Packages required but not available: 'rcompanion', 'FSA', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Package required but not available: ‘ddpcr’

Packages suggested but not available for checking:
  'AnnotationHub', 'ExperimentHub', 'DMRcate', 'sva',
  'clusterProfiler', 'enrichplot', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpti9uKZ/ltx49c9910d57e23/data.frame2glmnet.matrix.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘plotly’

Packages suggested but not available for checking:
  'AnnotationDbi', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggpubr', 'ggraph', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emmanuel",
                    family = "Arnhold",
                    role = c("aut", "cre"),
                    email = "emmanuelarnhold@yahoo.com.br")
as necessary.
Maintainer: ‘Aaron McGarvey <amcgarvey271@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "McGarvey",
                    role = c("aut", "cre"),
                    email = "amcgarvey271@gmail.com")
as necessary.
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emmanuel",
                    family = "Arnhold",
                    role = c("aut", "cre"),
                    email = "emmanuelarnhold@yahoo.com.br")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'qs', 'readxlsb'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sdcTable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'censored', 'flexsurv', 'flexsurvcure', 'parsnip', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yuting Dai <forlynna@sjtu.edu.cn>’

Found the following (possibly) invalid file URI:
  URI: forlynna@sjtu.edu.cn
    From: man/easySVG.Rd
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘easyViz-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: easyViz
> ### Title: Easy Visualization of Conditional Effects from Regression Models
> ### Aliases: easyViz
> 
> ### ** Examples
> 
> #------------------------------------------
> # Load required packages
> #------------------------------------------
> 
> library(MASS)
> library(nlme)
> library(betareg)
> library(survival)
> library(lme4)
Loading required package: Matrix

Attaching package: ‘lme4’

The following object is masked from ‘package:nlme’:

    lmList

> library(glmmTMB)
Error in library(glmmTMB) : there is no package called ‘glmmTMB’
Execution halted
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qcr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'BIFIEsurvey', 'Hmisc', 'mice', 'car', 'miceadds', 'EffectLiteR',
  'eatGADS', 'janitor'

Package suggested but not available for checking: ‘weights’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ebase_plot.R’ ‘ebase_prep.R’
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michal Kolesár <kolesarmi@googlemail.com>’

The Description field contains
  and Plagborg-Møller (2020) <arXiv:2004.03448>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrea Rau <andrea.rau@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Rau",
                    role = c("aut", "cre"),
                    email = "andrea.rau@inra.fr")
as necessary.
Maintainer: ‘Gongyi Huang<53hgy@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Na",
                      family = "You",
                      role = "aut",
                      email = "youn@mail.sysu.edu.cn"),
               person(given = "Gongyi",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "53hgy@163.com"))
as necessary.
Packages required but not available: 'separationplot', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘"Hsiang Hao, Chen" <kbman1101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hsiang",
                      family = "Hao",
                      role = "aut"),
               person(family = "Chen",
                      role = "aut"),
               person(given = "\"Hsiang",
                      family = "Hao",
                      role = "cre"),
               person(family = "Chen\"",
                      role = "cre",
                      email = "kbman1101@gmail.com"))
as necessary.
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Francisco Rosales <francisco.rosales-marticorena@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francisco",
                      family = "Rosales",
                      role = c("aut", "cre"),
                      email = "francisco.rosales-marticorena@protonmail.com"),
               person(given = "Tatyana",
                      family = "Krivobokova",
                      role = "aut"),
               person(given = "Paulo",
                      family = "Serra.",
                      role = "aut"))
as necessary.

The Description field contains
  and "Klockmann" (2021) <arXiv:1812.06948> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘HDF5Array’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘drc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Garritt L. Page <page@stat.byu.edu>’

The Description field contains
  S; (2020) <arXiv:2012.11767>.  Both the parametric and semi-parametric
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘John P Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "P"),
                    family = "Nolan",
                    role = c("aut", "cre"),
                    email = "jpnolan@american.edu")
as necessary.
Package required but not available: ‘spatstat’

Package suggested but not available for checking: ‘dixon’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

Packages suggested but not available for checking:
  'car', 'DescTools', 'pryr', 'ipumsr', 'drc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Harvey <harvey@depauw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Harvey",
                    role = c("aut", "cre"),
                    email = "harvey@depauw.edu")
as necessary.
Maintainer: ‘Jennifer Hurley <hurlej2@rpi.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gaurav Bansal <gaurbans@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gaurav",
                    family = "Bansal",
                    role = c("aut", "cre"),
                    email = "gaurbans@gmail.com")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Koen Hufkens <koen.hufkens@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'ggpubr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mregions2’

Packages suggested but not available for checking: 'robis', 'ridigbio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sna’

Packages suggested but not available for checking: 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggmcmc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘ecodive-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp5cAc14/file4e9e86fafabe0/wave_hedges.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Rodolfo Souza <rodolfomssouza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rodolfo",
                    family = "Souza",
                    role = c("aut", "cre"),
                    email = "rodolfomssouza@gmail.com")
as necessary.
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karline",
                      family = "Soetaert",
                      role = c("aut", "cre"),
                      email = "karline.soetaert@nioz.nl"),
               person(given = c("Peter", "MJ"),
                      family = "Herman",
                      role = "aut",
                      email = "peter.herman@nioz.nl"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: examples
    From: inst/doc/ecolMod.pdf
Maintainer: ‘Hugo Salinas <hugosal@comunidad.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

Package suggested but not available for checking: ‘cmdstanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

The Description field contains
  <arXiv:1708.01242>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘bipartite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ecoCopula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘smacof’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘ecorisk-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_heatmap
> ### Title: Generate a Heatmap Overview of Individual Risk Scores,
> ###   Aggregated Risk Scores, and Overall Ecosystem Risk
> ### Aliases: plot_heatmap
> 
> ### ** Examples
> 
> ### Demo with output data from the risk() and aggregate_risk() functions
> #   based on expert scores.
> 
> # Using default settings for the overall risk scores and associated uncertainty
> # scores (i.e. in this case, combined across both types)
> p_heat <- plot_heatmap(
+   risk_scores = ex_output_risk_expert,
+   aggregated_scores = ex_output_aggregate_risk_expert
+ )
Error: Package "ggpubr" must be installed to use this function.
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
model_exposure 4.618  0.211   5.814
Error(s) in re-building vignettes:
  ...
--- re-building ‘ecorisk.Rmd’ using rmarkdown

Quitting from ecorisk.Rmd:718-723 [model diagnostics sensitivity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package "mgcViz" must be installed to use this function.
---
Backtrace:
    ▆
 1. └─ecorisk::plot_diagnostic_sensitivity(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ecorisk.Rmd' failed with diagnostics:
Package "mgcViz" must be installed to use this function.
--- failed re-building ‘ecorisk.Rmd’

SUMMARY: processing the following file failed:
  ‘ecorisk.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'biomod2', 'Hmisc'

Package suggested but not available for checking: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggnetwork’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ecoCopula’

Packages suggested but not available for checking:
  'car', 'DHARMa', 'GGally', 'glmmTMB', 'phylobase', 'phylosignal'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Antoine Bagnaro <antoine.bagnaro@wanadoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Bagnaro",
                    role = c("aut", "cre"),
                    email = "antoine.bagnaro@wanadoo.fr")
as necessary.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin L Hlina <benjamin.hlina@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jerome Guitton <jerome.guitton@agrocampus-ouest.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.",
                      family = "Guitton",
                      role = "aut"),
               person(given = "M.",
                      family = "Colleter",
                      role = "aut"),
               person(given = "P.",
                      family = "Gatti",
                      role = "aut"),
               person(given = "D.",
                      family = "Gascuel",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Guitton",
                      role = "cre",
                      email = "jerome.guitton@agrocampus-ouest.fr"))
as necessary.
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pankaj Das <pankaj.das2@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pankaj",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "pankaj.das2@icar.gov.in",
                    comment = c(ORCID = "0000-0003-1672-2502"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘eCV_vignette.Rmd’ using rmarkdown

Quitting from eCV_vignette.Rmd:53-55 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library("tidyverse")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'eCV_vignette.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘eCV_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘eCV_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Yongbo Gan <yongbogan@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yongbo",
                      family = "Gan",
                      role = c("aut", "cre"),
                      email = "yongbogan@whu.edu.cn"),
               person(given = "Zhijian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Wei",
                      family = "Mei",
                      role = "aut"))
as necessary.
Maintainer: ‘Fengru Wang <wangfr@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fengru",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wangfr@whu.edu.cn"),
               person(given = "Yongbo",
                      family = "Gan",
                      role = "aut"),
               person(given = "Zhijian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Wei",
                      family = "Mei",
                      role = "aut"))
as necessary.
Packages required but not available: 'car', 'dae', 'predictmeans'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flextable', 'ggpubr', 'janitor', 'xgxr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

Packages suggested but not available for checking:
  'crosstable', 'janitor', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Andreas Henelius <andreas.henelius@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Henelius",
                    role = c("aut", "cre"),
                    email = "andreas.henelius@iki.fi")
as necessary.
checkRd: (-1) read.edf.Rd:30: Lost braces
    30 | Kemp B., V\"{a}rri, A., Rosa, A.C., Nielsen, K.D. and Gade, J. (1992).
       |             ^
Package required but not available: ‘tidyquant’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Glenna Nightingale <glenna.evans@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Glenna",
                    family = "Nightingale",
                    role = c("aut", "cre"),
                    email = "glenna.evans@gmail.com")
as necessary.
Running examples in ‘editbl-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: e_rows_insert.tbl_dbi
> ### Title: rows_insert implementation for DBI backends.
> ### Aliases: e_rows_insert.tbl_dbi
> 
> ### ** Examples
> 
> library(dplyr)

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> 
> # Set up a test table
> conn <- DBI::dbConnect(RSQLite::SQLite(), ":memory:")
> artists_df <- data.frame(
+          ArtistId = c(1,2),
+          Name = c("AC/DC", "The Offspring")
+ )
> DBI::dbWriteTable(conn, "Artist", artists_df)     
>  
> # Insert new row
> artists <- tbl(conn, "Artist")
Error in check_dbplyr() : 
  The package "dbplyr" is required to communicate with database backends.
Calls: tbl ... tbl.DBIConnection -> check_dbplyr -> check_installed
Execution halted
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(editbl)
  > 
  > test_check("editbl")
  Saving _problems/test-tbl-9.R
  Saving _problems/test-tbl_dbi-9.R
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 61 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-tbl.R:9:1'): (code run outside of `test_that()`) ───────────────
  <rlib_error_package_not_found/rlang_error/error/condition>
  Error in `check_dbplyr()`: The package "dbplyr" is required to communicate with database backends.
  Backtrace:
      ▆
   1. ├─dplyr::tbl(conn, "test") at test-tbl.R:9:1
   2. └─dplyr:::tbl.DBIConnection(conn, "test")
   3.   └─dplyr::check_dbplyr()
   4.     └─rlang::check_installed("dbplyr", "to communicate with database backends.")
  ── Error ('test-tbl_dbi.R:9:1'): (code run outside of `test_that()`) ───────────
  <rlib_error_package_not_found/rlang_error/error/condition>
  Error in `check_dbplyr()`: The package "dbplyr" is required to communicate with database backends.
  Backtrace:
      ▆
   1. ├─dplyr::tbl(conn, "test") at test-tbl_dbi.R:9:1
   2. └─dplyr:::tbl.DBIConnection(conn, "test")
   3.   └─dplyr::check_dbplyr()
   4.     └─rlang::check_installed("dbplyr", "to communicate with database backends.")
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 61 ]
  Error:
  ! Test failures.
  Warning message:
  call dbDisconnect() when finished working with a connection 
  Execution halted
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'OCNet', 'rivnet', 'BayesianTools', 'DHARMa'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘EDNE.EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘EDNE.EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘EDNE.EQ.dissolution.profiles.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Package required but not available: ‘opGMMassessment’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'Dire', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vanesa Jorda <jordav@unican.es>’

Found the following (possibly) invalid file URIs:
  URI: www.educationdata.unican.es
    From: man/ineq_female15a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_female25a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_male15a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_male25a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_total15a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_total25a.Rd
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggpubr', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Packages required but not available: 'keras', 'TSdeeplearning'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vipavee Trivittayasil <vipavee.tri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vipavee",
                    family = "Trivittayasil",
                    role = c("aut", "cre"),
                    email = "vipavee.tri@gmail.com")
as necessary.
Package required but not available: ‘ddpcr’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Navarro-Gonzalez <david.navarro@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Navarro-Gonzalez",
                      role = c("aut", "cre"),
                      email = "david.navarro@urv.cat"),
               person(given = "Urbano",
                      family = "Lorenzo-Seva",
                      role = "aut"))
as necessary.
Maintainer: ‘Guangjian Zhang <gzhang3@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guangjian",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "gzhang3@nd.edu"),
               person(given = "Ge",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Minami",
                      family = "Hattori",
                      role = "aut"),
               person(given = "Lauren",
                      family = "Trichtinger",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘eff2-doc.Rmd’ using rmarkdown

Quitting from eff2-doc.Rmd:22-26 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qgraph'
---
Backtrace:
    ▆
 1. └─base::library(qgraph)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'eff2-doc.Rmd' failed with diagnostics:
there is no package called 'qgraph'
--- failed re-building ‘eff2-doc.Rmd’

SUMMARY: processing the following file failed:
  ‘eff2-doc.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘anovaES.Rmd’ using rmarkdown
--- finished re-building ‘anovaES.Rmd’

--- re-building ‘convert_p_OR_RR.Rmd’ using rmarkdown
--- finished re-building ‘convert_p_OR_RR.Rmd’

--- re-building ‘convert_r_d_OR.Rmd’ using rmarkdown
--- finished re-building ‘convert_r_d_OR.Rmd’

--- re-building ‘effectsize.Rmd’ using rmarkdown
--- finished re-building ‘effectsize.Rmd’

--- re-building ‘effectsize_API.Rmd’ using rmarkdown
--- finished re-building ‘effectsize_API.Rmd’

--- re-building ‘from_test_statistics.Rmd’ using rmarkdown

Quitting from from_test_statistics.Rmd:234-244 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `emmeans()`:
! could not find function "emmeans"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'from_test_statistics.Rmd' failed with diagnostics:
could not find function "emmeans"
--- failed re-building ‘from_test_statistics.Rmd’

--- re-building ‘interpret.Rmd’ using rmarkdown
--- finished re-building ‘interpret.Rmd’

--- re-building ‘standardized_differences.Rmd’ using rmarkdown
--- finished re-building ‘standardized_differences.Rmd’

--- re-building ‘statistical_power.Rmd’ using rmarkdown
--- finished re-building ‘statistical_power.Rmd’

--- re-building ‘xtabs.Rmd’ using rmarkdown
--- finished re-building ‘xtabs.Rmd’

SUMMARY: processing the following file failed:
  ‘from_test_statistics.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Isabella Giammusso <isabella.giammusso@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Isabella",
                    family = "Giammusso",
                    role = c("aut", "cre"),
                    email = "isabella.giammusso@unipa.it")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘functions-supported-by-effects.Rnw’ using knitr
Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

--- finished re-building ‘functions-supported-by-effects.Rnw’

--- re-building ‘partial-residuals.Rnw’ using knitr
--- finished re-building ‘partial-residuals.Rnw’

--- re-building ‘predictor-effects-gallery.Rnw’ using knitr

Quitting from predictor-effects-gallery.Rnw:95-101 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'car'
---
Backtrace:
    x
 1. \-base::library(car)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'predictor-effects-gallery.Rnw' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘predictor-effects-gallery.Rnw’

SUMMARY: processing the following file failed:
  ‘predictor-effects-gallery.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Maintainer: ‘Wim Van der Elst <Wim.vanderelst@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wim",
                      family = "Van der Elst",
                      role = c("aut", "cre"),
                      email = "wim.vanderelst@gmail.com"),
               person(given = c("Ariel", "Alonso", "&", "Geert"),
                      family = "Molenberghs",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiao-Jun Mao <maoxj.ki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mu-Fa",
                      family = "Chen",
                      role = "aut",
                      email = "mfchen@bnu.edu.cn"),
               person(given = "Xiao-Jun",
                      family = "Mao",
                      role = "cre",
                      email = "maoxj.ki@gmail.com"))
as necessary.
Maintainer: ‘Chris Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Packages required but not available:
  'GGally', 'ggpubr', 'qgraph', 'semPlot', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘EGRET’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dataRetrieval’

Package suggested but not available for checking: ‘EGRETci’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘eha.Rmd’ using rmarkdown
--- finished re-building ‘eha.Rmd’

--- re-building ‘gompertz.Rmd’ using rmarkdown
--- finished re-building ‘gompertz.Rmd’

--- re-building ‘parametric.Rmd’ using rmarkdown
--- finished re-building ‘parametric.Rmd’

--- re-building ‘tpchreg.Rmd’ using rmarkdown

Quitting from tpchreg.Rmd:102-108 [glmbasefig]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/Rtmp6ESv1I/file67f8c4f8fa675'
---
Backtrace:
    ▆
 1. ├─base::plot(...)
 2. └─graphics::plot.default(...)
 3.   └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tpchreg.Rmd' failed with diagnostics:
could not open file '/tmp/Rtmp6ESv1I/file67f8c4f8fa675'
--- failed re-building ‘tpchreg.Rmd’

--- re-building ‘parametric1.Rnw’ using Sweave
--- finished re-building ‘parametric1.Rnw’

SUMMARY: processing the following file failed:
  ‘tpchreg.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ian Overton <I.Overton@qub.ac.uk>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘EHR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Logistf
> ### Title: Firth's penalized-likelihood logistic regression with more
> ###   decimal places of p-value than 'logistf' function in the R package
> ###   'logistf'
> ### Aliases: Logistf
> 
> ### ** Examples
> 
> data(dataPheWAS)
> fit <- Logistf(X264.3 ~ exposure + age + race + gender, data=dd)
Error: Logistf requires the logistf package, please install it.
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘directory.R’ ‘facets.R’ ‘metadata.R’
Maintainer: ‘Miguel Porto <mpbertolo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/miguel-porto/eicm
which should likely be
  https://github.com/miguel-porto/eicm/issues
instead.
Maintainer: ‘Jose M. Pavía <jose.m.pavia@uv.es>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/einops.Rcheck/00install.out’ for details.
Maintainer: ‘Michael Kellermann <mrkellermann@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olivia",
                      family = "Lau",
                      role = "aut",
                      email = "olivia.lau@post.harvard.edu"),
               person(given = c("Ryan", "T."),
                      family = "Moore",
                      role = "aut",
                      email = "rtm@american.edu"),
               person(given = "Michael",
                      family = "Kellermann",
                      role = c("aut", "cre"),
                      email = "mrkellermann@gmail.com"))
as necessary.
Maintainer: ‘James Honaker <zelig.zee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gary",
                      family = "King",
                      role = "aut",
                      email = "king@harvard.edu"),
               person(given = "Molly",
                      family = "Roberts",
                      role = "aut",
                      email = "molly.e.roberts@gmail.com"),
               person(given = "James",
                      family = "Honaker",
                      role = "cre",
                      email = "zelig.zee@gmail.com"))
as necessary.
Maintainer: ‘Okan Bulut <bulut@ualberta.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mehmet", "Hakan"),
                      family = "Satman",
                      role = c("aut", "cre"),
                      email = "mhsatman@istanbul.edu.tr",
                      comment = "Ph.D."),
               person(given = "Erkin",
                      family = "Diyarbakirlioglu",
                      role = "aut",
                      comment = "Ph.D."))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpWwzuu5/Rf76e9870844263': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Package required but not available: ‘ggiraphExtra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hyukpyo Hong <hphong@kaist.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyukpyo",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "hphong@kaist.ac.kr"),
               person(given = "Boseung",
                      family = "Choi",
                      role = "aut"),
               person(given = c("Jae", "Kyoung"),
                      family = "Kim",
                      role = "aut"))
as necessary.
Maintainer: ‘Guo-You Lan <jj6020770416jj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsin-wen",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "hwchang@stat.sinica.edu.tw")
as necessary.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lisa Steyer <lisa.steyer@hu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lisa",
                    family = "Steyer",
                    role = c("aut", "cre"),
                    email = "lisa.steyer@hu-berlin.de")
as necessary.

The Description field contains
  <doi:10.1111/biom.13706>) and Steyer et al. (2023, <arXiv:2305.02075>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pi Guo <guopi.01@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pi",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "guopi.01@163.com")
as necessary.
Maintainer: ‘Manuel Pfeuffer <manuel.pfeuffer@hu-berlin.de>’

The Description field contains
  <doi:10.1111/biom.13706>. See Stöcker et. al. (2022) <arXiv:2203.10522>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘sparseFLMM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hui Zou <zouxx019@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Zou",
                      role = c("aut", "cre"),
                      email = "zouxx019@umn.edu"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut",
                      email = "hastie@stanford.edu"))
as necessary.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Willem M. van der Wal <willem@vanderwalresearch.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Willem", "M."),
                    family = "van der Wal",
                    role = c("aut", "cre"),
                    email = "willem@vanderwalresearch.com")
as necessary.
Maintainer: ‘Ardo van den Hout <Ardo.vandenHout@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ardo",
                      family = "van den Hout",
                      role = c("aut", "cre"),
                      email = "ardo.vandenhout@ucl.ac.uk"),
               person(given = c("Mei", "Sum"),
                      family = "Chan",
                      role = "aut"))
as necessary.
checkRd: (-1) electData.Rd:16: Lost braces; missing escapes or markup?
    16 | Variables: \code{id}  = {identification number},
       |                         ^
checkRd: (-1) electData.Rd:17: Lost braces; missing escapes or markup?
    17 | \code{state} = {state}, \code{age} = age in years on a shifted scale (current age minus 70),
       |                ^
checkRd: (-1) summary.elect.Rd:25: Lost braces; missing escapes or markup?
    25 |  TRUE for output on start-state totals e_{r.} (for \code{S}>0)
       |                                          ^
Maintainer: ‘Geoff Hing <geoffhing@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Geoff",
                    family = "Hing",
                    role = c("aut", "cre"),
                    email = "geoffhing@gmail.com")
as necessary.

The Description field contains
  (https://github.com/newsdev/elex/), a Python package and command line
Please enclose URLs in angle brackets (<...>).
Package required but not available: ‘nhdplusTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chris Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Author field differs from that derived from Authors@R
  Author:    ‘Marwan El Homsi [aut, cre, cph] (<https://orcid.org/0000-0002-5782-6757>, Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France.), Isabella Annesi-Maesano [ctb, ths, fnd] (<https://orcid.org/0000-0002-6340-9300>, Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France., Department of Allergic and Respiratory Diseases, Montpellier University Hospital, Montpellier.)’
  Authors@R: ‘Marwan El Homsi [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-5782-6757>, affiliation: Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France.), Isabella Annesi-Maesano [ctb, ths, fnd] (ORCID: <https://orcid.org/0000-0002-6340-9300>, affiliation1: Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France., affiliation2: Department of Allergic and Respiratory Diseases, Montpellier University Hospital, Montpellier.)’
Maintainer: ‘Shinichiro Tomizono <cowares@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shinichiro",
                    family = "Tomizono",
                    role = c("aut", "cre"),
                    email = "cowares@gmail.com")
as necessary.
Maintainer: ‘Duncan Murdoch <murdoch.duncan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Murdoch",
                      role = c("aut", "cre"),
                      email = "murdoch.duncan@gmail.com"),
               person(given = c("E.", "D."),
                      family = "Chow",
                      role = "aut",
                      comment = "porting to R by Jesus M. Frias Celayeta"))
as necessary.
Maintainer: ‘Marko Palangetic <marko.palangetic@ugent.be>’

The Description field contains
  et al. (2021) <arXiv:2011.12560v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Christof Neumann <christofneumann1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christof",
                    family = "Neumann",
                    role = c("aut", "cre"),
                    email = "christofneumann1@gmail.com")
as necessary.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) elo.run.Rd:80: Lost braces
    80 | \code{\link{score}}, \link{elo.run.helpers}{elo.run helpers}, \code{\link{elo.calc}},
       |                                            ^
Package required but not available: ‘EloRating’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘elsa.Rmd’ using rmarkdown

Quitting from elsa.Rmd:116-152 [lisa]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/RtmpO2Q83B/file8b3526294422e'
---
Backtrace:
    ▆
 1. ├─base::plot(r, main = "DEM: a continuous raster map")
 2. └─raster::plot(r, main = "DEM: a continuous raster map")
 3.   └─raster (local) .local(x, y, ...)
 4.     └─raster:::.plotraster2(...)
 5.       └─raster:::.rasterImagePlot(...)
 6.         ├─base::plot(...)
 7.         ├─base::plot(...)
 8.         └─graphics::plot.default(...)
 9.           └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'elsa.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpO2Q83B/file8b3526294422e'
--- failed re-building ‘elsa.Rmd’

SUMMARY: processing the following file failed:
  ‘elsa.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Wassim Youssef <Wassim.G.Youssef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Julien",
                      family = "Tomas",
                      role = "aut"),
               person(given = "Frederic",
                      family = "Planchet",
                      role = "aut"),
               person(given = "Wassim",
                      family = "Youssef",
                      role = c("aut", "cre"),
                      email = "wassim.g.youssef@gmail.com"))
as necessary.
Package required but not available: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joan Garriga <jgarriga@ceab.csic.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joan",
                      family = "Garriga",
                      role = c("aut", "cre"),
                      email = "jgarriga@ceab.csic.es"),
               person(given = c("John", "R.B."),
                      family = "Palmer",
                      role = "aut"),
               person(given = "Aitana",
                      family = "Oltra",
                      role = "aut"),
               person(given = "Frederic",
                      family = "Bartumeus",
                      role = "aut"))
as necessary.
Packages required but not available: 'recipes', 'rsample'

Package suggested but not available for checking: ‘rstanarm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘embryogrowth-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
No examples, no tests, no vignettes
Package required but not available: ‘logistf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘HLMdiag’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "urbanek@research.att.com"),
               person(given = "Yossi",
                      family = "Rubner",
                      role = "aut"))
as necessary.
License stub is invalid DCF.
Maintainer: ‘Donghoh Kim <donghoh.kim@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘clinDR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Packages suggested but not available for checking: 'bootnet', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shawn Garbett <Shawn@Garbett.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shawn",
                      family = "Garbett",
                      role = c("aut", "cre"),
                      email = "shawn@garbett.org"),
               person(given = "Mark",
                      family = "Kozdoba",
                      role = "aut"))
as necessary.
Running examples in ‘emln-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_monolayer_network
> ### Title: Creates a monolayer network object.
> ### Aliases: create_monolayer_network
> 
> ### ** Examples
> 
> library(igraph)

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

> 
> # A bipartite network from package bipartte
> x <- create_monolayer_network(bipartite::memmott1999, bipartite = TRUE,
+ directed = FALSE, group_names = c('Animals','Plants'))
Error in loadNamespace(x) : there is no package called ‘bipartite’
Calls: create_monolayer_network ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Suren Rathnayake <surenr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suren",
                      family = "Rathnayake",
                      role = c("aut", "cre"),
                      email = "surenr@gmail.com"),
               person(given = "Geoff",
                      family = "McLachlan",
                      role = "aut"),
               person(given = "David",
                      family = "Peel",
                      role = "aut"),
               person(given = "Jangsun",
                      family = "Baek",
                      role = "aut"))
as necessary.
Maintainer: ‘Ziyang Lyu <ziyang.lyu@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziyang",
                      family = "Lyu",
                      role = c("aut", "cre"),
                      email = "ziyang.lyu@unsw.edu.au"),
               person(given = "Daniel",
                      family = "Ahfock",
                      role = "aut"),
               person(given = c("Geoffrey", "J."),
                      family = "McLachlan",
                      role = "aut"))
as necessary.
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anjali",
                      family = "Goswami",
                      role = "aut"),
               person(given = "Tim",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "timcdlucas@gmail.com"),
               person(given = "Prabu",
                      family = "Sivasubramaniam",
                      role = "aut"),
               person(given = "John",
                      family = "Finarelli",
                      role = "aut"))
as necessary.
checkRd: (-1) macacaModels.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) macacaModels.Rd:10-11: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Deniz Akdemir <deniz.akdemir.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Deniz",
                      family = "Akdemir",
                      role = c("aut", "cre"),
                      email = "deniz.akdemir.work@gmail.com"),
               person(given = c("Okeke", "Uche"),
                      family = "Godfrey",
                      role = "aut"))
as necessary.
Package required but not available: ‘ows4R’

Package suggested but not available for checking: ‘mapview’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jon Barry <jon.barry@cefas.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jon",
                      family = "Barry",
                      role = c("aut", "cre"),
                      email = "jon.barry@cefas.co.uk"),
               person(given = "David",
                      family = "Maxwell",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘emon-package.Rd’:
    \keyword{power, ecological surveys, video surveys, [TRUNCATED]
Maintainer: ‘Simon Schwab <schw4b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Schwab",
                    role = c("aut", "cre"),
                    email = "schw4b@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.character.emphatic.Rd’ ‘as_emphatic.Rd’ ‘as_html.Rd’
    ‘as_latex.Rd’ ‘as_svg.Rd’ ‘as_svg_anim.Rd’ ‘as_svg_group.Rd’
    ‘as_typst.Rd’ ‘hl.Rd’ ‘hl_adjust.Rd’ ‘is_emphatic.Rd’
    ‘knit_print.emphatic.Rd’ ‘print.emphatic.Rd’ ‘show_html.Rd’
    ‘write_xlsx.Rd’
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eun-Kyung",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "lee.eunk@gmail.com"),
               person(given = "Hye-Min",
                      family = "Choe",
                      role = "aut"))
as necessary.
Maintainer: ‘Linsui Deng <denglinsui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Linsui",
                    family = "Deng",
                    role = c("aut", "cre"),
                    email = "denglinsui@gmail.com")
as necessary.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sang Kyu Lee <leesa111@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kexuan",
                      family = "Yang",
                      role = "aut",
                      email = "717260446@qq.com"),
               person(given = c("Sang", "Kyu"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "leesa111@msu.edu"),
               person(given = "Jun",
                      family = "Zhao",
                      role = "aut",
                      email = "zhaojun2021@hotmail.com"),
               person(given = "Hyoung-Moon",
                      family = "Kim",
                      role = "aut",
                      email = "hmk966a@gmail.com"))
as necessary.
Package required but not available: ‘sampleSelection’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘emuR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpYfV5x3/file6f8dd18b1d2ae/dct.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ACDm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
Maintainer: ‘Yafei Xu <yafei.xu@hotmail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yafei",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "yafei.xu@hotmail.de")
as necessary.
Maintainer: ‘Fatma Sevinc Kurnaz <fatmasevinckurnaz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fatma", "Sevinc"),
                      family = "Kurnaz",
                      role = c("aut", "cre"),
                      email = "fatmasevinckurnaz@gmail.com"),
               person(given = "Irene",
                      family = "Hoffmann",
                      role = "aut"),
               person(given = "Peter",
                      family = "Filzmoser",
                      role = "aut"))
as necessary.
checkRd: (-1) enetLTS-package.Rd:41: Lost braces; missing escapes or markup?
    41 |   \code{family="binomial"} should be a factor with two levels which is coded as \code{0} and {1}.
       |                                                                                              ^
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Fox",
                      role = "aut"),
               person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = "Anthony",
                      family = "Damico",
                      role = "aut"),
               person(given = c("Anne", "Pier"),
                      family = "Salverda",
                      role = "aut"))
as necessary.
Maintainer: ‘Douglas Bates <bates@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R", "port", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = c("Karen", "A.F."),
                      family = "Copeland",
                      role = "aut",
                      email = "karen@boulderstats.com"),
               person(given = "Douglas",
                      family = "Bates",
                      role = "cre",
                      email = "bates@stat.wisc.edu"))
as necessary.
Package required but not available: ‘rangeModelMetadata’

Packages suggested but not available for checking:
  'spocc', 'blockCV', 'ecospat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ENMeval', 'ggpubr'

Packages suggested but not available for checking:
  'hypervolume', 'ecospat', 'caret', 'fastshap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘enrichR.Rmd’ using rmarkdown

Quitting from enrichR.Rmd:139-144 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
no 'restart' 'muffleWarning' found
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from enrichR.Rmd:139-144 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
invokeRestart("muffleWarning")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'enrichR.Rmd' failed with diagnostics:
no 'restart' 'muffleWarning' found
--- failed re-building ‘enrichR.Rmd’

SUMMARY: processing the following file failed:
  ‘enrichR.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Saeid Amiri <saeid.amiri1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saeid",
                      family = "Amiri",
                      role = c("aut", "cre"),
                      email = "saeid.amiri1@gmail.com"),
               person(given = "Bertrand",
                      family = "Clarke",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Clarke.",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1506.07930>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) CTN.Rd:22: Lost braces; missing escapes or markup?
    22 | less memory. Genetic data consists of nucleotide data {A,T,C,G} and are usually saved
       |                                                       ^
Maintainer: ‘Chris Fraley <fraley@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Fraley",
                      role = c("aut", "cre"),
                      email = "fraley@u.washington.edu"),
               person(given = c("Adrian", "E."),
                      family = "Raftery",
                      role = "aut"),
               person(given = c("J.", "McLean"),
                      family = "Sloughter",
                      role = "aut"),
               person(given = "Tilmann",
                      family = "Gneiting",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Washington.",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpciyOLk/file6fd466b7cfcfd': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpciyOLk/file6fd466b7cfcfd': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘adabag’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sandor Baran <baran.sandor@inf.unideb.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "RA",
                      family = "Yuen",
                      role = "aut"),
               person(given = "Sandor",
                      family = "Baran",
                      role = c("aut", "cre"),
                      email = "baran.sandor@inf.unideb.hu"),
               person(given = "Chris",
                      family = "Fraley",
                      role = "aut"),
               person(given = "Tilmann",
                      family = "Gneiting",
                      role = "aut"),
               person(given = "Sebastian",
                      family = "Lerch",
                      role = "aut"),
               person(given = "Michael",
                      family = "Scheuerer",
                      role = "aut"),
               person(given = "Thordis",
                      family = "Thorarinsdottir",
                      role = "aut"))
as necessary.
Maintainer: ‘Jakob Messner <jakob.messner@posteo.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dylan Catlett <dcat4444@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dylan",
                      family = "Catlett",
                      role = c("aut", "cre"),
                      email = "dcat4444@gmail.com"),
               person(given = "Kevin",
                      family = "Son",
                      role = "ctb"),
               person(given = "Connie",
                      family = "Liang",
                      role = "ctb"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ClassificationEg.Rmd’ using rmarkdown

Quitting from ClassificationEg.Rmd:99-197 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `set_engine()`:
! could not find function "set_engine"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ClassificationEg.Rmd' failed with diagnostics:
could not find function "set_engine"
--- failed re-building ‘ClassificationEg.Rmd’

--- re-building ‘RegressionEg.Rmd’ using rmarkdown
--- finished re-building ‘RegressionEg.Rmd’

SUMMARY: processing the following file failed:
  ‘ClassificationEg.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘drc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixtools’

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparr’

Package suggested but not available for checking: ‘RStoolbox’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpO1ZHnz/file8243f3c8e330a': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpO1ZHnz/file8243f3c8e330a': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Daniel Mastropietro <mastropi@uwalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Mastropietro",
                    role = c("aut", "cre"),
                    email = "mastropi@uwalumni.com")
as necessary.
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Castor", "Guisande"),
                    family = "Gonzalez",
                    role = c("aut", "cre"),
                    email = "castor@uvigo.es")
as necessary.
checkRd: (-1) metrics.Rd:124: Lost braces
   124 | Avg = 0.5 (sum | P_i - Q_i| + max{ | P_i - Q_i |})
       |                                  ^
Maintainer: ‘Martina Campulova <martina.campulova@mendelu.cz>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘network.Rd’ ‘types.Rd’
Packages required but not available:
  'officer', 'rvg', 'flextable', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpEevkYW/Rf687ac375ac22b': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                           ^
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                                        ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘epca.Rmd’ using knitr

Quitting from epca.Rmd:12-19 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'epca.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘epca.Rmd’

SUMMARY: processing the following file failed:
  ‘epca.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Teemu Daniel Laajala <teelaa@utu.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Teemu", "Daniel"),
                      family = "Laajala",
                      role = c("aut", "cre"),
                      email = "teelaa@utu.fi"),
               person(given = "Mika",
                      family = "Murtojarvi",
                      role = "ctb",
                      email = "mianmu2@hotmail.com"))
as necessary.
Package required but not available: ‘timeROC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael A Rotondi <mrotondi@yorku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "A"),
                    family = "Rotondi",
                    role = c("aut", "cre"),
                    email = "mrotondi@yorku.ca")
as necessary.
Maintainer: ‘Tanujit Chakraborty <tanujitisi@gmail.com>’

The Description field contains
  et al. (2023) <arXiv:2206.10696> <doi:10.1016/j.chaos.2023.113124>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘branching_process_literature.Rmd’ using rmarkdown
--- finished re-building ‘branching_process_literature.Rmd’

--- re-building ‘design-principles.Rmd’ using rmarkdown
--- finished re-building ‘design-principles.Rmd’

--- re-building ‘epichains.Rmd’ using rmarkdown

Quitting from epichains.Rmd:64-67 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'epicontacts'
---
Backtrace:
    ▆
 1. └─base::library("epicontacts")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'epichains.Rmd' failed with diagnostics:
there is no package called 'epicontacts'
--- failed re-building ‘epichains.Rmd’

--- re-building ‘interventions.Rmd’ using rmarkdown
--- finished re-building ‘interventions.Rmd’

--- re-building ‘projecting_incidence.Rmd’ using rmarkdown
--- finished re-building ‘projecting_incidence.Rmd’

--- re-building ‘theoretical_background.Rmd’ using rmarkdown
--- finished re-building ‘theoretical_background.Rmd’

SUMMARY: processing the following file failed:
  ‘epichains.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'ggdag', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘threejs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(con, "w") :
  cannot open file '/tmp/Rtmpl5SWPS/file88ddd5145cb69': No space left on device
Error in file(con, "w") : cannot open the connection
Execution halted
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘epiDisplay-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp47rC6y/file77be610d02ea5/power.for.2means.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Packages required but not available: 'epicontacts', 'ggmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘EpiInvert-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EpiIndicators
> ### Title: 'EpiIndicators'
> ### Aliases: EpiIndicators
> 
> ### ** Examples
> 
> ## load data of epidemiological indicators obtained from the World in data
> ## organization
> data("owid")
> 
> ## Filter the data to get France epidemiological indicators
> library(dplyr)

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> sel <- filter(owid,iso_code=="FRA")
> 
> ## Generate a dataframe with the dates and the cases and deaths restored 
> ## using EpiInvert()
> df<-data.frame(sel$date,sel$new_cases_restored_EpiInvert,sel$new_deaths_restored_EpiInvert)
> 
> ## Run EpiIndicators
> res <- EpiIndicators(df)
> 
> ## Plot the results 
> EpiIndicators_plot(res)
Error in loadNamespace(x) : there is no package called ‘ggpubr’
Calls: EpiIndicators_plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'imputeTS', 'statnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpj9veSr/file7441e4e4f8919': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpj9veSr/file7441e4e4f8919': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'tergm', 'ergm'

Packages suggested but not available for checking:
  'ergm.ego', 'egor', 'ndtv', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) runSim.Rd:111: Lost braces
   111 | \ifelse{html}{\out{<i>r</i><sub>1</sub> = 1}}{{\eqn{r_1 = 1}}{r_1 = 1}} while the individual with the lowest phenotypic value
       |                                                              ^
checkRd: (-1) runSim.Rd:112: Lost braces
   112 | is given the rank \ifelse{html}{\out{<i>r<sub>n</sub></i> = <i>n</i>}}{{\eqn{r_n = n}}{r_n = n}}), the probability of an individual
       |                                                                                       ^
checkRd: (-1) runSim.Rd:120-122: Lost braces
   120 | }{
       |  ^
Package required but not available: ‘qgcomp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error: package or namespace load failed for ‘epiparameter’:
 .onLoad failed in loadNamespace() for 'epiparameter', details:
  call: file()
  error: cannot open the connection
Execution halted

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Error: .onLoad failed in loadNamespace() for 'epiparameter', details:
  call: file()
  error: cannot open the connection
Call sequence:
3: stop(gettextf("%s failed in %s() for '%s', details:\n  call: %s\n  error: %s", 
       hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L], 
       conditionMessage(res)), call. = FALSE, domain = NA)
2: runHook(".onLoad", env, package.lib, package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Error in file(open = "w+", encoding = "UTF-8") : 
  cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘epiparameter-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: c.epiparameter
> ### Title: 'c()' method for <epiparameter> class
> ### Aliases: c.epiparameter c.multi_epiparameter
> 
> ### ** Examples
> 
> db <- epiparameter_db()
Returning 125 results that match the criteria (100 are parameterised). 
Use subset to filter by entry variables or single_epiparameter to return a single entry. 
To retrieve the citation for each use the 'get_citation' function
> 
> # combine two <epiparameter> objects into a list
> c(db[[1]], db[[2]])
# List of 2 <epiparameter> objects
Number of diseases: 2
❯ Adenovirus ❯ Human Coronavirus
Number of epi parameters: 1
❯ incubation period
[[1]]
Disease: Adenovirus
Pathogen: Adenovirus
Epi Parameter: incubation period
Study: Lessler J, Reich N, Brookmeyer R, Perl T, Nelson K, Cummings D (2009).
“Incubation periods of acute respiratory viral infections: a systematic
review.” _The Lancet Infectious Diseases_.
doi:10.1016/S1473-3099(09)70069-6
<https://doi.org/10.1016/S1473-3099%2809%2970069-6>.
Distribution: lnorm (days)
Parameters:
  meanlog: 1.723
  sdlog: 0.231

[[2]]
Warning in file() :
  cannot open file '/tmp/Rtmpvzl4Sm/Rf8301eb4f7e86': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... getDynamicFlags -> recurse -> recurse -> processRdChunk -> file
Execution halted
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > # nolint start
  > library(testthat)
  > library(epiparameter)
  Error: package or namespace load failed for 'epiparameter':
   .onLoad failed in loadNamespace() for 'epiparameter', details:
    call: file()
    error: cannot open the connection
  In addition: Warning message:
  In file() :
    cannot open file '/tmp/RtmpW3EjXZ/Rf86901593b877a': No space left on device
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘defs-and-eqns.Rmd’ using rmarkdown
--- finished re-building ‘defs-and-eqns.Rmd’

--- re-building ‘epiphy.Rmd’ using rmarkdown

Quitting from epiphy.Rmd:216-221 [mapcomp]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/Rtmp1PUFZW/file7bd4b17e06a3'
---
Backtrace:
    ▆
 1. ├─base::plot(res)
 2. └─epiphy:::plot.mapcomp(res)
 3.   ├─base::print(gg)
 4.   └─ggplot2 (local) `print.ggplot2::ggplot`(gg)
 5.     └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'epiphy.Rmd' failed with diagnostics:
could not open file '/tmp/Rtmp1PUFZW/file7bd4b17e06a3'
--- failed re-building ‘epiphy.Rmd’

SUMMARY: processing the following file failed:
  ‘epiphy.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'officer'

Package suggested but not available for checking: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggdag’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Nassim AYAD [aut, cre] (<https://orcid.org/0000-0002-1809-0935>, Laboratory of Modeling and Biostatistics, Pasteur Institute of Algeria)’
  Authors@R: ‘Nassim AYAD [aut, cre] (ORCID: <https://orcid.org/0000-0002-1809-0935>, affiliation: Laboratory of Modeling and Biostatistics, Pasteur Institute of Algeria)’
Packages required but not available: 'janitor', 'plotly'

Package suggested but not available for checking: ‘taskscheduleR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘dsr.Rmd’ using rmarkdown
--- finished re-building ‘dsr.Rmd’

--- re-building ‘missingAgeGroups.Rmd’ using rmarkdown
--- finished re-building ‘missingAgeGroups.Rmd’

--- re-building ‘omop.Rmd’ using rmarkdown

Quitting from omop.Rmd:28-38 [cdm]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'IncidencePrevalence'
---
Backtrace:
    ▆
 1. └─base::library(IncidencePrevalence)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'omop.Rmd' failed with diagnostics:
there is no package called 'IncidencePrevalence'
--- failed re-building ‘omop.Rmd’

--- re-building ‘standardPopulation.Rmd’ using rmarkdown
--- finished re-building ‘standardPopulation.Rmd’

SUMMARY: processing the following file failed:
  ‘omop.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘epiR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bilge Baser <bilge.baser@msgsu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bilge",
                    family = "Baser",
                    role = c("aut", "cre"),
                    email = "bilge.baser@msgsu.edu.tr")
as necessary.
Maintainer: ‘Stuart Lacy <stuart.lacy@york.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stuart",
                    family = "Lacy",
                    role = c("aut", "cre"),
                    email = "stuart.lacy@york.ac.uk")
as necessary.
Package required but not available: ‘gtsummary’

Package suggested but not available for checking: ‘broom.helpers’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Adam Omidpanah <adam.omidpanah@wsu.edu>’

Found the following (possibly) invalid file URI:
  URI: www.colorbrewer.org
    From: man/colorbrewer.Rd
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5n8cQK/ltx824bf793c984c/agents_smallworld.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘PerFit’

Packages suggested but not available for checking: 'plotly', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYhTJPA/file7447b36e4ffbd/coordsFromEpmGrid.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘TopKLists’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emmanuel",
                    family = "Arnhold",
                    role = c("aut", "cre"),
                    email = "emmanuelarnhold@yahoo.com.br")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpT8D22c/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Jabed Tomal <jtomal@tru.ca>’

The Description field contains
  <arXiv:1706.06971> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thorn Thaler <thorn.thaler@thothal.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorn",
                    family = "Thaler",
                    role = c("aut", "cre"),
                    email = "thorn.thaler@thothal.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jun Li <jli49@kent.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "jli49@kent.edu"),
               person(given = c("Song", "Xi"),
                      family = "Chen",
                      role = "aut"),
               person(given = "Lingjun",
                      family = "Li",
                      role = "ctb"),
               person(given = "Clay",
                      family = "James",
                      role = "ctb"))
as necessary.

The Description field contains
  (2012) <arXiv:1206.0917>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘CalibrationCurves’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘equateIRT_tutorial.Rmd’ using rmarkdown

Quitting from equateIRT_tutorial.Rmd:65-70 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'sna'
---
Backtrace:
    ▆
 1. └─base::library(sna)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'equateIRT_tutorial.Rmd' failed with diagnostics:
there is no package called 'sna'
--- failed re-building ‘equateIRT_tutorial.Rmd’

--- re-building ‘equateIRT_paper.Rnw’ using Sweave
Warning: Argument mod1 is deprecated; please use mods and which instead.
Warning: Argument mod2 is deprecated; please use mods and which instead.
Loading required package: MASS
Loading required package: msm
Loading required package: polycor
--- finished re-building 'equateIRT_paper.Rnw'

SUMMARY: processing the following file failed:
  ‘equateIRT_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘broom.mixed’

Packages suggested but not available for checking:
  'parsnip', 'recipes', 'workflows', 'gtsummary'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bill Denney <wdenney@humanpredictions.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.

The Description field contains
  equivalence in time-to-event data <arXiv:2009.06699>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp4PN86a/file78daf450366b7': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp4PN86a/file78daf450366b7': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Stefan Wellek <stefan.wellek@zi-mannheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Wellek",
                      role = c("aut", "cre"),
                      email = "stefan.wellek@zi-mannheim.de"),
               person(given = "Peter",
                      family = "Ziegler",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘erah-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpeOo3Vd/file825a572c17f09/computeRIerror.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Isabel Serra <iserra@crm.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joan", "del"),
                      family = "Castillo",
                      role = "aut"),
               person(given = c("David", "Moriña"),
                      family = "Soler",
                      role = "aut"),
               person(given = "Isabel",
                      family = "Serra",
                      role = c("aut", "cre"),
                      email = "iserra@crm.cat"))
as necessary.
checkRd: (-1) Tm.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:55-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:58-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:36-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:40-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:43-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:47-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:60-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:69-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:75-77: Lost braces in \itemize; \value handles \item{}{} directly
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'btergm', 'sna'

Package suggested but not available for checking: ‘ergm.count’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ergm', 'egor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jenine K. Harris <harrisj@wustl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jenine", "K."),
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "harrisj@wustl.edu")
as necessary.
Package required but not available: ‘ergm’

Package suggested but not available for checking: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Packages required but not available: 'ergm', 'ergm.multi', 'tergm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘erlang_c_app.R’
Maintainer: ‘David Causeur <david.causeur@agrocampus-ouest.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Causeur",
                      role = c("aut", "cre"),
                      email = "david.causeur@agrocampus-ouest.fr"),
               person(given = "Ching-Fan",
                      family = "Sheu",
                      role = "aut"),
               person(given = "Mei-Chen",
                      family = "Chu",
                      role = "aut"),
               person(given = "Flavia",
                      family = "Rufini",
                      role = "aut"))
as necessary.
checkRd: (-1) ifa.Rd:16: Lost braces; missing escapes or markup?
    16 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then Sigma^{-1} 
       |                                                                         ^
checkRd: (-1) ifa.Rd:17: Lost braces; missing escapes or markup?
    17 | has the corresponding q-factor decomposition Sigma^{-1}=diag(phi)(I-theta theta')diag(phi), where theta is a mxq matrix and phi the vector of 
       |                                                    ^
checkRd: (-1) ifa.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{iSB}{m x q matrix (diag(Psi)+BB')^{-1}B.}
       |                                         ^
checkRd: (-1) isqrtfa.Rd:15: Lost braces; missing escapes or markup?
    15 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then the function returns a matrix Omega such that Sigma^{-1} = Omega Omega'. Equivalently,
       |                                                                                                                       ^
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Catherine B. Hurley <catherine.hurley@mu.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Catherine", "B."),
                    family = "Hurley",
                    role = c("aut", "cre"),
                    email = "catherine.hurley@mu.ie")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Merlin Unterfinger <info@munterfinger.ch>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmps70A1v/file78e3e1768261/get_erviss_variants_url.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Matteo Fasiolo <matteo.fasiolo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matteo",
                      family = "Fasiolo",
                      role = c("aut", "cre"),
                      email = "matteo.fasiolo@gmail.com"),
               person(given = c("Simon", "N."),
                      family = "Wood",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) enp.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enp.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kristian Brock <kristian.brock@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'trialr', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpEuFr9h/file75ccd2d657f9a/esc_rpb.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Zhao Yang <yangz98@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhao",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yangz98@connect.hku.hk"),
               person(given = "Ruitao",
                      family = "Lin",
                      role = "aut"),
               person(given = "Guosheng",
                      family = "Yin",
                      role = "aut"),
               person(given = "Ying",
                      family = "Yuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Satoshi Aoki <aokis1ll1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Satoshi",
                    family = "Aoki",
                    role = c("aut", "cre"),
                    email = "aokis1ll1@gmail.com")
as necessary.
Package required but not available: ‘CompAREdesign’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘esem_cfa_syntax.R’
Maintainer: ‘Wassim Youssef <Wassim.G.Youssef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Charles",
                      family = "Croix",
                      role = "aut"),
               person(given = "Thierry",
                      family = "Moudiki",
                      role = "aut"),
               person(given = "Frédéric",
                      family = "Planchet",
                      role = "aut"),
               person(given = "Wassim",
                      family = "Youssef",
                      role = c("aut", "cre"),
                      email = "wassim.g.youssef@gmail.com"))
as necessary.
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Marcel Miché <esmprep@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcel",
                    family = "Miché",
                    role = c("aut", "cre"),
                    email = "esmprep@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpO66dfh/Rf7834e2e800d87': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘datamods’

Packages suggested but not available for checking:
  'officer', 'rvg', 'rio', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiTxH0c/file78d2420cee400': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpiTxH0c/file78d2420cee400': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘ez’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Housen Li <housen.li@outlook.com>’

The Description field contains
  <arXiv:1612.07216>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘essHistogram.Rd’, ‘genIntv.Rd’, ‘mixnorm.Rd’, ‘msQuantile.Rd’
Maintainer: ‘Jorge Cimentada <cimentadaj@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘functional_stability_properties.Rmd’ using rmarkdown
--- finished re-building ‘functional_stability_properties.Rmd’

--- re-building ‘jacobian_stability_properties.Rmd’ using rmarkdown

Quitting from jacobian_stability_properties.Rmd:27-43 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'hesim'
---
Backtrace:
    ▆
 1. └─base::library(hesim)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'jacobian_stability_properties.Rmd' failed with diagnostics:
there is no package called 'hesim'
--- failed re-building ‘jacobian_stability_properties.Rmd’

SUMMARY: processing the following file failed:
  ‘jacobian_stability_properties.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Cengiz Zopluoglu <cen.zop@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cengiz",
                    family = "Zopluoglu",
                    role = c("aut", "cre"),
                    email = "cen.zop@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Giulio Costantini <giulio.costantini@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giulio",
                      family = "Costantini",
                      role = c("aut", "cre"),
                      email = "giulio.costantini@unimib.it"),
               person(given = "Nils",
                      family = "Kappelmann",
                      role = "aut"),
               person(given = "Sacha",
                      family = "Epskamp",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘qgraph’

Package suggested but not available for checking: ‘JGL’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rodrigo R Remédio <rremedio@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘wooldridge.Rd’:
    https://doi.org/10.1016/j.econlet.2009.04.026
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmph1oyFs/ltx9ee471884cb03/VizPDFsOLE.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Mario Hasler <hasler@email.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mario",
                    family = "Hasler",
                    role = c("aut", "cre"),
                    email = "hasler@email.uni-kiel.de")
as necessary.
checkRd: (-1) ETC-package.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:32: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘ggalluvial’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dbplyr', 'janitor'

VignetteBuilder package required for checking but not installed: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpkbbMGQ/Rf78eb3872abd2': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpujnEqC/file78e0578862b4/etrd_option_expiration.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Riccardo Giubilei <riccardogbl@gmail.com>’

The Description field contains
  Giubilei et al. (2022) <arXiv:2207.04430>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Anders D. Sleire <sleire@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Anders", "D."),
                    family = "Sleire",
                    role = c("aut", "cre"),
                    email = "sleire@gmail.com")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpqtRrov/file80b187b1bec2a/slpi.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Matthew Stephens <mstephens@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Stephens",
                    role = c("aut", "cre"),
                    email = "mstephens@uchicago.edu")
as necessary.
Running ‘tinytest.R’ [7s/9s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   tinytest::test_package("etwfe")
  + }
  
  test_baker.R..................    0 tests    
  test_baker.R..................    0 tests    
  test_baker.R..................    0 tests    
  test_baker.R..................    0 tests    
  test_baker.R..................    0 tests    
  test_baker.R..................    5 tests OK 7.6s
  Error in find.package(package, lib.loc, verbose = verbose) : 
    there is no package called 'did'
  Calls: <Anonymous> ... lapply -> FUN -> eval -> eval -> data -> find.package
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘etwfe.Rmd’ using rmarkdown

Quitting from etwfe.Rmd:114-118 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'did'
---
Backtrace:
    ▆
 1. └─utils::data("mpdta", package = "did")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'etwfe.Rmd' failed with diagnostics:
there is no package called 'did'
--- failed re-building ‘etwfe.Rmd’

SUMMARY: processing the following file failed:
  ‘etwfe.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
cannot open the connection
problem found in ‘medianheuristic.Rd’
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(eummd)
  Loading required package: Rcpp
  > 
  > test_check("eummd")
  Saving _problems/test6_meammd-71.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 30 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test6_meammd.R:71:5'): MEAMMD proj test ───────────────────────────
  Expected `type1_res` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 30 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘CommonDataModel’

Package suggested but not available for checking: ‘DatabaseConnector’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Leo Lahti <leo.lahti@iki.fi>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#rOpenGov_eurostat:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
  URL: https://app.gitter.im/#/room/#rOpenGov_eurostat:gitter.im?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Fahimeh Nezhadmoghadam <f.nejad.moghadam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fahimeh", "Nezhadmoghadam,Jose", "Gerardo"),
                      family = "Tamez-Pena",
                      role = "aut"),
               person(given = "Fahimeh",
                      family = "Nezhadmoghadam",
                      role = "cre",
                      email = "f.nejad.moghadam@gmail.com"))
as necessary.
checkRd: (-1) FuzzyCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "fcm {ppclust}"
       |                                                       ^
checkRd: (-1) pamCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "pam {cluster}"
       |                                                       ^
Packages required but not available: 'evalITR', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Lingzhi Li <mili@hbs.edu>’

The Description field contains
  <arXiv:1905.05389>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'caret', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Trevor Olsen <trevor@numerious.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'missMDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Danlu Guo <danlu.guo@unimelb.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Danlu",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "danlu.guo@adelaide.edu.au"),
               person(given = "Seth",
                      family = "Westra",
                      role = "aut",
                      email = "swestra@civeng.adelaide.edu.au"),
               person(given = "Tim",
                      family = "Peterson",
                      role = "ctb",
                      email = "tim.peterson@monash.edu"))
as necessary.
Maintainer: ‘Brian Bader <bbader.stat@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Thierry Denoeux <tdenoeux@utc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thierry",
                    family = "Denoeux",
                    role = c("aut", "cre"),
                    email = "tdenoeux@utc.fr")
as necessary.
Maintainer: ‘Alexander Karlsson <alexander.karlsson@his.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Karlsson",
                    role = c("aut", "cre"),
                    email = "alexander.karlsson@his.se")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

Found the following (possibly) invalid file URIs:
  URI: alec_stephenson@hotmail.com
    From: inst/doc/guide.pdf
  URI: ribatet@hotmail.com
    From: inst/doc/guide.pdf
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alec", "Stephenson.", "Function", "fbvpot", "by", "Chris"),
                      family = "Ferro.",
                      role = "aut"),
               person(given = "Alec",
                      family = "Stephenson",
                      role = "cre",
                      email = "alec_stephenson@hotmail.com"))
as necessary.
Maintainer: ‘Gert Janssenswillen <gert.janssenswillen@uhasselt.be>’

The BugReports field in DESCRIPTION has
  https://github.com/bupaverse/eventdataR/
which should likely be
  https://github.com/bupaverse/eventdataR/issues
instead.
Maintainer: ‘Michael C Sachs <sachsmc@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpRI78rt/Rf7820e4ce7a445': No space left on device
Package required but not available: ‘geepack’

Package suggested but not available for checking: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon,",
                      role = "aut",
                      email = "drjimlemon@gmail.com"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "cre",
                      email = "drjimlemon@gmail.com"))
as necessary.
Running massageExamples to create ‘eventInterval-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
No examples, no tests, no vignettes
Packages required but not available: 'plotly', 'flexsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'flexsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYtEjiX/file818388de9ad7/fitted.evgam.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Bikram Karmakar <bkarmakar@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bikram",
                    family = "Karmakar",
                    role = c("aut", "cre"),
                    email = "bkarmakar@ufl.edu")
as necessary.
Packages required but not available: 'meta', 'Cyclops'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/evinf.Rcheck/00install.out’ for details.
Maintainer: ‘Carl Scarrott <carl.scarrott@canterbury.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carl",
                      family = "Scarrott",
                      role = c("aut", "cre"),
                      email = "carl.scarrott@canterbury.ac.nz"),
               person(given = "Yang",
                      family = "Hu",
                      role = "aut"),
               person(given = "Alfadino",
                      family = "Akbar",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Canterbury",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘evola_intro.Rmd’ using rmarkdown

Quitting from evola_intro.Rmd:56-76 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/RtmpO3hKEp/file8d6b847cd2b88'
---
Backtrace:
    ▆
 1. └─evola::evolmonitor(res0)
 2.   ├─base::plot(...)
 3.   └─graphics::plot.default(...)
 4.     └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'evola_intro.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpO3hKEp/file8d6b847cd2b88'
--- failed re-building ‘evola_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘evola_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp265UNY/Rf8736f2a8abb62': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpbMV8KS/file932e0539264a0/Normalize.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Analyzing_rates_of_evolution.Rmd’ using rmarkdown
--- finished re-building ‘Analyzing_rates_of_evolution.Rmd’

--- re-building ‘Phylogenetic_mixed_model.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpRl7j2L/Rf8ecc2700816db': No space left on device

Quitting from Phylogenetic_mixed_model.Rmd:52-54 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Phylogenetic_mixed_model.Rmd:52-54 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Phylogenetic_mixed_model.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Phylogenetic_mixed_model.Rmd’

SUMMARY: processing the following file failed:
  ‘Phylogenetic_mixed_model.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
sh: 1: cannot create /tmp/RtmpMoHsWJ/xshell87c312b678521: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpMoHsWJ/xshell87c312b678521': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Juan Manuel Cabrera <juanmanuelcabrera1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Manuel"),
                      family = "Cabrera",
                      role = c("aut", "cre"),
                      email = "juanmanuelcabrera1@gmail.com"),
               person(given = "Federico",
                      family = "Giri",
                      role = "aut"))
as necessary.
Package required but not available: ‘geomorph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Grubinger <ThomasGrubinger@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
‘evtree.Rnw’... [20s/25s] NOTE
differences from ‘evtree.Rout.save’
425,426d424
< Warning in grid.newpage() :
<   Cannot open temporary file '/tmp/RtmpRZWaNH/pdf8da041c361634' for compression (reason: No space left on device); compression has been turned off for this device
Error(s) in re-building vignettes:
  ...
--- re-building ‘ewens-sampling-distribution.qmd’ using html
Warning in file(open = "w+b") :
  cannot open file '/tmp/RtmpZeyEVv/Rf84d324c0b6069': No space left on device
Error: processing vignette 'ewens-sampling-distribution.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `file()`:
! cannot open the connection
--- failed re-building ‘ewens-sampling-distribution.qmd’

SUMMARY: processing the following file failed:
  ‘ewens-sampling-distribution.qmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Meryam Krit <meryam.krit@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Meryam",
                    family = "Krit",
                    role = c("aut", "cre"),
                    email = "meryam.krit@gmail.com")
as necessary.
Maintainer: ‘Marcio A. Diniz <marcio.diniz@cshs.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcio", "A."),
                    family = "Diniz",
                    role = c("aut", "cre"),
                    email = "marcio.diniz@cshs.org")
as necessary.
Maintainer: ‘Quentin Lajaunie <quentin_lajaunie@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Baptiste",
                      family = "Hasse",
                      role = "aut"),
               person(given = "Quentin",
                      family = "Lajaunie",
                      role = c("aut", "cre"),
                      email = "quentin_lajaunie@hotmail.fr"))
as necessary.
install log ‘’ does not exist
Maintainer: ‘Guogen Shan <gshan@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guogen",
                      family = "Shan",
                      role = c("aut", "cre"),
                      email = "gshan@ufl.edu"),
               person(given = "Weizhen",
                      family = "Wang",
                      role = "aut",
                      email = "weizhen.wang@wright.edu"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘make.Gmatrix.Rd’, ‘mean_matrix.Rd’, ‘r_nought.Rd’, ‘reMat.Rd’, ‘run_matrix_checks.Rd’, ‘variance_complete.Rd’
Maintainer: ‘Chris J. Lloyd <c.lloyd@mbs.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chris", "J."),
                    family = "Lloyd",
                    role = c("aut", "cre"),
                    email = "c.lloyd@mbs.edu")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpdSicey/file8f3fb77d7ee4b/BNM_PBIL.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘exams2forms-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmphRN0Pq/file8733269eacf72', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmphRN0Pq/file8733269eacf72/exams2forms.R': No such file or directory
Execution halted
 NONE
Running massageExamples to create ‘exams.forge.data-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpOsmMAt/file87b8d64d4b7d2', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpOsmMAt/file87b8d64d4b7d2/sos.R': No such file or directory
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpCjdwIW/file91b37733d77eb': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpCjdwIW/file91b37733d77eb': No such file or directory
Error in file(con, "r") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpavzVWI/Rf81a2163c0064c': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Running examples in ‘exams-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exams2moodle
> ### Title: Generation of Exams in Moodle XML Format
> ### Aliases: exams2moodle make_question_moodle make_question_moodle23
> ### Keywords: utilities
> 
> ### ** Examples
> 
> ## load package and enforce par(ask = FALSE)
> library("exams")
> options(device.ask.default = FALSE)
> 
> ## define an exams (= list of exercises)
> myexam <- list(
+   "boxplots.Rmd",
+   c("tstat.Rmd", "ttest.Rmd", "confint.Rmd"),
+   c("regression.Rmd", "anova.Rmd"),
+   c("scatterplot.Rmd", "boxhist.Rmd"),
+   "relfreq.Rmd"
+ )
> 
> ## output directory
> dir.create(mydir <- tempfile())
> 
> ## generate moodle quiz in temporary directory
> ## using a few customization options
> exams2moodle(myexam, n = 3, dir = mydir,
+   num = list(solution = FALSE),
+   mchoice = list(shuffle = TRUE)
+ )
pandoc: /tmp/RtmpOz4OOL/file900fb2ec2dd03: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception


Error: pandoc document conversion failed with error 1
Execution halted
Running ‘encodings.R’ [2s/2s]
  Running ‘exams2nops.R’ [5s/7s]
Running the tests in ‘tests/exams2nops.R’ failed.
Complete output:
  > library("exams")
  > oopt <- options(device.ask.default = FALSE, exams_tex = "tools")
  > 
  > ## define an exam (= list of exercises)
  > myexam <- list(
  +   "tstat2.Rmd",
  +   "ttest.Rmd",
  +   "relfreq.Rmd",
  +   "anova.Rmd",
  +   c("boxplots.Rmd", "scatterplot.Rmd"),
  +   "cholesky.Rmd"
  + )
  > 
  > ## create multiple exams on the disk (in a temporary directory)
  > dir.create(mydir <- tempfile())
  > 
  > ## generate NOPS exam in temporary directory
  > set.seed(403)
  > ex1 <- exams2nops(myexam, n = 2, dir = mydir)
  > dir(mydir)
  [1] "metainfo.rds" "nops1.pdf"    "nops2.pdf"   
  > 
  > ## use a few customization options: different
  > ## university/logo and language/title
  > ## with a replacement sheet but for non-duplex printing
  > set.seed(403)
  > ex2 <- exams2nops(myexam, n = 2, dir = mydir,
  +   institution = "Universit\\\\\"at Innsbruck",
  +   name = "uibk", logo = "uibk-logo-bw.png",
  +   title = "Klausur", language = "de",
  +   replacement = TRUE, duplex = FALSE)
  Error in file("", "w+b") : cannot open the connection
  Calls: exams2nops ... watchout -> local_persistent_sink_connection -> file
  In addition: Warning message:
  In file("", "w+b") :
    cannot open file '/tmp/RtmpVeE905/Rf920f718003655': No space left on device
  Error in file(con, "w") : cannot open the connection
  Calls: exams2nops ... <Anonymous> -> handler -> write_utf8 -> writeLines -> file
  In addition: Warning message:
  In file(con, "w") : cannot open file 'relfreq.md': No space left on device
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘exams.Rnw’ using Sweave
--- finished re-building ‘exams.Rnw’

--- re-building ‘exams2.Rnw’ using Sweave
Warning in exams(myexam, n = 3, dir = odir, template = c("exam", "solution")) :
  The template exam.tex has been adapted to exams2pdf() and is not
  fully compatible with exams() anymore. Template oexam.tex used
  instead.
Warning in exams(myexam, n = 3, dir = odir, template = c("exam", "solution")) :
  The template solution.tex has been adapted to exams2pdf() and is
  not fully compatible with exams() anymore. Template osolution.tex
  used instead.
Warning in file() :
  cannot open file '/tmp/RtmplWqyxL/Rf9a0b264dfd16b': No space left on device

Error: processing vignette 'exams2.Rnw' failed with diagnostics:
 chunk 7 (label = myexam1) 
Error in file() : cannot open the connection

--- failed re-building ‘exams2.Rnw’

SUMMARY: processing the following file failed:
  ‘exams2.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Maintainer: ‘Jack Will <wujackwill@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jack",
                    family = "Will",
                    role = c("aut", "cre"),
                    email = "wujackwill@outlook.com")
as necessary.
Maintainer: ‘Nika Salia <2001salia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Irakli",
                      family = "Salia",
                      role = "aut",
                      email = "irakli.salia854@gmail.com"),
               person(given = "Nika",
                      family = "Salia",
                      role = "cre",
                      email = "2001salia@gmail.com"))
as necessary.
Maintainer: ‘Marc-Daniel Mildenberger <mildenberger.stat@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marc-Daniel",
                    family = "Mildenberger",
                    role = c("aut", "cre"),
                    email = "mildenberger.stat@web.de")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘exCon-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
No examples, no tests, no vignettes
Maintainer: ‘David Bolin <davidbolin@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘fmesher’

Packages suggested but not available for checking:
  'INLA', 'inlabru', 'rSPDE'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘automagic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpzBENfg/ltx88638230c5b68', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpzBENfg/ltx88638230c5b68/configure_exiftoolr.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric Batista Ferreira <eric.ferreira@unifal-mg.edu.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eric", "Batista"),
                      family = "Ferreira",
                      role = c("aut", "cre"),
                      email = "eric.ferreira@unifal-mg.edu.br"),
               person(given = c("Portya", "Piscitelli"),
                      family = "Cavalcanti",
                      role = "aut"),
               person(given = c("Denismar", "Alves"),
                      family = "Nogueira",
                      role = "aut"))
as necessary.
checkRd: (-1) ccF.Rd:41: Lost braces
    41 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
Packages required but not available: 'cvms', 'ggpubr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mediation', 'weights'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'officer', 'rvg', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘PupillometryR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ben Powell <ben.powell@york.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Powell",
                    role = c("aut", "cre"),
                    email = "ben.powell@york.ac.uk")
as necessary.
Maintainer: ‘Larisa Zamora-Matamoros <larisa@uo.edu.cu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Larisa",
                      family = "Zamora-Matamoros",
                      role = c("aut", "cre"),
                      email = "larisa@uo.edu.cu"),
               person(given = "Jorge",
                      family = "Diaz-Silvera",
                      role = "aut"))
as necessary.
Maintainer: ‘Rob J Hyndman <Rob.Hyndman@monash.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Rob", "J"),
                    family = "Hyndman",
                    role = c("aut", "cre"),
                    email = "Rob.Hyndman@monash.edu")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: www.exponentialsmoothing.net
    From: man/expsmooth-package.Rd
  URI: www.exponentialsmoothing.net
    From: man/freight.Rd
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_fct_adjs.R’ ‘compute_fct_adjs.Rd’ ‘guess_measure_sets.R’
    ‘mutate_expecvar.R’ ‘mutate_expecvar.Rd’ ‘mutate_metrics.R’
    ‘mutate_metrics.Rd’ ‘summarise_measures.R’ ‘summarise_measures.Rd’
    ‘validators.R’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpn9L1Vw/file91b983a6d90c5': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpn9L1Vw/file91b983a6d90c5': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Huixia Judy Wang <judywang@gwu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Huixia", "Judy"),
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "judywang@gwu.edu")
as necessary.
Maintainer: ‘Greg McMahan <gmcmacran@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "McMahan",
                    role = c("aut", "cre"),
                    email = "gmcmacran@gmail.com")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("B", "N"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘Han Li <hli@szu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "hli@szu.edu.cn"),
               person(given = "Minxuan",
                      family = "Xu",
                      role = "aut"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"),
               person(given = "Xiaodan",
                      family = "Fan",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suhadip",
                      family = "Datta",
                      role = "aut"),
               person(given = "Subhadip",
                      family = "Datta",
                      role = "cre",
                      email = "subhadipdatta007@gmail.com"))
as necessary.
Packages required but not available: 'afex', 'ARTool'

Package suggested but not available for checking: ‘Superpower’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chester C. Deocaris <ccdeocaris@pup.edu.ph>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chester", "C."),
                    family = "Deocaris",
                    role = c("aut", "cre"),
                    email = "ccdeocaris@pup.edu.ph")
as necessary.

The Description field contains
  paper of Molina (2019) <arXiv:1912.01783>, Seager (2013)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Francesco Bartolucci <francesco.bartolucci@unipg.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francesco",
                      family = "Bartolucci",
                      role = c("aut", "cre"),
                      email = "francesco.bartolucci@unipg.it"),
               person(given = "Antonio",
                      family = "Forcina",
                      role = "aut"))
as necessary.

The Description field contains
  association parameters; see Forcina (2019) <arXiv:1910.13848>. These
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Maxime Taillardat <maxime.taillardat@meteo.fr>’

Reading Rd files failed with message:
  cannot open the connection

The Description field contains
  index in Taillardat et al. (2019) <arXiv:1905.04022>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘extremeStat-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpGM1YHi/file9a08e554abd53/plotLexBoot.R': No space left on device
Execution halted
 NONE
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpZMI4Oo/Rf91c2752910c95': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Nadezda Frolova <nfrolova@ualberta.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nadezda",
                      family = "Frolova",
                      role = c("aut", "cre"),
                      email = "nfrolova@ualberta.ca"),
               person(given = "Ivor",
                      family = "Cribben",
                      role = "aut"))
as necessary.
cannot open the connection
problem found in ‘exuber.Rd’
Maintainer: ‘Tjebo Heeren <tjebo@gmx.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘amd.Rd’:
    https://doi.org/10.5061/dryad.nvx0k6dqg
    https://doi.org/10.1001/jamaophthalmol.2020.5044
  File ‘amd2.Rd’:
    https://doi.org/10.5061/dryad.97r9289
    https://doi.org/10.1136/bmjopen-2018-027441
  File ‘amd3.Rd’:
    https://doi.org/10.5061/dryad.9cnp5hqfm
    https://doi.org/10.1136/bjophthalmol-2020-317161
  File ‘amdoct.Rd’:
    https://doi.org/10.1038/s41591-018-0107-6
    https://doi.org/10.1038/s41591-020-0867-7
    https://doi.org/10.5061/dryad.2rbnzs7m4
    https://doi.org/10.1016/j.ophtha.2020.09.025
  File ‘dme.Rd’:
    https://doi.org/10.5061/dryad.pzgmsbcfw
    https://doi.org/10.1038/s41433-020-1048-0
Warning in file() :
  cannot open file '/tmp/RtmpoBf3iM/Rf91bec3077cc54': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/eyeris.Rcheck/00install.out’ for details.
Package required but not available: ‘broom.mixed’

Package suggested but not available for checking: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy Koscik <timothy-koscik@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "R."),
                      family = "Koscik",
                      role = c("aut", "cre", "cph")),
               person(given = "Timothy",
                      family = "Koscik",
                      role = "cre",
                      email = "timothy-koscik@uiowa.edu"))
as necessary.
Package required but not available: ‘klaR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘drc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) EEzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
Running massageExamples to create ‘ezplot-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpDYwCQZ/file979414511f64c/area_plot.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jin Kim <jin.m.kim@yale.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘weights’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jill Lundell <jflundell@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘my-vignette.Rmd’ using rmarkdown

Quitting from my-vignette.Rmd:245-254 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'rsample'
---
Backtrace:
    ▆
 1. └─base::library(rsample)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
there is no package called 'rsample'
--- failed re-building ‘my-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘my-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘f1dataR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘multifabCIhom.Rd’, ‘pppaccept.Rd’, ‘radon.Rd’, ‘sfabz.Rd’, ‘umauregCI.Rd’, ‘wfabt.Rd’
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Hoff",
                    role = c("aut", "cre"),
                    email = "peter.hoff@duke.edu")
as necessary.

The Description field contains
  construction. See Hoff (2019) <arXiv:1907.12589> "Smaller p-values via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Martin Ondrus <mondrus@ualberta.ca>’

The Description field contains
  (2021) <arXiv:2103.06347>. For a more detailed explanation and applied
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘ATAforecasting’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘GLARMA.R’ ‘GLARMA.Rd’ ‘INGARCH.R’ ‘INGARCH.Rd’ ‘fitted.GLARMA.Rd’
    ‘fitted.INGARCH.Rd’ ‘forecast.GLARMA.Rd’ ‘forecast.INGARCH.Rd’
    ‘glance.GLARMA.Rd’ ‘glance.INGARCH.Rd’ ‘residuals.GLARMA.Rd’
    ‘residuals.INGARCH.Rd’ ‘tidy.GLARMA.Rd’ ‘tidy.INGARCH.Rd’
Maintainer: ‘Elizabeth Bersson <elizabeth.bersson@duke.edu>’

The Description field contains
  <arXiv:2204.08122> "Optimal Conformal Prediction for Small Areas".
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'janitor', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Conversion of ‘NEWS.md’ failed:
pandoc: /tmp/RtmpXIzB8k/pandoc90c5564d0197d.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
checkRd: (-1) fmCov.Rd:37: Lost braces; missing escapes or markup?
    37 | where, \code{alpha(i)} is the intercept, \code{f(t)} is a {K x 1} vector of 
       |                                                           ^
checkRd: (-1) plot.ffm.Rd:82: Lost braces; missing escapes or markup?
    82 | \item{las}{one of {0, 1, 2, 3} to set the direction of axis labels, same as
       |                   ^
checkRd: (-1) summary.ffm.Rd:39: Lost braces; missing escapes or markup?
    39 | Returned object is of class {summary.ffm}.
       |                             ^
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpA3ALHx/Rf9801b2c22c268': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Koulik Khamaru <koulik123@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Koulik",
                      family = "Khamaru",
                      role = c("aut", "cre"),
                      email = "koulik123@gmail.com"),
               person(given = "Rahul",
                      family = "Mazumder",
                      role = "aut",
                      email = "rahul.mazumder@gmail.com"))
as necessary.
Maintainer: ‘Campo Elias Pardo <cepardot@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Campo", "Elias"),
                      family = "Pardo",
                      role = c("aut", "cre"),
                      email = "cepardot@unal.edu.co"),
               person(given = c("Pedro", "Cesar", "del"),
                      family = "Campo",
                      role = "aut",
                      email = "pcdelcampon@unal.edu.co"),
               person(given = c("Camilo", "Jose"),
                      family = "Torres",
                      role = "aut",
                      email = "cjtorresj@unal.edu.co"),
               person(given = c("with", "the", "contributions", "from.", "Ivan"),
                      family = "Diaz",
                      role = "aut",
                      email = "ildiazm@unal.edu.co"),
               person(given = "Mauricio",
                      family = "Sadinle",
                      role = "aut",
                      email = "msadinleg@unal.edu.co"),
               person(given = "Jhonathan",
                      family = "Medina.",
                      role = "aut",
                      email = "jmedinau@unal.edu.co"))
as necessary.
Packages required but not available: 'FactoMineR', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Packages suggested but not available for checking: 'missMDA', 'Factoshiny'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dibaba Bayisa Gemechu <diboobayu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dibaba", "Bayisa"),
                      family = "Gemechu",
                      role = c("aut", "cre"),
                      email = "diboobayu@gmail.com"),
               person(given = c("Legesse", "Kassa"),
                      family = "Debusho",
                      role = "aut"),
               person(given = "Linda",
                      family = "Haines",
                      role = "aut"))
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>’

The Description field contains
  (2022) <arXiv:2201.00339>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'rcompanion', 'FSA', 'car'

Packages suggested but not available for checking: 'ARTool', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yujung Hwang <yujungghwang@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Running massageExamples to create ‘factor.switching-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp9FEvzK/file9f008168a6fa4/rsp_exact.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Packages required but not available:
  'FactoMineR', 'FactoInvestigate', 'missMDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Causeur <david.causeur@agrocampus-ouest.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emeline",
                      family = "Perthame",
                      role = "aut",
                      comment = "Institut Pasteur, Paris, France"),
               person(given = "Chloe",
                      family = "Friguet",
                      role = "aut",
                      comment = "Universite de Bretagne Sud, Vannes, France"),
               person(given = "David",
                      family = "Causeur",
                      role = c("aut", "cre"),
                      email = "david.causeur@agrocampus-ouest.fr",
                      comment = "Agrocampus\n    Ouest, Rennes, France"))
as necessary.
Maintainer: ‘Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Aucoin",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Petzoldt",
                      role = "cre",
                      email = "thomas.petzoldt@tu-dresden.de"))
as necessary.
Packages required but not available: 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tableone’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'EGAnet', 'MBESS', 'haven', 'mice', 'semPlot', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kjetil B Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("compiled", "by", "Kjetil", "B"),
                      family = "Halvorsen",
                      role = "aut"),
               person(given = c("Kjetil", "B"),
                      family = "Halvorsen",
                      role = "cre",
                      email = "kjetil1001@gmail.com"))
as necessary.
checkRd: (-1) happy.Rd:14: Lost braces
    14 |                  code{Pretty happy} <  \code{Very happy}}
       |                      ^
Maintainer: ‘Michel Lang <michellang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michel",
                    family = "Lang",
                    role = c("aut", "cre"),
                    email = "michellang@gmail.com")
as necessary.
Package required but not available: ‘ggalluvial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggalluvial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rdflib', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joe Delaney <delaneyj@musc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joe",
                    family = "Delaney",
                    role = c("aut", "cre"),
                    email = "delaneyj@musc.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘An_Introduction_to_fakemake.Rasciidoc’ using rasciidoc
Warning in run_knit(file_name, knit = knit, envir = envir, write_to_disk = write_to_disk) :
  Setting option knit to TRUE based on the file contents!


processing file: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fakemake.Rcheck/vign_test/fakemake/vignettes/An_Introduction_to_fakemake.Rasciidoc
output file: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fakemake.Rcheck/vign_test/fakemake/vignettes/An_Introduction_to_fakemake.asciidoc

Can't find program `source-highlight`. Please install first (http://www.gnu.org/software/src-highlite/).
Can't find program `source-highlight`. Please install first (http://www.gnu.org/software/src-highlite/).
Can't find program `asciidoc`. Please install first (http://www.asciidoc.org).
Cloning into '/tmp/Rtmpvs8ilw/asciidoc'...
error: unable to create file asciidoc/resources/filters/code/code-filter.conf: No space left on device
error: unable to create file asciidoc/resources/filters/code/code-filter.py: No space left on device
fatal: cannot create directory at 'asciidoc/resources/filters/graphviz': No space left on device
warning: Clone succeeded, but checkout failed.
You can inspect what was checked out with 'git status'
and retry with 'git restore --source=HEAD :/'

Error: processing vignette 'An_Introduction_to_fakemake.Rasciidoc' failed with diagnostics:
could not open '/tmp/Rtmpvs8ilw/asciidoc/tests/data/lang-ru-book-test-html5.html' for writing: No space left on device
--- failed re-building ‘An_Introduction_to_fakemake.Rasciidoc’

SUMMARY: processing the following file failed:
  ‘An_Introduction_to_fakemake.Rasciidoc’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Alfi Nurrahmah <221810140@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alfi",
                    family = "Nurrahmah",
                    role = c("aut", "cre"),
                    email = "221810140@stis.ac.id")
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Package required but not available: ‘DepthProc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Aucoin",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Petzoldt",
                      role = "cre",
                      email = "thomas.petzoldt@tu-dresden.de"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ali Ahani <ali.ahani66@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ali",
                      family = "Ahani",
                      role = c("aut", "cre"),
                      email = "a_ahani@sbu.ac.ir",
                      comment = c(ORCID = "0000-0002-1441-0444")),
               person(given = c("S.", "Saeid", "Mousavi"),
                      family = "Nadoushani",
                      role = "aut",
                      email = "sa_mousavi@sbu.ac.ir",
                      comment = c(ORCID = "0000-0001-6679-5553")))
as necessary.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter W. MacDonald <pwmacdon@umich.edu>’

The Description field contains
  Zhu and Levina (2022+) <arXiv:2210.07491>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jonas Striaukas <jonas.striaukas@gmail.com>’

The Description field contains
  Striaukas (2023) <arXiv:2307.13364>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘tidyhydat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric C. Chi <ecchi1105@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Studer, and Baraniuk (2016) <arXiv:1411.3406>. Schemes such as Fast
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Aaron Molstad <molst029@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Molstad",
                    role = c("aut", "cre"),
                    email = "molst029@umn.edu")
as necessary.
Package required but not available: ‘BMisc’

Package suggested but not available for checking: ‘did’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘refund’

Package suggested but not available for checking: ‘irregulAR1’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'refund', 'lmeresampler'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander W Blocker <ablocker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alexander", "W"),
                    family = "Blocker",
                    role = c("aut", "cre"),
                    email = "ablocker@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘benchmarks-fastglm.Rmd’ using rmarkdown
--- finished re-building ‘benchmarks-fastglm.Rmd’

--- re-building ‘count-firth-fastglm.Rmd’ using rmarkdown

Quitting from count-firth-fastglm.Rmd:32-40 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'logistf'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(logistf)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'count-firth-fastglm.Rmd' failed with diagnostics:
there is no package called 'logistf'
--- failed re-building ‘count-firth-fastglm.Rmd’

--- re-building ‘fastglm-overview.Rmd’ using rmarkdown
--- finished re-building ‘fastglm-overview.Rmd’

--- re-building ‘fastglm.Rmd’ using rmarkdown
--- finished re-building ‘fastglm.Rmd’

--- re-building ‘large-data-fastglm.Rmd’ using rmarkdown
--- finished re-building ‘large-data-fastglm.Rmd’

SUMMARY: processing the following file failed:
  ‘count-firth-fastglm.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Steven T. Garren <garrenst@jmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "T."),
                    family = "Garren",
                    role = c("aut", "cre"),
                    email = "garrenst@jmu.edu")
as necessary.
Maintainer: ‘Stephen R. Haptonstahl <srh@haptonstahl.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stephen", "R."),
                    family = "Haptonstahl",
                    role = c("aut", "cre"),
                    email = "srh@haptonstahl.org")
as necessary.
Packages required but not available: 'caret', 'pec'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gaston Besanson <besanson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gaston",
                    family = "Besanson",
                    role = c("aut", "cre"),
                    email = "besanson@gmail.com")
as necessary.
Package required but not available: ‘parsnip’

Package suggested but not available for checking: ‘tidymodels’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                ^
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                     ^
Maintainer: ‘Mathieu Steijn <m.p.a.steijn@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mathieu",
                    family = "Steijn",
                    role = c("aut", "cre"),
                    email = "m.p.a.steijn@uu.nl")
as necessary.
Packages required but not available:
  'recipes', 'rsample', 'parsnip', 'tune', 'workflows', 'finetune',
  'janitor'

Packages suggested but not available for checking:
  'baguette', 'discrim', 'fairmodels', 'flexsurv', 'plsmod',
  'probably', 'censored', 'klaR', 'keras', 'rstanarm', 'GGally',
  'themis', 'VIM', 'plotly', 'skimr', 'pec'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Skogholt <m.skogholt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Skogholt",
                    role = c("aut", "cre"),
                    email = "m.skogholt@gmail.com")
as necessary.
Package required but not available: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Georg",
                    family = "Hahn",
                    role = c("aut", "cre"),
                    email = "ghahn@hsph.harvard.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘example.Rmd’ using rmarkdown

Quitting from example.Rmd:42-49 [load-libraries]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'sampleSelection'
---
Backtrace:
    ▆
 1. └─base::library("sampleSelection")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'example.Rmd' failed with diagnostics:
there is no package called 'sampleSelection'
--- failed re-building ‘example.Rmd’

SUMMARY: processing the following file failed:
  ‘example.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘mosaic’

Packages suggested but not available for checking:
  'ggformula', 'mosaicCalc', 'Hmisc', 'car', 'alr4'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'haven', 'osdc'

Package suggested but not available for checking: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘qs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "simon.urbanek@r-project.org")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dominic Grün <dominic.gruen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dominic",
                    family = "Grün",
                    role = c("aut", "cre"),
                    email = "dominic.gruen@gmail.com")
as necessary.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oliver",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Alex",
                      family = "Bellos",
                      role = "cph"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md

The Description field contains
  (http://pages.bloomsbury.com/favouritenumber).
Please enclose URLs in angle brackets (<...>).
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpxJ7Apz/fileca1ff50dd8434/fish4_parameters.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘tolerance’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luca Agnelli  <luca.agnelli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Andronache",
                      role = "aut",
                      email = "adi.andronache@gmail.com"),
               person(given = "Luca",
                      family = "Agnelli",
                      role = c("aut", "cre"),
                      email = "luca.agnelli@gmail.com"))
as necessary.
Maintainer: ‘Tobias Setz <tobias.setz@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diethelm",
                      family = "Wuertz",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Setz",
                      role = "cre",
                      email = "tobias.setz@live.com"))
as necessary.
checkRd: (-1) fbad_copy_ad.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_ad.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) fbad_copy_adset.Rd:34: Lost braces; missing escapes or markup?
    34 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_adset.Rd:36: Lost braces; missing escapes or markup?
    36 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) fbad_copy_campaign.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_campaign.Rd:33: Lost braces; missing escapes or markup?
    33 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) plot.fbroc.conf.Rd:5: Lost braces
     5 | \title{Plots function for object of class{fbroc.conf}}
       |                                          ^
Maintainer: ‘Riko Kelter <riko_k@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riko",
                    family = "Kelter",
                    role = c("aut", "cre"),
                    email = "riko_k@gmx.de")
as necessary.
Package required but not available: ‘rstanarm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'ftsa', 'ggpubr', 'plotly'

Package suggested but not available for checking: ‘fda.usc’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
File ‘fcl/libs/fcl.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Zoumpoulia Dikopoulou <dikopoulia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zoumpoulia", "Dikopoulou"),
                      family = "<zoumpolia.dikopoulou@uhasselt.be>",
                      role = "aut",
                      email = "zoumpolia.dikopoulou@uhasselt.be"),
               person(given = "Elpiniki",
                      family = "Papageorgiou",
                      role = "aut",
                      email = "epapageorgiou@teiste.gr"),
               person(role = "aut",
                      email = "e.i.papageorgiou75@gmail.com"),
               person(given = "Zoumpoulia",
                      family = "Dikopoulou",
                      role = "cre",
                      email = "dikopoulia@gmail.com"))
as necessary.
Package required but not available: ‘rcompanion’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Unknown package ‘prclust’ in Rd xrefs
Running examples in ‘FCPS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: TandemClustering
> ### Title: Tandem Clustering
> ### Aliases: TandemClustering
> ### Keywords: TandemClustering
> 
> ### ** Examples
> 
> data('Hepta')
> out=TandemClustering(Hepta$Data,ClusterNo=7,PlotIt=FALSE)
Subordinate clustering package (clustrd) is missing. No computations are performed.
            Please install the package which is defined in "Suggests".
Subordinate clustering package (clustrd) is missing. No computations are performed.
            Please install the package which is defined in "Suggests".
Warning in ClusterRenameDescendingSize(Cls1) :
  ClusterRenameDescendingSize: Only one unique label in Cls given. Nothing to rename.
Error in which(Cls1 == 1) : 
  'list' object cannot be coerced to type 'double'
Calls: TandemClustering -> which
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
ModelBasedVarSelClustering 3.812  0.088   7.153
Maintainer: ‘Lealand Morin <lealand.morin@ucf.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Guillermo Mestre Marcos <guillermo.mestre@comillas.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘FTS_identification.Rd’:
    https://doi.org/10.1016/j.csda.2020.107108
    https://doi.org/10.1016/j.ijepes.2020.106083
    https://doi.org/10.1016/j.jmva.2017.08.004
  File ‘fit_ARHp_FPCA.Rd’:
    https://doi.org/10.1080/01621459.2014.909317
  File ‘obtain_FACF.Rd’:
    https://doi.org/10.1016/j.csda.2020.107108
    https://doi.org/10.1016/j.ijepes.2020.106083
    https://doi.org/10.1016/j.jmva.2017.08.004
  File ‘obtain_FPACF.Rd’:
    https://doi.org/10.1016/j.csda.2020.107108
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fdasrvf’

Package suggested but not available for checking: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fdapace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fdapace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tomasz",
                      family = "Gorecki",
                      role = "aut"),
               person(given = "Lukasz",
                      family = "Smaga",
                      role = c("aut", "cre"),
                      email = "ls@amu.edu.pl"))
as necessary.
Packages required but not available: 'fda', 'doBy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) simulation_model9.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{ci}{A vector of 2 values containing $c_{1i}$ and $c_{2i}$ in the contamination
       |                                              ^
checkRd: (-1) simulation_model9.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{ci}{A vector of 2 values containing $c_{1i}$ and $c_{2i}$ in the contamination
       |                                                           ^
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fdapace', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fda.Rcheck/00install.out’ for details.
Packages required but not available: 'fdapace', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tolerance’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alessia Pini <alessia.pini@polimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessia",
                      family = "Pini",
                      role = c("aut", "cre"),
                      email = "alessia.pini@polimi.it"),
               person(given = "Simone",
                      family = "Vantini",
                      role = "aut"))
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Note: skipping ‘FLAM_canada.Rnw’ due to unavailable dependencies: 'fda'
Note: skipping ‘FLAM_fuel.Rnw’ due to unavailable dependencies: 'fda'
Note: skipping ‘FLAM_viscosity.Rnw’ due to unavailable dependencies: 'fda'
Note: skipping ‘density-on-scalar_birth.Rnw’ due to unavailable dependencies:
  'fda'
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'arulesViz', 'FactoMineR'

Packages suggested but not available for checking:
  'car', 'caret', 'questionr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joshua Millstein <joshua.millstein@usc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiongzhi Chen <xiongzhi.chen@wsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiongzhi",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "xiongzhi.chen@wsu.edu"),
               person(given = c("Rebecca", "W."),
                      family = "Doerge",
                      role = "aut",
                      email = "rwdoerge@andrew.cmu.edu"))
as necessary.
checkRd: (-1) p.fdr.Rd:30: Lost braces
    30 | \item{adjust.method}{A string used to identify the p-value and false discovery rate adjustment method. Defaults to \code{BH}. Options are \code{BH}, \code{BY}, code{Bon},\code{Holm}, \code{Hoch}, and \code{Sidak}.}
       |                                                                                                                                                                     ^
Maintainer: ‘Stan Pounds <stanley.pounds@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stan",
                    family = "Pounds",
                    role = c("aut", "cre"),
                    email = "stanley.pounds@stjude.org")
as necessary.
Maintainer: ‘Valentina Masarotto <v.masarotto@math.leidenuniv.nl>’

The Description field contains
  in Masarotto, Panaretos & Zemel (2022) <arXiv:2212.04797>.  - perform a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Habil Zare <zare@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Habil",
                    family = "Zare",
                    role = c("aut", "cre"),
                    email = "zare@u.washington.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Henna D. Bhramdat <bhramdath@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Henna", "D."),
                    family = "Bhramdat",
                    role = c("aut", "cre"),
                    email = "bhramdath@ufl.edu")
as necessary.
Packages required but not available: 'DatabaseConnector', 'Andromeda'

Package suggested but not available for checking: ‘Eunomia’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

Packages suggested but not available for checking:
  'did', 'DIDmultiplegtDYN', 'HonestDiDFEct'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "J."),
                    family = "Leeper",
                    role = c("aut", "cre"),
                    email = "thosjleeper@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Maintainer: ‘Thuan Nguyen <nguythua@ohsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiming",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Jianyang",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("J.", "Sunil"),
                      family = "Rao",
                      role = "aut"),
               person(given = "Thuan",
                      family = "Nguyen",
                      role = c("aut", "cre"),
                      email = "nguythua@ohsu.edu"))
as necessary.
Maintainer: ‘Pablo Saz Parkinson <sazpark2@gmail.com>’

The Description field contains
  Support Center (http://fermi.gsfc.nasa.gov/ssc/).
Please enclose URLs in angle brackets (<...>).
Package required but not available: ‘tourr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘timetk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ian Kopacka <ian.kopacka@ages.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ian",
                    family = "Kopacka",
                    role = c("aut", "cre"),
                    email = "ian.kopacka@ages.at")
as necessary.
Unexported object imported by a ':::' call: ‘bit:::R_bit_as_hi’
  See the note in ?`:::` about the use of this operator.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_cplx.Rd’ ‘add_l2nm.Rd’ ‘can_repr.Rd’ ‘cross.R’ ‘fft.R’
    ‘fftab.Rd’ ‘fourier_frequencies.Rd’ ‘frequency.R’ ‘get.R’ ‘get_fx.Rd’
    ‘get_rect.Rd’ ‘has_cplx.Rd’ ‘internal.R’ ‘plot.R’ ‘repr.R’
    ‘to_cplx.Rd’
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karim Rahim <karim.rahim@queensu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karim",
                    family = "Rahim",
                    role = c("aut", "cre"),
                    email = "karim.rahim@queensu.ca")
as necessary.
Maintainer: ‘Dariush Najarzadeh <D_Najarzadeh@sbu.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dariush",
                    family = "Najarzadeh",
                    role = c("aut", "cre"),
                    email = "d_najarzadeh@sbu.ac.ir")
as necessary.
Package required but not available: ‘refund’

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fgeo.plot.Rcheck/00install.out’ for details.
Package required but not available: ‘fgeo.plot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Clayton", "Vieira", "Fraga"),
                      family = "Filho",
                      role = c("aut", "cre"),
                      email = "forestgrowthsoftware@gmail.com"),
               person(given = c("Ana", "Paula"),
                      family = "Simiqueli",
                      role = "aut"),
               person(given = c("Gilson", "Fernandes", "da"),
                      family = "Silva",
                      role = "aut"),
               person(given = "Miqueias",
                      family = "Fernandes",
                      role = "aut"),
               person(given = c("Wagner", "Amorim", "da", "Silva"),
                      family = "Altoe",
                      role = "aut"))
as necessary.
checkRd: (-1) contemParametros.Rd:19: Lost braces
    19 | \item{exclui3pontos}{verify por ... ? in f<-function(a, ...){ }}
       |                                                             ^
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffmann",
                    role = c("aut", "cre"),
                    email = "tjhoffm@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running massageExamples to create ‘fhircrackr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpVYl6Uu/filed13db546b85fc/fhir_load_design.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘oeli’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ramon Oller <ramon.oller@uvic.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Oller",
                      role = c("aut", "cre"),
                      email = "ramon.oller@uvic.cat"),
               person(given = "Klaus",
                      family = "Langohr",
                      role = "aut"))
as necessary.
Maintainer: ‘Natalya Pya Arnqvist <nat.pya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalya", "Pya"),
                      family = "Arnqvist",
                      role = c("aut", "cre"),
                      email = "nat.pya@gmail.com"),
               person(given = c("Sara", "Sjöstedt"),
                      family = "de Luna",
                      role = "aut"),
               person(given = "Konrad",
                      family = "Abramowicz",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphGBHJs/ltx91e735e575eaa/nonlinearities.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fido.Rcheck/00install.out’ for details.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FIESTAutils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FIESTAutils.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpq20wL5/Rfdbb4345089196': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
install log ‘’ does not exist
Maintainer: ‘Kridsadakorn Chaichoompu <kridsadakorn@biostatgen.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'haven', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xuanhua(Peter) Yin <peteryin.sju@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuanhua",
                      family = "Yin",
                      role = "aut",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"),
               person(given = "Xuanhua",
                      family = "Yin",
                      role = "cre",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘FinanceGraphs-customization.Rmd’ using rmarkdown
--- finished re-building ‘FinanceGraphs-customization.Rmd’

--- re-building ‘Time-Series-dygraph.Rmd’ using rmarkdown

Quitting from Time-Series-dygraph.Rmd:372-376 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fg_tq_divs()`:
! Tidyquant not installed, cannot use fg_tq_divs
---
Backtrace:
    ▆
 1. ├─data.table::rbindlist(list(fg_tq_divs(c("IBM")), fg_av_earnings(earnings_ibm)))
 2. └─FinanceGraphs::fg_tq_divs(c("IBM"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Time-Series-dygraph.Rmd' failed with diagnostics:
Tidyquant not installed, cannot use fg_tq_divs
--- failed re-building ‘Time-Series-dygraph.Rmd’

--- re-building ‘Time-Series-scatterplot.Rmd’ using rmarkdown
--- finished re-building ‘Time-Series-scatterplot.Rmd’

SUMMARY: processing the following file failed:
  ‘Time-Series-dygraph.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/findSVI.Rcheck/00install.out’ for details.
Maintainer: ‘Thibault Sellam <thibault.sellam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thibault",
                    family = "Sellam",
                    role = c("aut", "cre"),
                    email = "thibault.sellam@gmail.com")
as necessary.
Maintainer: ‘Reiichiro Nakamichi <nakamichi_reiichiro33@fra.go.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Reiichiro",
                      family = "Nakamichi",
                      role = c("aut", "cre"),
                      email = "nakamichi_reiichiro33@fra.go.jp"),
               person(given = "Hirohisa",
                      family = "Kishino",
                      role = "aut"),
               person(given = "Shuichi",
                      family = "Kitada",
                      role = "aut"))
as necessary.
Packages required but not available: 'tune', 'parsnip', 'workflows'

Packages suggested but not available for checking:
  'discrim', 'klaR', 'recipes', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'klaR', 'GGally', 'car', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpmpYmP5/Rfdb88964d4a4f2': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘00.helpers.R’ ‘01.firm_register.R’ ‘02.FOandFM.R’ ‘03.people.R’
    ‘04.FF_either.R’ ‘05.network&graph.R’
Packages required but not available: 'ggpubr', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'modeltime', 'parsnip', 'recipes', 'rsample', 'rules', 'timetk',
  'tune', 'workflows'

Packages suggested but not available for checking:
  'AzureStor', 'qs', 'sparklyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggspatial', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘zoomerjoin’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = c("aut", "cre"),
                      email = "charles.bouveyron@gmail.com"),
               person(given = c("Camille", "Brunet", "&", "Nicolas"),
                      family = "Jouvin.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gary A. Nelson <gary.nelson@mass.gov>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprHSTeQ/fileee8b69d792b2': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmprHSTeQ/fileee8b69d792b2': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'geiger', 'rfishbase'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘fishstat-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpcPO1wf/filedb8966b2ff085/capture.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cory Nissen <corynissen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cory",
                    family = "Nissen",
                    role = c("aut", "cre"),
                    email = "corynissen@gmail.com")
as necessary.
Encountered the following conversion/validation errors:
cannot open the connection
Package required but not available: ‘leafgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) fitConic.Rd:66-73: Lost braces
    66 | \code{parA }{vector of the six "ABCDEF" coefficients
       |             ^
checkRd: (-1) fitConic.Rd:67: Lost braces
    67 | \code{RSS }{'root sum square' figure of merit describing the relative fit quality}
       |            ^
checkRd: (-1) fitConic.Rd:68: Lost braces
    68 | \code{iters }{number of iterations at convergence}
       |              ^
checkRd: (-1) fitConic.Rd:69-71: Lost braces
    69 | \code{exitCode }{1 means ellipse, 2 means hyperbola, 3 means parabola.
       |                 ^
checkRd: (-1) rotateA.Rd:59: Lost braces; missing escapes or markup?
    59 | For \code{xyrot} {a Nx2 array of the x,y coordinates of the rotated data set. }
       |                  ^
Maintainer: ‘Stephen Jewson <stephen.jewson@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX .............................................................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpcZp1Yy/ltx103e732c3cc2b8/invgauss_f1fa.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'plotly', 'simlandr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘peak2d.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpSru7cA/Rfe20fd54e5f796': No space left on device

Quitting from peak2d.Rmd:44-48 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from peak2d.Rmd:44-48 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'peak2d.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘peak2d.Rmd’

sh: 1: cannot create /tmp/Rtmp6z8WGl/filee1f4452d232b3: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp6z8WGl/filee1f4452d232b3': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: <Anonymous> -> cat -> readLines -> file
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘dCOMPBin.Rd’, ‘dCorrBin.Rd’, ‘dGAMMA.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprPURcz/filee61e53ccc6c86': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmprPURcz/filee61e53ccc6c86': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘flextable’

Package suggested but not available for checking: ‘gridlayout’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrew Harris <harris@astro.umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "harris@astro.umd.edu")
as necessary.
Maintainer: ‘Markus Boenn <markus.boenn.sf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Boenn",
                    role = c("aut", "cre"),
                    email = "markus.boenn.sf@gmail.com")
as necessary.
Maintainer: ‘José Carlos Del Valle <jcval94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("José", "Carlos", "Del"),
                    family = "Valle",
                    role = c("aut", "cre"),
                    email = "jcval94@gmail.com")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Albert Y. Kim <albert.ys.kim@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) food_world_cup.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:75: Lost braces in \itemize; meant \describe ?
cannot open the connection
cannot open the connection
problems found in ‘trump_news.Rd’, ‘trump_twitter.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX ......Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp4W2lHo/ltxea3cc2954548b/mediacloud_hurricanes.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Stuart Baumann <Stuart@StuartBaumann.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Stuart", "Baumann", "&", "Margaryta"),
                      family = "Klymak",
                      role = "aut"),
               person(given = "Stuart",
                      family = "Baumann",
                      role = "cre",
                      email = "Stuart@StuartBaumann.com"))
as necessary.
Maintainer: ‘Evan Odell <evanodell91@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fixes.Rcheck/00install.out’ for details.
Running massageExamples to create ‘fixest-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpy9I5xr/filef55fe52e73491/getFixest_ssc.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpdX5d19/ltx104e6722d9b262/n_unik.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘fdasrvf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘FKFSP.Rmd’ using rmarkdown

Quitting from FKFSP.Rmd:28-34 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'NFCP'
---
Backtrace:
    ▆
 1. └─base::library(NFCP)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FKFSP.Rmd' failed with diagnostics:
there is no package called 'NFCP'
--- failed re-building ‘FKFSP.Rmd’

SUMMARY: processing the following file failed:
  ‘FKFSP.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘David P. Hofmeyr <dhofmeyr@sun.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "P."),
                    family = "Hofmeyr",
                    role = c("aut", "cre"),
                    email = "dhofmeyr@sun.ac.za")
as necessary.
Maintainer: ‘Pascal Kerschke <kerschke@uni-muenster.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘features.Rd’:
    http://dx.doi.org/10.1007/978-3-319-07494-8_9
    http://dx.doi.org/10.1145/2739480.2754642
    http://dx.doi.org/10.1145/1143997.1144085
    http://dx.doi.org/10.1145/2001576.2001690
    http://dx.doi.org/10.1109/TEVC.2014.2302006
  File ‘plotCellMapping.Rd’:
    http://dx.doi.org/10.1007/978-3-319-07494-8_9
  File ‘plotInformationContent.Rd’:
    http://dx.doi.org/10.1109/TEVC.2014.2302006
Maintainer: ‘Mátyás Mészáros <matyas.meszaros@ec.europa.eu>’

Found the following (possibly) invalid file URI:
  URI: vignettes/flagr_introduction.pdf
    From: README.md
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro_to_AME.Rmd’ using rmarkdown

Quitting from intro_to_AME.Rmd:325-329 [unnamed-chunk-32]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package `mice` needed to impute missing values. Please install it or select different options for `missing_data`.
---
Backtrace:
    ▆
 1. └─FLAME::DAME(data, holdout, missing_data = "impute", verbose = 0)
 2.   ├─base::do.call(AME, c(list(algo = "DAME", C = 0.1), input_args))
 3.   └─FLAME (local) `<fn>`(...)
 4.     └─FLAME:::preprocess(...)
 5.       └─FLAME:::check_args(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'intro_to_AME.Rmd' failed with diagnostics:
Package `mice` needed to impute missing values. Please install it or select different options for `missing_data`.
--- failed re-building ‘intro_to_AME.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_to_AME.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ashley Petersen <ashleyjpete@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashley",
                    family = "Petersen",
                    role = c("aut", "cre"),
                    email = "ashleyjpete@gmail.com")
as necessary.
checkRd: (-1) summary.flamcv.rd:8: Lost braces
     8 | This function summarizes a call to code{\link{flamCV}} and identifies the tuning parameter chosen by cross-validation.
       |                                        ^
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘projection.R’
Maintainer: ‘Scott D. Graham <scott.grah95@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Scott", "D."),
                    family = "Graham",
                    role = c("aut", "cre"),
                    email = "scott.grah95@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpuuOSWc/Rfdb4366ae9eca': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_labels.Rd’ ‘divide.Rd’ ‘extract_labels.Rd’ ‘fill_labels.Rd’
    ‘fill_values.Rd’ ‘flatten_table_list.Rd’ ‘ft_ex.Rd’ ‘ft_ex_v2.Rd’
    ‘ft_set.Rd’ ‘get_col_values.Rd’ ‘get_page.Rd’ ‘pf_ex_compact.Rd’
    ‘remove_agg.Rd’ ‘remove_bottom.Rd’ ‘remove_cols.Rd’ ‘remove_empty.Rd’
    ‘remove_k.Rd’ ‘remove_left.Rd’ ‘remove_right.Rd’ ‘remove_rows.Rd’
    ‘remove_top.Rd’ ‘replace_dec.Rd’ ‘set_page.Rd’ ‘unpivot.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpxtHGhr/filee21b9a4d695e': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpxtHGhr/filee21b9a4d695e': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘modelr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Angelo Mazza <a.mazza@unict.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mazza",
                      family = "A.",
                      role = "aut"),
               person(given = "Punzo",
                      family = "A.",
                      role = "aut"),
               person(given = "Ingrassia",
                      family = "S.",
                      role = "aut"),
               person(given = "Angelo",
                      family = "Mazza",
                      role = "cre",
                      email = "a.mazza@unict.it"))
as necessary.
Package required but not available: ‘ContaminatedMixt’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘agriutilities’

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhicheng Du <dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Stephan Struckmann <stephan.struckmann@uni-greifswald.de>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘David Gohel <david.gohel@ardata.fr>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘officer’

Packages suggested but not available for checking:
  'broom.mixed', 'officedown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Léonie Courcoul <leonie.courcoul@u-bordeaux.fr>’

The Description field contains
  Jacqmin-Gadda (2023) <arXiv:2306.16785>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggmap’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘flimo-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpQcWqcV/filee4aa313b7497f/flimobjective.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘alternative.Rmd’ using rmarkdown
--- finished re-building ‘alternative.Rmd’

--- re-building ‘exactness.Rmd’ using rmarkdown

Quitting from exactness.Rmd:141-177 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. ├─p1 %>% plotly::ggplotly() %>% plotly::hide_legend()
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'exactness.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘exactness.Rmd’

--- re-building ‘flipr.Rmd’ using rmarkdown
--- finished re-building ‘flipr.Rmd’

--- re-building ‘plausibility.Rmd’ using rmarkdown
--- finished re-building ‘plausibility.Rmd’

SUMMARY: processing the following file failed:
  ‘exactness.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ivan Popivanov <ivan.popivanov@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Popivanov",
                    role = c("aut", "cre"),
                    email = "ivan.popivanov@gmail.com")
as necessary.
Maintainer: ‘Friederike Deiters <deiters@statistik.tu-dortmund.de>’

The Description field contains
  see Kinsvater et al. (2017) <arXiv:1701.06455>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gustavo Carvalho <gustavo.bio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gustavo",
                    family = "Carvalho",
                    role = c("aut", "cre"),
                    email = "gustavo.bio@gmail.com")
as necessary.
Package required but not available: ‘Gmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) flow_embed.Rd:30: Lost braces; missing escapes or markup?
    30 | \item Don't forget to add {flow} to Suggests in your DESCRIPTION file.
       |                           ^
Maintainer: ‘Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Silvestre", "Garcia", "de", "Jalon;", "Javier", "Martinez-Lopez;", "Marta", "Gonzalez", "del", "Tanago;", "Carlos", "Alonso;", "Diego", "Garcia"),
                      family = "de Jalon",
                      role = "aut"),
               person(given = "Javier",
                      family = "Martinez-Lopez",
                      role = "cre",
                      email = "javi.martinez.lopez@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘flowdata.Rd’:
    https://doi.org/10.1007/s11269-017-1663-0
checkRd: (-1) flowdata.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{Flow}{Water flow, in m^{3}/s}
       |                              ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/flps.Rcheck/00install.out’ for details.
Maintainer: ‘Constantinos Mavridis <consmavr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Constantinos",
                      family = "Mavridis",
                      role = c("aut", "cre"),
                      email = "consmavr@gmail.com"),
               person(given = c("Ioannis", "N."),
                      family = "Athanasiadis",
                      role = "aut"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Holger Hoefling <hhoeflin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Hoefling",
                    role = c("aut", "cre"),
                    email = "hhoeflin@gmail.com")
as necessary.

The Description field contains
  <arXiv:0910.0526>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jean-Baptiste Ferdy <jean-baptiste.ferdy@univ-tlse3.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean-Baptiste",
                    family = "Ferdy",
                    role = c("aut", "cre"),
                    email = "jean-baptiste.ferdy@univ-tlse3.fr")
as necessary.
Maintainer: ‘Alberto Hornero <alberto@hornero.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alberto",
                      family = "Hornero",
                      role = c("aut", "cre"),
                      email = "alberto@hornero.es"),
               person(given = "Nastassia",
                      family = "Vilfan",
                      role = "aut"),
               person(given = "Christiaan",
                      family = "van der Tol",
                      role = "aut"),
               person(given = "Onno",
                      family = "Muller",
                      role = "aut"),
               person(given = "Uwe",
                      family = "Rascher",
                      role = "aut"),
               person(given = "Wouter",
                      family = "Verhoef",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘fluspect.Rd’:
    https://doi.org/10.1016/j.rse.2016.09.017
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FMAT.Rcheck/00install.out’ for details.
Author field differs from that derived from Authors@R
  Author:    ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (JOSS reviewer, <https://orcid.org/0000-0001-8172-3603>)’
  Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-8172-3603>)’
Maintainer: ‘Shwetank Lall <shwetanklall@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘smacof’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpS9CTJa/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
install log ‘’ does not exist
Package required but not available: ‘refund’

Package suggested but not available for checking: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Niels G. Waller <nwaller@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Niels", "G."),
                    family = "Waller",
                    role = c("aut", "cre"),
                    email = "nwaller@umn.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) FMP.Rd:30: Lost braces; missing escapes or markup?
    30 | \eqn{m(\theta) = b_0 + b_1 \theta + b_2 \theta^2 + b_3 \theta^3}. Acceptable values of k = {0,1,2,3}. According to 
       |                                                                                            ^
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Invalid citation information in ‘inst/CITATION’:
  Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Minato Nakazawa <minatonakazawa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Minato",
                    family = "Nakazawa",
                    role = c("aut", "cre"),
                    email = "minatonakazawa@gmail.com")
as necessary.
Maintainer: ‘Luis Benites Sanchez <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"),
               person(given = c("Rocio", "Paola"),
                      family = "Maehara",
                      role = "aut"),
               person(given = c("Victor", "Hugo"),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Wilson <hmp.R.package@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Geoff",
                      family = "Robinson",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Wilson",
                      role = "cre",
                      email = "hmp.R.package@gmail.com"))
as necessary.
checkRd: (-1) Estable.Rd:40: Lost braces
    40 |   \code{dEstable}{ gives the density function;}
       |                  ^
checkRd: (-1) Estable.Rd:41: Lost braces
    41 |   \code{pEstable}{ gives the distribution function or its complement;}
       |                  ^
checkRd: (-1) Estable.Rd:42: Lost braces
    42 |   \code{qEstable}{ gives quantiles;}
       |                  ^
checkRd: (-1) Estable.Rd:43-56: Lost braces
    43 |   \code{tailsEstable}{ returns a list with the following components
       |                      ^
checkRd: (-1) FMstable.Rd:50: Lost braces
    50 |   \code{dFMstable}{ gives the density function;}
       |                   ^
checkRd: (-1) FMstable.Rd:51: Lost braces
    51 |   \code{pFMstable}{ gives the distribution function or its complement;}
       |                   ^
checkRd: (-1) FMstable.Rd:52: Lost braces
    52 |   \code{qFMstable}{ gives quantiles;}
       |                   ^
checkRd: (-1) FMstable.Rd:53-66: Lost braces
    53 |   \code{tailsFMstable}{  returns a list with the following components
       |                       ^
Maintainer: ‘Stefan Theussl <Stefan.Theussl@R-Project.org>’

The Description field contains
  <arXiv:0911.2093> to manage, investigate and analyze bivariate and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running examples in ‘fmx-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as.fmx.mixEM
> ### Title: Convert 'mixEM' Objects to fmx Class
> ### Aliases: as.fmx.mixEM
> 
> ### ** Examples
> 
> library(mixtools)
Error in library(mixtools) : there is no package called ‘mixtools’
Execution halted
Maintainer: ‘Haeran Cho <haeran.cho@bristol.ac.uk>’

The Description field contains
  methodology and Owens, Cho and Barigozzi (2024+) <arXiv:2301.11675>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running examples in ‘fntl-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: trunc
> ### Title: Functions for Truncated Distributions
> ### Aliases: trunc d_trunc p_trunc q_trunc r_trunc
> 
> ### ** Examples
> 
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
Execution halted
Maintainer: ‘Mona Azadkia <monaazadkia@gmail.com>’

The Description field contains
  simple measure of conditional dependence" <arXiv:1910.12327>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpXEFeZU/ltxebf0c17bad978/getChiSqStat.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
checkRd: (-1) navbar_page.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) navbar_page.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) navbar_page.Rd:38: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'DiagrammeR', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Leo N. Geppert <geppert@statistik.uni-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Leo", "N."),
                      family = "Geppert",
                      role = c("aut", "cre"),
                      email = "geppert@statistik.uni-dortmund.de"),
               person(given = "Peter",
                      family = "Gnändinger",
                      role = "ctb"),
               person(given = "Katja",
                      family = "Ickstadt",
                      role = "ctb"),
               person(given = "Björn",
                      family = "Bornkamp",
                      role = "ctb"),
               person(given = "Arno",
                      family = "Fritsch",
                      role = "ctb"),
               person(given = "Oliver",
                      family = "Kuß",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘airport_footprint.R’ ‘airport_footprint.Rd’ ‘latlong_footprint.R’
    ‘latlong_footprint.Rd’
Maintainer: ‘Tianshu Chen <tianshu129@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianshu",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "tianshu129@163.com")
as necessary.
Maintainer: ‘Marcos Bella-Fernández <marcosbellafernandez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcos",
                    family = "Bella-Fernández",
                    role = c("aut", "cre"),
                    email = "marcosbellafernandez@gmail.com")
as necessary.
Maintainer: ‘Rodrigo Aluizio <r.aluizio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rodrigo",
                    family = "Aluizio",
                    role = c("aut", "cre"),
                    email = "r.aluizio@gmail.com")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Georg M. Goerg <im@gmge.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) foreca.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:78-80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:81-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:84-87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:91-92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) initialize_weightvector.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:60-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:64-65: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Eran Raviv  <eeraviv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eran",
                    family = "Raviv",
                    role = c("aut", "cre"),
                    email = "eeraviv@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/forecasteR.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ForecastingEnsembles.Rcheck/00install.out’ for details.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpp9ln4g/filef448f139e862f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpp9ln4g/filef448f139e862f': No such file or directory
Error in file(con, "r") : cannot open the connection
Running massageExamples to create ‘forecast-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpsFELYv/filefbc86732a2028/findfrequency.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tom Wilson <tpw2@aber.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Melanie Ganz (2014) <arXiv:1410.2838>.  Methods for calculating the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Haddouchi Maïssae <maissaem7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haddouchi",
                    family = "Maïssae",
                    role = c("aut", "cre"),
                    email = "maissaem7@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/forestecology.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin Lu <b.lu@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benjamin",
                      family = "Lu",
                      role = c("aut", "cre"),
                      email = "b.lu@berkeley.edu"),
               person(given = "Johanna",
                      family = "Hardin",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Running massageExamples to create ‘forestGYM-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpXT2WZa/filee9c776e0398b7/clutter_simopt.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Packages required but not available: 'systemfit', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nick Kennedy <r@nick-kennedy.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Kennedy",
                    role = c("aut", "cre"),
                    email = "r@nick-kennedy.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Running ‘data_generator.R’ [0s/0s]
  Running ‘forestplot2_vtests.R’ [2s/2s]
  Running ‘test_visual_w_cochrane_mdata.R’ [1s/1s]
  Running ‘test_visual_with_Greg.R’ [0s/0s]
  Running ‘testthat.R’ [3s/4s]
  Running ‘vtest_from_vignette.R’ [1s/2s]
Running the tests in ‘tests/test_visual_with_Greg.R’ failed.
Complete output:
  > library(Greg)
  Error in library(Greg) : there is no package called 'Greg'
  Execution halted
checkRd: (-1) process_pcl.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{pavd}{logical input to include Plant Area Volume Density Plot from {plot_pavd},
       |                                                                          ^
sh: 1: cannot create /tmp/RtmprJPCsi/xshellebf8c44b7a444: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmprJPCsi/xshellebf8c44b7a444': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Package required but not available: ‘ggimage’

Package suggested but not available for checking: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘forestsearch.Rmd’ using rmarkdown

Quitting from forestsearch.Rmd:216-223 [grf-trees]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.policy_tree()`:
! Package "DiagrammeR" must be installed to plot trees.
---
Backtrace:
    ▆
 1. ├─base::plot(...)
 2. └─policytree:::plot.policy_tree(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'forestsearch.Rmd' failed with diagnostics:
Package "DiagrammeR" must be installed to plot trees.
--- failed re-building ‘forestsearch.Rmd’

SUMMARY: processing the following file failed:
  ‘forestsearch.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .................Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpkv6jgp/ltx10749371c647f3/plot_sg_results.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Srihari Jaganathan <sriharitn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Srihari",
                    family = "Jaganathan",
                    role = c("aut", "cre"),
                    email = "sriharitn@gmail.com")
as necessary.
Running massageExamples to create ‘formatters-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Package required but not available: ‘onbrand’

Packages suggested but not available for checking:
  'flextable', 'ggpubr', 'janitor', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpOd81RF/Rfebe1d86747b1': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Error(s) in re-building vignettes:
  ...
--- re-building ‘forplo_vignette.Rmd’ using rmarkdown

Quitting from forplo_vignette.Rmd:491-540 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'meta'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'forplo_vignette.Rmd' failed with diagnostics:
there is no package called 'meta'
--- failed re-building ‘forplo_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘forplo_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Lorenzo Fabbri <lorenzo.fabbri92sm@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘str_extract_part.R’
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Overview.Rmd’ using rmarkdown

Quitting from Overview.Rmd:24-33 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'FactoMineR'
---
Backtrace:
    ▆
 1. └─base::library(FactoMineR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Overview.Rmd' failed with diagnostics:
there is no package called 'FactoMineR'
--- failed re-building ‘Overview.Rmd’

SUMMARY: processing the following file failed:
  ‘Overview.Rmd’

Error: Vignette re-building failed.
Execution halted
Running massageExamples to create ‘fossilbrush-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Maintainer: ‘Matthew J. Vavrek <matthew@matthewvavrek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "J."),
                    family = "Vavrek",
                    role = c("aut", "cre"),
                    email = "matthew@matthewvavrek.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FossilSim.Rcheck/00install.out’ for details.
Packages required but not available: 'FossilSim', 'TreeSim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Milton T Drott <mtd66@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Milton", "T"),
                    family = "Drott",
                    role = c("aut", "cre"),
                    email = "mtd66@cornell.edu")
as necessary.
checkRd: (-1) FourgameteP.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Guillermo Basulto-Elias <guillermobasulto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guillermo",
                    family = "Basulto-Elias",
                    role = c("aut", "cre"),
                    email = "guillermobasulto@gmail.com")
as necessary.
Maintainer: ‘Salvatore D. Tomarchio <daniele.tomarchio@unict.it>’

The Description field contains
  Tomarchio et al. (2020) <arXiv:2107.04330>.  The matrix-variate normal
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jinlu Cao <caojinlu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jinlu",
                    family = "Cao",
                    role = c("aut", "cre"),
                    email = "caojinlu@gmail.com")
as necessary.
Maintainer: ‘Salil Koner <salil.koner@duke.edu>’

The Description field contains
  (2023) <arXiv:2302.05612> respectively.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nan Lin <edmondlinnan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nan",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "edmondlinnan@gmail.com"),
               person(given = "Momiao",
                      family = "Xiong",
                      role = "aut"))
as necessary.
Comparing ‘fpc-Ex.Rout’ to ‘fpc-Ex.Rout.save’:
69,70d68
< Warning in plot.new() :
<   Cannot open temporary file '/tmp/Rtmp9pviUY/pdffbae9190e667b' for compression (reason: No space left on device); compression has been turned off for this device
Packages required but not available: 'klaR', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘S.Sampath <sampath1959@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "S.Sampath",
                    role = c("aut", "cre"),
                    email = "sampath1959@gmail.com")
as necessary.
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |     ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |                                        ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |                                              ^
checkRd: (-1) Fpop.Rd:9: Lost braces; missing escapes or markup?
     9 | m_{i+1}), where the indicator function I counts the number of
       |   ^
Maintainer: ‘Guillem Rigaill <guillem.rigaill@inrae.fr>’

The Description field contains
  <arXiv:1004.0887> algorithm for detecting multiple changepoints in the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fpp3.Rcheck/00install.out’ for details.
Maintainer: ‘Juan J. Serrano-Perez <jjserra@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patricia",
                      family = "Roman-Roman",
                      role = "aut"),
               person(given = c("Juan", "J."),
                      family = "Serrano-Perez",
                      role = c("aut", "cre"),
                      email = "jjserra@ugr.es"),
               person(given = "Francisco",
                      family = "Torres-Ruiz.",
                      role = "aut"))
as necessary.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpnKdhJU/Rd2pdfed5af2b1bd173/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Encountered the following conversion/validation errors:
cannot open the connection
cannot open the connection
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/RobinHankin/frab
which should likely be
  https://github.com/RobinHankin/frab/issues
instead.
Maintainer: ‘Shawn Garbett <Shawn@Garbett.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shawn",
                      family = "Garbett",
                      role = c("aut", "cre"),
                      email = "shawn@garbett.org"),
               person(given = "Darren",
                      family = "Tyson",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘fracprolif-package.Rd’:
    \keyword{ package, quiescence, growth }
Running massageExamples to create ‘fracprolif-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpyfcJeM/filef44e37f4073f6/q.mle.emg.estimate.R': No space left on device
Execution halted
 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
No examples, no tests, no vignettes
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Don",
                      family = "Percival",
                      role = "aut",
                      email = "dbp@apl.washington.edu"),
               person(given = "Tilmann",
                      family = "Gneiting",
                      role = "aut",
                      email = "tilmann@stat.washington.edu"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘customizing-fractal-trees.Rmd’ using rmarkdown
--- finished re-building ‘customizing-fractal-trees.Rmd’

--- re-building ‘intro-to-fractal-forest.Rmd’ using rmarkdown

Quitting from intro-to-fractal-forest.Rmd:21-43 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'forestmangr'
---
Backtrace:
    ▆
 1. └─base::library(forestmangr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'intro-to-fractal-forest.Rmd' failed with diagnostics:
there is no package called 'forestmangr'
--- failed re-building ‘intro-to-fractal-forest.Rmd’

SUMMARY: processing the following file failed:
  ‘intro-to-fractal-forest.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Philipp Hermann <philipp.hermann@jku.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Philipp",
                      family = "Hermann",
                      role = c("aut", "cre"),
                      email = "philipp.hermann@jku.at"),
               person(given = "Jozef",
                      family = "Kiselak",
                      role = "aut"),
               person(given = "Milan",
                      family = "Stehlik",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/PhHermann/FractalParameterEstimation
which should likely be
  https://github.com/PhHermann/FractalParameterEstimation/issues
instead.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpDgT4uf/libloc_196_a9ffc2431b13e1c2.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Bill Venables <bill.venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Maintainer: ‘OuYang Ming <oula2004@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "OuYang",
                    family = "Ming",
                    role = c("aut", "cre"),
                    email = "oula2004@163.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpcwQ0mc/Rff47e26bac55cc': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Packages required but not available: 'meta', 'netmeta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Theodor Adrian Balan <hello@tbalan.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Theodor", "Adrian"),
                      family = "Balan",
                      role = c("aut", "cre"),
                      email = "hello@tbalan.com"),
               person(given = "Hein",
                      family = "Putter",
                      role = "aut"))
as necessary.
checkRd: (-1) emfrail_control.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:55-57: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Maengseok Noh <msnoh@pknu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Il", "Do"),
                      family = "Ha",
                      role = "aut"),
               person(given = "Maengseok",
                      family = "Noh",
                      role = c("aut", "cre"),
                      email = "msnoh@pknu.ac.kr"),
               person(given = "Jiwoong",
                      family = "Kim",
                      role = "aut"),
               person(given = "Youngjo",
                      family = "Lee",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpG8zD9p/filefbf617a1779e5/simdataCL.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Output for data("hdCLdata", package = "frailtyMMpen"):
  Fatal error: cannot create 'R_TempDir'
Output for data("simdataCL", package = "frailtyMMpen"):
  Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘frailtypack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'janitor', 'rio'

Package suggested but not available for checking: ‘badger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Molina <dmolinam@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Arcos",
                      role = "aut",
                      email = "arcos@ugr.es"),
               person(given = c("Maria", "del", "Mar"),
                      family = "Rueda",
                      role = "aut",
                      email = "mrueda@ugr.es"),
               person(given = c("Maria", "Giovanna"),
                      family = "Ranalli",
                      role = "aut",
                      email = "giovanna.ranalli@stat.unipg.it"),
               person(given = "David",
                      family = "Molina",
                      role = c("aut", "cre"),
                      email = "dmolinam@ugr.es"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/framework.Rcheck/00install.out’ for details.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabor",
                      family = "Csardi",
                      role = "aut"),
               person(given = "Titus",
                      family = "Wormer",
                      role = "aut"),
               person(given = "Maciej",
                      family = "Ceglowski",
                      role = "aut"),
               person(given = c("Jacob", "R."),
                      family = "Rideout",
                      role = "aut"),
               person(given = c("and", "Kent", "S."),
                      family = "Johnson",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = "cre",
                      email = "csardi.gabor@gmail.com"))
as necessary.
Maintainer: ‘Guanqiao Ding <gding16@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guanqiao",
                    family = "Ding",
                    role = c("aut", "cre"),
                    email = "gding16@gmail.com")
as necessary.
Maintainer: ‘Jeonghwa Lee <leejeonghwa5@gmail.com>’

The Description field contains
  distributions. (Lee, J. (2023) <arXiv:2209.01516>.)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Christoph Bergmeir <c.bergmeir@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lala", "Septem"),
                      family = "Riza",
                      role = "aut"),
               person(given = "Christoph",
                      family = "Bergmeir",
                      role = c("aut", "cre"),
                      email = "c.bergmeir@decsai.ugr.es"),
               person(given = "Francisco",
                      family = "Herrera",
                      role = "aut"),
               person(given = c("Jose", "Manuel"),
                      family = "Benitez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) summary.frbs.Rd:32: Lost braces
    32 |                           \code{"GAUSSIAN"}, code{"TRIANGLE"}, \code{"TRAPEZOID"}, \code{"SIGMOID"}, and \code{"BELL"}.
       |                                                  ^
checkRd: (-1) summary.frbs.Rd:60: Lost braces; missing escapes or markup?
    60 |          {4.0, 0.23, 0.43, 0.53, 0.73} on its column. It means that the label a.2 of variable v.1 
       |          ^
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fdadensity', 'fdapace'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Note: skipping ‘free1way.Rnw’ due to unavailable dependencies:
  'Hmisc', 'rms'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Athanasse Zafirov <zafirov@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘WGCNA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘FCEmulator.Rmd’ using rmarkdown

Quitting from FCEmulator.Rmd:43-51 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/RtmpNriwdr/filefb8c858c1f59b'
---
Backtrace:
    ▆
 1. ├─base::with(...)
 2. └─base::with.default(...)
 3.   └─base::eval(substitute(expr), data, enclos = parent.frame())
 4.     └─base::eval(substitute(expr), data, enclos = parent.frame())
 5.       ├─base::plot(...)
 6.       └─graphics::plot.default(...)
 7.         └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FCEmulator.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpNriwdr/filefb8c858c1f59b'
--- failed re-building ‘FCEmulator.Rmd’

SUMMARY: processing the following file failed:
  ‘FCEmulator.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Kenneth W. Moffett <kmoffet@siue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Feldman",
                      role = "aut",
                      email = "tfeldma@siue.edu"),
               person(given = c("Kenneth", "W."),
                      family = "Moffett",
                      role = c("aut", "cre"),
                      email = "kmoffet@siue.edu"))
as necessary.
Maintainer: ‘Kidzinski L. <lukasz.kidzinski@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hormann",
                      family = "S.",
                      role = "aut"),
               person(given = "Kidzinski",
                      family = "L.",
                      role = c("aut", "cre"),
                      email = "lukasz.kidzinski@stanford.edu"))
as necessary.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("aut", "cre"),
                      email = "normmatloff@gmail.com"),
               person(given = "Yingkang",
                      family = "Xie",
                      role = "aut",
                      email = "yingkang.xie@gmail.com"))
as necessary.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Masaaki Sudo <masaaki@sudori.info>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Annegret Grimm <annegret.grimm@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Annegret", "Grimm", "&", "Klaus"),
                      family = "Henle",
                      role = "aut"),
               person(given = "Annegret",
                      family = "Grimm",
                      role = "cre",
                      email = "annegret.grimm@ufz.de"))
as necessary.
Maintainer: ‘Alistair Wilcox <frequency@alistairwilcox.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alistair",
                    family = "Wilcox",
                    role = c("aut", "cre"),
                    email = "frequency@alistairwilcox.com")
as necessary.
Maintainer: ‘Jose Gerardo Tamez-Pena <jose.tamezpena@tec.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "Gerardo"),
                      family = "Tamez-Pena",
                      role = c("aut", "cre"),
                      email = "jose.tamezpena@tec.mx"),
               person(given = "Antonio",
                      family = "Martinez-Torteya",
                      role = "aut"),
               person(given = "Israel",
                      family = "Alanis",
                      role = "aut"),
               person(given = "Jorge",
                      family = "Orozco",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'epiR', 'DescTools', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/Rtmp4DGoVQ/filefe44b4659ea7c', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp4DGoVQ/filefe44b4659ea7c/adminlte_color.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpDPHcdh/filefbe0726b720db/number_friendly.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘friendlynumber-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmplncMgu/filefbec21b75b626/nth_friendly.R': No space left on device
Execution halted
 NONE
Warning in file() :
  cannot open file '/tmp/RtmpGmkc80/Rffbf3a193286f4': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpjE9vgI/file105ad35990a80f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpjE9vgI/file105ad35990a80f': No such file or directory
Error in file(con, "r") : cannot open the connection
Warning in file(con, "w") :
  cannot open file '/tmp/RtmpskjY7E/file105bb5a3e3043': No space left on device
Error in file(con, "w") : cannot open the connection
Execution halted
Packages required but not available: 'fmesher', 'Hmisc', 'ggpubr'

Package suggested but not available for checking: ‘dggrids’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lijun Wang <szcfweiya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lijun",
                    family = "Wang",
                    role = c("aut", "cre", "cph"),
                    email = "szcfweiya@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp1ub761/Rffabc25f91d65f': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Coelli",
                      role = "aut"),
               person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aidan Lakshman <ahl27@pitt.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/ahl27/froth/issues/new/choose
which should likely be
  https://github.com/ahl27/froth/issues/new/choose/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_data_frame.Rd’ ‘as_list.Rd’ ‘dplyr_methods.Rd’ ‘fr_schema.R’
    ‘fr_tdr.R’ ‘read_fr_tdr.R’ ‘update_field.R’ ‘update_field.Rd’
Package required but not available: ‘cna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carlos Miranda <carlos.miranda@unavarra.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Miranda",
                    role = c("aut", "cre"),
                    email = "carlos.miranda@unavarra.es")
as necessary.
Packages required but not available: 'car', 'dunn.test'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error in bzfile(file, "wb") : cannot open the connection
  Calls: <Anonymous> -> resaveRdaFiles -> save -> bzfile
  In addition: Warning message:
  In bzfile(file, "wb") :
    cannot open bzip2-ed file '/tmp/RtmpmKyN8O/file10b7d1c418eed', probable reason 'No space left on device'
  Execution halted
Maintainer: ‘Lars Kotthoff <larsko@uwyo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Romanski",
                      role = "aut"),
               person(given = "Lars",
                      family = "Kotthoff",
                      role = c("aut", "cre"),
                      email = "larsko@uwyo.edu"),
               person(given = "Patrick",
                      family = "Schratz",
                      role = "aut"))
as necessary.
checkRd: (-1) FSelector-package.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) relief.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) relief.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Michela Battauz <michela.battauz@uniud.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michela",
                    family = "Battauz",
                    role = c("aut", "cre"),
                    email = "michela.battauz@uniud.it")
as necessary.
checkRd: (-1) report.Rd:18: Lost braces; missing escapes or markup?
    18 |         \item{las}{numeric in {0,1,2,3}; the style of axis labels (see \code{\link{par}}).}
       |                               ^
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘fslr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp0k85T8/file1077cf5349f938/fslmul.help.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Felix Schönbrodt <felix@nicebread.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Felix",
                      family = "Schönbrodt",
                      role = c("aut", "cre"),
                      email = "felix@nicebread.de"),
               person(given = "Lara",
                      family = "Stas",
                      role = "aut"),
               person(given = "Tom",
                      family = "Loeys",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Encountered the following errors for NEWS.Rd HTML conversion/validation:
cannot open the connection
cannot open the connection
problem found in ‘fsi_add_cs.Rd’
Packages required but not available: 'flexsurv', 'survAUC', 'SurvMetrics'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicolas Ewen <nicolas.ewen.math@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolas",
                    family = "Ewen",
                    role = c("aut", "cre"),
                    email = "nicolas.ewen.math@gmail.com")
as necessary.
Maintainer: ‘Sarah P. Flanagan <spflanagan.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sarah", "P."),
                      family = "Flanagan",
                      role = c("aut", "cre"),
                      email = "spflanagan.phd@gmail.com"),
               person(given = c("Adam", "G."),
                      family = "Jones",
                      role = "aut"))
as necessary.
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@umich.edu")
as necessary.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tobias Setz <tobias.setz@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diethelm",
                      family = "Wuertz",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Setz",
                      role = "cre",
                      email = "tobias.setz@live.com"),
               person(given = "Yohan",
                      family = "Chalabi",
                      role = "ctb"))
as necessary.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Sare Amerifar <sare.ameri.01@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sare",
                    family = "Amerifar",
                    role = c("aut", "cre"),
                    email = "sare.ameri.01@gmail.com")
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Running massageExamples to create ‘ftrCOOL-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpndbmIp/file10b6e058f163b4/readASAdir.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpoPE0O8/file10bd8050cec624': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpoPE0O8/file10bd8050cec624': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'sde', 'fda', 'fdapace'

Package suggested but not available for checking: ‘meboot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sde', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘fude-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bind_fude
> ### Title: Bind multiple Fude Polygon data objects
> ### Aliases: bind_fude
> 
> ### ** Examples
> 
> path <- system.file("extdata", "castle.zip", package = "fude")
> d1 <- read_fude(path, quiet = TRUE)
Error in utils::unzip(path, exdir = exdir) : 
  cannot open file '/tmp/RtmpBWJxva/file105899c2ca00b/__MACOSX/castle/._2022_382019.json': No space left on device
Calls: read_fude -> <Anonymous>
Execution halted
Maintainer: ‘Jiangtao Gou <gouRpackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiangtao",
                      family = "Gou",
                      role = c("aut", "cre"),
                      email = "gourpackage@gmail.com"),
               person(given = "Fengqing",
                      family = "Zhang",
                      role = "aut",
                      comment = "Zoe"))
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xinran",
                      family = "Li",
                      role = "aut"),
               person(given = c("Paul", "R."),
                      family = "Rosenbaum",
                      role = c("aut", "cre"),
                      email = "rosenbaum@wharton.upenn.edu"))
as necessary.
Package required but not available: ‘afex’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Paula Weidemueller [aut, cre, cph] (<https://orcid.org/0000-0003-3867-3131>, @PaulaH_W), Constantin Ahlmann-Eltze [aut] (<https://orcid.org/0000-0002-3762-068X>, @const_ae)’
  Authors@R: ‘Paula Weidemueller [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-3867-3131>, Twitter: @PaulaH_W), Constantin Ahlmann-Eltze [aut] (ORCID: <https://orcid.org/0000-0002-3762-068X>, Twitter: @const_ae)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘find_connected_components.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘fullrankmat-comparison.Rmd’ using rmarkdown

Quitting from fullrankmat-comparison.Rmd:54-56 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'caret'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fullrankmat-comparison.Rmd' failed with diagnostics:
there is no package called 'caret'
--- failed re-building ‘fullrankmat-comparison.Rmd’

--- re-building ‘fullrankmat-example.Rmd’ using rmarkdown
--- finished re-building ‘fullrankmat-example.Rmd’

SUMMARY: processing the following file failed:
  ‘fullrankmat-comparison.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'fda', 'fda.usc', 'roahd', 'fdapace', 'rofanova'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘adapted.fun.chisq.test.Rmd’ using rmarkdown

Quitting from adapted.fun.chisq.test.Rmd:126-133 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `Untable()`:
! could not find function "Untable"
---
Backtrace:
    ▆
 1. └─global compare.methods(func)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'adapted.fun.chisq.test.Rmd' failed with diagnostics:
could not find function "Untable"
--- failed re-building ‘adapted.fun.chisq.test.Rmd’

--- re-building ‘exact.fun.test.Rmd’ using rmarkdown
--- finished re-building ‘exact.fun.test.Rmd’

--- re-building ‘fun.chisq.test.Rmd’ using rmarkdown
--- finished re-building ‘fun.chisq.test.Rmd’

--- re-building ‘patterns.Rmd’ using rmarkdown
--- finished re-building ‘patterns.Rmd’

SUMMARY: processing the following file failed:
  ‘adapted.fun.chisq.test.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'caret', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Danenberg <pcd@roxygen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Danenberg",
                    role = c("aut", "cre"),
                    email = "pcd@roxygen.org")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Bouveyron",
                    role = c("aut", "cre"),
                    email = "charles.bouveyron@gmail.com")
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MBESS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/funkyheatmap.Rcheck/00install.out’ for details.
Maintainer: ‘John J. Dziak <dziakj1@gmail.com>’

The Description field contains
  Piper & Li (2021) <arXiv:2112.03960>. The model is similar to that of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘refund’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/funneljoin.Rcheck/00install.out’ for details.
Maintainer: ‘Matthew Kumar <mattkumar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "mattkumar@gmail.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: www.ncbi.nlm.nih.gov/pubmed/15568194
    From: inst/doc/introduction.html
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
problems found in ‘sort_by.Rd’, ‘unique_by.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9kg9Kc/ltx107c151d214729/iterate.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘mlVAR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘fuseMLR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cobra
> ### Title: Cobra Meta Learner
> ### Aliases: cobra
> 
> ### ** Examples
> 
> # Example usage
> set.seed(123)
> x_train <- data.frame(a = runif(10L), b = runif(10L))
> y_train <- sample(0L:1L, size = 10L, replace = TRUE)
> 
> # Train the model with epsilon optimization
> cobra_model <- cobra(x = x_train, y = y_train, tune = "epsilon", k_folds = 2)
Tuning 'epsilon' via cross-validation with 2 folds.
> 
> # Make predictions on new data
> set.seed(156)
> x_new <- data.frame(a = runif(5L), b = runif(5L))
> prediction <- predict(object = cobra_model, data = x_new)
Error in loadNamespace(x) : there is no package called ‘caret’
Calls: predict ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘fuseMLR.Rmd’ using rmarkdown

Quitting from fuseMLR.Rmd:184-188 [lrner_train]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'caret'
---
Backtrace:
     ▆
  1. ├─fuseMLR::fusemlr(training = training, use_var_sel = TRUE)
  2. │ └─training$train(...)
  3. │   └─self$createMetaTrainData(...)
  4. │     ├─base::do.call(eval(parse(text = resampling_method)), resampling_arg)
  5. │     └─base::eval(parse(text = resampling_method))
  6. │       └─base::eval(parse(text = resampling_method))
  7. └─base::loadNamespace(x)
  8.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
  9.     └─base (local) withOneRestart(expr, restarts[[1L]])
 10.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fuseMLR.Rmd' failed with diagnostics:
there is no package called 'caret'
--- failed re-building ‘fuseMLR.Rmd’

SUMMARY: processing the following file failed:
  ‘fuseMLR.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Frank Dondelinger <fdondelinger.work@gmail.com>’

The Description field contains
  in detail in Dondelinger and Mukherjee (2017) <arXiv:1611.00953>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yuan Zhong <aqua.zhong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin",
                      family = "Gao",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Zhong",
                      role = c("aut", "cre"),
                      email = "aqua.zhong@gmail.com"),
               person(given = c("Raymond", "J."),
                      family = "Carroll",
                      role = "aut"))
as necessary.

The Description field contains
  Raymond J. Carroll (2017) <arXiv:1610.00667v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Brian Lee Yung Rowe <r@zatonovo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brian", "Lee", "Yung"),
                    family = "Rowe",
                    role = c("aut", "cre"),
                    email = "r@zatonovo.com")
as necessary.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Reading Rd files failed with message:
  cannot open the connection
Warning in dir.create(filedir) :
  cannot create dir '/tmp/Rtmp6Pv6pi/file11146b7dc2a154', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6Pv6pi/file11146b7dc2a154/check.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'miceRanger', 'VIM', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alina Petukhova <petukhova.alina@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alina",
                    family = "Petukhova",
                    role = c("aut", "cre"),
                    email = "petukhova.alina@gmail.com")
as necessary.
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Marek Gagolewski <marek@gagolewski.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                             ^
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                                                     ^
checkRd: (-1) genmf.Rd:26: Lost braces; missing escapes or markup?
    26 | \item 'gbellmf' is c(\code{a, b, c}), where \code{a} denotes the width, \code{b} is usually positive and {c} locates the center of the curve.
       |                                                                                                          ^
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Asun Lubiano <lubiano@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Asun",
                      family = "Lubiano",
                      role = c("aut", "cre"),
                      email = "lubiano@uniovi.es"),
               person(given = c("Sara", "de", "la", "Rosa"),
                      family = "de Saa",
                      role = "aut",
                      email = "rosasara@uniovi.es"))
as necessary.
Fatal error: cannot create 'R_TempDir'
sh: 1: cannot create /tmp/RtmpJg9hQ2/xshell1123553ef572c5: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpJg9hQ2/xshell1123553ef572c5': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘confint.fxregimes.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxlm.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxmonitor.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxregimes.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxreturns.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxtools.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘gap’

Packages suggested but not available for checking:
  'biomaRt', 'EnsDb.Hsapiens.v75', 'ensembldb', 'HardyWeinberg',
  'SNPassoc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Farimah Houshmand Nanehkaran <hoshmandcomputer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Farimah", "Houshmand"),
                      family = "Nanehkaran",
                      role = c("aut", "cre"),
                      email = "hoshmandcomputer@gmail.com"),
               person(given = c("Seyed", "Mohammad", "Reza"),
                      family = "Lajevardi",
                      role = "aut",
                      email = "R.Lajevardi@iaukashan.ac.ir"),
               person(given = c("Mahmoud", "Mahlouji"),
                      family = "Bidgholi",
                      role = "aut",
                      email = "m.mahlouji@iaukashan.ac.ir"))
as necessary.
Maintainer: ‘Magali Champion <magali.champion@parisdescartes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Magali",
                      family = "Champion",
                      role = c("aut", "cre"),
                      email = "magali.champion@parisdescartes.fr"),
               person(given = "Victor",
                      family = "Picheny",
                      role = "aut"),
               person(given = "Matthieu",
                      family = "Vignes",
                      role = "aut"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘quota.Rd’, ‘run_tmb.Rd’, ‘step.Rd’, ‘stock.Rd’, ‘stock_age.Rd’, ‘stock_areas.Rd’, ‘stock_tag.Rd’
Maintainer: ‘Bin Wang <eatingbeen@hotmail.com>’

The Description field contains
  and Jianhua Guo (2022) <arXiv:1911.00658>.  This paper provides the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yao Lin <zaiyaolin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tzu-Yao",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yao",
                      family = "Lin",
                      role = "cre",
                      email = "zaiyaolin@gmail.com"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/galaxias.Rcheck/00install.out’ for details.
Package required but not available: ‘rtracklayer’

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mehmet", "Hakan"),
                    family = "Satman",
                    role = c("aut", "cre"),
                    email = "mhsatman@istanbul.edu.tr")
as necessary.
Maintainer: ‘Simon Wood <simon.wood@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Wood",
                    role = c("aut", "cre"),
                    email = "simon.wood@r-project.org")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Matthews <txm676@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘AirbagEffectiveness.Rmd’ using rmarkdown
--- finished re-building ‘AirbagEffectiveness.Rmd’

--- re-building ‘airAccs.Rmd’ using rmarkdown
--- finished re-building ‘airAccs.Rmd’

--- re-building ‘resampling.Rmd’ using rmarkdown

Quitting from resampling.Rmd:125-142 [boot-regcoefs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'car'
---
Backtrace:
    ▆
 1. └─base::library(car, quietly = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'resampling.Rmd' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘resampling.Rmd’

SUMMARY: processing the following file failed:
  ‘resampling.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Koen W. De Bock <kdebock@audencia.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Koen", "W."),
                      family = "De Bock",
                      role = c("aut", "cre"),
                      email = "kdebock@audencia.com"),
               person(given = "Kristof",
                      family = "Coussement",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Sebastian Cano-Berlanga <cano.berlanga@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Cano-Berlanga",
                    role = c("aut", "cre"),
                    email = "cano.berlanga@gmail.com")
as necessary.
Maintainer: ‘Abu Hossain <a.hossain@londonmet.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abu",
                      family = "Hossain",
                      role = c("aut", "cre"),
                      email = "a.hossain@londonmet.ac.uk"),
               person(given = "Robert",
                      family = "Rigby",
                      role = "aut"),
               person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre"),
                      email = "d.stasinopoulos@gre.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut"),
               person(given = "Nicoleta",
                      family = "Mortan",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Seipp",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre"),
                      email = "d.stasinopoulos@gre.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut",
                      email = "r.rigby@gre.ac.uk"))
as necessary.
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre"),
                      email = "d.stasinopoulos@gre.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut",
                      email = "r.rigby@gre.ac.uk"))
as necessary.
Maintainer: ‘Martha Corrales <martha.corrales@usa.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martha",
                      family = "Corrales",
                      role = c("aut", "cre"),
                      email = "martha.corrales@usa.edu.co"),
               person(given = "Edilberto",
                      family = "Cepeda-Cuervo",
                      role = "aut"),
               person(given = c("with", "the", "colaboration", "of", "Margarita"),
                      family = "Marin",
                      role = "aut"),
               person(given = c("Maria", "Fernanda"),
                      family = "Zarate",
                      role = "aut"),
               person(given = "Ricardo",
                      family = "Duplat",
                      role = "aut"),
               person(given = c("Campo", "Elias"),
                      family = "Pardo.",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Wangjian",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
‘gs+qpdf’ made some significant size reductions:
     compacted ‘manual.pdf’ from 739Kb to 369Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files,
  or build the source package with --compact-vignettes=both
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp3W0IsX/file115aa163fc5d26': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp3W0IsX/file115aa163fc5d26': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Zhaoyuan Fang <fangzhaoyuan@sibs.ac.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoyuan",
                      family = "Fang",
                      role = c("aut", "cre"),
                      email = "fangzhaoyuan@sibs.ac.cn"),
               person(given = "Weidong",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hongbin",
                      family = "Ji",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhaoyuan Fang <fangzhaoyuan@sibs.ac.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoyuan",
                      family = "Fang",
                      role = c("aut", "cre"),
                      email = "fangzhaoyuan@sibs.ac.cn"),
               person(given = "Weidong",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hongbin",
                      family = "Ji",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dataverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘F.J. Martinez-de-Pison <fjmartin@unirioja.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "F.J.",
                    family = "Martinez-de-Pison",
                    role = c("aut", "cre"),
                    email = "fjmartin@unirioja.es")
as necessary.
Package required but not available: ‘plotly’

Packages suggested but not available for checking:
  'DiagrammeR', 'meta', 'rms', 'valr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xinyu Song <song.xinyu@mail.shufe.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xinyu",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "song.xinyu@mail.shufe.edu.cn")
as necessary.
Maintainer: ‘Sanjeev Sariya <sanjeevsariya@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Qingsheng Huang <huangqqss@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qingsheng",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "huangqqss@126.com")
as necessary.
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                      ^
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                                      ^
checkRd: (-1) read.ctable.Rd:29: Lost braces; missing escapes or markup?
    29 | output array, {row,col}.names are not necessary \code{dimnames[[1]]} and
       |               ^
Author field differs from that derived from Authors@R
  Author:    ‘Danny Tholen [aut, cre] (<https://orcid.org/0000-0002-9517-0939>, University of Natural Resources and Life Sciences, Vienna)’
  Authors@R: ‘Danny Tholen [aut, cre] (ORCID: <https://orcid.org/0000-0002-9517-0939>, affiliation: University of Natural Resources and Life Sciences, Vienna)’
Maintainer: ‘Fabien Navarro <fabien.navarro@math.cnrs.fr>’

The Description field contains
  (2019) <arxiv:1906.01882>.  The package also provides an interface to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘sparr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ridigbio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Running examples in ‘gauseR-Ex.R’ failed
The error occurred in:

Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpyxnVHm/Rf115b5f1da4e79': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Novomestky",
                    role = c("aut", "cre"),
                    email = "fnovomes@poly.edu")
as necessary.
Maintainer: ‘Vanesa Jorda <jordav@unican.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vanesa",
                      family = "Jorda",
                      role = c("aut", "cre"),
                      email = "jordav@unican.es"),
               person(given = c("Jose", "Maria"),
                      family = "Sarabia",
                      role = "aut",
                      email = "jose.sarabia@unican.es"),
               person(given = "Markus",
                      family = "Jäntti.",
                      role = "aut",
                      email = "markus.jantti@sofi.su.se"))
as necessary.

The Description field contains
  <arXiv:1808.09831> for a detailed description of the estimation
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'tidyverse', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/gbifdb
which should likely be
  https://github.com/ropensci/gbifdb/issues
instead.
Maintainer: ‘Ryan Sun <ryansun.work@gmail.com>’

The Description field contains
  <arXiv:1710.02469> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'ggmap', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Waley W. J. Liang <wliang10@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Waley", "W.", "J."),
                    family = "Liang",
                    role = c("aut", "cre"),
                    email = "wliang10@gmail.com")
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuwen",
                      family = "Gu",
                      role = "aut",
                      email = "yuwen.gu@uconn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Maintainer: ‘Olivier Blarquez <blarquez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Global", "Paleofire", "Working"),
                      family = "Group",
                      role = "aut",
                      email = "paleofire@univ-fcomte.fr"),
               person(given = "Olivier",
                      family = "Blarquez",
                      role = "cre",
                      email = "blarquez@gmail.com"))
as necessary.
Maintainer: ‘Hanjie Shen <shenhanjie0418@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanjie",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "shenhanjie0418@gmail.com"),
               person(given = "Ruben",
                      family = "Carmona",
                      role = "aut",
                      email = "ruben.carmona13@gmail.com"),
               person(given = "Loren",
                      family = "Mell",
                      role = "aut",
                      email = "lmell@ucsd.edu"))
as necessary.
Packages required but not available: 'meboot', 'ggpubr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zifei Han <hanzifei1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zifei",
                    family = "Han",
                    role = c("aut", "cre"),
                    email = "hanzifei1@gmail.com")
as necessary.
Maintainer: ‘Gherardo Varando <gherardo.varando@gmail.com>’

The Description field contains
  minimization problem.  Varando G, Hansen NR (2020) <arXiv:2005.10483>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) listInverseBlocks.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                           ^
checkRd: (-1) listInverseBlocks.Rd:17: Lost braces; missing escapes or markup?
    17 | List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                    ^
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘cparcoord.Rd’, ‘diameter.Rd’, ‘dmat.color.Rd’, ‘hclust.Rd’, ‘order.Rd’, ‘order.clusters.Rd’, ‘ozone.Rd’, ‘partition.crit.Rd’, ‘pclen.Rd’, ‘plotcolors.Rd’, ‘utilities.Rd’, ‘wine.Rd’
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugo",
                    family = "Gasca-Aragon",
                    role = c("aut", "cre"),
                    email = "hugo_gasca_aragon@hotmail.com")
as necessary.
checkRd: (-1) gconsensus.Rd:48-54: Lost braces
    48 | {\code{display.signif.digits} an integer representing the number of significant digits to be obtained in the adaptative approach of the Monte Carlo simulation,
       | ^
Maintainer: ‘Mike Blazanin <mikeblazanin@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: vignette(%2206_analyze%22).pdf
    From: inst/doc/gc05_process.pdf
  URI: vignette(%2207_noise%22).pdf
    From: inst/doc/gc05_process.pdf
  URI: vignette(%2205_process%22).pdf
    From: inst/doc/gc06_analyze.pdf
Maintainer: ‘Kevin Jakob <Kevin.Jakob.Research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Jakob",
                    role = c("aut", "cre"),
                    email = "kevin.jakob.research@gmail.com")
as necessary.
checkRd: (-1) GCTF.Rd:56: Lost braces; missing escapes or markup?
    56 |   U : A matrix which has N-rows and J-columns (J < {N, M}).
       |                                                    ^
checkRd: (-1) GCTF.Rd:57: Lost braces; missing escapes or markup?
    57 |   V : A matrix which has M-rows and J-columns (J < {N, M}).
       |                                                    ^
checkRd: (-1) GCTF.Rd:58: Lost braces; missing escapes or markup?
    58 |   J : The number of dimension (J < {N, M}).
       |                                    ^
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Antony Unwin<unwin@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antony",
                    family = "Unwin",
                    role = c("aut", "cre"),
                    email = "unwin@math.uni-augsburg.de")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpys3qQn/file14233934813ff8/vsi_get_actual_url.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmLqNKz/ltx14fc9a34bbe97e/buildVRT.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Joshua O'Brien <joshmobrien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "O'Brien",
                    role = c("aut", "cre"),
                    email = "joshmobrien@gmail.com")
as necessary.
checkRd: (-1) nearblack.Rd:30: Lost braces
    30 | code{infile=}, indicating that the input file should be
       |     ^
Maintainer: ‘David Brahm <brahm@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Brahm",
                    role = c("aut", "cre"),
                    email = "brahm@alum.mit.edu")
as necessary.
Found the following calls to attach():
File ‘g.data/R/g.data.attach.R’:
  attach(NULL, pos, basename(dir))
See section ‘Good practice’ in ‘?attach’.
Package required but not available: ‘FactoMineR’

Packages suggested but not available for checking: 'esquisse', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpxL7SKQ/file12333f3ae3731': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpxL7SKQ/file12333f3ae3731': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Ezequiel Smucler <ezequiels.90@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Peña",
                      role = "aut",
                      email = "daniel.pena@uc3m.es"),
               person(given = "Ezequiel",
                      family = "Smucler",
                      role = c("aut", "cre"),
                      email = "ezequiels.90@gmail.com"),
               person(given = "Victor",
                      family = "Yohai",
                      role = "aut",
                      email = "vyohai@dm.uba.ar"))
as necessary.
checkRd: (-1) GDSARM.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDSARM.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) GDS_givencols.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDS_givencols.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) dantzig.delta.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dantzigS.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dataCompoundExt.Rd:6: Lost braces
     6 | \title{Compound Extraction experiment of Dopico-Garc{\' i}a et al. (2007)}
       |                                                     ^
checkRd: (-1) dataCompoundExt.Rd:35: Lost braces
    35 | An analytical experiment conducted by Dopico-Garc{\' i}a et al. (2007) to
       |                                                  ^
checkRd: (-1) dataCompoundExt.Rd:22: Lost braces
    22 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
Maintainer: ‘Partha Sarathi Bishnu <psbishnu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Partha", "Sarathi"),
                    family = "Bishnu",
                    role = c("aut", "cre"),
                    email = "psbishnu@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gdverse.Rcheck/00install.out’ for details.
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Packages required but not available: 'red', 'biomod2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emilio L. Sáenz Guillén <Emilio.Saenz-Guillen@citystgeorges.ac.uk>’

Found the following (possibly) invalid file URIs:
  URI: 1810.11363
    From: inst/doc/jss_article.pdf
  URI: 2302.13822
    From: inst/doc/jss_article.pdf
Maintainer: ‘Junghi Kim <junghikim0@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junghi",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "junghikim0@gmail.com"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Packages required but not available: 'geepack', 'MESS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgee’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lee McDaniel <lmcda4@lsuhsc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Maintainer: ‘Zheng Li <zheng.li@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Wang",
                      role = "aut",
                      email = "mwang@phs.psu.edu"),
               person(given = "Zheng",
                      family = "Li",
                      role = "cre",
                      email = "zheng.li@outlook.com"))
as necessary.
checkRd: (-1) dental.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:18: Lost braces in \itemize; meant \describe ?
Running examples in ‘geex-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: nobs,geex-method
> ### Title: Extract the number observations
> ### Aliases: nobs,geex-method nobs,geex,geex-method
> ###   nobs,geex_summary-method nobs,geex_summary,geex_summary-method
> 
> ### ** Examples
> 
> library(geepack)
Error in library(geepack) : there is no package called ‘geepack’
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6VotTv/ltx14fe933c2b3c65/compute_sum_of_list.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Found the following significant warnings:
  Warning: Character length of actual argument longer than of dummy argument ‘side’ (5/1) at (1) [-Wcharacter-truncation]
  Warning: Character length of actual argument longer than of dummy argument ‘trans’ (19/1) at (1) [-Wcharacter-truncation]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geigen.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-16 (Debian 16.1.0-1) 16.1.0’
* used Fortran compiler: ‘GNU Fortran (Debian 16.1.0-1) 16.1.0’
Maintainer: ‘Luke Harmon <lukeh@uidaho.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Harmon",
                      role = c("aut", "cre"),
                      email = "lukeh@uidaho.edu"),
               person(given = "Matthew",
                      family = "Pennell",
                      role = "aut"),
               person(given = "Chad",
                      family = "Brock",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Brown",
                      role = "aut"),
               person(given = "Wendell",
                      family = "Challenger",
                      role = "aut"),
               person(given = "Jon",
                      family = "Eastman",
                      role = "aut"),
               person(given = "Rich",
                      family = "FitzJohn",
                      role = "aut"),
               person(given = "Rich",
                      family = "Glor",
                      role = "aut"),
               person(given = "Gene",
                      family = "Hunt",
                      role = "aut"),
               person(given = "Liam",
                      family = "Revell",
                      role = "aut"),
               person(given = "Graham",
                      family = "Slater",
                      role = "aut"),
               person(given = "Josef",
                      family = "Uyeda",
                      role = "aut"),
               person(given = "Jason",
                      family = "Weir",
                      role = "aut"),
               person(given = "CRAN",
                      family = "team",
                      role = "aut",
                      comment = "corrections in 2022"))
as necessary.
install log ‘’ does not exist
Maintainer: ‘Xiaoyan Wang <xywang@hnu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "xywang@hnu.edu.cn"),
               person(given = "Hongduo",
                      family = "Liu",
                      role = "aut"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Friendly <friendly@yorku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georges",
                      family = "Monette",
                      role = "aut"),
               person(given = "Michael",
                      family = "Friendly",
                      role = c("aut", "cre"),
                      email = "friendly@yorku.ca"))
as necessary.
Maintainer: ‘Artem Sokolov <artem.sokolov@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Artem",
                    family = "Sokolov",
                    role = c("aut", "cre"),
                    email = "artem.sokolov@gmail.com")
as necessary.
checkRd: (-1) gelnet.logreg.obj.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{y}{n-by-1 binary response vector sampled from {0,1}}
       |                                                     ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘basics.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp6jBBht/Rf12327a2f6caaa2': No space left on device

Quitting from basics.Rmd:78-81 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from basics.Rmd:78-81 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basics.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘basics.Rmd’

SUMMARY: processing the following file failed:
  ‘basics.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘compare-with-GEMMAv096.Rmd’ using rmarkdown
Warning in file(con, "w") :
  cannot open file '/tmp/RtmpRrhDsc/rmarkdown-str139ae879434502.html': No space left on device
Error: processing vignette 'compare-with-GEMMAv096.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘compare-with-GEMMAv096.Rmd’

SUMMARY: processing the following file failed:
  ‘compare-with-GEMMAv096.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'mixlm', 'HDANOVA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luisa Salazar Vizcaya <luisapaola.salazarvizcaya@insel.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luisa", "Salazar"),
                      family = "Vizcaya",
                      role = c("aut", "cre"),
                      email = "luisapaola.salazarvizcaya@insel.ch"),
               person(given = "Nello",
                      family = "Blaser",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Gsponer",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Seongho Kim <biostatistician.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seongho",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "biostatistician.kim@gmail.com")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpnrr2oR/file15e8591d396923/create_input_landscape.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Michel Ballings <Michel.Ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Egon",
                      family = "Willighagen",
                      role = "aut"),
               person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"))
as necessary.
Packages required but not available:
  'ggnetwork', 'ggraph', 'ggtree', 'ShortRead'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Horst Lewitschnig <Horst.Lewitschnig@infineon.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Horst",
                      family = "Lewitschnig",
                      role = c("aut", "cre"),
                      email = "horst.lewitschnig@infineon.com"),
               person(given = "David",
                      family = "Lenzi",
                      role = "aut"))
as necessary.
Packages required but not available: 'BSgenome', 'rtracklayer'

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg38’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Helgem de Souza Ribeiro Martins <helgem.souza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Helgem", "de", "Souza", "Ribeiro"),
                      family = "Martins",
                      role = c("aut", "cre"),
                      email = "helgem.souza@gmail.com"),
               person(given = c("Anderson", "Ribeiro"),
                      family = "Duarte",
                      role = "aut"))
as necessary.
Maintainer: ‘Francis Huang <flh3@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francis",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "flh3@hotmail.com")
as necessary.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(gendercoder)
  > 
  > test_file <- file.path("testthat", "test-recode_gender.R")
  > if (!file.exists(test_file)) {
  +   test_file <- file.path("tests", test_file)
  + }
  > source(test_file)
  Error in loadNamespace(x) : there is no package called 'haven'
  Calls: source ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Maintainer: ‘Lincoln Mullen <lincoln@lincolnmullen.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Shaiful Anuar Abu Bakar <saab@um.edu.my>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Shaiful", "Anuar", "Abu"),
                    family = "Bakar",
                    role = c("aut", "cre"),
                    email = "saab@um.edu.my")
as necessary.
Package required but not available: ‘annotate’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GeneF-internal.Rd:40: Lost braces; missing escapes or markup?
    40 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.pvalue.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
Packages required but not available: 'clusterProfiler', 'ggraph'

Packages suggested but not available for checking:
  'AnnotationDbi', 'GOSemSim', 'rio', 'rrvgo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Seurat’

Package suggested but not available for checking: ‘msigdbr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Venkatraman E. Seshan <seshanv@mskcc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Venkatraman", "E."),
                    family = "Seshan",
                    role = c("aut", "cre"),
                    email = "seshanv@mskcc.org")
as necessary.
Maintainer: ‘H. D. Vinod <vinod@fordham.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Prof.", "H.", "D."),
                      family = "Vinod",
                      role = "aut"),
               person(given = "Fordham",
                      family = "University",
                      role = "aut"),
               person(family = "NY.",
                      role = "aut"),
               person(given = c("H.", "D."),
                      family = "Vinod",
                      role = "cre",
                      email = "vinod@fordham.edu"))
as necessary.
Packages required but not available: 'np', 'meboot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aurelien Nicosia <nicosia.aurelien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aurelien",
                      family = "Nicosia",
                      role = c("aut", "cre"),
                      email = "nicosia.aurelien@gmail.com"),
               person(given = "Simon",
                      family = "Baillargeon-Ladouceur",
                      role = "aut"))
as necessary.
Maintainer: ‘Max Welz <welz@ese.eur.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  and Fernández-Val (2020) <arXiv:1712.04802>. This package's workhorse
  <arXiv:1712.04802> for a suite of user-specified machine learners. All
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) cpm.Rd:70: Lost braces; missing escapes or markup?
    70 | covariates included in \code{formula_l} or {formula_s} (required).}
       |                                            ^
Package required but not available: ‘missMDA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gregory Warnes <greg@warnes.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Warnes",
                      role = c("aut", "cre"),
                      email = "greg@warnes.net"),
               person(given = c("with", "contributions", "from", "Gregor"),
                      family = "Gorjanc",
                      role = "aut"),
               person(given = "Friedrich",
                      family = "Leisch",
                      role = "aut"),
               person(given = "Michael",
                      family = "Man.",
                      role = "aut"))
as necessary.
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:86-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:48-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:59-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:78-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:93-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Ryan C. Graebner <ryan.graebner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Graebner",
                      role = c("aut", "cre"),
                      email = "ryan.graebner@gmail.com"),
               person(given = "Alfonso",
                      family = "Cuesta-Marcos",
                      role = "aut"))
as necessary.
Packages required but not available: 'sfnetworks', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘geneviewer-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpnqqjLE/file14247cb494a16/GC_annotation.R': No space left on device
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GenHMM1d.Rcheck/00install.out’ for details.
Package required but not available: ‘sunburstR’

Packages suggested but not available for checking: 'gtsummary', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yaoyong Li<liyaoyong85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yaoyong",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "liyaoyong85@gmail.com")
as necessary.
Maintainer: ‘Daniel Fischer <daniel.fischer@luke.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Fischer",
                    role = c("aut", "cre"),
                    email = "daniel.fischer@luke.fi")
as necessary.
Maintainer: ‘Lionel Guy <lionel.guy@imbim.uu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lionel",
                    family = "Guy",
                    role = c("aut", "cre"),
                    email = "lionel.guy@imbim.uu.se")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) barto.Rd:15-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:19-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:23-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:19-20: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘cSEM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shiqing Yu <syu.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shiqing",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "syu.phd@gmail.com"),
               person(given = "Lina",
                      family = "Lin",
                      role = "aut"),
               person(given = "Wally",
                      family = "Gilks",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpv7xhvg/file14244563d333c4/make_domain.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘John P Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "P"),
                    family = "Nolan",
                    role = c("aut", "cre"),
                    email = "jpnolan@american.edu")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gensphere.Rcheck/00install.out’ for details.
Maintainer: ‘Jixiang Wu <jixiang.wu@sdstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jixiang",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "jixiang.wu@sdstate.edu")
as necessary.
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The BugReports field in DESCRIPTION has
  https://github.com/GjjvdBurg/RGenSVM
which should likely be
  https://github.com/GjjvdBurg/RGenSVM/issues
instead.
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                ^
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                            ^
Maintainer: ‘Carlos Biagolini-Jr.<c.biagolini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Biagolini-Jr.",
                    role = c("aut", "cre"),
                    email = "c.biagolini@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy M. Beissinger <timbeissinger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Timothy", "M."),
                    family = "Beissinger",
                    role = c("aut", "cre"),
                    email = "timbeissinger@gmail.com")
as necessary.
Packages required but not available: 'fmesher', 'SUMMER'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘duckspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'crsuggest', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tmap', 'reldist', 'plotly'

Packages suggested but not available for checking: 'car', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘duckspatial’

Packages suggested but not available for checking: 'dbplyr', 'geobr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_geometry.Rd’ ‘add_level.Rd’ ‘common.R’
    ‘complete_point_geometry.Rd’ ‘complete_relation_by_geography.Rd’
    ‘coordinates_to_geometry.Rd’ ‘explotation.R’ ‘geodimension.R’
    ‘geolevel.R’ ‘get_empty_geometry_instances.Rd’
    ‘get_higher_level_names.Rd’ ‘get_level_data.Rd’
    ‘get_level_data_geo.Rd’ ‘get_level_geometries.Rd’
    ‘get_level_layer.Rd’ ‘get_level_names.Rd’
    ‘get_unrelated_instances.Rd’ ‘relate_levels.Rd’ ‘relations.R’
    ‘select_levels.Rd’ ‘set_level_data.Rd’ ‘transform_crs.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpVq9kh7/file14e974fdabc38': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpVq9kh7/file14e974fdabc38': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Annie C. Smith <annie.smith@dnr.wa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Annie", "C."),
                      family = "Smith",
                      role = c("aut", "cre"),
                      email = "annie.smith@dnr.wa.gov"),
               person(given = "Phoebe",
                      family = "Zarnetske",
                      role = "aut"),
               person(given = "Kyla",
                      family = "Dahlin",
                      role = "aut"),
               person(given = "Adam",
                      family = "Wilson",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Latimer",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpvmcMNK/file1582dcc359d54/std.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Ha-Young Shin <hayoung.shin@gmail.com>’

The Description field contains
  Oh, H.-S. (2020) <arXiv:2007.04518>. Also see Fletcher, P. T. (2013)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) calvaria.Rd:8: Lost braces; missing escapes or markup?
     8 | A named list containing \code{x} {a vector containing the ages}
       |                                  ^
checkRd: (-1) calvaria.Rd:9: Lost braces; missing escapes or markup?
     9 |   \code{y} {a matrix where each column is a preshape.} The 23rd, 101st,
       |            ^
Maintainer: ‘Anja Kleebaum <kleebaum@informatik.uni-heidelberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anja",
                    family = "Kleebaum",
                    role = c("aut", "cre"),
                    email = "kleebaum@informatik.uni-heidelberg.de")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘geofi_datasets.Rmd’ using rmarkdown
--- finished re-building ‘geofi_datasets.Rmd’

--- re-building ‘geofi_geocoding.Rmd’ using rmarkdown
--- finished re-building ‘geofi_geocoding.Rmd’

--- re-building ‘geofi_joining_attribute_data.Rmd’ using rmarkdown
--- finished re-building ‘geofi_joining_attribute_data.Rmd’

--- re-building ‘geofi_making_maps.Rmd’ using rmarkdown
--- finished re-building ‘geofi_making_maps.Rmd’

--- re-building ‘geofi_nls_ogc.Rmd’ using rmarkdown
--- finished re-building ‘geofi_nls_ogc.Rmd’

--- re-building ‘geofi_spatial_analysis.Rmd’ using rmarkdown

Quitting from geofi_spatial_analysis.Rmd:71-87 [crss]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/RtmpyKLZqG/file156dfd47d525e2'
---
Backtrace:
    ▆
 1. ├─base::withVisible(knit_print(x, ...))
 2. ├─knitr::knit_print(x, ...)
 3. └─knitr:::knit_print.default(x, ...)
 4.   └─knitr::normal_print(x)
 5.     ├─base::print(x)
 6.     └─patchwork:::print.patchwork(x)
 7.       └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'geofi_spatial_analysis.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpyKLZqG/file156dfd47d525e2'
--- failed re-building ‘geofi_spatial_analysis.Rmd’

--- re-building ‘geofi_statfi_ogc.Rmd’ using rmarkdown
--- finished re-building ‘geofi_statfi_ogc.Rmd’

SUMMARY: processing the following file failed:
  ‘geofi_spatial_analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'rdflib', 'ows4R'

Packages suggested but not available for checking:
  'datapack', 'dataone', 'atom4R', 'dataverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rolap’

Packages suggested but not available for checking: 'dbplyr', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'baf', 'dataverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karsten Donnay <kdonnay@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karsten",
                      family = "Donnay",
                      role = c("aut", "cre"),
                      email = "kdonnay@gmx.net"),
               person(given = c("Andrew", "M."),
                      family = "Linke",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp23afxK/file1bf8197e3afd8e/ISOSpatialTemporalExtent.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .........................Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp2BbeHn/file1d8f4389f0d39': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp2BbeHn/file1d8f4389f0d39': No such file or directory
Error in file(con, "r") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘geomc-vs.Rmd’ using rmarkdown
--- finished re-building ‘geomc-vs.Rmd’

Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmptHvtqq/file14b73e225210b6.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘geomtextpath-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpNClEso/file14bcd779187c84/coord_curvedpolar.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘aesthetics.Rmd’ using rmarkdown
--- finished re-building ‘aesthetics.Rmd’

--- re-building ‘curved_polar.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpOM23By/Rf155cca22d6f6bd': No space left on device

Quitting from curved_polar.Rmd:59-61 [weather_plot_coordcurvedpolar]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from curved_polar.Rmd:59-61 [weather_plot_coordcurvedpolar]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'curved_polar.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘curved_polar.Rmd’

--- re-building ‘geomtextpath.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpPEg0tM/Rf15640464c32a52': No space left on device

Quitting from geomtextpath.Rmd:132-135 [grid]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from geomtextpath.Rmd:132-135 [grid]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'geomtextpath.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘geomtextpath.Rmd’

SUMMARY: processing the following files failed:
  ‘curved_polar.Rmd’ ‘geomtextpath.Rmd’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_dimension.Rd’ ‘add_facts.Rd’ ‘define_geoattribute.Rd’
    ‘dimensional_query_run_geoquery.R’ ‘filter_dimension.Rd’
    ‘geomultistar_define_geoattribute.R’ ‘get_empty_geoinstances.Rd’
    ‘multistar_as_flat_table.Rd’ ‘relate_dimension.Rd’ ‘run_geoquery.Rd’
    ‘run_query.Rd’ ‘save_as_geopackage.Rd’ ‘select_dimension.Rd’
    ‘select_fact.Rd’
Maintainer: ‘Barry Rowlingson <b.rowlingson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Barry",
                    family = "Rowlingson",
                    role = c("aut", "cre"),
                    email = "b.rowlingson@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geoprofiler.Rcheck/00install.out’ for details.
cannot open the connection
cannot open the connection
problems found in ‘lines.variomodel.variofit.Rd’, ‘loglik.GRF.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpE3398W/file14f5f52dd224cb': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpE3398W/file14f5f52dd224cb': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Mark A. Bell <mark.bell521@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mark", "A."),
                      family = "Bell.",
                      role = "aut",
                      email = "mark.bell521@gmail.com"),
               person(given = c("Mark", "A."),
                      family = "Bell",
                      role = "cre",
                      email = "mark.bell521@gmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘geoscale-package.Rd’:
    \keyword{time-series,plot}
  File ‘geoscaleBox.Rd’:
    \keyword{time-series,plot}
  File ‘geoscalePlot.Rd’:
    \keyword{time-series,plot}
Packages required but not available: 'sparklyr', 'dbplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

Package suggested but not available for checking: ‘nhdplusTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘StatMatch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpHQPAHx/file15f3ed3cab9ea6/glgm.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Antoine Lucas <antoinelucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Lucas",
                    role = c("aut", "cre"),
                    email = "antoinelucas@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following calls to data() loading into the global environment:
File ‘geotools/R/zzz.R’:
  data(fr_geo_rad)
See section ‘Good practice’ in ‘?data’.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘geoTS-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/Rtmpf39a7U/file15b1fc65a3746c', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/Rtmpf39a7U/file15b1fc65a3746c/haRmonics.R': No such file or directory
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Michael Robbins <mrobbins@rand.org>’

The Description field contains
  Robbins (2021) <arXiv:2008.02243>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘DescTools’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/germinationmetrics.Rcheck/00install.out’ for details.
Package required but not available: ‘DiagrammeR’

Package suggested but not available for checking: ‘ggpubr’

VignetteBuilder package required for checking but not installed: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘gert-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpT8nTjk/file14bcb025cc5222/git_open.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Dandi Qiao <redaq@channing.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dandi",
                      family = "Qiao",
                      role = c("aut", "cre"),
                      email = "redaq@channing.harvard.edu"),
               person(given = c("Michael", "H."),
                      family = "Cho",
                      role = "aut"))
as necessary.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘query_gesla.R’ ‘query_gesla.Rd’ ‘write_gesla.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpLdrgcK/file1506561cf4bf6a': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpLdrgcK/file1506561cf4bf6a': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GetDFPData2', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gld_read_lattes_zip.R’
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lerato E Magosi <magosil86@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(con, "w") :
  cannot open file '/tmp/Rtmpfu8BN0/file14b79c7f565df9': No space left on device
Error in file(con, "w") : cannot open the connection
Execution halted
Maintainer: ‘Alexey Seleznev <selesnow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Seleznev",
                    role = c("aut", "cre"),
                    email = "selesnow@gmail.com")
as necessary.
Maintainer: ‘Marcelo S. Perlin <marceloperlin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcelo", "S."),
                    family = "Perlin",
                    role = c("aut", "cre"),
                    email = "marceloperlin@gmail.com")
as necessary.
Package required but not available: ‘bioRad’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Lerato E Magosi <magosil86@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Genaro Sucarrat <genaro.sucarrat@bi.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Genaro",
                      family = "Sucarrat",
                      role = c("aut", "cre"),
                      email = "genaro.sucarrat@bi.no"),
               person(given = "Felix",
                      family = "Pretis",
                      role = "aut"),
               person(given = "James",
                      family = "Reade",
                      role = "aut"),
               person(given = "Jonas",
                      family = "Kurle",
                      role = "ctb"),
               person(given = "Moritz",
                      family = "Schwarz",
                      role = "ctb"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘regressorsVariance.Rd’, ‘so2data.Rd’, ‘sp500data.Rd’, ‘vargaugeiis.Rd’
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Sydney Manning <sydney.manning@unthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhengyang",
                      family = "Zhou",
                      role = "aut"),
               person(given = "Sydney",
                      family = "Manning",
                      role = "cre",
                      email = "sydney.manning@unthsc.edu"))
as necessary.
Maintainer: ‘Alex J. Cannon <alex.cannon@canada.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ivan Bezerra Allaman <ivanalaman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ivan", "Bezerra"),
                      family = "Allaman",
                      role = c("aut", "cre"),
                      email = "ivanalaman@gmail.com"),
               person(given = c("Jose", "Claudio"),
                      family = "Faria",
                      role = "aut",
                      email = "joseclaudio.faria@gmail.com"))
as necessary.
Maintainer: ‘Tino Werner <tino.werner1@uni-oldenburg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  <arXiv:2301.12009>). We can verify the global hypothesis about equality
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sarah Friedrich <sarah.friedrich@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@math.uni-augsburg.de"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"),
               person(given = "Marc",
                      family = "Ditzhaus",
                      role = "aut"),
               person(given = "Philipp",
                      family = "Steinhauer",
                      role = "aut"))
as necessary.
checkRd: (-1) QANOVA.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:67: Lost braces in \itemize; meant \describe ?
Running examples in ‘GFDrmst-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RMST.test
> ### Title: Function to perform multiple RMST-based tests
> ### Aliases: RMST.test
> 
> ### ** Examples
> 
> data(colonCS, package = "condSURV")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘condSURV’
Calls: data -> find.package
Execution halted
Package required but not available: ‘survminer’

Package suggested but not available for checking: ‘condSURV’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jia-Han Shih <tommy355097@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jia-Han",
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "tommy355097@gmail.com")
as necessary.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.

The Description field contains
  found in Hong Zhang and Zheyang Wu (2020) <arXiv:2003.01286>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/Rtmp2oUixU/ltx152497487bae7d', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp2oUixU/ltx152497487bae7d/gfiConfInt.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
checkRd: (-1) gfonts.Rd:8: Lost braces; missing escapes or markup?
     8 | Download Google fonts and generate CSS to use in {rmarkdown} documents and
       |                                                  ^
checkRd: (-1) gfonts.Rd:9: Lost braces; missing escapes or markup?
     9 | {shiny} applications. Some popular fonts are included and ready to use.
       | ^
checkRd: (-1) use_pkg_gfont.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Use a Google Font included in {gfonts}}
       |                                      ^
Running massageExamples to create ‘gfonts-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpbDFQzz/file14fe3a5203a867/use_pkg_gfont.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mohamed Soudy <MohmedSoudy2009@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mohamed",
                    family = "Soudy",
                    role = c("aut", "cre"),
                    email = "mohmedsoudy2009@gmail.com")
as necessary.
Package required but not available: ‘ggmsa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggimage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘link_tetragon.Rd’, ‘magickGrob.Rd’, ‘mark_draw.Rd’, ‘mark_tetragon.Rd’, ‘mark_triangle.Rd’, ‘memo_order.Rd’, ‘new_tune.Rd’, ‘no_expansion.Rd’, ‘order2.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpA2bY6Z/ltx184cb95d64ce9c/align_order.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggalluvial.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GGally.Rcheck/00install.out’ for details.
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ggamma)
  > 
  > test_check("ggamma")
  Saving _problems/test_ggamma-111.R
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 22 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_ggamma.R:111:2'): ggamma equals gengamma.orig from flexsurv ────
  <functionNotFoundError/objectNotFoundError/error/condition>
  Error in `dgengamma.orig(x, b, a, k)`: could not find function "dgengamma.orig"
  Backtrace:
      ▆
   1. └─testthat::expect_equal(...) at test_ggamma.R:111:9
   2.   └─testthat::quasi_label(enquo(object), label)
   3.     └─rlang::eval_bare(expr, quo_get_env(quo))
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 22 ]
  Error:
  ! Test failures.
  Execution halted
Running massageExamples to create ‘gganimate-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpwZ5f7W/file155ce2554bbfd4/shadow_wake.R': No space left on device
Execution halted
 NONE
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6vzKeK/file155b6959be605/element_arrow.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crime.Rd’ ‘get_SVD.Rd’ ‘ggscreeplot.Rd’ ‘reflect.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpV0SJOB/file1622b2293a8ff9': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpV0SJOB/file1622b2293a8ff9': No such file or directory
Error in file(con, "r") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggbreak.Rmd’ using rmarkdown

Quitting from ggbreak.Rmd:349-365 [legend-subview]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ggimage'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggbreak.Rmd' failed with diagnostics:
there is no package called 'ggimage'
--- failed re-building ‘ggbreak.Rmd’

SUMMARY: processing the following file failed:
  ‘ggbreak.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jongbin Jung <me@jongbin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jongbin",
                    family = "Jung",
                    role = c("aut", "cre"),
                    email = "me@jongbin.com")
as necessary.
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
Author field differs from that derived from Authors@R
  Author:    ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpV2Rism/file15af5cead63ab/point_interval.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘girder_experiment.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpfAyFLs/file1537b272e6a4ed': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpfAyFLs/file1537b272e6a4ed': No such file or directory
Error in file(con, "r") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘shortcuts.Rmd’ using rmarkdown

Quitting from shortcuts.Rmd:14-19 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'labelled'
---
Backtrace:
    ▆
 1. └─base::library(labelled)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'shortcuts.Rmd' failed with diagnostics:
there is no package called 'labelled'
--- failed re-building ‘shortcuts.Rmd’

--- re-building ‘tests_and_coverage.Rmd’ using rmarkdown
--- finished re-building ‘tests_and_coverage.Rmd’

SUMMARY: processing the following file failed:
  ‘shortcuts.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Lindsay Rutter <ggenealogypackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lindsay",
                      family = "Rutter",
                      role = c("aut", "cre"),
                      email = "ggenealogypackage@gmail.com"),
               person(given = "Susan",
                      family = "Vanderplas",
                      role = "aut"),
               person(given = "Di",
                      family = "Cook",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp4rWLAn/Rf1524cf4758bca1': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpzGXBqz/Rf1563847123e53b': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Conversion of ‘README.md’ failed:
pandoc: /tmp/RtmpTLCagt/pandoc14af4d4b0c08ee.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Found the following assignments to the global environment:
File ‘ggExtra/R/ggMarginalGadget.R’:
  assign(plotname, eval(parse(text = origPlot)), envir = .GlobalEnv)
Packages required but not available: 'FactoMineR', 'tabxplor'

Packages suggested but not available for checking: 'finalfit', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpfaCP4r/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Package required but not available: ‘highcharter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggforestplotR-data-helpers.Rmd’ using rmarkdown
--- finished re-building ‘ggforestplotR-data-helpers.Rmd’

--- re-building ‘ggforestplotR-get-started.Rmd’ using rmarkdown
--- finished re-building ‘ggforestplotR-get-started.Rmd’

--- re-building ‘ggforestplotR-plot-customization.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp5GPQpw/Rf15e1c0123984fe': No space left on device

Quitting from ggforestplotR-plot-customization.Rmd:158-163 [logistic-regression]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from ggforestplotR-plot-customization.Rmd:158-163 [logistic-regression]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggforestplotR-plot-customization.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘ggforestplotR-plot-customization.Rmd’

SUMMARY: processing the following file failed:
  ‘ggforestplotR-plot-customization.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘labelled’

Package suggested but not available for checking: ‘mosaic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error: inferior call failed
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpkVelBi/Rf1571e2778847b1': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running massageExamples to create ‘ggguides-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpIXEu8U/file15989451160f00/legend_inside.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting-started.Rmd’ using rmarkdown
--- finished re-building ‘getting-started.Rmd’

--- re-building ‘multiple-legends.Rmd’ using rmarkdown
--- finished re-building ‘multiple-legends.Rmd’

--- re-building ‘patchwork.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp105Tz6/Rf1606b673bb0961': No space left on device

Quitting from patchwork.Rmd:204-209 [shared-legend-stacked]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from patchwork.Rmd:204-209 [shared-legend-stacked]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'patchwork.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘patchwork.Rmd’

--- re-building ‘positioning.Rmd’ using rmarkdown
--- finished re-building ‘positioning.Rmd’

--- re-building ‘styling.Rmd’ using rmarkdown
--- finished re-building ‘styling.Rmd’

SUMMARY: processing the following file failed:
  ‘patchwork.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Seth Caldwell <caldwellst@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘gghdx.Rmd’ using rmarkdown

Quitting from gghdx.Rmd:100-107 [extrafont]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! Failed to open file /tmp/Rtmp6c86Bn/nwpBtKy2OAdR1K-IwhWudF-R9QMylBJAV3Bo8Ky461EN_io6npfB.ttf.curltmp.
---
Backtrace:
    ▆
 1. └─sysfonts::font_add_google("Source Sans 3")
 2.   └─sysfonts:::download_font_file(r.url, repo, handle = handle)
 3.     └─curl::curl_download(url, dest, handle = handle)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gghdx.Rmd' failed with diagnostics:
Failed to open file /tmp/Rtmp6c86Bn/nwpBtKy2OAdR1K-IwhWudF-R9QMylBJAV3Bo8Ky461EN_io6npfB.ttf.curltmp.
--- failed re-building ‘gghdx.Rmd’

SUMMARY: processing the following file failed:
  ‘gghdx.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘gghinton.Rmd’ using rmarkdown

Quitting from gghinton.Rmd:137-162 [scale-by]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/Rtmpr4caPg/file15ac32360caad5'
---
Backtrace:
    ▆
 1. ├─base::withVisible(knit_print(x, ...))
 2. ├─knitr::knit_print(x, ...)
 3. └─knitr:::knit_print.default(x, ...)
 4.   └─knitr::normal_print(x)
 5.     ├─base::print(x)
 6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
 7.       └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gghinton.Rmd' failed with diagnostics:
could not open file '/tmp/Rtmpr4caPg/file15ac32360caad5'
--- failed re-building ‘gghinton.Rmd’

--- re-building ‘mackay-itila.Rmd’ using rmarkdown
[WARNING] Could not fetch resource ../img/itila-fig2.1.png
[WARNING] Could not fetch resource ../img/itila-fig2.2.png
[WARNING] Could not fetch resource ../img/itila-fig2.3.png
[WARNING] Could not fetch resource ../img/itila-fig2.5.png
--- finished re-building ‘mackay-itila.Rmd’

--- re-building ‘use-cases.Rmd’ using rmarkdown
--- finished re-building ‘use-cases.Rmd’

--- re-building ‘why-hinton.Rmd’ using rmarkdown
--- finished re-building ‘why-hinton.Rmd’

SUMMARY: processing the following file failed:
  ‘gghinton.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggimage.Rcheck/00install.out’ for details.
cannot open the connection
problem found in ‘geom_rect_img.Rd’
Error(s) in re-building vignettes:
  ...
sh: 1: cannot create /tmp/Rtmp6uK8mY/file15cb834762d7c0: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp6uK8mY/file15cb834762d7c0': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: <Anonymous> -> cat -> readLines -> file
Execution halted
Packages required but not available: 'tidyverse', 'RSDA', 'ggpubr'

Packages suggested but not available for checking:
  'HistDAWass', 'MAINT.Data'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sjmisc’

Packages suggested but not available for checking: 'ztable', 'moonBook'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ActCR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘broom.mixed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gglycan.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘gglyph.Rmd’ using rmarkdown

Quitting from gglyph.Rmd:77-94 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gglyph.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘gglyph.Rmd’

SUMMARY: processing the following file failed:
  ‘gglyph.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggmap.Rcheck/00install.out’ for details.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpDbmQ8Q/Rf15719419ba577a': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Packages required but not available: 'GGally', 'sna'

Packages suggested but not available for checking:
  'car', 'NetworkToolbox', 'NetworkComparisonTest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmplEKOOg/ltx15d0a4a360dcc/MarkEqRcg.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugo",
                    family = "Gasca-Aragon",
                    role = c("aut", "cre"),
                    email = "hugo_gasca_aragon@hotmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ggmugs.R’
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptQJzLA/file155bd52cd80580/shapefile_list.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Trevor L. Davis <trevor.l.davis@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
checkRd: (-1) pcp_scale.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:54-55: Lost braces in \itemize; meant \describe ?
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpHPjBN8/Rf15c8c139161cbb': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘wraping-around-ggplot2.Rmd’ using rmarkdown

Quitting from wraping-around-ggplot2.Rmd:35-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/RtmpwJKeO2/file15f3455aea8c9f'
---
Backtrace:
    ▆
 1. ├─base::withVisible(knit_print(x, ...))
 2. ├─knitr::knit_print(x, ...)
 3. └─knitr:::knit_print.default(x, ...)
 4.   └─knitr::normal_print(x)
 5.     ├─base::print(x)
 6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
 7.       └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wraping-around-ggplot2.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpwJKeO2/file15f3455aea8c9f'
--- failed re-building ‘wraping-around-ggplot2.Rmd’

SUMMARY: processing the following file failed:
  ‘wraping-around-ggplot2.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'tidygraph', 'ggraph'

Packages suggested but not available for checking:
  'ALDEx2', 'GGally', 'lefser', 'Maaslin2', 'clusterProfiler',
  'enrichplot', 'DOSE'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'moonBook', 'editData'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ggplotify.Rmd’ using rmarkdown

Quitting from ggplotify.Rmd:26-37 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggimage'
---
Backtrace:
    ▆
 1. └─base::library("ggimage")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggplotify.Rmd' failed with diagnostics:
there is no package called 'ggimage'
--- failed re-building ‘ggplotify.Rmd’

SUMMARY: processing the following file failed:
  ‘ggplotify.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Philipp Angerer <phil.angerer@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Aleksandr Pogodaev <alex.pogodaev@novartis.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘GGally’

Packages suggested but not available for checking:
  'lixoftConnectors', 'xgxr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggimage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rstatix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Samer Mouksassi <samermouksassi@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available:
  'GGally', 'ggpubr', 'Hmisc', 'plotly', 'rms', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Ehrlinger <john.ehrlinger@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpsGasun/Rf14c2356170fa97': No space left on device
Package required but not available: ‘randomForestSRC’

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Lin Pedersen <thomasp85@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘sfnetworks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Packages required but not available: 'rms', 'nomogramFormula'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmplvpqaP/ltx15f22621ec9075/axis_line.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg3d.Rcheck/00install.out’ for details.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpwWFTjz/Rf15e83327c0afa5': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Fatal error: cannot create 'R_TempDir'
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptiH2QG/file15cdf7411a0bc9/available_cortical_surfaces.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggseg.Rcheck/00install.out’ for details.
Packages required but not available:
  'blavaan', 'qgraph', 'semPlot', 'smplot2', 'tidySEM'

Package suggested but not available for checking: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Constantin Ahlmann-Eltze <artjom31415@googlemail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Constantin Ahlmann-Eltze [aut, cre, ctb] (<https://orcid.org/0000-0002-3762-068X>, @const_ae), Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Constantin Ahlmann-Eltze [aut, cre, ctb] (ORCID: <https://orcid.org/0000-0002-3762-068X>, Twitter: @const_ae), Indrajeet Patil [aut, ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Maintainer: ‘Richard G Everitt <richard.g.everitt@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmppnaL5u/Rd2pdf15b127621df8ff/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Felipe Carvalho <lipecaso@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp1pJeIo/Rf15eca34446168': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggspatial.Rcheck/00install.out’ for details.
Packages required but not available:
  'photobiology', 'photobiologyWavebands'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggsql.Rcheck/00install.out’ for details.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6fTXvV/file162b6d65a4df27/ggstackplot.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Conversion of ‘NEWS.md’ failed:
pandoc: /tmp/RtmpBh7GOL/pandoc15be6535f1d047.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Package required but not available: ‘statsExpressions’

Package suggested but not available for checking: ‘afex’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brittany Alexander <balexanderstatistics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brittany",
                    family = "Alexander",
                    role = c("aut", "cre"),
                    email = "balexanderstatistics@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Brenton M. Wiernik [aut, cre] (<https://orcid.org/0000-0001-9560-6336>, @bmwiernik)’
  Authors@R: ‘Claus O. Wilke [aut] (ORCID: <https://orcid.org/0000-0002-7470-9261>), Brenton M. Wiernik [aut, cre] (ORCID: <https://orcid.org/0000-0001-9560-6336>, Twitter: @bmwiernik)’
Maintainer: ‘Calli Gross <ggthemeassist@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Calli",
                      family = "Gross",
                      role = c("aut", "cre"),
                      email = "ggthemeassist@icloud.com"),
               person(given = "Philipp",
                      family = "Ottolinger",
                      role = c("aut", "ctb")))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_donut.Rd’ ‘geom_donut_slice.Rd’ ‘geom_pie.Rd’
    ‘geom_series_circles.Rd’ ‘geom_series_text.Rd’ ‘geom_slice.Rd’
    ‘stat-series-circles.R’
checkRd: (-1) MODFIT.Rd:33: Lost braces; missing escapes or markup?
    33 |   {chisq_i = sum( (O_iz - E_iz)^2 / E_iz; z = 0, ..., C ), }
       |   ^
checkRd: (-1) probs.GGUM.Rd:27: Lost braces; missing escapes or markup?
    27 |   GUM-based probabilities just constrain alpha to a unit vector of length {I}
       |                                                                           ^
Fatal error: cannot create 'R_TempDir'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Maintainer: ‘Hadley Wickham <hadley@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmplO7iAx/Rd2pdf15ef60d974d1e/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Siyavash Shabani <s.shabani.aut@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyavash",
                      family = "Shabani",
                      role = c("aut", "cre"),
                      email = "s.shabani.aut@gmail.com"),
               person(given = "Reza",
                      family = "Rawassizadeh",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GHRmodel.Rcheck/00install.out’ for details.
Maintainer: ‘Giona Casiraghi <giona@ethz.ch>’

Reading Rd files failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘Significantlinks.Rmd’ using rmarkdown
--- finished re-building ‘Significantlinks.Rmd’

--- re-building ‘Tutorial_NRM.Rmd’ using rmarkdown

Quitting from Tutorial_NRM.Rmd:66-71 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggraph'
---
Backtrace:
    ▆
 1. └─base::library(ggraph)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Tutorial_NRM.Rmd' failed with diagnostics:
there is no package called 'ggraph'
--- failed re-building ‘Tutorial_NRM.Rmd’

--- re-building ‘tutorial.Rmd’ using rmarkdown
--- finished re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘Tutorial_NRM.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Shiyun Lin <linshy27@mail2.sysu.edu.cn>’

The Description field contains
  <arXiv:1407.7819>. Secondly, a closed form solution for graphical lasso
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  (2021) <arXiv:2102.10670>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) gigg.Rd:70-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Josef",
                      family = "Leydold",
                      role = c("aut", "cre"),
                      email = "josef.leydold@wu.ac.at"),
               person(given = "Wolfgang",
                      family = "Hormann",
                      role = "aut"))
as necessary.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘dynutils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'graphicalVAR', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggpubr', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'MIIVsem', 'imputeTS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Han Zhang <zhangh.ustc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangh.ustc@gmail.com"),
               person(given = "Kai",
                      family = "Yu",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘GiniDecompLY.Rmd’ using rmarkdown

Quitting from GiniDecompLY.Rmd:77-79 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'dineq'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GiniDecompLY.Rmd' failed with diagnostics:
there is no package called 'dineq'
--- failed re-building ‘GiniDecompLY.Rmd’

SUMMARY: processing the following file failed:
  ‘GiniDecompLY.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Dao Nguyen <dxnguyen@go.olemiss.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dao",
                      family = "Nguyen",
                      role = c("aut", "cre"),
                      email = "dxnguyen@go.olemiss.edu"),
               person(given = "Xin",
                      family = "Dang",
                      role = "aut"))
as necessary.

The Description field contains
  Nguyen, D., Chen, Y. and Zhang, J., (2018) <arXiv:1809.09793>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘GiniVarInterval.Rmd’ using rmarkdown

Quitting from GiniVarInterval.Rmd:124-137 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'DescTools'
---
Backtrace:
    ▆
 1. ├─microbenchmark::microbenchmark(...)
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GiniVarInterval.Rmd' failed with diagnostics:
there is no package called 'DescTools'
--- failed re-building ‘GiniVarInterval.Rmd’

SUMMARY: processing the following file failed:
  ‘GiniVarInterval.Rmd’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘rtgin1.R’
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhadip",
                    family = "Datta",
                    role = c("aut", "cre"),
                    email = "subhadipdatta007@gmail.com")
as necessary.
Maintainer: ‘Anna Klimova <aklimova25@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Anna",
                      family = "Klimova",
                      role = c("aut", "cre"),
                      email = "aklimova25@gmail.com"),
               person(given = "Tamas",
                      family = "Rudas",
                      role = "aut"))
as necessary.
Maintainer: ‘Siddhanta Phuyal <siddhantaphuyal7159@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = c("Siddhanta", "Phuyal", "Mamunur", "Rashid", "<mrashid@depauw.edu>", "Jyotirmoy", "Sarkar"),
                      family = "<jsarkar@iupui.edu>",
                      role = "aut",
                      email = "jsarkar@iupui.edu"),
               person(given = "Siddhanta",
                      family = "Phuyal",
                      role = "cre",
                      email = "siddhantaphuyal7159@gmail.com"))
as necessary.
Package required but not available: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gistr.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mike Beer <mbeer@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahmoud",
                      family = "Ghandi",
                      role = "aut"),
               person(given = "Mike",
                      family = "Beer",
                      role = "cre",
                      email = "mbeer@jhu.edu"))
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marina Gomtsyan <marina.gomtsyan@agroparistech.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "M.",
                      family = "Gomtsyan",
                      role = "aut"),
               person(given = "C.",
                      family = "Levy-Leduc",
                      role = "aut"),
               person(given = "S.",
                      family = "Ouadah",
                      role = "aut"),
               person(given = "L.",
                      family = "Sansonnet",
                      role = "aut"),
               person(given = "Marina",
                      family = "Gomtsyan",
                      role = "cre",
                      email = "marina.gomtsyan@agroparistech.fr"))
as necessary.

The Description field contains
  (2020), <arXiv:2007.08623v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Julien Clavel <julien.clavel@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matyas", "A"),
                      family = "Sustik",
                      role = c("aut", "cph")),
               person(given = "Ben",
                      family = "Calderhead",
                      role = c("aut", "cph")),
               person(given = "Julien",
                      family = "Clavel",
                      role = c("com", "ctb", "cre"),
                      email = "julien.clavel@hotmail.fr"))
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stat.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = c("aut", "cre"),
                      email = "tibs@stat.stanford.edu"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ingmar Visser <i.visser@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ingmar",
                    family = "Visser",
                    role = c("aut", "cre"),
                    email = "i.visser@uva.nl")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpfBwgLJ/file177f333dcef143': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpfBwgLJ/file177f333dcef143': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Michael Lim <michael626@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lim",
                      role = c("aut", "cre"),
                      email = "michael626@gmail.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Running examples in ‘glinvci-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_restricted_ou
> ### Title: Convenience function for constructing restricted/reparameterised
> ###   OU parameterisation function.
> ### Aliases: get_restricted_ou
> 
> ### ** Examples
> 
> ### --- STEP 1: Make an example tree
> set.seed(0x5EEDL, kind='Super-Duper')
> ntips = 200
> k     = 2                 # No. of trait dimensions
> tr    = ape::rtree(ntips) 
> x0    = rnorm(k)
> 
> ### --- STEP 2: Make a model which has unrestricted H, fixed theta and diagonal Sigma_x'.
> repar = get_restricted_ou(H=NULL, theta=c(3,1), Sig='diag', lossmiss=NULL)
> mod   = glinv(tr, x0, X=NULL,
+               pardims =repar$nparams(k),
+               parfns  =repar$par,
+               parjacs =repar$jac,
+               parhess =repar$hess)
> # Actually, to save typing, the following short-cut call is the same as the above:
> # mod = glinv(tr, x0, X=NULL, repar=repar)
> 
> ### --- STEP 3: Set up parameters; H, theta, and sig_x needs to be concatenated
> H     = matrix(c(1,0,0,-1), k)
> theta = c(3,1)
> sig   = matrix(c(0.25,0,0,0.25), k)
> sig_x = t(chol(sig))
> par_truth = c(H=H, sig_x=c(0.5,0.5))
> 
> ### --- STEP 4: Get a simulated data set to toy with
> X = rglinv(mod, par=par_truth)
> set_tips(mod, X)
> 
> ### --- STEP 5: Make an unrestricted model object to compare with the one
> ### whose parameters are restricted.
> mod_unrestricted = glinv(tr, x0, X,
+                          pardims=nparams_ou(k),
+                          parfns=oupar,
+                          parjacs=oujac,
+                          parhess=ouhess)
Error in glinv(tr, x0, X, pardims = nparams_ou(k), parfns = oupar, parjacs = oujac,  : 
  All dimensions at Node #1 are either lost or missing
Execution halted
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Duffy <David.Duffy@qimrberghofer.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Duffy.", "C", "code", "in", "emgllmfitter", "by", "Andreas", "Borg"),
                      family = "<borg@imbei.uni-mainz.de>",
                      role = "aut",
                      email = "borg@imbei.uni-mainz.de"),
               person(given = "David",
                      family = "Duffy",
                      role = "cre",
                      email = "David.Duffy@qimrberghofer.edu.au"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette1.Rmd’ using rmarkdown
--- finished re-building ‘vignette1.Rmd’

--- re-building ‘vignette10.Rmd’ using rmarkdown
--- finished re-building ‘vignette10.Rmd’

--- re-building ‘vignette2.rmd’ using rmarkdown

Quitting from vignette2.rmd:46-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/Rtmpg5fjAR/file1964a8c531868'
---
Backtrace:
    ▆
 1. ├─base::plot(log(meanY), varY, log = "y", main = "Species mean-variance relationship")
 2. └─graphics::plot.default(log(meanY), varY, log = "y", main = "Species mean-variance relationship")
 3.   └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'vignette2.rmd' failed with diagnostics:
could not open file '/tmp/Rtmpg5fjAR/file1964a8c531868'
--- failed re-building ‘vignette2.rmd’

--- re-building ‘vignette3.rmd’ using rmarkdown
--- finished re-building ‘vignette3.rmd’

--- re-building ‘vignette4.rmd’ using rmarkdown
--- finished re-building ‘vignette4.rmd’

--- re-building ‘vignette5.Rmd’ using rmarkdown
--- finished re-building ‘vignette5.Rmd’

--- re-building ‘vignette6.Rmd’ using rmarkdown
--- finished re-building ‘vignette6.Rmd’

--- re-building ‘vignette7.Rmd’ using rmarkdown
--- finished re-building ‘vignette7.Rmd’

--- re-building ‘vignette8.Rmd’ using rmarkdown
--- finished re-building ‘vignette8.Rmd’

--- re-building ‘vignette9.Rmd’ using rmarkdown
--- finished re-building ‘vignette9.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette2.rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Mark W. Donoghoe <markdonoghoe@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
checkRd: (-1) NEWS.Rd:16: Lost braces; missing escapes or markup?
    16 |         \item Now \code{AICc == Inf} when {n <= p + 1}.
       |                                           ^
sh: 1: cannot create /tmp/RtmpasnGr7/xshell172ae754661cc3: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpasnGr7/xshell172ae754661cc3': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Canhong Wen <wencanhong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Canhong",
                      family = "Wen",
                      role = c("aut", "cre"),
                      email = "wencanhong@gmail.com"),
               person(given = "Hao",
                      family = "Lin",
                      role = "aut"),
               person(given = "Xueqin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Package required but not available: ‘glmmTMB’

Packages suggested but not available for checking:
  'DHARMa', 'flextable', 'ftExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matt P. Wand <matt.wand@uts.edu.au>’

The Description field contains
  Johnstone, Ormerod, Wand and Yu (2018) <arXiv:1805.08423v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) glmmSimData.Rd:4: Lost braces; missing escapes or markup?
     4 | \description{Section 4.1.2 of the refence below descries a simulation study with data generated from a probit mixed model with six fixed effects parameters and a bivariate random effects vector having a 2 by 2 symmetric positive definite covariance matrix. The function simulates a data set from this model with 2500 groups and the number of observation in each group being a random draw from {20,21,...,30}.}
       |                                                                                                                                                                                                                                                                                                                                                                                                          ^
Package required but not available: ‘broom.mixed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘BinBerTest.R’ [5s/15s]
  Comparing ‘BinBerTest.Rout’ to ‘BinBerTest.Rout.save’ ... OK
  Running ‘binomfamtest.R’ [1s/2s]
  Comparing ‘binomfamtest.Rout’ to ‘binomfamtest.Rout.save’ ... OK
  Running ‘cfamilies.R’ [1s/2s]
  Comparing ‘cfamilies.Rout’ to ‘cfamilies.Rout.save’ ...
Packages required but not available: 'car', 'ggpubr', 'glmmTMB', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pbkrtest’

Packages suggested but not available for checking:
  'car', 'DHARMa', 'broom.mixed'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Coxnet.Rmd’ using rmarkdown
--- finished re-building ‘Coxnet.Rmd’

--- re-building ‘coxdev.Rmd’ using rmarkdown
--- finished re-building ‘coxdev.Rmd’

--- re-building ‘glmnet-history.Rmd’ using rmarkdown
--- finished re-building ‘glmnet-history.Rmd’

--- re-building ‘glmnet.Rmd’ using rmarkdown
--- finished re-building ‘glmnet.Rmd’

Fatal error: cannot create 'R_TempDir'
--- re-building ‘relax.Rmd’ using rmarkdown
--- finished re-building ‘relax.Rmd’

SUMMARY: processing the following file failed:
  ‘glmnetFamily.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘randomForestSRC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mee Young Park <meeyoung@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mee", "Young"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "meeyoung@google.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Maintainer: ‘F. William Townes <will.townes@gmail.com>’

The Description field contains
  <arXiv:1907.02647>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘glmpca.Rd’:
    https://doi.org/10.1186/s13059-019-1861-6
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter K. Dunn <pdunn2@usc.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "K."),
                      family = "Dunn",
                      role = c("cre", "aut"),
                      email = "pdunn2@usc.edu.au"),
               person(given = c("Gordon", "K."),
                      family = "Smyth",
                      role = "aut"))
as necessary.
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                            ^
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                                                ^
checkRd: (-1) galapagos.Rd:4: Lost braces
     4 | \title{{Gal\'{a}pagos} Island species data}
       |              ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                      ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |    ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |          ^
checkRd: (-1) galapagos.Rd:44: Lost braces
    44 |   Species number and endemism: The {Gal\'{a}pagos} Archipelago revisited.
       |                                          ^
Maintainer: ‘Greg McMahan <gmcmacran@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "McMahan",
                    role = c("aut", "cre"),
                    email = "gmcmacran@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glmtoolbox.Rcheck/00install.out’ for details.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) coef.glmulti.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) consensus.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) getfit.Rd:14: Lost braces
    14 |   \item{object}{A fitted model object, of class \code{glm}, \code{lm} or code{glm.nb}}
       |                                                                              ^
checkRd: (-1) getfit.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-class.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-methods.Rd:14: Lost braces
    14 | code{glmulti} finds what are the \code{n} best models (the confidence set of models) among all possible models (the candidate set, as specified by the user).
       |     ^
checkRd: (-1) glmulti.Rd:99: Escaped LaTeX specials: \&
checkRd: (-1) summary.glmulti.Rd:72: Escaped LaTeX specials: \&
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ying",
                      family = "Nan",
                      role = "aut",
                      email = "nanx0006@gmail.com"),
               person(given = "Yanjia",
                      family = "Yu",
                      role = "aut",
                      email = "yuxxx748@umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuhong",
                      family = "Yang",
                      role = "aut",
                      email = "yyang@stat.umn.edu"))
as necessary.
Maintainer: ‘Katharine Mullen <katharine.mullen@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Katharine",
                    family = "Mullen",
                    role = c("aut", "cre"),
                    email = "katharine.mullen@stat.ucla.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mary E. Savino <mary.savino@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M.", "E."),
                      family = "Savino",
                      role = "aut"),
               person(given = c("Mary", "E."),
                      family = "Savino",
                      role = "cre",
                      email = "mary.savino@outlook.fr"))
as necessary.

The Description field contains
  Lévy-Leduc, C. (2023), <arXiv:2306.00686>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Unavailable namespace imported from by a ':::' call: ‘fxregime’
  See the note in ?`:::` about the use of this operator.
Package required but not available: ‘LorenzRegression’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'automap', 'blockCV'

Packages suggested but not available for checking: 'flexsdm', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Krzysztof Bartoszek <krzbar@protonmail.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Krzysztof",
                    family = "Bartoszek",
                    role = c("aut", "cre"),
                    email = "krzbar@protonmail.ch")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sergio Contador <scontador@ucm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Contador",
                    role = c("aut", "cre"),
                    email = "scontador@ucm.es")
as necessary.
checkRd: (-1) rtheta.Rd:50-76: Lost braces in \itemize; meant \describe ?
Note: skipping ‘GMCM-JStatSoft.Rnw’ due to unavailable dependencies:
  'Hmisc'
Maintainer: ‘Osman Dag <osman.dag@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osman",
                      family = "Dag",
                      role = c("aut", "cre"),
                      email = "osman.dag@outlook.com"),
               person(given = "Erdem",
                      family = "Karabulut",
                      role = "aut"),
               person(given = "Reha",
                      family = "Alpar",
                      role = "aut"),
               person(given = "Merve",
                      family = "Kasikci",
                      role = "ctb"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Osman Dag <osman.dag@hacettepe.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osman",
                      family = "Dag",
                      role = c("aut", "cre"),
                      email = "osman.dag@hacettepe.edu.tr"),
               person(given = "Ceylan",
                      family = "Yozgatligil",
                      role = "aut"))
as necessary.
Maintainer: ‘Manuel Villacorta Tilve <mvt.oviedo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Manuel", "Villacorta"),
                    family = "Tilve",
                    role = c("aut", "cre"),
                    email = "mvt.oviedo@gmail.com")
as necessary.
Maintainer: ‘Herve Cardot <herve.cardot@u-bourgogne.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Herve",
                    family = "Cardot",
                    role = c("aut", "cre"),
                    email = "herve.cardot@u-bourgogne.fr")
as necessary.
Running examples in ‘gmfamm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mface_cyc
> ### Title: Multilevel functional principal components analysis with fast
> ###   covariance estimation
> ### Aliases: mface_cyc
> 
> ### ** Examples
> 
> require(refund)
Loading required package: refund
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘refund’
> data(DTI)
Warning in data(DTI) : data set ‘DTI’ not found
> mfpca.DTI <- mfpca.face(Y = DTI$cca, id = DTI$ID, twoway = TRUE)
Error in mfpca.face(Y = DTI$cca, id = DTI$ID, twoway = TRUE) : 
  could not find function "mfpca.face"
Execution halted
Maintainer: ‘Andrea Martino <andrea.martino@polimi.it>’

The Description field contains
  Ieva, F. and Paganoni A. M. (2017) <arXiv:1708.00386>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpvi3g8x/file17e40f252c6d5c': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpvi3g8x/file17e40f252c6d5c': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andreas Groll <groll@mathematik.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Groll",
                    role = c("aut", "cre"),
                    email = "groll@mathematik.uni-muenchen.de")
as necessary.
Note: skipping ‘gmm_with_R.rnw’ due to unavailable dependencies: 'car'
Running examples in ‘gmnl-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AIC.gmnl
> ### Title: Akaike's Information Criterion
> ### Aliases: AIC.gmnl BIC.gmnl
> 
> ### ** Examples
> 
> 
> ## Estimate MNL model
> data("TravelMode", package = "AER")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘AER’
Calls: data -> find.package
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp8i6YJl/ltx17956c77c26963/cov.gmnl.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Running examples in ‘GmooG-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GapLifeE
> ### Title: Life expectancy data from Gapminder
> ### Aliases: GapLifeE
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(GapLifeE, package="GmooG")
> library(tidyverse)
Error in library(tidyverse) : there is no package called ‘tidyverse’
Execution halted
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Yaofang Hu <yaofang.hu@u.nus.edu>’

The Description field contains
  <arXiv:2006.03284>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘1-pitch-normalize-value.R’
Author field differs from that derived from Authors@R
  Author:    ‘Jan Philipp Dietrich [aut, cre] (Potsdam Institute for Climate Impact Research, <https://orcid.org/0000-0002-4309-6431>), David Klein [aut] (Potsdam Institute for Climate Impact Research), Anastasis Giannousakis [aut], Felicitas Beier [aut] (Potsdam Institute for Climate Impact Research), Johannes Koch [aut] (Potsdam Institute for Climate Impact Research), Lavinia Baumstark [aut] (Potsdam Institute for Climate Impact Research), Mika Pflüger [aut], Oliver Richters [aut] (Potsdam Institute for Climate Impact Research)’
  Authors@R: ‘Jan Philipp Dietrich [aut, cre] (affiliation: Potsdam Institute for Climate Impact Research, ORCID: <https://orcid.org/0000-0002-4309-6431>), David Klein [aut] (affiliation: Potsdam Institute for Climate Impact Research), Anastasis Giannousakis [aut], Felicitas Beier [aut] (affiliation: Potsdam Institute for Climate Impact Research), Johannes Koch [aut] (affiliation: Potsdam Institute for Climate Impact Research), Lavinia Baumstark [aut] (affiliation: Potsdam Institute for Climate Impact Research), Mika Pflüger [aut], Oliver Richters [aut] (affiliation: Potsdam Institute for Climate Impact Research)’
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpboblfU/file1764362fd58375': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpboblfU/file1764362fd58375': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘wv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘wv’

Package suggested but not available for checking: ‘simts’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ali Saeb <ali.saeb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ali",
                    family = "Saeb",
                    role = c("aut", "cre"),
                    email = "ali.saeb@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘gnmOverview.Rnw’ using Sweave
Warning in file() :
  cannot open file '/tmp/RtmphiVoUW/Rf17dab14ab84de9': No space left on device
Error: processing vignette 'gnmOverview.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘gnmOverview.Rnw’

SUMMARY: processing the following file failed:
  ‘gnmOverview.Rnw’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp8JqfZ7/ltx17e12a45d67209/summary.gnm.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maryclare Griffin <maryclaregriffin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maryclare",
                    family = "Griffin",
                    role = c("aut", "cre"),
                    email = "maryclaregriffin@gmail.com")
as necessary.
Maintainer: ‘Annarosa Quarello <quarello.annarosa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annarosa",
                      family = "Quarello",
                      role = c("aut", "cre"),
                      email = "quarello.annarosa@gmail.com"),
               person(given = "Emilie",
                      family = "Lebarbier",
                      role = "aut"),
               person(given = "Olivier",
                      family = "Bock",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.04683>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Karoly Antal <antalk2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karoly",
                      family = "Antal.",
                      role = "aut",
                      email = "antalk2@gmail.com"),
               person(given = "Karoly",
                      family = "Antal",
                      role = "cre",
                      email = "antalk2@gmail.com"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpLUciuC/file174e8b2a1bc7a9': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpLUciuC/file174e8b2a1bc7a9': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘ggraph’

Packages suggested but not available for checking:
  'AnnotationDbi', 'GO.db', 'org.Hs.eg.db', 'org.Pt.eg.db',
  'org.Mmu.eg.db', 'org.Mm.eg.db', 'org.Rn.eg.db', 'org.Dr.eg.db',
  'org.Dm.eg.db', 'org.Ce.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'vegdata', 'BiodiversityR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘epiR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘gofCopula-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>’

The BugReports field in DESCRIPTION has
  https://github.com/egarpor/goffda
which should likely be
  https://github.com/egarpor/goffda/issues
instead.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bruno Ebner <bruno.ebner@kit.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘AD.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘BE.Rd’:
    https://doi.org/10.1007/s00184-019-00708-7
  File ‘CM.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘HME1.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘HME2.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘KS.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘WA.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘gamma_est.Rd’:
    https://doi.org/10.1080/00949650108812100
  File ‘test.AD.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.BE.Rd’:
    https://doi.org/10.1007/s00184-019-00708-7
  File ‘test.CM.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.HME1.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.HME2.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.KS.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.WA.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpcj2oTw/ltx176441414d3cbc/create_asset.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Elizabeth Gonzalez-Estrada <egonzalez@colpos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elizabeth",
                      family = "Gonzalez-Estrada",
                      role = c("aut", "cre"),
                      email = "egonzalez@colpos.mx"),
               person(given = c("Jose", "A."),
                      family = "Villasenor-Alva",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cauchy.test.Rd’:
    https://doi.org/10.1080/00949655.2017.1404604
  File ‘de.test.Rd’:
    https://doi.org/10.1016/j.spl.2016.07.003
  File ‘ev.test.Rd’:
    https://doi.org/10.1080/00949655.2017.1404604
    https://doi.org/10.1080/03610910903528293
  File ‘gamma.fit.Rd’:
    http://dx.doi.org/10.1016/j.spl.2014.10.001
  File ‘gamma.test.Rd’:
    http://dx.doi.org/10.1016/j.spl.2014.10.001
  File ‘gp.fit.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.04.001
  File ‘gp.test.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.04.001
  File ‘ig.test.Rd’:
    http://dx.doi.org/10.1016/j.spl.2015.06.017
    https://doi.org/10.1007/s13571-017-0148-8
  File ‘mvShapiro.Test.Rd’:
    http://dx.doi.org/10.1080/03610920802474465
  File ‘normal.Rd’:
    http://dx.doi.org/10.1080/03610918.2013.810261
  File ‘sn.Rd’:
    https://doi.org/10.1080/00949655.2019.1658763
Running massageExamples to create ‘goldfish-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpXLhXzO/file17c35736b0aac4', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpXLhXzO/file17c35736b0aac4/GatherPreprocessing.R': No such file or directory
Execution halted
 NONE
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [20s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(golem)
  > 
  > test_check("golem")
  Starting 2 test processes.
  Saving _problems/test-use_utils-20.R
  [ FAIL 1 | WARN 0 | SKIP 6 | PASS 284 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-add_dockerfiles.R:13:3',
    'test-add_dockerfiles_renv.R:2:3', 'test-after_creation_msg.R:1:1',
    'test-browser_button.R:1:1', 'test-config.R:97:1', 'test-cats.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-use_utils.R:17:5'): use_utils_ui works ─────────────────────────
  <ENOSPC/fs_error/error/condition>
  Error: [ENOSPC] Failed to copy '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/golem/utils/golem_utils_ui.R' to '/tmp/Rtmpvh1zXt/dummygolem/R/golem_utils_ui.R': no space left on device
  Backtrace:
      ▆
   1. ├─golem:::run_quietly_in_a_dummy_golem(...) at test-use_utils.R:2:3
   2. │ ├─withr::with_options(...) at ./setup.R:320:3
   3. │ │ └─base::force(code)
   4. │ └─withr::with_dir(dummy_golem, expr) at ./setup.R:323:7
   5. │   └─base::force(code)
   6. └─golem::use_utils_ui(".", with_test = TRUE) at test-use_utils.R:17:5
   7.   └─golem:::use_utils(...)
   8.     └─golem:::fs_file_copy(path = golem_sys("utils", file_name), new_path = destination)
   9.       └─fs::file_copy(path = path, new_path = new_path, overwrite)
  
  [ FAIL 1 | WARN 0 | SKIP 6 | PASS 284 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Packages required but not available: 'flexsurv', 'modelr'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kalifa Manjang <kalifamanjang1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kalifa",
                    family = "Manjang",
                    role = c("aut", "cre"),
                    email = "kalifamanjang1@gmail.com")
as necessary.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘GoodmanKruskal.Rmd’ using rmarkdown

Quitting from GoodmanKruskal.Rmd:150-150
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
object 'Greene' not found
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from GoodmanKruskal.Rmd:150-150
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eval(parse_only(code), envir = envir)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from GoodmanKruskal.Rmd:150-150
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Greene
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from GoodmanKruskal.Rmd:150-150
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
any
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GoodmanKruskal.Rmd' failed with diagnostics:
object 'Greene' not found
--- failed re-building ‘GoodmanKruskal.Rmd’

SUMMARY: processing the following file failed:
  ‘GoodmanKruskal.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘Goodreader-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: search_goodreads
> ### Title: Search Goodreads
> ### Aliases: search_goodreads
> 
> ### ** Examples
> 
> search_goodreads("parenting", search_in = "title", num_books = 2)
Error in UseMethod("xml_find_all") : 
  no applicable method for 'xml_find_all' applied to an object of class "xml_document"
Calls: search_goodreads ... html_elements -> html_elements.default -> <Anonymous>
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpvY9k4K/file17c3ca52f67c16/accountPicker.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpgC0Xq4/Rf178f9b67fbc596': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Mark Edmondson <r@sunholo.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running massageExamples to create ‘googleCloudStorageR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpfULvYO/file1794a83650cf91/gcs_get_object.R': No space left on device
Execution halted
 NONE
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Daniel Schmeh <danielschmeh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Schmeh",
                    role = c("aut", "cre"),
                    email = "danielschmeh@gmail.com")
as necessary.
Maintainer: ‘George Vega Yon <g.vegayon@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: publicdata.google.com
    From: man/dspl.Rd
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘gtm_accounts_get.Rd’, ‘gtm_accounts_list.Rd’, ‘gtm_builtin_delete.Rd’, ‘gtm_builtin_list.Rd’, ‘gtm_builtin_revert.Rd’, ‘gtm_containers_create.Rd’, ‘gtm_containers_delete.Rd’, ‘gtm_containers_get.Rd’, ‘gtm_containers_list.Rd’, ‘gtm_containers_update.Rd’, ‘gtm_environments_create.Rd’, ‘gtm_environments_delete.Rd’, ‘gtm_zones_list.Rd’, ‘gtm_zones_revert.Rd’, ‘gtm_zones_update.Rd’, ‘variables_list.Rd’
Maintainer: ‘Markus Gesmann <markus.gesmann@googlemail.com>’

Reading Rd files failed with message:
  cannot open the connection
checkRd: (-1) google_find_place.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_find_place.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_find_place.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_map.Rd:54: Lost braces; missing escapes or markup?
    54 | of `{sf}` objects).}
       |     ^
Running massageExamples to create ‘googleway-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp8L51TN/file17cf5556a2e48b/map_styles.R': No space left on device
Execution halted
 NONE
Running ‘manual_tests.R’ [0s/0s]
  Running ‘testthat.R’ [7s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(googleway)
  > 
  > test_check("googleway")
  Saving _problems/test-google_map_layers-28.R
  [ FAIL 1 | WARN 2 | SKIP 7 | PASS 559 ]
  
  ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
  • call to api (1): 'test-google_directions.R:185:3'
  • empty test (1): 'test-legend.R:4:1'
  • incorrect error string in match.arg (3): 'test-google-package.R:13:3',
    'test-google-package.R:36:3', 'test-google_directions.R:15:3'
  • request to api (1): 'test-google_directions.R:212:3'
  • requires connection (1): 'test-google_map.R:64:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-google_map_layers.R:28:3'): markers correctly defined ──────────
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─testthat::expect_silent(add_markers(map = m, data = df, colour = "colour")) at test-google_map_layers.R:28:3
   2.   └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   3.     └─testthat (local) .capture(...)
   4.       └─withr::with_output_sink(...)
   5.         └─withr:::set_output_sink(file = new, append = append, split = split)
   6.           └─withr:::output_sink(file = file, append = append, split = split)
   7.             └─base::sink(file = file, append = append, type = "output", split = split)
   8.               └─base::file(file, if (append) "a" else "w")
  
  [ FAIL 1 | WARN 2 | SKIP 7 | PASS 559 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Wencke Walter <wencke.walter@arcor.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘GORCure-package.Rd’:
    \keyword{ package, linear transformation model, mi [TRUNCATED]
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpl8cJp8/file178fbb6f759344/timer_enable.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yuichiro Otani <yuichiro@otani.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuichiro",
                    family = "Otani",
                    role = c("aut", "cre"),
                    email = "yuichiro@otani.co")
as necessary.

The Description field contains
  (http://statdb.nstac.go.jp/)
Please enclose URLs in angle brackets (<...>).
Malformed Description field: should contain one or more complete sentences.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSJ4vwv/file178f957d2b1546/get.stat.list.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmppXsgUn/ltx1794d534899ddf/govStatJPN-package.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘StatMatch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mice', 'missMDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘VariantAnnotation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Evandro Konzen <gpfda.r@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jian", "Qing"),
                      family = "Shi",
                      role = "aut"),
               person(given = "Yafeng",
                      family = "Cheng",
                      role = "aut"),
               person(given = "Evandro",
                      family = "Konzen",
                      role = c("aut", "cre"),
                      email = "gpfda.r@gmail.com"))
as necessary.
Packages required but not available: 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.
Maintainer: ‘Xiang Li <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiang",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "ynaulx@gmail.com")
as necessary.
Maintainer: ‘Marlene Mueller <marlene.mueller@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Mueller",
                    role = c("aut", "cre"),
                    email = "marlene.mueller@gmx.de")
as necessary.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘heatmap.2.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'colorspace''
Failed with error:  'there is no package called 'colorspace''

Quitting from heatmap.2.Rmd:331-339 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'heatmaply'
---
Backtrace:
    ▆
 1. └─base::library(heatmaply)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'heatmap.2.Rmd' failed with diagnostics:
there is no package called 'heatmaply'
--- failed re-building ‘heatmap.2.Rmd’

--- re-building ‘venn.Rmd’ using rmarkdown
--- finished re-building ‘venn.Rmd’

SUMMARY: processing the following file failed:
  ‘heatmap.2.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Cyprien Mbogning <cyprien.mbogning@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cyprien",
                      family = "Mbogning",
                      role = c("aut", "cre"),
                      email = "cyprien.mbogning@inserm.fr"),
               person(given = "Wilson",
                      family = "Toussile",
                      role = "aut"))
as necessary.
Maintainer: ‘Ali Ghanbari <a.ghanbari541@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Parinaz",
                      family = "Mehdipour",
                      role = "aut",
                      email = "mehdipoor.p@gmail.com"),
               person(given = "Ali",
                      family = "Ghanbari",
                      role = c("cre", "aut"),
                      email = "a.ghanbari541@gmail.com"),
               person(given = "Iman",
                      family = "Navidi",
                      role = "aut",
                      email = "iman.navidi.1988@gmail.com"),
               person(given = "Farshad",
                      family = "Farzadfar",
                      role = "cph",
                      email = "farzadfar3@yahoo.com"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ivan Kuzmin <ivan.kuzmin@ut.ee>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juri",
                      family = "Reimand",
                      role = "aut",
                      email = "juri.reimand@ut.ee"),
               person(given = "Raivo",
                      family = "Kolde",
                      role = "aut",
                      email = "rkolde@gmail.com"),
               person(given = "Tambet",
                      family = "Arak",
                      role = "aut",
                      email = "tambet.arak@gmail.com"),
               person(given = "Ivan",
                      family = "Kuzmin",
                      role = "cre",
                      email = "ivan.kuzmin@ut.ee"))
as necessary.
Package required but not available: ‘nbpMatching’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zheyuan Li <zheyuan.li@bath.edu>’

The Description field contains
  difference penalty, proposed by Li and Cao (2022) <arXiv:2201.06808>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Package required but not available: ‘riskRegression’

Package suggested but not available for checking: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Hannah O. Ajoge <ohuajo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hannah", "O."),
                    family = "Ajoge",
                    role = c("aut", "cre"),
                    email = "ohuajo@gmail.com")
as necessary.
Maintainer: ‘Sen Zhao <sen-zhao@sen-zhao.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sen",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "sen-zhao@sen-zhao.com")
as necessary.
Maintainer: ‘Leif Johnson <leif.t.johnson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Leif",
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "leif.t.johnson@gmail.com")
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) grade-package.Rd:51-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:58-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:72-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:79-81: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Brendan Matthew Galdo <Brendan.m.galdo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/bmgaldo/graDiEnt
which should likely be
  https://github.com/bmgaldo/graDiEnt/issues
instead.
Packages required but not available: 'car', 'Hmisc'

Package suggested but not available for checking: ‘pbkrtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Note: skipping ‘MPG_algorithm.Rmd’ due to unavailable dependencies:
  'DiagrammeR'
Maintainer: ‘Farzad Noorian <farzad.noorian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Farzad",
                      family = "Noorian",
                      role = c("aut", "cre"),
                      email = "farzad.noorian@gmail.com"),
               person(given = c("Anthony", "Mihirana"),
                      family = "de Silva",
                      role = "aut"))
as necessary.
Maintainer: ‘Iago Giné-Vázquez <iago.gin-vaz@protonmail.com>’

The Description field contains
  <arXiv:2106.14875> [math.NA] 28 Jun 2021, by Irfan Muhammad [School of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'randnet', 'HCD'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpbclfvi/file193f384cf1efaf': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpbclfvi/file193f384cf1efaf': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Matteo Farne' <matteo.farne2@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matteo",
                      family = "Farne'",
                      role = c("aut", "cre"),
                      email = "matteo.farne2@unibo.it"),
               person(given = "Angela",
                      family = "Montanari",
                      role = "aut",
                      email = "angela.montanari@unibo.it"))
as necessary.

The Description field contains
  Farne' and Montanari, 2018 <arXiv:1803.00374>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) Granger.inference.difference.Rd:65: Lost braces; missing escapes or markup?
    65 |         least one root larger than one) on bootstrapped \verb{x} and {y}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:68: Lost braces; missing escapes or markup?
    68 |         least one root larger than one) on bootstrapped \verb{x} and {z}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:71: Lost braces; missing escapes or markup?
    71 |         least one root larger than one) on bootstrapped \verb{x}, \verb{y} and {z}.
       |                                                                                ^
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pratheesh P. Gopinath <grapescoa@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'ggpubr', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘grapes-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Maintainer: ‘Paul Savary <psavary@protonmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘spatstat.linnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tabea Rebafka <tabea.rebafka@sorbonne-universite.fr>’

The Description field contains
  algorithm" by T. Rebafka (2022) <arXiv:2211.02314>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Maxime HERVE <maxime.herve@univ-rennes1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maxime",
                    family = "HERVE",
                    role = c("aut", "cre"),
                    email = "maxime.herve@univ-rennes1.fr")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Package required but not available: ‘nbpMatching’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gratis.Rcheck/00install.out’ for details.
Maintainer: ‘C. Cronkite-Ratcliff <ccronkite-ratcliff@usgs.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpXwgEWV/libloc_196_c7f545fb47316a4e.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "David",
                      family = "Azriel",
                      role = "aut"),
               person(given = c("Abba", "Krieger", "see", "COPYRIGHTS", "file", "for", "the", "authors", "of", "the", "java"),
                      family = "libraries",
                      role = "aut"))
as necessary.
Package required but not available: ‘nbpMatching’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggspatial', 'plotly', 'sfnetworks'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/greenSD.Rcheck/00install.out’ for details.
Packages required but not available: 'Gmisc', 'Hmisc', 'rms'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiaoping Shi <xiaoping.shi@ubc.ca>’

The Description field contains
  <arXiv:2107.00728>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sophie Donnet <sophie.donnet@inrae.fr>’

The Description field contains
  Bar-hen, Barbillon and Donnet (2020) <arXiv:1807.10138>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) GREMLINS.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:23: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Frank E Harrell Jr <fh@fharrell.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frank", "E"),
                    family = "Harrell Jr",
                    role = c("aut", "cre"),
                    email = "fh@fharrell.com")
as necessary.
Packages required but not available: 'Hmisc', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Buch <davidbuch42@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sagiru Mati <smati@smati.com.ng>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpjT683u/ltx193b0a2a7de5b6/implant.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYHI0KM/file18f1063cbf21fa/causal_forest.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprD5d9u/file18314349cb145b/gridOMI.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Paul Murrell <p.murrell@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Murrell",
                      role = c("aut", "cre"),
                      email = "p.murrell@auckland.ac.nz"),
               person(given = "Velvet",
                      family = "Ly.",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting-started.Rmd’ using rmarkdown
Warning in dev.off(dv) : agg could not write to the given file
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmpr9UNgv/Rf18eb6645fb4f7f': No space left on device
Warning in dev.off(dv) : agg could not write to the given file

Quitting from getting-started.Rmd:179-181 [fonts-list]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from getting-started.Rmd:179-181 [fonts-list]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘getting-started.Rmd’

--- re-building ‘ggplot2-integration.Rmd’ using rmarkdown
--- finished re-building ‘ggplot2-integration.Rmd’

SUMMARY: processing the following file failed:
  ‘getting-started.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Mark Heckmann <heckmann.mark@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ryan Angi <angi.ryan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ryan",
                    family = "Angi",
                    role = c("aut", "cre"),
                    email = "angi.ryan@gmail.com")
as necessary.
Maintainer: ‘Pierre-Olivier Chasset <pierre-olivier@chasset.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pierre-Olivier",
                    family = "Chasset",
                    role = c("aut", "cre"),
                    email = "pierre-olivier@chasset.net")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘grnn-package.Rd’:
    \keyword{network,}
Maintainer: ‘Nelson Nazzicari <nelson.nazzicari@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nelson", "Nazzicari", "&", "Filippo"),
                      family = "Biscarini",
                      role = "aut"),
               person(given = "Nelson",
                      family = "Nazzicari",
                      role = "cre",
                      email = "nelson.nazzicari@gmail.com"))
as necessary.
Maintainer: ‘Zeynel Cebeci <zcebeci@cu.edu.tr>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Aaron England <aaron.england24@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "England",
                    role = c("aut", "cre"),
                    email = "aaron.england24@gmail.com")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rearrr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Sibley <dcibioinformatics@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiaxing",
                      family = "Lin",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Sibley",
                      role = c("aut", "cre"),
                      email = "dcibioinformatics@duke.edu"),
               person(given = "Tracy",
                      family = "Truong",
                      role = "aut"),
               person(given = "Kouros",
                      family = "Owzar",
                      role = "aut"),
               person(given = "Zhiguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Layne",
                      family = "Rogers",
                      role = "ctb"),
               person(given = "Yu",
                      family = "Jiang",
                      role = "ctb"),
               person(given = "Janice",
                      family = "McCarthy",
                      role = "ctb"),
               person(given = "Andrew",
                      family = "Allen",
                      role = "ctb"))
as necessary.
Maintainer: ‘Zhigen Zhao <zhaozhg@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhigen",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "zhaozhg@temple.edu")
as necessary.
Maintainer: ‘Matthew Carli <carlimm@mymail.vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Wheeler",
                      role = "aut"),
               person(given = "Matthew",
                      family = "Carli",
                      role = c("aut", "cre"),
                      email = "carlimm@mymail.vcu.edu"))
as necessary.
Maintainer: ‘Li Ma <li.ma@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacopo",
                      family = "Soriano",
                      role = "aut"),
               person(given = "Li",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "li.ma@duke.edu"))
as necessary.

The Description field contains
  <arXiv:1602.03990v2 [stat.ME]>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘labelled’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Rodriguez <daniel.rodriguez.perez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Rodriguez",
                    role = c("aut", "cre"),
                    email = "daniel.rodriguez.perez@gmail.com")
as necessary.
Maintainer: ‘Ian W. McKeague <im2131@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Lopez-Pintado",
                      role = "aut"),
               person(given = c("Ian", "W."),
                      family = "McKeague",
                      role = c("aut", "cre"),
                      email = "im2131@columbia.edu"))
as necessary.
Maintainer: ‘Xuan Dang <xuandang11289@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuan",
                    family = "Dang",
                    role = c("aut", "cre"),
                    email = "xuandang11289@gmail.com")
as necessary.
Maintainer: ‘Lukas Meier <meier@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukas",
                    family = "Meier",
                    role = c("aut", "cre"),
                    email = "meier@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andy Wills <andy@willslab.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kazunaga",
                      family = "Matsuki",
                      role = "aut"),
               person(given = "Andy",
                      family = "Wills",
                      role = "cre",
                      email = "andy@willslab.co.uk"))
as necessary.
checkRd: (-1) qdb.p.correct.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{refpts}{a numeric vector used as a reference point to determine the correct side of the \code{qdb} for classifying \code{x}. The \code{length(refpts)} should be equal to {ncol(x)}. Default to \code{colMeans(x)}. }
       |                                                                                                                                                                                 ^
Maintainer: ‘Louis Bergelson <louisb@broadinstitute.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kiran",
                      family = "Garimella",
                      role = "aut"),
               person(given = "Louis",
                      family = "Bergelson",
                      role = "cre",
                      email = "louisb@broadinstitute.org"))
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stat.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brad",
                      family = "Efron",
                      role = "aut"),
               person(given = "R.",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stat.stanford.edu"))
as necessary.
Maintainer: ‘Olivier Briet <o.briet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olivier",
                    family = "Briet",
                    role = c("aut", "cre"),
                    email = "o.briet@gmail.com")
as necessary.
Maintainer: ‘Solenne Gaucher <solenne.gaucher@math.u-psud.fr>’

The Description field contains
  as describes in Gaucher, Klopp and Robin (2019) <arXiv:1911.13122>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) crossval.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Tobias Mütze <tobias.muetze@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘about-createGSP.Rmd’ using rmarkdown
--- finished re-building ‘about-createGSP.Rmd’

--- re-building ‘gscramble-tutorial.Rmd’ using rmarkdown

Quitting from gscramble-tutorial.Rmd:24-27 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gscramble-tutorial.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘gscramble-tutorial.Rmd’

--- re-building ‘permutation-options.Rmd’ using rmarkdown

Quitting from permutation-options.Rmd:32-255 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'permutation-options.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘permutation-options.Rmd’

SUMMARY: processing the following files failed:
  ‘gscramble-tutorial.Rmd’ ‘permutation-options.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Xueyuan Cao <xcao12@uthsc.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘gsda.Rd’:
    \keyword{association;}
    \keyword{enrichment;}
Package required but not available: ‘msigdbr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gsDesign2.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gsDesignNB.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gsDesignTune.Rcheck/00install.out’ for details.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpZnDTGw/Rf194fda3dff7976': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpTHUyL7/file19578638cdc5ab/simdataExtract.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Marie-Karelle Riviere <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marie-Karelle",
                    family = "Riviere",
                    role = c("aut", "cre"),
                    email = "eldamjh@gmail.com")
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"),
               person(given = "Lynna",
                      family = "Chu",
                      role = "aut"),
               person(given = "Hoseung",
                      family = "Song",
                      role = "aut"))
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [16s/20s] OK
Maintainer: ‘Sayanti Guha Majumdar <sayanti23gm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sayanti", "Guha"),
                      family = "Majumdar",
                      role = c("aut", "cre"),
                      email = "sayanti23gm@gmail.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"))
as necessary.
Package required but not available: ‘GSVA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp1FXKjS/Rf18f8121239ea76': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
cannot open the connection
problem found in ‘deviance.gsl_nls.Rd’
Maintainer: ‘Ben Marwick <benmarwick@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/benmarwick/gsloid
which should likely be
  https://github.com/benmarwick/gsloid/issues
instead.
checkRd: (-1) lisiecki2005.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:29: Lost braces in \itemize; meant \describe ?
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpOJiSLX/ltx193bb45cbec6f8/Multimin.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gsMeanFreq.Rcheck/00install.out’ for details.
Maintainer: ‘Sergio Venturini <sergio.venturini@unibocconi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "sergio.venturini@unibocconi.it")
as necessary.
Maintainer: ‘Zhenyu Jia <ajia.ucr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhenyu",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "ajia.ucr@gmail.com")
as necessary.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yifei Zhang <yz3925@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yifei",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "yz3925@columbia.edu"),
               person(given = "Xuan",
                      family = "Bi",
                      role = "aut"))
as necessary.
Maintainer: ‘Baosheng Liang <liangbsunc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Baosheng",
                      family = "Liang",
                      role = c("aut", "cre"),
                      email = "liangbsunc@gmail.com"),
               person(given = "Yuanjia",
                      family = "Wang",
                      role = "aut"),
               person(given = "Donglin",
                      family = "Zeng",
                      role = "aut"))
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = "Lynna",
                      family = "Chu",
                      role = "aut"))
as necessary.

The Description field contains
  high-dimensional and non-Euclidean data <arXiv:1810.05973>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘G. Grothendieck <ggrothendieck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Grothendieck",
                    role = c("aut", "cre"),
                    email = "ggrothendieck@gmail.com")
as necessary.
Running massageExamples to create ‘gsw-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpOnxQMI/file195a5e64ee3f9b/gsw_chem_potential_water_ice.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘gsw.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpsUnSoS/Rf196408753b4597': No space left on device

Quitting from gsw.Rmd:67-69 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from gsw.Rmd:67-69 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gsw.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘gsw.Rmd’

SUMMARY: processing the following file failed:
  ‘gsw.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..........Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpC0XN6o/file1966874f9838ca': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpC0XN6o/file1966874f9838ca': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘fect’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘HARplus’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) artset1987.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:12: Lost braces in \itemize; meant \describe ?
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘gte-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpoYHzKt/file196e74106cb1cb', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpoYHzKt/file196e74106cb1cb/gte.R': No such file or directory
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  data.  Song, H. and Chen, H. (2022) <arXiv:2205.13787>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = "Jingru",
                      family = "Zhang",
                      role = "aut"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘last_row_id.Rd’, ‘n_decimals.Rd’, ‘pad_fn.Rd’, ‘plot_data.Rd’
Maintainer: ‘Flavio Poletti <flavio.poletti@hotmail.ch>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Daniel Herszenhut <dhersz@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Running examples in ‘gtfstools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as_dt_gtfs
> ### Title: Coerce lists and GTFS objects from other packages into
> ###   gtfstools-compatible GTFS objects
> ### Aliases: as_dt_gtfs as_dt_gtfs.tidygtfs as_dt_gtfs.gtfs as_dt_gtfs.list
> 
> ### ** Examples
> 
> data_path <- system.file("extdata/spo_gtfs.zip", package = "gtfstools")
> 
> gtfsio_gtfs <- gtfsio::import_gtfs(data_path)
Warning in normalizePath(exdir) :
  path[1]="/tmp/RtmpptHygs/gtfsio": No such file or directory

 *** caught segfault ***
address 0x1e0, cause 'memory not mapped'

Traceback:
 1: zip::unzip(path, files = filenames_to_read, exdir = tmpdir, overwrite = TRUE)
 2: gtfsio::import_gtfs(data_path)
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'gtsummary', 'risks', 'broom.helpers', 'officer', 'flextable'

Package suggested but not available for checking: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpDeziuy/Rf19510473ace5f0': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gfrance85.Rd’
Running examples in ‘Guerry-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Guerry
> ### Title: Data from A.-M. Guerry, "Essay on the Moral Statistics of
> ###   France"
> ### Aliases: Guerry
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(car)
Error in library(car) : there is no package called ‘car’
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘MultiSpat.Rmd’ using rmarkdown

Quitting from MultiSpat.Rmd:40-47 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'adespatial'
---
Backtrace:
    ▆
 1. └─base::library(adespatial)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MultiSpat.Rmd' failed with diagnostics:
there is no package called 'adespatial'
--- failed re-building ‘MultiSpat.Rmd’

--- re-building ‘guerry-multivariate.Rmd’ using rmarkdown

Quitting from guerry-multivariate.Rmd:51-63 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'car'
---
Backtrace:
    ▆
 1. └─base::library(car)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'guerry-multivariate.Rmd' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘guerry-multivariate.Rmd’

SUMMARY: processing the following files failed:
  ‘MultiSpat.Rmd’ ‘guerry-multivariate.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpnM8hmw/file196616fc27c80/lca_se.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘GGally’

Package suggested but not available for checking: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘labelled’

Packages suggested but not available for checking:
  'broom.helpers', 'FactoMineR', 'gtsummary'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) guild_merge.Rd:38: Lost braces; missing escapes or markup?
    38 |     \item{\code{summary_name}}{Name used for the run summary. Use '${run_id}' in the name to include the run ID.}
       |                                                                     ^
checkRd: (-1) guild_merge_cli.Rd:88: Lost braces; missing escapes or markup?
    88 | \item{summary_name}{Name used for the run summary. Use '${run_id}' in the name to include the run ID.}
       |                                                          ^
Maintainer: ‘Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ricardo",
                    family = "Wurmus",
                    role = c("aut", "cre"),
                    email = "ricardo.wurmus@mdc-berlin.de")
as necessary.
cannot open the connection
cannot open the connection
problems found in ‘guix.install-package.Rd’, ‘guix.install.Rd’
Maintainer: ‘Chris Muir <cdmuir@hawaii.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ho Tsung-wu <tsungwu@ntnu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ho",
                    family = "Tsung-wu",
                    role = c("aut", "cre"),
                    email = "tsungwu@ntnu.edu.tw")
as necessary.
Package required but not available: ‘eda4treeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Elizabeth Slate <slate@stat.fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Edsel", "A."),
                      family = "Pena",
                      role = "aut",
                      email = "pena@stat.sc.edu"),
               person(given = c("Elizabeth", "H."),
                      family = "Slate",
                      role = "aut",
                      email = "eslate@fsu.edu"),
               person(given = "Elizabeth",
                      family = "Slate",
                      role = "cre",
                      email = "slate@stat.fsu.edu"))
as necessary.
Maintainer: ‘Li Xing <sfulxing@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Xu",
                      role = "aut"),
               person(given = "Li",
                      family = "Xing",
                      role = c("aut", "cre"),
                      email = "sfulxing@gmail.com"),
               person(given = "Jessica",
                      family = "Su",
                      role = "aut"),
               person(given = "Xuekui",
                      family = "Zhang",
                      role = "aut",
                      email = "UBC.X.Zhang@gmail.com"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "aut",
                      email = "Weiliang.Qiu@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) esSim.Rd:81: Lost braces; missing escapes or markup?
    81 | \eqn{83} SNPs are in cluster {-}, \eqn{714} SNPs are in cluster \eqn{0},
       |                              ^
checkRd: (-1) esSimDiffPriors.Rd:91: Lost braces; missing escapes or markup?
    91 | \eqn{64} SNPs are in cluster {-}, \eqn{708} SNPs are in cluster \eqn{0},
       |                              ^
Maintainer: ‘Stephanie Gogarten <sdmorris@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ian",
                      family = "Painter",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Washington",
                      role = "aut"),
               person(given = "Stephanie",
                      family = "Gogarten",
                      role = "cre",
                      email = "sdmorris@uw.edu"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aboubacar Y. Touré <aboubacaryacoubatoure.ussgb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aboubacar", "Y."),
                      family = "Touré",
                      role = c("aut", "cre"),
                      email = "aboubacaryacoubatoure.ussgb@gmail.com"),
               person(given = c("Célestin", "C."),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.
Maintainer: ‘Daisuke Yoneoka <blue.sky.sea.dy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daisuke",
                      family = "Yoneoka",
                      role = c("aut", "cre"),
                      email = "blue.sky.sea.dy@gmail.com"),
               person(given = "Eiko",
                      family = "Saito",
                      role = "aut"))
as necessary.
Maintainer: ‘Joseph Emile Honour Percival <ipercival@gmail.com>’

The Description field contains
  (Percival et al., 2021)<arXiv:2101.03491>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Wheeler <dcwheels@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Wheeler",
                    role = c("aut", "cre"),
                    email = "dcwheels@gmail.com")
as necessary.
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hyungsuk",
                    family = "Tak",
                    role = c("aut", "cre"),
                    email = "hyungsuk.tak@gmail.com")
as necessary.
Packages required but not available:
  'spatialsample', 'recipes', 'rsample', 'tune', 'workflows',
  'ecospat', 'stacks'

Packages suggested but not available for checking:
  'paisaje', 'themis', 'spocc', 'tidymodels', 'workflowsets',
  'parsnip', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel P. Smith <dansmith01@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘David Sjoberg <dav.sjob@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Sjoberg",
                    role = c("aut", "cre"),
                    email = "dav.sjob@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘convert.Rmd’ using rmarkdown
--- finished re-building ‘convert.Rmd’

--- re-building ‘hablar.Rmd’ using rmarkdown
--- finished re-building ‘hablar.Rmd’

--- re-building ‘retype.Rmd’ using rmarkdown

Quitting from retype.Rmd:11-19 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'DiagrammeR'
---
Backtrace:
    ▆
 1. └─base::library(DiagrammeR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'retype.Rmd' failed with diagnostics:
there is no package called 'DiagrammeR'
--- failed re-building ‘retype.Rmd’

--- re-building ‘s.Rmd’ using rmarkdown
--- finished re-building ‘s.Rmd’

SUMMARY: processing the following file failed:
  ‘retype.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Bayes.Rmd’ using rmarkdown
--- finished re-building ‘Bayes.Rmd’

--- re-building ‘control.Rmd’ using rmarkdown
--- finished re-building ‘control.Rmd’

--- re-building ‘decide.Rmd’ using rmarkdown
--- finished re-building ‘decide.Rmd’

--- re-building ‘ham-package.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpNajKrY/Rf1a34e55bfcd2e5': No space left on device

Quitting from ham-package.Rmd:118-122 [plotGroup2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from ham-package.Rmd:118-122 [plotGroup2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ham-package.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘ham-package.Rmd’

SUMMARY: processing the following file failed:
  ‘ham-package.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'handwriter', 'handwriterRF'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mc2d’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stephanie Reinders <reinders.stephanie@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘handwriter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jonathan Schwartz <jzs1986@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Schwartz",
                    role = c("aut", "cre"),
                    email = "jzs1986@gmail.com")
as necessary.
Maintainer: ‘Konrad Krahl <Beratung@Hanseatic-Statistics.de>’

The BugReports field in DESCRIPTION has
  https://github.com/KonradKrahl/HanStat
which should likely be
  https://github.com/KonradKrahl/HanStat/issues
instead.
Packages required but not available: 'car', 'olsrr', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘K. Burkett <kburkett@uottawa.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "K.",
                      family = "Burkett",
                      role = c("aut", "cre"),
                      email = "kburkett@uottawa.ca"),
               person(given = "B.",
                      family = "McNeney",
                      role = "aut",
                      email = "mcneney@sfu.ca"),
               person(given = "J.",
                      family = "Graham",
                      role = "aut",
                      email = "jgraham@stat.sfu.ca"),
               person(given = c("with", "code", "for", "case-control", "data", "contributed", "by", "Zhijian"),
                      family = "Chen",
                      role = "aut",
                      email = "z11chen@math.uwaterloo.ca"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ruidong Li <rli012@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruidong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "rli012@ucr.edu"),
               person(given = "Han",
                      family = "Qu",
                      role = "aut"),
               person(given = "Jinfeng",
                      family = "Chen",
                      role = "aut"),
               person(given = "Shibo",
                      family = "Wang",
                      role = "aut"),
               person(family = "Le Zhang",
                      role = "aut"),
               person(given = "Julong",
                      family = "Wei",
                      role = "aut"),
               person(given = c("Sergio", "Pietro"),
                      family = "Ferrante",
                      role = "aut"),
               person(given = c("Mikeal", "L."),
                      family = "Roose",
                      role = "aut"),
               person(given = "Zhenyu",
                      family = "Jia",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Simondi",
                      role = "aut",
                      email = "sebastian.simondi@gmail.com"),
               person(given = "Gaston",
                      family = "Quero",
                      role = c("aut", "cre"),
                      email = "gastonquero@gmail.com"),
               person(given = c("with", "contributions", "from", "Victoria"),
                      family = "Bonnecarrere",
                      role = "aut"),
               person(given = "Lucia",
                      family = "Gutierrez",
                      role = "aut"))
as necessary.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tspredit', 'daltoolbox'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Wilson <hmp.R.package@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J."),
                      family = "Wilson",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Wilson",
                      role = "cre",
                      email = "hmp.R.package@gmail.com"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Seurat.Rmd’ using rmarkdown

Quitting from Seurat.Rmd:19-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Seurat'
---
Backtrace:
    ▆
 1. └─base::library(Seurat)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Seurat.Rmd' failed with diagnostics:
there is no package called 'Seurat'
--- failed re-building ‘Seurat.Rmd’

--- re-building ‘detailedWalkthrough.Rmd’ using rmarkdown

Quitting from detailedWalkthrough.Rmd:26-106 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'detailedWalkthrough.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘detailedWalkthrough.Rmd’

--- re-building ‘quickstart.Rmd’ using rmarkdown
--- finished re-building ‘quickstart.Rmd’

SUMMARY: processing the following files failed:
  ‘Seurat.Rmd’ ‘detailedWalkthrough.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bingyuan Liu <adler1016@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bingyuan", "Liu/Yan", "Yuan/Qian"),
                      family = "Shi",
                      role = "aut"),
               person(given = "Bingyuan",
                      family = "Liu",
                      role = "cre",
                      email = "adler1016@gmail.com"))
as necessary.

The Description field contains
  to http://www.stat.ubc.ca/Research/TechReports/techreports/220.pdf for
Please enclose URLs in angle brackets (<...>).
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/haven.Rcheck/00install.out’ for details.
Maintainer: ‘Felix Cheysson <felix@cheysson.fr>’

The Description field contains
  <arXiv:2003.04314>. Some general use functions for Hawkes processes are
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Riadh Zaatour <zaatour_riadh@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riadh",
                    family = "Zaatour",
                    role = c("aut", "cre"),
                    email = "zaatour_riadh@yahoo.fr")
as necessary.
Maintainer: ‘Denise Rava <drava@ucsd.edu>’

The Description field contains
  R. (2021) <arXiv:2112.09535>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bijan",
                    family = "Seyednasrollah",
                    role = c("aut", "cre"),
                    email = "bijan.s.nasr@gmail.com")
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
checkRd: (-1) deff.sigma.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:35: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Mike Pratte <prattems@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "S."),
                      family = "Pratte",
                      role = "aut"),
               person(given = "Mike",
                      family = "Pratte",
                      role = "cre",
                      email = "prattems@gmail.com"))
as necessary.
Packages required but not available: 'brms', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alberto Lopez Moreno <bertolomo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pilar",
                      family = "Munyoz",
                      role = "aut"),
               person(given = c("Alberto", "Lopez"),
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "bertolomo@gmail.com"))
as necessary.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tianxi Li <tianxili@umn.edu>’

The Description field contains
  <arXiv:1810.01509>. The package also includes a data generating
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘randnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘H. Battey <h.battey@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("H.", "H."),
                      family = "Hoeltgebaum",
                      role = "aut"),
               person(given = "H.",
                      family = "Battey",
                      role = "cre",
                      email = "h.battey@imperial.ac.uk"))
as necessary.
Maintainer: ‘Jie Qiao <qiaojie.chn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘gtsummary’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'mixlm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gero",
                    family = "Szepannek",
                    role = c("aut", "cre"),
                    email = "gero.szepannek@web.de")
as necessary.
Maintainer: ‘Blanca Monroy-Castillo Developer <blancamonroy.96@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: 1508.00947
    From: inst/doc/HDBRR.pdf
checkRd: (-1) phenowheat.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) phenowheat.Rd:19: Lost braces in \enumerate; meant \describe ?
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Natasha Stewart <natashastewart@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Okamoto",
                      role = "aut"),
               person(given = "Natasha",
                      family = "Stewart",
                      role = c("aut", "cre"),
                      email = "natashastewart@utexas.edu"),
               person(given = c("Dr.", "Jun"),
                      family = "Li",
                      role = "aut"))
as necessary.
Packages required but not available: 'flexsurv', 'flexsurvcure', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ftsa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bin Guo <guobinscu@scu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bin",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "guobinscu@scu.edu.cn")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Getting-Started.Rmd’ using rmarkdown

Quitting from Getting-Started.Rmd:49-52 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Getting-Started.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘Getting-Started.Rmd’

--- re-building ‘MAD-Evaluation.Rmd’ using rmarkdown

Quitting from MAD-Evaluation.Rmd:40-43 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MAD-Evaluation.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘MAD-Evaluation.Rmd’

--- re-building ‘NA-Checking.Rmd’ using rmarkdown

Quitting from NA-Checking.Rmd:46-49 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'NA-Checking.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘NA-Checking.Rmd’

SUMMARY: processing the following files failed:
  ‘Getting-Started.Rmd’ ‘MAD-Evaluation.Rmd’ ‘NA-Checking.Rmd’

Error: Vignette re-building failed.
Execution halted
Running massageExamples to create ‘hdiVAR-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Error: inferior call failed
Execution halted
Maintainer: ‘Ran Zhao <Zhaoran@mail.sdu.edu.cn>’

The Description field contains
  al. (2023) <arXiv:2306.03317>. In this package, we also provide the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Martin Spindler <martin.spindler@gmx.de>’

The Description field contains
  (2016) <arXiv:1603.01700>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rounak Dey <deyrnk@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rounak",
                      family = "Dey",
                      role = c("aut", "cre"),
                      email = "deyrnk@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggpubr', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘C. Jason Liang <liangcj@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘finda.Rd’:
    https://doi.org/10.1111/1467-9469.00320
    https://doi.org/10.1198/016214504000000845
  File ‘hds.Rd’:
    https://doi.org/10.1111/biom.12628
  File ‘hdslc.Rd’:
    https://doi.org/10.1111/biom.12628
    https://doi.org/10.1111/1467-9469.00320
    https://doi.org/10.1198/016214504000000845
Re-building vignettes had CPU time 2.6 times elapsed time
Maintainer: ‘Wei Qian <weiqian@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Qian",
                      role = c("aut", "cre"),
                      email = "weiqian@stat.umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = "aut",
                      email = "yiyang@umn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Maintainer: ‘Pankaj Das <pankaj.das2@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pankaj",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "pankaj.das2@icar.gov.in",
                    comment = c(ORCID = "0000-0003-1672-2502"))
as necessary.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpsUZ1vX/file1d0c481b0015b3': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpsUZ1vX/file1d0c481b0015b3': No such file or directory
Error in file(con, "r") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘healthmotionR_vignette.Rmd’ using rmarkdown

Quitting from healthmotionR_vignette.Rmd:63-79 [bodymetrics-plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/RtmpDpvrtV/file1ac06528fb16d1'
---
Backtrace:
    ▆
 1. ├─base::withVisible(knit_print(x, ...))
 2. ├─knitr::knit_print(x, ...)
 3. └─knitr:::knit_print.default(x, ...)
 4.   └─knitr::normal_print(x)
 5.     ├─base::print(x)
 6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
 7.       └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'healthmotionR_vignette.Rmd' failed with diagnostics:
could not open file '/tmp/RtmpDpvrtV/file1ac06528fb16d1'
--- failed re-building ‘healthmotionR_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘healthmotionR_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available:
  'recipes', 'parsnip', 'tune', 'workflows', 'modeltime'

Packages suggested but not available for checking:
  'healthyR.data', 'janitor', 'timetk', 'plotly', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##stable
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##experimental
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Packages required but not available: 'timetk', 'plotly'

Package suggested but not available for checking: ‘healthyR.data’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'timetk', 'plotly', 'recipes', 'modeltime', 'parsnip', 'workflowsets'

Packages suggested but not available for checking:
  'rsample', 'healthyR.ai', 'tidymodels', 'tune', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
problems found in ‘get_and_save.Rd’, ‘pipe.Rd’
Maintainer: ‘Kerry Atkins <atkins.kerry04@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kerry",
                    family = "Atkins",
                    role = c("aut", "cre"),
                    email = "atkins.kerry04@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘heatex-package.Rd’:
    \keyword{Heat exchange,heat transfer}
Malformed Title field: should not end in a period.
Maintainer: ‘Shilin Zhao <shilin.zhao@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shilin",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "shilin.zhao@vanderbilt.edu"),
               person(given = "Linlin",
                      family = "Yin",
                      role = "aut"),
               person(given = "Yan",
                      family = "Guo",
                      role = "aut"),
               person(given = "Quanhu",
                      family = "Sheng",
                      role = "aut"),
               person(given = "Yu",
                      family = "Shyr",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sampleSelection’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.heckmange.R’
File ‘heck/libs/heck.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJTDRde/file1b0f26316a167c/define_psa.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'caret', 'daltoolbox', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Raoul Wadhwa <raoulwadhwa@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Geenens and Lafaye De Micheaux (2019) <arXiv:1810.10276v4>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Meissner <retep.meissner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Meissner",
                    role = c("aut", "cre"),
                    email = "retep.meissner@gmail.com")
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Juuso Parkkinen <juuso.parkkinen@iki.fi>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘autothresholdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggalluvial', 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Packages suggested but not available for checking: 'candisc', 'mvinfluence'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Willem Kruijer <willem.kruijer@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Willem",
                      family = "Kruijer",
                      role = c("aut", "cre"),
                      email = "willem.kruijer@wur.nl"),
               person(given = c("with", "a", "contribution", "from", "Ian", "White.", "Contains", "data", "collected", "by", "Padraic"),
                      family = "Flood",
                      role = "aut",
                      comment = "the internal function pin"),
               person(given = "Rik",
                      family = "Kooke.",
                      role = "aut"))
as necessary.
checkRd: (-1) marker_h2.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:41-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "david.morina@uab.cat"),
               person(given = "Manuel",
                      family = "Higueras",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut"),
               person(given = "María",
                      family = "Oliveira",
                      role = "aut"))
as necessary.
checkRd: (-1) glm.hermite.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:55-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:59-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:61-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:66-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) phermite.Rd:38: Lost braces; missing escapes or markup?
    38 |   {b} and \code{m} to be lower (or greater) than \code{q}.
       |   ^
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
checkRd: (-1) hero.Rd:67-68: Lost braces
    67 | then \code{\link[pbapply]{pblapply}} is used. If code{package ==
       |                                                      ^
checkRd: (-1) hero.Rd:69: Lost braces
    69 | code{package == "Rmpi"}, then \code{\link[Rmpi]{mpi.applyLB}} is used.}
       |     ^
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmvLiym/file1b0f6447760d6d/generate.data3d.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running examples in ‘hero-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.hero_bspline
> ### Title: Plot a 'hero_bspline' object
> ### Aliases: plot.hero_bspline
> 
> ### ** Examples
> 
> x = bspline(nbasis = 10, extend = FALSE)
> plot(x)
> plot(x, nderiv = 1)
> plot(x, kcol = "grey") # plot vertical lines at knots
> 
> # extend knots passed rangeval
> x2 = bspline(nbasis = 10, extend = TRUE)
> plot(x2, kcol = "grey")
> 
> # compare to plot.fd
> if (requireNamespace("fda", quietly = TRUE)) {
+    x3 = fda::create.bspline.basis(nbasis = 10)
+    par(mfrow = c(2, 1))
+    plot(x, kcol = "grey")
+    title("plot.hero_bspline")
+ }
> plot(x3)
Error: object 'x3' not found
Execution halted
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/HEssRNA.Rcheck/00install.out’ for details.
Maintainer: ‘Haiyan Wang <hwang@ksu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haiyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "hwang@ksu.edu"),
               person(given = "Mickael",
                      family = "Akritas",
                      role = "aut"),
               person(given = "James",
                      family = "Higgins",
                      role = "aut"),
               person(given = "Dale",
                      family = "Blasi",
                      role = "aut"))
as necessary.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpvGlXbl/file1b10b956513683/initialize.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpWLL7PZ/file1b0eaf7da21445': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpWLL7PZ/file1b0eaf7da21445': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

The Description field contains
  are described in Parast et al (2022) <arXiv:2209.08315>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Julian Taylor <julian.taylor@adelaide.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Taylor",
                    role = c("aut", "cre"),
                    email = "julian.taylor@adelaide.edu.au")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘hexDensity-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp5pBmOG/file1b0ede1b4efebe/xy2hcell.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpAsXryp/ltx1b100a3f2dd054/meanderingTriangles.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
No examples, no tests, no vignettes
Package required but not available: ‘ggimage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristian Yones <cyones@sinc.unl.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cristian",
                    family = "Yones",
                    role = c("aut", "cre"),
                    email = "cyones@sinc.unl.edu.ar")
as necessary.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz",
                    comment = "Jie Fu Yu made a prototype")
as necessary.
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp2a3tZ9/Rf1ac4b059b62c5': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Johann Pfitzinger <johann.pfitzinger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johann",
                    family = "Pfitzinger",
                    role = c("aut", "cre"),
                    email = "johann.pfitzinger@gmail.com")
as necessary.
Maintainer: ‘Xia Shen <xia.shen@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Moudud",
                      family = "Alam",
                      role = "aut"),
               person(given = "Lars",
                      family = "Ronnegard",
                      role = "aut"),
               person(given = "Xia",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "xia.shen@ki.se"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nobuki Takayama <takayama@math.kobe-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nobuki",
                      family = "Takayama",
                      role = c("aut", "cre"),
                      email = "takayama@math.kobe-u.ac.jp"),
               person(given = "Tamio",
                      family = "Koyama",
                      role = "aut"),
               person(given = "Tomonari",
                      family = "Sei",
                      role = "aut"),
               person(given = "Hiromasa",
                      family = "Nakayama",
                      role = "aut"),
               person(given = "Kenta",
                      family = "Nishiyama",
                      role = "aut"))
as necessary.
Maintainer: ‘Jinan Pang <pang.jinan@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "JinanPang",
                      role = c("aut", "cre")),
               person(family = "HuiLi",
                      role = "ctb"),
               person(given = "Jinan",
                      family = "Pang",
                      role = "cre",
                      email = "pang.jinan@qq.com"))
as necessary.
Maintainer: ‘Yongjian Kang <yongjiak@usc.edu>’

The Description field contains
  (2018)<arXiv:1606.03803>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpF7nfDa/file1c5ff629d4e17d': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpF7nfDa/file1c5ff629d4e17d': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'car', 'Rcmdr', 'RcmdrPlugin.HH', 'microplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lilin Yin <ylilin@163.com>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpWKvf7B/Rf1ab5ae1d3bafc8': No space left on device
Packages required but not available: 'auk', 'diffHic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jason A. Osborne <jaosborn@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jason", "A."),
                      family = "Osborne",
                      role = c("aut", "cre"),
                      email = "jaosborn@ncsu.edu"),
               person(given = c("Christopher", "T."),
                      family = "Franck",
                      role = "aut"),
               person(given = "Bongseog",
                      family = "Choi",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_threshold.R’ ‘compute_chromosomes_length.R’
    ‘create_hidecan_plot.R’ ‘gwaspoly_helper_functions.R’
    ‘input_data_constructors.R’
Warning in file() :
  cannot open file '/tmp/RtmpwLYMGy/Rf1aea4773d74f37': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Maintainer: ‘Thomas Lin Pedersen <thomasp85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "Lin"),
                    family = "Pedersen",
                    role = c("aut", "cre"),
                    email = "thomasp85@gmail.com")
as necessary.
Running massageExamples to create ‘hierBipartite-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpAYyxF9/file1b0fe0622432e6/ctrp2.R': No space left on device
Execution halted
 NONE
checkRd: (-1) read.VCF.Rd:21: Lost braces
    21 | Reads a \url{https://samtools.github.io/hts-specs/}{Variant Call Format (VCF)} file into a BED object,
       |                                                    ^
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
checkRd: (-1) hierNet.Rd:28: Lost braces; missing escapes or markup?
    28 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |               ^
checkRd: (-1) hierNet.logistic.Rd:30: Lost braces; missing escapes or markup?
    30 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}  
       |               ^
checkRd: (-1) hierNet.logistic.Rd:63: Lost braces
    63 | \seealso{\link{predict.hierNet.logistic},link{hierNet.logistic.path}}
       |                                              ^
checkRd: (-1) hierNet.logistic.path.Rd:39: Lost braces; missing escapes or markup?
    39 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
checkRd: (-1) hierNet.path.Rd:38: Lost braces; missing escapes or markup?
    38 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/highcharter.Rcheck/00install.out’ for details.
Package required but not available: ‘highcharter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Huaiyu Zhang <huaiyuzhang1988@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huaiyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "huaiyuzhang1988@gmail.com"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘highfrequency-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpalPcjC/file1ba8871d19b0b3/IVinference.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Brandon LeBeau <lebebr01+highlightHTML@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘zoomerjoin’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survex’

Packages suggested but not available for checking: 'mice', 'riskRegression'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:2008.00863>.  X. Wang, R. Zhou, J. Ying, and D. P. Palomar
  Parametric Skew-t Distribution." <arXiv:2206.02412>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9VAfQh/ltx1caa75762f84e2/estimate_sample_moments.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Rickmer Schulte <R.Schulte@campus.lmu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Heidi",
                      family = "Seibold",
                      role = "aut",
                      email = "Heidi.Seibold@uzh.ch"),
               person(given = "Monia",
                      family = "Mahling",
                      role = "aut",
                      email = "monia.mahling@stat.uni-muenchen.de"),
               person(given = "Sebastian",
                      family = "Linne",
                      role = "aut",
                      email = "Sebastian.Linne@campus.lmu.de"),
               person(given = "Felix",
                      family = "Guenther",
                      role = "aut",
                      email = "felix.guenther@stat.uni-muenchen.de"),
               person(given = "Rickmer",
                      family = "Schulte",
                      role = "cre",
                      email = "R.Schulte@campus.lmu.de"))
as necessary.
Package required but not available: ‘spatstat’

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yuancheng Zhu <yuancheng.zhu@gmail.com>’

The Description field contains
  <arXiv:1802.04876> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daijiang Li <daijianglee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daijiang",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "daijianglee@gmail.com")
as necessary.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex T. Kalinka <alex.t.kalinka@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "T."),
                    family = "Kalinka",
                    role = c("aut", "cre"),
                    email = "alex.t.kalinka@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  numbers of balls belonging to the same n categories. <arXiv:1305.0717>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available:
  'dlookr', 'ggpubr', 'survminer', 'labelled'

Package suggested but not available for checking: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geiger', 'TreeSim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘HistData-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CushnyPeebles
> ### Title: Cushny-Peebles Data: Soporific Effects of Scopolamine
> ###   Derivatives
> ### Aliases: CushnyPeebles CushnyPeeblesN
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> data(CushnyPeebles)
> # quick looks at the data
> plot(CushnyPeebles)
> boxplot(CushnyPeebles, ylab="Hours of Sleep", xlab="Treatment")
> 
> ##########################
> # Repeated measures MANOVA
> 
> CPmod <- lm(cbind(Control, L_hyoscyamine, L_hyoscine, DL_hyoscine) ~ 1, data=CushnyPeebles)
> 
> # Assign within-S factor and contrasts
> Treatment <- factor(colnames(CushnyPeebles), levels=colnames(CushnyPeebles))
> contrasts(Treatment) <- matrix(
+ 	c(-3, 1, 1, 1,
+ 	   0,-2, 1, 1,
+ 	   0, 0,-1, 1), ncol=3)
> colnames(contrasts(Treatment)) <- c("Control.Drug", "L.DL", "L_hy.DL_hy")
> 
> Treats <- data.frame(Treatment)
> if (require(car)) {
+ (CPaov <- Anova(CPmod, idata=Treats, idesign= ~Treatment))
+ }
Loading required package: car
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘car’
> summary(CPaov, univariate=FALSE)
Error: object 'CPaov' not found
Execution halted
Maintainer: ‘Michael Milton <michael.r.milton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Milton",
                    role = c("aut", "cre"),
                    email = "michael.r.milton@gmail.com")
as necessary.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jouke Witteveen <j.witteveen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jouke",
                    family = "Witteveen",
                    role = c("aut", "cre"),
                    email = "j.witteveen@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘trialr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Unknown package ‘FuncMap’ in Rd xrefs
Packages required but not available: 'haven', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) hlt.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:77-78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Samuel Thomas <samthoma@iu.edu>’

The Description field contains
  Monte Carlo" <arXiv:1701.02434>, Thomas, S., Tu, W. (2020) "Learning
  Hamiltonian Monte Carlo in R" <arXiv:2006.16194>, Gelman, A., Carlin,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘canham.Rmd’ using rmarkdown
--- finished re-building ‘canham.Rmd’

--- re-building ‘constant-growth.Rmd’ using rmarkdown
--- finished re-building ‘constant-growth.Rmd’

--- re-building ‘here_be_dragons.Rmd’ using rmarkdown

Quitting from here_be_dragons.Rmd:27-36 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'mixtools'
---
Backtrace:
    ▆
 1. └─base::library(mixtools)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'here_be_dragons.Rmd' failed with diagnostics:
there is no package called 'mixtools'
--- failed re-building ‘here_be_dragons.Rmd’

--- re-building ‘hmde.Rmd’ using rmarkdown
--- finished re-building ‘hmde.Rmd’

--- re-building ‘hmde_for_mathematicians.Rmd’ using rmarkdown
--- finished re-building ‘hmde_for_mathematicians.Rmd’

--- re-building ‘von-bertalanffy.Rmd’ using rmarkdown
--- finished re-building ‘von-bertalanffy.Rmd’

SUMMARY: processing the following file failed:
  ‘here_be_dragons.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Hmisc.Rcheck/00install.out’ for details.
Package required but not available: ‘mc2d’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.
checkRd: (-1) nafracCalc.Rd:45: Lost braces
    45 |   as if code{y} were not of class \code{"multipleHmmDataSets"}.
       |             ^
Maintainer: ‘Ting Wang <ting.wang@otago.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ting",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "ting.wang@otago.ac.nz"),
               person(given = "Wolfgang",
                      family = "Hayek",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Pletzer",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hmmTMB.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘theme_hmsid.Rd’
Error(s) in re-building vignettes:
  ...
--- re-building ‘hmsidwR.Rmd’ using rmarkdown

Quitting from hmsidwR.Rmd:51-84 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hmsidwR.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘hmsidwR.Rmd’

SUMMARY: processing the following file failed:
  ‘hmsidwR.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolas",
                    family = "Sauwen",
                    role = c("aut", "cre"),
                    email = "nicolas.sauwen@openanalytics.eu")
as necessary.
checkRd: (-1) HOasso.Rd:43: Lost braces; missing escapes or markup?
    43 | Arguments \code{x} and {y} are \code{character} objects and can assume values   \code{"sout"}, \code{"dout"}, \code{"lout"}, \code{"sin"}, \code{"din"}, \code{"lin"} representing the out-strength, out-degree, out-log-strength, in-strength, in-degree, and in-log-strength respectively.
       |                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘rstar_glm.Rd’ ‘run_sim_rstar_glm.Rd’ ‘sim_rstar_glm.Rd’
Maintainer: ‘Lawrence Hudson <quicklizard@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lawrence",
                    family = "Hudson",
                    role = c("aut", "cre"),
                    email = "quicklizard@googlemail.com")
as necessary.
Running ‘test_base.R’ [1s/2s]
  Running ‘test_syntax.R’ [1s/2s]
Running the tests in ‘tests/test_base.R’ failed.
Complete output:
  > # remove.packages("HonestDiD")
  > # install.packages(".", repos=NULL, type="source")
  > # testthat::test_dir("tests")
  > 
  > library(lfe)
  Loading required package: Matrix
  > library(haven)
  Error in library(haven) : there is no package called 'haven'
  Execution halted
Maintainer: ‘Saiem Gilani <saiem.gilani@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
Package required but not available: ‘questionr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kevin Wright <kw.stat@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/kwstat/hopkins/
which should likely be
  https://github.com/kwstat/hopkins/issues
instead.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

Package suggested but not available for checking: ‘miceadds’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Csaba Farago <farago@inf.u-szeged.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Csaba",
                    family = "Farago",
                    role = c("aut", "cre"),
                    email = "farago@inf.u-szeged.hu")
as necessary.
Maintainer: ‘Ryan Hafen <rhafen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ryan",
                    family = "Hafen",
                    role = c("aut", "cre"),
                    email = "rhafen@gmail.com")
as necessary.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexandru Monahov <alexandru.monahov@proton.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandru",
                    family = "Monahov",
                    role = c("aut", "cre"),
                    email = "alexandru.monahov@proton.me")
as necessary.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pec’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Antiporta <dantiporta@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "Antiporta;", "Matthew", "Matheson", "<mmathes4@jhu.edu>;", "Derek", "Ng", "<dng@jhu.edu>;", "Alvaro", "Munoz"),
                      family = "<amunoz@jhu.edu>",
                      role = "aut",
                      email = "amunoz@jhu.edu"),
               person(given = "Daniel",
                      family = "Antiporta",
                      role = "cre",
                      email = "dantiporta@jhu.edu"))
as necessary.
Running massageExamples to create ‘hrcomprisk-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpm5ACYS/file1c107d7589a742/bootCRCumInc.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Note: skipping ‘Ch_missing_values.Rnw’ due to unavailable dependencies:
  'mice'
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Giacomo Ceoldo <giacomo.ceoldo@usi.ch>’

The Description field contains
  <arXiv:2304.09809>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpV6boXA/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpcc2UML/file1c000236301227': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpcc2UML/file1c000236301227': No such file or directory
Error in file(con, "r") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/HTGM3D.Rcheck/00install.out’ for details.
Maintainer: ‘Sangchul Park <mail@sangchul.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sangchul",
                    family = "Park",
                    role = c("aut", "cre"),
                    email = "mail@sangchul.com")
as necessary.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘"Markus Loecher, Berlin School of Economics and Law (BSEL)" <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = c("Berlin", "School", "of"),
                      family = "Economics",
                      role = "aut"),
               person(family = "Law\"",
                      role = "aut",
                      email = "markus.loecher@gmail.com",
                      comment = "BSEL"))
as necessary.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5uV1N7/ltx1c1bc36724a48e/JSEvals.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/htmxr.Rcheck/00install.out’ for details.
Packages required but not available: 'caret', 'tune', 'recipes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrea Rau <andrea.rau@jouy.inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrea",
                      family = "Rau",
                      role = c("aut", "cre"),
                      email = "andrea.rau@jouy.inra.fr"),
               person(given = "Gilles",
                      family = "Celeux",
                      role = "aut"),
               person(given = "Marie-Laure",
                      family = "Martin-Magniette",
                      role = "aut"),
               person(given = c("Cathy", "Maugis-"),
                      family = "Rabusseau",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpqoQ6zM/file21e4f41d6c4ed6': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpqoQ6zM/file21e4f41d6c4ed6': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘oauth2.0_token.Rd’, ‘oauth_app.Rd’, ‘oauth_callback.Rd’, ‘oauth_endpoint.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmplhMC5Q/file1c2e7e7975e3bc/get_temperature.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Paul Richardson <p.richardson.54391@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Richardson",
                    role = c("aut", "cre"),
                    email = "p.richardson.54391@gmail.com")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Dustin Sallings <dustin@spy.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dustin",
                    family = "Sallings",
                    role = c("aut", "cre"),
                    email = "dustin@spy.net")
as necessary.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

The Description field contains
  (https://github.com/ chovy/humanparser) provides functions for parsing
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Natalia Novoselova <novos65@mail.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalia", "Novoselova,Junxi", "Wang,Jialiang"),
                      family = "Li",
                      role = "aut"),
               person(given = c("Frank", "Pessler,Frank"),
                      family = "Klawonn",
                      role = "aut"),
               person(given = "Natalia",
                      family = "Novoselova",
                      role = "cre",
                      email = "novos65@mail.ru"))
as necessary.
checkRd: (-1) CalcROC.Rd:47: Lost braces
    47 | The accuracy of the classifier is the mean value of dQuote{(optSn, optSp)} for two-class problem and the mean value of \dQuote{(optSn, optSp,optS3)} for three-class problem.
       |                                                           ^
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggmap’

Package suggested but not available for checking: ‘hurricaneexposuredata’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘HVT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clustHVT
> ### Title: Performing Hierarchical Clustering Analysis
> ### Aliases: clustHVT
> ### Keywords: Clustering_Analysis
> 
> ### ** Examples
> 
> data("EuStockMarkets")
> dataset <- data.frame(t = as.numeric(time(EuStockMarkets)),
+                      DAX = EuStockMarkets[, "DAX"],
+                      SMI = EuStockMarkets[, "SMI"],
+                      CAC = EuStockMarkets[, "CAC"],
+                      FTSE = EuStockMarkets[, "FTSE"])
> rownames(EuStockMarkets) <- dataset$t
> hvt.results<- trainHVT(dataset[-1],n_cells = 30, depth = 1, quant.err = 0.1,
+                       distance_metric = "L1_Norm", error_metric = "max",
+                       normalize = TRUE,quant_method = "kmeans")
Loading required namespace: deldir
Loading required namespace: Hmisc
Failed with error:  ‘there is no package called ‘Hmisc’’
Loading required namespace: splancs
Loading required namespace: conf.design
Loading required namespace: Rtsne
Loading required namespace: umap
Loading required namespace: FNN
Loading required namespace: MASS
Initial stress        : 0.00032
stress after  10 iters: 0.00014, magic = 0.500
stress after  20 iters: 0.00014, magic = 0.500
> scoring <- scoreHVT(dataset, hvt.results, analysis.plots = TRUE, names.column = dataset[,1])
Loading required namespace: data.table
Scale for colour is already present.
Adding another scale for colour, which will replace the existing scale.
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Error in loadNamespace(x) : there is no package called ‘plotly’
Calls: scoreHVT
Execution halted
Maintainer: ‘John Maindonald <jhmaindonald@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Maindonald",
                      role = c("aut", "cre"),
                      email = "jhmaindonald@gmail.com"),
               person(given = c("with", "\\code{hwexact}", "from", "Randall"),
                      family = "Johnson.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sergio Venturini <sergio.venturini@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "sergio.venturini@unicatt.it")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hwep.Rcheck/00install.out’ for details.
Maintainer: ‘Gregoire Pau <gregoire.pau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gregoire",
                    family = "Pau",
                    role = c("aut", "cre"),
                    email = "gregoire.pau@gmail.com")
as necessary.
Maintainer: ‘Guy Nason <g.nason@imperial.ac.uk>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Matthew Cserhati <csmatyi@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Cserhati",
                    role = c("aut", "cre"),
                    email = "csmatyi@protonmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp9VT5jV/Rf1c60b66d0c5508': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hyd1d.Rmd’ using rmarkdown
--- finished re-building ‘hyd1d.Rmd’

--- re-building ‘vignette_DE.Rmd’ using rmarkdown

Quitting from vignette_DE.Rmd:426-458 [figure04]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file ‘/tmp/RtmpTrjvcf/file1d5f6e8af796’
---
Backtrace:
    ▆
 1. └─hyd1d::plotShiny(...)
 2.   ├─base::do.call(.plotShiny, dots)
 3.   └─hyd1d (local) `<fn>`(...)
 4.     ├─base::do.call(.plot, dots)
 5.     └─hyd1d (local) `<fn>`(...)
 6.       ├─graphics::plot(...)
 7.       └─graphics::plot.default(...)
 8.         └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette ‘vignette_DE.Rmd’ failed with diagnostics:
could not open file ‘/tmp/RtmpTrjvcf/file1d5f6e8af796’
--- failed re-building ‘vignette_DE.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette_DE.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Arnd Weber <arnd.weber@bafg.de>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Martin Keller-Ressel <martin.keller-ressel@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Keller-Ressel",
                    role = c("aut", "cre"),
                    email = "martin.keller-ressel@tu-dresden.de")
as necessary.

The Description field contains
  <arXiv:1903.08977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZcrNKV/file1cab3042b4d2f5/spec_energy_trap.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘dataRetrieval’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bettina Grün <Bettina.Gruen@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nick Bond <n.bond@latrobe.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Bond",
                    role = c("aut", "cre"),
                    email = "n.bond@latrobe.edu.au")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpKGbmZy/Rf1c60751c5a706f': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mauricio Zambrano-Bigiarini <mzb.devel@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
cannot open the connection
checkRd: (-1) extractPeriod.Rd:57: Lost braces
    57 | NOTE: all the dates in the datalist should follow the format in ?as.Date{base}.
       |                                                                         ^
problem found in ‘collectData_txt_anarbe.Rd’
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmptuCEIB/Rf1ce8ccc060a7b': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Scott",
                    role = c("aut", "cre"),
                    email = "d.scott@auckland.ac.nz")
as necessary.
Maintainer: ‘Michael Scholz <michael.scholz@th-deg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Scholz",
                    role = c("aut", "cre"),
                    email = "michael.scholz@th-deg.de")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpumdXUi/file1ca9bc515ddfa5': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpumdXUi/file1ca9bc515ddfa5': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: http:/functions.wolfram.com/HypergeometricFunctions/
    From: inst/doc/hypergeometric.pdf
    Message: Invalid URL: missing authority part
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9G3q3F/ltx1caa8d1998972c/hypergeo_A_nonpos_int.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘David J. Marchette <dmarchette@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J."),
                    family = "Marchette",
                    role = c("aut", "cre"),
                    email = "dmarchette@gmail.com")
as necessary.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Claudia Beleites <Claudia.Beleites@chemometrix.gmbh>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpvUL8Gb/file1d8d10637654e': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpvUL8Gb/file1d8d10637654e': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking: 'mapview', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hypothesis-api.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘equations.R’
Maintainer: ‘"Stefan Rass, on behalf of the Austrian Institute of Technology" <stefan.rass@jku.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Rass",
                      role = "aut"),
               person(given = "Sandra",
                      family = "Koenig",
                      role = "aut"),
               person(given = "Ali",
                      family = "Alshawish",
                      role = "aut"),
               person(given = "\"Stefan",
                      family = "Rass",
                      role = "cre"),
               person(given = c("on", "behalf", "of", "the", "Austrian", "Institute", "of"),
                      family = "Technology\"",
                      role = "cre",
                      email = "stefan.rass@jku.at"))
as necessary.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
Found the following files/directories:
  ‘hystar-manual.tex’
Maintainer: ‘Spencer Maynes <smaynes89@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Maynes",
                      role = c("aut", "cre"),
                      email = "smaynes89@gmail.com"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"),
               person(given = "Anne",
                      family = "Parkhurst",
                      role = "aut"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpmnJbvy/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpA76yTf/ltx1ca82a54b65ae3/corona_data_all.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘John Lawson <lawsonjsl7net@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lawson",
                    role = c("aut", "cre"),
                    email = "lawsonjsl7net@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Ran Zhao <Zhaoran@mail.sdu.edu.cn>’

The Description field contains
  in He et al. (2023) <arXiv:2301.00360>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Satoshi Takahashi <takahasi@lisboa.ics.nara-wu.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Satoshi",
                    family = "Takahashi",
                    role = c("aut", "cre"),
                    email = "takahasi@lisboa.ics.nara-wu.ac.jp")
as necessary.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘ibdPosteriors.Rd’, ‘ibdfindr-package.Rd’, ‘plotIBD.Rd’, ‘totalLoglik.Rd’
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kuang Zhou <kzhoumath@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kuang", "Zhou;", "Arnaud", "Martin"),
                      family = "<arnaud.martin@univ-rennes1.fr>",
                      role = "aut",
                      email = "arnaud.martin@univ-rennes1.fr"),
               person(given = "Kuang",
                      family = "Zhou",
                      role = "cre",
                      email = "kzhoumath@163.com"))
as necessary.

The Description field contains
  Philippe Smets <arXiv:1304.1122>, evidence combination, evidence
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpUcpKeq/libloc_197_fb92f8f37c511be1.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  article (Gosiewska and Biecek 2019) <arXiv:1903.11420> This package is
  a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) setServerLogLevel.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:24: Lost braces in \enumerate; meant \describe ?
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp6PkFEf/Rf1cf9fc46666226': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpEmc2mb/ltx1d584c546f863e/plot.forwardibr.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.
Maintainer: ‘Cyprien Mbogning <cyprien.mbogning@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cyprien",
                      family = "Mbogning",
                      role = c("aut", "cre"),
                      email = "cyprien.mbogning@gmail.com"),
               person(given = "Philippe",
                      family = "Broet",
                      role = "aut"))
as necessary.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpKqMaQA/Rd2pdf1c4f9075d59432/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Oscar M. Rueda <Oscar.Rueda@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Oscar", "M"),
                      family = "Rueda",
                      role = "aut"),
               person(given = c("Jose", "Antonio", "Seoane"),
                      family = "Fernandez",
                      role = "aut"),
               person(given = c("Oscar", "M."),
                      family = "Rueda",
                      role = "cre",
                      email = "Oscar.Rueda@mrc-bsu.cam.ac.uk"))
as necessary.
Maintainer: ‘Daliang Ning <ningdaliang@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daliang",
                    family = "Ning",
                    role = c("aut", "cre"),
                    email = "ningdaliang@ou.edu")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jacob R. Bradley <cobrbradley@gmail.com>’

The Description field contains
  and Cannings (2021) <arXiv:2102.04296>. This package allows the user to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                     ^
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                                  ^
Maintainer: ‘Daniel Nevo <danielnevo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Nevo",
                    role = c("aut", "cre"),
                    email = "danielnevo@gmail.com")
as necessary.

The Description field contains
  proportional hazard model, Nevo et al. (2018+) <arXiv:1801.01529>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Weichi Yao <wy635@stern.nyu.edu>’

The Description field contains
  <arXiv:1901.04599>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Matthew Wolak <matthewwolak@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Checking relative paths failed with message:
  cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘icd_lookup.R’
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lorenz",
                      family = "Brachtendorf",
                      role = "aut",
                      email = "Lorenz.Brachtendorf@gmx.de"),
               person(given = "Stephan",
                      family = "Dlugosz",
                      role = c("aut", "cre"),
                      email = "stephan.dlugosz@googlemail.com"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Sam Parsons <sam.parsons@radboudumc.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/sdparsons/ICED
which should likely be
  https://github.com/sdparsons/ICED/issues
instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'ggpubr', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Clifford Anderson-Bergman <pistacliffcho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Clifford",
                    family = "Anderson-Bergman",
                    role = c("aut", "cre"),
                    email = "pistacliffcho@gmail.com")
as necessary.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmprSs84y/file1d859f1b391588', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprSs84y/file1d859f1b391588/IR_diabetes.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Xiangdong Gu <ustcgxd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangdong",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "ustcgxd@gmail.com"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Bpa.Rd:39-40: Lost braces
    39 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) Fpa.Rd:42-43: Lost braces
    42 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) icesRound.Rd:64-65: Lost braces
    64 | \doi{10.17895/ices.pub.3038}{\emph{ICES Advice Technical
       |                             ^
checkRd: (-1) mohn.Rd:71-72: Lost braces
    71 | \doi{10.17895/ices.pub.5997}{\emph{ICES Scientific Reports
       |                             ^
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'leafgl', 'leafsync'

Packages suggested but not available for checking: 'mapview', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ICGOR-package.Rd’:
    \keyword{ package, generalized odds rate hazards m [TRUNCATED]
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmphyy4c0/file1da06655ace461/tradingDays.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘ichimoku-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmptXJEdS/file1dbc036df5fda9/look.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Ulrike Groemping <ulrike.groemping@bht-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ulrike",
                    family = "Groemping",
                    role = c("aut", "cre"),
                    email = "ulrike.groemping@bht-berlin.de")
as necessary.
Packages required but not available: 'car', 'coefplot', 'papeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpidk1s7/file1d66294b20f0e5/plot.iClusterVB.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘icomb.Rmd’ using rmarkdown

Quitting from icomb.Rmd:37-45 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'icomb.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘icomb.Rmd’

SUMMARY: processing the following file failed:
  ‘icomb.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ICompELM.Rcheck/00install.out’ for details.
Maintainer: ‘Adam T. Kocsis <adam.t.kocsis@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/Rtmp2aKbmF/Rf1cf8b464ba4172': No space left on device
Packages required but not available: 'GGally', 'heplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) data.Rd:7: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:9: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Lianming Wang <wangl@stat.sc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christopher", "S."),
                      family = "McMahan",
                      role = "aut"),
               person(given = "Lianming",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wangl@stat.sc.edu"))
as necessary.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Olga Savchuk <olga.y.savchuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olga",
                    family = "Savchuk",
                    role = c("aut", "cre"),
                    email = "olga.y.savchuk@gmail.com")
as necessary.
Package required but not available: ‘spatstat’

Package suggested but not available for checking: ‘ecespa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Packages required but not available: 'nrba', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ordbetareg’

Packages suggested but not available for checking: 'cmdstanr', 'shinystan'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'CliquePercolation', 'concorR', 'sna'

Packages suggested but not available for checking: 'egor', 'ergm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggimage', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Unknown package ‘RSGHB’ in Rd xrefs
Running massageExamples to create ‘idefix-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpTvqnit/file1da66a73d8e7e6/Datatrans.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpZYwh6P/ltx1dbc372c10630a', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZYwh6P/ltx1dbc372c10630a/ABerr.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘FRK’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hideitsu Hino <hideitsu.hino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideitsu",
                    family = "Hino",
                    role = c("aut", "cre"),
                    email = "hideitsu.hino@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Caleb A. Class <cclass@butler.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Caleb", "A."),
                      family = "Class",
                      role = c("aut", "cre"),
                      email = "cclass@butler.edu"),
               person(given = c("Min", "Jin"),
                      family = "Ha",
                      role = "aut",
                      email = "mjha@mdanderson.org"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'ggpubr', 'ggtree', 'badger'

VignetteBuilder package required for checking but not installed: ‘badger’
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘idiogramFISH-package.Rd’, ‘insertInList.Rd’, ‘make.uniqueIF.Rd’, ‘makeNumCols.Rd’, ‘makeVectorNames.Rd’, ‘makedfMarkColor.Rd’, ‘makedfMarkColorMycolors.Rd’, ‘mapGGChr.Rd’
Running massageExamples to create ‘idiogramFISH-Ex.R’ failed
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Pavel Linhart <pavel.linhart@centrum.cz>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Angelos Markos <amarkos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alfonso", "Iodice", "D'"),
                      family = "Enza",
                      role = "aut"),
               person(given = "Angelos",
                      family = "Markos",
                      role = c("aut", "cre"),
                      email = "amarkos@gmail.com"),
               person(given = "Davide",
                      family = "Buttarazzi",
                      role = "ctb"))
as necessary.
Running examples in ‘idm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: i_pca
> ### Title: Incremental Principal Component Analysis (PCA)
> ### Aliases: i_pca
> 
> ### ** Examples
> 
> data("segmentationData", package = "caret")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘caret’
Calls: data -> find.package
Execution halted
Maintainer: ‘Ang Dong <fantasys05227@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ang",
                    family = "Dong",
                    role = c("aut", "cre"),
                    email = "fantasys05227@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘iDOVE_vignette.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpE17y7R/Rf1cdc573c8f0301': No space left on device

Quitting from iDOVE_vignette.Rmd:189-191 [data-head]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from iDOVE_vignette.Rmd:189-191 [data-head]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'iDOVE_vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘iDOVE_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘iDOVE_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Qunhua Li <qunhua.li@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qunhua",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "qunhua.li@psu.edu")
as necessary.
Maintainer: ‘Rich FitzJohn <rich.fitzjohn@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: gfycat.com
    From: man/adjective_animal.Rd
Maintainer: ‘Erik Doffagne <erik.doffagne@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erik",
                    family = "Doffagne",
                    role = c("aut", "cre"),
                    email = "erik.doffagne@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Luis F. Duque <lfduquey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luis", "F."),
                    family = "Duque",
                    role = c("aut", "cre"),
                    email = "lfduquey@gmail.com")
as necessary.
Maintainer: ‘Joshua N. Pritikin <jpritikin@pobox.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpjUYANY/Rf1ea4601b4f8ff0': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Luca Braglia <lbraglia@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fadhlul Mubarak <mubarakfadhlul@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Stefano M. Iacus <siacus@iq.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S.", "M."),
                      family = "Iacus",
                      role = "aut"),
               person(given = c("Stefano", "M."),
                      family = "Iacus",
                      role = "cre",
                      email = "siacus@iq.harvard.edu"))
as necessary.
Maintainer: ‘Matthew Jackson <mattjackson4@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kai Wang <kai-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Kai"),
                      family = "Wang",
                      role = "aut"),
               person(given = "Kai",
                      family = "Wang",
                      role = "cre",
                      email = "kai-wang@uiowa.edu"))
as necessary.
Package required but not available: ‘MBESS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘ig.Rd’, ‘ig_cpp_vec.Rd’, ‘igcop.Rd’, ‘igl.Rd’
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'ggpubr', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpHGEo0w/Rf1d84f94ad00587': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
cannot open the connection
problem found in ‘igo_members.Rd’
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Found the following assignments to the global environment:
File ‘IgorR/R/ReadIgorBinary.R’:
  assign(WaveName, rval, envir = .GlobalEnv)
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: LICENSE
    From: inst/README.md
Maintainer: ‘Sean J Westwood <seanjw@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sean", "J"),
                    family = "Westwood",
                    role = c("aut", "cre"),
                    email = "seanjw@stanford.edu")
as necessary.
Maintainer: ‘Wentao Lu <wlu1026@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wentao",
                      family = "Lu",
                      role = c("aut", "cre"),
                      email = "wlu1026@yahoo.com"),
               person(given = "Xinlei",
                      family = "Wang",
                      role = "aut"),
               person(given = "Xiaowei",
                      family = "Zhan",
                      role = "aut"))
as necessary.
Maintainer: ‘Nitesh Kumar Sharma <sharmanitesh.iasri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nitesh", "Kumar"),
                      family = "Sharma",
                      role = c("aut", "cre"),
                      email = "sharmanitesh.iasri@gmail.com"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"),
               person(given = "Neeraj",
                      family = "Budhlakoti",
                      role = "aut"),
               person(given = c("Md.", "Samir"),
                      family = "Farooqi",
                      role = "aut"))
as necessary.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) simHawkes1a.Rd:35: Lost braces; missing escapes or markup?
    35 | distribution; 'd${dis}' gives the density function \eqn{g(\cdot)}.}
       |                  ^
Packages required but not available: 'caret', 'GenomicAlignments'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tim Liao <tfliao@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Liao",
                    role = c("aut", "cre"),
                    email = "tfliao@illinois.edu")
as necessary.
Packages required but not available: 'Hmisc', 'NSM3'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘"Christopher, E. Maerzluft" <cmaerzlu@rand.org>’

The Description field contains
  <arXiv:1804.02090>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) define_target_function.Rd:41: Lost braces; missing escapes or markup?
    41 | be done either as a single vector of values (e.g. `function(x) { ... }`), or individual inputs for each parameter
       |                                                                ^
checkRd: (-1) define_target_function.Rd:42: Lost braces; missing escapes or markup?
    42 | (e.g. `function(x1, x2) { ... }`). If a single vector is used, all parameters will be passed to the target function as
       |                         ^
Packages required but not available: 'dae', 'Hmisc', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex J.C. Witsil <alexjcwitsil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J.C."),
                    family = "Witsil",
                    role = c("aut", "cre"),
                    email = "alexjcwitsil@gmail.com")
as necessary.
Maintainer: ‘Shota Ochi <shotaochi1990@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BalanceSimplest.Rd’:
    https://doi.org/10.5201/ipol.2011.llmps-scb
  File ‘DenoiseDCT.Rd’:
    https://doi.org/10.5201/ipol.2011.ys-dct
  File ‘EqualizePiecewise.Rd’:
    https://doi.org/10.5201/ipol.2012.lps-pae
  File ‘SPE.Rd’:
    https://doi.org/10.5201/ipol.2014.84
Checking relative paths failed with message:
  cannot open the connection
Running massageExamples to create ‘imagerExtra-Ex.R’ failed
Maintainer: ‘Juergen Niedballa <niedballa@izw-berlin.de>’

The Description field contains
  <arXiv:1505.04597> and the U-Net++ architecture by Zhou et al. (2018)
  <arXiv:1807.10165>. We provide pre-trained models for assessing canopy
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidymodels’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yuan Li <851277048@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daxuan", "Deng", "Yuan"),
                      family = "Li",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Li",
                      role = "cre",
                      email = "851277048@qq.com"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: omdbAPI documentation
    From: man/find_by_title.Rd
  URI: omdbAPI documentation
    From: man/search_by_title.Rd
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kai Wang <kai-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Kai"),
                      family = "Wang",
                      role = "aut"),
               person(given = "Kai",
                      family = "Wang",
                      role = "cre",
                      email = "kai-wang@uiowa.edu"))
as necessary.
Packages required but not available: 'plotly', 'MBESS'

Package suggested but not available for checking: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'caret', 'tidyverse', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Keefe Murphy <keefe.murphy@mu.ie>’

The BugReports field in DESCRIPTION has
  https://github.com/Keefe-Murphy/IMIFA
which should likely be
  https://github.com/Keefe-Murphy/IMIFA/issues
instead.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ignacio Martinez <ignacio@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ignacio",
                    family = "Martinez",
                    role = c("aut", "cre"),
                    email = "ignacio@protonmail.com")
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Jan",
                      family = "Steinfeld",
                      role = "aut"))
as necessary.
Maintainer: ‘Ruzhang Zhao<ruzhangzhao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruzhang",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "ruzhangzhao@gmail.com"),
               person(given = "Pengyu",
                      family = "Hong",
                      role = "aut"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'immundata', 'airr', 'dbplyr'

Packages suggested but not available for checking:
  'factoextra', 'ggpubr', 'ggraph', 'ggalluvial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

Package suggested but not available for checking: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Quentin", "Giai"),
                    family = "Gianetto",
                    role = c("aut", "cre"),
                    email = "quentin2g@yahoo.fr")
as necessary.
Package required but not available: ‘missMDA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nery", "Sofia"),
                    family = "Huerta-Pacheco",
                    role = c("aut", "cre"),
                    email = "nehuerta@uv.mx")
as necessary.
Maintainer: ‘Lucas Veras <lucasdsveras@gmail.com>’

Additional repositories with no packages:
  https://lveras.com/drat/
Package required but not available: ‘lvmisc’

Package suggested but not available for checking: ‘accdata’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpqZPzJ5/Rf1e7cfa4221065d': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Jonas Christoffer Lindstrøm <jonaslindstrom88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonas", "Christoffer"),
                    family = "Lindstrøm",
                    role = c("aut", "cre"),
                    email = "jonaslindstrom88@gmail.com")
as necessary.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'recipes', 'tune', 'workflows'

Packages suggested but not available for checking: 'censored', 'parsnip'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'haven'

Package suggested but not available for checking: ‘compareGroups’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'haven', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tolerance’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Federico Casale <casale@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Federico",
                    family = "Casale",
                    role = c("aut", "cre"),
                    email = "casale@hhu.de")
as necessary.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘parsnip’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/imputeREE.Rcheck/00install.out’ for details.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steffen Moritz <steffen.moritz10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Ajit Johnson Nirmal <ajitjohnson.n@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ajit", "Johnson"),
                    family = "Nirmal",
                    role = c("aut", "cre"),
                    email = "ajitjohnson.n@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin A. Stoffel <martin.adam.stoffel@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘incgraph-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Packages required but not available:
  'CDMConnector', 'omopgenerics', 'PatientProfiles'

Packages suggested but not available for checking:
  'dbplyr', 'Hmisc', 'flextable', 'visOmopResults'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) make_likelihood_matrix.Rd:16: Lost braces; missing escapes or markup?
    16 | This function creates a matrix such that P[t, s] = P(C = t | I = s) = theta_{t-s} for s <= t and 0 otherwise.
       |                                                                             ^
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘incR_rawdata.Rd’, ‘incRact.Rd’, ‘incRatt.Rd’, ‘incRbouts.Rd’, ‘incRenv.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpcX23LI/ltx1ea31969684798/incRplot.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'heatmaply', 'Hmisc', 'plotly'

Packages suggested but not available for checking:
  'HTSFilter', 'rtracklayer', 'ShortRead'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Utkarsh", "J."),
                      family = "Dang",
                      role = c("aut", "cre"),
                      email = "utkarshdang@cunet.carleton.ca"),
               person(given = c("G.", "Brian"),
                      family = "Golding",
                      role = "aut"))
as necessary.
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

The Description field contains
  proposed in Huling, Greifer, and Chen (2021) <arxiv:2107.07086>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel Grose <dan.grose@lancaster.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "B."),
                      family = "Berrett",
                      role = "aut",
                      email = "t.berrett@statslab.cam.ac.uk"),
               person(given = c("Daniel", "J."),
                      family = "Grose",
                      role = c("cre", "ctb"),
                      email = "dan.grose@lancaster.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut",
                      email = "r.samworth@statslab.cam.ac.uk"))
as necessary.
Maintainer: ‘Simon Trimborn <trimborn.econometrics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Trimborn",
                    role = c("aut", "cre"),
                    email = "trimborn.econometrics@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘IndexComp.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexMemberSelection.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexMembersUpdate.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexUpdate.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘RelativeWeights.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘SwitchDates.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
checkRd: (-1) IndexComp.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Alejandro Saavedra-Nieves <alejandro.saavedra.nieves@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Saavedra-Nieves",
                      role = c("aut", "cre"),
                      email = "alejandro.saavedra.nieves@gmail.com"),
               person(given = "Paula",
                      family = "Saavedra-Nieves",
                      role = "aut"))
as necessary.
Maintainer: ‘Graham White <g.white@unswalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Graham",
                    family = "White",
                    role = c("aut", "cre"),
                    email = "g.white@unswalumni.com")
as necessary.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Geoff Hosack <geoff.hosack@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Geoffrey", "R."),
                      family = "Hosack",
                      role = "aut"),
               person(given = "Geoff",
                      family = "Hosack",
                      role = "cre",
                      email = "geoff.hosack@csiro.au"))
as necessary.
Error(s) in re-building vignettes:
  ...
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ana C. Cebrian <acebrian@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ana", "C."),
                    family = "Cebrian",
                    role = c("aut", "cre"),
                    email = "acebrian@unizar.es")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6Jgpzl/file1eb11c7cc1c459/get_filter_shortcuts.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Ivan Skliarov <i.skliarov@student.uw.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Skliarov",
                    role = c("aut", "cre"),
                    email = "i.skliarov@student.uw.edu.pl")
as necessary.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Jonas Haslbeck <jonashaslbeck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lourens",
                      family = "Waldorp",
                      role = "aut",
                      email = "waldorp@uva.nl"),
               person(given = "Jonas",
                      family = "Haslbeck",
                      role = c("aut", "cre"),
                      email = "jonashaslbeck@gmail.com"))
as necessary.
Packages required but not available: 'ggpubr', 'robin'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/iNEXT.beta3D.Rcheck/00install.out’ for details.
Packages required but not available: 'ggnetwork', 'ggraph'

Packages suggested but not available for checking:
  'ggpubr', 'plotly', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Denis Talbot <denis.talbot@fmed.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Talbot",
                      role = c("aut", "cre"),
                      email = "denis.talbot@fmed.ulaval.ca"),
               person(given = "Thierry",
                      family = "Duchesne",
                      role = "aut"),
               person(given = "Jacques",
                      family = "Brisson",
                      role = "aut"),
               person(given = "Nathalie",
                      family = "Vandal",
                      role = "aut"))
as necessary.
Maintainer: ‘Yufang Qin <yfqin@shou.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yufang",
                    family = "Qin",
                    role = c("aut", "cre"),
                    email = "yfqin@shou.edu.cn")
as necessary.
cannot open the connection
problem found in ‘usd_gdp_def.Rd’
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aditya Khanna <khanna7.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Jacobs",
                      role = "aut"),
               person(given = "Aditya",
                      family = "Khanna",
                      role = c("aut", "cre"),
                      email = "khanna7.work@gmail.com"),
               person(given = "Kamesh",
                      family = "Madduri",
                      role = "ctb"),
               person(given = "David",
                      family = "Bader",
                      role = "ctb"))
as necessary.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dominik Leutnant <leutnant@fh-muenster.de>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! I can't write on file `Rd2.toc'.
<to be read again> 
                   \relax 
l.40 \Rdcontents{Contents}
                          
! Emergency stop.
<to be read again> 
                   \relax 
l.40 \Rdcontents{Contents}
                          
!  ==> Fatal error occurred, no output PDF file produced!
Found the following files/directories:
  ‘infocausality-manual.tex’
Maintainer: ‘Larsen Kim <kblarsen4@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Information.Rd’:
    \keyword{IV,}
    \keyword{NIV,}
    \keyword{NWOE,}
    \keyword{WOE,}
    \keyword{classification,}
    \keyword{weight-of-evidence,}
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Patrick E. Meyer <software@meyerp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Patrick", "E."),
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "software@meyerp.com")
as necessary.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  universe (Biecek 2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Valentim Dias <dvdscripter@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "Valentim"),
                    family = "Dias",
                    role = c("aut", "cre"),
                    email = "dvdscripter@gmail.com")
as necessary.
Maintainer: ‘Lev Kuznetsov <levk@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lev",
                    family = "Kuznetsov",
                    role = c("aut", "cre"),
                    email = "levk@jimmy.harvard.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘estimate-epi-measures.Rmd’ using rmarkdown
--- finished re-building ‘estimate-epi-measures.Rmd’

--- re-building ‘model-injury-data-i.Rmd’ using rmarkdown
--- finished re-building ‘model-injury-data-i.Rmd’

--- re-building ‘model-injury-data-ii.Rmd’ using rmarkdown

Quitting from model-injury-data-ii.Rmd:50-59 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'survminer'
---
Backtrace:
    ▆
 1. └─base::library(survminer)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'model-injury-data-ii.Rmd' failed with diagnostics:
there is no package called 'survminer'
--- failed re-building ‘model-injury-data-ii.Rmd’

--- re-building ‘prepare-injury-data.Rmd’ using rmarkdown
--- finished re-building ‘prepare-injury-data.Rmd’

--- re-building ‘visualize-injury-data.Rmd’ using rmarkdown
--- finished re-building ‘visualize-injury-data.Rmd’

SUMMARY: processing the following file failed:
  ‘model-injury-data-ii.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Virgilio Gómez-Rubio <virgilio.gomez@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Virgilio",
                      family = "Gómez-Rubio",
                      role = c("aut", "cre"),
                      email = "virgilio.gomez@uclm.es"),
               person(given = "Roger",
                      family = "Bivand",
                      role = "aut",
                      email = "Roger.Bivand@nhh.no"))
as necessary.
Packages required but not available: 'fmesher', 'inlabru'

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jason C. Fisher <jfisher@usgs.gov>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpxULyqF/Rf1ea2b02df3b81f': No space left on device
Unknown package ‘fastshap’ in Rd xrefs
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'oeli', 'optimizeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rebaudo Francois <francois.rebaudo@ird.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rebaudo",
                    family = "Francois",
                    role = c("aut", "cre"),
                    email = "francois.rebaudo@ird.fr",
                    comment = "IRD, UMR EGCE, IRD, CNRS, Univ. ParisSaclay")
as necessary.
Package required but not available: ‘entropart’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fdatest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tengyao Wang <t.wang59@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tengyao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "t.wang59@lse.ac.uk"),
               person(given = "Bertille",
                      family = "Follain",
                      role = "aut"),
               person(given = "Richard",
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Pedro Fonseca <pedro.teles.fonseca@phd.iseg.ulisboa.pt>’

Package CITATION file contains call(s) to old-style citEntry().  Please
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Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "maloneypatr",
                      role = c("aut", "cre")),
               person(given = "Irucka",
                      family = "Embry",
                      role = c("aut", "ctb", "cre"),
                      email = "iembry@ecoccs.com"))
as necessary.
Maintainer: ‘Pablo Barbera <pbarbera@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Barbera",
                      role = c("aut", "cre"),
                      email = "pbarbera@usc.edu"),
               person(given = "Tiago",
                      family = "Dantas",
                      role = "ctb"),
               person(given = "Jonne",
                      family = "Guyt",
                      role = "ctb"))
as necessary.
Maintainer: ‘Alicja Wolny--Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny--Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Michal",
                      family = "Trzesiok",
                      role = "aut"))
as necessary.
Package required but not available: ‘DHARMa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'intamap', 'automap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘automap’

Package suggested but not available for checking: ‘psgp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jun Park <jun.park@alumni.iu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giorgos",
                      family = "Bakoyannis",
                      role = "aut",
                      email = "gbakogia@iu.edu"),
               person(given = "Jun",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "jun.park@alumni.iu.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rudradev",
                      family = "Sengupta",
                      role = c("aut", "cre"),
                      email = "rudradev.sengupta@uhasselt.be"),
               person(given = c("Nolen", "Joy"),
                      family = "Perualila",
                      role = "aut"))
as necessary.
Packages required but not available:
  'janitor', 'gtsummary', 'ggpubr', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kasia Kulma <katarzyna.kulma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasia",
                    family = "Kulma",
                    role = c("aut", "cre"),
                    email = "katarzyna.kulma@gmail.com")
as necessary.
Package required but not available: ‘sna’

Package suggested but not available for checking: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Babatunde Alli <babatunde.alli@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babatunde",
                    family = "Alli",
                    role = c("aut", "cre"),
                    email = "babatunde.alli@mail.mcgill.ca")
as necessary.
Packages required but not available: 'car', 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘jtools’

Package suggested but not available for checking: ‘broom.mixed’

Packages which this enhances but not available for checking:
  'brms', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Justin Esarey <justin@justinesarey.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justin",
                      family = "Esarey",
                      role = c("aut", "cre"),
                      email = "justin@justinesarey.com"),
               person(given = c("Jane", "Lawrence"),
                      family = "Sumner",
                      role = "aut"))
as necessary.
Packages required but not available: 'FactoMineR', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fei Zhou <fei.zhou@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fei",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "fei.zhou@outlook.com"),
               person(given = "Jie",
                      family = "Ren",
                      role = "aut"),
               person(given = "Yuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xiaoxi",
                      family = "Li",
                      role = "aut"),
               person(given = "Cen",
                      family = "Wu",
                      role = "aut"),
               person(given = "Yu",
                      family = "Jiang",
                      role = "aut"))
as necessary.
Maintainer: ‘Olivier LE GOFF <olivierlegoff1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Olivier", "LE"),
                    family = "GOFF",
                    role = c("aut", "cre"),
                    email = "olivierlegoff1@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘AER’

Package suggested but not available for checking: ‘mlr3extralearners’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
sh: 1: cannot create /tmp/RtmpBW5tMd/xshell2039f877f5e291: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpBW5tMd/xshell2039f877f5e291': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Bastian Becker <bastian.becker@bayer.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Bastian",
                      family = "Becker",
                      role = c("aut", "cre"),
                      email = "bastian.becker@bayer.com"),
               person(given = "Katharina",
                      family = "Mueller",
                      role = "aut"),
               person(given = "Hermann",
                      family = "Kulmann",
                      role = "aut"))
as necessary.
Maintainer: ‘Bastian Becker <bastian.becker@bayer.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bastian",
                      family = "Becker",
                      role = c("aut", "cre"),
                      email = "bastian.becker@bayer.com"),
               person(given = "Katharina",
                      family = "Mueller",
                      role = "aut"),
               person(given = "Hermann",
                      family = "Kulmann",
                      role = "aut"))
as necessary.
Packages required but not available: 'flextable', 'officer', 'moonBook'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michel Ballings <michel.ballings@GMail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
checkRd: (-1) remit.Rd:32: Lost braces
    32 | A data set to replicate the findings of Escrib\`{a}-Folch,
       |                                                 ^
checkRd: (-1) remit.Rd:38: Lost braces
    38 | Escrib\`{a}-Folch, A., Meseguer, C. and Wright, J. (2018), Remittances and Protest in Dictatorships. American Journal of Political Science, 62: 889-904. \doi{10.1111/ajps.12382}
       |         ^
Maintainer: ‘Zehang Richard Li <lizehang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zehang", "Richard"),
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizehang@gmail.com"),
               person(given = "Tyler",
                      family = "McCormick",
                      role = "aut"),
               person(given = "Sam",
                      family = "Clark",
                      role = "aut"),
               person(given = "Peter",
                      family = "Byass",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
sh: 1: cannot create /tmp/RtmpNf8igq/xshell209be62e534d6e: No space left on device
Warning in file(con, "r") :
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Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
checkRd: (-1) interval-internal.Rd:40: Lost braces
    40 | \item{dqfunc}{function, density of the results of the quantile function, e.g., function(x){dnorm(qnorm(x))} (used for 'general' scores, 
       |                                                                                           ^
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Kimihiro Noguchi <kimihiro.noguchi@wwu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'clinUtils', 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) decompose_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) fit_volume.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) generate_plots.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) generate_plots.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Jorge Luis Ojeda Cabrera <jojeda@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jorge", "Luis", "Ojeda"),
                    family = "Cabrera",
                    role = c("aut", "cre"),
                    email = "jojeda@unizar.es")
as necessary.
Maintainer: ‘Kerstin Johnsson <kerstin.johnsson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kerstin",
                      family = "Johnsson",
                      role = c("aut", "cre"),
                      email = "kerstin.johnsson@hotmail.com"),
               person(given = "Lund",
                      family = "University",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘intRinsic-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpUY1Nhf/file20320356b2dd37/generalized_ratios_distribution.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Adriaan M. Dokter <amd427@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adriaan", "M."),
                    family = "Dokter",
                    role = c("aut", "cre"),
                    email = "amd427@cornell.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) intRvals-package.Rd:60: Lost braces
    60 | B\'{e}dard, J. & Gauthier, G. 1986. Assessment of faecal output in geese. Journal of Applied Ecology, 23, 77-90.
       |    ^
checkRd: (-1) partition.Rd:64: Lost braces
    64 | Bates, D., M\"{a}chler, M., Bolker, B.M. & Walker, S.C. (2015). Fitting linear mixed-effects models using lme4. Journal of Statistical Software, 67, 1-48.
       |               ^
Packages required but not available:
  'PointedSDMs', 'fmesher', 'inlabru', 'blockCV'

Packages suggested but not available for checking: 'INLA', 'spatstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Caro <dcarov@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Caro",
                      role = c("aut", "cre"),
                      email = "dcarov@gmail.com"),
               person(given = "Przemyslaw",
                      family = "Biecek",
                      role = "aut",
                      email = "przemyslaw.biecek@gmail.com"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolai",
                    family = "Meinshausen",
                    role = c("aut", "cre"),
                    email = "meinshausen@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Marcus Rosenblatt <marcus.rosenblatt@fdm.uni-freiburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcus",
                    family = "Rosenblatt",
                    role = c("aut", "cre"),
                    email = "marcus.rosenblatt@fdm.uni-freiburg.de")
as necessary.
Maintainer: ‘Fred Hasselman <fred.hasselman@ru.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brandon M. Greenwell <greenwell.brandon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brandon", "M."),
                    family = "Greenwell",
                    role = c("aut", "cre"),
                    email = "greenwell.brandon@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hakon K. Gjessing <hakon.gjessing@uib.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hakon", "K."),
                    family = "Gjessing",
                    role = c("aut", "cre"),
                    email = "hakon.gjessing@uib.no")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/iNZightPlots.Rcheck/00install.out’ for details.
Packages required but not available: 'car', 'GGally', 'iNZightPlots'

Package suggested but not available for checking: ‘broom.helpers’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/iNZightTS.Rcheck/00install.out’ for details.
Maintainer: ‘John Wade <jjpwade2@illinois.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘f.influence.Rd’:
    https://doi.org/10.1080/09535319200000013
checkRd: (-1) f.influence.Rd:25: Lost braces; missing escapes or markup?
    25 | where F is the field of influence, k is order of influence, l_{ij} is the ith row and jth column element of the Leontief Inverse and -s indicates the sth element has been removed.
       |                                                               ^
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprEXZMn/file20c0971633ddf9/export.total.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'GSVA', 'survminer'

Packages suggested but not available for checking:
  'biomaRt', 'clusterProfiler', 'DOSE', 'easier', 'enrichplot',
  'factoextra', 'FactoMineR', 'ggpubr', 'Hmisc', 'msigdbr',
  'org.Hs.eg.db', 'org.Mm.eg.db', 'Seurat', 'sva', 'timeROC', 'webr',
  'WGCNA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jan Budczies <jan.budczies@med.uni-heidelberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jan",
                      family = "Budczies",
                      role = c("aut", "cre"),
                      email = "jan.budczies@med.uni-heidelberg.de"),
               person(given = "Eva",
                      family = "Romanovsky",
                      role = "aut"))
as necessary.
Maintainer: ‘David J. H. Shih <djh.shih@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J.", "H."),
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "djh.shih@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/iotables.Rcheck/00install.out’ for details.
Package required but not available: ‘ggalluvial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpAAh5O0/ltx20a3c54ffda232/setApiKey.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiBnTLs/file209e571530760e/lookupBilling.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Alexander Rossell Hayes <alexander@rossellhayes.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ian E. Fellows <ian@fellstat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ian", "E."),
                    family = "Fellows",
                    role = c("aut", "cre"),
                    email = "ian@fellstat.com")
as necessary.
Maintainer: ‘Jie-Huei Wang <jhwang@mail.fcu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie-Huei",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "jhwang@mail.fcu.edu.tw"),
               person(given = "Yi-Hau",
                      family = "Chen",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jemma Stachelek <jemma.stachelek@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘ipdw2.Rmd’ using rmarkdown

Quitting from ipdw2.Rmd:54-85 [avg_nearest_neigh]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'spatstat'
---
Backtrace:
    ▆
 1. └─base::library(spatstat)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ipdw2.Rmd' failed with diagnostics:
there is no package called 'spatstat'
--- failed re-building ‘ipdw2.Rmd’

SUMMARY: processing the following file failed:
  ‘ipdw2.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘cookbook.Rmd’ using rmarkdown
--- finished re-building ‘cookbook.Rmd’

--- re-building ‘intro_ipeaplot.Rmd’ using rmarkdown

Quitting from intro_ipeaplot.Rmd:62-73 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'geobr'
---
Backtrace:
    ▆
 1. └─base::library(geobr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'intro_ipeaplot.Rmd' failed with diagnostics:
there is no package called 'geobr'
--- failed re-building ‘intro_ipeaplot.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_ipeaplot.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne-Laure",
                      family = "Boulesteix",
                      role = c("aut", "cre"),
                      email = "boulesteix@ibe.med.uni-muenchen.de"),
               person(given = "Mathias",
                      family = "Fuchs",
                      role = "aut"),
               person(given = "Gerhard",
                      family = "Schulze",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander W Blocker <ablocker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alexander", "W"),
                    family = "Blocker",
                    role = c("aut", "cre"),
                    email = "ablocker@gmail.com")
as necessary.
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpSrHQjw/ltx2101275a0a1554', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSrHQjw/ltx2101275a0a1554/ipfCluster.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "simon.urbanek@r-project.org"),
               person(given = "Tobias",
                      family = "Wichtrey",
                      role = "aut",
                      email = "tobias@tarphos.de"))
as necessary.
checkRd: (-1) check_convergence.Rd:47: Lost braces
    47 | \code{conv_plot}: code{ipm} invisibly.
       |                       ^
checkRd: (-1) init_ipm.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:70-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) make_ipm.Rd:276: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:277-281: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:282-286: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:287-291: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:292-293: Lost braces in \itemize; \value handles \item{}{} directly
Error(s) in re-building vignettes:
  ...
--- re-building ‘age_x_size.Rmd’ using rmarkdown
--- finished re-building ‘age_x_size.Rmd’

--- re-building ‘density-dependence.Rmd’ using rmarkdown
--- finished re-building ‘density-dependence.Rmd’

--- re-building ‘general-ipms.Rmd’ using rmarkdown
--- finished re-building ‘general-ipms.Rmd’

--- re-building ‘index-notation.Rmd’ using rmarkdown
--- finished re-building ‘index-notation.Rmd’

Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpJkD60u/file218c5910ce23a3.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptNMSGX/file21a95f274908f9': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmptNMSGX/file21a95f274908f9': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Niklas Hohmann <Niklas.Hohmann@fau.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Niklas",
                    family = "Hohmann",
                    role = c("aut", "cre"),
                    email = "niklas.hohmann@fau.de")
as necessary.

The Description field contains
  (2019) <arXiv:1901.10754>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZbr1Ob/file21328e44e521ea': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpZbr1Ob/file21328e44e521ea': No such file or directory
Error in file(con, "r") : cannot open the connection
Note: skipping ‘tecator.Rmd’ due to unavailable dependencies: 'caret'
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jean-Benoit Rossel <jean-benoit.rossel@unisante.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Jean-Benoit"),
                      family = "Rossel",
                      role = "aut"),
               person(given = c("Prof.", "Valentin"),
                      family = "Rousson",
                      role = "aut"),
               person(given = c("Dr.", "Yves"),
                      family = "Eggli",
                      role = "aut"),
               person(given = "Jean-Benoit",
                      family = "Rossel",
                      role = "cre",
                      email = "jean-benoit.rossel@unisante.ch"))
as necessary.
Package required but not available: ‘logistf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rama Ranjan Panda<rrpanda.phd2018.cs@nitrr.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rama", "Ranjan"),
                      family = "Panda",
                      role = c("aut", "cre"),
                      email = "rrpanda.phd2018.cs@nitrr.ac.in"),
               person(given = c("Naresh", "Kumar"),
                      family = "Nagwani",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpgC0hqO/file2088e4534fb0ca/simPG1.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running examples in ‘ips-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: trimEnds
> ### Title: Trim Alignment Ends
> ### Aliases: trimEnds
> 
> ### ** Examples
> 
> # simple example alignment:
> x <- structure(list(nb = 5, seq = c("acaaggtaca", "-caaggtac-",
+ "acaaggtaca", "aca--gtaca", "-ccaggta--"), nam = LETTERS[1:5]),
+ .Names = c("nb", "seq", "nam"), class = "alignment")
> # convert to DNAbin:
> x <- as.DNAbin(x)
> # fill missing nucleotides:
> x <- trimEnds(x)
Error in trimEnds(x) : alignment contains less sequences then required
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpNVshC6/ltx21182176959ca9/mrbayes.lset.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ana Perez-Gonzalez <anapg@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Maria"),
                      family = "Bianco",
                      role = "aut"),
               person(given = "Graciela",
                      family = "Boente",
                      role = "aut"),
               person(given = "Ana",
                      family = "Perez-Gonzalez",
                      role = c("aut", "cre"),
                      email = "anapg@uvigo.es"))
as necessary.
Running examples in ‘IPWboxplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: IPW.ASYM.boxplot
> ### Title: Boxplot adapted to skewness and missing values
> ### Aliases: IPW.ASYM.boxplot
> ### Keywords: quantile boxplot missing inverse probability weighted
> 
> ### ** Examples
> 
> 
> ## A real data example
> 
> 
> library(mice)
Error in library(mice) : there is no package called ‘mice’
Execution halted
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = "Rui",
                      family = "Wang",
                      role = "aut",
                      email = "rwang@hsph.harvard.edu"))
as necessary.
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Maintainer: ‘Eufrasio de A. Lima Neto <eufrasio@de.ufpb.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eufrasio", "de", "A.", "Lima", "Neto", "/", "Claudio", "A.", "V.", "de", "Souza", "Filho", "/", "Pedro", "R.", "D."),
                      family = "Marinho",
                      role = "aut"),
               person(given = c("Eufrasio", "de", "A.", "Lima"),
                      family = "Neto",
                      role = "cre",
                      email = "eufrasio@de.ufpb.br"))
as necessary.
Maintainer: ‘Jelena Kovacic <jkovacic@imi.hr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jelena",
                    family = "Kovacic",
                    role = c("aut", "cre"),
                    email = "jkovacic@imi.hr")
as necessary.
Package required but not available: ‘rstanarm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘example-scripts.Rmd’ using rmarkdown
--- finished re-building ‘example-scripts.Rmd’

--- re-building ‘getting-started-with-irg.Rmd’ using rmarkdown

Quitting from getting-started-with-irg.Rmd:125-180 [functGraphViz]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'DiagrammeR'
---
Backtrace:
    ▆
 1. └─base::library(DiagrammeR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting-started-with-irg.Rmd' failed with diagnostics:
there is no package called 'DiagrammeR'
--- failed re-building ‘getting-started-with-irg.Rmd’

SUMMARY: processing the following file failed:
  ‘getting-started-with-irg.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpMkn9zB/Rf209b886e35bf7d': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiOSPC4/file20a68244e9949f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpiOSPC4/file20a68244e9949f': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kilem L. Gwet <gwet@agreestat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kilem", "L."),
                      family = "Gwet",
                      role = c("aut", "cre"),
                      email = "gwet@agreestat.com"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
cannot open the connection
problem found in ‘pvals.ICC2a.nointer.Rd’
Maintainer: ‘Markus Brueckl <markus.brueckl@tu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Brueckl",
                      role = c("aut", "cre"),
                      email = "markus.brueckl@tu-berlin.de"),
               person(given = "Florian",
                      family = "Heuer",
                      role = c("aut", "trl")))
as necessary.
Maintainer: ‘Matthias Gamer <m.gamer@uke.uni-hamburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthias",
                      family = "Gamer",
                      role = c("aut", "cre"),
                      email = "m.gamer@uke.uni-hamburg.de"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "aut",
                      email = "jim@bitwrit.com.au"),
               person(given = c("Ian", "Fellows", "Puspendra", "Singh"),
                      family = "<puspendra.pusp22@gmail.com>",
                      role = "aut",
                      email = "puspendra.pusp22@gmail.com"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/irtawsi.Rcheck/00install.out’ for details.
Maintainer: ‘Huseyin Yildiz <huseyinyildiz35@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Huseyin",
                    family = "Yildiz",
                    role = c("aut", "cre"),
                    email = "huseyinyildiz35@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction_synth.Rmd’ using rmarkdown

Quitting from introduction_synth.Rmd:21-38 [packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction_synth.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘introduction_synth.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction_synth.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘irt-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpaKacmP/file2102951fe63456/sub-subset-Response_set-numeric-missing-method.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Ivailo Partchev <partchev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaojun",
                      family = "Li",
                      role = "aut"),
               person(given = "Ivailo",
                      family = "Partchev",
                      role = c("aut", "cre"),
                      email = "partchev@gmail.com"),
               person(given = "Paul",
                      family = "De Boeck",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘DiagrammeR’

Package suggested but not available for checking: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bjorn Andersson <bjoern.h.andersson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjorn",
                    family = "Andersson",
                    role = c("aut", "cre"),
                    email = "bjoern.h.andersson@gmail.com")
as necessary.
Maintainer: ‘W. Kyle Hamilton <kyle.hamilton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "Kyle"),
                      family = "Hamilton",
                      role = c("aut", "cre"),
                      email = "kyle.hamilton@gmail.com"),
               person(given = "Atsushi",
                      family = "Mizumoto",
                      role = "aut",
                      email = "atsushi@mizumot.com"))
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Running massageExamples to create ‘isa2-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpTnlrrV/file20b5f67bf6421c/robustness.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘cw_democracy.Rd’, ‘cw_gdppop.Rd’, ‘cw_gw_panel.Rd’, ‘cw_system.Rd’, ‘gw_cw_panel.Rd’, ‘gw_democracy.Rd’
Maintainer: ‘Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicole Schwitter <Nicole.Schwitter.1@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicole",
                    family = "Schwitter",
                    role = c("aut", "cre"),
                    email = "nicole.schwitter.1@warwick.ac.uk")
as necessary.
Maintainer: ‘Claus Ekstrom <ekstrom@sund.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Claus", "Thorn"),
                      family = "Ekstrøm",
                      role = "aut",
                      email = "ekstrom@sund.ku.dk"),
               person(given = "Helle",
                      family = "Sørensen",
                      role = "aut",
                      email = "helle@math.ku.dk"),
               person(given = "Claus",
                      family = "Ekstrom",
                      role = "cre",
                      email = "ekstrom@sund.ku.dk"))
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudia",
                      family = "van Borkulo",
                      role = "aut"),
               person(given = c("Sacha", "Epskamp;", "with", "contributions", "from", "Alexander"),
                      family = "Robitzsch",
                      role = "aut"),
               person(given = c("Mihai", "Alexandru"),
                      family = "Constantin",
                      role = "aut"),
               person(given = "Sacha",
                      family = "Epskamp",
                      role = "cre",
                      email = "mail@sachaepskamp.com"))
as necessary.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'simlandr'

Package suggested but not available for checking: ‘IsingFit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mehmet Suzen <mehmet.suzen@physics.org>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpsUKYg3/Rf207d441c741272': No space left on device
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpCXK64j/file20b6026a178761': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpCXK64j/file20b6026a178761': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gareth",
                      family = "James",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Witten",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Gunjan Bansal <gunjan.1512@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adarsh",
                      family = "Anand",
                      role = "aut"),
               person(given = "Gunjan",
                      family = "Bansal",
                      role = c("aut", "cre"),
                      email = "gunjan.1512@gmail.com"))
as necessary.
Maintainer: ‘Hui Xie <huixie@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Xie",
                      role = c("aut", "cre"),
                      email = "huixie@uic.edu"),
               person(given = "Weihua",
                      family = "Gao",
                      role = "aut"),
               person(given = "Baodong",
                      family = "Xing",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Heitjan",
                      role = "aut"),
               person(given = "Donald",
                      family = "Hedeker",
                      role = "aut"),
               person(given = "Chengbo",
                      family = "Yuan",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iso8601todataframe.R’
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Justin Mathias <justin.m.mathias@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Justin",
                    family = "Mathias",
                    role = c("aut", "cre"),
                    email = "justin.m.mathias@gmail.com")
as necessary.
Maintainer: ‘Sandra Barragan <sandra.barragan@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: http:://www.cyclebase.org
    From: inst/doc/isocir.pdf
    Message: Invalid URL: missing authority part
Maintainer: ‘Mike Cheng <mikefc@coolbutuseless.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Alexander Henzi <henzi.alexander@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  See Henzi, Ziegel, Gneiting (2020) <arXiv:1909.03725>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Caj Neubauer <caj.neubauer@colorado.edu>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpMyfOdP/file238ebe3ed3ca33': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpMyfOdP/file238ebe3ed3ca33': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Rolf Turner <rolfturner@posteo.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "rolfturner@posteo.net")
as necessary.
Maintainer: ‘Patrick Mair <mair@fas.harvard.edu>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Mary Meyer <meyer@stat.colostate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mary", "C"),
                      family = "Meyer",
                      role = "aut"),
               person(given = "Jiwen",
                      family = "Wu",
                      role = "aut"),
               person(given = c("Jean", "D."),
                      family = "Opsomer",
                      role = "aut"),
               person(given = "Mary",
                      family = "Meyer",
                      role = "cre",
                      email = "meyer@stat.colostate.edu"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Uwe Block <u.block.mz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Uwe",
                      family = "Block",
                      role = c("aut", "cre"),
                      email = "u.block.mz@googlemail.com"),
               person(given = c("using", "an", "algorithm", "by", "Hatto"),
                      family = "von Hatzfeld",
                      role = "aut",
                      email = "hatto@salesianer.de"))
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ibd’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Manuel M. Müller <mm2559@cam.ac.uk>’

The Description field contains
  Reeve, Cannings and Samworth (2023) <arXiv:2305.04852v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Elena Gradi <elenaagradi@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘datamods’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luiz Henrique Keng Queiroz Junior <keng@ufg.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luiz", "Henrique", "Keng", "Queiroz"),
                      family = "Junior",
                      role = c("aut", "cre"),
                      email = "keng@ufg.br"),
               person(given = c("Vitor", "Mendes"),
                      family = "de Oliveira",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/vitor-mendes-iq/iSTATS
which should likely be
  https://github.com/vitor-mendes-iq/iSTATS/issues
instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘allexercises.R’ [3s/4s]
  Comparing ‘allexercises.Rout’ to ‘allexercises.Rout.save’ ...
180c180
< V = 13858, p-value = 4.225e-14
---
> V = 9283.5, p-value = 2.075e-13
471c471
< V = 0, p-value = 0.0452
---
> V = 0, p-value = 0.05906
  Running ‘allscripts.R’ [3s/4s]
  Comparing ‘allscripts.Rout’ to ‘allscripts.Rout.save’ ... OK
Maintainer: ‘Rebecca Steorts <beka@stat.duke.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘italy08.Rd’:
    \keyword{datasets,}
    \keyword{linkage,}
  File ‘italy10.Rd’:
    \keyword{datasets,}
    \keyword{linkage,}
Maintainer: ‘Michele Dalponte <michele.dalponte@fmach.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michele",
                    family = "Dalponte",
                    role = c("aut", "cre"),
                    email = "michele.dalponte@fmach.it")
as necessary.
Maintainer: ‘Cengiz Zopluoglu <cen.zop@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cengiz",
                    family = "Zopluoglu",
                    role = c("aut", "cre"),
                    email = "cen.zop@gmail.com")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Cyclops’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjoern",
                    family = "Bornkamp",
                    role = c("aut", "cre"),
                    email = "bbnkmp@mail.de")
as necessary.
Maintainer: ‘John A. Ramey <johnramey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "A."),
                      family = "Ramey",
                      role = c("aut", "cre"),
                      email = "johnramey@gmail.com"),
               person(given = "Kayla",
                      family = "Schaefer",
                      role = "aut",
                      email = "kschaefer.tx@gmail.com"))
as necessary.
Maintainer: ‘Steve Weston <stephen.b.weston@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steve",
                      family = "Weston",
                      role = c("aut", "cre"),
                      email = "stephen.b.weston@gmail.com"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "aut"))
as necessary.
Maintainer: ‘Matthew Smith <matt_smith.90@hotmail.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Smith",
                    role = c("aut", "cre"),
                    email = "matt_smith.90@hotmail.co.uk")
as necessary.
Packages required but not available: 'xergm.common', 'GGally', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nanne Aben <nanne.aben@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nanne",
                    family = "Aben",
                    role = c("aut", "cre"),
                    email = "nanne.aben@gmail.com")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Patrick English <p.english@exeter.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "English",
                    role = c("aut", "cre"),
                    email = "p.english@exeter.ac.uk")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_conservation_status.R’ ‘get_vernacularname.R’
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘rsample’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yiqing Xu <yiqingxu@stanford.edu>’

The Description field contains
  <arXiv:2303.11399>, including bootstrapped confidence intervals,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AER’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ivreg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hyunseung Kang <hyunseung@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyunseung",
                      family = "Kang",
                      role = c("aut", "cre"),
                      email = "hyunseung@stat.wisc.edu"),
               person(given = "Yang",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Qingyuan",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Dylan",
                      family = "Small",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘ivmodel-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp3hslRi/file21cbee6b56a828/ivmodelFormula.R': No space left on device
Execution halted
 NONE
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘rhalton.Rd’, ‘runCplexAPI.Rd’, ‘runGurobi.Rd’, ‘runLpSolveAPI.Rd’, ‘runMosek.Rd’, ‘sOls1d.Rd’, ‘sOls2d.Rd’, ‘sOls3.Rd’, ‘sOlsSplines.Rd’, ‘sTsls.Rd’, ‘sTslsSplines.Rd’, ‘sWald.Rd’, ‘selectViolations.Rd’, ‘splineInt.Rd’, ‘splineUpdate.Rd’, ‘splinesBasis.Rd’, ‘statusString.Rd’, ‘subsetclean.Rd’, ‘summary.ivmte.Rd’, ‘symat.Rd’, ‘tsls.Rd’, ‘uSplineBasis.Rd’, ‘uSplineInt.Rd’, ‘unstring.Rd’, ‘vecextract.Rd’, ‘wAttSplines.Rd’, ‘wate1.Rd’, ‘watt1.Rd’, ‘watu1.Rd’, ‘weights.Rd’, ‘wgenlate1.Rd’, ‘whichforlist.Rd’, ‘wlate1.Rd’
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bootnet', 'psychonetrics', 'graphicalVAR', 'networktools', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘relation-locate.Rd’, ‘vector-count.Rd’, ‘vector-detect-pairwise.Rd’, ‘vector-detect.Rd’, ‘vector-locate.Rd’
Maintainer: ‘Arvid Sjolander <arvid.sjolander@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arvid",
                      family = "Sjolander",
                      role = c("aut", "cre"),
                      email = "arvid.sjolander@ki.se"),
               person(given = "Elisabeth",
                      family = "Dahlqwist",
                      role = "aut"),
               person(given = "Torben",
                      family = "Martinussen",
                      role = "aut"))
as necessary.
Maintainer: ‘Tri Ha Minh Nguyen <tringuyen_2023@depauw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tri", "Ha", "Minh", "Nguyen", "Jyotirmoy", "Sarkar", "Mamunur"),
                      family = "Rashid",
                      role = "aut"),
               person(given = c("Tri", "Ha", "Minh"),
                      family = "Nguyen",
                      role = "cre",
                      email = "tringuyen_2023@depauw.edu"))
as necessary.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Heng",
                      family = "Shu",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘jaatha-evolution.Rmd’ using rmarkdown
--- finished re-building ‘jaatha-evolution.Rmd’

--- re-building ‘jaatha-intro.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpMlF7a0/Rf2195031bbbc37a': No space left on device

Quitting from jaatha-intro.Rmd:126-128 [create_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from jaatha-intro.Rmd:126-128 [create_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'jaatha-intro.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘jaatha-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘jaatha-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Running massageExamples to create ‘jackalope-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp6aCNsx/file21625156aa00b6/create_haplotypes.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘jackalope-intro.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpauI4s5/Rf2184061b522bbe': No space left on device

Quitting from jackalope-intro.Rmd:340-343 [examples-phylogeny-tree]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from jackalope-intro.Rmd:340-343 [examples-phylogeny-tree]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'jackalope-intro.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘jackalope-intro.Rmd’

--- re-building ‘sub-models.Rmd’ using rmarkdown
--- finished re-building ‘sub-models.Rmd’

SUMMARY: processing the following file failed:
  ‘jackalope-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Maintainer: ‘Dmitry Prokopenko <dmitry.prokopenko@uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dmitry",
                    family = "Prokopenko",
                    role = c("aut", "cre"),
                    email = "dmitry.prokopenko@uni-bonn.de")
as necessary.
Maintainer: ‘Klaus Nordhausen <klausnordhausenR@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: http: //CRAN.R-project.org/package=JADE
    From: inst/doc/JADE-BSSasymp.pdf
    Message: Invalid URL: missing authority part
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘cell_surv.df.Rd’, ‘chocolate.df.Rd’, ‘cooling.df.Rd’, ‘getModel.Rd’, ‘gustafson.df.Rd’, ‘hedgehog.growth.df.Rd’, ‘hedgehog.survival.df.Rd’
Fatal error: cannot create 'R_TempDir'
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(jagstargets)
  > 
  > test_check("jagstargets")
  Saving _problems/test-utils_deprecate-8.R
  [ FAIL 1 | WARN 0 | SKIP 16 | PASS 38 ]
  
  ══ Skipped tests (16) ══════════════════════════════════════════════════════════
  • On CRAN (16): 'test-tar_jags.R:10:3', 'test-tar_jags.R:153:3',
    'test-tar_jags.R:185:3', 'test-tar_jags_df.R:8:3',
    'test-tar_jags_example_file.R:4:3', 'test-tar_jags_rep_dic.R:10:3',
    'test-tar_jags_rep_dic.R:129:3', 'test-tar_jags_rep_draws.R:10:3',
    'test-tar_jags_rep_draws.R:129:3', 'test-tar_jags_rep_draws.R:174:3',
    'test-tar_jags_rep_summary.R:10:3', 'test-tar_jags_rep_summary.R:143:3',
    'test-tar_jags_rep_summary.R:178:3', 'test-tar_jags_rep_summary.R:222:3',
    'test-tar_jags_rep_summary.R:244:3', 'test-utils_data.R:23:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-utils_deprecate.R:1:1'): (code run outside of `test_that()`) ───
  Error in `setwd(dir)`: cannot change working directory
  Backtrace:
      ▆
   1. └─targets::tar_dir(...)
   2.   ├─base::eval(parse(text = "setwd(dir)", keep.source = FALSE))
   3.   │ └─base::eval(parse(text = "setwd(dir)", keep.source = FALSE))
   4.   └─base::setwd(dir)
  
  [ FAIL 1 | WARN 0 | SKIP 16 | PASS 38 ]
  Error:
  ! Test failures.
  Warning message:
  In dir.create(path, recursive = TRUE) :
    cannot create dir '/tmp/RtmpYjNW7m/file21bfdc543c6db6', reason 'No space left on device'
  Execution halted
Maintainer: ‘Ken Kellner <contact@kenkellner.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Sam Firke <samuel.firke@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/janitor.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘janusplot.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpaiTsT2/Rf228b6b2a5bda66': No space left on device

Quitting from janusplot.Rmd:263-273 [derivs-fit]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from janusplot.Rmd:263-273 [derivs-fit]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'janusplot.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘janusplot.Rmd’

--- re-building ‘shape-recognition-sensitivity.Rmd’ using rmarkdown
--- finished re-building ‘shape-recognition-sensitivity.Rmd’

SUMMARY: processing the following file failed:
  ‘janusplot.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@R-project.org>’

Package has FOSS license, installs .class/.jar but has no 'java' directory.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Maintainer: ‘Noelia Otero <noeli1680@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Noelia",
                    family = "Otero",
                    role = c("aut", "cre"),
                    email = "noeli1680@gmail.com")
as necessary.
Maintainer: ‘Shahla Faisal <shahla_ramzan@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shahla",
                    family = "Faisal",
                    role = c("aut", "cre"),
                    email = "shahla_ramzan@yahoo.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘jdenticon.R’
Maintainer: ‘Masashi Okada <okadaalgorithm@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: okadaalgorithm@gmail.com
    From: inst/doc/Jdmbs-vignette.pdf
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carl Suster <carl.suster@sydney.edu.au>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Running massageExamples to create ‘jentre-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpAZlQM3/file2182706f1b0ccb/elink.R': No space left on device
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/jfa.Rcheck/00install.out’ for details.
Running examples in ‘JFE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: durbinH
> ### Title: calculate Sortino Ratio of performance over downside risk
> ### Aliases: durbinH
> 
> ### ** Examples
> 
> 
>   data(macrodata)
>   y=ts(macrodata[,"OECD"],start=c(1961,1),freq=12) #OECD business cycle index
> 
>  out1=dynlm::dynlm(y~L(y,1)+season(y)+trend(y))
Error in loadNamespace(x) : there is no package called ‘dynlm’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Markus Helbig <mhelbig81@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Helbig",
                      role = c("aut", "cre"),
                      email = "mhelbig81@googlemail.com"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "aut"),
               person(given = "Ian",
                      family = "Fellows",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp1704pW/Rf21628f158bca90': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘jipApprox-Ex.R’ failed
The error occurred in:

Fatal error: cannot create 'R_TempDir'
Maintainer: ‘James Balamuta <balamut2@illinois.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘julia_setup_ok.Rd’, ‘make_jlmer_spec.Rd’, ‘permute_by_predictor.Rd’, ‘permute_timewise_statistics.Rd’, ‘reexports.Rd’, ‘to_jlmer.Rd’, ‘walk_threshold_steps.Rd’
Package required but not available: ‘StepReg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘jmastats-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpDjFIfA/file225fa22c6f25b6/pivot_tide_level.R': No space left on device
Execution halted
 NONE
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp75cO8T/Rf2182e3695b9d90': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FastJM', 'rstanarm', 'jmBIG'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rstanarm', 'FastJM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ka Yui Karl Wu <karlwuky@suss.edu.sg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ka", "Yui", "Karl"),
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "karlwuky@suss.edu.sg")
as necessary.
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                          ^
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                                                                               ^
Maintainer: ‘J. Patrick Meyer <meyerjp3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("J.", "Patrick"),
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "support@itemanalysis.com")
as necessary.
Packages required but not available: 'caret', 'pec'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zeng Xianli <a0123862@u.nus.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeng",
                      family = "Xianli",
                      role = c("aut", "cre"),
                      email = "a0123862@u.nus.edu"),
               person(given = "Hang",
                      family = "Weiqiang",
                      role = "aut",
                      email = "e0010758@u.nus.edu"))
as necessary.
Maintainer: ‘TszKin Julian Chan <ctszkin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("TszKin", "Julian"),
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "ctszkin@gmail.com")
as necessary.
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Steven T. Garren <GARRENST@JMU.EDU>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "T."),
                    family = "Garren",
                    role = c("aut", "cre"),
                    email = "garrenst@jmu.edu")
as necessary.
Maintainer: ‘Jonathon Love <jon@thon.cc>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Jonathon Love <jon@thon.cc>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'car', 'GGally', 'afex'

Packages suggested but not available for checking: 'exact2x2', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘jmvReadWrite-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: transform_vars_omv
> ### Title: Transform skewed variables (aiming at they conform to a normal
> ###   distribution) in .omv-files for the statistical spreadsheet 'jamovi'
> ###   (<https://www.jamovi.org>)
> ### Aliases: transform_vars_omv
> 
> ### ** Examples
> 
> # generate skewed variables
> set.seed(335)
> dtaInp <- data.frame(MP = rnorm(1000) * 1e-1 + rexp(1000, 2) * (1 - 1e-1),
+                      MN = rnorm(1000) * 1e-1 - rexp(1000, 2) * (1 - 1e-1),
+                      SP = rnorm(1000) * 1e-2 + rexp(1000, 2) * (1 - 1e-2),
+                      SN = rnorm(1000) * 1e-2 - rexp(1000, 2) * (1 - 1e-2),
+                      EP = rnorm(1000) * 1e-4 + rexp(1000, 2) * (1 - 1e-4),
+                      EN = rnorm(1000) * 1e-4 - rexp(1000, 2) * (1 - 1e-4))
> jmv::descriptives(data = dtaInp, skew = TRUE, sw = TRUE)
Error in loadNamespace(x) : there is no package called ‘jmv’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Markus Burkhardt <markus.burkhardt@psychologie.tu-chemnitz.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘TODAM2.Rd’:
    https://doi.org/10.1006/jmps.2000.1339
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maciej Beręsewicz <maciej.beresewicz@ue.poznan.pl>’

The Description field contains
  details <arXiv:2308.13281>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takeshi",
                    family = "Emura",
                    role = c("aut", "cre"),
                    email = "takeshiemura@gmail.com")
as necessary.
cannot open the connection
problem found in ‘cmprskCox.reg.Rd’
Maintainer: ‘Cedric Gouy-Pailler <cedric.gouypailler@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cedric",
                    family = "Gouy-Pailler",
                    role = c("aut", "cre"),
                    email = "cedric.gouypailler@gmail.com")
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Error: inferior call failed
Execution halted
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matteo Quartagno <m.quartagno@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matteo",
                      family = "Quartagno",
                      role = c("aut", "cre"),
                      email = "m.quartagno@ucl.ac.uk"),
               person(given = "James",
                      family = "Carpenter",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Johannes Breidenbach <job@nibio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Breidenbach",
                    role = c("aut", "cre"),
                    email = "job@nibio.no")
as necessary.
Running massageExamples to create ‘journalR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp4UCQ4d/file21d7366739fe8c/style_lancet.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Ashwini Maurya <mauryaas@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashwini",
                    family = "Maurya",
                    role = c("aut", "cre"),
                    email = "mauryaas@msu.edu")
as necessary.
Package required but not available: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Daniel R. Miranda-Esquivel <dmiranda@uis.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "R."),
                    family = "Miranda-Esquivel",
                    role = c("aut", "cre"),
                    email = "dmiranda@uis.edu.co")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Output for data("taxon1", package = "jrich"):
  Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'factoextra', 'bluster'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Navid Ahmadinejad <navidfr@asu.edu>’

The Description field contains
  <arXiv:2109.01306>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flextable', 'geepack', 'GGally', 'ggpubr', 'haven', 'Hmisc', 'jskm',
  'jstable', 'labelled', 'officer', 'rvg', 'timeROC', 'riskRegression'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mauricio Santelices <m.santelicesa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauricio",
                    family = "Santelices",
                    role = c("aut", "cre"),
                    email = "m.santelicesa@gmail.com")
as necessary.
Packages required but not available:
  'geepack', 'labelled', 'tableone', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘broom.mixed’

Packages suggested but not available for checking: 'pbkrtest', 'weights'

Packages which this enhances but not available for checking:
  'brms', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stephen H-T. Lihn <stevelihn@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘jubilee-package.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘jubilee.ols.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘jubilee.predict.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘tri.wave-class.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘triangle.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘just.install.R’
Packages required but not available: 'ggpubr', 'mice'

Package suggested but not available for checking: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
problem found in ‘read_delim_dumb.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpDeiSV9/file229a1fd8f0939/grapes-out-grapes.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Gerrit Eichner <gerrit.eichner@math.uni-giessen.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘kader.Rd’:
    http://dx.doi.org/10.1016/j.spl.2011.01.013
    http://dx.doi.org/10.1016/j.jspi.2012.03.011
    http://dx.doi.org/10.1080/10485252.2012.760737
Running examples in ‘kairos-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aoristic
> ### Title: Aoristic Analysis
> ### Aliases: aoristic aoristic-method aoristic,numeric,numeric-method
> ###   aoristic,ANY,missing-method
> 
> ### ** Examples
> 
> ## Data from Husi 2022
> data("loire", package = "folio")
> 
> ## Get time range
> loire_range <- loire[, c("lower", "upper")]
> 
> ## Calculate aoristic sum (normal)
> aorist_raw <- aoristic(loire_range, step = 50, weight = FALSE)
> plot(aorist_raw, col = "grey")
> 
> ## Calculate aoristic sum (weights)
> aorist_weighted <- aoristic(loire_range, step = 50, weight = TRUE)
> plot(aorist_weighted, col = "grey")
> 
> ## Calculate aoristic sum (weights) by group
> aorist_groups <- aoristic(loire_range, step = 50, weight = TRUE,
+                           groups = loire$area)
> plot(aorist_groups, flip = TRUE, col = "grey")
> image(aorist_groups)
> 
> ## Rate of change
> roc_weighted <- roc(aorist_weighted, n = 30)
> plot(roc_weighted)
Error in z[i, j, k, drop = drop] : incorrect number of dimensions
Calls: plot -> plot -> .local -> apply -> [ -> [ -> .local
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘event.Rmd’ using knitr

Quitting from event.Rmd:190-197 [event-plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `z[i, j, k, drop = drop]`:
! incorrect number of dimensions
---
Backtrace:
    ▆
 1. ├─base::plot(model, type = "activity", event = TRUE, select = 1:6)
 2. └─kairos::plot(model, type = "activity", event = TRUE, select = 1:6)
 3.   └─kairos (local) .local(x, ...)
 4.     └─base::apply(date_event, 1, function(x) all(is.na(x)))
 5.       ├─base::array(newX[, i], d.call, dn.call)
 6.       ├─newX[, i]
 7.       └─newX[, i]
 8.         └─aion (local) .local(x, i, j, ..., drop = drop)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'event.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘event.Rmd’

--- re-building ‘seriation.Rmd’ using knitr
--- finished re-building ‘seriation.Rmd’

SUMMARY: processing the following file failed:
  ‘event.Rmd’

Error: Vignette re-building failed.
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘lkmt.net.kernel.hsa04020.Rd’, ‘lkmt_test.Rd’, ‘lowrank_kernel-class.Rd’, ‘make_psd-matrix-method.Rd’
Running massageExamples to create ‘kangar00-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmphpZ31F/file22a54614d26b7a', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmphpZ31F/file22a54614d26b7a/GWASdata-class.R': No such file or directory
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp2oL3dj/ltx22b0a95525806c/gene_name_number-character-method.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Hannah Franziska Löchel <loechelh@mathematik.uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dominik",
                      family = "Eger",
                      role = "aut"),
               person(given = c("Hannah", "Franziska"),
                      family = "Löchel",
                      role = c("aut", "cre"),
                      email = "loechelh@mathematik.uni-marburg.de"))
as necessary.
Maintainer: ‘Muammer Albayrak <m.albayrak@ktu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Muammer",
                    family = "Albayrak",
                    role = c("aut", "cre"),
                    email = "m.albayrak@ktu.edu.tr")
as necessary.
Maintainer: ‘Frédéric Santos <frederic.santos@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frédéric",
                    family = "Santos",
                    role = c("aut", "cre"),
                    email = "frederic.santos@u-bordeaux.fr")
as necessary.
Maintainer: ‘Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Grabisch",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Kojadinovic",
                      role = c("aut", "cre"),
                      email = "ivan.kojadinovic@univ-pau.fr"),
               person(given = "Patrick",
                      family = "Meyer.",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘kappalab-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpyAb3t6/file22932a16ec1684/summary.superclass.capacity-class.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Huseyin Karamelikli <hakperest@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘car’

Packages suggested but not available for checking: 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) get.fit.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:57-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:61-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Package required but not available: ‘MVN’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpuMRXLB/file22a5913ac0e39f/project_top_down.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘getters.Rd’, ‘glms.Rd’, ‘is.shaq.Rd’, ‘kazaam-package.Rd’, ‘lm_coefs.Rd’, ‘matmult.Rd’, ‘norm.Rd’
Maintainer: ‘Thomas Wiemann <wiemann@uchicago.edu>’

The Description field contains
  (2023) <arXiv:2311.17021> for expectation function estimation
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Yves Ismael Ngounou Bakam <yvesngounou20@gmail.com>’

The Description field contains
  Bakam and Denys Pommeret (2022) <arXiv:2112.05623> and Yves I. Ngounou
  Bakam and Denys Pommeret (2022) <arXiv:2211.06338>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kristof Meers <kristof.meers+cran@kuleuven.be>’

The Description field contains
  detection proposed by Arlot et al. (2012) <arXiv:1202.3878> is then
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Karne Chaithanya Sai <karnechaithanyasai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Karne", "Chaithanya"),
                    family = "Sai",
                    role = c("aut", "cre"),
                    email = "karnechaithanyasai@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karne Chaithanya Sai <karnechaithanyasai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Karne", "Chaithanya"),
                    family = "Sai",
                    role = c("aut", "cre"),
                    email = "karnechaithanyasai@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpv94dQJ/Rf2298f61dbadd9': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Invalid citation information in ‘inst/CITATION’:
  Fatal error: cannot create 'R_TempDir'
Checking relative paths failed with message:
  inferior call failed
Error(s) in re-building vignettes:
  ...
--- re-building ‘example1.Rmd’ using rmarkdown

Quitting from example1.Rmd:331-367 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `mutate()`:
! could not find function "mutate"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'example1.Rmd' failed with diagnostics:
could not find function "mutate"
--- failed re-building ‘example1.Rmd’

--- re-building ‘fitting.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp7p7klU/Rf2337146414f62': No space left on device

Quitting from fitting.Rmd:186-188 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from fitting.Rmd:186-188 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fitting.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘fitting.Rmd’

Fatal error: cannot create 'R_TempDir'
--- re-building ‘outcomes.Rmd’ using rmarkdown
--- finished re-building ‘outcomes.Rmd’

--- re-building ‘structures.Rmd’ using rmarkdown
--- finished re-building ‘structures.Rmd’

SUMMARY: processing the following files failed:
  ‘example1.Rmd’ ‘fitting.Rmd’ ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Iago Giné-Vázquez <iago.gin-vaz@protonmail.com>’

The Description field contains
  in Arsalane Chouaib Guidoum (2020) <arXiv:2012.06102> [stat.CO]).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro.Rnw’ using Sweave
--- finished re-building ‘intro.Rnw’

--- re-building ‘kedd.Rnw’ using Sweave
Warning in optimize(fmlcv, c(lower, upper), tol = tol, maximum = TRUE) :
  Inf replaced by maximum positive value
Warning in optimize(fmlcv, c(lower, upper), tol = tol, maximum = TRUE) :
  Inf replaced by maximum positive value
Warning in plot.new() :
  Cannot open temporary file '/tmp/Rtmpz7cLEY/pdf22eccd77c2c87f' for compression (reason: No space left on device); compression has been turned off for this device
Warning in file() :
  cannot open file '/tmp/Rtmpz7cLEY/Rf22eccd72ce47a0': No space left on device
Error: processing vignette 'kedd.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘kedd.Rnw’

SUMMARY: processing the following file failed:
  ‘kedd.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Paavo Jumppanen<paavo.jumppanen@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paavo",
                    family = "Jumppanen",
                    role = c("aut", "cre"),
                    email = "paavo.jumppanen@csiro.au")
as necessary.
Maintainer: ‘Claudia Vitolo <cvitolodev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudia",
                      family = "Vitolo",
                      role = c("aut", "cre"),
                      email = "cvitolodev@gmail.com"),
               person(given = "Allan",
                      family = "Tucker",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Russell",
                      role = "aut"))
as necessary.

The Description field contains
  http://www.brunel.ac.uk/ife/britishcouncil). It refers to the
Please enclose URLs in angle brackets (<...>).
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mateusz Staniak <mateusz.staniak@math.uni.wroc.pl>’

The Description field contains
  Jasiulis-Gołdyn (2014) <arXiv:1412.0220>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘PRE.Rmd’ using rmarkdown

Quitting from PRE.Rmd:17-22 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'car'
---
Backtrace:
    ▆
 1. └─base::library(car)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PRE.Rmd' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘PRE.Rmd’

--- re-building ‘assessCOA.Rmd’ using rmarkdown
--- finished re-building ‘assessCOA.Rmd’

--- re-building ‘commonSampleSizes.Rmd’ using rmarkdown
--- finished re-building ‘commonSampleSizes.Rmd’

--- re-building ‘partialRegression.Rmd’ using rmarkdown
--- finished re-building ‘partialRegression.Rmd’

--- re-building ‘planSampleSize.Rmd’ using rmarkdown
--- finished re-building ‘planSampleSize.Rmd’

SUMMARY: processing the following file failed:
  ‘PRE.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Björn Andersson <bjoern.h.andersson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp6QJCuP/Rf22b3f94b0c806': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Tomasz Kalinowski <tomasz@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘op_histogram.Rd’, ‘op_hstack.Rd’, ‘op_identity.Rd’, ‘op_ifft2.Rd’, ‘op_imag.Rd’, ‘op_image_affine_transform.Rd’, ‘op_image_crop.Rd’, ‘op_leaky_relu.Rd’, ‘op_vectorize.Rd’, ‘op_vectorized_map.Rd’, ‘op_view_as_complex.Rd’, ‘op_view_as_real.Rd’, ‘op_vstack.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .............Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9mJiDi/file2c6e387c630114': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp9mJiDi/file2c6e387c630114': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'parsnip', 'recipes'

Packages suggested but not available for checking:
  'tidymodels', 'finetune', 'tune', 'workflows', 'rsample', 'probably'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Hoseung Song <hsong3@fredhutch.org>’

The Description field contains
  conditions.  Song, H. and Wu, M.C. (2023) <arXiv:2307.15268>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Maintainer: ‘Tymoteusz Wolodzko <twolodzko+kernelboot@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tymoteusz",
                    family = "Wolodzko",
                    role = c("aut", "cre"),
                    email = "twolodzko+kernelboot@gmail.com")
as necessary.
Maintainer: ‘Michel Ballings <Michel.Ballings@GMail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                          ^
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                                                                                                   ^
Package required but not available: ‘sparr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpIlvvVl/file228c995de45d20/kernreg.tune.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘kernreg-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpT1hT9c/file22911d249e6bd8', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpT1hT9c/file22911d249e6bd8/kern_reg.R': No such file or directory
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Brian McGuire <mcguirebc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Angelo",
                      family = "Mazza",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Punzo",
                      role = "aut"),
               person(given = "Brian",
                      family = "McGuire",
                      role = c("aut", "cre"),
                      email = "mcguirebc@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) subjOCCDIF.Rd:23: Lost braces
    23 | the scale on which to evaluate each subject. \code{stype = "ObsScore"} uses the subject's total score. \code{stype = "Theta"} uses the subject's rank on the \code{thetadist} scale. \code{stype = "ThetaML"} uses the maximum likelihood estimate for the subject on the \code{thetadist} scale. code{stype = "ScoreML"} uses the maximum likelihood estimate for the subject on the overall test score scale.
       |                                                                                                                                                                                                                                                                                                       ^
Packages required but not available: 'sparr', 'spatstat.linnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpv6HUjF/file234275366e37a2/dummy_var.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘kerntools-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp5k4u9o/file2355dc4b8fc30c/Procrustes.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  (2022) <arXiv:2206.01853>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpb0L5QA/ltx22a5286e1d91c4/kerseg2.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  <arXiv:2011.06127>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘kerTests-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpBQatQE/file22699b1929bb1c/kertests.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiaomeng Yuan <xiaomeng.yuan@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaomeng",
                      family = "Yuan",
                      role = c("aut", "cre"),
                      email = "xiaomeng.yuan@stjude.org"),
               person(given = "Chen",
                      family = "Li",
                      role = "aut"),
               person(given = "Hongying",
                      family = "Sun",
                      role = "aut"),
               person(given = "Li",
                      family = "Tang",
                      role = "aut"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"))
as necessary.
Package required but not available: ‘textstem’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Thoralf Mildenberger <mild@zhaw.ch>’

The Description field contains
  <arXiv:2308.13383>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Weihua An <weihua.an@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Weihua", "An;", "Yu-Hsin"),
                      family = "Liu",
                      role = "aut"),
               person(given = "Weihua",
                      family = "An",
                      role = "cre",
                      email = "weihua.an@emory.edu"))
as necessary.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpO9Tvr0/ltx229cbb682361b3/has_keypress_support.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Josh Gilfillan <joshua.i.gilfillan+keyringr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josh",
                    family = "Gilfillan",
                    role = c("aut", "cre"),
                    email = "joshua.i.gilfillan+keyringr@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpkR0W9a/Rf229cdf3a0e496a': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) useKeys.Rd:13: Lost braces; missing escapes or markup?
    13 | This function adds the {keys} dependencies to your application
       |                        ^
Maintainer: ‘Kyle Nickodem <kyle.nickodem@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kyle",
                      family = "Nickodem",
                      role = c("aut", "cre"),
                      email = "kyle.nickodem@gmail.com"),
               person(given = "Peter",
                      family = "Halpin",
                      role = "aut"))
as necessary.
Packages required but not available: 'caret', 'flextable', 'officer'

Package suggested but not available for checking: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Koohafkan",
                    role = c("aut", "cre"),
                    email = "michael.koohafkan@gmail.com")
as necessary.
Maintainer: ‘Isabelle Sanchez <isabelle.sanchez@inrae.fr>’

The Description field contains
  e-Print: <arXiv:2208.00961>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                          ^
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                                  ^
Maintainer: ‘Rou Zhong <zhong_rou@163.com>’

The Description field contains
  Shishi Liu, Haocheng Li, Jingxiao Zhang. (2021) <arXiv:2102.01286>. Rou
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'fdapace', 'fda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dennis Mayk <dm807@cantab.ac.uk>’

Reading Rd files failed with message:
  cannot open the connection
Checking relative paths failed with message:
  cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpkPXF4k/Rf2316a57a763daa': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpOY1sfR/file22b155abe34a0/download_graph.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpCDlsL1/file230ef8155ccf5f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpCDlsL1/file230ef8155ccf5f': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>’

Reading Rd files failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘crameri.Rmd’ using knitr

Quitting from crameri.Rmd:97-100 [crameri_div_vik]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/Rtmp9R4Dh6/file23c00c183f6404'
---
Backtrace:
    ▆
 1. ├─base::plot(vik(256))
 2. └─khroma:::plot.color_scheme(vik(256))
 3.   ├─graphics::plot(...)
 4.   └─graphics::plot.default(...)
 5.     └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'crameri.Rmd' failed with diagnostics:
could not open file '/tmp/Rtmp9R4Dh6/file23c00c183f6404'
--- failed re-building ‘crameri.Rmd’

--- re-building ‘khroma.Rmd’ using knitr
--- finished re-building ‘khroma.Rmd’

--- re-building ‘tol.Rmd’ using knitr
--- finished re-building ‘tol.Rmd’

SUMMARY: processing the following file failed:
  ‘crameri.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJUDg9f/file23dce12193bc69': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpJUDg9f/file23dce12193bc69': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Victor Moreno <v.moreno@iconcologia.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Victor",
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "v.moreno@iconcologia.net"),
               person(given = "Nilanjan",
                      family = "Chatterjee",
                      role = "aut"),
               person(given = "Bhramar",
                      family = "Mukherjee",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'parsnip', 'tune'

Packages suggested but not available for checking:
  'recipes', 'workflows', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pablo Rodriguez-Sanchez <pablo.rodriguez.sanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Rodriguez-Sanchez",
                      role = c("aut", "cre"),
                      email = "pablo.rodriguez.sanchez@gmail.com",
                      comment = "https://pabrod.github.io"),
               person(given = c("Sanne", "J.", "P."),
                      family = "van den Berg",
                      role = "aut",
                      comment = "https://www.wur.nl/en/Persons/Sanne-dr.-SJP-Sanne-van-den-Berg.htm"))
as necessary.
Fatal error: cannot create 'R_TempDir'
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘seriate_ui.Rd’, ‘ternary_server.Rd’, ‘ternary_ui.Rd’, ‘theme_ui.Rd’, ‘time_interval_server.Rd’, ‘time_interval_ui.Rd’, ‘update_checkbox_colnames.Rd’, ‘update_input.Rd’
Running ‘tinytest.R’ [17s/18s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if (requireNamespace("tinytest", quietly = TRUE)) {
  +   tinytest::test_package("kinesis")
  + }
  
  test_calendar.R...............    0 tests    
  test_calendar.R...............    0 tests    
  test_calendar.R...............    1 tests OK 0.4s
  
  test_coda.R...................    0 tests    
  test_coda.R...................    0 tests    
  test_coda.R...................    0 tests    
  test_coda.R...................   14 tests OK 
  test_coda.R...................   14 tests OK 
  test_coda.R...................   14 tests OK 
  test_coda.R...................   14 tests OK 
  test_coda.R...................   14 tests OK 
  test_coda.R...................   17 tests OK 15.0s
  
  test_coda_logratio.R..........    0 tests    
  test_coda_logratio.R..........    0 tests    
  test_coda_logratio.R..........    0 tests    
  test_coda_logratio.R..........    0 tests    
  test_coda_logratio.R..........    0 tests    
  test_coda_logratio.R..........    0 tests    
  test_coda_logratio.R..........    2 tests OK 
  test_coda_logratio.R..........    5 tests OK 0.2s
  
  test_coda_plot.R..............    0 tests    1ms
  
  test_coda_statistics.R........    0 tests    
  test_coda_statistics.R........    0 tests    
  test_coda_statistics.R........    0 tests    
  test_coda_statistics.R........    0 tests    
  test_coda_statistics.R........    0 tests    
  test_coda_statistics.R........    0 tests    Error: <NumericMatrix> instance initialization:
  * node stack overflow
  In addition: Warning message:
  In sprintf(tr_("<%s> instance initialization:\n%s"), class(object),  :
    restarting interrupted promise evaluation
  Execution halted
Package required but not available: ‘DNAmixturesLite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Muschelli <muschellij2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Muschelli",
                    role = c("aut", "cre"),
                    email = "muschellij2@gmail.com")
as necessary.
Maintainer: ‘Xiang Lyu <xianglyu@berkeley.edu>’

The Description field contains
  Nonparametric Additive Models”. arXiv preprint <arXiv:2105.11659>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Uwe Ligges <ligges@statistik.tu-dortmund.de>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘questionr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Alessandra Cabassi <alessandra.cabassi@mrc-bsu.cam.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘coca’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

Package suggested but not available for checking: ‘RGeostats’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ralf",
                      family = "Strobl",
                      role = "aut",
                      email = "rstrobl@ibe.med.uni-muenchen.de"),
               person(given = "Tobias",
                      family = "Verbeke",
                      role = "cre",
                      email = "tobias.verbeke@openanalytics.eu"))
as necessary.
Maintainer: ‘Zhen Huang <zh2395@columbia.edu>’

The Description field contains
  Sen (2022) <arXiv:2210.00634>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'factoextra', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Antoine Godichon-Baggioni <antoine.godichon_baggioni@upmc.fr>’

The Description field contains
  K-medians" <arXiv:2209.03597> Vardi, Y. and Zhang, C.-H. (2000). "The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/Rtmp55PkbC/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Aleksandr Sahakyan <sahakyanlab@cantab.net>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arthur",
                    family = "Allignol",
                    role = c("aut", "cre"),
                    email = "arthur.allignol@gmail.com")
as necessary.
Package required but not available: ‘pammtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chin Soon Lim <chinsoon12@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chin", "Soon"),
                    family = "Lim",
                    role = c("aut", "cre"),
                    email = "chinsoon12@hotmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chinsoon12/KnapsackSampling
which should likely be
  https://github.com/chinsoon12/KnapsackSampling/issues
instead.
Maintainer: ‘Alan Tseng <alan.tseng@alum.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Tseng",
                    role = c("aut", "cre"),
                    email = "alan.tseng@alum.utoronto.ca")
as necessary.
Packages required but not available: 'BiodiversityR', 'ggpubr'

Package suggested but not available for checking: ‘kadmin’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘knitr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rocco
> ### Title: Knit R Markdown using the classic Docco style
> ### Aliases: rocco
> 
> ### ** Examples
> 
> rocco_view = function(input) {
+     owd = setwd(tempdir())
+     on.exit(setwd(owd))
+     if (!file.exists(input))
+         return()
+     o = rocco(input, quiet = TRUE)
+     if (interactive())
+         browseURL(o)
+ }
> # knit these two vignettes using the docco style
> rocco_view(system.file("doc", "docco-classic.Rmd", package = "knitr"))
Warning in in_dir(input_dir(), expr) :
  You changed the working directory to /tmp/RtmpJ5xTSc (probably via setwd()). It will be restored to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/knitr/doc. See the Note section in ?knitr::knit
Warning in file(con, "w") :
  cannot open file 'docco-classic.md': No space left on device
Error in file(con, "w") : cannot open the connection
Calls: rocco_view ... knit2html -> knit -> write_utf8 -> writeLines -> file
Execution halted
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matthew Trupiano <matthew.trupiano.professional@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Trupiano",
                    role = c("aut", "cre"),
                    email = "matthew.trupiano.professional@gmail.com")
as necessary.

The Description field contains
  similarity metric please see Trupiano (2021) <arXiv:2112.06266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Castor", "Guisande"),
                      family = "Gonzalez",
                      role = c("aut", "cre"),
                      email = "castor@uvigo.es"),
               person(given = c("Jorge", "M."),
                      family = "Lobo",
                      role = "aut"))
as necessary.
checkRd: (-1) MapPolygon.Rd:20: Lost braces
    20 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
checkRd: (-1) SurveyQ.Rd:26: Lost braces
    26 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘kntnr-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Koboconnect.R’ ‘other.R’
Maintainer: ‘Mikhail V. Matz <matz@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "V."),
                    family = "Matz",
                    role = c("aut", "cre"),
                    email = "matz@utexas.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom.mixed', 'pbkrtest'

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Clemence Karmann <clemence.karmann@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

The Description field contains
  (2019) <arXiv:1907.03153>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric Golinko <egolinko@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eric",
                    family = "Golinko",
                    role = c("aut", "cre"),
                    email = "egolinko@gmail.com")
as necessary.
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘findk.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘findpolypeaks.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘genpolygon.Rd’:
    https://doi.org/10.24925/turjaf.v5i4.315-320.1056
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘kpeaks-package.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘plotpolygon.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘rmshoulders.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Jocelyn T. Chi <jtchi@ncsu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Matteo Provenzano <matteo.provenzano@alephdue.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matteo",
                    family = "Provenzano",
                    role = c("aut", "cre"),
                    email = "matteo.provenzano@alephdue.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpBjrJhs/Rf2329bd2f72ca19': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Warning in file() :
  cannot open file '/tmp/RtmpShxUrC/Rf23371965247d5d': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Maintainer: ‘Jason S. Byers <jaybyers55@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jason", "S."),
                      family = "Byers",
                      role = c("aut", "cre"),
                      email = "jaybyers55@gmail.com"),
               person(family = "Le Bao",
                      role = "aut"),
               person(given = "Jamie",
                      family = "Carson",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Gill",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘krige-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpmJT8SU/file237d7a7e79dca4/summary.krige.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Omar E. Olmedo <omareolmedo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Omar", "E."),
                    family = "Olmedo",
                    role = c("aut", "cre"),
                    email = "omareolmedo@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Warning in file() :
  cannot open file '/tmp/Rtmpf7heTe/Rf2343e237880e80': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
checkRd: (-1) EGIparallel.Rd:60: Lost braces; missing escapes or markup?
    60 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion.
       |                                    ^
checkRd: (-1) max_sur_parallel.Rd:29: Lost braces; missing escapes or markup?
    29 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion. 
       |                                    ^
checkRd: (-1) max_timse_parallel.Rd:30: Lost braces; missing escapes or markup?
    30 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion. 
       |                                    ^
checkRd: (-1) max_vorob_parallel.Rd:30: Lost braces; missing escapes or markup?
    30 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion.
       |                                    ^
checkRd: (-1) print_uncertainty_nd.Rd:72: Lost braces
    72 | Optional argument. When set to code{NULL} (default) the function performs the projections on plans spanned by each pair (i,j) of dimension. Otherwise, the argument is an array of size 2 corresponding to the dimensions spanning the (only) plan on which the projection is performed.
       |                                    ^
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Hughes",
                    role = c("aut", "cre"),
                    email = "drjphughesjr@gmail.com")
as necessary.
Maintainer: ‘Kridsadakorn Chaichoompu <kridsadakorn@biostatgen.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Predict_kernel_Ridge_MM.Rd:45: Lost braces; missing escapes or markup?
    45 |   and alpha_train is the BLUP of alpha for the model, i.e. alpha_train=Cov(alpha,Y_train)*Var(Y_train)^{-1}*(Y_train - E[Y_train]) }
       |                                                                                                        ^
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Dr. Fayed Alshammri <fayed333@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fayed",
                      family = "Alshammri",
                      role = "aut"),
               person(given = c("Dr.", "Fayed"),
                      family = "Alshammri",
                      role = "cre",
                      email = "fayed333@hotmail.com"))
as necessary.
Maintainer: ‘Phil Novack-Gottshall <pnovack-gottshall@ben.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Phil",
                      family = "Novack-Gottshall",
                      role = c("aut", "cre"),
                      email = "pnovack-gottshall@ben.edu"),
               person(given = c("Steve", "C."),
                      family = "Wang",
                      role = "aut"))
as necessary.
checkRd: (-1) ks_test_stat.Rd:14: Lost braces
    14 | are valid. See /code{LcKS} for accepted functions.}
       |                     ^
Maintainer: ‘Daniel Rodriguez <daniel.rodriguez.perez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Rodriguez",
                    role = c("aut", "cre"),
                    email = "daniel.rodriguez.perez@gmail.com")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpGskQLe/file2355d2e448eb5/kselection.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘ksformat-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpmNRvOl/file238fa1ebddd7/fmap_strata.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dimitrina", "S."),
                      family = "Dimitrova",
                      role = c("aut", "cre"),
                      email = "D.Dimitrova@city.ac.uk"),
               person(given = "Yun",
                      family = "Jia",
                      role = "aut",
                      email = "yunjia2019@gmail.com"),
               person(given = c("Vladimir", "K."),
                      family = "Kaishev",
                      role = "aut",
                      email = "Vladimir.Kaishev.1@city.ac.uk"),
               person(given = "Senren",
                      family = "Tan",
                      role = "aut",
                      email = "raymondtsrtsr@outlook.com"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘kdens_smnorm.Rd’, ‘kdens_symmat.Rd’, ‘lcv_kdens_symmat.Rd’, ‘lcv_kern_Wishart.Rd’
Maintainer: ‘Kei Nakagawa <kei.nak.0315@gmail.com>’

The Description field contains
  Anava and Levy (2016) <arXiv:1701.07266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'

Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Westa Domanova <w.domanova@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Westa",
                    family = "Domanova",
                    role = c("aut", "cre"),
                    email = "w.domanova@gmail.com")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpuxeJxL/file2357646b9a3122/clust.expand.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Output for data("phosphonetworkdf", package = "ksrlive"):
  Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Giuseppe Guarino <giuseppe.guarino@rete.basilicata.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elvira", "Di"),
                      family = "Nardo",
                      role = "aut",
                      email = "elvira.dinardo@unito.it"),
               person(given = "Giuseppe",
                      family = "Guarino",
                      role = c("aut", "cre"),
                      email = "giuseppe.guarino@rete.basilicata.it"))
as necessary.

The Description field contains
  (2009) <arXiv:0807.5008>, <arXiv:1012.6008>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘kstMatrix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Juan Domingo Gonzalez <juanrst@hotmail.com>’

The Description field contains
  <arxiv:1906.08198>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Miguel Rodriguez-Rosa <miguel_rosa90@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miguel",
                    family = "Rodriguez-Rosa",
                    role = c("aut", "cre"),
                    email = "miguel_rosa90@usal.es")
as necessary.
Maintainer: ‘Ying Ruan <y.ruan.16@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ying",
                    family = "Ruan",
                    role = c("aut", "cre"),
                    email = "y.ruan.16@ucl.ac.uk")
as necessary.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Serguei Sokol <sokol@insa-toulouse.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Serguei",
                    family = "Sokol",
                    role = c("aut", "cre"),
                    email = "sokol@insa-toulouse.fr")
as necessary.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpHUSeTd/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Brian Close <brian.close@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brian",
                      family = "Close",
                      role = c("aut", "cre"),
                      email = "brian.close@gmail.com"),
               person(given = "Igor",
                      family = "Zurbenko",
                      role = "aut",
                      email = "IZurbenko@albany.edu"),
               person(given = "Mingzeng",
                      family = "Sun",
                      role = "aut",
                      email = "msun@albany.edu"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) GenSyntheticLogistic.Rd:46: Lost braces; missing escapes or markup?
    46 | 3) Every coordinate yi of the outcome vector y exists in {-1, 1}^n is sampled 
       |                                                          ^
checkRd: (-1) L0Learn-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:25: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Zhao Li <lizhao.informatics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhao",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizhao.informatics@gmail.com"),
               person(given = "Peng",
                      family = "Yu",
                      role = c("aut", "cre")))
as necessary.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
problems found in ‘pipe.Rd’, ‘test_local_factors.Rd’
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Ehrlinger <john.ehrlinger@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jocelyn Chi <jocetchi@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rui Lin <ruilin1081@gmail.com>’

The Description field contains
  <arXiv:2208.13074>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘ggraph’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David W. Roberts <droberts@montana.edu>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Nuno Sempere <nuno.semperelh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justin",
                      family = "Talbot,",
                      role = "aut"),
               person(given = "Nuno",
                      family = "Sempere",
                      role = "cre",
                      email = "nuno.semperelh@gmail.com"))
as necessary.
Maintainer: ‘Joseph Larmarange <joseph@larmarange.net>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘questionr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_base_data_frame.R’ ‘as_base_data_frame2.R’
    ‘as_labeled_data_frame.R’ ‘irregular2.R’
Running massageExamples to create ‘labelr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmphIyF2o/file23cb9678938a20/get_all_lab_atts.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘labelr-introduction.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp3ICrwO/Rf23d2971b574650': No space left on device

Quitting from labelr-introduction.Rmd:305-309 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from labelr-introduction.Rmd:305-309 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'labelr-introduction.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘labelr-introduction.Rmd’

--- re-building ‘labelr-special-topics.Rmd’ using rmarkdown
--- finished re-building ‘labelr-special-topics.Rmd’

SUMMARY: processing the following file failed:
  ‘labelr-introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Panagiotis Papastamoulis <papapast@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panagiotis",
                    family = "Papastamoulis",
                    role = c("aut", "cre"),
                    email = "papapast@yahoo.gr")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Alex Searle-Barnes [aut, cre] (<https://orcid.org/0000-0003-0389-7717>, https://github.com/alexsb1)’
  Authors@R: ‘Alex Searle-Barnes [aut, cre] (ORCID: <https://orcid.org/0000-0003-0389-7717>, URL: https://github.com/alexsb1)’
Maintainer: ‘Luisa Franconi <franconi@istat.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniela",
                      family = "Ichim",
                      role = "aut"),
               person(given = "Luisa",
                      family = "Franconi",
                      role = c("aut", "cre"),
                      email = "franconi@istat.it"),
               person(given = "Michele",
                      family = "D'Alo'",
                      role = "aut"),
               person(given = "Guido",
                      family = "van den Heuvel",
                      role = "aut"))
as necessary.
Package required but not available: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristhian Paredes <craparedesca@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristhian",
                      family = "Paredes",
                      role = c("aut", "cre"),
                      email = "craparedesca@unal.edu.co"),
               person(given = "Jesús",
                      family = "Ágreda",
                      role = "aut"))
as necessary.
Maintainer: ‘Stanley E. Lazic <stan.lazic@cantab.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stanley", "E."),
                    family = "Lazic",
                    role = c("aut", "cre"),
                    email = "stan.lazic@cantab.net")
as necessary.
Checking relative paths failed with message:
  inferior call failed
Loading this package had a fatal error status code 1
Loading log:
Error in library(LABTNSCPSS) : there is no package called ‘LABTNSCPSS’
Execution halted
Packages required but not available: 'janitor', 'sjmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘lacunr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp7mcKn5/file23faa3946e5fc/lacunarity.R': No space left on device
Execution halted
 NONE
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_gaps_perc.Rd’ ‘get_cbh_metrics.Rd’ ‘get_cum_break.Rd’
    ‘get_depths.Rd’ ‘get_distance.Rd’ ‘get_effective_gap.Rd’
    ‘get_gaps_fbhs.Rd’ ‘get_layers_lad.Rd’ ‘get_real_depths.Rd’
    ‘get_real_fbh.Rd’
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Robert B. Gramacy  <rbg@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "B."),
                      family = "Gramacy",
                      role = c("aut", "cre"),
                      email = "rbg@vt.edu"),
               person(given = "Furong",
                      family = "Sun",
                      role = "aut",
                      email = "furongs@vt.edu"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: cran.R-project.org
    From: inst/doc/laGP.pdf
Maintainer: ‘Brian P. O'Connor  <brian.oconnor@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zakary", "A.", "Draper", "&", "Brian", "P."),
                      family = "O'Connor",
                      role = "aut"),
               person(given = c("Brian", "P."),
                      family = "O'Connor",
                      role = "cre",
                      email = "brian.oconnor@ubc.ca"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘NDVI2LAI.R’
Maintainer: ‘Brian Lee Yung Rowe <r@zatonovo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brian", "Lee", "Yung"),
                    family = "Rowe",
                    role = c("aut", "cre"),
                    email = "r@zatonovo.com")
as necessary.
checkRd: (-1) lambda.r-package.Rd:71-74: Lost braces
    71 | x \%g\% y \%:=\% {
       |                  ^
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Packages required but not available: 'car', 'imputeTS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de")
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp3yx1fy/file23f9695a40819e/delta.km.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'riskRegression', 'pec'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GenerateData.Rd:35-36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:59-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:67-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DOS.Rd:34: Lost braces; missing escapes or markup?
    34 |         Band-specific sensor $G_{rescale}$ (gain). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
checkRd: (-1) DOS.Rd:37: Lost braces; missing escapes or markup?
    37 |         Band-specific sensor $B_{rescale}$ (bias). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
Output for data("july2", package = "landsat"):
  Fatal error: cannot create 'R_TempDir'
cannot open the connection
problem found in ‘lang_use.Rd’
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bernardo Lares <laresbernardo@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Brad",
                      family = "Efron",
                      role = "aut",
                      email = "brad@stat.stanford.edu"))
as necessary.
Maintainer: ‘Jonas Striaukas <jonas.striaukas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonas",
                      family = "Striaukas",
                      role = c("aut", "trl", "cre"),
                      email = "jonas.striaukas@gmail.com"),
               person(given = "Matthias",
                      family = "Weber",
                      role = "aut"))
as necessary.
Maintainer: ‘Lingfei Wang <Lingfei.Wang.github@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lingfei",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "Lingfei.Wang.github@outlook.com")
as necessary.
Package required but not available: ‘ArgentinAPI’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Dewey <lists@dewey.myzen.co.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file() :
  cannot open file '/tmp/RtmpT1U75f/Rf23cc907e709f38': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Packages required but not available: 'heatmaply', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'EGAnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pavel N. Krivitsky <pavel@statnet.org>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'ergm', 'sna'

Package suggested but not available for checking: ‘heplots’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Antony Borel <antony.borel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Borel",
                      family = "A.",
                      role = "aut"),
               person(given = "Pouydebat",
                      family = "E.",
                      role = "aut"),
               person(given = "Reghem",
                      family = "E.",
                      role = "aut"),
               person(given = "Antony",
                      family = "Borel",
                      role = "cre",
                      email = "antony.borel@gmail.com"))
as necessary.
Maintainer: ‘Charlie Gao <charlie.gao@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpkP3iwx/file23e07d45406e04/later.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex Lishinski <alexlishinski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Lishinski",
                    role = c("aut", "cre"),
                    email = "alexlishinski@gmail.com")
as necessary.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘W. Kyle Hamilton <kyle.hamilton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("W.", "Kyle"),
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "kyle.hamilton@gmail.com")
as necessary.
Package required but not available: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘00methods.R’ ‘creg_datalist.R’ ‘creg_input.R’ ‘creg_partable.R’
    ‘creg_startvals.r’
Maintainer: ‘Jinsong Chen <jinsong.chen@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jinsong",
                    family = "Chen",
                    role = c("aut", "cre", "cph"),
                    email = "jinsong.chen@live.com")
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘levene.test.Rd’, ‘lnested.test.Rd’, ‘lorenz.curve.Rd’, ‘ltrend.test.Rd’, ‘michigan.Rd’, ‘mma.test.Rd’, ‘neuhauser.hothorn.test.Rd’, ‘nig.parameter.Rd’, ‘popdata.Rd’, ‘pot.Rd’, ‘rjb.test.Rd’, ‘rlm.test.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpqy3AyK/file2428e752ad52f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpqy3AyK/file2428e752ad52f': No such file or directory
Error in file(con, "r") : cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lay.Rd’
Maintainer: ‘Bill Venables <bill.venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Found the following calls to attach():
File ‘lazyData/R/requireData.R’:
  attach(NULL, pos = pos, name = searchDataName)
See section ‘Good practice’ in ‘?attach’.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Uwe Block <u.block.mz@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Vladimir Zhbanko <vladimir.zhbanko@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vladimir",
                    family = "Zhbanko",
                    role = c("aut", "cre"),
                    email = "vladimir.zhbanko@gmail.com")
as necessary.
Running massageExamples to create ‘lazytrade-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpW7y9wH/file2426e14316ef51/aml_collect_data.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Ivan Bezerra Allaman <iballaman@uesc.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Enio", "G."),
                      family = "Jelihovschi",
                      role = "aut",
                      email = "eniojelihovs@gmail.com"),
               person(given = c("Ivan", "Bezerra"),
                      family = "Allaman",
                      role = c("aut", "cre"),
                      email = "iballaman@uesc.br"))
as necessary.
Maintainer: ‘Chao Zhu <zhuchao9966@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chao",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "zhuchao9966@gmail.com")
as necessary.
Maintainer: ‘Bernardo Andrade <bbandrade@unb.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bernardo", "B."),
                      family = "Andrade",
                      role = "aut"),
               person(given = "Bernardo",
                      family = "Andrade",
                      role = "cre",
                      email = "bbandrade@unb.br"))
as necessary.
Maintainer: ‘Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arafat",
                      family = "TAYEB",
                      role = "aut",
                      email = "arafat.tayeb@ircm.qc.ca"),
               person(given = "Alexandre",
                      family = "BUREAU",
                      role = c("aut", "cre"),
                      email = "alexandre.bureau@msp.ulaval.ca"),
               person(given = "Aurelie",
                      family = "Labbe",
                      role = "aut",
                      email = "aurelie.labbe@mcgill.ca"))
as necessary.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [7s/8s] OK
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Antoine Tremblay <trea26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antoine",
                      family = "Tremblay",
                      role = c("aut", "cre"),
                      email = "trea26@gmail.com"),
               person(given = c("Department", "of"),
                      family = "Psychology",
                      role = "aut"),
               person(given = "Dalhousie",
                      family = "University",
                      role = "aut"))
as necessary.
Maintainer: ‘Weimin Zhang <zhangwm@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘JLchemix.Rd’:
    https://doi.org/10.1111/biom.12972
  File ‘sampledata.Rd’:
    https://doi.org/10.1111/biom.12972
Maintainer: ‘Daniel Manrique-Vallier <dmanriqu@indiana.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Manrique-Vallier",
                    role = c("aut", "cre"),
                    email = "dmanriqu@indiana.edu")
as necessary.
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'xcms', 'MSnbase'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gurbakhshash Singh <gsingh@ccsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gurbakhshash",
                      family = "Singh",
                      role = c("aut", "cre"),
                      email = "gsingh@ccsu.edu"),
               person(given = c("Gordon", "Hilton"),
                      family = "Fick",
                      role = "aut"))
as necessary.
Package required but not available: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chun-Yu Liu <john401528@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chun-Yu",
                      family = "Liu",
                      role = c("aut", "cph", "cre"),
                      email = "john401528@gmail.com"),
               person(given = "Shu-Nung",
                      family = "Yao",
                      role = c("rev", "ths")))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Santiago Olivella <olivella@unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Chang",
                      role = "aut"),
               person(given = "Santiago",
                      family = "Olivella",
                      role = "cre",
                      email = "olivella@unc.edu"))
as necessary.
checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^
checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^
Maintainer: ‘Kristopher Williams <kristopher.williams83@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kristopher",
                    family = "Williams",
                    role = c("aut", "cre"),
                    email = "kristopher.williams83@gmail.com")
as necessary.
Maintainer: ‘Charlie Casper <charlie.casper@hsc.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlie",
                      family = "Casper",
                      role = c("aut", "cre"),
                      email = "charlie.casper@hsc.utah.edu"),
               person(given = "Thomas",
                      family = "Cook",
                      role = "aut"),
               person(given = c("Oscar", "A.", "Perez.", "Based", "on", "FORTRAN", "program"),
                      family = "ld98.",
                      role = "aut"))
as necessary.
Maintainer: ‘Stephen H-T. Lihn <stevelihn@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available:
  'parsnip', 'recipes', 'rsample', 'tune', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vasileios Karapoulios <billkarap123@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vasileios",
                    family = "Karapoulios",
                    role = c("aut", "cre"),
                    email = "billkarap123@gmail.com")
as necessary.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘ldt-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: estim.sur
> ### Title: Estimate a SUR Model
> ### Aliases: estim.sur
> 
> ### ** Examples
> 
> # Example 1 (simulation, small model):
> set.seed(123)
> sample <- sim.sur(sigma = 2L, coef = 3L, nObs = 100)
> print(sample$coef)
                  Y1         Y2
Intercept -0.5604756 0.07050839
X1        -0.2301775 0.12928774
X2         1.5587083 1.71506499
> print(sample$sigma)
          Y1        Y2
Y1 1.8128237 0.2472081
Y2 0.2472081 0.6703814
> 
> data <- data.frame(sample$y, sample$x)
> 
> #    Use systemfit to estimate:
> exp_names <- paste0(colnames(sample$x), collapse = " + ")
> fmla <- lapply(1:ncol(sample$y), function(i) as.formula(paste0("Y", i, " ~ -1 +", exp_names)))
> fit <- systemfit::systemfit(fmla, data = data, method = "SUR")
Error in loadNamespace(x) : there is no package called ‘systemfit’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Taylor B. Arnold <tarnold2@richmond.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Taylor", "B."),
                    family = "Arnold",
                    role = c("aut", "cre"),
                    email = "tarnold2@richmond.edu")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Masatoshi Katabuchi <mattocci27@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Masatoshi",
                    family = "Katabuchi",
                    role = c("aut", "cre"),
                    email = "mattocci27@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
install log ‘’ does not exist
install log ‘’ does not exist
Maintainer: ‘Gatscha Sebastian <sebastian_gatscha@gmx.at>’

Reading Rd files failed with message:
  cannot open the connection
Running examples in ‘leaflet.extras2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: updateBuildingTime
> ### Title: Update the Shadows OSM-Buildings with a POSIXct timestamp
> ### Aliases: updateBuildingTime
> 
> ### ** Examples
> 
> library(leaflet)
> library(leaflet.extras2)
> 
> leaflet() %>%
+   addTiles() %>%
+   addBuildings() %>%
+   updateBuildingTime(as.POSIXct("2024-09-01 19:00:00 CET")) %>%
+   setView(13.40, 52.51836, 15)
Warning in file.create(to[okay]) :
  cannot create file 'lib/lfx-building-2.1.0/osm-buildings.css', reason 'No space left on device'
Warning in file.create(to[okay]) :
  cannot create file 'lib/lfx-building-2.1.0/osm-buildings.js', reason 'No space left on device'
Warning in base::file(file, open = "w+b") :
  cannot open file '/tmp/Rtmp9zXSWg/viewhtml246b02248d6039/index.html': No space left on device
Error in base::file(file, open = "w+b") : cannot open the connection
Calls: <Anonymous> ... html_print -> save_html -> save_html.default -> <Anonymous>
Execution halted
Maintainer: ‘Kenton Russell <kent.russell@timelyportfolio.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Fatal error: cannot create 'R_TempDir'
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Maintainer: ‘Agustina Ventre Lespiaucq <aguslespiaucq@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Agustina", "Ventre"),
                      family = "Lespiaucq",
                      role = c("aut", "cre"),
                      email = "aguslespiaucq@gmail.com"),
               person(given = c("Silvia", "Santamaria"),
                      family = "Bueno",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9xMoq3/ltx242aa56d97244/guava.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Tim Appelhans <tim.appelhans@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
install log ‘’ does not exist
Package required but not available: ‘workflows’

Packages suggested but not available for checking: 'caret', 'tidymodels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yunting Sun <yunting.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yunting",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "yunting.sun@gmail.com"),
               person(given = "Nancy",
                      family = "R.Zhang",
                      role = "aut",
                      email = "nzhang@stanford.edu"),
               person(given = "Art",
                      family = "B.Owen",
                      role = "aut",
                      email = "owen@stanford.edu"))
as necessary.
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "Lumley", "based", "on", "Fortran", "code", "by", "Alan"),
                      family = "Miller",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Lumley",
                      role = "cre",
                      email = "t.lumley@auckland.ac.nz"))
as necessary.
checkRd: (-1) clusterDistance.Rd:28-29: Lost braces
    28 | \code{approach} indicates the algorithm used to get the value. \code{distance} indicates the distance used to get the value. Possible values: {\code{'MAX'},
       |                                                                                                                                               ^
checkRd: (-1) clusterDistance.details.Rd:28-29: Lost braces
    28 | \code{approach} indicates the algorithm used to get the value. \code{distance} indicates the distance used to get the value. Possible values: {\code{'MAX'},
       |                                                                                                                                               ^
checkRd: (-1) clusterDistanceByApproach.Rd:24-25: Lost braces
    24 | \code{approach} indicates the algorithm used to get the value. Possible values: {\code{'MAX'},
       |                                                                                 ^
checkRd: (-1) clusterDistanceByApproach.details.Rd:24-25: Lost braces
    24 | \code{approach} indicates the algorithm used to get the value. Possible values: {\code{'MAX'},
       |                                                                                 ^
Maintainer: ‘Alvaro Briz-Redon <albrizre@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alvaro",
                      family = "Briz-Redon",
                      role = c("aut", "cre"),
                      email = "albrizre@gmail.com"),
               person(given = "Angel",
                      family = "Serrano-Aroca",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Richie Cotton <richierocks@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Richie",
                    family = "Cotton",
                    role = c("aut", "cre"),
                    email = "richierocks@gmail.com")
as necessary.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Liam J. Revell <liam.revell@umb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Liam", "J."),
                    family = "Revell",
                    role = c("aut", "cre"),
                    email = "liam.revell@umb.edu")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpIbEC3z/file2625866f983c47': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpIbEC3z/file2625866f983c47': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joseph Lewis <josephlewis1992@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Running examples in ‘LEAVcore-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LEAV
> ### Title: Compute the Length of Encoded Attribute Values
> ### Aliases: LEAV
> 
> ### ** Examples
> 
> suppressPackageStartupMessages(library(EvaluateCore))
Error in library(EvaluateCore) : 
  there is no package called ‘EvaluateCore’
Calls: suppressPackageStartupMessages -> withCallingHandlers -> library
Execution halted
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexia",
                    family = "Jolicoeur-Martineau",
                    role = c("aut", "cre"),
                    email = "alexia.jolicoeur-martineau@mail.mcgill.ca")
as necessary.

The Description field contains
  <arXiv:1703.08111>. This approach has greatly enhanced predictive power
  are available <arXiv:1712.04058>. The software can now produce
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘grab_crosswalk.R’ ‘lehdr.R’
Invalid citation information in ‘inst/CITATION’:
  Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'brms', 'ggpubr', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘S. Thomas Kelly <tomkellygenetics@gmail.com>’

The Description field contains
  to Leiden: guaranteeing well-connected communities. <arXiv:1810.08473>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Leonard <davidsleonard@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(lemon)
  > 
  > 
  > if (TRUE) {
  +   test_check("lemon")
  + } #else {
  Saving _problems/test_facet-55.R
  <deprecatedWarning in facet_rep_grid(drv ~ cyl, repeat.tick.labels = TRUE): `facet_rep_wrap` and `facet_rep_lab` have been soft-deprecated. A replacement can be found in ggh4x::facet_wrap2.>
  <deprecatedWarning in facet_rep_wrap(~cyl, repeat.tick.labels = TRUE, ncol = 3): `facet_rep_wrap` and `facet_rep_lab` have been soft-deprecated. A replacement can be found in ggh4x::facet_wrap2.>
  [ FAIL 1 | WARN 3 | SKIP 4 | PASS 156 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • On CRAN (4): 'test_brackets.R:77:1', 'test_caps.R:30:1', 'test_facet.R:3:1',
    'test_facet_aux.R:55:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_facet.R:55:3'): We can reproduce issue 24, round 2 ─────────────
  Error: cannot open stream /tmp/Rtmpgvs8NP/facet-rep-wrap-spacing-225e2651b743f09.svg
  Backtrace:
      ▆
   1. └─vdiffr::expect_doppelganger("facet_rep_wrap spacing-2", p) at test_facet.R:55:3
   2.   └─vdiffr (local) writer(fig, testcase, title)
   3.     └─vdiffr:::svglite(file)
   4.       └─vdiffr:::svglite_(...)
  
  [ FAIL 1 | WARN 3 | SKIP 4 | PASS 156 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Chris Hammill <cfhammill@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Mauricio Vargas <m.vargas.sepulveda@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Lucas Processi <lucasprocessi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lucas",
                      family = "Processi",
                      role = c("aut", "cre"),
                      email = "lucasprocessi@gmail.com"),
               person(given = "Luiz",
                      family = "Aizemberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Burhan Ozer Cavdar <bcavdar17@ku.edu.tr>’

The Description field contains
  <arXiv:2112.06251>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Petter Mostad <mostad@chalmers.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petter",
                    family = "Mostad",
                    role = c("aut", "cre"),
                    email = "mostad@chalmers.se")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘letter_value.R’ ‘print_lv.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘my-vignette.Rmd’ using rmarkdown

Quitting from my-vignette.Rmd:115-148 [slex-cohort-example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘my-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘my-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Maintainer: ‘Adam Spannbauer <spannbaueradam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Spannbauer",
                      role = c("aut", "cre"),
                      email = "spannbaueradam@gmail.com"),
               person(given = "Bryan",
                      family = "White",
                      role = "ctb"))
as necessary.
Maintainer: ‘Florian Erhard <florian.erhard@uni-wuerzburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Florian",
                    family = "Erhard",
                    role = c("aut", "cre"),
                    email = "florian.erhard@uni-wuerzburg.de")
as necessary.
Maintainer: ‘Yuan Tang <terrytangyuan@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ali Karimnezhad <ali_karimnezhad@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ali",
                      family = "Karimnezhad",
                      role = c("aut", "cre"),
                      email = "ali_karimnezhad@yahoo.com"),
               person(given = "Johnary",
                      family = "Kim",
                      role = "aut"),
               person(given = "Anna",
                      family = "Akpawu",
                      role = "aut"),
               person(given = "Justin",
                      family = "Chitpin",
                      role = "aut"),
               person(given = c("David", "R"),
                      family = "Bickel",
                      role = "aut"))
as necessary.
Maintainer: ‘M. Padilla <padilla.mpf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ye",
                      family = "Yang",
                      role = "aut"),
               person(given = "Marta",
                      family = "Padilla",
                      role = "aut"),
               person(given = "Alaa",
                      family = "Ali",
                      role = "aut"),
               person(given = "Kyle",
                      family = "Leckett",
                      role = "aut"),
               person(given = "Zhenyu",
                      family = "Yang",
                      role = "aut"),
               person(given = "Zuojing",
                      family = "Li",
                      role = "aut"),
               person(given = c("Corey", "M."),
                      family = "Yanofsky",
                      role = "aut"),
               person(given = c("David", "R."),
                      family = "Bickel",
                      role = "aut"),
               person(given = "M.",
                      family = "Padilla",
                      role = "cre",
                      email = "padilla.mpf@gmail.com"))
as necessary.
Maintainer: ‘Ali Karimnezhad <ali.karimnezhad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ali",
                    family = "Karimnezhad",
                    role = c("aut", "cre"),
                    email = "ali.karimnezhad@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'VIM', 'Hmisc', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin M. Taylor <benjamin.taylor.software@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpP3RA02/Rf247321722117b3': No space left on device
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpHovCIh/file333e27f6029b4/getCounts.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘monobin’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihuai",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "zihuai@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"),
               person(given = "Bhramar",
                      family = "Mukherjee",
                      role = "aut"),
               person(given = "Min",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lgpr.Rcheck/00install.out’ for details.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@umich.edu")
as necessary.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Gentleman",
                      role = "aut"),
               person(given = "Arthur",
                      family = "Allignol",
                      role = "cre",
                      email = "arthur.allignol@gmail.com"))
as necessary.
Maintainer: ‘Jiechao Xiong <xiongjiechao@pku.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Feng",
                      family = "Ruan",
                      role = "aut"),
               person(given = "Jiechao",
                      family = "Xiong",
                      role = c("aut", "cre"),
                      email = "xiongjiechao@pku.edu.cn"),
               person(given = "Yuan",
                      family = "Yao",
                      role = "aut"))
as necessary.
checkRd: (-1) isingdata.Rd:14: Lost braces; missing escapes or markup?
    14 |     \item{X}{a 5000-by-100 matrix, each entry is in {-1,1}.}
       |                                                     ^
checkRd: (-1) predict.lb.Rd:16: Escaped LaTeX specials: \$
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'reldist'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
problem found in ‘soa08.Rd’
Error(s) in re-building vignettes:
  ...
--- re-building ‘an_introduction_to_lifecontingencies_package.Rnw’ using Sweave
Package:  lifecontingencies
Authors:  Giorgio Alfredo Spedicato [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0315-8888>),
  Christophe Dutang [ctb] (ORCID:
    <https://orcid.org/0000-0001-6732-1501>),
  Reinhold Kainhofer [ctb] (ORCID:
    <https://orcid.org/0000-0002-7895-1311>),
  Kevin J Owens [ctb],
  Ernesto Schirmacher [ctb],
  Gian Paolo Clemente [ctb] (ORCID:
    <https://orcid.org/0000-0001-6795-4595>),
  Ivan Williams [ctb]
Version:  1.4.4
Date:     2025-11-27 22:40:02 UTC
BugReport: https://github.com/spedygiorgio/lifecontingencies/issues

Loading required package: markovchain
Loading required package: Matrix
Package:  markovchain
Version:  0.10.3
Date:     2026-02-02 06:30:37 UTC
BugReport: https://github.com/spedygiorgio/markovchain/issues

Loading required package: parallel
--- finished re-building 'an_introduction_to_lifecontingencies_package.Rnw'

--- re-building ‘mortality_projection.Rnw’ using Sweave

Error: processing vignette 'mortality_projection.Rnw' failed with diagnostics:
 chunk 2 (label = load) 
Error in library(demography) : there is no package called ‘demography’

--- failed re-building ‘mortality_projection.Rnw’

--- re-building ‘PensionPlanVal.Rmd’ using rmarkdown
--- finished re-building ‘PensionPlanVal.Rmd’

--- re-building ‘compute-detail.Rmd’ using rmarkdown
--- finished re-building ‘compute-detail.Rmd’

--- re-building ‘pensionfunding.Rmd’ using rmarkdown
--- finished re-building ‘pensionfunding.Rmd’

SUMMARY: processing the following file failed:
  ‘mortality_projection.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Glenna Nightingale <glenna.evans@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Glenna",
                    family = "Nightingale",
                    role = c("aut", "cre"),
                    email = "glenna.evans@gmail.com")
as necessary.
Maintainer: ‘Ruben H. Roa-Ureta <ruben.roa.ureta@mail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ruben", "H."),
                    family = "Roa-Ureta",
                    role = c("aut", "cre"),
                    email = "ruben.roa.ureta@mail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LifeInsuranceContracts.Rcheck/00install.out’ for details.
Maintainer: ‘Martin Barner <m@martinbarner.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Barner",
                    role = c("aut", "cre"),
                    email = "m@martinbarner.de")
as necessary.
checkRd: (-1) lx_list_lights.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:27: Lost braces in \itemize; meant \describe ?
Error(s) in re-building vignettes:
  ...
--- re-building ‘batch_import.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpijqccZ/Rf2624f81cd51990': No space left on device

Quitting from batch_import.Rmd:102-105 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from batch_import.Rmd:102-105 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'batch_import.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘batch_import.Rmd’

--- re-building ‘design-principles.Rmd’ using rmarkdown
--- finished re-building ‘design-principles.Rmd’

--- re-building ‘renormalise.Rmd’ using rmarkdown
--- finished re-building ‘renormalise.Rmd’

--- re-building ‘true_example.Rmd’ using rmarkdown
--- finished re-building ‘true_example.Rmd’

SUMMARY: processing the following file failed:
  ‘batch_import.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ruggero Bellio <ruggero.bellio@uniud.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruggero",
                      family = "Bellio",
                      role = c("aut", "cre"),
                      email = "ruggero.bellio@uniud.it"),
               person(given = "Donald",
                      family = "Pierce",
                      role = "aut"))
as necessary.
cannot open the connection
problem found in ‘logPL.Rd’
checkRd: (-1) likelihood_calculation.Rd:24: Lost braces
    24 | For eqn{i = 1\dots N} independent observations in a vector \var{X}, with individual observations \eqn{x_i}{xi}, and a set of parameter values \eqn{\theta}:
       |        ^
checkRd: (-1) simulated_annealing_algorithm.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:27: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Peter Cahusac <peteqsac@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘L_1way_ANOVA.Rd’:
    \keyword{ANOVA;}
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_1way_RM_ANOVA.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_1way_cat.Rd’:
    \keyword{Likelihood-based;}
    \keyword{binomial;}
  File ‘L_2S_ttest.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
    \keyword{test;}
  File ‘L_2way_Factorial_ANOVA.Rd’:
    \keyword{ANOVA;}
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_2way_cat.Rd’:
    \keyword{Likelihood-based;}
  File ‘L_OR.Rd’:
    \keyword{Likelihood;}
    \keyword{interval;}
    \keyword{ratio;}
    \keyword{support;}
  File ‘L_RR.Rd’:
    \keyword{Likelihood;}
    \keyword{interval;}
    \keyword{risk;}
    \keyword{support;}
  File ‘L_corr.Rd’:
    \keyword{Likelihood;}
    \keyword{correlation;}
    \keyword{support;}
  File ‘L_efficacy.Rd’:
    \keyword{efficacy;}
    \keyword{interval;}
    \keyword{support;}
  File ‘L_logistic_regress.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_regress.Rd’:
    \keyword{Likelihood;}
    \keyword{linear;}
    \keyword{quadratic;}
    \keyword{regression;}
    \keyword{support;}
  File ‘L_t_test_sample_size.Rd’:
    \keyword{Likelihood;}
    \keyword{evidence;}
    \keyword{size;}
    \keyword{test;}
  File ‘L_ttest.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
    \keyword{test;}
Maintainer: ‘Lana Garmire <lana.garmire.group@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available:
  'car', 'caret', 'pathview', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Travis Barton <travisdatabarton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Travis",
                    family = "Barton",
                    role = c("aut", "cre"),
                    email = "travisdatabarton@gmail.com",
                    comment = "2018")
as necessary.
Package required but not available: ‘keras’

Package suggested but not available for checking: ‘textclean’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/limorhyde2.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown

Quitting from introduction.Rmd:21-29 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'annotate'
---
Backtrace:
    ▆
 1. └─base::library("annotate")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'annotate'
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
sh: 1: cannot create /tmp/RtmpSNEkOe/xshell262bd418d1141f: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpSNEkOe/xshell262bd418d1141f': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Ethan Z. Welty <ethan.welty+linbin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Derick L. Rivers <riversdl@alumni.vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Derick", "L."),
                      family = "Rivers",
                      role = c("aut", "cre"),
                      email = "riversdl@alumni.vcu.edu"),
               person(given = c("Edward", "L."),
                      family = "Boone",
                      role = "aut"))
as necessary.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Maintainer: ‘Yuancheng Si <siyuanchengman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Saralees", "Nadarajah", "&", "Yuancheng"),
                      family = "Si",
                      role = "aut"),
               person(given = "Peihao",
                      family = "Wang",
                      role = "aut"),
               person(given = "Yuancheng",
                      family = "Si",
                      role = "cre",
                      email = "siyuanchengman@gmail.com"))
as necessary.
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Moriña",
                    role = c("aut", "cre"),
                    email = "david.morina@uab.cat",
                    comment = "ISGlobal, Centre for Research in Environmental Epidemiology")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpjuAIID/Rf262cca1aa91ec': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lineup-shiny.Rd’ ‘taggle-shiny.Rd’
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/Rtmp3gonCk/file2625e2191b2fce.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Vishesh Shrivastav <vishesh2k6@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vishesh",
                    family = "Shrivastav",
                    role = c("aut", "cre"),
                    email = "vishesh2k6@gmail.com")
as necessary.
Running massageExamples to create ‘linevis-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpVFh5MH/file26aa394ffcc1f9/setItems.R': No space left on device
Execution halted
 NONE
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Micah Iserman <micah.iserman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Micah",
                    family = "Iserman",
                    role = c("aut", "cre"),
                    email = "micah.iserman@gmail.com")
as necessary.
Maintainer: ‘Yongfu Liao <liao961120@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: /../../issues/3
    From: README.md
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = c("aut", "cre"),
                      email = "charles.bouveyron@gmail.com"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"),
               person(given = "Stéphane",
                      family = "Petiot",
                      role = "aut"),
               person(given = "Carlos",
                      family = "Ocanto",
                      role = "aut"))
as necessary.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ksenia N. Kyzyurova <ksenia.kyzyurova@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ksenia", "N."),
                      family = "Kyzyurova",
                      role = c("aut", "cre"),
                      email = "ksenia.kyzyurova@gmail.com"),
               person(family = "kseniak.ucoz.net",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Grueneberg <cran@agrueneberg.info>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michal Bojanowski <michal2992@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: recon.icm.edu.pl
    From: man/linkprediction.Rd
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘auto.R’
Package required but not available: ‘rAmCharts’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘linktree-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmppicEGZ/file26b29b45463fab/plot.linktree.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘linktree.Rmd’ using rmarkdown

Quitting from linktree.Rmd:107-131 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'epicontacts'
---
Backtrace:
    ▆
 1. └─base::library(epicontacts)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'linktree.Rmd' failed with diagnostics:
there is no package called 'epicontacts'
--- failed re-building ‘linktree.Rmd’

SUMMARY: processing the following file failed:
  ‘linktree.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Aaron",
                      family = "Wolen",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Warning in dir.create(filedir) :
  cannot create dir '/tmp/Rtmp9wSEIP/file26a20e5e6a2684', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9wSEIP/file26a20e5e6a2684/linl.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'Hmisc', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpMrghJB/file26b7ed1feab9fc/echelon.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘tourr’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cancerlipidome.Rd’:
    http://dx.doi.org/10.21228/M8RX01
    https://doi.org/10.3390/metabo8030041
  File ‘humanlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://doi.org/10.1194/jlr.M009449
  File ‘liverlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://dx.doi.org/10.1194/jlr.P056002
Package required but not available: ‘tableone’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'car', 'rcompanion'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'AnnotationDbi', 'GenomicFeatures'

Packages suggested but not available for checking:
  'TxDb.Hsapiens.UCSC.hg38.knownGene', 'org.Hs.eg.db', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Maintainer: ‘Patrick Roocks <mail@p-roocks.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "Roocks",
                    role = c("aut", "cre"),
                    email = "mail@p-roocks.de")
as necessary.
Running ‘testthat.R’ [23s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(LISTO)
  > 
  > test_check("LISTO")
  Install Seurat to use `buildSeuratMarkerList`.
  Saving _problems/test-LISTO-149.R
  Saving _problems/test-LISTO-150.R
  Saving _problems/test-LISTO-151.R
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 42 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-LISTO.R:149:5'): buildSeuratMarkerList works ─────────────────
  Expected `is(res$G0, "data.frame")` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test-LISTO.R:150:5'): buildSeuratMarkerList works ─────────────────
  Expected `res$G0$p_val_adj[1]` to equal 0.8366238.
  Differences:
  `actual` is NULL
  `expected` is a double vector (0.8366238)
  
  ── Failure ('test-LISTO.R:151:5'): buildSeuratMarkerList works ─────────────────
  Expected `length(res)` to equal 4.
  Differences:
    `actual`: 0.0
  `expected`: 4.0
  
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 42 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Russell S. Pierce <russell.s.pierce@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Russell", "S."),
                    family = "Pierce",
                    role = c("aut", "cre"),
                    email = "russell.s.pierce@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/drknexus/listWithDefaults
which should likely be
  https://github.com/drknexus/listWithDefaults/issues
instead.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Will Cornwell <wcornwell@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: \doi%7B10.1111/2041-210X.12138%7D
    From: README.md
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘dest.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    https://doi.org/10.1016/j.jspi.2010.05.030
    http://doi.org/10.1080/03610920601126522
  File ‘hatl.Rd’:
    http://doi.org/10.1080/03610929308831027
  File ‘infoliu.Rd’:
    https://doi.org/10.1109/TAC.1974.1100705
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘lstats.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    http://doi.org/10.2307/1267380
  File ‘plot.biasliu.Rd’:
    https://doi.org/10.1002/cem.2555
  File ‘plot.infoliu.Rd’:
    https://doi.org/10.1109/TAC.1974.1100705
  File ‘plot.liu.Rd’:
    http://doi.org/10.1080/03610929308831027
  File ‘press.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    http://doi.org/10.1080/03610920601126522
  File ‘residuals.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘summary.liu.Rd’:
    http://doi.org/10.1080/03610918.2012.750354
checkRd: (-1) lstats.liu.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) vcov.liu.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear Liu regression model for scalar or vector biasing parameter \code{d}{d} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{d}{d}.}
       |                                                                                                                             ^
Maintainer: ‘Ryan Gill <ryan.gill@louisville.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michal",
                      family = "Czajkowski",
                      role = "aut"),
               person(given = "Ryan",
                      family = "Gill",
                      role = c("aut", "cre"),
                      email = "ryan.gill@louisville.edu"),
               person(given = "Greg",
                      family = "Rempala",
                      role = "aut"))
as necessary.
Maintainer: ‘Lars Kotthoff <larsko@uwyo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lars",
                      family = "Kotthoff",
                      role = c("aut", "cre"),
                      email = "larsko@uwyo.edu"),
               person(given = "Bernd",
                      family = "Bischl",
                      role = "aut"),
               person(given = "Barry",
                      family = "Hurley",
                      role = "ctb"),
               person(given = "Talal",
                      family = "Rahwan",
                      role = "ctb"),
               person(given = "Damir",
                      family = "Pulatov",
                      role = "ctb"))
as necessary.
Packages required but not available:
  'plotly', 'officer', 'timetk', 'parsnip', 'recipes', 'workflows',
  'rsample', 'modeltime.ensemble', 'modeltime'

Packages suggested but not available for checking:
  'modeltime.resample', 'tidymodels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shiyang Zheng <shiyang.zheng@nottingham.ac.uk>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpfWYiVt/Rf26acc65c93f4ed': No space left on device
Package required but not available: ‘text’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
File ‘llmjson/libs/llmjson.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Packages required but not available: 'fmdu', 'ggpubr', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Getting_Started_with_LMD.Rmd’ using rmarkdown

Quitting from Getting_Started_with_LMD.Rmd:21-61 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggformula'
---
Backtrace:
    ▆
 1. └─base::library("ggformula")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Getting_Started_with_LMD.Rmd' failed with diagnostics:
there is no package called 'ggformula'
--- failed re-building ‘Getting_Started_with_LMD.Rmd’

SUMMARY: processing the following file failed:
  ‘Getting_Started_with_LMD.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘dynutils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Note: skipping ‘covariance_structures.Rmd’ due to unavailable dependencies:
  'glmmTMB'
Maintainer: ‘"Antoine Tremblay, Statistics Canada" <trea26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antoine",
                      family = "Tremblay",
                      role = "aut"),
               person(given = "Statistics",
                      family = "Canada",
                      role = "aut"),
               person(given = "Johannes",
                      family = "Ransijn",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Copenhagen",
                      role = "aut"),
               person(given = "\"Antoine",
                      family = "Tremblay",
                      role = "cre"),
               person(given = "Statistics",
                      family = "Canada\"",
                      role = "cre",
                      email = "trea26@gmail.com"))
as necessary.
checkRd: (-1) relLik.Rd:16: Lost braces
    16 | \item{AIC(x), BIC(x) }{The \code{AIC} or ]code{BIC} value of the first model object.}
       |                                               ^
checkRd: (-1) relLik.Rd:17: Lost braces
    17 | \item{AIC(y), BIC(y) }{The \code{AIC} or ]code{BIC} value of the second model object.}
       |                                               ^
Package required but not available: ‘HLMdiag’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Kvalnes <thomas.kvalnes@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Kvalnes",
                    role = c("aut", "cre"),
                    email = "thomas.kvalnes@ntnu.no")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘lmhelprs.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpzHFZuM/Rf2a621f66f48118': No space left on device

Quitting from lmhelprs.Rmd:145-148 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from lmhelprs.Rmd:145-148 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lmhelprs.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘lmhelprs.Rmd’

SUMMARY: processing the following file failed:
  ‘lmhelprs.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LMMELSM.Rcheck/00install.out’ for details.
Maintainer: ‘Marvin N. Wright <marv@wrig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marvin", "N."),
                    family = "Wright",
                    role = c("aut", "cre"),
                    email = "marv@wrig.de")
as necessary.
Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "Joseph", "L."),
                      family = "Schafer",
                      role = "aut"),
               person(given = c("Jing", "hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ## * load packages
  > library(testthat)
  > library(LMMstar)
  LMMstar version 1.1.0
  
  Attaching package: 'LMMstar'
  
  The following object is masked from 'package:base':
  
      remove
  
  > 
  > library(data.table)
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  > library(ggplot2)
  > library(lava)
  
  Attaching package: 'lava'
  
  The following object is masked from 'package:ggplot2':
  
      vars
  
  The following object is masked from 'package:testthat':
  
      compare
  
  > library(lme4)
  Loading required package: Matrix
  > library(lmerTest)
  
  Attaching package: 'lmerTest'
  
  The following object is masked from 'package:lme4':
  
      lmer
  
  The following object is masked from 'package:stats':
  
      step
  
  > library(mice)
  Error in library(mice) : there is no package called 'mice'
  Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpAvq5pr/ltx2a6ba32300dc0a/cdfgam.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘genefilter’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQRnJQj/file2babea58569c57': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpQRnJQj/file2babea58569c57': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) vcov.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear ridge regression model for scalar or vector biasing parameter \code{K}{K} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{K}{K}.}
       |                                                                                                                               ^
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Francesco Pauli <francesco.pauli@deams.units.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francesco",
                    family = "Pauli",
                    role = c("aut", "cre"),
                    email = "francesco.pauli@deams.units.it",
                    comment = "see file LICENSEMEDIA for credits on sounds and images")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Konrad Klotzke <omd.bms.utwente.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Paul",
                      family = "Fox",
                      role = "aut"),
               person(given = "Konrad",
                      family = "Klotzke",
                      role = c("aut", "cre"),
                      email = "omd.bms.utwente.stats@gmail.com"),
               person(given = c("Rinke", "Klein"),
                      family = "Entink",
                      role = "aut"))
as necessary.
Maintainer: ‘Wangshu Tu <wangshu.tu@carleton.ca>’

The Description field contains
  <arXiv:2011.06682>, and is designed for clustering compositional data.
  in papers: Tu and Subedi (2021) <arXiv:2101.01871> and Tu and Subedi
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hiroyuki Yamamoto <h.yama2396@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hiroyuki",
                    family = "Yamamoto",
                    role = c("aut", "cre"),
                    email = "h.yama2396@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmphMlL6h/Rf2c710d23a49ca1': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Antonio Elías <antonioefz91@gmail.com>’

The Description field contains
  <arXiv:2007.16059>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/aefdz/localFDA
which should likely be
  https://github.com/aefdz/localFDA/issues
instead.
Maintainer: ‘Tore Selland Kleppe <tore.kleppe@uis.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tore", "Selland"),
                    family = "Kleppe",
                    role = c("aut", "cre"),
                    email = "tore.kleppe@uis.no")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Martin Walter <mf-walter@web.de>’

The Description field contains
  Pitkin (2013) <arXiv:1309.6392>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/xiangzhou09/localIV
which should likely be
  https://github.com/xiangzhou09/localIV/issues
instead.
Package required but not available: ‘sampleSelection’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gdverse’

Package suggested but not available for checking: ‘automap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘locate.R’
Maintainer: ‘Maximilian Zellner <zellnermaximilian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maximilian",
                    family = "Zellner",
                    role = c("aut", "cre"),
                    email = "zellnermaximilian@gmail.com")
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = c("Sharon", "M."),
                      family = "Lutz",
                      role = "ctb"),
               person(given = "Christoph",
                      family = "Lange",
                      role = "ctb"))
as necessary.
Maintainer: ‘Jialu Ran <jialuran422@gmail.com>’

The Description field contains
  was proposed in Wang and Guo (2023) <arXiv:2008.08915>. For brain
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'ensembldb', 'plotly', 'rtracklayer'

Packages suggested but not available for checking:
  'AnnotationHub', 'EnsDb.Hsapiens.v75'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ilja M. Nolte <i.m.nolte@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ahmad",
                      family = "Vaez",
                      role = "aut"),
               person(given = c("Ilja", "M."),
                      family = "Nolte",
                      role = c("aut", "cre"),
                      email = "i.m.nolte@umcg.nl"),
               person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bittermelon.R’ ‘lofi.Rd’
Maintainer: ‘Sneha Tody <sn.tody1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sneha",
                    family = "Tody",
                    role = c("aut", "cre"),
                    email = "sn.tody1@gmail.com")
as necessary.
Maintainer: ‘Charles Kooperberg <clk@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Kooperberg",
                      role = c("aut", "cre"),
                      email = "clk@fredhutch.org"),
               person(given = "Ingo",
                      family = "Ruczinski",
                      role = "aut",
                      email = "ingo@jhu.edu"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘emayili_emailer.R’ ‘login_server.R’
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhiyong Zhang <johnnyzhz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haiyan",
                      family = "Liu",
                      role = "aut"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "johnnyzhz@gmail.com"))
as necessary.
Packages required but not available:
  'adabag', 'car', 'caret', 'klaR', 'MachineShop'

Depends: includes the non-default packages:
  'adabag', 'arm', 'brnn', 'C50', 'car', 'caret', 'corrplot', 'Cubist',
  'doParallel', 'dplyr', 'e1071', 'gam', 'gbm', 'ggplot2', 'ggplotify',
  'glmnet', 'gridExtra', 'gt', 'htmltools', 'htmlwidgets', 'ipred',
  'klaR', 'MachineShop', 'magrittr', 'MASS', 'mda', 'parallel', 'pls',
  'pROC', 'purrr', 'randomForest', 'ranger', 'reactable', 'readr',
  'rpart', 'scales', 'tidyr', 'tree', 'xgboost'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrew J. Landgraf <andland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "J."),
                    family = "Landgraf",
                    role = c("aut", "cre"),
                    email = "andland@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel Escabias <escabias@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carmen", "Lucia", "Reina", "Ana", "Maria", "Aguilera"),
                      family = "<aaguiler@ugr.es>",
                      role = "aut",
                      email = "aaguiler@ugr.es"),
               person(given = "Manuel",
                      family = "Escabias",
                      role = c("aut", "cre"),
                      email = "escabias@ugr.es"))
as necessary.
Packages required but not available: 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Wutzler <twutz@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wutzler",
                    role = c("aut", "cre"),
                    email = "twutz@bgc-jena.mpg.de")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic_usage.Rmd’ using rmarkdown
--- finished re-building ‘basic_usage.Rmd’

--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’

--- re-building ‘convergence.Rmd’ using rmarkdown
--- finished re-building ‘convergence.Rmd’

--- re-building ‘data_formatting.Rmd’ using rmarkdown
--- finished re-building ‘data_formatting.Rmd’

--- re-building ‘interactions.Rmd’ using rmarkdown
--- finished re-building ‘interactions.Rmd’

--- re-building ‘mnl_models.Rmd’ using rmarkdown
--- finished re-building ‘mnl_models.Rmd’

--- re-building ‘mnl_models_weighted.Rmd’ using rmarkdown
--- finished re-building ‘mnl_models_weighted.Rmd’

--- re-building ‘mxl_models.Rmd’ using rmarkdown
--- finished re-building ‘mxl_models.Rmd’

--- re-building ‘predict.Rmd’ using rmarkdown
--- finished re-building ‘predict.Rmd’

--- re-building ‘summarizing_results.Rmd’ using rmarkdown

Quitting from summarizing_results.Rmd:107-112 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'gtsummary'
---
Backtrace:
    ▆
 1. └─base::library(gtsummary)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'summarizing_results.Rmd' failed with diagnostics:
there is no package called 'gtsummary'
--- failed re-building ‘summarizing_results.Rmd’

--- re-building ‘utility_models.Rmd’ using rmarkdown
--- finished re-building ‘utility_models.Rmd’

SUMMARY: processing the following file failed:
  ‘summarizing_results.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Thomas Wutzler <twutz@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wutzler",
                    role = c("aut", "cre"),
                    email = "twutz@bgc-jena.mpg.de")
as necessary.
Maintainer: ‘Phillip Labuschagne <philliplab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Phillip",
                    family = "Labuschagne",
                    role = c("aut", "cre"),
                    email = "philliplab@gmail.com")
as necessary.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘ggimage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘logger.R’
Maintainer: ‘Guy Ashiri-Prossner <guy.ashiri@mail.huji.ac.il>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guy",
                    family = "Ashiri-Prossner",
                    role = c("aut", "cre"),
                    email = "guy.ashiri@mail.huji.ac.il")
as necessary.
Maintainer: ‘Eric Bridgeford <ericwb95@gmail.com>’

The Description field contains
  et al. (2017) <arXiv:1709.01233>, we provide several methods for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Madan G Kundu <madan_g.kundu@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Madan", "G"),
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "madan_g.kundu@yahoo.com")
as necessary.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'glmmTMB', 'bestNormalize', 'car', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
File ‘longitree/libs/longitree.so’:
  Found ‘_gfortran_random_r8’, possibly from ‘random_number’ (Fortran)
    Object: ‘longitree_program.o’
  Found ‘_gfortran_random_seed_i4’, possibly from ‘random_seed’
    (Fortran)
    Object: ‘longitree_program.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Maintainer: ‘Zhuowei Sun <sunzw21@mails.jlu.edu.cn>’

The Description field contains
  this package: Sun, Z. et al. (2023) <arXiv:2305.17715> and Liu, C. et
  al. (2023) <arXiv:2305.17662>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Package required but not available: ‘fdapace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘StatMatch’

Packages suggested but not available for checking:
  'ggalluvial', 'FactoMineR', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alessio Farcomeni <alessio.farcomeni@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alessio",
                    family = "Farcomeni",
                    role = c("aut", "cre"),
                    email = "alessio.farcomeni@uniroma1.it")
as necessary.
Maintainer: ‘Ross Jacobucci <rcjacobuc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ross",
                      family = "Jacobucci",
                      role = c("aut", "cre"),
                      email = "rcjacobuc@gmail.com"),
               person(given = "Sam",
                      family = "Stewart",
                      role = "aut"),
               person(given = "Mohamed",
                      family = "Abdolell",
                      role = "aut"),
               person(given = "Sarfaraz",
                      family = "Serang",
                      role = "ctb"),
               person(given = "Gabriela",
                      family = "Stegmann",
                      role = "ctb"))
as necessary.
Packages required but not available: 'fdapace', 'refund', 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘logicalQueries.Rmd’ using rmarkdown
Warning in file(con, "w") :
  cannot open file '/tmp/RtmpERyiUg/rmarkdown-str33811767362d63.html': No space left on device
Error: processing vignette 'logicalQueries.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘logicalQueries.Rmd’

--- re-building ‘loonPlotsAndGridGraphics.Rmd’ using rmarkdown
--- finished re-building ‘loonPlotsAndGridGraphics.Rmd’

--- re-building ‘savingLoonPlots.Rmd’ using rmarkdown
--- finished re-building ‘savingLoonPlots.Rmd’

--- re-building ‘teaching-example-smoothing.Rmd’ using rmarkdown
--- finished re-building ‘teaching-example-smoothing.Rmd’

SUMMARY: processing the following file failed:
  ‘logicalQueries.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ....................Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp2dbzcj/ltx339bd117807387/l_move_valign.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
install log ‘’ does not exist
Package required but not available: ‘tourr’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexis Dinno <alexis.dinno@pdx.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexis",
                    family = "Dinno",
                    role = c("aut", "cre"),
                    email = "alexis.dinno@pdx.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Into_to_loopevd.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp6aLXrc/Rf335a236aa77cbb': No space left on device

Quitting from Into_to_loopevd.Rmd:45-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Into_to_loopevd.Rmd:45-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Into_to_loopevd.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Into_to_loopevd.Rmd’

SUMMARY: processing the following file failed:
  ‘Into_to_loopevd.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Package required but not available: ‘CAvariants’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xi",
                      family = "LUO",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Packages required but not available: 'parsnip', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggalluvial', 'ggpubr', 'Hmisc', 'DescTools', 'HH'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geomorph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sara Algeri <salgeri@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Algeri",
                      role = c("aut", "cre"),
                      email = "salgeri@umn.edu"),
               person(given = "Haoran",
                      family = "Liu",
                      role = "aut",
                      email = "liu00728@umn.edu"))
as necessary.

The Description field contains
  S. (2019) <arXiv:1906.06615>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniela M Witten <dwitten@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M"),
                      family = "Witten",
                      role = c("aut", "cre"),
                      email = "dwitten@uw.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Kaijun Wang <kaijun.wang@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijun.wang@temple.edu"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘lpirfs_vignette.Rmd’ using rmarkdown

Quitting from lpirfs_vignette.Rmd:21-31 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggpubr'
---
Backtrace:
    ▆
 1. └─base::library(ggpubr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lpirfs_vignette.Rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘lpirfs_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘lpirfs_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Kaijun Wang <kaijunwang.19@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijunwang.19@gmail.com"))
as necessary.

The Description field contains
  (2020, Biometrika); <arXiv:1810.01724>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘LPGraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jeffrey Endelman <endelman@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Endelman",
                    role = c("aut", "cre"),
                    email = "endelman@wisc.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiangyu Zhang <zhan6004@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhan6004@umn.edu"),
               person(given = "Sara",
                      family = "Algeri",
                      role = "aut",
                      email = "salgeri@umn.edu"))
as necessary.

The Description field contains
  Algeri S. and Zhang X. (2020) <arXiv:2005.13011>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'LPGraph', 'LPBkg', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rong Li <rong_li@ruc.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingcong",
                      family = "Wu",
                      role = "aut"),
               person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Rong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "rong_li@ruc.edu.cn"))
as necessary.
Maintainer: ‘Marco Geraci <marco.geraci@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Geraci",
                    role = c("aut", "cre"),
                    email = "marco.geraci@uniroma1.it")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "chedgala@espol.edu.ec"),
               person(given = "Luis",
                      family = "Benites",
                      role = "aut",
                      email = "lbenitess@pucp.edu.pe"),
               person(given = "Marcelo",
                      family = "Bourguignon",
                      role = "aut",
                      email = "m.p.bourguignon@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@uconn.edu"))
as necessary.
Maintainer: ‘Rick Wargo <lrequire@rickwargo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rick",
                    family = "Wargo",
                    role = c("aut", "cre"),
                    email = "lrequire@rickwargo.com")
as necessary.
Maintainer: ‘Adam Mantz <amantz@slac.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Mantz",
                    role = c("aut", "cre"),
                    email = "amantz@slac.stanford.edu")
as necessary.
Running massageExamples to create ‘lrstat-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpSg5JMY/file332a1a548caf2d/ClopperPearsonCI.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ................................Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp7FDN1i/ltx337e4a52854b82/zstatRiskRatio.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/LSAMBA.Rcheck/00install.out’ for details.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'BIFIEsurvey', 'miceadds', 'mice', 'difR', 'car', 'mitml', 'prettyR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpSChXpI/ltx33e00a6c08e76', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSChXpI/ltx33e00a6c08e76/anova.lsasimcluster.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Bjoern Schwalb <schwalb.bjoern@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bjoern",
                      family = "Schwalb",
                      role = c("aut", "cre"),
                      email = "schwalb.bjoern@gmail.com"),
               person(given = "Achim",
                      family = "Tresch",
                      role = "aut"),
               person(given = "Phillipp",
                      family = "Torkler",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Duemcke",
                      role = "ctb"),
               person(given = "Carina",
                      family = "Demel",
                      role = "ctb"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "ctb"),
               person(given = "Bill",
                      family = "Venables",
                      role = "ctb"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sergio Andrés Cabrera Miranda <sergio05acm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sergio", "Andrés", "Cabrera"),
                      family = "Miranda",
                      role = c("aut", "cre"),
                      email = "https://orcid.org/0000-0002-8126-8521"),
               person(given = c("Juan", "Gabriel", "Triana"),
                      family = "Laverde",
                      role = "aut",
                      email = "https://orcid.org/0000-0003-2991-6082"))
as necessary.
Packages required but not available: 'spatstat', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mikhail A. Beketov <mikhail.beketov@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "A."),
                    family = "Beketov",
                    role = c("aut", "cre"),
                    email = "mikhail.beketov@gmx.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘LSMonteCarlo-package.Rd’:
    \keyword{ 
      Quantitative Finance
      Option pricing
      Mon [TRUNCATED]
Error(s) in re-building vignettes:
  ...
--- re-building ‘LSMRealOptions.Rmd’ using rmarkdown

Quitting from LSMRealOptions.Rmd:395-397 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'NFCP'
---
Backtrace:
    ▆
 1. ├─base::print(NFCP::SS_oil$two_factor[2:7])
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'LSMRealOptions.Rmd' failed with diagnostics:
there is no package called 'NFCP'
--- failed re-building ‘LSMRealOptions.Rmd’

SUMMARY: processing the following file failed:
  ‘LSMRealOptions.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Gereon Poschmann <gereon.poschmann@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rafael",
                      family = "Dellen",
                      role = "aut"),
               person(given = c("with", "contributions", "of", "Fabian"),
                      family = "Kruse",
                      role = "aut"),
               person(given = "Gereon",
                      family = "Poschmann",
                      role = "cre",
                      email = "gereon.poschmann@hhu.de"))
as necessary.
Maintainer: ‘Danielle Navarro <djnavarro@protonmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mehdi Sarparast <mehdisarparast@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mehdi",
                    family = "Sarparast",
                    role = c("aut", "cre"),
                    email = "mehdisarparast@gmail.com")
as necessary.
Maintainer: ‘Arvin Satwani <arvinsatwani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhezhen",
                      family = "Jin",
                      role = "aut",
                      email = "zj7@columbia.edu"),
               person(given = "Arvin",
                      family = "Satwani",
                      role = c("aut", "cre"),
                      email = "arvinsatwani@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_plot_labels.Rd’ ‘datasim_helpers.R’ ‘datasim_make.Rd’
    ‘model_eval.R’ ‘model_eval.Rd’ ‘model_plot.R’ ‘model_skeleton.Rd’
    ‘model_values.R’ ‘model_values.Rd’ ‘mosaic_cull_for_do.Rd’ ‘ntiles.R’
    ‘ntiles.Rd’ ‘point_plot.R’ ‘point_plot.Rd’ ‘print.R’
    ‘random_terms.Rd’ ‘regression_summaries.Rd’ ‘sims.R’
    ‘statistical_annotations.Rd’ ‘trials.R’ ‘trials.Rd’ ‘zero_one.Rd’
Package required but not available: ‘EFAfactors’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peiliang Bai <baipl92@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peiliang",
                    family = "Bai",
                    role = c("aut", "cre"),
                    email = "baipl92@ufl.edu")
as necessary.
Maintainer: ‘Ocheredko Oleksandr <Ocheredko@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ocheredko",
                    family = "Oleksandr",
                    role = c("aut", "cre"),
                    email = "ocheredko@yahoo.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘smr_custom.R’ ‘smr_major.R’ ‘smr_minor.R’
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ltertools.Rcheck/00install.out’ for details.
Maintainer: ‘Martin Blostein <martin.blostein@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Blostein",
                      role = c("aut", "cre"),
                      email = "martin.blostein@gmail.com"),
               person(given = "Tatjana",
                      family = "Miljkovic",
                      role = "aut",
                      email = "miljkot@miamioh.edu"))
as necessary.
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nikola Kasprikova <nikola.kasprikova@lf1.cuni.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nikola",
                    family = "Kasprikova",
                    role = c("aut", "cre"),
                    email = "nikola.kasprikova@lf1.cuni.cz")
as necessary.
checkRd: (-1) k.Rd:27: Lost braces
    27 |  code{\link{ACSPlan-class}}, 
       |      ^
Maintainer: ‘Dong Liang <dliang@umces.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Naresh",
                      family = "Kumar",
                      role = "aut"),
               person(given = "Dong",
                      family = "Liang",
                      role = c("aut", "cre"),
                      email = "dliang@umces.edu"))
as necessary.
checkRd: (-1) Upload_to_db.Rd:43: Lost braces
    43 | lucas]{Connect_to_db}
       |       ^
Maintainer: ‘Maninder Singh Dhillon <manidhillon1989@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maninder", "Singh"),
                      family = "Dhillon",
                      role = c("aut", "cre"),
                      email = "manidhillon1989@gmail.com"),
               person(given = "Thorsten",
                      family = "Dahms",
                      role = "ctb"),
               person(given = "Leon",
                      family = "Nill",
                      role = "ctb"))
as necessary.
Maintainer: ‘Simon Moulds <sim.moulds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Moulds",
                    role = c("aut", "cre"),
                    email = "sim.moulds@gmail.com")
as necessary.
Running examples in ‘lulcc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: allow
> ### Title: Implement decision rules for land use change
> ### Aliases: allow
> 
> ### ** Examples
> 
> 
> ## Plum Island Ecosystems
> 
> ## load observed land use data
> obs <- ObsLulcRasterStack(x=pie,
+                    pattern="lu",
+                    categories=c(1,2,3),
+                    labels=c("forest","built","other"),
+                    t=c(0,6,14))
> 
> ## get land use values
> x <- getValues(obs[[1]])
> x <- x[!is.na(x)]
> 
> ## create vector of arbitrary land use history values
> hist <- sample(1:10, length(x), replace=TRUE)
> 
> ## calculate demand and get change direction for first timestep
> dmd <- approxExtrapDemand(obs=obs, tout=0:14)
Warning in total(x = obs) :
  missing argument 'categories': getting categories from 'x'
Error in loadNamespace(x) : there is no package called ‘Hmisc’
Calls: approxExtrapDemand ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Siyu Tao <siyutao2020@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyu",
                      family = "Tao",
                      role = c("aut", "cre"),
                      email = "siyutao2020@u.northwestern.edu"),
               person(given = "Yichi",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("Daniel", "W."),
                      family = "Apley",
                      role = "aut"),
               person(given = "Wei",
                      family = "Chen",
                      role = "aut"))
as necessary.

The Description field contains
  Chen, and Daniel W. Apley (2018) <arXiv:1806.07504>. The package is
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) LVGP_fit.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_predict.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) math_example.Rd:21: Lost braces
    21 | Data are sampled from the modified math function based on the first example in the paper listed in code{references}.
       |                                                                                                        ^
Package required but not available: ‘rsample’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Packages required but not available: 'qgraph', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘classify.R’ ‘extract.R’ ‘score.R’
Maintainer: ‘Sean Jewell <swjewell@uw.edu>’

The Description field contains
  <arXiv:1703.08644>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘caret’

Packages suggested but not available for checking: 'moveHMM', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jenise Swall <jswall@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jenise",
                    family = "Swall",
                    role = c("aut", "cre"),
                    email = "jswall@vcu.edu")
as necessary.
Packages required but not available: 'recipes', 'rsample'

Packages suggested but not available for checking:
  'adabag', 'censored', 'Hmisc', 'ParBayesianOptimization', 'parsnip',
  'randomForestSRC', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘etl’

Package suggested but not available for checking: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Dave Zes <zesdave@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dave",
                    family = "Zes",
                    role = c("aut", "cre"),
                    email = "zesdave@gmail.com")
as necessary.
Package required but not available: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘AC Del Re <acdelre@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'janitor', 'haven', 'fabR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Doulaye Dembele <doulaye@igbmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Doulaye",
                    family = "Dembele",
                    role = c("aut", "cre"),
                    email = "doulaye@igbmc.fr")
as necessary.
Maintainer: ‘Remko Duursma <remkoduursma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Remko",
                    family = "Duursma",
                    role = c("aut", "cre"),
                    email = "remkoduursma@gmail.com")
as necessary.
Running massageExamples to create ‘magicaxis-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpH0GLPy/file332ed225014322/magcon.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Error(s) in re-building vignettes:
  ...
--- re-building ‘intro.Rmd’ using rmarkdown
Linking to librsvg 2.62.1
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpygzpGv/Rf336ca845286b56': No space left on device

Quitting from intro.Rmd:301-303 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from intro.Rmd:301-303 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'intro.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Simon Garnier <garnier@njit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Garnier",
                    role = c("aut", "cre"),
                    email = "garnier@njit.edu")
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MagmaClustR.Rcheck/00install.out’ for details.
Packages required but not available: 'tidyverse', 'janitor', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Chaston <john_chaston@byu.edu>’

Found the following (possibly) invalid file URI:
  URI: www.orthomcl.org
    From: inst/doc/using_mag.html
Maintainer: ‘Mark Clements <mark.clements@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Clements",
                      role = c("aut", "cre"),
                      email = "mark.clements@ki.se"),
               person(given = "Dianne",
                      family = "O'Connell",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpwylLPg/file336c676b8442b2': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpwylLPg/file336c676b8442b2': No such file or directory
Error in file(con, "r") : cannot open the connection
Running examples in ‘maicplus-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: basic_kmplot2
> ### Title: Basic Kaplan Meier (KM) plot function using ggplot
> ### Aliases: basic_kmplot2
> 
> ### ** Examples
> 
> library(survival)
> data(adtte_sat)
> data(pseudo_ipd_sat)
> 
> kmobj_A <- survfit(Surv(TIME, EVENT) ~ ARM,
+   data = adtte_sat,
+   conf.type = "log-log"
+ )
> 
> kmobj_B <- survfit(Surv(TIME, EVENT) ~ ARM,
+   data = pseudo_ipd_sat,
+   conf.type = "log-log"
+ )
> 
> kmlist <- list(kmobj_A = kmobj_A, kmobj_B = kmobj_B)
> kmlist_name <- c("A", "B")
> 
> basic_kmplot2(kmlist, kmlist_name)
Error in basic_kmplot2(kmlist, kmlist_name) : 
  survminer package is required for this function
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘anchored_binary.Rmd’ using rmarkdown
--- finished re-building ‘anchored_binary.Rmd’

--- re-building ‘anchored_survival.Rmd’ using rmarkdown
--- finished re-building ‘anchored_survival.Rmd’

--- re-building ‘calculating_weights.Rmd’ using rmarkdown
--- finished re-building ‘calculating_weights.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘kaplan_meier_plots.Rmd’ using rmarkdown

Quitting from kaplan_meier_plots.Rmd:30-32 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'survminer'
---
Backtrace:
    ▆
 1. └─base::library(survminer)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'kaplan_meier_plots.Rmd' failed with diagnostics:
there is no package called 'survminer'
--- failed re-building ‘kaplan_meier_plots.Rmd’

--- re-building ‘unanchored_binary.Rmd’ using rmarkdown
--- finished re-building ‘unanchored_binary.Rmd’

--- re-building ‘unanchored_survival.Rmd’ using rmarkdown
--- finished re-building ‘unanchored_survival.Rmd’

SUMMARY: processing the following file failed:
  ‘kaplan_meier_plots.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpea3MYE/ltx34454c604eeb2b/pseudo_ipd_twt.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'survminer', 'VIM'

Packages suggested but not available for checking: 'haven', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rahul Premraj <r.premraj+mailR@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rahul",
                    family = "Premraj",
                    role = c("aut", "cre"),
                    email = "r.premraj+mailr@gmail.com")
as necessary.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Package required but not available: ‘tmap’

Package suggested but not available for checking: ‘BiocCheck’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex J. Krebs <Krebs.AlexJ@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J."),
                    family = "Krebs",
                    role = c("aut", "cre"),
                    email = "krebs.alexj@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Mehrab Ghanat Bari <m.ghanatbari@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mehrab", "Ghanat"),
                    family = "Bari",
                    role = c("aut", "cre"),
                    email = "m.ghanatbari@gmail.com")
as necessary.
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ows4R’

Package suggested but not available for checking: ‘rdhs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpIQuHcd/ltx33b72e438194a3/import_spede_clusters.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘mallet-Ex.R’ failed
The error occurred in:

Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Imanuel Costigan <i.costigan@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Imanuel",
                    family = "Costigan",
                    role = c("aut", "cre"),
                    email = "i.costigan@me.com")
as necessary.
checkRd: (-1) create_terminal_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                              ^
checkRd: (-1) create_terminal_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                                                   ^
checkRd: (-1) full_repo_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                              ^
checkRd: (-1) full_repo_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                                                   ^
Maintainer: ‘Luciane Ferreira Alcoforado <lucianea@id.uff.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luciane", "Ferreira"),
                    family = "Alcoforado",
                    role = c("aut", "cre"),
                    email = "lucianea@id.uff.br")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luke Jostins <luke.jostins@kennedy.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Jostins",
                    role = c("aut", "cre"),
                    email = "luke.jostins@kennedy.ox.ac.uk")
as necessary.
checkRd: (-1) MangroveTree.Rd:37: Lost braces
    37 |       An object of class \\code{\link[Mangrove]{MangrovePed}}
       |                                ^
Maintainer: ‘Chris Grace <cgrace@well.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Grace",
                    role = c("aut", "cre"),
                    email = "cgrace@well.ox.ac.uk")
as necessary.
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(manipulateWidget)
  > 
  > test_check("manipulateWidget")
  Saving _problems/test-input_env-162.R
  [ FAIL 1 | WARN 1 | SKIP 1 | PASS 639 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • empty test (1): 'test-inputs.R:97:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-input_env.R:162:7'): InputEnv Class / unshares a group of inputs ──
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─testthat::expect_silent(model$inputList$getInput("b", i)) at test-input_env.R:162:7
   2.   └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   3.     └─testthat (local) .capture(...)
   4.       └─withr::with_output_sink(...)
   5.         └─withr:::set_output_sink(file = new, append = append, split = split)
   6.           └─withr:::output_sink(file = file, append = append, split = split)
   7.             └─base::sink(file = file, append = append, type = "output", split = split)
   8.               └─base::file(file, if (append) "a" else "w")
  
  [ FAIL 1 | WARN 1 | SKIP 1 | PASS 639 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shiqi Tu <tushiqi@picb.ac.cn>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sarah Friedrich <sarah.friedrich@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@math.uni-augsburg.de"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"))
as necessary.
checkRd: (-1) EEGwide.Rd:30-33: Lost braces
    30 |   if(requireNamespace("ggplot2")){ 
       |                                  ^
Packages required but not available: 'biomaRt', 'caret', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'recipes', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggraph', 'AER'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flextable’

Package suggested but not available for checking: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘manydata’

Package suggested but not available for checking: ‘pointblank’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christiana Kartsonaki <christiana.kartsonaki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christiana",
                    family = "Kartsonaki",
                    role = c("aut", "cre"),
                    email = "christiana.kartsonaki@gmail.com")
as necessary.
Maintainer: ‘Dani Irawan <irawan_dani@yahoo.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmprHLApK/Rf337dc440c0b00d': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpuDvrNQ/ltx33b74f46f2172a/federal_election_results.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex Deckmyn <alex.deckmyn@meteo.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "S", "code", "by", "Richard", "A."),
                      family = "Becker",
                      role = "aut"),
               person(given = c("Allan", "R.", "Wilks.", "R", "version", "by", "Ray"),
                      family = "Brownrigg.",
                      role = "aut",
                      email = "Ray.Brownrigg@ecs.vuw.ac.nz"),
               person(given = "Alex",
                      family = "Deckmyn",
                      role = "cre",
                      email = "alex.deckmyn@meteo.be"))
as necessary.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Packages required but not available: 'leafem', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fmesher’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpHZaSHV/Rf33b7bdc67bbbc': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Package required but not available: ‘ggspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggpubr', 'smacof', 'plotly'

Package suggested but not available for checking: ‘polymapR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpx35S4Q/Rf337d7778a90aaf': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpS4pfuR/file33a89219893cf1', reason 'No space left on device'
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matt Taddy <mataddy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Taddy",
                    role = c("aut", "cre"),
                    email = "mataddy@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6gJkxs/file33a9f934a69dc0/map.groups.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘leafem’

Package suggested but not available for checking: ‘leafsync’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error: inferior call failed
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘cumulative_plot.Rd’, ‘hce_scenario_a.Rd’, ‘hce_scenario_b.Rd’, ‘hce_scenario_c.Rd’, ‘hce_scenario_d.Rd’, ‘hce_scenario_kccq3.Rd’
Maintainer: ‘Eliezer Gurarie <egurarie@umd.edu>’

Found the following (possibly) invalid file URI:
  URI: Eurodeer.org
    From: man/Michela.Rd
checkRd: (-1) locate_shift.Rd:29: Lost braces
    29 | \code{\link{quickfit}}, code{\link{locator}}
       |                             ^
checkRd: (-1) marcher-package.Rd:14: Lost braces; missing escapes or markup?
    14 | 1. \code{\link{estimate_shift}} {Estimate a range shift process.}
       |                                 ^
checkRd: (-1) marcher-package.Rd:16: Lost braces; missing escapes or markup?
    16 | 2. \code{\link{simulate_shift}} {Simulate a range shift process.}
       |                                 ^
checkRd: (-1) marcher-package.Rd:18: Lost braces; missing escapes or markup?
    18 | 3. \code{\link{plot.shiftfit}} {Visualize a range shift process.}
       |                                ^
checkRd: (-1) marcher-package.Rd:20: Lost braces; missing escapes or markup?
    20 | 4. \code{\link{test_rangeshift}} {Test whether a range shift occurred.}
       |                                  ^
checkRd: (-1) marcher-package.Rd:22: Lost braces; missing escapes or markup?
    22 | 5. \code{\link{test_return}} {Test whether a migration was a return migration.}
       |                              ^
checkRd: (-1) marcher-package.Rd:24: Lost braces; missing escapes or markup?
    24 | 6. \code{\link{test_stopover}} {Test whether a stopover occurred during a migration.}
       |                                ^
checkRd: (-1) quickfit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) quickfit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Andre Berchtold <andre.berchtold@unil.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ogier",
                      family = "Maitre",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Emery",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Oliver"),
                      family = "Buschor",
                      role = "aut"),
               person(given = "Andre",
                      family = "Berchtold",
                      role = c("aut", "cre"),
                      email = "andre.berchtold@unil.ch"))
as necessary.
Maintainer: ‘Junyi Chen <2655088079@qq.com>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Packages required but not available: 'scholar', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpsjHJbi/Rf33a03c14ce6c25': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Package required but not available: ‘furniture’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘marginme-Ex.R’ failed
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jeff Laake <jefflaake@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Laake",
                      role = c("aut", "cre"),
                      email = "jefflaake@gmail.com"),
               person(given = "Devin",
                      family = "Johnson",
                      role = "aut",
                      email = "devin.johnson@noaa.gov"),
               person(given = "Paul",
                      family = "Conn",
                      role = "aut",
                      email = "paul.conn@noaa.gov"),
               person(given = c("example", "for", "simHMM", "from", "Jay"),
                      family = "Rotella",
                      role = "aut"))
as necessary.
Running ‘testthat.R’ [10s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > test_check("markmyassignment")
  Loading required package: markmyassignment
  Saving _problems/test-mark_my_assignment-14.R
  Saving _problems/test-mark_my_assignment-23.R
  Saving _problems/test-mark_my_assignment-33.R
  [ FAIL 3 | WARN 0 | SKIP 6 | PASS 144 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-set_assignment.R:5:3', 'test-set_assignment.R:47:3',
    'test-set_assignment.R:70:3', 'test-set_assignment.R:101:3',
    'test-set_assignment.R:155:3', 'test-set_assignment.R:205:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-mark_my_assignment.R:14:3'): mark_my_assignment() ────────────
  Expected `length(y)` to equal 4.
  Differences:
  1/1 mismatches
  [1] 3 - 4 == -1
  ── Failure ('test-mark_my_assignment.R:23:3'): mark_my_assignment() ────────────
  Expected `length(y)` to equal 4.
  Differences:
  1/1 mismatches
  [1] 3 - 4 == -1
  ── Failure ('test-mark_my_assignment.R:33:3'): mark_my_assignment() ────────────
  Expected `length(y)` to equal 4.
  Differences:
  1/1 mismatches
  [1] 3 - 4 == -1
  
  [ FAIL 3 | WARN 0 | SKIP 6 | PASS 144 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Utkarsh", "J."),
                      family = "Dang",
                      role = c("aut", "cre"),
                      email = "utkarshdang@cunet.carleton.ca"),
               person(given = c("G.", "Brian"),
                      family = "Golding",
                      role = "aut"))
as necessary.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Balazs Dobi <dobibalazs@inf.elte.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Balazs", "Dobi", "&", "Andras"),
                      family = "Zempleni",
                      role = "aut"),
               person(given = "Balazs",
                      family = "Dobi",
                      role = "cre",
                      email = "dobibalazs@inf.elte.hu"))
as necessary.
checkRd: (-1) Markovchart.Rd:154: Lost braces
   154 | If either \code{h} or \code{k} have length greater than 1, then the \code{G-value} (weighted average of average cost and cost standard deviation) is calculated for all given values without optimisation. The value of the function in this case is a data frame of class code{Markov_grid} with \code{length(h)*length(k)} number of rows and three columns for \code{h}, \code{k} and the \code{G-value}.
       |                                                                                                                                                                                                                                                                                ^
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6u6I5b/file34175923dd8f22': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp6u6I5b/file34175923dd8f22': No such file or directory
Error in file(con, "r") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpyFRC8d/Rf33dff3694a3bfe': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

The Description field contains
  <arxiv:1312.0557>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘spatstat.linnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpnpFBXv/Rd2pdf33a9b4693f1737/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Viviane Philipps <viviane.philipps@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Viviane",
                      family = "Philipps",
                      role = c("aut", "cre"),
                      email = "viviane.philipps@u-bordeaux.fr"),
               person(given = "Cecile",
                      family = "Proust-Lima",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Prague",
                      role = "aut"),
               person(given = "Boris",
                      family = "Hejblum",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Commenges",
                      role = "aut"),
               person(given = "Amadou",
                      family = "Diakite",
                      role = "aut"))
as necessary.
checkRd: (-1) marqLevAlg-package.Rd:14: Lost braces; missing escapes or markup?
    14 | (GH^{-1}G).
       |     ^
Maintainer: ‘S. M. Barbosa <susana.barbosa@fc.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susana",
                      family = "Barbosa",
                      role = "aut"),
               person(given = c("S.", "M."),
                      family = "Barbosa",
                      role = "cre",
                      email = "susana.barbosa@fc.up.pt"))
as necessary.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Kelly McConville <kmcconville@fas.harvard.edu>’

The Description field contains
  (2017) <arXiv:1712.05708>.  The variance estimators which approximate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) focalCompare.Rd:14: Lost braces
    14 | \item{fun}{The function fun should take multiple numbers, and return a single number. For example mean, modal, min or max. It should also accept a na.rm argument (or ignore it, e.g. as one of the 'dots' arguments. For example, length will fail, but function(x, ...){na.omit(length(x))} works. (Specifications from `raster::focal`)}
       |                                                                                                                                                                                                                                                                          ^
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp5oXdzY/Rf33e315117ba6e4': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Bill Venables <bill.venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
checkRd: (-1) hr_levels.Rd:9-12: Lost braces
     9 | kernelBiweight <- function(x, mean = 0, sd = 1) {
       |                                                 ^
checkRd: (-1) hr_levels.Rd:33-36: Lost braces
    33 | kernelCosine <- function(x, mean = 0, sd = 1) {
       |                                               ^
checkRd: (-1) hr_levels.Rd:41-44: Lost braces
    41 | kernelEpanechnikov <- function(x, mean = 0, sd = 1) {
       |                                                     ^
checkRd: (-1) hr_levels.Rd:58-61: Lost braces
    58 | kernelOptCosine <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:65-68: Lost braces
    65 | kernelRectangular <- function(x, mean = 0, sd = 1) {
       |                                                    ^
checkRd: (-1) hr_levels.Rd:72-75: Lost braces
    72 | kernelSquaredCosine <- function(x, mean = 0, sd = 1) {
       |                                                      ^
checkRd: (-1) hr_levels.Rd:79-82: Lost braces
    79 | kernelTriangular <- function(x, mean = 0, sd = 1) {
       |                                                   ^
checkRd: (-1) hr_levels.Rd:86-89: Lost braces
    86 | kernelTricube <- function(x, mean = 0, sd = 1) {
       |                                                ^
checkRd: (-1) hr_levels.Rd:93-96: Lost braces
    93 | kernelTriweight <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:100-103: Lost braces
   100 | kernelUniform <- function(x, mean = 0, sd = 1) {
       |                                                ^
Maintainer: ‘Erik-Jan van Kesteren <e.vankesteren1@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erik-Jan",
                    family = "van Kesteren",
                    role = c("aut", "cre"),
                    email = "e.vankesteren1@uu.nl")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Nicolas E. Campione <ncampion@une.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nicolas", "E."),
                    family = "Campione",
                    role = c("aut", "cre"),
                    email = "ncampion@une.edu.au")
as necessary.
checkRd: (-1) CF2004.Rd:8: Lost braces; missing escapes or markup?
     8 |   \item{X2}{an optional second variable with same length as \code{X}, should the equation be multiple (see Details) {in mm}}
       |                                                                                                                     ^
Packages required but not available: 'flextable', 'ggspatial'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Maintainer: ‘David Degras <david.degras@umb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Degras",
                    role = c("aut", "cre"),
                    email = "david.degras@umb.edu")
as necessary.
checkRd: (-1) Rand.index.Rd:22: Lost braces; missing escapes or markup?
    22 | The two vectors \code{x} and \code{y} must have equal length. Given a set \eqn{S} and two partitions \eqn{X} and \eqn{Y} of \eqn{S}, the Rand index is the proportion of pairs of elements in \eqn{S} (out of all pairs) that are either concordant in both \eqn{X} and \eqn{Y} (i.e., they belong to the same member of \eqn{X} and to the same member of \eqn{Y}) or discordant (i.e., not concordant) in both \eqn{X} and {Y}.  
       |                                                                                                                                                                                                                                                                                                                                                                                                                              ^
checkRd: (-1) predict.matchFeat.Rd:21: Lost braces
    21 | The function \code{predict.matchFeat} finds the best matching for new feature vectors relative to an existing set of cluster/class centers. If code{object} results from a call to \code{\link{match.gaussmix}}, the same function is used for prediction (with fixed mean vectors and covariance matrices). In other cases, the function \code{\link{match.template}} is used for prediction. 
       |                                                                                                                                                    ^
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘weights’

Package suggested but not available for checking: ‘rrelaxiv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
checkRd: (-1) Match.Rd:90: Lost braces; missing escapes or markup?
    90 | expression in braces. For example, the condition "{[ab]*}" is equivalent
       |                                                   ^
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘mathml.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmperfINe/Rf3444b22eeda915': No space left on device

Quitting from mathml.Rmd:88-91 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from mathml.Rmd:88-91 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mathml.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘mathml.Rmd’

SUMMARY: processing the following file failed:
  ‘mathml.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘getting-started.Rmd’ using rmarkdown

Quitting from getting-started.Rmd:124-126 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `plot_grviz()`:
! The package "DiagrammeR" is required in order to produce Graphviz
  plots in RStudio Viewer.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
The package "DiagrammeR" is required in order to produce Graphviz plots
in RStudio Viewer.
--- failed re-building ‘getting-started.Rmd’

SUMMARY: processing the following file failed:
  ‘getting-started.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘P. Roebuck <proebuck1701@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "P.",
                    family = "Roebuck",
                    role = c("aut", "cre"),
                    email = "proebuck1701@gmail.com")
as necessary.
Maintainer: ‘Michael Friendly <friendly@yorku.ca>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("aut", "cre"),
                      email = "normmatloff@gmail.com"),
               person(given = "Jack",
                      family = "Norman",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Seung W. Choi <schoi@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seung", "W."),
                      family = "Choi",
                      role = c("aut", "cre"),
                      email = "schoi@austin.utexas.edu"),
               person(given = c("David", "R."),
                      family = "King",
                      role = "aut"))
as necessary.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘S. Thomas Kelly <tomkellygenetics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederick",
                      family = "Novomestky",
                      role = "aut",
                      email = "fnovomes@poly.edu"),
               person(given = c("S.", "Thomas"),
                      family = "Kelly",
                      role = "cre",
                      email = "tomkellygenetics@gmail.com"))
as necessary.
Maintainer: ‘Matthew Cserhati <csmatyi@protonmail.com>’

The Description field contains
  References: Mullner. <ArXiv:1109.2378>; Cserhati, Carter. (2020,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrey A Shabalin <andrey.shabalin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Matrix_eQTL_main.Rd:31: Lost braces; missing escapes or markup?
    31 |     {genepos} in the call of \code{Matrix_eQTL_main} function.
       |     ^
checkRd: (-1) Matrix_eQTL_main.Rd:35: Lost braces; missing escapes or markup?
    35 |     the data frames \code{snpspos} and {genepos}.
       |                                        ^
Maintainer: ‘Michael P.B. Gallaugher <michael_gallaugher@baylor.edu>’

The Description field contains
  <arXiv:2005.03861>. One key advantage of this model is the ability to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Package required but not available: ‘RCLabels’

Packages suggested but not available for checking: 'Hmisc', 'matsindf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matsbyname’

Packages suggested but not available for checking: 'Hmisc', 'RCLabels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following significant warnings:
  array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatTransMix.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-16 (Debian 16.1.0-1) 16.1.0’
Package required but not available: ‘beastier’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpaf4OmN/Rf3457777318d416': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Tom Prior <tomjamesprior@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Prior",
                    role = c("aut", "cre"),
                    email = "tomjamesprior@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘maxcombo-package.Rd’:
    https://doi.org/10.1177/0962280220931560
Maintainer: ‘"Alexander Jueterbock" <Alexander-Jueterbock@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Jueterbock",
                      role = "aut"),
               person(given = "\"Alexander",
                      family = "Jueterbock\"",
                      role = "cre",
                      email = "Alexander-Jueterbock@web.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) MaxentVariableSelection-package.Rd:46: Lost braces; missing escapes or markup?
    46 | \tab Tyberghein L, Verbruggen H, Pauly K, Troupin C, Mineur F and {De Clerck}, O (2012)\cr
       |                                                                   ^
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp8M6GAy/file36561e467ee68e/carw.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Bowen Deng <baolidakai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bowen",
                    family = "Deng",
                    role = c("aut", "cre"),
                    email = "baolidakai@gmail.com")
as necessary.
Maintainer: ‘Steven Phillips <mrmaxent@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steven",
                    family = "Phillips",
                    role = c("aut", "cre"),
                    email = "mrmaxent@gmail.com")
as necessary.
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shan",
                      family = "Ba",
                      role = c("aut", "cre"),
                      email = "shanbatr@gmail.com"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Maintainer: ‘Cinzia Franceschini <cinziafranceschini@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cinzia",
                      family = "Franceschini",
                      role = c("aut", "cre"),
                      email = "cinziafranceschini@msn.com"),
               person(given = "Nicola",
                      family = "Loperfido",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MazamaCoreUtils.Rcheck/00install.out’ for details.
Packages required but not available:
  'MazamaCoreUtils', 'MazamaSpatialUtils'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'MazamaSpatialUtils', 'MazamaCoreUtils', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MazamaCoreUtils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MazamaCoreUtils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Meilin Jiang <meilin.jiang@ufl.edu>’

The Description field contains
  <arXiv:2301.10064> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MBESS.Rcheck/00install.out’ for details.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Scott Foster <scott.foster@data61.csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Scott", "D."),
                      family = "Foster",
                      role = "aut"),
               person(given = "Scott",
                      family = "Foster",
                      role = "cre",
                      email = "scott.foster@data61.csiro.au"))
as necessary.
checkRd: (-1) findDescendingTrans.Rd:29: Lost braces
    29 |    Foster, S.D., Hosack, G.R., J. Monk, Lawrence, E., Barrett, N.S., Williams, A. and Przeslawski, P. (2020) Spatially-Balanced Designs for Transect-Based Surveys. Methods in Ecology and Evolution. emph{11}: 95--105
       |                                                                                                                                                                                                           ^
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukasz",
                    family = "Komsta",
                    role = c("aut", "cre"),
                    email = "lukasz.komsta@umlub.pl")
as necessary.
Packages required but not available: 'caret', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘consistencychecking-3.Rmd’ using rmarkdown
--- finished re-building ‘consistencychecking-3.Rmd’

--- re-building ‘dataexploration-1.Rmd’ using rmarkdown
--- finished re-building ‘dataexploration-1.Rmd’

--- re-building ‘mbnmadose-overview.Rmd’ using rmarkdown
--- finished re-building ‘mbnmadose-overview.Rmd’

--- re-building ‘metaregression-6.Rmd’ using rmarkdown
--- finished re-building ‘metaregression-6.Rmd’

--- re-building ‘nma_in_mbnmadose.Rmd’ using rmarkdown

Quitting from nma_in_mbnmadose.Rmd:32-41 [loaddata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'netmeta'
---
Backtrace:
    ▆
 1. └─base::library(netmeta)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'nma_in_mbnmadose.Rmd' failed with diagnostics:
there is no package called 'netmeta'
--- failed re-building ‘nma_in_mbnmadose.Rmd’

--- re-building ‘outputs-4.Rmd’ using rmarkdown
--- finished re-building ‘outputs-4.Rmd’

--- re-building ‘predictions-5.Rmd’ using rmarkdown
--- finished re-building ‘predictions-5.Rmd’

--- re-building ‘runmbnmadose-2.Rmd’ using rmarkdown
--- finished re-building ‘runmbnmadose-2.Rmd’

SUMMARY: processing the following file failed:
  ‘nma_in_mbnmadose.Rmd’

Error: Vignette re-building failed.
Execution halted
Problems with news in ‘inst/NEWS.Rd’:
  cannot open the connection
Maintainer: ‘Jae Keun Yoo <peter.yoo@ewha.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "Keun"),
                    family = "Yoo",
                    role = c("aut", "cre"),
                    email = "peter.yoo@ewha.ac.kr")
as necessary.

Reading Rd files failed with message:
  cannot open the connection
checkRd: (-1) SIGMAS.Rd:17: Lost braces; missing escapes or markup?
    17 | Sigmahat =  (Y^{T} Y)/n;
       |                ^
checkRd: (-1) SIGMAS.Rd:18: Lost braces; missing escapes or markup?
    18 | Sigmahat_fit = (Y^{T}  P_fx  Y)/n;
       |                   ^
checkRd: (-1) matpower.Rd:17: Lost braces; missing escapes or markup?
    17 | The function computes M^{power} for a symmetric matrix M. }
       |                         ^
Maintainer: ‘Hung Nguyen <ntthung@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hung",
                    family = "Nguyen",
                    role = c("aut", "cre"),
                    email = "ntthung@gmail.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpzezaDV/file353407673b191c': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpzezaDV/file353407673b191c': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Ning Ning <patricianing@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jinwen",
                      family = "Qiu",
                      role = "aut",
                      email = "qjwsnow_ctw@hotmail.com"),
               person(given = "Ning",
                      family = "Ning",
                      role = c("aut", "cre"),
                      email = "patricianing@gmail.com"))
as necessary.
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee15239@gmail.com"),
               person(given = c("Mahlet", "G."),
                      family = "Tadesse",
                      role = "aut"),
               person(given = c("Brent", "A."),
                      family = "Coull",
                      role = "aut"),
               person(given = c("Jacqueline", "R."),
                      family = "Starr",
                      role = "aut"))
as necessary.
Packages required but not available: 'rstatix', 'FSA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rosaria Lombardo <rosaria.lombardo@unicampania.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rosaria",
                      family = "Lombardo",
                      role = c("aut", "cre"),
                      email = "rosaria.lombardo@unicampania.it"),
               person(given = c("Eric", "J"),
                      family = "Beh",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Laszlo Baranyai <Baranyai.Laszlo@etk.szie.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Laszlo",
                    family = "Baranyai",
                    role = c("aut", "cre"),
                    email = "lbaranyai@atb-potsdam.de")
as necessary.
Packages required but not available: 'babette', 'beastier', 'mauricer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Heming Deng<dheming@ruc.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Yichen",
                      family = "Qin",
                      role = "aut"),
               person(given = "Heming",
                      family = "Deng",
                      role = c("aut", "cre"),
                      email = "dheming@ruc.edu.cn"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arno Fritsch <arno.fritsch@tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arno",
                    family = "Fritsch",
                    role = c("aut", "cre"),
                    email = "arno.fritsch@tu-dortmund.de")
as necessary.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Felipe Acosta Archila <acosta.felipe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felipe", "Acosta"),
                    family = "Archila",
                    role = c("aut", "cre"),
                    email = "acosta.felipe@gmail.com")
as necessary.
Maintainer: ‘Ben Sherwood <ben.sherwood@ku.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ben",
                      family = "Sherwood",
                      role = c("aut", "cre"),
                      email = "ben.sherwood@ku.edu"),
               person(given = "Brad",
                      family = "Price",
                      role = "aut"))
as necessary.

The Description field contains
  Sherwood (2018) <arXiv:1707.03530>. The MCEN model simultaneously
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Gregory R. Warnes <greg@warnes.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gregory", "R."),
                      family = "Warnes",
                      role = c("aut", "cre"),
                      email = "greg@warnes.net"),
               person(given = "Robert",
                      family = "Burrows",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) MCbound.precalc1.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCtest.Rd:39: Escaped LaTeX specials: \#
checkRd: (-1) MCtest.Rd:40: Escaped LaTeX specials: \#
Maintainer: ‘Zehua Zhou <zehuazho@buffalo.edu>’

The Description field contains
  Bisson and Jiwei Zhao (2021) <arXiv:2108.11589>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Wieland <thomas.wieland.geo@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.geo@googlemail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp979QnA/file3547e25d906a0b': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp979QnA/file3547e25d906a0b': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Ronja Foraita <foraita@bips.uni-bremen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Martin", "L."),
                      family = "Jäger",
                      role = "aut"),
               person(given = "Ronja",
                      family = "Foraita",
                      role = "cre",
                      email = "foraita@bips.uni-bremen.de"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...........Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphmfGJ0/file3638237f0e723a': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmphmfGJ0/file3638237f0e723a': No such file or directory
Error in file(con, "r") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpZK1oGW/Rf34b1d5546b2a5': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Jarrod Hadfield <j.hadfield@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jarrod",
                    family = "Hadfield",
                    role = c("aut", "cre"),
                    email = "j.hadfield@ed.ac.uk")
as necessary.
Maintainer: ‘Mikhail V. Matz <matz@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "V."),
                    family = "Matz",
                    role = c("aut", "cre"),
                    email = "matz@utexas.edu")
as necessary.
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "geyer@umn.edu"),
               person(given = c("Leif", "T."),
                      family = "Johnson",
                      role = "aut",
                      email = "ltjohnson@google.com"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpzOLGqb/ltx35330c6677cd39/is.mcmcarray.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Encountered the following conversion/validation errors:
cannot open the connection
Package required but not available: ‘mc2d’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'haven', 'labelled'

Package suggested but not available for checking: ‘mcmsupply’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ecr', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hannah Comiskey <hannah.comiskey.2015@mumail.ie>’

The Description field contains
  <arXiv:2212.03844>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘boot.pval’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Russell S. Pierce <russell.s.pierce@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Russell", "S."),
                    family = "Pierce",
                    role = c("aut", "cre"),
                    email = "russell.s.pierce@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘summary.mcpmod_simulation.R’
Packages required but not available: 'officer', 'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bjoern Bornkamp <bornkamp@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bjoern",
                      family = "Bornkamp",
                      role = c("aut", "cre"),
                      email = "bornkamp@statistik.tu-dortmund.de"),
               person(given = "Jose",
                      family = "Pinheiro",
                      role = "aut"),
               person(given = "Frank",
                      family = "Bretz",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Daniel Gerhard <00gerhard@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ahmed N. Albatineh <aalbatineh@hsc.edu.kw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ahmed", "N."),
                      family = "Albatineh",
                      role = c("aut", "cre"),
                      email = "aalbatineh@hsc.edu.kw"),
               person(given = c("Meredith", "L."),
                      family = "Wilcox",
                      role = "aut"),
               person(given = "Bashar",
                      family = "Zogheib",
                      role = "aut"),
               person(given = "Magdalena",
                      family = "Niewiadomska-Bugaj",
                      role = "aut"))
as necessary.
checkRd: (-1) mcvis.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mcvis.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mcvis.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'logistf', 'mgm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .....................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptNUTvX/ltx360da0450f95e/plotDistances.ddsimcares.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Benjamin Christoffersen <boennecd@gmail.com>’

The Description field contains
  <arXiv:2102.02642>. The method is related to Hoff (2007)
  <doi:10.1214/07-AOAS107> and Zhao and Udell (2019) <arXiv:1910.12845>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get_mdgc.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:37: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Mun-Gwan Hong <mun-gwan.hong@scilifelab.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mun-Gwan",
                    family = "Hong",
                    role = c("aut", "cre"),
                    email = "mun-gwan.hong@scilifelab.se")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) normalizeWithMA.Rd:19: Lost braces
    19 |         \item{expGroup}{ a \code{vector} of experimental grouping variable such as plate. The length of code{expGroup} must be same as the number of rows of \code{mD}.}
       |                                                                                                             ^
Maintainer: ‘Sarah Friedrich <sarah.friedrich@alumni.uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Ditzhaus",
                      role = "aut"),
               person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@alumni.uni-ulm.de"))
as necessary.

The Description field contains
  Ditzhaus, M. and Friedrich, S. (2018) <arXiv:1807.05504>.  Ditzhaus, M.
  and Pauly, M. (2018) <arXiv:1808.05627>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘E. F. Haghish <haghish@uio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("E.", "F."),
                    family = "Haghish",
                    role = c("aut", "cre"),
                    email = "haghish@uio.no")
as necessary.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.
Package required but not available: ‘miceadds’

Package which this enhances but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Guillaume Chapron <gchapron@carnivoreconservation.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Iadine",
                      family = "Chades",
                      role = "aut"),
               person(given = "Guillaume",
                      family = "Chapron",
                      role = c("aut", "cre"),
                      email = "gchapron@carnivoreconservation.org"),
               person(given = "Marie-Josee",
                      family = "Cros",
                      role = "aut"),
               person(given = "Frederick",
                      family = "Garcia",
                      role = "aut"),
               person(given = "Regis",
                      family = "Sabbadin",
                      role = "aut"))
as necessary.
checkRd: (-1) mdp_example_forest.Rd:36: Lost braces; missing escapes or markup?
    36 | Let {1, ... S} be the states of the forest. the Sth state being the oldest.
       |     ^
Maintainer: ‘Genzo Kaga <genzo.k-1321@ruri.waseda.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Genzo",
                    family = "Kaga",
                    role = c("aut", "cre"),
                    email = "genzo.k-1321@ruri.waseda.jp")
as necessary.
Package required but not available: ‘smacof’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'smacof', 'symbolicDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Packages required but not available: 'dbplyr', 'skimr'

Packages suggested but not available for checking:
  'etl', 'macleish', 'mosaic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Takumi Tsutaya <tsutayatakumi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takumi",
                    family = "Tsutaya",
                    role = c("aut", "cre"),
                    email = "tsutayatakumi@gmail.com",
                    comment = c(ORCID = "0000-0001-5104-5223"))
as necessary.
Packages required but not available: 'janitor', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘short-creek.qmd’ using html
[31m

processing file: short-creek.qmd
[39m[31mterminate called after throwing an instance of '[39m[31mstd::runtime_error'
[39m[31m  what():  Could not open file "/tmp/RtmpmLshoF/epiworldR-35551875f50e74/00103-episim_outbreak_size.csv" for writing.
[39m[33mWARN: Error encountered when rendering files[39m
Error: processing vignette 'short-creek.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
  -----------------------------
  
  
  processing file: short-creek.qmd
  [31mterminate called after throwing an instance of 'std::runtime_error'[39m
  [31mwhat(): Could not open file[39m
  [31m"/tmp/RtmpmLshoF/epiworldR-35551875f50e74/00103-episim_outbreak_size.csv" for[39m
  [31mwriting.[39m
  [33mWARN: Error encountered when rendering files[39m
  
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘short-creek.qmd’

SUMMARY: processing the following file failed:
  ‘short-creek.qmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'dcm2', 'dcmstan'

Package suggested but not available for checking: ‘cmdstanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CohortCharacteristics', 'CohortConstructor', 'omopgenerics',
  'PatientProfiles'

Packages suggested but not available for checking:
  'CDMConnector', 'CodelistGenerator', 'visOmopResults', 'omock',
  'flextable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mark Edmondson <r@sunholo.com>’

The BugReports field in DESCRIPTION has
  https://github.com/MarkEdmondson1234/measurementProtocol
which should likely be
  https://github.com/MarkEdmondson1234/measurementProtocol/issues
instead.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
Packages required but not available:
  'flextable', 'haven', 'officer', 'semPlot', 'semptools', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dynlm’

Packages suggested but not available for checking: 'car', 'geepack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fda', 'refund'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘latentnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘rgexf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Linda Nab <lindanab4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Linda",
                    family = "Nab",
                    role = c("aut", "cre"),
                    email = "lindanab4@gmail.com")
as necessary.
Packages required but not available: 'ggpubr', 'glmmTMB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mectx.Rcheck/00install.out’ for details.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpJNl8lB/file35359734076975', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJNl8lB/file35359734076975/join_meddra.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Sergio Venturini <sergio.venturini@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sergio",
                      family = "Venturini",
                      role = c("aut", "cre"),
                      email = "sergio.venturini@unicatt.it"),
               person(given = "Jessica",
                      family = "Myers",
                      role = "aut"))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpNeDG2q/Rf3534a331e8a05c': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
checkRd: (-1) bhm.mcmc.Rd:37: Lost braces; missing escapes or markup?
    37 |   where \eqn{N_{ij}} denotes the number of times that the error profile \eqn{i} is cited on a report from hospital {j} and \eqn{y_{ij}} is the corresponding number of times that profile \eqn{i} in hospital \eqn{j} was reported with harm.
       |                                                                                                                    ^
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp19rTbf/file355a0f7da79ef4': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp19rTbf/file355a0f7da79ef4': No such file or directory
Error in file(con, "r") : cannot open the connection
checkRd: (-1) strings-internal.Rd:14: Lost braces
    14 | code{stringPlaceExact}: find location of string, using exact match
       |     ^
checkRd: (-1) strings-internal.Rd:17: Lost braces
    17 | code{stringPlaceFuzzy}: find location of string, using partial match
       |     ^
checkRd: (-1) strings-internal.Rd:19: Lost braces
    19 | code{stringPlace}: find location of string, generic
       |     ^
checkRd: (-1) strings-internal.Rd:21: Lost braces
    21 | code{checkFuzzy}: check for "close" string matches
       |     ^
Packages required but not available: 'medfate', 'meteoland'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘meteoland’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zizhuo Ren<zizhuoren@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zizhuo",
                      family = "Ren",
                      role = c("aut", "cre"),
                      email = "zizhuoren@gmail.com"),
               person(given = "Hesen",
                      family = "Peng",
                      role = "aut"),
               person(given = "Tianwei",
                      family = "Yu",
                      role = "aut"))
as necessary.
Packages required but not available: 'officer', 'flextable', 'pbkrtest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gautier Paux <gautier@paux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gautier",
                      family = "Paux",
                      role = c("aut", "cre"),
                      email = "gautier@paux.fr"),
               person(given = "Alex",
                      family = "Dmitrienko.",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CaseStudy02
    From: inst/doc/case-studies.html
Maintainer: ‘Chao Cheng <c.cheng@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chao", "Cheng;", "Donna", "Spiegelman;", "Fan"),
                      family = "Li",
                      role = "aut"),
               person(given = "Chao",
                      family = "Cheng",
                      role = "cre",
                      email = "c.cheng@yale.edu"))
as necessary.
Maintainer: ‘Teppei Yamamoto <tyamam@waseda.jp>’

Found the following (possibly) invalid file URI:
  URI: dtingley@gov.harvard.edu
    From: inst/doc/mediation-old.pdf
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xu Qin <xuqin@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@pitt.edu"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"))
as necessary.
Package required but not available: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gary Chan <kcgchan@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gary",
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "kcgchan@u.washington.edu")
as necessary.

The Description field contains
  effects by Chan, Imai, Yam and Zhang (2016) <arXiv:1601.03501>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) MED.Rd:25: Lost braces
    25 | The vector of treatment assignments of length \eqn{n}. Must be coded as \eqn{\{0,1} {{0,1}}.
       |                                                                                     ^
Maintainer: ‘Walter K Kremers <kremers.walter@mayo.edu>’

The Description field contains
  <arXiv:2106.14063> and is an extension of the works by Chen Y-H, Chen
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘model.Rmd’ using rmarkdown
--- finished re-building ‘model.Rmd’

--- re-building ‘performance.Rmd’ using rmarkdown
--- finished re-building ‘performance.Rmd’

--- re-building ‘article.Rnw’ using knitr

Quitting from article.Rnw:1191-1198 [glm]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'car'
---
Backtrace:
    x
 1. \-base::library("car")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'article.Rnw' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘article.Rnw’

SUMMARY: processing the following file failed:
  ‘article.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Karsten Donnay <kdonnay@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karsten",
                      family = "Donnay",
                      role = c("aut", "cre"),
                      email = "kdonnay@gmx.net"),
               person(given = "Eric",
                      family = "Dunford",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘meme.Rmd’ using rmarkdown

Quitting from meme.Rmd:28-37 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggimage'
---
Backtrace:
    ▆
 1. └─base::library(ggimage)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'meme.Rmd' failed with diagnostics:
there is no package called 'ggimage'
--- failed re-building ‘meme.Rmd’

SUMMARY: processing the following file failed:
  ‘meme.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Bert Gunter <bgunter.4567@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bert",
                    family = "Gunter",
                    role = c("aut", "cre"),
                    email = "bgunter.4567@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp03kRdi/Rf355d792798d7e3': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Roy Wetherall <rwetherall@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roy",
                    family = "Wetherall",
                    role = c("aut", "cre"),
                    email = "rwetherall@gmail.com")
as necessary.
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mergedblocks.Rcheck/00install.out’ for details.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richard A. Bilonick <rabilonick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Richard", "A."),
                    family = "Bilonick",
                    role = c("aut", "cre"),
                    email = "rabilonick@gmail.com")
as necessary.
Package required but not available: ‘broom.mixed’

Package suggested but not available for checking: ‘rstanarm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'geepack', 'ggformula'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [5s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(messydates)
  > 
  > test_check("messydates")
  Starting 2 test processes.
  > test-class_duration.R: Converting to mdate class.
  > test-class_duration.R: Converting to mdate class.
  Error in file(file, mode) : cannot open the connection
  Calls: test_check ... FUN -> <Anonymous> -> rs_call -> save_function_to_temp
  Execution halted
Maintainer: ‘François Grolleau <francois.grolleau@aphp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "François",
                    family = "Grolleau",
                    role = c("aut", "cre"),
                    email = "francois.grolleau@aphp.fr")
as necessary.
Maintainer: ‘Jingyi Guo <jingyi.guo@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jingyi",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "jingyi.guo@ntnu.no"),
               person(given = "Andrea",
                      family = "Riebler",
                      role = "aut",
                      email = "andrea.riebler@ntnu.no"))
as necessary.
Maintainer: ‘Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jack",
                      family = "Bowden",
                      role = "aut",
                      email = "j.bowden@bristol.ac.uk",
                      comment = "conception"),
               person(given = "Christopher",
                      family = "Jackson",
                      role = c("aut", "cre"),
                      email = "chris.jackson@mrc-bsu.cam.ac.uk",
                      comment = "programming"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘MetaAnalyser.Rd’:
    http://dx.doi.org/10.1080/00031305.2016.1165735
Maintainer: ‘Xin Yang <xyang.krystal@gmail.com>’

The Description field contains
  Luo et al. (2016) <arXiv:1505.05687>, sample standard deviation
  estimators by Wan et al. (2014) <arXiv:1407.8038>, and the best linear
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘metabodecon-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpjb8Eyr/file3652d64149ee5e/metabodecon_file.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Claire Gormley <claire.gormley@ucd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nyamundanda",
                      family = "Gift",
                      role = "aut"),
               person(given = c("Isobel", "Claire"),
                      family = "Gormley",
                      role = "aut"),
               person(given = "Lorraine",
                      family = "Brennan.",
                      role = "aut"),
               person(given = "Claire",
                      family = "Gormley",
                      role = "cre",
                      email = "claire.gormley@ucd.ie"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'ggimage', 'meta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.