette.Rmd:43-56 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tcpl'
---
Backtrace:
    ▆
 1. └─base::library(tcpl)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tcplfit2-vignette.Rmd' failed with diagnostics:
there is no package called 'tcpl'
--- failed re-building ‘tcplfit2-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘tcplfit2-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘T4cluster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘recipes’

Package suggested but not available for checking: ‘tidymodels’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp00i65n/file2b29ac9ad6965': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp00i65n/file2b29ac9ad6965': No such file or directory
Error in file(con, "r") : cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mobius-strips.Rd’
Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Julien",
                      family = "Lavenus",
                      role = "aut"),
               person(given = "Mikael",
                      family = "Lucas",
                      role = "cre",
                      email = "mikael.lucas@ird.fr"))
as necessary.
Package required but not available: ‘furniture’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Ecume’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maxime Durand <duran1211@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maxime",
                    family = "Durand",
                    role = c("aut", "cre"),
                    email = "duran1211@gmail.com")
as necessary.
Package required but not available: ‘survidm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Kenneth",
                      family = "Rose",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘tdROC-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpxsgYde/file2b62ea796c9a71/Melano.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Jing Hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Clayton",
                      role = "aut"),
               person(given = c("Jing", "Hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Maintainer: ‘Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hugo", "Andres", "Gutierrez"),
                    family = "Rojas",
                    role = c("aut", "cre"),
                    email = "hagutierrezro@gmail.com")
as necessary.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
cannot open the connection
problem found in ‘log_shiny_input_changes.Rd’
Packages required but not available:
  'teal', 'teal.transform', 'tern', 'teal.reporter', 'teal.widgets',
  'tern.gee', 'tern.mmrm', 'vistime'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'teal', 'teal.transform', 'teal.reporter', 'teal.widgets', 'tern'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘teal’

Package suggested but not available for checking: ‘teal.transform’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'teal.slice', 'teal.reporter', 'teal.widgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flextable', 'gtsummary', 'rtables.officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'teal.widgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘teal.widgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/teamcolors.Rcheck/00install.out’ for details.
Maintainer: ‘Johannes Ossberger <johannes.ossberger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Ossberger",
                    role = c("aut", "cre"),
                    email = "johannes.ossberger@gmail.com")
as necessary.
Running massageExamples to create ‘tectonicr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpB9Tlrx/file2ced805176279/compact-grid.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘randomForestSRC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jeffrey L. Andrews <jeff.andrews@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "L."),
                      family = "Andrews",
                      role = c("aut", "cre"),
                      email = "jeff.andrews@ubc.ca"),
               person(given = c("Jaymeson", "R."),
                      family = "Wickins",
                      role = "aut"),
               person(given = c("Nicholas", "M."),
                      family = "Boers",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Checking relative paths failed with message:
  cannot open the connection
Running massageExamples to create ‘telegram.bot-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpA3vmfz/file2b662e71fc8b80/sendPhoto.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘arulesViz’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/telraamStats.Rcheck/00install.out’ for details.
Maintainer: ‘Etienne Low-Decarie <etienne.decarie@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: to_be_added
    From: man/Emiliania_huxleyi.Rd
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/temperatureresponse.Rcheck/00install.out’ for details.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYSXsl6/ltx2bc64530689392/estimate_template_from_DR.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘WGCNA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Siddhartha Kundu <siddhartha_kundu@aiims.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siddhartha",
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "siddhartha_kundu@aiims.edu")
as necessary.
Maintainer: ‘Till Massing <till.massing@uni-due.de>’

The Description field contains
  (Massing (2023) <arXiv:2303.07060>).  The following references form the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pixu Shi <pixu.shi@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pixu",
                    family = "Shi",
                    role = c("aut", "cre"),
                    email = "pixu.shi@duke.edu")
as necessary.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tenm.Rcheck/00install.out’ for details.
Maintainer: ‘K. Gerald van den Boogaart <boogaart@math.tu-freiberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("K.", "Gerald"),
                    family = "van den Boogaart",
                    role = c("aut", "cre"),
                    email = "boogaart@uni-greifswald.de")
as necessary.
Maintainer: ‘Suleiman A Khan <khan.suleiman@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'tsBSS', 'ICtest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Weilin Chen <w.chen56@lse.ac.uk>’

The Description field contains
  projected data.  See Chen and Lam (2023) <arXiv:2208.04012> for more
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yuchen Zeng <yzeng58@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miaoyan",
                      family = "Wang",
                      role = "aut"),
               person(given = "Yuchen",
                      family = "Zeng",
                      role = c("aut", "cre"),
                      email = "yzeng58@wisc.edu"))
as necessary.
cannot open the connection
cannot open the connection
problems found in ‘tsum.Rd’, ‘zscores.Rd’
Packages required but not available: 'rtracklayer', 'valr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘M. Suzette Blanchard <sblanchard@coh.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "Suzette"),
                    family = "Blanchard",
                    role = c("aut", "cre"),
                    email = "sblanchard@coh.org")
as necessary.
Packages required but not available: 'ergm', 'tergm'

Package suggested but not available for checking: ‘EpiModel’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'ergm.multi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYSm7xz/file2b79c12607de68/is_terminal.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'tern', 'geeasy', 'geepack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tern’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'officer', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp3hJF1c/ltx2ef9e673c2028e/SpatRaster-class.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘TesiproV-Vignette.Rmd’ using rmarkdown

Quitting from TesiproV-Vignette.Rmd:449-480 [unnamed-chunk-22]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package "brms" is required but not installed.
---
Backtrace:
    ▆
 1. └─ps_param$runMachines()
 2.   └─base::lapply(sys_input[[i]]$vars, function(v) v$getlDistr())
 3.     └─TesiproV (local) FUN(X[[i]], ...)
 4.       └─v$getlDistr()
 5.         └─TesiproV:::ensure_pkg(Package)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TesiproV-Vignette.Rmd' failed with diagnostics:
Package "brms" is required but not installed.

--- failed re-building ‘TesiproV-Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘TesiproV-Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Packages required but not available:
  'EstCRM', 'officedown', 'bruceR', 'officer', 'flextable', 'difR',
  'lordif', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael C Sachs <sachsmc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "C"),
                      family = "Sachs",
                      role = c("aut", "cre"),
                      email = "sachsmc@gmail.com"),
               person(given = c("Michael", "P"),
                      family = "Fay",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/test.assessr.Rcheck/00install.out’ for details.
Maintainer: ‘Gannaz Irene <irene.gannaz@insa-lyon.fr>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘TestCor-package.Rd’:
    https://doi.org/10.1111/j.2517-6161.1995.tb02031.x
    https://doi.org/10.1080/01621459.2014.999157
    https://doi.org/10.1214/088342307000000113
    https://doi.org/10.1198/016214504000000539
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘conditional-expectations.Rd’, ‘date-expectations.Rd’, ‘exclusivity-expectations.Rd’, ‘expect-defunct.Rd’
Running massageExamples to create ‘testdat-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpM1PQ6X/file2bb57d520a9cb7/exclusivity-expectations.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Dexter Cahoy <dexter.cahoy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dexter",
                    family = "Cahoy",
                    role = c("aut", "cre"),
                    email = "dexter.cahoy@gmail.com")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpLubvUg/file2b8ddf6097503a/is_single_negative_integer.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
cannot open the connection
cannot open the connection
problems found in ‘uses_roxygen2.Rd’, ‘vapplys.Rd’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(testex)
  > 
  > test_check("testex")
  [ FAIL 1 | WARN 1 | SKIP 2 | PASS 80 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • on R CMD check (1): 'test-options.R:27:3'
  • tests not installed (1): 'test-srcref-key.R:27:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-pkgexample.R:15:5'): test_examples_as_testthat converts examples to tests and executes test suite ──
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error: ! in callr subprocess.
  Caused by error in `library(pkg.example)`:
  ! there is no package called ‘pkg.example’
  Backtrace:
       ▆
    1. ├─testthat::expect_silent(...) at test-pkgexample.R:14:3
    2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ ├─withr::with_output_sink(...)
    5. │   │ │ └─base::force(code)
    6. │   │ ├─base::withCallingHandlers(...)
    7. │   │ └─base::withVisible(code)
    8. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. └─callr::r(...) at test-pkgexample.R:15:5
   10.   └─callr:::get_result(output = out, options)
   11.     └─throw(callr_remote_error(remerr, output), parent = fix_msg(remerr[[3]]))
  
  [ FAIL 1 | WARN 1 | SKIP 2 | PASS 80 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘En-shuo Hsu <daviden1013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "C."),
                      family = "Miecznikowski",
                      role = "aut"),
               person(given = "En-shuo",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "daviden1013@gmail.com"),
               person(given = "Yanhua",
                      family = "Chen",
                      role = "aut"),
               person(given = "Albert",
                      family = "Vexler",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'plotly', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CDMConnector', 'omopgenerics'

Package suggested but not available for checking: ‘CohortConstructor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘bootstrap_test.Rd’:
    https://doi.org/10.1080/01621459.2017.1281813
Maintainer: ‘Manel Salamero <manelsalamero@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manel",
                    family = "Salamero",
                    role = c("aut", "cre"),
                    email = "manelsalamero@gmail.com")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘vincent guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "vincent",
                    family = "guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Juan Domingo Gonzalez <juanrst@hotmail.com>’

The Description field contains
  objects of arbitrary geometries. arXiv preprint <arXiv:2312.16721>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) permucycle.Rd:37: Lost braces; missing escapes or markup?
    37 |  {The 2 in the first row means there are two cycles;}
       |  ^
checkRd: (-1) permucycle.Rd:38: Lost braces; missing escapes or markup?
    38 |   {The second row means there is a cycle of length 2, with members  (1,3);}
       |   ^
checkRd: (-1) permucycle.Rd:39: Lost braces; missing escapes or markup?
    39 |  {The third row means  there is a cycle of length 1, with member  (2);}
       |  ^
checkRd: (-1) permucycle.Rd:40: Lost braces; missing escapes or markup?
    40 |  {The fourth row is redundant for this specific case.}
       |  ^
checkRd: (-1) permucycle.Rd:41: Lost braces; missing escapes or markup?
    41 |  {One can read from the output of permucycle() to obtain cycle notation (13)(2) of the permutation, and other information.}
       |  ^
Maintainer: ‘Alejandro Gonzalez Recuenco <alejandrogonzalezrecuenco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alejandro", "Gonzalez"),
                    family = "Recuenco",
                    role = c("aut", "cre"),
                    email = "alejandrogonzalezrecuenco@gmail.com")
as necessary.
Packages required but not available: 'textclean', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dominik S. Meier <dominikmeier@outlook.com>’

The Description field contains
  'text2sdg' package. See Wulff, Meier and Mata (2023) <arXiv:2301.11353>
  and Meier, Wulff and Mata (2021) <arXiv:2110.05856> for reference.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/text2sdg.Rcheck/00install.out’ for details.
Running massageExamples to create ‘textBoxPlacement-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpvAVXI4/file2bb650d9cf1bb/stagger.R': No space left on device
Execution halted
 NONE
Running massageExamples to create ‘textcat-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpRCtEEf/file2bb68317dfaec6/ECIMCI_profiles.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘lexicon’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matt Taddy <mataddy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Taddy",
                    role = c("aut", "cre"),
                    email = "mataddy@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Inverse Regression for Text Analysis <arXiv:1012.2098> and Taddy (2015,
  AoAS), Distributed Multinomial Regression, <arXiv:1311.6139>. A
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘congress109.Rd’:
    http://dx.doi.org/10.3886/ICPSR26242
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpVjX86E/file2c014137ede5a', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpVjX86E/file2c014137ede5a/CalcGamma.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TextMiningGUI.Rcheck/00install.out’ for details.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprHakWv/file2c008c4c8d70c7/textplot_cooccurrence.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘textra.R’
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘gen_params.Rd’, ‘get_token.Rd’, ‘post_request.Rd’, ‘textra.Rd’
Maintainer: ‘Oscar Kjell <oscar.kjell@psy.lu.se>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available:
  'parsnip', 'recipes', 'rsample', 'tune', 'workflows'

Package suggested but not available for checking: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘recipes’

Package suggested but not available for checking: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luke Miratrix <lmiratrix@stat.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Miratrix",
                    role = c("aut", "cre"),
                    email = "lmiratrix@stat.harvard.edu")
as necessary.
checkRd: (-1) make.phrase.matrix.Rd:20: Lost braces
    20 |  \\tabular{rrrrr}{
       |           ^
checkRd: (-1) make.phrase.matrix.Rd:20-23: Lost braces
    20 |  \\tabular{rrrrr}{
       |                  ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/textreuse.Rcheck/00install.out’ for details.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpcQstfS/Rf2bb69036a6d76': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'lexicon', 'textclean'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Checking relative paths failed with message:
  inferior call failed
Error(s) in re-building vignettes:
  ...
--- re-building ‘btable.Rnw’ using Sweave
Warning in file() :
  cannot open file '/tmp/RtmpmDV7PC/Rf2bd0d66535f244': No space left on device
Error: processing vignette 'btable.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘btable.Rnw’

SUMMARY: processing the following file failed:
  ‘btable.Rnw’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpXxhvgc/file2c1576be633b2/fit.ucarima.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..........Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpV7k3YD/ltx2c330f65375491/uc0.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpZ69GtU/Rf2bd0da23eba2c5': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Curran",
                      role = c("aut", "cre"),
                      email = "j.curran@auckland.ac.nz"),
               person(given = "TingYu",
                      family = "Huang",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘f_km.rmd’ using rmarkdown

Quitting from f_km.rmd:37-44 [load-packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'haven'
---
Backtrace:
    ▆
 1. └─base::library(haven)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'f_km.rmd' failed with diagnostics:
there is no package called 'haven'
--- failed re-building ‘f_km.rmd’

--- re-building ‘table-example.Rmd’ using rmarkdown
--- finished re-building ‘table-example.Rmd’

SUMMARY: processing the following file failed:
  ‘f_km.rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Maintainer: ‘Becca Krouse <becca.z.krouse@gsk.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda.usc', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Note: skipping ‘blood_loss_report.Rnw’ due to unavailable dependencies:
  'rms'
Packages required but not available: 'theft', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Conversion of ‘NEWS.md’ failed:
pandoc: /tmp/RtmpUXTkON/pandoc2bce1f6931b213.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘TheiaAuth.Rd’, ‘TheiaCollection.Rd’, ‘TheiaQuery.Rd’, ‘TheiaTile.Rd’, ‘theiaR.Rd’
Package required but not available: ‘recipes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidySEM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Glenn J. Tattersall <gtatters@brocku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Glenn", "J."),
                    family = "Tattersall",
                    role = c("aut", "cre"),
                    email = "gtatters@brocku.ca")
as necessary.
Maintainer: ‘Francisco Jablinski Castelhano <fjcastelhano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Francisco", "Jablinski", "Castelhano/Laboclima", "-", "Universidade", "Federal", "do"),
                      family = "Paraná",
                      role = "aut"),
               person(given = c("Francisco", "Jablinski"),
                      family = "Castelhano",
                      role = "cre",
                      email = "fjcastelhano@gmail.com"))
as necessary.
Maintainer: ‘Jose Gama <rxprtgama@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: www.madur.com
    From: man/RTDtemperatureFromResistance.Rd
  URI: www.betatherm.com
    From: man/ThermistorSlope.Rd
  URI: www.betatherm.com
    From: man/ThermistorSteinhartHartCoeffFromMeasurements.Rd
  URI: www.betatherm.com
    From: man/ThermistorVolumeResistivityFromR25.Rd
  URI: www.betatherm.com
    From: man/ThermistorVolumeResistivityFromRho.Rd
  URI: www.conaxbuffalo.com
    From: man/ThermocoupleLeadWireExternalResistanceUS.Rd
  URI: www.madur.com
    From: man/rtdResistivityAlpha.Rd
  URI: www.phoenixcontact.com
    From: man/thermocoupleExtensionCables.Rd
  URI: www.tempco.com
    From: man/thermocoupleWireColorUnitedStatesCanadaMexico.Rd
  URI: www.conaxbuffalo.com
    From: man/thermocoupleWireSizeResistanceImperial.Rd
Maintainer: ‘Amit Sasson <amitsasson1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Amit",
                    family = "Sasson",
                    role = c("aut", "cre"),
                    email = "amitsasson1@gmail.com")
as necessary.
Maintainer: ‘Olgun Aydin <olgun.aydin@pg.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olgun",
                      family = "Aydin",
                      role = c("aut", "cre"),
                      email = "olgun.aydin@pg.edu.pl"),
               person(given = "Mustafa",
                      family = "Cavus",
                      role = "aut"))
as necessary.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffmann",
                    role = c("aut", "cre"),
                    email = "tjhoffm@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpbli2IG/Rf2c16ed50a5f66e': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [9s/9s] OK
Error(s) in re-building vignettes:
  ...
--- re-building ‘generate_survey_read_data.Rmd’ using rmarkdown
--- finished re-building ‘generate_survey_read_data.Rmd’

--- re-building ‘plot_2x2.Rmd’ using rmarkdown

Quitting from plot_2x2.Rmd:20-31 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'sjPlot'
---
Backtrace:
    ▆
 1. └─base::library(sjPlot)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'plot_2x2.Rmd' failed with diagnostics:
there is no package called 'sjPlot'
--- failed re-building ‘plot_2x2.Rmd’

--- re-building ‘plot_tg.Rmd’ using rmarkdown

Inserting image 1 at 0.00s (20%)...
Inserting image 2 at 1.00s (40%)...
Inserting image 3 at 2.00s (60%)...
Inserting image 4 at 3.00s (80%)...
Inserting image 5 at 4.00s (100%)...
Encoding to gif... done!
--- finished re-building ‘plot_tg.Rmd’

SUMMARY: processing the following file failed:
  ‘plot_2x2.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'officer', 'rvg'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Holger L. Kern <hkern@fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Holger", "L."),
                    family = "Kern",
                    role = c("aut", "cre"),
                    email = "hkern@fsu.edu")
as necessary.
install log ‘’ does not exist
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Man-Hua Chen <mchen@mail.tku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Man-Hua",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "mchen@mail.tku.edu.tw")
as necessary.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Tao Xiao <taoxiao1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tao",
                    family = "Xiao",
                    role = c("aut", "cre"),
                    email = "taoxiao1@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘dot-imap_guess_object_field_spec.Rd’, ‘dot-is_field_scalar.Rd’, ‘dot-is_list_of_null.Rd’, ‘dot-is_list_of_object_lists.Rd’, ‘dot-is_object.Rd’, ‘dot-is_object_list.Rd’, ‘dot-normalize_id_col_name.Rd’, ‘dot-normalize_parent_col.Rd’, ‘dot-openapi_resolve_reference.Rd’, ‘dot-pad.Rd’
Running massageExamples to create ‘tibblify-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpDENnpn/file2d573626136638': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpDENnpn/file2d573626136638': No such file or directory
Error in file(con, "r") : cannot open the connection
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpGOYZnm/Rf2c16ea69ea966b': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Sergei Izrailev <sizrailev@jabiruventures.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Izrailev",
                    role = c("aut", "cre"),
                    email = "sizrailev@jabiruventures.com")
as necessary.
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson.",
                      role = "aut"),
               person(given = "Alec",
                      family = "Stephenson",
                      role = "cre",
                      email = "alec_stephenson@hotmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tom Cox <tom.cox@uantwerp.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tom",
                      family = "Cox",
                      role = c("aut", "cre"),
                      email = "tom.cox@uantwerp.be"),
               person(given = "Lennert",
                      family = "Schepers",
                      role = "aut",
                      email = "lennert.schepers@uantwerp.be"))
as necessary.
Maintainer: ‘Moritz Mueller-Navarra <muellernavarra@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BuildTT.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
  File ‘SynTT.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
  File ‘TideTable.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Julian Fajardo <julian.fajardo1908@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available:
  'parsnip', 'rsample', 'workflows', 'workflowsets', 'tune'

Packages suggested but not available for checking:
  'recipes', 'multilevelmod', 'rules', 'poissonreg', 'censored',
  'baguette', 'bonsai', 'rstanarm', 'flexsurv', 'discrim', 'klaR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘modelr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'broom.helpers', 'GGally', 'gtsummary', 'haven', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘v01_intro.Rmd’ using rmarkdown
[WARNING] Could not fetch resource "man/figures/korea_map.png"
--- finished re-building ‘v01_intro.Rmd’

--- re-building ‘v02_regional_analysis.Rmd’ using rmarkdown

Quitting from v02_regional_analysis.Rmd:11-22 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggspatial'
---
Backtrace:
    ▆
 1. └─base::library(ggspatial)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'v02_regional_analysis.Rmd' failed with diagnostics:
there is no package called 'ggspatial'
--- failed re-building ‘v02_regional_analysis.Rmd’

--- re-building ‘v03_gallery.Rmd’ using rmarkdown
--- finished re-building ‘v03_gallery.Rmd’

--- re-building ‘v04_data_cleaning_kosis.Rmd’ using rmarkdown
--- finished re-building ‘v04_data_cleaning_kosis.Rmd’

--- re-building ‘v05_contributors_guide.Rmd’ using rmarkdown
--- finished re-building ‘v05_contributors_guide.Rmd’

SUMMARY: processing the following file failed:
  ‘v02_regional_analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘EDA-for-palmer-penguins-data-set.Rmd’ using rmarkdown

Quitting from EDA-for-palmer-penguins-data-set.Rmd:9-15 [data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'EDA-for-palmer-penguins-data-set.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘EDA-for-palmer-penguins-data-set.Rmd’

--- re-building ‘Getting_Started.Rmd’ using rmarkdown
--- finished re-building ‘Getting_Started.Rmd’

--- re-building ‘customize-package.Rmd’ using rmarkdown
--- finished re-building ‘customize-package.Rmd’

--- re-building ‘join_charts.Rmd’ using rmarkdown
--- finished re-building ‘join_charts.Rmd’

SUMMARY: processing the following file failed:
  ‘EDA-for-palmer-penguins-data-set.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'parsnip', 'rsample', 'tune'

Packages suggested but not available for checking:
  'klaR', 'recipes', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gtsummary’

Package suggested but not available for checking: ‘broom.helpers’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'GGally', 'MBESS', 'misty'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'badger', 'framecleaner', 'validata', 'presenter', 'autostats',
  'tidybins'

Packages suggested but not available for checking:
  'broom.mixed', 'EIX', 'tidyverse', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘parsnip’

Packages suggested but not available for checking:
  'recipes', 'workflows', 'rsample', 'tune'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘tidydice.Rmd’ using rmarkdown

Quitting from tidydice.Rmd:31-35 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'explore'
---
Backtrace:
    ▆
 1. └─base::library(explore)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tidydice.Rmd' failed with diagnostics:
there is no package called 'explore'
--- failed re-building ‘tidydice.Rmd’

SUMMARY: processing the following file failed:
  ‘tidydice.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘EdSurvey’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file() :
  cannot open file '/tmp/Rtmpg5KtjG/Rf2c93c06254a509': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Johann Pfitzinger <johann.pfitzinger@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘rsample’

Package suggested but not available for checking: ‘CORElearn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

Packages suggested but not available for checking:
  'fda', 'fdasrvf', 'janitor', 'refund', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dada2', 'ShortRead'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "Myles"),
                    family = "McDonnell",
                    role = c("aut", "cre"),
                    email = "robertmylesmcdonnell@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidygraph.Rcheck/00install.out’ for details.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpwITRO1/file2d076e2c949083', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpwITRO1/file2d076e2c949083/annotation_bar-method.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'

Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.

Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidylda.Rcheck/00install.out’ for details.
Packages required but not available: 'rsample', 'smacof'

Packages suggested but not available for checking:
  'arulesViz', 'car', 'GGally', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘tidyllm-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpO5F5Bd/file2cedc47cfb00b8', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpO5F5Bd/file2cedc47cfb00b8/chat.R': No such file or directory
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpCxmCEx/libloc_197_e39a92db53747c1a.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp7AIpyY/file2d05316fbd2e4a': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp7AIpyY/file2d05316fbd2e4a': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘tidySEM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'parsnip', 'recipes', 'rsample', 'tune', 'workflows', 'workflowsets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Milton <michael.r.milton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Milton",
                    role = c("aut", "cre"),
                    email = "michael.r.milton@gmail.com")
as necessary.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  Fatal error: cannot create 'R_TempDir'
install log ‘’ does not exist
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpFq809G/file2cc86373130ffc/norm_track_wattfab.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp3jhGC9/file2ce9ee23dfea87/label_geochem.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tidy_plate.R’
Packages required but not available: 'ggpubr', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘summarise2.Rd’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidypopgen.Rcheck/00install.out’ for details.
Packages required but not available:
  'rsample', 'rstanarm', 'tune', 'workflowsets'

Package suggested but not available for checking: ‘parsnip’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Running examples in ‘tidypredict-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tidypredict_sql
> ### Title: Returns a SQL query with formula to calculate fitted values
> ### Aliases: tidypredict_sql
> ### Keywords: internal
> 
> ### ** Examples
> 
> library(dbplyr)
Error in library(dbplyr) : there is no package called ‘dbplyr’
Execution halted
Package required but not available: ‘timetk’

Packages suggested but not available for checking:
  'alphavantager', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(tidyquery)
  > 
  > test_check("tidyquery")
  Error in `source_dir()`:
  ! Failed to evaluate './setup-load_data.R'.
  Caused by error in `library()`:
  ! there is no package called 'dbplyr'
  Backtrace:
       ▆
    1. ├─testthat::test_check("tidyquery")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_setup(".", env)
    7. │           └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(...)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       ├─base::suppressPackageStartupMessages(library(dbplyr)) at ./setup-load_data.R:3:1
   15. │                       │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
   16. │                       └─base::library(dbplyr)
   17. │                         └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
   18. └─testthat (local) `<fn>`(`<pckgNtFE>`)
   19.   └─cli::cli_abort(...)
   20.     └─rlang::abort(...)
  Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiMvKY3/file2cb0eb3b34338d/rate_adj_direct.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘skimr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgee’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RHRV’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpX5jKtL/Rf2cc84296933b4': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
install log ‘’ does not exist
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tidymodels', 'spatialsample', 'parsnip', 'recipes', 'rsample',
  'tune', 'workflows', 'workflowsets'

Packages suggested but not available for checking: 'blockCV', 'stacks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Packages suggested but not available for checking:
  'tidyLPA', 'umx', 'mice', 'ggraph', 'blavaan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ttservice', 'Seurat', 'plotly'

Package suggested but not available for checking: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'plotly', 'recipes', 'timetk'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpgrPcA7/ltx2d33ea271129eb/mutate_rowwise.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Warning in file() :
  cannot open file '/tmp/Rtmp14yXhw/Rf2de58f52c18da3': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘freq.Rmd’ using rmarkdown
--- finished re-building ‘freq.Rmd’

--- re-building ‘symbols.Rmd’ using rmarkdown
--- finished re-building ‘symbols.Rmd’

--- re-building ‘tbl_manipulation.Rmd’ using rmarkdown
--- finished re-building ‘tbl_manipulation.Rmd’

--- re-building ‘tidytlg.Rmd’ using rmarkdown

Quitting from tidytlg.Rmd:83-92 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'haven'
---
Backtrace:
    ▆
 1. └─base::library(haven)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tidytlg.Rmd' failed with diagnostics:
there is no package called 'haven'
--- failed re-building ‘tidytlg.Rmd’

--- re-building ‘tlgsetup.Rmd’ using rmarkdown
--- finished re-building ‘tlgsetup.Rmd’

--- re-building ‘univar.Rmd’ using rmarkdown
--- finished re-building ‘univar.Rmd’

SUMMARY: processing the following file failed:
  ‘tidytlg.Rmd’

Error: Vignette re-building failed.
Execution halted
cannot open the connection
problem found in ‘tidyttmoment-package.Rd’
Checking relative paths failed with message:
  cannot open the connection
Packages required but not available: 'dbplyr', 'haven', 'modelr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘tidywater-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpht7fFm/file2d5c95764cd390/biofilter_toc.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘coeff_fitting_chemdose_dbp.Rmd’ using rmarkdown
--- finished re-building ‘coeff_fitting_chemdose_dbp.Rmd’

--- re-building ‘help_functions_blend_waters.Rmd’ using rmarkdown
--- finished re-building ‘help_functions_blend_waters.Rmd’

--- re-building ‘help_functions_chemdose_ph.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpZ4D0FX/Rf2e46941c8a06c5': No space left on device

Quitting from help_functions_chemdose_ph.Rmd:90-107 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from help_functions_chemdose_ph.Rmd:90-107 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'help_functions_chemdose_ph.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘help_functions_chemdose_ph.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown
--- finished re-building ‘intro.Rmd’

--- re-building ‘tidywater.Rmd’ using rmarkdown
--- finished re-building ‘tidywater.Rmd’

SUMMARY: processing the following file failed:
  ‘help_functions_chemdose_ph.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRPfz69/ltx2e5ff06af5738e/calculate_activity.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Giorgio Comai <giorgio.comai@cci.tn.it>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Kent",
                      family = "Johnson",
                      role = "ctb",
                      email = "kjohnson@akoyabio.com"))
as necessary.
Maintainer: ‘Will Kuan <aiien61will@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Will",
                    family = "Kuan",
                    role = c("aut", "cre"),
                    email = "aiien61will@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Siyu Han <siyu.han@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyu",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "siyu.han@helmholtz-muenchen.de"),
               person(given = "Jialing",
                      family = "Huang",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Foppiano",
                      role = "aut"),
               person(given = "Cornelia",
                      family = "Prehn",
                      role = "aut"),
               person(given = "Jerzy",
                      family = "Adamski",
                      role = "aut"),
               person(given = "Karsten",
                      family = "Suhre",
                      role = "aut"),
               person(given = "Ying",
                      family = "Li",
                      role = "aut"),
               person(given = "Giuseppe",
                      family = "Matullo",
                      role = "aut"),
               person(given = "Freimut",
                      family = "Schliess",
                      role = "aut"),
               person(given = "Christian",
                      family = "Gieger",
                      role = "aut"),
               person(given = "Annette",
                      family = "Peters",
                      role = "aut"),
               person(given = "Rui",
                      family = "Wang-Sattler",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘alakazam’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chi Song <song.1188@osu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("George", "C."),
                      family = "Tseng",
                      role = "aut",
                      email = "ctseng@pitt.edu"),
               person(given = c("Wing", "H."),
                      family = "Wong",
                      role = "aut",
                      email = "whwong@stanford.edu"),
               person(given = "Chi",
                      family = "Song",
                      role = "cre",
                      email = "song.1188@osu.edu"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpdplBch/ltx2d088048cd634f/insertFigures.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [5s/5s] OK
Package required but not available: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>’

Reading Rd files failed with message:
  cannot open the connection
Running massageExamples to create ‘timeDate-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpsEWzw3/file2d57ffe42245a', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpsEWzw3/file2d57ffe42245a/base-c.R': No such file or directory
Execution halted
 NONE
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Kaisey",
                      family = "Mandel",
                      role = "aut"),
               person(given = c("David", "A."),
                      family = "van Dyk",
                      role = "aut"),
               person(given = c("Vinay", "L."),
                      family = "Kashyap",
                      role = "aut"),
               person(given = "Xiao-Li",
                      family = "Meng",
                      role = "aut"),
               person(given = "Aneta",
                      family = "Siemiginowska",
                      role = "aut"),
               person(given = "Zhirui",
                      family = "Hu",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.08049>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Maintainer: ‘Toshihiro Umehara <toshi@niceume.com>’

The BugReports field in DESCRIPTION has
  https://github.com/niceume/timeDF
which should likely be
  https://github.com/niceume/timeDF/issues
instead.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [8s/8s] OK
Error in file(open = "w+", encoding = "UTF-8") : 
  cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly
Execution halted
Error in file(open = "w+", encoding = "UTF-8") : 
  cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘timeLineGraphics-Ex.R’ failed
The error occurred in:


R Under development (unstable) (2026-06-06 r90114) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> pkgname <- "timeLineGraphics"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> base::assign(".ExTimings", "timeLineGraphics-Ex.timings", pos = 'CheckExEnv')
> base::cat("name\tuser\tsystem\telapsed\n", file=base::get(".ExTimings", pos = 'CheckExEnv'))
> base::assign(".format_ptime",
+ function(x) {
+   if(!is.na(x[4L])) x[1L] <- x[1L] + x[4L]
+   if(!is.na(x[5L])) x[2L] <- x[2L] + x[5L]
+   options(OutDec = '.')
+   format(x[1L:3L], digits = 7L)
+ },
+ pos = 'CheckExEnv')
> 
> ### * </HEADER>
> library('timeLineGraphics')
Error: package or namespace load failed for ‘timeLineGraphics’:
 .onLoad failed in loadNamespace() for 'R2HTML', details:
  call: unzip(zipfile = file.path(lib, pkg, "output", "R2HTMLstuff.zip"), 
  error: cannot open file '/tmp/Rtmp6DhJZL/runtime/styles/flat/icons.png': No space left on device
Execution halted
Package required but not available: ‘pec’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'recipes', 'rsample', 'plotly'

Packages suggested but not available for checking:
  'modeltime', 'workflows', 'parsnip', 'tune', 'trelliscopejs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'lomb', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tcor.Rd’
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Joris Snellenburg <j.snellenburg@vu.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Grzegorz Klima <dever@post.pl>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Josef",
                      family = "Leydold",
                      role = c("aut", "cre"),
                      email = "josef.leydold@wu.ac.at"),
               person(given = "Carsten",
                      family = "Botts",
                      role = "aut"),
               person(given = "Wolfgang",
                      family = "H\\\"ormann",
                      role = "aut"))
as necessary.
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(tinkr)
  > 
  > test_check("tinkr")
  Saving _problems/test-show-68.R
  [ FAIL 1 | WARN 0 | SKIP 29 | PASS 213 ]
  
  ══ Skipped tests (29) ══════════════════════════════════════════════════════════
  • On CRAN (29): 'test-anchor-links.R:17:1', 'test-anchor-links.R:23:1',
    'test-asis-nodes.R:19:1', 'test-asis-nodes.R:75:1',
    'test-asis-nodes.R:108:1', 'test-attr-nodes.R:1:1', 'test-attr-nodes.R:7:1',
    'test-attr-nodes.R:21:1', 'test-class-yarn.R:21:1', 'test-class-yarn.R:81:1',
    'test-class-yarn.R:103:1', 'test-class-yarn.R:132:1',
    'test-class-yarn.R:334:1', 'test-class-yarn.R:347:1',
    'test-class-yarn.R:360:1', 'test-show.R:1:1', 'test-show.R:14:1',
    'test-show.R:24:1', 'test-show.R:71:1', 'test-show.R:97:1',
    'test-to_md.R:61:1', 'test-to_md.R:91:1', 'test-to_md.R:133:1',
    'test-to_md.R:144:1', 'test-to_md.R:185:1', 'test-to_md.R:232:1',
    'test-to_md.R:247:1', 'test-to_md.R:263:1', 'test-to_md.R:280:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-show.R:68:3'): show_censor() will censor elements ──────────────
  Error in `grDevices::pdf(new, ...)`: cannot open file '/tmp/RtmpaKt3Ou/verify_exec_2d3e4436397e5f'
  Backtrace:
      ▆
   1. └─testthat::expect_snapshot(show_user(blks, force = TRUE)) at test-show.R:68:3
   2.   └─testthat:::expect_snapshot_(...)
   3.     ├─testthat:::with_is_snapshotting(...)
   4.     └─testthat:::verify_exec(quo_get_expr(x), quo_get_env(x), replay)
   5.       └─withr::local_pdf(device_path)
   6.         └─grDevices::pdf(new, ...)
  
  [ FAIL 1 | WARN 0 | SKIP 29 | PASS 213 ]
  Error:
  ! Test failures.
  Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpImzCgZ/Rf2d065a2916d1e9': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Warning in dir.create(filedir) :
  cannot create dir '/tmp/Rtmp5MuhEO/file2d1a1840873c25', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5MuhEO/file2d1a1840873c25/decorators.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available:
  'clusterProfiler', 'Hmisc', 'survminer'

Packages suggested but not available for checking:
  'AnnoProbe', 'FactoMineR', 'factoextra', 'ggpubr', 'org.Rn.eg.db',
  'org.Mm.eg.db', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Conversion of ‘README.md’ failed:
pandoc: /tmp/RtmpMYDd7K/pandoc2cffdfac0bc18.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Fatal error: cannot create 'R_TempDir'
Packages required but not available:
  'fmesher', 'sfnetworks', 'sdmTMB', 'dsem', 'cv'

Packages suggested but not available for checking: 'DHARMa', 'glmmTMB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Camilo Khatchikian <ckhatchikian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrien",
                      family = "Rieux",
                      role = "aut"),
               person(given = "Camilo",
                      family = "Khatchikian",
                      role = c("aut", "cre"),
                      email = "ckhatchikian@gmail.com"))
as necessary.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘GGally’

Package suggested but not available for checking: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brian Salzer <brian.m.salzer@frb.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Hallman",
                      role = "aut",
                      email = "jeffhallman@gmail.com"),
               person(given = "Brian",
                      family = "Salzer",
                      role = "cre",
                      email = "brian.m.salzer@frb.gov"))
as necessary.
checkRd: (-1) tierChart.Rd:332: Lost braces
   332 |   If the input argument code{boxes} is \code{F}, the \code{lBox},
       |                             ^
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpVUErga/file2d8627ebd59ac': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpVUErga/file2d8627ebd59ac': No such file or directory
Error in file(con, "r") : cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘tissot_map.Rd’, ‘tissot_unproject.Rd’, ‘world.Rd’
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Tivy.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TKCat.Rcheck/00install.out’ for details.
Found an obsolete/platform-specific call in the following function:
  ‘.my.tkdev’
Found the platform-specific device:
  ‘X11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Maintainer: ‘Filipe Campelo <fcampelo@ci.uc.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Filipe",
                    family = "Campelo",
                    role = c("aut", "cre"),
                    email = "fcampelo@ci.uc.pt")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Jasin Machkour <jasin.machkour@tu-darmstadt.de>’

The Description field contains
  Machkour, Muma, and Palomar (2022) <arXiv:2110.06048>, Efron, Hastie,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Lukas Soenning [aut, cre, cph] (<https://orcid.org/0000-0002-2705-395X>), German Research Foundation (DFG) [fnd] (018mejw64, Grant number 548274092)’
  Authors@R: ‘Lukas Soenning [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-2705-395X>), German Research Foundation (DFG) [fnd] (ROR: <https://ror.org/018mejw64>, Grant number 548274092)’
Package required but not available: ‘tableone’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jona Lilienthal <lilienthal@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jona",
                    family = "Lilienthal",
                    role = c("aut", "cre"),
                    email = "lilienthal@statistik.tu-dortmund.de")
as necessary.
Maintainer: ‘Muhammed Ali Onder <muhammedalionder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Muhammed", "Ali"),
                    family = "Onder",
                    role = c("aut", "cre"),
                    email = "muhammedalionder@gmail.com")
as necessary.
Package required but not available: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tmap', 'sfnetworks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leafem', 'leafgl', 'leaflegend', 'leafsync'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tmap’

Package suggested but not available for checking: ‘tmap.mapgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tmap', 'tmap.glyphs', 'tmap.networks', 'tmap.cartogram',
  'tmap.mapgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BSgenome', 'Gviz', 'ggbio', 'karyoploteR', 'plotly'

Packages suggested but not available for checking:
  'BSgenomeForge', 'BSgenome.Hsapiens.UCSC.hg38'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jian Li <rweibo@sina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jian",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "rweibo@sina.com")
as necessary.
Maintainer: ‘Andrea Capozio <andreacapozio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Capozio",
                    role = c("aut", "cre"),
                    email = "andreacapozio@gmail.com")
as necessary.
checkRd: (-1) tv_episode_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the episode_id value found in the change entries.
       |                                                 ^
checkRd: (-1) tv_season_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the season_id value found in the change entries.
       |                                                 ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tmfast.Rcheck/00install.out’ for details.
checkRd: (-1) pvalEffectPlot.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:94: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Stefan Theussl <Stefan.Theussl@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Maintainer: ‘Cody Moore <Jumper9400@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cody",
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "jumper9400@gmail.com")
as necessary.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Samsiddhi Bhattacharjee <sb1@nibmg.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Samsiddhi",
                      family = "Bhattacjarjee",
                      role = "aut",
                      email = "sb1@nibmg.ac.in"),
               person(given = "Samsiddhi",
                      family = "Bhattacharjee",
                      role = "cre",
                      email = "sb1@nibmg.ac.in"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tna.Rcheck/00install.out’ for details.
Maintainer: ‘Tore Opsahl <tore@opsahl.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tore",
                    family = "Opsahl",
                    role = c("aut", "cre"),
                    email = "tore@opsahl.co.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Maintainer: ‘Ali Santacruz <amsantac@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "G."),
                      family = "Pontius",
                      role = "aut",
                      email = "rpontius@clarku.edu"),
               person(given = "Ali",
                      family = "Santacruz",
                      role = c("aut", "cre"),
                      email = "amsantac@unal.edu.co"),
               person(given = "Amin",
                      family = "Tayyebi",
                      role = "aut"),
               person(given = "Benoit",
                      family = "Parmentier",
                      role = "aut"),
               person(given = "Kangping",
                      family = "Si",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Get_time_entries.R’
Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpMArqvo/file2debda1a83175': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpMArqvo/file2debda1a83175': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Sara Algeri <salgeri@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sara",
                    family = "Algeri",
                    role = c("aut", "cre"),
                    email = "salgeri@umn.edu")
as necessary.

The Description field contains
  <arXiv:1803.03858>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lincoln Mullen <lincoln@lincolnmullen.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Abedrahim Ben rebia <b.abedrahim@tomba.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Abedrahim", "Ben"),
                      family = "rebia",
                      role = c("ctb", "aut", "cre"),
                      email = "b.abedrahim@tomba.io"),
               person(family = "Tomba.io",
                      role = c("cph", "aut")))
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [3s/3s] OK
Encountered the following conversion/validation errors:
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
checkRd: (-1) jsonStr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Format data as a JSON object (like this: {"x": "120"}).}
       |                                                 ^
checkRd: (-1) jsonStr.Rd:18: Lost braces; missing escapes or markup?
    18 | Format data as a JSON object (like this: {"x": "120"}).
       |                                          ^
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) fixed_width_no_modeling.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Mouloud Belbahri <mouloud.belbahri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mouloud",
                      family = "Belbahri",
                      role = c("aut", "cre"),
                      email = "mouloud.belbahri@gmail.com"),
               person(given = "Olivier",
                      family = "Gandouet",
                      role = "aut"),
               person(given = "Alejandro",
                      family = "Murua",
                      role = "aut"),
               person(given = c("Vahid", "Partovi"),
                      family = "Nia",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpGW4kTI/ltx2e48fc752731a5/BinUplift2d.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Gregory W. Schwartz <gsch@pennmedicine.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gregory", "W."),
                    family = "Schwartz",
                    role = c("aut", "cre"),
                    email = "gsch@pennmedicine.upenn.edu")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpTUlwkF/file2dc63d16f031b0/toon_stream_rows.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘toOrdinal-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpbpDKf6/file2db02a3c5ce318/toOrdinal.R': No space left on device
Execution halted
 NONE
Packages required but not available: 'Arothron', 'morphomap', 'DescTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup?
    21 | Recommended range is in {5, ..., 20}.}
       |                         ^
checkRd: (-1) getSegsExtra.Rd:14: Lost braces
    14 | \item{data}{data.table returned from function /code{tdtr}}
       |                                                    ^
Maintainer: ‘Doug Friedman <doug.nhp@gmail.com>’

The Description field contains
  <arXiv:1206.4631v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Minzhe Wang <minzhew@uchicago.edu>’

The Description field contains
  (2017) <arXiv:1704.07016>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bastian Pfeifer <bastian.pfeifer@medunigraz.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "G."),
                      family = "Schimek",
                      role = "aut"),
               person(given = "Eva",
                      family = "Budinska",
                      role = "aut"),
               person(given = "Jie",
                      family = "Ding",
                      role = "aut"),
               person(given = c("Karl", "G."),
                      family = "Kugler",
                      role = "aut"),
               person(given = "Vendula",
                      family = "Svendova",
                      role = "aut"),
               person(given = "Shili",
                      family = "Lin",
                      role = "aut"),
               person(given = "Bastian",
                      family = "Pfeifer",
                      role = c("aut", "cre"),
                      email = "bastian.pfeifer@medunigraz.at"))
as necessary.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'RGtk2', 'gWidgets2RGtk2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabriele Sales <gabriele.sales@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sofia",
                      family = "Massa",
                      role = "aut"),
               person(given = "Gabriele",
                      family = "Sales",
                      role = c("aut", "cre"),
                      email = "gabriele.sales@unipd.it"))
as necessary.
Package required but not available: ‘qpgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gilberto Camara <gilberto.camara.inpe@gmail.com>’

The Description field contains
  (a) 'adabelief' by Zhuang et al (2020), <arXiv:2010.07468>; (b)
  'adabound' by Luo et al.(2019), <arXiv:1902.09843>; (c) 'adahessian' by
  Yao et al.(2021) <arXiv:2006.00719>; (d) 'adamw' by Loshchilov & Hutter
  (2019), <arXiv:1711.05101>; (e) 'madgrad' by Defazio and Jelassi
  (2021), <arXiv:2101.11075>; (f) 'nadam' by Dozat (2019),
  Ma and Yarats(2019), <arXiv:1810.06801>; (h) 'radam' by Liu et al.
  (2019), <arXiv:1908.03265>; (i) 'swats' by Shekar and Sochee (2018),
  <arXiv:1712.07628>; (j) 'yogi' by Zaheer et al.(2019),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tomasz Kalinowski <tomasz@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Nuria Senar <n.senarvilladeamigo@amsterdamumc.nl>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'Hmisc', 'webuse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘cassowaryr’

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Package required but not available: ‘regtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘response_builder.R’
Package required but not available: ‘drc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/toxEval.Rcheck/00install.out’ for details.
Package required but not available: ‘flextable’

Package suggested but not available for checking: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ronja Foraita <foraita@leibniz-bips.de>’

The Description field contains
  <arXiv:2108.13395> provide a guide how to use tpc to analyse cohort
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Carlos P. Carmona <perezcarmonacarlos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "P."),
                    family = "Carmona",
                    role = c("aut", "cre"),
                    email = "perezcarmonacarlos@gmail.com")
as necessary.
Maintainer: ‘Wei Jiang <jiangwei@hrbmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Jiang",
                    role = c("aut", "cre"),
                    email = "jiangwei@hrbmu.edu.cn")
as necessary.
Package required but not available: ‘MESS’

Package suggested but not available for checking: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alessio Locallo <alessio.locallo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessio",
                      family = "Locallo",
                      role = c("aut", "cre"),
                      email = "alessio.locallo@gmail.com"),
               person(given = "Davide",
                      family = "Prandi",
                      role = "aut",
                      email = "davide.prandi@unitn.it"),
               person(given = "Francesca",
                      family = "Demichelis",
                      role = "aut",
                      email = "f.demichelis@unitn.it"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jun Yan <jun.yan@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jun",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "jun.yan@uconn.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Chanwoo Lee <chanwoo.lee@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chanwoo",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "chanwoo.lee@wisc.edu"),
               person(given = "Lexin",
                      family = "Li",
                      role = "aut",
                      email = "lexinli@berkeley.edu"),
               person(given = c("Hao", "Helen"),
                      family = "Zhang",
                      role = "aut",
                      email = "hzhang@math.arizona.edu"),
               person(given = "Miaoyan",
                      family = "Wang",
                      role = "aut",
                      email = "miaoyan.wang@wisc.edu"))
as necessary.

The Description field contains
  Series Representation. <arXiv:2105.01783>. The method employs the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Filipe Campelo <fcampelo@uc.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Filipe",
                    family = "Campelo",
                    role = c("aut", "cre"),
                    email = "fcampelo@uc.pt")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/track2KBA.Rcheck/00install.out’ for details.
Maintainer: ‘Marjolein Bruijning <m.bruijning@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marjolein",
                      family = "Bruijning",
                      role = c("aut", "cre"),
                      email = "m.bruijning@uva.nl"),
               person(given = c("Marco", "D."),
                      family = "Visser",
                      role = "aut"),
               person(given = c("Caspar", "A."),
                      family = "Hallmann",
                      role = "aut"),
               person(given = "Eelke",
                      family = "Jongejans",
                      role = "aut"))
as necessary.
Maintainer: ‘Claudio Zandonella Callegher <claudiozandonella@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'trackeR', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'ggmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'oeli', 'optimizeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brian Battaile <brian.battaile@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brian",
                    family = "Battaile",
                    role = c("aut", "cre"),
                    email = "brian.battaile@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TrackTrap.Rcheck/00install.out’ for details.
Packages required but not available: 'rsample', 'caret', 'ez'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Kleanthis Koupidis <koupidis.okfgr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kleanthis",
                      family = "Koupidis",
                      role = c("aut", "cre"),
                      email = "koupidis.okfgr@gmail.com"),
               person(given = "Aikaterini",
                      family = "Chatzopoulou",
                      role = "aut"),
               person(given = "Charalampos",
                      family = "Bratsas",
                      role = "aut"),
               person(given = "Panagiotis",
                      family = "Tzenos",
                      role = "dtc"),
               person(given = c("Josep", "Maria"),
                      family = "Salanova",
                      role = "dtc"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQVqXdR/ltx2efb223e804d8a/augment_roads.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘adabag’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
checkRd: (-1) trait_missing.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
Error(s) in re-building vignettes:
  ...
--- re-building ‘simulations.Rmd’ using rmarkdown
--- finished re-building ‘simulations.Rmd’

--- re-building ‘stop-start.Rmd’ using rmarkdown
--- finished re-building ‘stop-start.Rmd’

--- re-building ‘trajr-vignette.Rmd’ using rmarkdown

Quitting from trajr-vignette.Rmd:172-191 [resample]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/RtmpWoeUop/file2ecae32e505b7c'
---
Backtrace:
    ▆
 1. ├─base::plot(trj, lwd = 2)
 2. └─trajr:::plot.Trajectory(trj, lwd = 2)
 3.   ├─graphics::plot(...)
 4.   └─graphics::plot.default(...)
 5.     └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'trajr-vignette.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpWoeUop/file2ecae32e505b7c'
--- failed re-building ‘trajr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘trajr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpvODzy9/file2ed0a349817fc8': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpvODzy9/file2ed0a349817fc8': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Balint Tamasi <balint.tamasi+tramME@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: Balint.Tamasi@uzh.ch
    From: inst/doc/mixed-effects-additive-models.pdf
  URI: Torsten.Hothorn@R-project.org
    From: inst/doc/mixed-effects-additive-models.pdf
Note: skipping ‘mixed-effects-additive-models.Rnw’ due to unavailable dependencies:
  'glmmTMB'
Maintainer: ‘Rich FitzJohn <rich.fitzjohn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Note: skipping ‘mtram.Rnw’ due to unavailable dependencies:
  'glmmTMB', 'geepack'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/transforEmotion.Rcheck/00install.out’ for details.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Babak Naderi <bnaderi9@gmail.com>’

The Description field contains
  Möller (2020) <arXiv:2004.11490>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6U9rgE/file2e505e4502c190/identify.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristhian Paredes <craparedesca@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristhian",
                      family = "Paredes",
                      role = c("aut", "cre"),
                      email = "craparedesca@unal.edu.co"),
               person(given = c("Eduardo", "Rodríguez", "de", "San"),
                      family = "Miguel",
                      role = "aut"))
as necessary.
Package required but not available: ‘ggformula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRdePvl/file2ea30f74feee8': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpRdePvl/file2ea30f74feee8': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Somenath Sit <somenath.bhu.2010@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somenath",
                    family = "Sit",
                    role = c("aut", "cre"),
                    email = "somenath.bhu.2010@gmail.com")
as necessary.
Packages required but not available:
  'sva', 'ggpubr', 'ggtree', 'ggraph', 'tidygraph', 'Hmisc'

Package suggested but not available for checking: ‘ggtreeExtra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Almut E. D. Veraart <a.veraart@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Almut", "E.", "D."),
                    family = "Veraart",
                    role = c("aut", "cre"),
                    email = "a.veraart@imperial.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lam Opal Huang <opal.huang@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lam", "Opal"),
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "opal.huang@mail.mcgill.ca")
as necessary.
Packages required but not available: 'dbplyr', 'Andromeda', 'CDMConnector'

Packages suggested but not available for checking:
  'Eunomia', 'DatabaseConnector', 'CohortGenerator',
  'ResultModelManager', 'plotly', 'sunburstR', 'visOmopResults', 'PaRe'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tyler Morgan-Wall <tylermw@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tree_mesh.R’ ‘zzz.R’
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Silvestre Garcia de Jalon <s.garciadejalon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Silvestre", "Garcia"),
                    family = "de Jalon",
                    role = c("aut", "cre"),
                    email = "s.garciadejalon@gmail.com")
as necessary.
Maintainer: ‘Wen Tian (Wendy) Wang <wtwang@sfu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Wen", "Tian", "Wang,Lloyd"),
                      family = "Elliott",
                      role = "aut",
                      comment = "Wendy"),
               person(given = c("Wen", "Tian"),
                      family = "Wang",
                      role = "cre",
                      email = "wtwang@sfu.ca",
                      comment = "Wendy"))
as necessary.
Package required but not available: ‘HiCDOC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘treefit-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: generate_n_arms_star_data
> ### Title: Generate a multi-dimensional star tree data
> ### Aliases: generate_n_arms_star_data
> 
> ### ** Examples
> 
> # Generate a 100-dimensional star tree data that contain 500 data points
> # and fit a star tree with 3 arms. The generated data are a bit noisy but
> # tree-like.
> star100.tree_like <- treefit::generate_n_arms_star_data(100, 500, 3, 0.1)
> # Reduce dimension to visualize.
> star3.tree_like = prcomp(star100.tree_like, rank.=3)$x
> plotly::plot_ly(data.frame(star3.tree_like),
+                 x=~PC1,
+                 y=~PC2,
+                 z=~PC3,
+                 type="scatter3d",
+                 mode="markers",
+                 marker=list(size=1))
Error in loadNamespace(x) : there is no package called ‘plotly’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/treeheatr.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TreeSearch.Rcheck/00install.out’ for details.
Maintainer: ‘Oskar Hagen <oskar.hagen@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oskar",
                      family = "Hagen",
                      role = c("aut", "cre"),
                      email = "oskar.hagen@outlook.com"),
               person(given = "Tanja",
                      family = "Stadler",
                      role = "aut"))
as necessary.
Package required but not available: ‘TreeSim’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tanja Stadler <tanja.stadler@bsse.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tanja",
                    family = "Stadler",
                    role = c("aut", "cre"),
                    email = "tanja.stadler@bsse.ethz.ch")
as necessary.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Intro-treesliceR.Rmd’ using rmarkdown
--- finished re-building ‘Intro-treesliceR.Rmd’

--- re-building ‘Passeriformes-distribution.Rmd’ using rmarkdown

Quitting from Passeriformes-distribution.Rmd:21-26 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggpubr'
---
Backtrace:
    ▆
 1. └─base::library(ggpubr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Passeriformes-distribution.Rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘Passeriformes-distribution.Rmd’

--- re-building ‘Passeriformes-diversification.Rmd’ using rmarkdown

Quitting from Passeriformes-diversification.Rmd:21-27 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggpubr'
---
Backtrace:
    ▆
 1. └─base::library(ggpubr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Passeriformes-diversification.Rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘Passeriformes-diversification.Rmd’

SUMMARY: processing the following files failed:
  ‘Passeriformes-distribution.Rmd’ ‘Passeriformes-diversification.Rmd’

Error: Vignette re-building failed.
Execution halted
install log ‘’ does not exist
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphI5CvD/file2ed0d8745ded75/pigot_rho.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
Running examples in ‘treestructure-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.TreeStructure
> ### Title: Plot TreeStructure tree with cluster and partition variables
> ### Aliases: plot.TreeStructure
> 
> ### ** Examples
> 
> 
> #tree <- ape::read.tree( system.file('sim.nwk', package = 'treestructure') )
> # you can run the example below before plotting
> #struc <- trestruct( tree )
> 
> #because it can take a minute or so to run treestructure, we will load it here
> struc <- readRDS( system.file('struc_plot_example.rds', package='treestructure') )
> #plot treestructure object
> 
> suppressWarnings(plot(struc))
Error in .plot.TreeStructure.ggtree(x, ...) : 
  "ggtree" %in% utils::installed.packages()[, 1] is not TRUE
Execution halted
Packages required but not available: 'ggpubr', 'spanner'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘rsample’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ashkan Ertefaie <ashkan_ertefaie@urmc.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xinyao",
                      family = "Ji",
                      role = "aut"),
               person(given = "Ashkan",
                      family = "Ertefaie",
                      role = c("aut", "cre"),
                      email = "ashkan_ertefaie@urmc.rochester.edu"))
as necessary.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'FSA', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jasin Machkour <jasin.machkour@tu-darmstadt.de>’

The Description field contains
  (2022) <arXiv:2110.06048>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
install log ‘’ does not exist
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/trialr.Rcheck/00install.out’ for details.
Maintainer: ‘Vicky Qian Wu <wuqian7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ed", "Zhang", ";", "Vicky", "Qian", "Wu", ";", "Shein-Chung", "Chow", ";", "Harry"),
                      family = "G.Zhang",
                      role = "aut",
                      email = "ed.zhang.jr@gmail.com",
                      comment = "Quality check"),
               person(given = c("Vicky", "Qian"),
                      family = "Wu",
                      role = "cre",
                      email = "wuqian7@gmail.com"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpfVU8sT/file2f19a81d0c69af/Tricolore.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TriDimRegression.Rcheck/00install.out’ for details.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Drew",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Yuuki",
                      family = "Takano",
                      role = "cph"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmG6pJ5/ltx2eecbe4da26d0f/sPwRholmye.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'caret', 'factoextra', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Phil Mike Jones <philmikejones@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timo Stöcker <timo.stoecker@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Timo",
                      family = "Stöcker",
                      role = c("aut", "cre"),
                      email = "timo.stoecker@hhu.de"),
               person(given = "Noah",
                      family = "Simon",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

The BugReports field in DESCRIPTION has
  https://github.com/Trackage/tripEstimation
which should likely be
  https://github.com/Trackage/tripEstimation/issues
instead.
Package required but not available: ‘BMisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richard Ambler <rambler@ibwya.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Richard",
                    family = "Ambler",
                    role = c("aut", "cre"),
                    email = "rambler@ibwya.net")
as necessary.
Malformed Title field: should not end in a period.
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Somjit Roy <somjit.roy2001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somjit",
                    family = "Roy",
                    role = c("aut", "cre"),
                    email = "somjit.roy2001@gmail.com")
as necessary.
Maintainer: ‘David Hugh-Jones <davidhughjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hugh-Jones",
                    role = c("aut", "cre"),
                    email = "davidhughjones@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yuyao Wang <yuw079@ucsd.edu>’

The Description field contains
  dependent left truncation" <arXiv:2208.06836>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederick",
                      family = "Novomestky",
                      role = c("aut", "cre"),
                      email = "fn334@nyu.edu"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut",
                      email = "saralees.nadarajah@manchester.ac.uk"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Annemarie Pläschke <anneplaeschke@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [4s/4s] OK
Maintainer: ‘Rainer Schlittgen <R.Schlittgen@t-online.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rainer",
                    family = "Schlittgen",
                    role = c("aut", "cre"),
                    email = "r.schlittgen@t-online.de")
as necessary.
Maintainer: ‘Kung-Sik Chan <kungsik.chan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kung-Sik",
                      family = "Chan",
                      role = c("aut", "cre"),
                      email = "kungsik.chan@gmail.com"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "aut"))
as necessary.
checkRd: (-1) summary.armasubsets.Rd:16: Lost braces
    16 | \item{matrix.logical}{With matrix=TRUE, the matrix is logical TRUE/FALSE or string "*"/code{" "}}
       |                                                                                            ^
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ICtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tscv.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_distance.R’ ‘reason_dataleaks.R’ ‘viz_dataleaks.R’
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Maintainer: ‘Javier López-de-Lacalle <javlacalle@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "López-de-Lacalle",
                    role = c("aut", "cre"),
                    email = "javlacalle@yahoo.es")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘tsdecomp-package.Rd’:
    \keyword{package, ts}
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jorge Vieira <jorgealexandrevieira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jorge",
                    family = "Vieira",
                    role = c("aut", "cre"),
                    email = "jorgealexandrevieira@gmail.com")
as necessary.
Maintainer: ‘Luke Mosley <l.mosley@lancaster.ac.uk>’

The Description field contains
  <arXiv:2108.05783> for disaggregating low-frequency series in the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘tsdistributions-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vitor Cerqueira <cerqueira.vitormanuel@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hakki Sabah <hakkisabah@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hakki",
                    family = "Sabah",
                    role = c("aut", "cre"),
                    email = "hakkisabah@hotmail.com")
as necessary.
install log ‘’ does not exist
Maintainer: ‘Antonio Fabio Di Narzo <antonio.fabio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Antonio",
                      role = c("aut", "cre"),
                      email = "antonio.fabio@gmail.com"),
               person(given = c("Fabio", "Di"),
                      family = "Narzo",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘tsfeatures.Rmd’ using rmarkdown
trying URL 'https://github.com/robjhyndman/tsfeatures/raw/master/extra-data/yahoo.rda'
Content type 'application/octet-stream' length 7897660 bytes (7.5 MB)
==================================================
downloaded 7.5 MB

trying URL 'https://github.com/robjhyndman/tsfeatures/raw/master/extra-data/hwl.rda'
Content type 'application/octet-stream' length 185319 bytes (180 KB)
==================================================
downloaded 180 KB

trying URL 'https://github.com/robjhyndman/tsfeatures/raw/master/extra-data/khs.rda'
Content type 'application/octet-stream' length 85185 bytes (83 KB)
==================================================
downloaded 83 KB


Quitting from tsfeatures.Rmd:425-440 [ijf2017graphs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'GGally'
---
Backtrace:
    ▆
 1. ├─... %>% GGally::ggpairs()
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsfeatures.Rmd' failed with diagnostics:
there is no package called 'GGally'
--- failed re-building ‘tsfeatures.Rmd’

SUMMARY: processing the following file failed:
  ‘tsfeatures.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Francisco Martinez <fmartin@ujaen.es>’

The BugReports field in DESCRIPTION has
  https://github.com/franciscomartinezdelrio/tsfgrnn
which should likely be
  https://github.com/franciscomartinezdelrio/tsfgrnn/issues
instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘tsfgrnn.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpbxFSS5/Rf2f72fd7b8d85b8': No space left on device

Quitting from tsfgrnn.Rmd:214-216 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from tsfgrnn.Rmd:214-216 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsfgrnn.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘tsfgrnn.Rmd’

SUMMARY: processing the following file failed:
  ‘tsfgrnn.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpqYoDlI/Rd2pdf2efa3139332cd3/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpI73fLL/file2f93b1e118a01/tsmltest.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sandipan",
                      family = "Samanta",
                      role = "aut"),
               person(given = c("Ranjit", "Kumar"),
                      family = "Paul",
                      role = "aut"),
               person(given = "Dipankar",
                      family = "Mitra",
                      role = "aut"),
               person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = "cre",
                      email = "ranjitstat@gmail.com"))
as necessary.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQE1YWF/file2f6abf62b9cdf5/forecast_peak.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘tsgc_vignette.Rmd’ using rmarkdown

Quitting from tsgc_vignette.Rmd:15-34 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'timetk'
---
Backtrace:
    ▆
 1. └─base::library(timetk)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsgc_vignette.Rmd' failed with diagnostics:
there is no package called 'timetk'
--- failed re-building ‘tsgc_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘tsgc_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'haven', 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yao-Hwei Fang <yhfang@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yao-Hwei",
                      family = "Fang",
                      role = c("aut", "cre"),
                      email = "yhfang@nhri.org.tw"),
               person(given = "Jie-Huei",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Chao", "A."),
                      family = "Hsiung",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Sheng",
                      role = "aut"),
               person(given = "Peihua",
                      family = "Qiu",
                      role = "aut",
                      email = "pqiu@ufl.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpqWcFBU/ltx2f4c5f4be0a4ab/PBS.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘crost.Rd’, ‘crost.decomp.Rd’, ‘crost.ma.Rd’, ‘data.frc.Rd’
Packages required but not available: 'tsaux', 'flextable'

Package suggested but not available for checking: ‘tstests’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tsgarch’

Package suggested but not available for checking: ‘tstests’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Roger", "D."),
                      family = "Peng",
                      role = c("aut", "cre"),
                      email = "roger.peng@austin.utexas.edu"),
               person(given = c("with", "contributions", "from", "Aidan"),
                      family = "McDermott",
                      role = "aut"))
as necessary.
Running examples in ‘tsna-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pShiftCount
> ### Title: Compute Counts of Gibson's Participation Shifts
> ### Aliases: pShiftCount
> 
> ### ** Examples
> 
> data(McFarland_cls33_10_16_96)
> pShiftCount(cls33_10_16_96)
Loading required namespace: relevent
Failed with error:  ‘there is no package called ‘relevent’’
Error in loadNamespace(x) : there is no package called ‘relevent’
Calls: pShiftCount ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Javier López-de-Lacalle <javlacalle@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "López-de-Lacalle",
                    role = c("aut", "cre"),
                    email = "javlacalle@yahoo.es")
as necessary.
Maintainer: ‘Jouni Helske <jouni.helske@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jouni",
                    family = "Helske",
                    role = c("aut", "cre"),
                    email = "jouni.helske@iki.fi")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Bernd Bischl <bernd_bischl@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = c("aut", "cre"),
                      email = "bernd_bischl@gmx.net"),
               person(given = "Jakob",
                      family = "Bossek",
                      role = "aut",
                      email = "jakob.bossek@tu-dortmund.de"),
               person(given = "Olaf",
                      family = "Mersmann",
                      role = "aut",
                      email = "olafm@p-value.net"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'DescTools', 'daltoolbox'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Laurinec <tsreprpackage@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) repr_dwt.Rd:28: Lost braces; missing escapes or markup?
    28 | The final representation has length equal to floor(n / 2^{level}), where n is a length of original time series.
       |                                                          ^
Maintainer: ‘Michał Narajewski <michal.narajewski@uni-due.de>’

Reading Rd files failed with message:
  cannot open the connection

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Avi Blinder <aviblinder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Avi",
                    family = "Blinder",
                    role = c("aut", "cre"),
                    email = "aviblinder@gmail.com")
as necessary.
Maintainer: ‘Arden Burrell <arden.burrell@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'car'

Package suggested but not available for checking: ‘tsgarch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alberto Lopez Moreno <bertolomo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alberto", "Lopez"),
                    family = "Moreno",
                    role = c("aut", "cre"),
                    email = "bertolomo@gmail.com")
as necessary.
Running examples in ‘TSVC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: TSVC
> ### Title: Tree-Structured Modelling of Varying Coefficients
> ### Aliases: TSVC print.TSVC
> 
> ### ** Examples
> 
> # Swiss Labour Market 
> library(AER)
Error in library(AER) : there is no package called ‘AER’
Execution halted
Error: inferior call failed
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘tsvrvignette.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpDkdI7F/Rf2f68302509923b': No space left on device

Quitting from tsvrvignette.Rmd:115-122 [vreq_classic_demo]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from tsvrvignette.Rmd:115-122 [vreq_classic_demo]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsvrvignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘tsvrvignette.Rmd’

SUMMARY: processing the following file failed:
  ‘tsvrvignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpwHO1tt/file2f6a3269896775': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpwHO1tt/file2f6a3269896775': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Bivin Sadler <bsadler@smu.edu>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpDX9NGN/file2f696a1be523b1': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpDX9NGN/file2f696a1be523b1': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'spatstat', 'spatstat.linnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marco Albrecht <marco.albrecht@posteo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Albrecht",
                    role = c("aut", "cre"),
                    email = "marco.albrecht@posteo.de")
as necessary.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Antonio Meneses <antoniomenesesfreire@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Meneses",
                      role = c("aut", "cre"),
                      email = "antoniomenesesfreire@hotmail.com"),
               person(given = "Salvador",
                      family = "Naya",
                      role = "aut",
                      email = "salva@udc.es"),
               person(given = "Javier",
                      family = "Tarrio-Saavedra",
                      role = "aut",
                      email = "jtarrio@udc.es"))
as necessary.
Maintainer: ‘Carlos A. Martinez <amartin@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A.", "Martinez", "based", "on", "the", "work", "of"),
                      family = "Ribeiro",
                      role = c("aut", "cre")),
               person(family = "Rosseti.",
                      comment = "2015"),
               person(given = c("Carlos", "A."),
                      family = "Martinez",
                      role = "cre",
                      email = "amartin@unal.edu.co"))
as necessary.
Maintainer: ‘Thorn Thaler <thorn.thaler@thothal.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorn",
                    family = "Thaler",
                    role = c("aut", "cre"),
                    email = "thorn.thaler@thothal.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TUFLOWR.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Michael C Sachs <sachsmc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Sachs",
                    role = c("aut", "cre"),
                    email = "sachsmc@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pbkrtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yuqing Pan <yuqing.pan@stat.fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuqing",
                      family = "Pan",
                      role = c("aut", "cre"),
                      email = "yuqing.pan@stat.fsu.edu"),
               person(given = "Qing",
                      family = "Mai",
                      role = "aut",
                      email = "mai@stat.fsu.edu"),
               person(given = "Xin",
                      family = "Zhang",
                      role = "aut",
                      email = "henry@stat.fsu.edu"))
as necessary.

The Description field contains
  (2019) <arXiv:1904.03469>. Functions are included for covariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Julia Wilkerson <jmwilkers@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julia",
                    family = "Wilkerson",
                    role = c("aut", "cre"),
                    email = "jmwilkers@outlook.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christoph",
                      family = "Müssel",
                      role = "aut"),
               person(given = "Ludwig",
                      family = "Lausser",
                      role = "aut"),
               person(given = "Hans",
                      family = "Kestler",
                      role = c("aut", "cre"),
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
Packages required but not available:
  'GauPro', 'parsnip', 'recipes', 'rsample', 'workflows'

Packages suggested but not available for checking: 'censored', 'probably'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Frederic Bertrand <frederic.bertrand@lecnam.net>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Feifei ZHANG<tushare_pro@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feifei",
                    family = "ZHANG",
                    role = c("aut", "cre"),
                    email = "tushare_pro@163.com")
as necessary.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘DescToolsAddIns’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Juan Manuel Truppia <jmtruppia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Manuel"),
                    family = "Truppia",
                    role = c("aut", "cre"),
                    email = "jmtruppia@gmail.com")
as necessary.
‘gs+qpdf’ made some significant size reductions:
     compacted ‘thesis.pdf’ from 482Kb to 216Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
Package required but not available: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
problems found in ‘rmst_delta.Rd’, ‘rmst_dynamic.Rd’
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpO9shEs/Rf2f93c33343603e': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Maintainer: ‘Thomas Lin Pedersen <thomasp85@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Michael Swanson <dms866@mail.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Swanson",
                    role = c("aut", "cre"),
                    email = "dms866@mail.harvard.edu")
as necessary.
Maintainer: ‘Atchanut Rattanalertnusorn <atchanut_r@rmutt.ac.th>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TwoRegression.Rcheck/00install.out’ for details.
Maintainer: ‘Connor Dowd <cd@codowd.com>’

Reading Rd files failed with message:
  cannot open the connection

The Description field contains
  that of Anderson-Darling. See the companion paper at <arXiv:2007.01360>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TwoTimeScales.Rcheck/00install.out’ for details.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
problems found in ‘twoway.Rd’, ‘twoway.formula.Rd’
Packages required but not available: 'onewaytests', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^
Maintainer: ‘Sebastien Thonnard <sebastien.thonnard@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Thonnard",
                    role = c("aut", "cre"),
                    email = "sebastien.thonnard@icloud.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/uavRmp.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ubair.Rcheck/00install.out’ for details.
Maintainer: ‘Christophe Zemmour <christophe.zemmour@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "Esterni", "with", "contribution", "from", "Baboukar"),
                      family = "Mane",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Zemmour",
                      role = "cre",
                      email = "christophe.zemmour@gmail.com"))
as necessary.
Packages required but not available: 'flextable', 'onbrand'

Packages suggested but not available for checking:
  'babelmixr2', 'GGally', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ubms.Rcheck/00install.out’ for details.
Maintainer: ‘Mikaela Koutrouli <mikaela.koutrouli@cpr.ku.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gabriela Cybis <gcybis@gmail.com>’

The Description field contains
  Valk and Gabriela B. Cybis (2021) <arXiv:2106.09115>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking:
  'funkyheatmap', 'ggstatsplot', 'plotly', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luc Duchateau <Luc.Duchateau@ugent.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hans",
                      family = "Laevens",
                      role = "aut"),
               person(given = "Luc",
                      family = "Duchateau",
                      role = c("aut", "cre"),
                      email = "luc.duchateau@ugent.be"),
               person(given = "Klara",
                      family = "Goethals",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"),
               person(given = "Paul",
                      family = "Janssen",
                      role = "aut"))
as necessary.
Maintainer field differs from that derived from Authors@R
  Maintainer: ‘ORPHANED’
  Authors@R:  ‘James Hiebert <hiebert@uvic.ca>’
Packages required but not available: 'FactoMineR', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpdMBPf9/file3079e66774153c/disattenuate.d.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Minna Genbaeck <minna.genback@umu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minna",
                      family = "Genbaeck,",
                      role = c("aut", "cre")),
               person(given = "Minna",
                      family = "Genbaeck",
                      role = "cre",
                      email = "minna.genback@umu.se"))
as necessary.
Package required but not available: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Scott C Ritchie <sritchie73@gmail.com>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpBLblOr/Rf2fc7be4dfe7f1': No space left on device
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ulex.Rcheck/00install.out’ for details.
Maintainer: ‘Kaniav Kamary <kamary@ceremade.dauphine.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaniav",
                      family = "Kamary",
                      role = c("aut", "cre"),
                      email = "kamary@ceremade.dauphine.fr"),
               person(given = "Kate",
                      family = "Lee",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggpubr', 'car', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tomasz Konopka <tokonopka@gmail.com>’

The Description field contains
  (2018) in <arXiv:1802.03426>. This package provides an interface for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘AdaptGauss’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Linus Seelinger <mail@linusseelinger.de>’

The BugReports field in DESCRIPTION has
  https://github.com/um-bridge
which should likely be
  https://github.com/um-bridge/issues
instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mc2d’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = c("Glen", "D."),
                      family = "Meeden",
                      role = "aut",
                      email = "glen@stat.umn.edu"))
as necessary.
Package required but not available: ‘DiagrammeR’

Package suggested but not available for checking: ‘bestNormalize’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Piotr Fryzlewicz <p.fryzlewicz@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Piotr",
                    family = "Fryzlewicz",
                    role = c("aut", "cre"),
                    email = "p.fryzlewicz@lse.ac.uk")
as necessary.
Packages required but not available: 'GGally', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘officedown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/unheadr.Rcheck/00install.out’ for details.
Maintainer: ‘Yunro Chung <yunro.chung@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yunro",
                    family = "Chung",
                    role = c("aut", "cre"),
                    email = "yunro.chung@asu.edu")
as necessary.
Maintainer: ‘Oscar Alberto Quijano Xacur <oscar.quijano@use.startmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Oscar", "Alberto", "Quijano"),
                    family = "Xacur",
                    role = c("aut", "cre"),
                    email = "oscar.quijano@use.startmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chia-Wei Hsu <Chia-Wei.Hsu@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Wei",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "chia-wei.hsu@stjude.org"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"),
               person(given = "Rongji",
                      family = "Mu",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘formula_vs_matrix.Rmd’ using rmarkdown
--- finished re-building ‘formula_vs_matrix.Rmd’

--- re-building ‘unifiedml-benchmark.Rmd’ using rmarkdown

Quitting from unifiedml-benchmark.Rmd:12-42 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'caret'
---
Backtrace:
    ▆
 1. └─base::library(caret)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'unifiedml-benchmark.Rmd' failed with diagnostics:
there is no package called 'caret'
--- failed re-building ‘unifiedml-benchmark.Rmd’

--- re-building ‘unifiedml-caret.Rmd’ using rmarkdown

Quitting from unifiedml-caret.Rmd:19-33 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'caret'
---
Backtrace:
    ▆
 1. ├─Model$new(caret::train)
 2. │ └─unifiedml (local) initialize(...)
 3. │   └─base::stopifnot(is.function(model_fn))
 4. └─base::loadNamespace(x)
 5.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.     └─base (local) withOneRestart(expr, restarts[[1L]])
 7.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'unifiedml-caret.Rmd' failed with diagnostics:
there is no package called 'caret'
--- failed re-building ‘unifiedml-caret.Rmd’

--- re-building ‘unifiedml-predict-proba.Rmd’ using rmarkdown
--- finished re-building ‘unifiedml-predict-proba.Rmd’

--- re-building ‘unifiedml.Rmd’ using rmarkdown
--- finished re-building ‘unifiedml.Rmd’

SUMMARY: processing the following files failed:
  ‘unifiedml-benchmark.Rmd’ ‘unifiedml-caret.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpNovR9g/file30b6523fc4d8a2/seecol.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘color_functions.Rmd’ using rmarkdown
--- finished re-building ‘color_functions.Rmd’

--- re-building ‘color_recipes.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpRKRIOr/Rf30d7303465486d': No space left on device

Quitting from color_recipes.Rmd:198-217 [seecol-example-2a]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from color_recipes.Rmd:198-217 [seecol-example-2a]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'color_recipes.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘color_recipes.Rmd’

--- re-building ‘inst_colors.Rmd’ using rmarkdown
--- finished re-building ‘inst_colors.Rmd’

--- re-building ‘text_decorations.Rmd’ using rmarkdown
--- finished re-building ‘text_decorations.Rmd’

SUMMARY: processing the following file failed:
  ‘color_recipes.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'tidyverse', 'ggpubr', 'alakazam', 'gprofiler2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Claudia Koellmann <koellmann@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claudia",
                    family = "Koellmann",
                    role = c("aut", "cre"),
                    email = "koellmann@statistik.tu-dortmund.de")
as necessary.
Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takeshi",
                      family = "Emura",
                      role = c("aut", "cre"),
                      email = "takeshiemura@gmail.com"),
               person(given = "Wei-Chern",
                      family = "Hsu",
                      role = "aut"))
as necessary.
Maintainer: ‘Jonathan Berrisch <Jonathan@Berrisch.biz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Berrisch",
                    role = c("aut", "cre"),
                    email = "jonathan@berrisch.biz")
as necessary.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) simRedCard.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simRedCard.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpNwAypT/ltx32c48a1aede3d6/length-unitizerChanges-method.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Running massageExamples to create ‘unitquantreg-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpesJDyr/file3094553d0ae66a/vuong.test.R': No space left on device
Execution halted
 NONE
Maintainer: ‘David Navarro-Gonzalez <david.navarro@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pere", "Joan"),
                      family = "Ferrando",
                      role = "aut"),
               person(given = "David",
                      family = "Navarro-Gonzalez",
                      role = c("aut", "cre"),
                      email = "david.navarro@urv.cat"),
               person(given = "Urbano",
                      family = "Lorenzo-Seva",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpAhEmqk/ltx330e5249fc5b6/getFP-methods.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/unpivotr.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/unsum.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/unusualprofile.Rcheck/00install.out’ for details.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘available_version.R’
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘textclean’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: geraldine.henningsen@googlemail.com
    From: inst/doc/Manuscript.pdf
  URI: arne@ifro.ku.dk
    From: inst/doc/Manuscript.pdf
Error(s) in re-building vignettes:
  ...
--- re-building ‘ExtendedAppendix.Rnw’ using knitr
--- finished re-building ‘ExtendedAppendix.Rnw’

--- re-building ‘Manuscript.Rnw’ using knitr

Quitting from Manuscript.Rnw:158-160 [dataLoad]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
there is no package called 'sampleSelection'
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Manuscript.Rnw:158-160 [dataLoad]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Manuscript.Rnw:158-160 [dataLoad]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sampleSelection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Manuscript.Rnw:158-160 [dataLoad]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpwBMltT/RLIBS_306b9ae289219                    , /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Manuscript.Rnw' failed with diagnostics:
there is no package called 'sampleSelection'
--- failed re-building ‘Manuscript.Rnw’

SUMMARY: processing the following file failed:
  ‘Manuscript.Rnw’

Error: Vignette re-building failed.
Execution halted
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Frederick Liu <sliu85@u.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "sliu85@u.rochester.edu")
as necessary.
install log ‘’ does not exist
install log ‘’ does not exist
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘county_complete.Rd’ ‘fatal_police_shootings.Rd’ ‘gerrymander.Rd’
    ‘pierce_county_house_sales.Rd’ ‘pop_age_2019.Rd’ ‘pop_race_2019.Rd’
    ‘state_stats.Rd’ ‘us_temp.Rd’
cannot open the connection
problem found in ‘voter_count.Rd’
Maintainer: ‘Babak Naimi <naimi.b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babak",
                    family = "Naimi",
                    role = c("aut", "cre"),
                    email = "naimi.b@gmail.com")
as necessary.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
install log ‘’ does not exist
Packages required but not available: 'recipes', 'tune'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘usgas.Rd’
Running examples in ‘USgas-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: usgas
> ### Title: US Monthly Consumption of Natural Gas by End Use
> ### Aliases: usgas
> ### Keywords: datasets gas natural state timeseries us
> 
> ### ** Examples
> 
> 
> library(plotly)
Error in library(plotly) : there is no package called ‘plotly’
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown

Quitting from introduction.Rmd:78-92 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘USgrid-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Cal_elec
> ### Title: Demand for California Independent System Operator (CISO)
> ### Aliases: Cal_elec
> ### Keywords: datasets time-series
> 
> ### ** Examples
> 
> 
> data(Cal_elec)
> 
> library(plotly)
Error in library(plotly) : there is no package called ‘plotly’
Execution halted
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paula M. Murray <paula.murray@math.mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paula", "M."),
                      family = "Murray",
                      role = c("aut", "cre"),
                      email = "paula.murray@math.mcmaster.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas B. Berrett <tom.berrett@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "B."),
                      family = "Berrett",
                      role = c("aut", "cre"),
                      email = "tom.berrett@warwick.ac.uk"),
               person(given = "Ioannis",
                      family = "Kontoyiannis",
                      role = "aut",
                      email = "yiannis@maths.cam.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut",
                      email = "r.samworth@statslab.cam.ac.uk"))
as necessary.

The Description field contains
  <arXiv:2001.05513>, and shown to be minimax rate optimal in a wide
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Snigdhansu Chatterjee <chatt019@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Snigdhansu",
                    family = "Chatterjee",
                    role = c("aut", "cre"),
                    email = "chatt019@umn.edu")
as necessary.
install log ‘’ does not exist
Maintainer: ‘Matt Barry <mrb@softisms.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Barry",
                    role = c("aut", "cre"),
                    email = "mrb@softisms.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Antonio J. Segura <segura.antonioj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Antonio", "J."),
                    family = "Segura",
                    role = c("aut", "cre"),
                    email = "segura.antonioj@gmail.com")
as necessary.
Packages required but not available:
  'junco', 'teal', 'tern', 'teal.modules.clinical'

Packages suggested but not available for checking:
  'teal.modules.general', 'teal.transform'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_model.coxph.Rd’ ‘build_table.coxph.Rd’ ‘build_table.lm.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cusum_failure.Rd’ ‘cusum_loglike.Rd’ ‘cusum_ome.Rd’ ‘cusum_sprt.Rd’
    ‘paste.R’
install log ‘’ does not exist
Maintainer: ‘Ben Derrick <ben.derrick@uwe.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Derrick",
                    role = c("aut", "cre"),
                    email = "ben.derrick@uwe.ac.uk")
as necessary.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Emilio",
                      family = "Gallicchio",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
install log ‘’ does not exist
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'photobiology'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ron Sielinski <sielinski@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Sielinski",
                    role = c("aut", "cre"),
                    email = "sielinski@hotmail.com")
as necessary.
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: info@vaers.org
    From: README.md
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: info@vaers.org
    From: README.md
Maintainer: ‘Bruna Wundervald <brunadaviesw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruna",
                    family = "Wundervald",
                    role = c("aut", "cre"),
                    email = "brunadaviesw@gmail.com")
as necessary.
Package required but not available: ‘valdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sean Wen <sean.wenwx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sean",
                    family = "Wen",
                    role = c("aut", "cre"),
                    email = "sean.wenwx@gmail.com")
as necessary.
Packages required but not available: 'GenomicAlignments', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Christopher Belanger <christopher.a.belanger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Belanger",
                    role = c("aut", "cre"),
                    email = "christopher.a.belanger@gmail.com")
as necessary.
Package required but not available: ‘ggspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'janitor', 'framecleaner', 'badger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) sendTasks.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sendTasks.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
Error(s) in re-building vignettes:
  ...
--- re-building ‘cookbook.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpeyC70l/Rf3181926250b791': No space left on device

Quitting from cookbook.Rmd:909-911 [unnamed-chunk-60]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from cookbook.Rmd:909-911 [unnamed-chunk-60]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'cookbook.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘cookbook.Rmd’

--- re-building ‘JSS_3483.Rnw’ using Sweave
--- finished re-building ‘JSS_3483.Rnw’

SUMMARY: processing the following file failed:
  ‘cookbook.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpkDcxfG/file319afb3cdd85f3': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpkDcxfG/file319afb3cdd85f3': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Benjamin Hivert <benjamin.hivert@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Hivert",
                    role = c("aut", "cre"),
                    email = "benjamin.hivert@u-bordeaux.fr")
as necessary.

The Description field contains
  practical considerations", <arXiv:2210.13172>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Clay Ford <joe.clayton.ford@gmail.com>’

The Description field contains
  were downloaded from https://www.valottery.com/.
Please enclose URLs in angle brackets (<...>).
install log ‘’ does not exist
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
install log ‘’ does not exist
Packages required but not available: 'rstatix', 'ggpubr', 'DescTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error: inferior call failed
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘feature-access.Rmd’ using rmarkdown
--- finished re-building ‘feature-access.Rmd’

--- re-building ‘vapour.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmptEDOq9/Rf319ab51576a5f4': No space left on device

Quitting from vapour.Rmd:75-79 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from vapour.Rmd:75-79 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'vapour.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘vapour.Rmd’

SUMMARY: processing the following file failed:
  ‘vapour.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Guo Yu <gy63@cornell.edu>’

The Description field contains
  Bien (2016) and is available at <https://arxiv.org/abs/1604.07451>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sample_gen.Rd:18: Lost braces; missing escapes or markup?
    18 | Generate \code{n} random samples from multivariate Gaussian distribution N(0, (L^TL)^{-1})
       |                                                                                      ^
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpe6bhyR/file31916432a1dfb': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpe6bhyR/file31916432a1dfb': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Daniel Safai <danielsafai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Safai",
                    role = c("aut", "cre"),
                    email = "danielsafai@gmail.com")
as necessary.
Maintainer: ‘Piotr Sobczyk <pj.sobczyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Sobczyk",
                      role = c("aut", "cre"),
                      email = "pj.sobczyk@gmail.com"),
               person(given = "Stanislaw",
                      family = "Wilczynski",
                      role = "aut"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Malgorzata",
                      family = "Bogdan",
                      role = "aut"))
as necessary.
cannot open the connection
problem found in ‘var_srs.Rd’
Maintainer: ‘Wenlin Dai <wenlin.dai@kaust.edu.sa>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wenlin",
                      family = "Dai",
                      role = c("aut", "cre"),
                      email = "wenlin.dai@kaust.edu.sa"),
               person(given = "Tiejun",
                      family = "Tong.",
                      role = "aut",
                      email = "tongt@hkbu.edu.sa"))
as necessary.
checkRd: (-1) betaburr.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Burr distribution due to Parana\'{i}ba et al. (2011) given by
       |                                                                                                                        ^
checkRd: (-1) betafrechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Fr\'{e}chet distribution due to Barreto-Souza et al. (2011) given by
       |                                                                                           ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                      ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                                                      ^
checkRd: (-1) kumburr7.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Kumaraswamy Burr XII distribution due to Parana\'{i}ba et al. (2013) given by
       |                                                                                                                                   ^
Maintainer: ‘Sayanti Guha Majumdar <sayanti23gm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sayanti", "Guha"),
                      family = "Majumdar",
                      role = c("aut", "cre"),
                      email = "sayanti23gm@gmail.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae.", "H."),
                      family = "Kim",
                      role = "aut"),
               person(given = c("Jae", "H."),
                      family = "Kim",
                      role = "cre",
                      email = "jaekim8080@gmail.com"))
as necessary.
Checking relative paths failed with message:
  cannot open the connection
Checking relative paths failed with message:
  cannot open the connection
checkRd: (-1) simulateDCSIS.Rd:40: Lost braces
    40 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + exp(2*X22)*e
       |                                ^
checkRd: (-1) simulateDCSIS.Rd:42: Lost braces
    42 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + 6*X22 + e
       |                                ^
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Scott",
                      role = c("aut", "cre"),
                      email = "d.scott@auckland.ac.nz"),
               person(given = c("Christine", "Yang"),
                      family = "Dong",
                      role = "aut",
                      email = "c.dong@auckland.ac.nz"))
as necessary.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
install log ‘’ does not exist
Package required but not available: ‘randomForestSRC’

Package suggested but not available for checking: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michele Dalponte <michele.dalponte@fmach.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michele",
                      family = "Dalponte",
                      role = c("aut", "cre"),
                      email = "michele.dalponte@fmach.it"),
               person(given = c("Hans", "Ole"),
                      family = "Oerka",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSWbYyy/file3194a77654d651/B.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘lmeresampler’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
Fatal error: cannot create 'R_TempDir'
install log ‘’ does not exist
Maintainer: ‘Michael Salter-Townshend <mike.saltertownshend@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Salter-Townshend",
                    role = c("aut", "cre"),
                    email = "mike.saltertownshend@gmail.com")
as necessary.
Packages required but not available: 'ergm', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bo (Yu-Chien) Ning <bo.ning@upmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bo",
                      family = "Ning",
                      role = "aut",
                      comment = "Yu-Chien"),
               person(given = "Bo",
                      family = "Ning",
                      role = "cre",
                      email = "bo.ning@upmc.fr",
                      comment = "Yu-Chien"))
as necessary.

The Description field contains
  proposed by Ning (2020) <arXiv:2102.00305>. There are two algorithms:
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) decomposition.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |      ^
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |          ^
checkRd: (-1) moving.estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘vchartr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mark-line
> ### Title: Add an horizontal or vertical line to a chart
> ### Aliases: mark-line v_mark_vline v_mark_hline v_mark_segment
> 
> ### ** Examples
> 
> 
> library(vchartr)
> 
> # Vertical line
> vchart(meteo_paris) %>%
+   v_line(aes(month, temperature_avg)) %>%
+   v_mark_vline(x = "May")
> 
> # Vertical lines with labels
> vchart(meteo_paris) %>%
+   v_line(aes(month, temperature_avg)) %>%
+   v_mark_vline(
+     x = c("May", "September"),
+     .label.text = c("May", "September")
+   )
> 
> # Horizontal line
> vchart(meteo_paris) %>%
+   v_line(aes(month, temperature_avg)) %>%
+   v_mark_hline(y = 12)
> 
> # Both horizontal and vertical lines
> vchart(meteo_paris) %>%
+   v_line(aes(month, temperature_avg)) %>%
+   v_mark_vline(x = "May") %>%
+   v_mark_hline(y = 12)
> 
> # lines on a scatter plot
> vchart(cars) %>%
+   v_scatter(aes(speed, dist)) %>%
+   v_mark_vline(x = mean(cars$speed)) %>%
+   v_mark_hline(y = mean(cars$dist))
Warning in file.create(to[okay]) :
  cannot create file 'lib/vchart-binding-0.1.5/vchart.js', reason 'No space left on device'
Warning in base::file(file, open = "w+b") :
  cannot open file '/tmp/RtmpWvGMxp/viewhtml32aec0735d08fd/index.html': No space left on device
Error in base::file(file, open = "w+b") : cannot open the connection
Calls: <Anonymous> ... html_print -> save_html -> save_html.default -> <Anonymous>
Execution halted
Maintainer: ‘Michael Chirico <MichaelChirico4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Chirico",
                    role = c("aut", "cre"),
                    email = "michaelchirico4@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Anne Le Maitre <anne.le.maitre@univie.ac.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Tropheus.IK.coord.Rd’:
    https://doi.org/10.1038/hdy.2013.78
    https://doi.org/10.5061/dryad.fc02f
  File ‘Tropheus.Rd’:
    https://doi.org/10.5061/dryad.fc02f
    https://doi.org/10.1038/hdy.2013.78
  File ‘relative.eigen.Rd’:
    https://doi.org/10.1007/s11692-013-9260-5
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJMHCVL/file31906a20229b80/cov.B.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘vcvComp-worked-example.Rmd’ using rmarkdown

Quitting from vcvComp-worked-example.Rmd:45-54 [GPA]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'geomorph'
---
Backtrace:
    ▆
 1. └─base::library("geomorph")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'vcvComp-worked-example.Rmd' failed with diagnostics:
there is no package called 'geomorph'
--- failed re-building ‘vcvComp-worked-example.Rmd’

SUMMARY: processing the following file failed:
  ‘vcvComp-worked-example.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Cody Moore <Jumper9400@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cody",
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "jumper9400@gmail.com")
as necessary.
Package required but not available: ‘drc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Solveig Pospiech <s.pospiech@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Solveig",
                    family = "Pospiech",
                    role = c("aut", "cre"),
                    email = "s.pospiech@hzdr.de")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Yermanos <ayermanos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Yermanos",
                    role = c("aut", "cre"),
                    email = "ayermanos@gmail.com")
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Durazo-Arvizu",
                      role = "aut"),
               person(given = "Chris",
                      family = "Sempos",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu"))
as necessary.
Packages required but not available: 'ggpubr', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Tunc Oygur <info@tuncoygur.com.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tunc",
                      family = "Oygur",
                      role = c("aut", "cre"),
                      email = "info@tuncoygur.com.tr"),
               person(given = "Gazanfer",
                      family = "Unal",
                      role = "aut"),
               person(given = c("Tarik", "C."),
                      family = "Gouhier",
                      role = "ctb"),
               person(given = "Aslak",
                      family = "Grinsted",
                      role = "ctb"),
               person(given = "Viliam",
                      family = "Simko",
                      role = "ctb"))
as necessary.
Package required but not available: ‘fdasrvf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bob Rudis <bob@rudis.net>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpIMRaB5/Rf32b2e62a41335': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
install log ‘’ does not exist
Maintainer: ‘Robert Nuske <robert.nuske@mailbox.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrew A Zaffos <azaffos@email.arizona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrew", "A."),
                      family = "Zaffos",
                      role = "aut"),
               person(given = c("Andrew", "A"),
                      family = "Zaffos",
                      role = "cre",
                      email = "azaffos@email.arizona.edu"))
as necessary.
checkRd: (-1) additiveBeta.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:33: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'ggraph', 'tidygraph'

Package suggested but not available for checking: ‘BiocCheck’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lee",
                      family = "Wilkinson",
                      role = "aut",
                      email = "leland.wilkinson@gmail.com"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "cre",
                      email = "simon.urbanek@r-project.org"))
as necessary.
Maintainer: ‘Joon-Keat Lai <p10911004@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Javier Borja <javier@demografiando.pro>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/Rtmp7jS5gZ/Rf319bea70b15480': No space left on device
Package required but not available: ‘assertr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Conor Neilson <condwanaland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conor",
                    family = "Neilson",
                    role = c("aut", "cre"),
                    email = "condwanaland@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Golding",
                    role = c("aut", "cre"),
                    email = "nick.golding.research@gmail.com")
as necessary.
Maintainer: ‘Ryan Dickerson <fresh.tent5866@fastmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Rishabh Singh<rishabhsinghrsg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rishabh",
                    family = "Singh",
                    role = c("aut", "cre"),
                    email = "rishabhsinghrsg@gmail.com")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Javier Leiva Cuadrado <jleivacuadrado@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Javier", "Leiva"),
                    family = "Cuadrado",
                    role = c("aut", "cre"),
                    email = "jleivacuadrado@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/vetiver.Rcheck/00install.out’ for details.
Maintainer: ‘Dian Li <lidian@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Elze",
                      role = "aut"),
               person(given = "Dian",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lidian@zju.edu.cn",
                      comment = "documentation"),
               person(given = c("Eun", "Young"),
                      family = "Choi",
                      role = "aut",
                      comment = "QC"))
as necessary.
Maintainer: ‘Sarah Goslee <Sarah.Goslee@ars.usda.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/vhcub.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Adam T. Kocsis <adam.t.kocsis@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/adamkocsis/via
which should likely be
  https://github.com/adamkocsis/via/issues
instead.
checkRd: (-1) VirtualArray-single-bracket-method.Rd:6: Lost braces
     6 | \title{Indexing to extract subsets of a 'code{\link[via:XArray-class]{VirtualArray}}'-class object}
       |                                              ^
checkRd: (-1) subset.Rd:20: Lost braces
    20 | \item{drop}{\code{logical} in case the result of subsetting is a single element, should the \\code{\link[via:XArray-class]{VirtualArray}} wrapper be dropped?}
       |                                                                                                   ^
Running massageExamples to create ‘vibass-Ex.R’ failed
checkRd: (-1) vic_param.Rd:311: Lost braces
   311 | albedo must be supplied in code{forcing_veg}. Default = 1.}
       |                                ^
checkRd: (-1) vic_param.Rd:323: Lost braces
   323 | supplied in code{forcing_veg}. Default = 1.}
       |                 ^
checkRd: (-1) vic_param.Rd:341: Lost braces
   341 | be supplied in code{forcing_veg} Default = 0.}
       |                    ^
Package required but not available: ‘klaR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [3s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(videogameinsightsR)
  > 
  > test_check("videogameinsightsR")
  Saving _problems/test-utils-28.R
  [ FAIL 1 | WARN 17 | SKIP 11 | PASS 125 ]
  
  ══ Skipped tests (11) ══════════════════════════════════════════════════════════
  • VGI_AUTH_TOKEN not set (8): 'test-api-responses.R:68:3',
    'test-data-processing.R:77:3', 'test-game-comparison.R:5:3',
    'test-game-comparison.R:20:3', 'test-game-comparison.R:32:3',
    'test-game-comparison.R:57:3', 'test-game-comparison.R:216:3',
    'test-game-comparison.R:232:3'
  • empty test (3): 'test-api-responses.R:4:1', 'test-data-processing.R:39:1',
    'test-data-processing.R:61:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-utils.R:28:3'): validate_platform works correctly ──────────────
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─testthat::expect_silent(validate_platform("steam")) at test-utils.R:28:3
   2.   └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   3.     └─testthat (local) .capture(...)
   4.       └─withr::with_output_sink(...)
   5.         └─withr:::set_output_sink(file = new, append = append, split = split)
   6.           └─withr:::output_sink(file = file, append = append, split = split)
   7.             └─base::sink(file = file, append = append, type = "output", split = split)
   8.               └─base::file(file, if (append) "a" else "w")
  
  [ FAIL 1 | WARN 17 | SKIP 11 | PASS 125 ]
  Error:
  ! Test failures.
  Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpTqAoiM/Rf32b3ef76bb663d': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
checkRd: (-1) vietnamcode.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:16: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'ggpubr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/vigicaen.Rcheck/00install.out’ for details.
Maintainer: ‘Joseph de Vilmarest <joseph.de-vilmarest@vikingconseil.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "de Vilmarest",
                    role = c("aut", "cre"),
                    email = "joseph.de-vilmarest@vikingconseil.fr",
                    comment = c(ORCID = "0000-0002-0634-8484"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘example-boltzman-wealth.Rmd’ using rmarkdown
--- finished re-building ‘example-boltzman-wealth.Rmd’

--- re-building ‘extending-agents.Rmd’ using rmarkdown
--- finished re-building ‘extending-agents.Rmd’

--- re-building ‘extending-resources.Rmd’ using rmarkdown

Quitting from extending-resources.Rmd:17-20 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'extending-resources.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘extending-resources.Rmd’

SUMMARY: processing the following file failed:
  ‘extending-resources.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Zhicheng Du <dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhicheng",
                    family = "Du",
                    role = c("aut", "cre"),
                    email = "dgdzc@hotmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘abalone-example.Rmd’ using rmarkdown

Quitting from abalone-example.Rmd:46-56 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'AppliedPredictiveModeling'
---
Backtrace:
    ▆
 1. └─utils::data(abalone, package = "AppliedPredictiveModeling")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'abalone-example.Rmd' failed with diagnostics:
there is no package called 'AppliedPredictiveModeling'
--- failed re-building ‘abalone-example.Rmd’

--- re-building ‘bike-rental.Rmd’ using rmarkdown
--- finished re-building ‘bike-rental.Rmd’

SUMMARY: processing the following file failed:
  ‘abalone-example.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jefferson Paril <jeffersonparil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jefferson",
                    family = "Paril",
                    role = c("aut", "cre"),
                    email = "jeffersonparil@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Scott Sherrill-Mix <ssm@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Scott",
                      family = "Sherrill-Mix",
                      role = c("aut", "cre"),
                      email = "ssm@msu.edu"),
               person(given = "Erik",
                      family = "Clarke",
                      role = "aut"))
as necessary.
Unknown package ‘fastshap’ in Rd xrefs
Packages required but not available: 'parsnip', 'recipes', 'workflows'

Packages suggested but not available for checking: 'rsample', 'rules'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/virtualPollen.Rcheck/00install.out’ for details.
Package required but not available: ‘HMDHFDplus’

Package suggested but not available for checking: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpfodrOe/file3311106340b0e6/get_behaviour_evtx.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/visae.Rcheck/00install.out’ for details.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘VisCollin-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: biomass
> ### Title: Biomass Production in the Cape Fear Estuary
> ### Aliases: biomass
> ### Keywords: dataset
> 
> ### ** Examples
> 
> data(biomass)
> str(biomass)
'data.frame':	45 obs. of  17 variables:
 $ loc    : Factor w/ 3 levels "OI","SI","SM": 1 1 1 1 1 1 1 1 1 1 ...
 $ type   : Factor w/ 3 levels "DVEG","SHRT",..: 1 1 1 1 1 2 2 2 2 2 ...
 $ biomass: int  676 516 1052 868 1008 436 544 680 640 492 ...
 $ H2S    : int  -610 -570 -610 -560 -610 -620 -590 -610 -580 -610 ...
 $ sal    : int  33 35 32 30 33 33 36 30 38 30 ...
 $ Eh7    : int  -290 -268 -282 -232 -318 -308 -264 -340 -252 -288 ...
 $ pH     : num  5 4.75 4.2 4.4 5.55 5.05 4.25 4.45 4.75 4.6 ...
 $ buf    : num  2.34 2.66 4.18 3.6 1.9 3.22 4.5 3.5 2.62 3.04 ...
 $ P      : num  20.2 15.6 18.7 22.8 37.8 ...
 $ K      : num  1442 1299 1154 1045 522 ...
 $ Ca     : num  2150 1845 1750 1674 3360 ...
 $ Mg     : num  5169 4358 4041 3966 4609 ...
 $ Na     : num  35184 28170 26455 25073 31664 ...
 $ Mn     : num  14.29 7.73 17.81 49.15 30.52 ...
 $ Zn     : num  16.5 14 15.3 17.3 22.3 ...
 $ Cu     : num  5.02 4.19 4.79 4.09 4.6 ...
 $ NH4    : num  59.5 51.4 68.8 82.3 70.9 ...
> biomass.mod <- lm (biomass ~ H2S + sal + Eh7 + pH + buf + P + K + Ca + Mg + Na +
+                            Mn + Zn + Cu + NH4,
+                  data=biomass)
> car::vif(biomass.mod)
Error in loadNamespace(x) : there is no package called ‘car’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Packages required but not available: 'Hmisc', 'netmeta', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘trialr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicholas Tierney <nicholas.tierney@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ViSe.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘select_knots.Rmd’ using rmarkdown
--- finished re-building ‘select_knots.Rmd’

--- re-building ‘vismeteor.Rmd’ using rmarkdown
--- finished re-building ‘vismeteor.Rmd’

sh: 1: cannot create /tmp/RtmpWUKriy/file3364ea7e3ad74d: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpWUKriy/file3364ea7e3ad74d': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: <Anonymous> -> cat -> readLines -> file
Execution halted
Packages required but not available:
  'GGally', 'mixgb', 'plotly', 'trelliscopejs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmphgBqdP/Rf33110118e4313f': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Running massageExamples to create ‘visNetwork-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp2PcBP6/file332826542eb50b/visRedraw.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpFTCrrj/ltx33394777b7d1f1/visLayout.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘omopgenerics’

Packages suggested but not available for checking:
  'CohortCharacteristics', 'flextable', 'ggalluvial',
  'IncidencePrevalence', 'officer', 'PatientProfiles', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sheng Luan <luansheng@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘highcharter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Ponce",
                    role = c("aut", "cre"),
                    email = "m.ponce@utoronto.ca")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/visvow.Rcheck/00install.out’ for details.
Package required but not available: ‘dunn.test’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David J. Sharrow <dsharrow@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregor",
                      family = "Passolt",
                      role = "aut"),
               person(given = c("James", "J."),
                      family = "Anderson",
                      role = "aut"),
               person(given = "Ting",
                      family = "Li",
                      role = "aut"),
               person(given = c("David", "H."),
                      family = "Salinger",
                      role = "aut"),
               person(given = c("David", "J."),
                      family = "Sharrow",
                      role = c("aut", "cre"),
                      email = "dsharrow@uw.edu"))
as necessary.
Package required but not available: ‘HMDHFDplus’

Package suggested but not available for checking: ‘demography’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/vitals.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/vivaglint.Rcheck/00install.out’ for details.
Packages required but not available: 'wpa', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

Packages suggested but not available for checking:
  'sna', 'tidymodels', 'caret', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘compact_letter_displays.Rmd’ using rmarkdown

Quitting from compact_letter_displays.Rmd:82-86 [chick-letter]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'psre'
---
Backtrace:
    ▆
 1. └─base::library(psre)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'compact_letter_displays.Rmd' failed with diagnostics:
there is no package called 'psre'
--- failed re-building ‘compact_letter_displays.Rmd’

--- re-building ‘creating_forest_plots.Rmd’ using rmarkdown
--- finished re-building ‘creating_forest_plots.Rmd’

--- re-building ‘heatmaps.Rmd’ using rmarkdown
[WARNING] Citeproc: citation factorplot not found
--- finished re-building ‘heatmaps.Rmd’

--- re-building ‘sig_diffs_explanation.Rmd’ using rmarkdown
--- finished re-building ‘sig_diffs_explanation.Rmd’

--- re-building ‘significance_brackets.Rmd’ using rmarkdown
--- finished re-building ‘significance_brackets.Rmd’

SUMMARY: processing the following file failed:
  ‘compact_letter_displays.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp0uW2bc/ltx334987392f6c5e/get_stop_words.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
install log ‘’ does not exist
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
‘gs+qpdf’ made some significant size reductions:
     compacted ‘vmrPoster.pdf’ from 828Kb to 2Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/vmsae.Rcheck/00install.out’ for details.
Package required but not available: ‘oeli’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) getTurnType.Rd:38: Lost braces; missing escapes or markup?
    38 | Return one of {Vocalisation, GrpVocalisation, ...} or identifier.
       |               ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/voice.Rcheck/00install.out’ for details.
Packages required but not available:
  'FSA', 'ggpubr', 'phia', 'plotly', 'rcompanion'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'ggpubr'

Package suggested but not available for checking: ‘easylabel’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'heplots'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bryan Gertzel <bryan.gertzel@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bryan",
                      family = "Gertzel",
                      role = c("aut", "cre"),
                      email = "bryan.gertzel@anu.edu.au"),
               person(given = "Robert",
                      family = "Ackland",
                      role = "aut"))
as necessary.
install log ‘’ does not exist
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/votesmart.Rcheck/00install.out’ for details.
Maintainer: ‘Michael Gampmayer <michael.gampmayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Gampmayer",
                    role = c("aut", "cre"),
                    email = "michael.gampmayer@gmail.com")
as necessary.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "H."),
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jaekim8080@gmail.com")
as necessary.
Maintainer: ‘Philippe Regnault <philipperegnault@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justine",
                      family = "Lequesne",
                      role = "aut"),
               person(given = "Philippe",
                      family = "Regnault",
                      role = c("aut", "cre"),
                      email = "philipperegnault@hotmail.com"))
as necessary.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/VSOLassoBag.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/vsp.Rcheck/00install.out’ for details.
Maintainer: ‘Karolina Klockmann <karolina.klockmann@gmx.de>’

The Description field contains
  (Klockmann, Krivobokova; 2023), <arXiv:2303.10018>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) Data-Examples.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aquaporin.Rd:10: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmppZolzD/ltx36dc0340ccd092/mkCrossFrameMExperiment.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andreas",
                      family = "Schulz",
                      role = "cre",
                      email = "ades-s@web.de"),
               person(family = "PhD",
                      role = c("aut", "cre")))
as necessary.
Maintainer: ‘Csaba Farago <farago@inf.u-szeged.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Csaba",
                    family = "Farago",
                    role = c("aut", "cre"),
                    email = "farago@inf.u-szeged.hu")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'datamods', 'DescTools', 'exact2x2', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Converting parsed Rd's to LaTeX ......Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpPFf1XV/ltx3411436a065236/update_group.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
cannot open the connection
problem found in ‘height.Rd’
Maintainer: ‘Hadley Wickham <hadley@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/walkboutr.Rcheck/00install.out’ for details.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Whalen <whalenjf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Whalen",
                    role = c("aut", "cre"),
                    email = "whalenjf@gmail.com")
as necessary.
Maintainer: ‘Mary E. Blair <mblair1@amnh.org>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available:
  'ecospat', 'ENMeval', 'leafem', 'spocc'

Packages suggested but not available for checking:
  'mapview', 'occCite', 'rangeModelMetadata'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul F. Blanche <paulfblanche@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "F"),
                      family = "Blanche",
                      role = "aut",
                      email = "paulfblanche@gmail.com"),
               person(given = c("Thomas", "A."),
                      family = "Gerds",
                      role = "aut",
                      email = "tag@biostat.ku.dk"),
               person(given = c("Paul", "F."),
                      family = "Blanche",
                      role = "cre",
                      email = "paulfblanche@gmail.com"))
as necessary.
Package required but not available: ‘riskRegression’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jonathon Love <jon@thon.cc>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathon",
                      family = "Love",
                      role = c("aut", "cre"),
                      email = "jon@thon.cc"),
               person(given = "Patrick",
                      family = "Mair",
                      role = "aut"))
as necessary.
Running examples in ‘WALS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: controlGLM
> ### Title: Control function for initial GLM fit
> ### Aliases: controlGLM
> 
> ### ** Examples
> 
> data("HMDA", package = "AER")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘AER’
Calls: data -> find.package
Execution halted
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Harvinder Singh <harvindermaan4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Harvinder",
                    family = "Singh",
                    role = c("aut", "cre"),
                    email = "harvindermaan4@gmail.com")
as necessary.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘warbleR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spectrograms
> ### Title: Spectrograms of selected signals
> ### Aliases: spectrograms
> 
> ### ** Examples
> 
> {
+   # load and save data
+   data(list = c("Phae.long1", "Phae.long2", "lbh_selec_table"))
+   writeWave(Phae.long1, file.path(tempdir(), "Phae.long1.wav")) # save sound files
+   writeWave(Phae.long2, file.path(tempdir(), "Phae.long2.wav"))
+ 
+   # make spectrograms
+   spectrograms(
+     X = lbh_selec_table, flim = c(0, 11), res = 300, mar = 0.05,
+     wl = 300, path = tempdir()
+   )
+ 
+   # check this folder
+   tempdir()
+ }
Error in plot.new() : 
  could not open file '/tmp/Rtmp06TuTG/Phae.long1.wav-1.jpeg'
Calls: spectrograms ... spectro_wrblr_int -> filled_contour_wrblr_int -> plot.new
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpXXVlnH/ltx373edb74760115/cross_correlation.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/WAreg.Rcheck/00install.out’ for details.
Packages required but not available: 'caret', 'lexicon', 'sentimentr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrea Venturini <andrea.venturini@bancaditalia.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "andrea.venturini@bancaditalia.it")
as necessary.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/washr.Rcheck/00install.out’ for details.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Stewart <michael.stewart@sydney.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Raimondo",
                      role = "aut",
                      email = "marcr@maths.usyd.edu.au"),
               person(given = "Michael",
                      family = "Stewart",
                      role = c("aut", "cre"),
                      email = "michael.stewart@sydney.edu.au"))
as necessary.
Package required but not available: ‘caretForecast’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "ranjitstat@gmail.com"),
               person(given = "Sandipan",
                      family = "Samanta",
                      role = "aut"),
               person(given = "Ankit",
                      family = "Tanwar",
                      role = "aut"))
as necessary.
Packages required but not available: 'caret', 'caretForecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'caretForecast'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'caretForecast', 'TSLSTM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'WaveletML', 'CEEMDANML', 'DescribeDF'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Eric Aldrich <ealdrich@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eric",
                    family = "Aldrich",
                    role = c("aut", "cre"),
                    email = "ealdrich@gmail.com")
as necessary.
install log ‘’ does not exist
Packages required but not available: 'DescTools', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'spectacles'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Rd conversion errors:
Converting parsed Rd's to LaTeX .............Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphWWGP5/ltx36b49c291c65ea/linfnorm.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Vicente J. Bolos <vicente.bolos@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vicente", "J."),
                      family = "Bolos",
                      role = c("aut", "cre"),
                      email = "vicente.bolos@uv.es"),
               person(given = "Rafael",
                      family = "Benitez",
                      role = "aut"))
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Pablo Rodríguez-Sánchez <pablo.rodriguez.sanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pablo",
                    family = "Rodríguez-Sánchez",
                    role = c("aut", "cre"),
                    email = "pablo.rodriguez.sanchez@gmail.com")
as necessary.
Package required but not available: ‘DescTools’

Packages suggested but not available for checking:
  'AnnotationDbi', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karolos Korkas <kkorkas@yahoo.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karolos",
                      family = "Korkas",
                      role = c("aut", "cre"),
                      email = "kkorkas@yahoo.co.uk"),
               person(given = "Piotr",
                      family = "Fryzlewicz",
                      role = "aut"))
as necessary.
Running examples in ‘wcde-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: edu_group_sum
> ### Title: Education group sums
> ### Aliases: edu_group_sum
> 
> ### ** Examples
> 
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘wcde.Rmd’ using rmarkdown

Quitting from wcde.Rmd:76-85 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wcde.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘wcde.Rmd’

SUMMARY: processing the following file failed:
  ‘wcde.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ujjwal Singh <ujjwalrsmt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ujjwal", "Singh", "Prashant", "K", "Srivastava", "<prashant.just@gmail.com)>", "Dharmendra", "Kumar", "Pandey", "<Dkp@sac.isro.gov.in>", "Sumit", "Kumar", "Chaudhary", "<sumit.mathe@gmail.com>", "Dileep", "Kumar", "Gupta"),
                      family = "<dileepgupta85@gmail.com>",
                      role = "aut",
                      email = "dileepgupta85@gmail.com"),
               person(given = "Ujjwal",
                      family = "Singh",
                      role = "cre",
                      email = "ujjwalrsmt@gmail.com"))
as necessary.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘wCorrArguments.Rmd’ using rmarkdown
--- finished re-building ‘wCorrArguments.Rmd’

--- re-building ‘wCorrFormulas.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'doBy''

Quitting from wCorrFormulas.Rmd:14-29 [packages and data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Cannot build vignette without knitr package
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wCorrFormulas.Rmd' failed with diagnostics:
Cannot build vignette without knitr package
--- failed re-building ‘wCorrFormulas.Rmd’

SUMMARY: processing the following file failed:
  ‘wCorrFormulas.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/wcvpmatch.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/wdiexplorer.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/wdnr.gis.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Brooke Anderson <brooke.anderson@colostate.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'tidyverse', 'sentimentr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ariya",
                      family = "Hidayat",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Gabor",
                      family = "Torok",
                      role = "aut"),
               person(given = "Ivan",
                      family = "De Marino",
                      role = "aut"),
               person(given = "Robert",
                      family = "Gieseke",
                      role = "aut"),
               person(given = "Steven",
                      family = "Masala",
                      role = "aut"),
               person(given = "Winston",
                      family = "Chang",
                      role = "aut"),
               person(given = "Zack",
                      family = "Weinberg",
                      role = "aut"))
as necessary.
checkRd: (-1) Session.Rd:146: Lost braces
   146 | sQuote{page load} timeout specifies a time to wait for the page loading
       |       ^
Maintainer: ‘Richard Barnes <rijard.barnes@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/r-barnes/webglobe/
which should likely be
  https://github.com/r-barnes/webglobe/issues
instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/webglobe.Rcheck/00install.out’ for details.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Packages required but not available:
  'moonBook', 'flextable', 'rrtable', 'ztable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'GGally', 'brms', 'broom.mixed', 'jtools', 'rstanarm'

Package suggested but not available for checking: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Winston Chang [aut, cre], Barret Schloerke [ctb] (<https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Winston Chang [aut, cre], Barret Schloerke [ctb] (ORCID: <https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Jodi Beggs <jodi@alum.mit.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rense Nieuwenhuis <rense.nieuwenhuis@sofi.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rense",
                      family = "Nieuwenhuis",
                      role = c("aut", "cre"),
                      email = "rense.nieuwenhuis@sofi.su.se"),
               person(given = c("Manfred", "te"),
                      family = "Grotenhuis",
                      role = "aut"),
               person(given = "Ben",
                      family = "Pelzer",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Ruben",
                      family = "Konig",
                      role = "aut"),
               person(given = "Rob",
                      family = "Eisinga",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) busTrace.Rd:15: Lost braces
    15 | /href{https://crawdad.org/coppe-ufrj/RioBuses/20180319/}
       |      ^
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part
cannot open the connection
problem found in ‘coef.werm_fit.Rd’
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup?
    10 | integer/numeric with values all in {0=negative,1=positive} or
       |                                    ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       | ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       |                            ^
Maintainer: ‘Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>’

The Description field contains
  <arXiv:1510.07376>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) CLIC.Rd:149: Lost braces
   149 | Composite likelihood {E}{M} algorithm with applications to
       |                         ^
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5y7Obo/file3684ad78fb7963/wtsc.wrapper.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘weightedsurv_examples.Rmd’ using rmarkdown

Quitting from weightedsurv_examples.Rmd:70-110 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'DiagrammeR'
---
Backtrace:
    ▆
 1. └─base::library(DiagrammeR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'weightedsurv_examples.Rmd' failed with diagnostics:
there is no package called 'DiagrammeR'
--- failed re-building ‘weightedsurv_examples.Rmd’

SUMMARY: processing the following file failed:
  ‘weightedsurv_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Viviane Philipps <Viviane.Philipps@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Viviane",
                    family = "Philipps",
                    role = c("aut", "cre"),
                    email = "viviane.philipps@u-bordeaux.fr")
as necessary.
Packages required but not available: 'Hmisc', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tianchen Xu <tx2155@columbia.edu>’

Found the following (possibly) invalid file URI:
  URI: tx2155@columbia.edu
    From: inst/doc/wsvmdoc.pdf
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/weird.Rcheck/00install.out’ for details.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Han Yu <hyu9@buffalo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "hyu9@buffalo.edu"),
               person(given = c("Rachael", "Hageman"),
                      family = "Blair",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘whaleMeasurements.Rd’, ‘whaleShape.Rd’, ‘whaleSkinForce.Rd’, ‘whaleWaterForce.Rd’, ‘whalestrike.Rd’
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘coords_from_words.R’ ‘get_available_languages.R’
    ‘words_from_coords.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_characteristics.Rd’ ‘define_instances.Rd’ ‘export.R’
    ‘generate_table.Rd’ ‘get_attribute_definition_function.Rd’
    ‘get_day_part.Rd’ ‘get_level_attribute_names.Rd’ ‘get_level_names.Rd’
    ‘get_table.Rd’ ‘get_table_attribute_names.Rd’ ‘get_table_csv.Rd’
    ‘get_table_rdb.Rd’ ‘get_table_xlsx.Rd’ ‘select_date_levels.Rd’
    ‘select_day_level.Rd’ ‘select_month_level.Rd’
    ‘select_quarter_level.Rd’ ‘select_semester_level.Rd’
    ‘select_time_level.Rd’ ‘select_week_level.Rd’ ‘select_year_level.Rd’
    ‘set_attribute_definition_function.Rd’ ‘set_day_part.Rd’
    ‘set_table_attribute_names.Rd’ ‘week.R’
Running examples in ‘when-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_table_rdb
> ### Title: Store the table in a relational database
> ### Aliases: get_table_rdb get_table_rdb.when
> 
> ### ** Examples
> 
> 
> my_db <- DBI::dbConnect(RSQLite::SQLite())
> 
> when() |>
+   generate_table() |>
+   get_table_rdb(my_db)
! Package igraph is not installed. dm will use a pure R fallback.
ℹ Install igraph for better performance: `install.packages("igraph")`
ℹ Set `options(dm.use_igraph = FALSE)` to suppress this message.
Error in (function (packages, top_level_fun, use = TRUE)  : 
  The package "dbplyr" is required to use `copy_dm_to()`.
Calls: get_table_rdb ... withVisible -> eval -> eval -> <Anonymous> -> check_installed
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘when.Rmd’ using rmarkdown

Quitting from when.Rmd:378-390 [database]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error:
! The package "dbplyr" is required to use `copy_dm_to()`.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'when.Rmd' failed with diagnostics:
The package "dbplyr" is required to use `copy_dm_to()`.
--- failed re-building ‘when.Rmd’

SUMMARY: processing the following file failed:
  ‘when.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/whippr.Rcheck/00install.out’ for details.
Maintainer: ‘Edwin de Jonge <edwindjonge@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edwin",
                    family = "de Jonge",
                    role = c("aut", "cre"),
                    email = "edwindjonge@gmail.com")
as necessary.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Korbinian",
                      family = "Strimmer",
                      role = c("aut", "cre"),
                      email = "strimmerlab@gmail.com"),
               person(given = "Takoua",
                      family = "Jendoubi",
                      role = "aut"),
               person(given = "Agnan",
                      family = "Kessy",
                      role = "aut"),
               person(given = "Alex",
                      family = "Lewin",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Jorge Lopez Perez <jorge@loperez.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘dataRetrieval’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lindsay Lee <lindsayevanslee@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpECJ7De/Rf36e0211e17bc74': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Bhaskar Karambelkar <bhaskarvk@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: rmarkdown.rstudio.com
    From: inst/doc/Using_widgetframe.html
  URI: yihui.name/knitr/
    From: inst/doc/Using_widgetframe.html
Maintainer: ‘Joerg grosse Schlarmann (aka Produnis) <schlarmann@produnis.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joerg", "grosse"),
                    family = "Schlarmann",
                    role = c("aut", "cre"),
                    email = "schlarmann@produnis.de",
                    comment = "aka Produnis")
as necessary.
checkRd: (-1) milakes.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Brock",
                      family = "Tilbert",
                      role = "ctb"),
               person(given = "Clemens",
                      family = "Schmid",
                      role = "aut"))
as necessary.
Package required but not available: ‘netCoin’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Bradley Shanrock-Solberg <greblosb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bradley",
                    family = "Shanrock-Solberg",
                    role = c("aut", "cre"),
                    email = "greblosb@gmail.com")
as necessary.
Checking relative paths failed with message:
  cannot open the connection
Packages required but not available:
  'plotly', 'FactoMineR', 'factoextra', 'heatmaply'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  cannot open the connection
Running massageExamples to create ‘winch-Ex.R’ failed
Maintainer: ‘Neeraj Bokde <neerajdhanraj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neeraj",
                      family = "Bokde",
                      role = c("aut", "cre"),
                      email = "neerajdhanraj@gmail.com"),
               person(given = "Andres",
                      family = "Feijoo",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Novica Nakov <nnovica@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/windsor-ai/windsoraiR/
which should likely be
  https://github.com/windsor-ai/windsoraiR/issues
instead.
Maintainer: ‘Kevin Duarte <k.duarte@chru-nancy.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Duarte",
                      role = c("aut", "cre"),
                      email = "k.duarte@chru-nancy.fr"),
               person(given = c("Joao", "Pedro"),
                      family = "Ferreira",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘WinRatio-package.Rd’:
    https://doi.org/10.1093/eurheartj/ehr352
    https://doi.org/10.1093/biostatistics/kxv032
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mc2d', 'imputeTS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Robert W. Cort <rcorty@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "W."),
                    family = "Cort",
                    role = c("aut", "cre"),
                    email = "rcorty@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp7PJJCX/Rf3740ec2c0645be': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ian Cook <ianmcook@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("TIBCO", "Software"),
                      family = "Inc.",
                      role = "aut"),
               person(given = "Ian",
                      family = "Cook",
                      role = "cre",
                      email = "ianmcook@gmail.com"))
as necessary.
Maintainer: ‘Wencan Zhu <wencan.zhu@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wencan",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "wencan.zhu@yahoo.com")
as necessary.
Package required but not available: ‘cvCovEst’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ilana Trumble <ilana.trumble@cuanschutz.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ilana",
                      family = "Trumble",
                      role = c("aut", "cre"),
                      email = "ilana.trumble@cuanschutz.edu"),
               person(given = "Orlando",
                      family = "Ferrer",
                      role = "aut"),
               person(given = "Camden",
                      family = "Bay",
                      role = "aut"),
               person(given = "Katie",
                      family = "Mollan",
                      role = "aut"))
as necessary.

The Description field contains
  <doi:10.1080/10543406.2020.1730866> <arXiv:1901.04597>, (Mann and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Shahla Faisal <shahla_ramzan@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shahla",
                    family = "Faisal",
                    role = c("aut", "cre"),
                    email = "shahla_ramzan@yahoo.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpz01HRp/Rf33aa2a6d8f7477': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpMUw0Qw/Rf33ab144c3e9a27': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Maintainer: ‘Jeffrey B. Lewis <jblewis@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Keith",
                      family = "Poole",
                      role = "aut",
                      email = "ktpoole@uga.edu"),
               person(given = "Jeffrey",
                      family = "Lewis",
                      role = "aut",
                      email = "jblewis@ucla.edu"),
               person(given = "James",
                      family = "Lo",
                      role = "aut",
                      email = "lojames@usc.edu"),
               person(given = "Royce",
                      family = "Carroll",
                      role = "aut",
                      email = "rcarroll@rice.edu"),
               person(given = c("Jeffrey", "B."),
                      family = "Lewis",
                      role = "cre",
                      email = "jblewis@ucla.edu"))
as necessary.
Maintainer: ‘Thilo Eichenberg <te.r@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thilo",
                    family = "Eichenberg",
                    role = c("aut", "cre"),
                    email = "te.r@gmx.net")
as necessary.
Maintainer: ‘Sudarson Mothilal Thoppay <sudarson@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sudarson", "Mothilal"),
                    family = "Thoppay",
                    role = c("aut", "cre"),
                    email = "sudarson@outlook.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introductory-Econometrics-Examples.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpqTXEbN/Rf38cc0f6f8ac787': No space left on device

Quitting from Introductory-Econometrics-Examples.Rmd:289-291 [unnamed-chunk-26]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Introductory-Econometrics-Examples.Rmd:289-291 [unnamed-chunk-26]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Introductory-Econometrics-Examples.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Introductory-Econometrics-Examples.Rmd’

SUMMARY: processing the following file failed:
  ‘Introductory-Econometrics-Examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Dawei Lang <chiffonlang@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dawei",
                      family = "Lang",
                      role = c("aut", "cre"),
                      email = "chiffonlang@icloud.com"),
               person(given = "Guan-tin",
                      family = "Chien",
                      role = "aut"))
as necessary.
Running examples in ‘wordcloud2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: letterCloud
> ### Title: Create wordcloud with the shape of a word
> ### Aliases: letterCloud
> 
> ### ** Examples
> 
> library(wordcloud2)
> 
> letterCloud(demoFreq,"R")
Warning in file.create(to[okay]) :
  cannot create file 'lib/htmltools-fill-0.5.9/fill.css', reason 'No space left on device'
Warning in file.create(to[okay]) :
  cannot create file 'lib/htmlwidgets-1.6.4/htmlwidgets.js', reason 'No space left on device'
Warning in dir.create(target_dir) :
  cannot create dir 'lib/wordcloud2-0.0.1', reason 'No space left on device'
Error in normalizePath(target_dir, "/", TRUE) : 
  path[1]="lib/wordcloud2-0.0.1": No such file or directory
Calls: <Anonymous> ... lapply -> FUN -> copyDependencyToDir -> normalizePath
Execution halted
Maintainer: ‘Ian Fellows <ian@fellstat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ian",
                    family = "Fellows",
                    role = c("aut", "cre"),
                    email = "ian@fellstat.com")
as necessary.
Maintainer: ‘Jonathan Bratt <jonathan.bratt@macmillan.com>’

The Description field contains
  Apply 'Wordpiece' (<arXiv:1609.08144>) tokenization to input text,
  given an appropriate vocabulary. The 'BERT' (<arXiv:1810.04805>)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) wordpiece_cache_dir.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:20-21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TWP.Rd’
Running massageExamples to create ‘wordPuzzleR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpsC9Ko4/file37d64562516e58', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpsC9Ko4/file37d64562516e58/config_game.R': No such file or directory
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Tomas Hovorka <tomashovorka@seznam.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Hovorka",
                    role = c("aut", "cre"),
                    email = "tomashovorka@seznam.cz")
as necessary.
Packages required but not available: 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'parsnip', 'rsample', 'tune', 'workflows'

Packages suggested but not available for checking:
  'finetune', 'recipes', 'tidyclust'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'parsnip', 'recipes'

Package suggested but not available for checking: ‘probably’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GGally', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tourr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      email = "gerland@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      email = "gerland@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu",
                      comment = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      comment = "gerland@un.org"),
               person(given = "Kirill",
                      family = "Andreev",
                      role = "aut",
                      comment = "andreev@un.org"),
               person(given = "Nan",
                      family = "Li",
                      role = "aut",
                      comment = "li32@un.org"),
               person(given = "Danan",
                      family = "Gu",
                      role = "aut",
                      comment = "gud@un.org"),
               person(given = "Thomas",
                      family = "Spoorenberg",
                      role = "aut",
                      comment = "spoorenberg@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("United", "Nations", "Population"),
                      family = "Division",
                      role = "aut"),
               person(given = "Hana",
                      family = "Sevcikova",
                      role = "cre",
                      email = "hanas@uw.edu"))
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("United", "Nations", "Population"),
                      family = "Division",
                      role = "aut"),
               person(given = "Hana",
                      family = "Sevcikova",
                      role = "cre",
                      email = "hanas@uw.edu"))
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hana",
                    family = "Sevcikova",
                    role = c("aut", "cre"),
                    email = "hanas@uw.edu")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gWQS', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Packages required but not available: 'DescTools', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpogwiob/ltx38cd226f158623/rfcana.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘wrGraphVignette1.Rmd’ using rmarkdown

Quitting from wrGraphVignette1.Rmd:43-50 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'FactoMineR'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(FactoMineR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wrGraphVignette1.Rmd' failed with diagnostics:
there is no package called 'FactoMineR'
--- failed re-building ‘wrGraphVignette1.Rmd’

SUMMARY: processing the following file failed:
  ‘wrGraphVignette1.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘fdapace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘caretEnsemble’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
problem found in ‘exportSdrfDraft.Rd’
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Mao",
                      role = c("aut", "cre"),
                      email = "lmao@biostat.wisc.edu"),
               person(given = "Tuo",
                      family = "Wang",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘WRS2.Rnw’ using knitr

Quitting from WRS2.Rnw:193-195 [cor-plot1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'GGally'
---
Backtrace:
    x
 1. \-base::library("GGally")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'WRS2.Rnw' failed with diagnostics:
there is no package called 'GGally'
--- failed re-building ‘WRS2.Rnw’

SUMMARY: processing the following file failed:
  ‘WRS2.Rnw’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'GGally', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Packages suggested but not available for checking: 'EGRET', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/wru.Rcheck/00install.out’ for details.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpe1vGmX/Rf38b8da49e5f1cf': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘fgkm.Rd’, ‘plot.ewkm.Rd’, ‘predict.ewkm.Rd’, ‘twkm.Rd’, ‘twkm.sample.Rd’
Packages required but not available: 'semmcci', 'mice', 'semboottools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpMl6i6V/Rf38b33f2cdb15a2': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Rui Sun <rsunzju@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rui",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "rsunzju@gmail.com"),
               person(given = c("Maggie", "Haitian"),
                      family = "Wang",
                      role = "aut"))
as necessary.
checkRd: (-1) wtest.Rd:61-64: Lost braces
    61 | {When \code{w.order} =2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
checkRd: (-1) wtest.high.Rd:61-64: Lost braces
    61 | {When \code{w.order} > 2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Deisy", "Morselli"),
                      family = "Gysi",
                      role = c("aut", "cre"),
                      email = "deisy.ccnr@gmail.com"),
               person(given = "Andre",
                      family = "Voigt",
                      role = "aut"),
               person(given = c("Tiago", "Miranda"),
                      family = "Fragoso",
                      role = "aut"),
               person(given = "Eivind",
                      family = "Almaas",
                      role = "aut"),
               person(given = "Katja",
                      family = "Nowick.",
                      role = "aut"))
as necessary.
Package required but not available: ‘simts’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shu Chen <chenshu@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shu",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "chenshu@umich.edu"),
               person(given = "Andrzej",
                      family = "Galecki",
                      role = "aut",
                      email = "agalecki@umich.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'sde', 'ftsa', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mc2d’

Packages suggested but not available for checking: 'ggpubr', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/wyz.code.metaTesting.Rcheck/00install.out’ for details.
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/wyz.code.rdoc.Rcheck/00install.out’ for details.
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/wyz.code.testthat.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/x3ptools.Rcheck/00install.out’ for details.
File ‘xactonomial/libs/xactonomial.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpE2WqQT/file38e66e7fc52bb8/xegaGaMutationFactory.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘xegaGaGene-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpUMKIS1/file38f3f84f8193c0': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpUMKIS1/file38f3f84f8193c0': No such file or directory
Error in file(con, "r") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiwjSIL/ltx38dea9459cc5a7/xegaGpMutateFilterGene.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Maintainer: ‘Philip Leifeld <philip.leifeld@essex.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘chemnet.Rd’:
    http://dx.doi.org/10.1111/j.1540-5907.2011.00580.x
    http://dx.doi.org/10.1007%2F978-3-531-91883-9_6
  File ‘knecht.Rd’:
    http://dx.doi.org/10.1111/j.1467-9507.2009.00564.x
    http://dx.doi.org/10.1016/j.socnet.2009.02.004
Package required but not available: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'DescTools', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Susan Holmes <sp.holmes@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susan",
                      family = "Holmes",
                      role = c("aut", "cre"),
                      email = "sp.holmes@gmail.com"),
               person(given = "Sourav",
                      family = "Chatterjee",
                      role = "aut"))
as necessary.

The Description field contains
  Chatterjee, Sourav (2020) <arXiv:1909.10140> This package includes the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Felix Luginbuhl <felix.luginbuhl@protonmail.ch>’

Reading Rd files failed with message:
  cannot open the connection
cannot open the connection
problem found in ‘EMU_to_cm.Rd’
Running massageExamples to create ‘xlcharts-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpDMoR7a/file3a315352339fd5/GraphicalProperties.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpazYVv7/Rf3994b450786944': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) xml_to_df.Rd:144: Lost braces; missing escapes or markup?
   144 | Default {NULL} means the workbook will not be protected with a password}
       |         ^
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_frag.R’ ‘data_frag.R’ ‘elem.Rd’ ‘list_as_xml_document.R’
    ‘read_fragment.R’ ‘tag.R’ ‘write_xml.R’ ‘xml_fragment.R’
    ‘xmlbuilder.R’ ‘xmlbuilder.Rd’
Maintainer: ‘Trevor L Davis <trevor.l.davis@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Joris Meys <Joris.Meys@UGent.be>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘drugTargetInteraction.Rd’:
    https://doi.org/10.1093/bioinformatics/btn162
  File ‘loo.Rd’:
    http://doi.org/10.1093/bib/bby095
  File ‘proteinInteraction.Rd’:
    https://doi.org/10.1093/bioinformatics/bth910
  File ‘xnet-package.Rd’:
    http://doi.org/10.1093/bib/bby095
Running massageExamples to create ‘xnet-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpVZeBYa/file39790a3c97c588/residuals.tskrr.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘feature-samplers.Rmd’ using rmarkdown
--- finished re-building ‘feature-samplers.Rmd’

--- re-building ‘simulation-settings.Rmd’ using rmarkdown

Quitting from simulation-settings.Rmd:19-24 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'DiagrammeR'
---
Backtrace:
    ▆
 1. └─base::library(DiagrammeR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'simulation-settings.Rmd' failed with diagnostics:
there is no package called 'DiagrammeR'
--- failed re-building ‘simulation-settings.Rmd’

--- re-building ‘xplainfi.Rmd’ using rmarkdown
--- finished re-building ‘xplainfi.Rmd’

SUMMARY: processing the following file failed:
  ‘simulation-settings.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘xplain-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: xplain
> ### Title: Showing interpretation information for the results of a function
> ### Aliases: xplain
> 
> ### ** Examples
> 
> 
> library(car)
Error in library(car) : there is no package called ‘car’
Execution halted
Packages required but not available: 'FactoMineR', 'ggpubr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘labelled’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xpose’

Package suggested but not available for checking: ‘nlmixr2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Packages required but not available: 'GGally', 'xpose'

Packages suggested but not available for checking:
  'DiagrammeR', 'nlmixr2', 'xpose.nlmixr2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  Fatal error: cannot create 'R_TempDir'
Maintainer: ‘John Chambers <jmc@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "M."),
                      family = "Chambers",
                      role = "aut"),
               person(given = "John",
                      family = "Chambers",
                      role = "cre",
                      email = "jmc@r-project.org"))
as necessary.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
problems found in ‘string.Rd’, ‘table.attributes.Rd’
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Joao Claudio Macosso <joaoclaudiomacosso@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joao", "Claudio"),
                    family = "Macosso",
                    role = c("aut", "cre"),
                    email = "joaoclaudiomacosso@gmail.com")
as necessary.
Package required but not available: ‘sampleSelection’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘SACCR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) xwfGridsearch.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{iter}{Number of levels in the adaptive grid search. The resolution in b obtained is 2^{-1-iter}.}
       |                                                                                             ^
Packages required but not available:
  'Seurat', 'ggraph', 'AnnotationDbi', 'clusterProfiler'

Packages suggested but not available for checking:
  'ReactomePA', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carter T. Butts <buttsc@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carter", "T."),
                    family = "Butts",
                    role = c("aut", "cre"),
                    email = "buttsc@uci.edu")
as necessary.
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Maintainer: ‘John W. Emerson <john.emerson@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "W."),
                      family = "Emerson",
                      role = c("aut", "cre"),
                      email = "john.emerson@yale.edu"),
               person(given = c("Walton", "A."),
                      family = "Green",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Maintainer: ‘Somjit Roy <somjit.roy2001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somjit",
                    family = "Roy",
                    role = c("aut", "cre"),
                    email = "somjit.roy2001@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ycevo.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exhaustive_lhl.Rd’ ‘gaussian_fit.Rd’ ‘hyperbolic_fit.Rd’
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sergio Salvino Guirreri <sergioguirreri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sergio", "Salvino"),
                    family = "Guirreri",
                    role = c("aut", "cre"),
                    email = "sergioguirreri@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘ymd/libs/ymd.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpduJUaS/file3a1a412bb609e8/yml_blank.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Tinniam V Ganesh <tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Matías Castillo Aguilar <matcasti@umag.cl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

The Description field contains
  et al. (2019) <arXiv:1910.04475>. Model fitting can be carried out via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daewoo Pak <heavyrain.pak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daewoo",
                      family = "Pak",
                      role = c("aut", "cre"),
                      email = "heavyrain.pak@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Junlong Sun <junlong.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junlong",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "junlong.sun@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid URLs:
  URL: http: //cran.r-project.org/
    From: inst/doc/read_me_first.pdf
    Message: Invalid URL: missing authority part
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

The Description field contains
  Mayrink (2019) <arXiv:1910.02406>. Model fitting carried out via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ypr.Rcheck/00install.out’ for details.
Packages required but not available: 'sde', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Robert Lee <rhlee@colorado.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "rhlee@colorado.edu")
as necessary.
Maintainer: ‘Clare Horscroft <chorscroft@aol.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Clare",
                    family = "Horscroft",
                    role = c("aut", "cre"),
                    email = "chorscroft@aol.co.uk")
as necessary.
Package required but not available: ‘lomb’

Package suggested but not available for checking: ‘xsp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tanya Cashorali <tanyacash@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tanya",
                    family = "Cashorali",
                    role = c("aut", "cre"),
                    email = "tanyacash@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cache_report.R’ ‘list_deposit.R’
Package required but not available: ‘polite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mixtools', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘external_fitters.Rd’ ‘zfunction.Rd’ ‘zlm.Rd’ ‘zprint.Rd’
Maintainer: ‘Gavin Rozzi <gr@gavinrozzi.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tianchen Xu <tx2155@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianchen",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "tx2155@columbia.edu",
                      comment = c(ORCID = "0000-0002-0102-7630")),
               person(given = c("Ryan", "T."),
                      family = "Demmer",
                      role = "aut"),
               person(given = "Gen",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Ariel Duarte-López <aduarte@ac.upc.edu>’

The Description field contains
  (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘tolerance’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stefan Evert <stefan.evert@fau.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Evert",
                      role = c("aut", "cre"),
                      email = "stefan.evert@fau.de"),
               person(given = "Marco",
                      family = "Baroni",
                      role = "aut",
                      email = "marco.baroni@unitn.it"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘productivity_measures.Rd’:
    http://dx.doi.org/10.18419/opus-2556
  File ‘zipfR_package.Rd’:
    http://dx.doi.org/10.18419/opus-2556
Maintainer: ‘Melina Ribaud <melina.ribaud@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Melina",
                    family = "Ribaud",
                    role = c("aut", "cre"),
                    email = "melina.ribaud@gmail.com")
as necessary.
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘notate.R’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zoid.Rcheck/00install.out’ for details.
Package required but not available: ‘ggspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘demo_dutch_cities.Rmd’ using rmarkdown
--- finished re-building ‘demo_dutch_cities.Rmd’

--- re-building ‘hackathon.Rmd’ using rmarkdown
--- finished re-building ‘hackathon.Rmd’

--- re-building ‘paper.Rmd’ using rmarkdown

Quitting from paper.Rmd:58-72 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tmap'
---
Backtrace:
    ▆
 1. └─base::library(tmap)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'paper.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building ‘paper.Rmd’

SUMMARY: processing the following file failed:
  ‘paper.Rmd’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) ZIClass.Rd:87: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:72: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:74: Escaped LaTeX specials: \_
checkRd: (-1) zid.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:63: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:182: Lost braces
   182 |   dQuote{tab-delimited text file} when you have done and close the spreadsheet
       |         ^
Maintainer: ‘Jose M Pozo <josmpozo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/zoomerjoin.Rcheck/00install.out’ for details.
checkRd: (-1) in.zoom.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:13: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Note: skipping ‘zoo.Rnw’ due to unavailable dependencies: 'AER'
Maintainer: ‘David Beiner <zra.r.package@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Beiner",
                    role = c("aut", "cre"),
                    email = "zra.r.package@gmail.com")
as necessary.
Maintainer: ‘Ernest Guevarra <ernestgmd@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘anthro4.Rd’:
    https://doi.org/10.1136/bmj.j3423
Packages required but not available: 'flextable', 'officer'

Package suggested but not available for checking: ‘moonBook’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Oliver Kirchkamp <oliver@kirchkamp.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Kirchkamp",
                    role = c("aut", "cre"),
                    email = "oliver@kirchkamp.de")
as necessary.
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Frederik Kok Hansen <frederik_kok@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frederik", "Kok"),
                    family = "Hansen",
                    role = c("aut", "cre"),
                    email = "frederik_kok@icloud.com")
as necessary.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
checkRd: (-1) bind_tweets.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bind_tweets.Rd:22: Lost braces in \itemize; meant \describe ?
File ‘acc/libs/acc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘lifecycle’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acoRn.R’ ‘clean_input.R’ ‘create_mock_dataset.R’
    ‘exclude_duplicates.R’ ‘find_parents.R’ ‘identify_duplicates.R’
Namespace in Imports field not imported from: ‘hunspell’
  All declared Imports should be used.
checkRd: (-1) Ehrenfest.Rd:19: Lost braces
    19 | In this experiment there are i balls in Urn I, and remaining 2n-i balls in Urn II. Then at any instance, the probability of selecting a ball from Urn I and placing it in Urn II is i/2n, and the other way of placing a ball from Urn II to Urn I is (2n-i)/2n. At each instant we let the number i of balls in the Urn I to be the state of the system. Thus, the state space is S = { 0, 1, 2, \ldots, 2n }. Then we can pass from state i only to either of the states i-1 or i+1.
       |                                                                                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) Ehrenfest.Rd:20: Lost braces
    20 | Here, S = {0, 1, \ldots, 2n}. 
       |           ^
Namespace in Imports field not imported from: ‘svglite’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_accumulation_metrics.R’
checkRd: (-1) est_S_Plus_Plus_MethodA.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Plus_Plus_MethodB.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method B}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodA.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodB.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{*+} using Method B}
       |                                                          ^
checkRd: (-1) adana.Rd:25: Lost braces; missing escapes or markup?
    25 |   \item{gatype}{Type of GA. \itemize{\item{"gga": generational GA}  \item{"ssga": steady state GA} } {Default value is "gga"}}
       |                                                                                                      ^
checkRd: (-1) adana.Rd:26: Lost braces; missing escapes or markup?
    26 |   \item{objective}{Type of optimization. \itemize{\item{"min": minimization}  \item{"max": maximization} } {Default value is "max"}}
       |                                                                                                            ^
checkRd: (-1) adana.Rd:34: Lost braces; missing escapes or markup?
    34 |                  {Default value is "initbin"}}
       |                  ^
checkRd: (-1) adana.Rd:56: Lost braces; missing escapes or markup?
    56 |                \itemize{\item{"integer"}  \item{"real"} } {Default value is "real"}}
       |                                                           ^
checkRd: (-1) adana.Rd:185: Lost braces; missing escapes or markup?
   185 |     {Default value is "w"}
       |     ^
Namespaces in Imports field not imported from:
  ‘lefko3’ ‘rlang’
  All declared Imports should be used.
checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘IntervalEstimator-class.Rd’ ‘PValue-class.Rd’
    ‘PointEstimator-class.Rd’ ‘analyze.R’ ‘estimators.R’
    ‘evaluate_estimator.R’ ‘fisher_information.R’
    ‘integrate_over_sample_space.R’ ‘mle_distribution.R’ ‘n2c2_helpers.R’
    ‘plot.R’ ‘print.R’ ‘reference_implementation.R’
Malformed Description field: should contain one or more complete sentences.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘BayesFactor’ ‘GGally’ ‘Hmisc’ ‘WRS2’ ‘boot’ ‘car’ ‘dplyr’ ‘effects’
  ‘effsize’ ‘forcats’ ‘ggplot2’ ‘lm.beta’ ‘nlme’ ‘readr’ ‘robust’
  ‘sandwich’ ‘sjstats’ ‘tidyr’
  All declared Imports should be used.
checkRd: (-1) fitaep.Rd:14: Lost braces
    14 | \item A sequence of goodness-of-fit measures consist of Akaike Information Criterion (\code{AIC}), Consistent Akaike Information Criterion (\code{CAIC}), Bayesian Information Criterion (\code{BIC}), Hannan-Quinn information criterion (\code{HQIC}), Anderson-Darling (\code{AD}), Cram\'{e}er-von Misses (\code{CVM}), Kolmogorov-Smirnov (\code{KS}), and log-likelihood (\code{log-likelihood}) statistics.
       |                                                                                                                                                                                                                                                                                              ^
Namespace in Imports field not imported from: ‘flextable’
  All declared Imports should be used.
checkRd: (-1) estimate.affinity.matrix.Rd:31: Lost braces; missing escapes or markup?
    31 | than \code{Y}, then those variables that appear in \code{X} but no in {Y}
       |                                                                       ^
checkRd: (-1) estimate.affinity.matrix.lowrank.Rd:36: Lost braces; missing escapes or markup?
    36 | \code{Y}, then those variables that appear in \code{X} but no in {Y} should
       |                                                                  ^
checkRd: (-1) show.correlations.Rd:47: Lost braces
    47 | code{ndims} dimensions. Defaults to all dimensions unless the latter are
       |     ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘am_data.Rd’
Namespace in Imports field not imported from: ‘docstring’
  All declared Imports should be used.
File ‘ahaz/libs/ahaz.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) AEHMLE.Rd:42-45: Lost braces
    42 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
checkRd: (-1) AHMLE.Rd:41-43: Lost braces
    41 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
checkRd: (-1) aimPlot.Rd:39: Lost braces; missing escapes or markup?
    39 |  \item \code{Variable} {1st column: The various aims to be completed}
       |                        ^
checkRd: (-1) aimPlot.Rd:40: Lost braces; missing escapes or markup?
    40 |  \item \code{Percentage} {2nd column: The percentage of completeness}
       |                          ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.GRiwrm.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘airship.R’
File ‘AlgDesign/libs/AlgDesign.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lambda_functions.R’ ‘likelihood-space.R’ ‘snc.R’
checkRd: (-1) allestimates.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:28: Lost braces in \itemize; meant \describe ?
File ‘alphabetr/libs/alphabetr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Malformed Title field: should not end in a period.
Running examples in ‘ami-Ex.R’ failed
The error most likely occurred in:

> ### Name: using_r_version
> ### Title: R session information
> ### Aliases: using_r_version using_latest_r_version
> ###   using_interactive_session
> 
> ### ** Examples
> 
> using_r_version(ver = "4.3.0")
[1] FALSE
> using_latest_r_version()
Error in releases[[1]] : subscript out of bounds
Calls: using_latest_r_version ... is.package_version -> sub -> is.factor -> sub -> is.factor
Execution halted
Namespaces in Imports field not imported from:
  ‘devtools’ ‘dplyr’ ‘gridExtra’
  All declared Imports should be used.
checkRd: (-1) aMNLFA.prune.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘kernlab’
  All declared Imports should be used.
checkRd: (-1) AmpliconDuo-package.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:40-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:43-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:47-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:50-52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:53-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:56-58: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘Rtmp7TCwOh\amCluster_JEMY985S.htm’
  ‘Rtmp7TCwOh\amPairwise_YV69OSJF.htm’
  ‘Rtmp7TCwOh\amUnique_BZ8WHMYN.htm’
Running examples in ‘ananke-Ex.R’ failed
The error most likely occurred in:

> ### Name: as.data.frame
> ### Title: Coerce to a Data Frame
> ### Aliases: as.data.frame as.data.frame,CalibratedAges-method
> ###   as.data.frame,CalibratedIntervals-method as.data.frame,RECE-method
> ###   as.data.frame,ProxyRecord-method
> 
> ### ** Examples
> 
> ## Calibrate multiple dates
> cal <- c14_calibrate(
+   values = c(5000, 4500),
+   errors = c(45, 35),
+   names = c("X", "Y")
+ )
> 
> as.data.frame(cal)
Error in z[i, j, k, drop = drop] : incorrect number of dimensions
Calls: as.data.frame ... interval_hdr -> .local -> apply -> array -> [ -> [ -> .local
Execution halted
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if (requireNamespace("tinytest", quietly = TRUE)) {
  +   tinytest::test_package("ananke")
  + }
  Loading required package: aion
  
  test_c14_calibrate.R..........    0 tests    
  test_c14_calibrate.R..........    0 tests    Error in h(simpleError(msg, call)) : 
    error in evaluating the argument 'x' in selecting a method for function 'as.list': incorrect number of dimensions
  Calls: <Anonymous> ... array -> [ -> [ -> .local -> .handleSimpleError -> h
  Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app.R’
checkRd: (-1) animate.Rd:625-627: Lost braces
   625 | group = function(...) {
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ANOFA-contrastFrequencies.R’ ‘ANOFA-emFrequencies.R’
Namespaces in Imports field not imported from:
  ‘car’ ‘datasets’ ‘dplyr’ ‘ggplot2’ ‘plotly’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DescTools’ ‘HH’ ‘datasets’ ‘dplyr’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DescTools’ ‘HH’ ‘datasets’ ‘dplyr’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘curl’ ‘httr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘RcppParallel’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘pls’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘qpdf’
  All declared Imports should be used.
checkRd: (-1) predict_adjust.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) iconplot.Rd:172: Lost braces
   172 |     the height of the area containing the panels and a margin of size code{100 * 0.1} 
       |                                                                           ^
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                              ^
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                                            ^
Running examples in ‘ArchaeoPhases-Ex.R’ failed
The error most likely occurred in:

> ### Name: activity
> ### Title: Activity Plot
> ### Aliases: activity activity-method activity,EventsMCMC-method
> ###   activity,CumulativeEvents-method plot,ActivityEvents,missing-method
> 
> ### ** Examples
> 
> ## Coerce to MCMC
> eve <- as_events(mcmc_events, calendar = CE(), iteration = 1)
> eve <- eve[1:10000, ]
> 
> ## Tempo plot
> tmp <- tempo(eve)
Error in .local(x, decreasing, ...) : unused argument (method = "radix")
Calls: tempo -> tempo -> .local -> apply -> FUN -> sort -> sort
Execution halted
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if (requireNamespace("tinytest", quietly = TRUE)) {
  +   ## Force tests to be executed if in dev release
  +   ## (which we define as having a sub-release)
  +   NOT_CRAN <- length(unclass(packageVersion("ArchaeoPhases"))[[1]]) == 4
  + 
  +   tinytest::test_package("ArchaeoPhases", at_home = NOT_CRAN)
  + }
  Loading required package: aion
  Breaking changes!
  ArchaeoPhases v2.0 is the result of a complete code rewrite.
  For further details, please consult the changelog.
  
  test_activity.R...............    0 tests    
  test_activity.R...............    0 tests    
  test_activity.R...............    0 tests    Error in .local(x, decreasing, ...) : unused argument (method = "radix")
  Calls: <Anonymous> ... tempo -> tempo -> .local -> apply -> FUN -> sort -> sort
  Execution halted
Namespaces in Imports field not imported from:
  ‘bannerCommenter’ ‘config’ ‘feather’ ‘here’ ‘knitr’ ‘log4r’ ‘ps’
  ‘rmarkdown’ ‘skimr’ ‘snakecase’ ‘testthat’ ‘tidyverse’
  All declared Imports should be used.
checkRd: (-1) estimate_t0.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:75: Lost braces in \itemize; meant \describe ?
File ‘arcpbf/libs/arcpbf.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘purrr’
  All declared Imports should be used.
File ‘ash/libs/ash.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
--- re-building ‘asmapvignette.Rnw’ using knitr
Error: processing vignette 'asmapvignette.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'asmapvignette.tex' failed.
LaTeX errors:
! Undefined control sequence.
\tabu@cleanup ...bu@naturalX =\tabu@naturalX@save 
                                                  \let \tabu@naturalXmax \ta...
l.109 \end{tabu}
                \\[5mm]
! Emergency stop.
\tabu@cleanup ...bu@naturalX =\tabu@naturalX@save 
                                                  \let \tabu@naturalXmax \ta...
l.109 \end{tabu}
                \\[5mm]
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘asmapvignette.Rnw’

SUMMARY: processing the following file failed:
  ‘asmapvignette.Rnw’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) plot.AssetPricing.Rd:199-200: Lost braces
   199 |   yakka. (Note that \code{flap} stands for dQuote{function list
       |                                                  ^
Namespaces in Imports field not imported from:
  ‘DHARMa’ ‘DT’ ‘MASS’ ‘MVN’ ‘bestNormalize’ ‘brglm2’ ‘broom’
  ‘broom.mixed’ ‘bslib’ ‘car’ ‘coin’ ‘compositions’ ‘correlation’
  ‘dplyr’ ‘effectsize’ ‘fontawesome’ ‘ggpubr’ ‘glmmTMB’ ‘htmltools’
  ‘kableExtra’ ‘knitr’ ‘lme4’ ‘lmerTest’ ‘modelbased’ ‘nnet’
  ‘patchwork’ ‘performance’ ‘rstatix’ ‘see’ ‘shinyBS’ ‘shinyjs’
  ‘shinyscreenshot’ ‘sjPlot’ ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R.rsp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atpol_grids.R’ ‘miscRscript.r’ ‘plot_points_on_atpol.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘catchment_sim.R’ ‘elementary_pop.R’
Namespaces in Imports field not imported from:
  ‘dlnm’ ‘ggplot2’ ‘mvmeta’ ‘pbs’ ‘tsModel’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_freiburg.Rd’
Namespace in Imports field not imported from: ‘abind’
  All declared Imports should be used.
checkRd: (-1) get_candidate_covariates.Rd:50: Lost braces
    50 | \item \code{covars_data}   {The \code{data.frame} that is filtered out of \code{df} with only the selected \code{covars}}. The values of the
       |                            ^
checkRd: (-1) get_candidate_covariates.Rd:53: Lost braces
    53 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
checkRd: (-1) get_prioritised_covariates.Rd:40: Lost braces
    40 | \item \code{multiplicative_bias}{The absolute log of the multiplicative bias term for each of the auto-selected prioritised covariates}
       |                                 ^
checkRd: (-1) get_recurrence_covariates.Rd:34: Lost braces
    34 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
checkRd: (-1) Autoplotprotein-package.Rd:27: Lost braces
    27 | code{\link{help}}
       |     ^
checkRd: (-1) Autoplotprotein.Rd:25: Lost braces
    25 | code{\link{help}}
       |     ^
checkRd: (-1) data.Rd:22: Lost braces
    22 | code{\link{help}}
       |     ^
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Found the following significant warnings:

  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
checkRd: (-1) noauto_scorecard.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{fit}{See glm {stats}.}
       |                    ^
checkRd: (-1) noauto_scorecard2.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{fit}{See glm {stats}.}
       |                    ^
Namespaces in Imports field not imported from:
  ‘Ckmeans.1d.dp’ ‘broom.mixed’ ‘data.table’ ‘igraph’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘plotly’ ‘shinycssloaders’
  All declared Imports should be used.
checkRd: (-1) avar_mo_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘readxl’ ‘reshape2’ ‘stringr’ ‘tidyr’
  All declared Imports should be used.
File ‘awdb/libs/awdb.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespaces in Imports field not imported from:
  ‘DT’ ‘bslib’ ‘rclipboard’ ‘rmarkdown’
  All declared Imports should be used.
Unknown package ‘aws.ec2metadata’ in Rd xrefs
Namespace in Imports field not imported from: ‘openssl’
  All declared Imports should be used.
checkRd: (-1) cosmos_mongo.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{host}{For \code{cosmos_mongo_endpoint}, the URL of the Cosmos DB MongoDB endpoint. Usually of the form "https://{account-name}.mongo.cosmos.azure.com:443/".}
       |                                                                                                                       ^
Namespace in Imports field not imported from: ‘curl’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘R6’ ‘jose’ ‘openssl’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘httr’ ‘openssl’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘round_rect.r’ ‘waffle.r’
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘dexpfit.R’ ‘expfit.R’ ‘icarfit.R’ ‘logisticfit.R’
checkRd: (-1) barcoding.spe.identify2.Rd:27: Lost braces; missing escapes or markup?
    27 | read.dna() from package {ape} was used to obtain DNAbin object for unaligned non-coding barcodes.
       |                         ^
File ‘Barnard/libs/Barnard.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chadwick_installation.R’
Namespace in Imports field not imported from: ‘splines’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘vtable’
  All declared Imports should be used.
File ‘batman/libs/batman.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) coupledMetropolis.Rd:83-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:86-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:92-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:95-97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:98-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:104-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:110-112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:113-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:116-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:119-121: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:122-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:125-127: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bayesDccGarch.Rd:91: Lost braces; missing escapes or markup?
    91 | \item{$H_n1 }{ Bayesian prediction of volatilities and co-volatilities for y_{n+1}.}
       |                                                                              ^
checkRd: (-1) bayesDccGarch.Rd:92: Lost braces; missing escapes or markup?
    92 | \item{$R_n1 }{ Bayesian prediction of coditional correlation for y_{n+1}.}
       |                                                                    ^
Namespaces in Imports field not imported from:
  ‘MASS’ ‘MatrixModels’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘plyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘gridExtra’ ‘loo’ ‘stringr’ ‘xlsx’
  All declared Imports should be used.
checkRd: (-1) bma.bx.cy.Rd:69: Lost braces
    69 | the initial values for parameters in models. For example, inits<-function(){list(alpha=0,beta=0,c=0,var1=0.5,r=1,lamda=0.01)}.
       |                                                                            ^
Namespace in Imports field not imported from: ‘FastGP’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helper_functions.R’
Namespaces in Imports field not imported from:
  ‘HDInterval’ ‘carData’ ‘rjags’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘Matrix’ ‘matrixcalc’ ‘stats’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
checkRd: (-1) BayesTreePrior.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:41: Lost braces in \itemize; meant \describe ?
File ‘BayesTree/libs/BayesTree.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) runUI.Rd:11: Lost braces
    11 | Runs a \bold{Shiny} application. This function normally does not return; interrupt bold{R} to stop the application (usually by pressing Ctrl+C or Esc).
       |                                                                                        ^
checkRd: (-1) goftype1.Rd:4: Lost braces
     4 | \description{The goodness-of-fit (GOF) measures consist of Anderson-Darling (\code{AD}) and Cram\'{e}er-von Misses (\code{CVM}) statistics for progressive type-I interval censoring scheme are given, respectively, by
       |                                                                                                   ^
Namespaces in Imports field not imported from:
  ‘coda’ ‘knitr’ ‘plyr’
  All declared Imports should be used.
checkRd: (-1) WindowSweep.Rd:32: Lost braces
    32 | `code{\link{GetVT}}`.   Otherwise, any column (e.g. \code{"Depth"}) in the 
       |      ^
checkRd: (-1) WindowSweep.Rd:36: Lost braces
    36 | \code{T.mid}  from the output of the `code{\link{GetVT}}`.}
       |                                           ^
checkRd: (-1) bde.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:56: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘matrixStats’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘WriteXLS’ ‘haven’ ‘plyr’ ‘xtable’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘chron’ ‘colorspace’ ‘gtable’ ‘htmltools’ ‘htmlwidgets’
  ‘httpuv’ ‘magrittr’ ‘munsell’ ‘plyr’ ‘scales’ ‘stringi’ ‘xtable’
  ‘yaml’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_contrast.R’ ‘apply_contrast.Rd’ ‘average_predictions.Rd’
    ‘estimate_varcov.R’ ‘estimate_varcov.Rd’ ‘get_marginal_effect.R’
    ‘get_marginal_effect.Rd’ ‘predict_counterfactuals.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘fitting.R’
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
File ‘BenfordTests/libs/BenfordTests.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) sockeye.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sockeye.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:14: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘BiDAG’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘compiler’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘dplyr’ ‘ggplot2’ ‘readxl’ ‘rlist’ ‘shinyBS’ ‘shinyWidgets’
  ‘shinydashboard’ ‘shinyjs’ ‘shinythemes’ ‘stringr’ ‘tidyr’
  All declared Imports should be used.
Malformed Title field: should not end in a period.
File ‘BiasedUrn/libs/BiasedUrn.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘RBGL’
  All declared Imports should be used.
checkRd: (-1) BiDimRegression.Rd:29: Lost braces; missing escapes or markup?
    29 | \item \code{euclidean.df1, affine.df1} -  degrees of freedom of the nominator used for the F-statistics propagated by Nakaya (1997); df1 = p-2, with p is the number of elements  needed to calculate the referring model: p=4 for the Euclidean and p=6 for the affine geometry {Nakaya, 1997, Table 1}.
       |                                                                                                                                                                                                                                                                                  ^
Found the following calls to data() loading into the global environment:
File ‘biglm/R/bigglm.R’:
  data(reset = TRUE)
  data(reset = FALSE)
See section ‘Good practice’ in ‘?data’.
checkRd: (-1) pQF.Rd:30: Lost braces; missing escapes or markup?
    30 | When \code{M} is not square, a randomised estimator for the trace of \code{crossprod(M)^2} is used. This is the sample size. When \code{M} is of \code{"matrixfree"} and does not include the trace of {crossprod(M)} as a component, this sample size will also be used to compute that. See Hutchinson reference. }
       |                                                                                                                                                                                                        ^
Namespace in Imports field not imported from: ‘survival’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
checkRd: (-1) binom.confint.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:32-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:45: Lost braces in \itemize; meant \describe ?
File ‘binom/libs/binom.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘gtools’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bbassets.R’
checkRd: (-1) calc_ed.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_pi.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_si.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) cluster_reg_exp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
   118 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
   134 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PCAbiplot_Helper.R’ ‘TDAbiplot.R’ ‘TDAbiplot.Rd’
    ‘TDAbiplot_helper.R’ ‘insertAxDeets.R’ ‘insertDataTable.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘AoD.Rd’ ‘AoD.biplot.Rd’ ‘CA.Rd’ ‘CA.biplot.Rd’ ‘CLPs.Rd’ ‘CVA.Rd’
    ‘CVA.biplot.Rd’ ‘PCA.Rd’ ‘PCA.biplot.Rd’ ‘PCO.Rd’ ‘PCO.biplot.Rd’
    ‘alpha.bags.Rd’ ‘axes.Rd’ ‘axes_coordinates.Rd’ ‘biplot.R’
    ‘biplot.Rd’ ‘classification.Rd’ ‘classify.Rd’ ‘density1D.Rd’
    ‘density2D.Rd’ ‘ellipses.Rd’ ‘fit.measures.Rd’ ‘interpolate.Rd’
    ‘legend.type.Rd’ ‘means.Rd’ ‘newaxes.Rd’ ‘newsamples.Rd’
    ‘plot.biplot.Rd’ ‘prediction.Rd’ ‘print.biplot.Rd’ ‘reflect.Rd’
    ‘regress.Rd’ ‘regress.biplot.Rd’ ‘rotate.Rd’ ‘samples.Rd’
    ‘summary.biplot.Rd’ ‘translate_axes.R’ ‘translate_axes.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bits_to_raw.Rd’ ‘bitstream-ints.R’ ‘bitstream-uints-exp-golomb.R’
Found the following significant warnings:

  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
  Warning in regulartable(df) : 'regulartable' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘markdown’
  All declared Imports should be used.
checkRd: (-1) RLdata500.Rd:8: Lost braces
     8 | A data frame with five variables: \code{fname_c1},\code{lname_c1},  \code{by}, code{bm}, \code{bd}.
       |                                                                                    ^
checkRd: (-1) identity.RLdata500.Rd:15: Lost braces
    15 | format A vector that contains the code{id}
       |                                       ^
checkRd: (-1) durban.Rd:16: Lost braces; missing escapes or markup?
    16 | This data set was obtained from the durban.rowcol {agridat} example in package 'agridat' 
       |                                                   ^
checkRd: (-1) fraction.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:31-32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assg2xBalance.R’
checkRd: (-1) estimate_density.Rd:25: Lost braces; missing escapes or markup?
    25 | evenly spaced points between \code{min} and {max}.
       |                                             ^
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘ggplot2’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘ggplot2’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
checkRd: (-1) bluebike.Rd:17: Lost braces
    17 | \item{\code{import_month_data}}\cr {Takes in numeric year/month values and imports data from \href{https://www.bluebikes.com/system-data}{Blue Bikes System Data} for the specified time}
       |                                    ^
checkRd: (-1) bluebike.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{\code{station_distance}}\cr {Returns stations with distance in ascending order given the user's current location}
       |                                   ^
checkRd: (-1) bluebike.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{\code{station_radius}}\cr {Plots the position of the stations within walking distance (500 m), and present the basic information about the stations via leaflet}
       |                                 ^
checkRd: (-1) bluebike.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{\code{trip_distance}}\cr {Computes the geographical distance between the start and end stations}
       |                                ^
checkRd: (-1) bluebike.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{\code{trip_history_sample}} \cr {A sample of 1000 trip data entries from February 2022}
       |                                       ^
checkRd: (-1) bluebike.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{\code{station_data}} \cr {A dataset that includes identification, position, and other basic information about bluebike stations}
       |                                ^
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rgraphviz’ ‘fastDummies’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘e1071’
  All declared Imports should be used.
checkRd: (-1) strength.viewer.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:152: Lost braces in \itemize; meant \describe ?
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |               ^
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |                                             ^
checkRd: (-1) refAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:19: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘HSAUR3’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
File ‘bootruin/libs/bootruin.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_dat_one_trial_exp_covar.R’ ‘sim_dat_one_trial_exp_nocovar.R’
Namespaces in Imports field not imported from:
  ‘CCA’ ‘brainR’ ‘elasticnet’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BranchGLM.R’ ‘BranchGLMTable.R’ ‘VariableImportance.R’
    ‘VariableImportance.boot.R’ ‘summaryBranchGLMVS.R’
File ‘Branching/libs/Branching.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘brm_archetype_average_cells.Rd’ ‘brm_archetype_average_effects.Rd’
    ‘brm_archetype_cells.Rd’ ‘brm_archetype_effects.Rd’
    ‘brm_archetype_successive_cells.Rd’
    ‘brm_archetype_successive_effects.Rd’ ‘brm_formula.Rd’
    ‘brm_prior_archetype.Rd’ ‘brm_prior_label.Rd’ ‘brm_prior_template.Rd’
    ‘brm_recenter_nuisance.Rd’ ‘summary.brms_mmrm_archetype.Rd’
    ‘utils_archetype.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘census2021.Rd’
Namespaces in Imports field not imported from:
  ‘rworldxtra’ ‘sp’
  All declared Imports should be used.
checkRd: (-1) bscontrol.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{opt.solver}{a character string in the set {'enum', 'enum_c', 'gurobi', 'cplex', 'lpSolve', 'greedy'} indicating the optimization solver to be used in the program. The choice of 'cplex' requires the package \code{cplexAPI}, 'gurobi' requires the package \code{gurobi}, and 'lpSolve' requires the package \code{lpSolve}. These solver options are only available in the full version at \url{https://github.com/profyliu/bsnsing/}. The default (and the best) is 'enum_c'.}
       |                                                 ^
checkRd: (-1) bscontrol.Rd:45: Lost braces; missing escapes or markup?
    45 | \item{opt.model}{a character string in the set {'gini','error'} indicating the optimization model to solve in the program. The default is 'gini'. The 'error' option is not available in the current version.}
       |                                                ^
Namespace in Imports field not imported from: ‘magrittr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘grDevices’ ‘graphics’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘R6’ ‘RcppParallel’ ‘purrr’ ‘rstantools’ ‘scales’ ‘vizdraws’
  All declared Imports should be used.
checkRd: (-1) bubbleHMLegends.Rd:42: Lost braces; missing escapes or markup?
    42 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) bubbleHeatmap.Rd:96: Lost braces; missing escapes or markup?
    96 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) multiPlotInput.Rd:117: Lost braces; missing escapes or markup?
   117 | \code{unitBase}. This will be supplied to pretty function. If {sizeBreaks} is
       |                                                               ^
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘magrittr’ ‘rmarkdown’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_data_from_bursa.R’ ‘list_data_names.R’
checkRd: (-1) depreciation-class.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:46-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:46-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:38-39: Lost braces in \itemize; meant \describe ?
File ‘bvarsv/libs/bvarsv.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Malformed Description field: should contain one or more complete sentences.
File ‘bvls/libs/bvls.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘markdown’
  All declared Imports should be used.
checkRd: (-1) calcUnique.Rd:24: Lost braces
    24 | functions, and often the /code{cut()} function are relatively slow when working with tens of millions of rows or more.
       |                               ^
checkRd: (-1) calibration_bands.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{y}{response variable (in {0,1}).}
       |                                ^
checkRd: (-1) Recording.Rd:112: Lost braces; missing escapes or markup?
   112 | Stop recording images with {camcorder}.
       |                            ^
Namespace in Imports field not imported from: ‘sf’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘do_la.Rd’ ‘linalg.Rd’ ‘scale_matrix.Rd’ ‘solve.caracas_symbol.Rd’
    ‘solve_lin.Rd’
checkRd: (-1) plot.ca.rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitweibull.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘cosinor-constructor.R’
checkRd: (-1) build_for_cran.Rd:13: Lost braces
    13 | The exit status code{R CMD build}, invisibly.
       |                     ^
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘broom’ ‘epitools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘epitools’ ‘forcats’ ‘purrr’
  All declared Imports should be used.
checkRd: (-1) as.mbsts.Rd:71: Lost braces; missing escapes or markup?
    71 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
checkRd: (-1) mcmc.Rd:61: Lost braces; missing escapes or markup?
    61 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘causal-model.R’ ‘check-linearity.R’ ‘deprecated.R’
    ‘translation-modules.R’ ‘utils.R’
Namespace in Imports field not imported from: ‘GeneNet’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘fields’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atp_plot.Rd’ ‘bioscope_plot.Rd’ ‘energetics_lme_summary.Rd’
    ‘energetics_ols_summary.Rd’ ‘fit_lme.Rd’ ‘get_energetics.Rd’
    ‘get_energetics_summary.Rd’ ‘get_rate_summary.Rd’
    ‘make_bioscope_plot.Rd’ ‘normalize.Rd’ ‘partition_data.Rd’
    ‘pipelines.r’ ‘rate_plot.R’ ‘rate_plot.Rd’ ‘rates_lme_summary.Rd’
    ‘read_data.Rd’
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Unexported objects imported by ':::' calls:
  ‘copula:::dCdu’ ‘copula:::fitCopStart’
  See the note in ?`:::` about the use of this operator.
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Running examples in ‘CensSpatial-Ex.R’ failed
The error most likely occurred in:

> ### Name: algnaive12
> ### Title: Naive 1 and Naive 2 method for spatial prediction.
> ### Aliases: algnaive12
> ### Keywords: Spatial Censored SAEM
> 
> ### ** Examples
> 
> ###simulated coordinates
> n<-200 ### sample size for estimation.
> n1=100 ### number of observation used in the prediction.
> 
> ###simulated coordinates
> r1=sample(seq(1,30,length=400),n+n1)
> r2=sample(seq(1,30,length=400),n+n1)
> coords=cbind(r1,r2)### total coordinates (used in estimation and prediction).
> 
> coords1=coords[1:n,]####coordinates used for estimation.
> 
> type="matern"### covariance structure.
> 
> xtot<-cbind(1,runif((n+n1)),runif((n+n1),2,3))## X matrix for estimation and prediction.
> xobs=xtot[1:n,]## X matrix for estimation.
> 
> ###simulated data
> obj=rspacens(cov.pars=c(3,.3,0),beta=c(5,3,1),x=xtot,coords=coords,kappa=1.2,
+ cens=0.25,n=(n+n1),n1=n1,cov.model=type,cens.type="left")
> 
> data2=obj$datare
> data2[,4:5]=xobs[,-1]
> 
> cc=obj$cc
> y=obj$datare[,3]
> cutoff=rep(obj$cutoff,length(y[cc==1]))
> 
> 
> aux2=algnaive12(data=data2,cc=obj$cc,covar=TRUE,covar.col=4:5,
+ copred=obj$coords1,thetaini=c(.1,.2),y.col=3,coords.col=1:2,
+ fix.nugget=TRUE,nugget=0,kappa=1.2,cutoff=cutoff,trend=~V4+V5,
+ cov.model=type)
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Namespace in Imports field not imported from: ‘data.table’
  All declared Imports should be used.
checkRd: (-1) centroid.Rd:22: Lost braces; missing escapes or markup?
    22 | Centroid value C_{cen}(v) for node v defined as:
       |                  ^
checkRd: (-1) clusterrank.Rd:23: Lost braces; missing escapes or markup?
    23 | where the term f(c_{i}) accounts for the effect of i's local clustering and the term '+1' results from the contribution of \eqn{j}{j} itself. \cr
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ce-hg.R’ ‘ce-mean.R’ ‘ce-prepdata.R’ ‘ce-quantiles.R’ ‘ce-uccs.R’
    ‘get-survey-files.R’ ‘read-expd.R’ ‘read-fmld.R’ ‘read-fmli.R’
    ‘read-mtbi.R’ ‘recode-ce-variables.R’
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |   ^
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |          ^
Namespaces in Imports field not imported from:
  ‘base’ ‘stats’ ‘tidyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘batchtools’ ‘data.table’ ‘dplyr’ ‘ggplot2’ ‘htmltools’
  ‘jsonlite’ ‘magrittr’ ‘methods’ ‘plotly’ ‘reshape’ ‘rlang’ ‘shiny’
  ‘shinyWidgets’ ‘shinyjqui’ ‘shinyjs’ ‘shinymaterial’ ‘sortable’ ‘ssh’
  ‘xml2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘lmtest’
  All declared Imports should be used.
Malformed Title field: should not end in a period.
File ‘cgAUC/libs/cgAUC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘tidyverse’
  All declared Imports should be used.
checkRd: (-1) Hausdorff.dist.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{vec1}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) Hausdorff.dist.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{vec2}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) online.univar.multi.Rd:47-57: Lost braces
    47 | online.univar.one2 = function(y_vec, gamma, tau_gamma, ...){
       |                                                            ^
checkRd: (-1) online.univar.multi.Rd:50-55: Lost braces
    50 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:71-89: Lost braces
    71 | online.univar.one3 = function(y_vec, tau_vec, ...){
       |                                                   ^
checkRd: (-1) online.univar.multi.Rd:72-74: Lost braces
    72 |   if(length(y_vec) != length(tau_vec)){
       |                                       ^
checkRd: (-1) online.univar.multi.Rd:77-87: Lost braces
    77 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:81-86: Lost braces
    81 |     while(j < J & FLAG == 0){
       |                             ^
Namespaces in Imports field not imported from:
  ‘AER’ ‘graphics’ ‘lmtest’
  All declared Imports should be used.
checkRd: (-1) cql.Rd:28: Lost braces; missing escapes or markup?
    28 | {X} \code{<x_var>, <(x_facet)>}: \tab\tab\tab\tab  X-axis variable. May include a second categorical\cr
       | ^
checkRd: (-1) cql.Rd:30: Lost braces; missing escapes or markup?
    30 | {Y} \code{<y_var>}: \tab\tab\tab\tab Y-axis variable. *Not used for \code{hist}.\cr
       | ^
checkRd: (-1) cql.Rd:38: Lost braces; missing escapes or markup?
    38 | {Y_label} \code{'<ylab>'}: \tab\tab\tab\tab  Y-axis custom label. Defaults to <y_var>\cr
       | ^
checkRd: (-1) cql.Rd:39: Lost braces; missing escapes or markup?
    39 | {Legend} \code{'<legend>'}: \tab\tab\tab\tab  Legend custom label. Defaults to <x_category>\cr
       | ^
checkRd: (-1) cql.Rd:40: Lost braces; missing escapes or markup?
    40 | {Colorset} \code{'<clist>'}: \tab\tab\tab\tab  Custom set of colors for <x_category> levels.\cr
       | ^
checkRd: (-1) cql.Rd:42: Lost braces; missing escapes or markup?
    42 | {AggFunc} \code{'<func>'}: \tab\tab\tab\tab Summary function for \code{bar} type.\cr
       | ^
checkRd: (-1) cql.Rd:45: Lost braces; missing escapes or markup?
    45 | {Fit} \code{'<show_se>'}: \tab\tab\tab\tab Valid types: \code{true|false}. Fit quadratic line.\cr
       | ^
checkRd: (-1) cql.Rd:47: Lost braces; missing escapes or markup?
    47 | {ConfInt} \code{'<interval>'}: \tab\tab\tab\tab  Show error bars. Value is confidence interval value. E.g. '.95'
       | ^
checkRd: (-1) create_unit_tests.Rd:17: Lost braces; missing escapes or markup?
    17 | Create `{testthat}` test cases for the code.
       |         ^
Namespaces in Imports field not imported from:
  'knitr' 'rmarkdown'
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dbplyr’
  All declared Imports should be used.
checkRd: (-1) C316.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C317.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C60.amp.Rd:63-67: Lost braces
    63 |     40 x {
       |          ^
Namespace in Imports field not imported from: ‘htmltools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘dplyr’ ‘prettydoc’ ‘rmdformats’ ‘skimr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘stringr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
checkRd: (-1) ec.datalag.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{prepares Dy y_1 Dy_1 ... Dy_{nlag-1} for estimation}
       |                                    ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                      ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces; missing escapes or markup?
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                                          ^
checkRd: (-1) lagn.Rd:21: Lost braces; missing escapes or markup?
    21 |              REM: alternative to "lead-lag" {dplyr} which applies to vector y
       |                                             ^
Namespace in Imports field not imported from: ‘magrittr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘circlize’
  All declared Imports should be used.
checkRd: (-1) CIplot.Rd:58: Lost braces; missing escapes or markup?
    58 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.
       |                       ^
Namespace in Imports field not imported from: ‘RColorBrewer’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘networkD3’
  All declared Imports should be used.
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                 ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                         ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator_loop.Rd:98: Lost braces; missing escapes or markup?
    98 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++},
       |                                                                 ^
checkRd: (-1) data_generator_loop.Rd:99: Lost braces; missing escapes or markup?
    99 |   S_{*+} and PP estimands}
       |     ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_cluster_composition.R’ ‘extract_ids_vector.R’
    ‘perform_clustering.R’
checkRd: (-1) get_langs.Rd:13: Lost braces
    13 | character vector listing all the languages that tag API call supports. See \code{\link{tag_images}} and code{\link{tag_image_urls}}
       |                                                                                                             ^
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_raster.Rd’ ‘clc.R’ ‘clc_category.R’ ‘clc_raster.R’ ‘copy_to.Rd’
    ‘cut_to_extent.Rd’ ‘get_colors.Rd’ ‘get_levels.Rd’ ‘get_raster.Rd’
    ‘plot_clc.Rd’ ‘prepare_plot.Rd’ ‘save_to.Rd’
File ‘ClickClust/libs/ClickClust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                   ^
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                                 ^
File ‘clogitboost/libs/clogitboost.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) print.clogitL1.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:23: Lost braces in \itemize; meant \describe ?
File ‘clogitL1/libs/clogitL1.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cloud_drive_download_bulk.Rd’ ‘cloud_drive_read_bulk.Rd’
    ‘cloud_drive_upload_bulk.Rd’ ‘cloud_drive_write_bulk.Rd’
    ‘cloud_s3_download_bulk.Rd’ ‘cloud_s3_read_bulk.Rd’
    ‘cloud_s3_upload_bulk.Rd’ ‘cloud_s3_write_bulk.Rd’
checkRd: (-1) clr.Rd:24: Lost braces
    24 | the sense that its Karhunen-Lo\`{e}ve decomposition has qx terms only.}
       |                                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bias_df_combined.R’ ‘create_table_ep_15.R’
    ‘precision_calculate_aov_info.R’
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
File ‘clustering.sc.dp/libs/clustering.sc.dp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
File ‘ClusterStability/libs/ClusterStability.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘sp’ ‘spdep’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘stringi’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘cluster’ ‘datasets’ ‘dplyr’ ‘klaR’ ‘psycho’ ‘shiny’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
--- finished re-building ‘CovarianceStructure.Rmd’

--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: processing the following file failed:
  ‘SpatialExMeuseData.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
checkRd: (-1) CMAPSS.Rd:10: Lost braces
    10 | \item \code{train}{ a list of class "hhsmm.data" as the train dataset}
       |                   ^
checkRd: (-1) CMAPSS.Rd:11: Lost braces
    11 | \item \code{test}{ a list of class "hhsmm.data" as the test dataset}
       |                  ^
checkRd: (-1) CMAPSS.Rd:12: Lost braces
    12 | \item \code{subsets}{ a matrix containig the number of units in each subset of the CMAPSS data set (FD001-FD004) for the train and test datasets}
       |                     ^
Namespace in Imports field not imported from: ‘MPV’
  All declared Imports should be used.
checkRd: (-1) bvp.Rd:24: Lost braces
    24 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
checkRd: (-1) ivp.Rd:38: Lost braces
    38 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
checkRd: (-1) ivpsys.Rd:29: Lost braces
    29 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
File ‘cmprsk/libs/cmprsk.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘caret’ ‘e1071’ ‘epitools’ ‘shiny’ ‘shinyMatrix’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘basis.R’
checkRd: (-1) cnlt.reg.Rd:43: Lost braces
    43 | \emph{Technometrics}, bold{60} (1), 48-60, DOI 10.1080/00401706.2017.1281846.\cr\cr
       |                           ^
checkRd: (-1) fwtnppermC.Rd:35: Lost braces
    35 | Given \eqn{n} points on a line, \env{x}, each with a corresponding env{f} value this function computes
       |                                                                       ^
Namespaces in Imports field not imported from:
  ‘RColorBrewer’ ‘snow’ ‘viridisLite’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘nnet’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘fields’ ‘knitr’
  All declared Imports should be used.
Running ‘testthat.R’ [19s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(cocoon)
  > 
  > test_check("cocoon")
  Saving _problems/test-format_stats_htest-270.R
  [ FAIL 1 | WARN 42 | SKIP 1 | PASS 305 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-format_statvalues.R:94:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-format_stats_htest.R:267:3'): formatting t-tests works properly ──
  Expected `format_stats(test_ttest3)` to equal "_V_ = 27.0, _p_ = .634".
  Differences:
  `actual`:   "_V_ = 32.0, _p_ = .645"
  `expected`: "_V_ = 27.0, _p_ = .634"
  
  Backtrace:
      ▆
   1. ├─base::suppressMessages(...) at test-format_stats_htest.R:267:3
   2. │ └─base::withCallingHandlers(...)
   3. └─testthat::expect_equal(format_stats(test_ttest3), "_V_ = 27.0, _p_ = .634")
  
  [ FAIL 1 | WARN 42 | SKIP 1 | PASS 305 ]
  Error:
  ! Test failures.
  Execution halted
File ‘coenoflex/libs/coenoflex.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘coin’ ‘ggplot2’ ‘plyr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Namespaces in Imports field not imported from:
  ‘magrittr’ ‘qpdf’
  All declared Imports should be used.
checkRd: (-1) getHistList.Rd:32: Lost braces; missing escapes or markup?
    32 | ({FALSE})? If a bin is empty, the center of the bin is returned as the
       |  ^
checkRd: (-1) imageClusterPipeline.Rd:82: Lost braces; missing escapes or markup?
    82 | of the bin ({FALSE})? If a bin is empty, the center of the bin is returned
       |             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘simulate_populations.R’
Unexported object imported by a ':::' call: ‘crayon:::mypaste’
  See the note in ?`:::` about the use of this operator.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) xsimplex.Rd:6: Lost braces; missing escapes or markup?
     6 |              Generates all points on a {p,n} simplex lattice (i.e. a p-part
       |                                        ^
checkRd: (-1) BMD.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add.risk.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add.risk.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:67-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) score_log_nonparam.Rd:36: Lost braces; missing escapes or markup?
    36 | {0, 1}.
       | ^
checkRd: (-1) score_log_semiparam.Rd:40: Lost braces; missing escapes or markup?
    40 | values in {0, 1}.
       |           ^
checkRd: (-1) sort_pairs.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
File ‘compareC/libs/compareC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compareMCMCs.R’ ‘metrics-addMetrics.R’
checkRd: (-1) glass.Rd:10: Lost braces
    10 | \item{item}{factor}{200 levels - which item the measurements came from}
       |                    ^
checkRd: (-1) glass.Rd:11-12: Lost braces
    11 | \item{fragment}{factor}{4 levels - which of the four fragments from each item the observations were made
       |                        ^
checkRd: (-1) glass.Rd:13: Lost braces
    13 | \item{logNaO}{numeric}{log of sodium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:14: Lost braces
    14 | \item{logMgO}{numeric}{log of magnesium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:15: Lost braces
    15 | \item{logAlO}{numeric}{log of aluminium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:16: Lost braces
    16 | \item{logSiO}{numeric}{log of silicon concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:17: Lost braces
    17 | \item{logKO}{numeric}{log of potassium concentration to oxygen concentration}
       |                      ^
checkRd: (-1) glass.Rd:18: Lost braces
    18 | \item{logCaO}{numeric}{log of calcium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:19: Lost braces
    19 | \item{logFeO}{numeric}{log of iron concentration to oxygen concentration}
       |                       ^
checkRd: (-1) atomdeps.Rd:9: Lost braces
     9 |  \item{"tangle"}: {Dihedral angle defined by atoms A-B-C-D as described below. \code{NA}'s represent the free side chain dihedral angles \emph{chi} for that amino acid.}
       |                   ^
checkRd: (-1) atomdeps.Rd:10: Lost braces; missing escapes or markup?
    10 |  \item{"names"}: {The component atoms of the amino acid side chain.  Represents atom D in the dihedral.}
       |                  ^
checkRd: (-1) atomdeps.Rd:11: Lost braces; missing escapes or markup?
    11 |  \item{"matx"}: {The names of atoms A,B,C in the dihedral, with rows corresponding to the atoms in "names".}
       |                 ^
checkRd: (-1) atomdeps.Rd:12: Lost braces; missing escapes or markup?
    12 |  \item{"bangle"}: {Planar bond angle formed between B-C-D}
       |                   ^
checkRd: (-1) atomdeps.Rd:13: Lost braces; missing escapes or markup?
    13 |  \item{"blength"}: {Bond length between C-D}
       |                    ^
Namespaces in Imports field not imported from:
  ‘PearsonDS’ ‘VGAM’ ‘actuar’ ‘fExtremes’ ‘rmutil’
  All declared Imports should be used.
checkRd: (-1) keener.Rd:82: Lost braces; missing escapes or markup?
    82 | a_{ij} = (S_ij + 1) / (S_ij + S_ji + 2). This step should make comparing
       |   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fitmodel.R’
checkRd: (-1) concstats_hhi.Rd:13: Lost braces; missing escapes or markup?
    13 | value is required. Ranges from {0, 1} and often used for comparison over
       |                                ^
Namespaces in Imports field not imported from:
  ‘kernlab’ ‘purrr’ ‘survminer’ ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mvtnorm’
  All declared Imports should be used.
checkRd: (-1) binary_class_cm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘lwgeom’ ‘s2’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘Hmisc’ ‘dplyr’ ‘foreign’ ‘lavaan’ ‘openxlsx’ ‘purrr’ ‘semTools’
  ‘shinyWidgets’ ‘stringr’ ‘summarytools’ ‘waiter’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘scales’ ‘sna’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api-get_datalog.R’ ‘api-get_device.R’ ‘api-get_devices.R’
    ‘api-get_element.R’ ‘api-get_elements.R’ ‘api-get_project.R’
    ‘api-get_projects.R’ ‘api-get_users_me.R’ ‘client.R’
File ‘ConsReg/libs/ConsReg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Running examples in ‘constrainedKriging-Ex.R’ failed
The error most likely occurred in:

> ### Name: CKrige
> ### Title: Constrained, Covariance-matching Constrained and Universal
> ###   Kriging
> ### Aliases: CKrige CKrige.points CKrige.polygons CKrige-methods
> ###   CKrige,formula,data.frame,formula,preCKrigePoints-method
> ###   CKrige,formula,data.frame,formula,preCKrigePolygons-method
> ###   print.CKrige.exout.polygons summary.CKrige.exout.polygons
> ###   print.CKrige.exout.points summary.CKrige.exout.points
> ### Keywords: methods
> 
> ### ** Examples
> 
> 
> 
> 
> ### example 7: universal block Kriging of mean over whole domain
> ### cf chapter 4 of vignette of package georob
> ### (https://CRAN.R-project.org/package=georob)
> if(!requireNamespace("gstat", quietly = TRUE)){
+   stop("install package gstat to run example")
+ }
> ### load coalash data
> data(coalash, package="gstat")
> 
> ### generate SpatialPointsDataFrame covering entire domain of coalash data
> coalash.domain <- rbind(c(0.5,0), c(16.5,0), c(16.5,24), c(0.5,24), c(0.5,0))
> coalash.domain <- SpatialPolygonsDataFrame(
+   SpatialPolygons(list(Polygons(list(Polygon(coalash.domain)), ID= "domain"))),
+   data=data.frame(x=8.5,y=12,row.names="domain"))
> 
> ### universal block Kriging
> preCK_coalash <- preCKrige(newdata = coalash.domain, model = covmodel(modelname =
+     "exponential", mev = 1.023, nugget = 0, variance = 0.268,
+     scale = 1.907), pwidth = 16, pheight = 24)
> UK_coalash <- CKrige(formula = coalash ~ x, data = coalash,
+   locations = ~ x+y, object = preCK_coalash, method = 1)
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
checkRd: (-1) copCAR.Rd:40: Lost braces
    40 |        item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}
       |            ^
checkRd: (-1) copCAR.Rd:40: Lost braces
    40 |        item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}
       |                          ^
checkRd: (-1) condQestCopC.Rd:45: Lost braces; missing escapes or markup?
    45 | obtain the conditional qth quantile of Y_{n+1} given {Y1,...,Yn}.
       |                                          ^
checkRd: (-1) condQestCopC.Rd:45: Lost braces; missing escapes or markup?
    45 | obtain the conditional qth quantile of Y_{n+1} given {Y1,...,Yn}.
       |                                                      ^
checkRd: (-1) condQestCopC.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{condQestCopC} returns the conditional tao-th quantile of Y_{n+1} given {Y1,...,Yn}
       |                                                                  ^
checkRd: (-1) condQestCopC.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{condQestCopC} returns the conditional tao-th quantile of Y_{n+1} given {Y1,...,Yn}
       |                                                                              ^
checkRd: (-1) ComputeCope.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:57-61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DrawContour.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Draws the contour {f=c}.}
       |                          ^
checkRd: (-1) DrawContour.Rd:20: Lost braces; missing escapes or markup?
    20 | Draws the contour {f=c}.
       |                   ^
checkRd: (-1) cope.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getSurface.Rd:22: Lost braces
    22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
       |                                                                                                                                                                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘refresh_coronvirus.R’
Namespace in Imports field not imported from: ‘devtools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RColorBrewer’ ‘ggplot2’ ‘re2’ ‘rmarkdown’ ‘shinyWidgets’
  ‘shinydashboard’ ‘shinyjs’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘corrRect.hclust.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘corrBarplot.R’ ‘corrNetwork.R’
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘stats’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘jpeg’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘gstat’
  All declared Imports should be used.
File ‘covBM/libs/covBM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘lubridate’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘httr’ ‘stringr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘mapview’ ‘plotly’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘usethis’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘misc3d’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘coxphf-tidiers.R’
File ‘cpm/libs/cpm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘cpp11qpdf/libs/cpp11qpdf.so’:
  Found ‘_ZNSt3__14cerrE’, possibly from ‘std::cerr’ (C++)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘_ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘__vprintf_chk’, possibly from ‘vprintf’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘srandom’, possibly from ‘srandom’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘libqpdf/libstatqpdf.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘RcppProgress’
  All declared Imports should be used.
File ‘cqrReg/libs/cqrReg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) sharedat.Rd:23: Lost braces
    23 | \doi{10.7910/DVN/YXMQZM}{Harvard dataverse}
       |                         ^
File ‘credule/libs/credule.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘DT’
  All declared Imports should be used.
checkRd: (-1) normFit.Rd:39: Lost braces; missing escapes or markup?
    39 | {analytes}}
       | ^
checkRd: (-1) normPred.Rd:27: Lost braces
    27 | ode{standards}, \code{analytes}}
       |    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crop.R’ ‘helpers.R’
checkRd: (-1) confRegCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the constrained MLEs given beta_{0r}.}
       |                   ^
checkRd: (-1) confRegCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the constrained MLEs given beta_{0r}.}
       |                                                                                    ^
checkRd: (-1) confRegCCR.Rd:27: Lost braces; missing escapes or markup?
    27 | beta_{0r} in \code{paramVals}, which are those of interest, usually the ones
       |      ^
checkRd: (-1) confRegUCRandUCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the unconstrained MLEs given beta_{0r}.}
       |                   ^
checkRd: (-1) confRegUCRandUCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the unconstrained MLEs given beta_{0r}.}
       |                                                                                      ^
checkRd: (-1) confRegUCRandUCCR.Rd:27: Lost braces; missing escapes or markup?
    27 | beta_{0r} in \code{paramVals}, which are those of interest, usually the ones
       |      ^
File ‘crrSC/libs/crrSC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘helpers.R’
checkRd: (-1) cruts-package.Rd:21: Lost braces
    21 | section{Dependencies}{
       |        ^
checkRd: (-1) cruts-package.Rd:21-24: Lost braces
    21 | section{Dependencies}{
       |                      ^
checkRd: (-1) cruts-package.Rd:26: Lost braces
    26 | section{Citation}{
       |        ^
checkRd: (-1) cruts-package.Rd:26-28: Lost braces
    26 | section{Citation}{
       |                  ^
checkRd: (-1) cruts-package.Rd:30-32: Lost braces
    30 | references{
       |           ^
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘party’ ‘rhandsontable’ ‘rpart’
  ‘rpart.plot’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘party’ ‘rhandsontable’ ‘rpart’
  ‘rpart.plot’ ‘shiny’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘accessors.Rd’ ‘as-cubble.R’ ‘as_cubble.Rd’ ‘check-key.R’
    ‘climate-data.Rd’ ‘covid.Rd’ ‘cubble-attrs.R’ ‘cubble-class.R’
    ‘cubble-print.R’ ‘dplyr.R’ ‘dplyr.Rd’ ‘face-spatial-temporal.R’
    ‘face.Rd’ ‘glyph.R’ ‘glyph.Rd’ ‘make_spatial_sf.Rd’
    ‘make_temporal_tsibble.Rd’ ‘matching.R’ ‘matching.Rd’ ‘netcdf.R’
    ‘sf.R’ ‘test-data.Rd’ ‘tsibble.R’ ‘tsibble.Rd’ ‘unfold.R’ ‘unfold.Rd’
Namespace in Imports field not imported from: ‘pspearman’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘create_cure_dataframe.R’ ‘cure_plot.R’ ‘resample_residuals.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_curriculum_graph.R’
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
checkRd: (-1) fit.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.Rd:39: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘titanic’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘d3TreeFunctions.R’
checkRd: (-1) fpiter.Rd:55-58: Lost braces
    55 |     \code{tol}{  A small, positive scalar that determines when iterations
       |               ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
    60 |     \code{maxiter}{  An integer denoting the maximum limit on the number of
       |                   ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
    63 |     \code{trace}{  A logical variable denoting whether some of the intermediate
       |                 ^
checkRd: (-1) formatScientificTeX.Rd:33: Lost braces; missing escapes or markup?
    33 | function will return  " 3.0\\\\times 10^{2}"
       |                                         ^
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
File ‘DALY/libs/DALY.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘foreach’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘drwho_directors.Rd’ ‘drwho_episodes.Rd’ ‘drwho_writers.Rd’
    ‘torchwood_directors.Rd’ ‘torchwood_episodes.Rd’
    ‘torchwood_writers.Rd’
Namespaces in Imports field not imported from:
  ‘jsonlite’ ‘methods’
  All declared Imports should be used.
checkRd: (-1) plot.mleBb.Rd:48: Lost braces
    48 |   \ code{size} is extracted from argument \code{x}.
       |         ^
checkRd: (-1) value_missing_table.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) value_missing_table.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘knitr’ ‘tidyverse’ ‘vctrs’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘softImpute’
  All declared Imports should be used.
checkRd: (-1) CI_mc.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{i}{the row index of the interest entry X_{i,j}}
       |                                                ^
checkRd: (-1) CI_mc.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{j}{the row index of the interest entry X_{i,j}}
       |                                                ^
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘html5’
  All declared Imports should be used.
dc3net: no visible global function definition for ‘updateGraph’
Undefined global functions or variables:
  updateGraph
checkRd: (-1) data.Rd:11: Lost braces
    11 | \doi{10.1007/s40258-021-00647-3}{DOI}
       |                                 ^
Namespaces in Imports field not imported from:
  ‘MASS’ ‘qpdf’
  All declared Imports should be used.
checkRd: (-1) detectAgeInterval.Rd:10: Lost braces
    10 | \item{Dat}{a \code{data.frame} containing a column called \code{Age}, or code{age}.}
       |                                                                              ^
checkRd: (-1) detectSex.Rd:10: Lost braces
    10 | \item{Dat}{a \code{data.frame} containing a column called \code{Sex}, or code{sex}.}
       |                                                                              ^
checkRd: (-1) ggbgetAgesFit.Rd:28: Lost braces
    28 | code{\link{ggbChooseAges}}
       |     ^
Namespace in Imports field not imported from: ‘shinydisconnect’
  All declared Imports should be used.
checkRd: (-1) deconv.Rd:85: Lost braces; missing escapes or markup?
    85 |     \code{tg}, std. error of \eqn{g}, \eqn{G} (the cdf of {g}),
       |                                                           ^
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
checkRd: (-1) deepNN-package.Rd:18: Lost braces
    18 | section{Dependencies}{
       |        ^
checkRd: (-1) deepNN-package.Rd:18-21: Lost braces
    18 | section{Dependencies}{
       |                      ^
checkRd: (-1) deepNN-package.Rd:23: Lost braces
    23 | section{Citation}{
       |        ^
checkRd: (-1) deepNN-package.Rd:23-25: Lost braces
    23 | section{Citation}{
       |                  ^
checkRd: (-1) deepNN-package.Rd:27-38: Lost braces
    27 | references{
       |           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘defineOptions-package.Rd’ ‘define_option.Rd’ ‘parse_with_defs.Rd’
    ‘summary.parsed_result.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api.R’ ‘category_blur.R’ ‘deident.R’
Undeclared package ‘viridisLite’ in Rd xrefs
Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs
Namespaces in Imports field not imported from:
  ‘knitr’ ‘shinyBS’ ‘shinyMatrix’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Caswell.R’
checkRd: (-1) kin.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:53-61: Lost braces
    53 | {\itemize{
       | ^
checkRd: (-1) kin.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:56-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:59-67: Lost braces
    59 | {\itemize{
       | ^
checkRd: (-1) kin2sex.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘DT’ ‘DiagrammeR’ ‘bslib’ ‘here’ ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘datasets’
  All declared Imports should be used.
Undeclared packages ‘ineq’, ‘randtests’, ‘Hmisc’, ‘plotrix’, ‘caret’, ‘pcaPP’, ‘polycor’, ‘lmtest’, ‘car’, ‘gmp’, ‘vcdExtra’, ‘chron’, ‘coin’, ‘caTools’, ‘forecast’, ‘sfsmisc’, ‘vcd’, ‘areaplot’, ‘corrgram’, ‘UsingR’, ‘memisc’, ‘gtools’, ‘BSDA’, ‘prettyR’, ‘robustHD’ in Rd xrefs
Unknown package ‘prettyR’ in Rd xrefs
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_template_srv.R’
Running examples in ‘detourr-Ex.R’ failed
The error most likely occurred in:

> ### Name: detour
> ### Title: Initiate a detour visualisation
> ### Aliases: detour
> 
> ### ** Examples
> 
> detour(tourr::flea, tour_aes(projection = -species, colour = species)) |>
+   tour_path(grand_tour(3), fps = 60) |>
+   show_scatter(alpha = 0.7, axes = FALSE)
Error in unclass(x)[i, j, k, drop = FALSE] : 
  incorrect number of dimensions
Calls: show_scatter ... <Anonymous> -> apply -> array -> [ -> [.history_array
Execution halted
Namespace in Imports field not imported from: ‘RColorBrewer’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AIC.dglars.Rd:47: Lost braces
    47 | \item{comp}{the measures of model complexity used to compute the measure of goodness-of-fit. It is equal to \code{npar} when code{complexity = "df"};}
       |                                                                                                                                  ^
checkRd: (-1) dglars.Rd:258: Lost braces
   258 |                 \item{\code{7}}{maximum number of solution points ('code{np}') reached.}
       |                                                                         ^
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
checkRd: (-1) define.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘R6’ ‘dplyr’ ‘purrr’
  All declared Imports should be used.
File ‘diffIRT/libs/diffIRT.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) sensitivitySamplerManual-DPMech-function-numeric-numeric-numeric-method.Rd:25: Lost braces
    25 | \item{k}{order statistic index in {1,...,\code{m}}.}
       |                                   ^
checkRd: (-1) sensitivitySamplerManual-DPMechNumeric-function-numeric-numeric-numeric-method.Rd:25: Lost braces
    25 | \item{k}{order statistic index in {1,...,\code{m}}.}
       |                                   ^
checkRd: (-1) sensitivitySamplerManual.Rd:22: Lost braces
    22 | \item{k}{order statistic index in {1,...,\code{m}}.}
       |                                   ^
checkRd: (-1) simulate_diff_tables.Rd:72: Lost braces; missing escapes or markup?
    72 |   {The Sharma-Song test} {\code{\link[DiffXTables]{sharma.song.test}}}
       |   ^
checkRd: (-1) simulate_diff_tables.Rd:74: Lost braces; missing escapes or markup?
    74 |   {The comparative chi-squared test} {\code{\link[DiffXTables]{cp.chisq.test}}}
       |   ^
checkRd: (-1) simulate_diff_tables.Rd:76: Lost braces; missing escapes or markup?
    76 |   {The heterogeneity test} {\code{\link[DiffXTables]{heterogeneity.test}}}
       |   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dilp_functions.R’
checkRd: (-1) DIME.Rd:272: Lost braces; missing escapes or markup?
   272 | \item{name}{the name of the model {"GNG", "iNUDGE","NUDGE"} where
       |                                   ^
Namespace in Imports field not imported from: ‘Biostrings’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘readr’
  All declared Imports should be used.
checkRd: (-1) mc_attitudes.Rd:52: Lost braces
    52 | P\'{a}ez, A. (2013). Mapping travelers’ attitudes: does space matter?. Journal of Transport Geography, 26, 117-125. (https://doi.org/10.1016/j.jtrangeo.2012.09.002)
       |    ^
checkRd: (-1) mc_commute.csv.Rd:49: Lost braces
    49 | Whalen, K. E., P\'{a}ez, A., & Carrasco, J. A. (2013). Mode choice of university students commuting to school and the role of active travel. Journal of Transport Geography, 31, 132-142. (https://doi.org/10.1016/j.jtrangeo.2013.06.008)
       |                   ^
checkRd: (-1) mc_commute_long.Rd:74: Lost braces
    74 | Whalen, K. E., P\'{a}ez, A., & Carrasco, J. A. (2013). Mode choice of university students commuting to school and the role of active travel. Journal of Transport Geography, 31, 132-142. (https://doi.org/10.1016/j.jtrangeo.2013.06.008)
       |                   ^
checkRd: (-1) mc_commute_wide.Rd:87: Lost braces
    87 | Whalen, K. E., P\'{a}ez, A., & Carrasco, J. A. (2013). Mode choice of university students commuting to school and the role of active travel. Journal of Transport Geography, 31, 132-142. (https://doi.org/10.1016/j.jtrangeo.2013.06.008)
       |                   ^
checkRd: (-1) mc_modality.Rd:50: Lost braces
    50 | Lavery, T., P\'{a}ez, A., & Kanaroglou, P.S. (2013). Driving out of choices: An investigation of transport modality in a university sample. Transportation Research Part A: Policy and Practice, 57:37-46 (https://doi.org/10.1016/j.tra.2013.09.010)
       |                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dev_package.R’
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘rlang’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘truncnorm’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘ggmulti’ ‘loon’ ‘loon.data’ ‘loon.ggplot’ ‘loon.shiny’ ‘loon.tourr’
  ‘stats’ ‘zenplots’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
checkRd: (-1) dca.Rd:24: Lost braces; missing escapes or markup?
    24 | \eqn{neglinks_{ij} = 1} means chunklet \code{i} and chunklet {j}
       |                                                              ^
checkRd: (-1) dca.Rd:26: Lost braces; missing escapes or markup?
    26 | \eqn{neglinks_{ij} = 0} means chunklet \code{i} and chunklet {j}
       |                                                              ^
checkRd: (-1) rca.Rd:57: Lost braces; missing escapes or markup?
    57 |       e.g. {1, 3, 7} and {4, 6}, might belong to the
       |            ^
checkRd: (-1) rca.Rd:57: Lost braces; missing escapes or markup?
    57 |       e.g. {1, 3, 7} and {4, 6}, might belong to the
       |                          ^
checkRd: (-1) scale_color_dMod.Rd:10: Lost braces
    10 | \item{...}{arguments goint to code{scale_color_manual()}}
       |                                   ^
checkRd: (-1) scale_fill_dMod.Rd:10: Lost braces
    10 | \item{...}{arguments goint to code{scale_color_manual()}}
       |                                   ^
checkRd: (-1) trust.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:107-108: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:109-110: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:111-112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:113-114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:115-122: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:123-126: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:127: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:128-131: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:132-133: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:134-135: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:136-138: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:139-141: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) setCPT.O.Rd:85: Lost braces; missing escapes or markup?
    85 | statespace {0,1,2}, which this is *not* checked anywhere. Thus, if
       |            ^
checkRd: (-1) beetle.Rd:13: Lost braces; missing escapes or markup?
    13 |     \item{\code{x}}{dose (log base 10 CS2mgl^{-1})}
       |                                              ^
Namespaces in Imports field not imported from:
  ‘DT’ ‘DoseFinding’ ‘Rsolnp’ ‘ggplot2’ ‘kableExtra’ ‘knitr’
  ‘latticeExtra’ ‘purrr’ ‘readxl’ ‘shinyBS’ ‘shinyWidgets’ ‘shinyjs’
  ‘stringr’ ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘tidyr’ ‘tidyverse’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘R6’ ‘dplyr’ ‘ggplot2’ ‘nloptr’
  All declared Imports should be used.
checkRd: (-1) EDcomp.Rd:88: Escaped LaTeX specials: \&
checkRd: (-1) LL.4.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) W4.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) algae.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) anova.drc.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) deguelin.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) gompertz.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) hatvalues.drc.Rd:43: Lost braces
    43 |   emph{Generalized Linear Models}, 
       |       ^
checkRd: (-1) hatvalues.drc.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) llogistic.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) modelFit.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) weibull1.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) excalibur.Rd:18: Lost braces; missing escapes or markup?
    18 |     \item{\code{GR}}{a numeric vector: germination rates in d^{-1}}
       |                                                               ^
checkRd: (-1) festuca.Rd:16: Lost braces; missing escapes or markup?
    16 |     \item{\code{GR}}{a numeric vector: germination rates in d^{-1}}
       |                                                               ^
Found the following significant warnings:
  drogon/trantor/utils/TaskQueue.h:52:9: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result]
See ‘/data/gannet/ripley/R/packages/tests-clang/drogonR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘clang version 22.1.7 (https://github.com/llvm/llvm-project a255c1ed36a1d06f79bd2633ba9f8d900153007c)’
checkRd: (-1) popsize.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘mnormt’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘rJava’ ‘tools’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘v_fmt_to_type.R’
checkRd: (-1) DTDAcif.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) efron.petrosian.Rd:22: Lost braces
    22 |   \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                               ^
checkRd: (-1) lynden.Rd:21: Lost braces
    21 |    \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                                ^
checkRd: (-1) shen.Rd:24: Lost braces
    24 |   \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                               ^
checkRd: (-1) applied_crm.Rd:64: Lost braces; missing escapes or markup?
    64 | The empiric model is specified as F(d, beta) = d^{exp(beta)}. The logistic model is
       |                                                  ^
checkRd: (-1) Mena.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DTWUMI_1gap_imputation.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
File ‘dualtrees/libs/dualtrees.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘digest’ ‘dplyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘roxygen2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘heemod’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
checkRd: (-1) Produc.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.earlyR.Rd:34-46: Lost braces
    34 | if (require(incidence)) {
       |                         ^
Running ‘spelling.R’
  Running ‘testthat.R’ [14s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(earthdatalogin)
  > 
  > test_check("earthdatalogin")
  Saving _problems/test-edl_netrc-34.R
  [ FAIL 1 | WARN 1 | SKIP 11 | PASS 2 ]
  
  ══ Skipped tests (11) ══════════════════════════════════════════════════════════
  • On CRAN (9): 'test-edl_download.R:3:3', 'test-edl_download.R:24:3',
    'test-edl_download.R:45:3', 'test-edl_netrc.R:2:3', 'test-edl_search.R:3:3',
    'test-edl_set_token.R:2:3', 'test-list-nasa-stacs.R:2:3',
    'test-list-nasa-stacs.R:14:3', 'test-stac-collections_fetch.R:2:3'
  • Only works inside AWS US-West-2 (2): 'test-edl_s3.R:4:3',
    'test-edl_s3.R:15:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-edl_netrc.R:34:3'): netcdf access ──────────────────────────────
  Error: [rast] cannot open this file as a SpatRaster: /vsicurl/https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-protected/AVHRR_OI-NCEI-L4-GLOB-v2.1/20200115120000-NCEI-L4_GHRSST-SSTblend-AVHRR_OI-GLOB-v02.0-fv02.1.nc
  Backtrace:
      ▆
   1. ├─terra::rast(url, vsi = TRUE, drivers = driver) at test-edl_netrc.R:34:3
   2. └─terra::rast(url, vsi = TRUE, drivers = driver)
   3.   └─terra (local) .local(x, ...)
   4.     └─terra:::messages(r, "rast")
   5.       └─terra:::error(f, x@pntr$getError())
  
  [ FAIL 1 | WARN 1 | SKIP 11 | PASS 2 ]
  Error:
  ! Test failures.
  Execution halted
Namespace in Imports field not imported from: ‘igraph’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rprojroot’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘scales’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘qcr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ebase_plot.R’ ‘ebase_prep.R’
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘vignette_ecospat_package.Rmd’ using rmarkdown

Quitting from vignette_ecospat_package.Rmd:409-412 [ESM.EnsembleModeling]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `gzfile()`:
! invalid 'description' argument
---
Backtrace:
    x
 1. \-ecospat::ecospat.ESM.EnsembleModeling(...)
 2.   \-base::load(models.[i])
 3.     \-base::gzfile(file)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'vignette_ecospat_package.Rmd' failed with diagnostics:
invalid 'description' argument
--- failed re-building ‘vignette_ecospat_package.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette_ecospat_package.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rmisc’ ‘rlang’
  All declared Imports should be used.
checkRd: (-1) transformFitness.Rd:25: Lost braces; missing escapes or markup?
    25 | minimization (most others). This function computes a factor from {-1, 1} for
       |                                                                  ^
checkRd: (-1) read.edf.Rd:30: Lost braces
    30 | Kemp B., V\"{a}rri, A., Rosa, A.C., Nielsen, K.D. and Gade, J. (1992).
       |             ^
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘magrittr’ ‘tibble’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘reticulate’ ‘tensorflow’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘PCovR’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘progress’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘directory.R’ ‘facets.R’ ‘metadata.R’
Namespace in Imports field not imported from: ‘snow’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mathjaxr’
  All declared Imports should be used.
checkRd: (-1) fit_mean.Rd:54: Lost braces
    54 | \code{t_optims}{optimal parametrizations}
       |                ^
checkRd: (-1) fit_mean.Rd:55: Lost braces
    55 | \code{G_optims}{optimal rotations}
       |                ^
checkRd: (-1) fit_mean.Rd:56: Lost braces
    56 | \code{b_optims}{optimal scalings}
       |                ^
checkRd: (-1) fit_mean.Rd:57: Lost braces
    57 | \code{n_optims}{optimal re-normalization}
       |                ^
checkRd: (-1) fit_mean.Rd:58: Lost braces
    58 | \code{n_iter}{number of iterations until convergence}
       |              ^
checkRd: (-1) electData.Rd:16: Lost braces; missing escapes or markup?
    16 | Variables: \code{id}  = {identification number},
       |                         ^
checkRd: (-1) electData.Rd:17: Lost braces; missing escapes or markup?
    17 | \code{state} = {state}, \code{age} = age in years on a shifted scale (current age minus 70),
       |                ^
checkRd: (-1) summary.elect.Rd:25: Lost braces; missing escapes or markup?
    25 |  TRUE for output on start-state totals e_{r.} (for \code{S}>0)
       |                                          ^
Namespaces in Imports field not imported from:
  ‘distr’ ‘distrEllipse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘datasets’
  All declared Imports should be used.
checkRd: (-1) elo.run.Rd:80: Lost braces
    80 | \code{\link{score}}, \link{elo.run.helpers}{elo.run helpers}, \code{\link{elo.calc}},
       |                                            ^
File ‘elsa/libs/elsa.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
Licence stub is invalid DCF.
checkRd: (-1) macacaModels.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) macacaModels.Rd:10-11: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.character.emphatic.Rd’ ‘as_emphatic.Rd’ ‘as_html.Rd’
    ‘as_latex.Rd’ ‘as_svg.Rd’ ‘as_svg_anim.Rd’ ‘as_svg_group.Rd’
    ‘as_typst.Rd’ ‘hl.Rd’ ‘hl_adjust.Rd’ ‘is_emphatic.Rd’
    ‘knit_print.emphatic.Rd’ ‘print.emphatic.Rd’ ‘show_html.Rd’
    ‘write_xlsx.Rd’
checkRd: (-1) enetLTS-package.Rd:41: Lost braces; missing escapes or markup?
    41 |   \code{family="binomial"} should be a factor with two levels which is coded as \code{0} and {1}.
       |                                                                                              ^
checkRd: (-1) CTN.Rd:22: Lost braces; missing escapes or markup?
    22 | less memory. Genetic data consists of nucleotide data {A,T,C,G} and are usually saved
       |                                                       ^
Namespaces in Imports field not imported from:
  ‘Biostrings’ ‘DECIPHER’ ‘ggplot2’ ‘reshape2’ ‘usethis’
  All declared Imports should be used.
checkRd: (-1) metrics.Rd:124: Lost braces
   124 | Avg = 0.5 (sum | P_i - Q_i| + max{ | P_i - Q_i |})
       |                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘network.Rd’ ‘types.Rd’
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                           ^
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                                        ^
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tinytest’
  All declared Imports should be used.
checkRd: (-1) runSim.Rd:111: Lost braces
   111 | \ifelse{html}{\out{<i>r</i><sub>1</sub> = 1}}{{\eqn{r_1 = 1}}{r_1 = 1}} while the individual with the lowest phenotypic value
       |                                                              ^
checkRd: (-1) runSim.Rd:112: Lost braces
   112 | is given the rank \ifelse{html}{\out{<i>r<sub>n</sub></i> = <i>n</i>}}{{\eqn{r_n = n}}{r_n = n}}), the probability of an individual
       |                                                                                       ^
checkRd: (-1) runSim.Rd:120-122: Lost braces
   120 | }{
       |  ^
Namespace in Imports field not imported from: ‘xts’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘cubature’ ‘rootSolve’
  All declared Imports should be used.
checkRd: (-1) Tm.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:55-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:58-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:36-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:40-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:43-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:47-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:60-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:69-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:75-77: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘render_erd.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘erlang_c_app.R’
checkRd: (-1) ifa.Rd:16: Lost braces; missing escapes or markup?
    16 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then Sigma^{-1} 
       |                                                                         ^
checkRd: (-1) ifa.Rd:17: Lost braces; missing escapes or markup?
    17 | has the corresponding q-factor decomposition Sigma^{-1}=diag(phi)(I-theta theta')diag(phi), where theta is a mxq matrix and phi the vector of 
       |                                                    ^
checkRd: (-1) ifa.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{iSB}{m x q matrix (diag(Psi)+BB')^{-1}B.}
       |                                         ^
checkRd: (-1) isqrtfa.Rd:15: Lost braces; missing escapes or markup?
    15 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then the function returns a matrix Omega such that Sigma^{-1} = Omega Omega'. Equivalently,
       |                                                                                                                       ^
checkRd: (-1) enp.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enp.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘esem_cfa_syntax.R’
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data_cls.Rd:24: Lost braces
    24 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability 0.10 for
       |                    ^
checkRd: (-1) data_cls.Rd:24: Lost braces
    24 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability 0.10 for
       |                            ^
checkRd: (-1) data_reg.Rd:21: Lost braces
    21 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability given by
       |                    ^
checkRd: (-1) data_reg.Rd:21: Lost braces
    21 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability given by
       |                            ^
checkRd: (-1) FuzzyCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "fcm {ppclust}"
       |                                                       ^
checkRd: (-1) pamCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "pam {cluster}"
       |                                                       ^
Namespaces in Imports field not imported from:
  ‘forcats’ ‘rqPen’ ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘EnvStats’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘KMsurv’ ‘MLEcens’ ‘lubridate’ ‘msm’ ‘perm’
  All declared Imports should be used.
checkRd: (-1) fmgammagpd.Rd:183: Lost braces; missing escapes or markup?
   183 |  \item {nlumgammagpd} and {proflumgammagpd} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], sigmau, xi)}
       |                           ^
checkRd: (-1) fmgammagpdcon.Rd:181: Lost braces; missing escapes or markup?
   181 |  \item {nlumgammagpdcon} and {proflumgammagpdcon} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], xi)}
       |                              ^
checkRd: (-1) kernels.Rd:87: Lost braces
    87 | code{\link[evmix:kernels]{kd*}}  and \code{\link[evmix:kernels]{kp*}} give the
       |     ^
checkRd: (-1) ShapeDist.Rd:18: Lost braces; missing escapes or markup?
    18 | Procrustes distance provides a measure of coincidence of two point sets {xi} and {yi}, i=1..N. For this purpose the variance of point deviations is calculated at the optimal superposition of the sets. It allows to characterize the shape proximity of a given simplex to shape of a reference one.
       |                                                                         ^
checkRd: (-1) ShapeDist.Rd:18: Lost braces; missing escapes or markup?
    18 | Procrustes distance provides a measure of coincidence of two point sets {xi} and {yi}, i=1..N. For this purpose the variance of point deviations is calculated at the optimal superposition of the sets. It allows to characterize the shape proximity of a given simplex to shape of a reference one.
       |                                                                                  ^
Namespace in Imports field not imported from: ‘parallel’
  All declared Imports should be used.
checkRd: (-1) stop_rule.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘gamlss.dist’
  All declared Imports should be used.
checkRd: (-1) ccF.Rd:41: Lost braces
    41 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compare_benchmark_event.R’ ‘compare_benchmark_time.R’
Namespace in Imports field not imported from: ‘ggpmisc’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_fct_adjs.R’ ‘compute_fct_adjs.Rd’ ‘guess_measure_sets.R’
    ‘mutate_expecvar.R’ ‘mutate_expecvar.Rd’ ‘mutate_metrics.R’
    ‘mutate_metrics.Rd’ ‘summarise_measures.R’ ‘summarise_measures.Rd’
    ‘validators.R’
checkRd: (-1) MatIn.Rd:6: Lost braces
     6 | Computation of aggregation matrices for generalized interactions that are used in code{\link{extRC}} to estimate extended RC models.
       |                                                                                       ^
checkRd: (-1) plot.Rd:5: Lost braces
     5 | \description{It plots the output of code{\link{extRC}} function for a vector of lambda values.}
       |                                         ^
checkRd: (-1) print.Rd:5: Lost braces
     5 | \description{Given the output of code{\link{extRC}} function, it is written in a readable form.}
       |                                      ^
checkRd: (-1) summary.Rd:5: Lost braces
     5 | \description{Summary method for the output of code{\link{extRC}} function.}
       |                                                   ^
File ‘extremis/libs/extremis.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
checkRd: (-1) EEzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘GLARMA.R’ ‘GLARMA.Rd’ ‘INGARCH.R’ ‘INGARCH.Rd’ ‘fitted.GLARMA.Rd’
    ‘fitted.INGARCH.Rd’ ‘forecast.GLARMA.Rd’ ‘forecast.INGARCH.Rd’
    ‘glance.GLARMA.Rd’ ‘glance.INGARCH.Rd’ ‘residuals.GLARMA.Rd’
    ‘residuals.INGARCH.Rd’ ‘tidy.GLARMA.Rd’ ‘tidy.INGARCH.Rd’
Namespace in Imports field not imported from: ‘tsibbledata’
  All declared Imports should be used.
checkRd: (-1) fmCov.Rd:37: Lost braces; missing escapes or markup?
    37 | where, \code{alpha(i)} is the intercept, \code{f(t)} is a {K x 1} vector of 
       |                                                           ^
checkRd: (-1) plot.ffm.Rd:82: Lost braces; missing escapes or markup?
    82 | \item{las}{one of {0, 1, 2, 3} to set the direction of axis labels, same as
       |                   ^
checkRd: (-1) summary.ffm.Rd:39: Lost braces; missing escapes or markup?
    39 | Returned object is of class {summary.ffm}.
       |                             ^
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
checkRd: (-1) FADPclust.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) happy.Rd:14: Lost braces
    14 |                  code{Pretty happy} <  \code{Very happy}}
       |                      ^
checkRd: (-1) fra_sf.Rd:22: Lost braces; missing escapes or markup?
    22 | A map of France as {sf} object. Can be used as dataset or for maps
       |                    ^
File ‘falcon/libs/falcon.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
File ‘FastBandChol/libs/FastBandChol.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘grDevices’ ‘utils’
  All declared Imports should be used.
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                ^
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                     ^
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
checkRd: (-1) update_nhl_db.Rd:51-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_nhl_db.Rd:54-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_phf_db.Rd:51-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_phf_db.Rd:54-57: Lost braces in \itemize; meant \describe ?
Note: information on .o files is not available
File ‘FastRWeb/libs/null.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.