Running ‘testthat.R’ [40s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > 
  > library(testthat)
  > library(cograph)
  > 
  > test_check("cograph")
  Tracing function "splot" in package "namespace:cograph"
  Untracing function "splot" in package "namespace:cograph"
  Tracing function "splot" in package "namespace:cograph"
  Untracing function "splot" in package "namespace:cograph"
  Cograph Network Summary
  ======================
  
  Structure:
    Nodes: 3 
    Edges: 3 
    Type: Undirected 
  
  Edge Statistics:
    Min weight: 1 
    Max weight: 1 
    Mean weight: 1 
  
  Node Labels:
     1, 2, 3 
  
  Layout: not computed 
  Saving _problems/test-coverage-plot-permutation-40-825.R
  Saved to: /tmp/RtmpThH0Nx/file3a16a26a0f7e7.png
  Saved to: /tmp/RtmpThH0Nx/file3a16a2642e5a0d.png
  Saved to: /tmp/RtmpThH0Nx/file3a16a253d5cbd0.png
  Saved to: /tmp/RtmpThH0Nx/file3a16a25b145867.png
  [ FAIL 1 | WARN 8 | SKIP 175 | PASS 1153 ]
  
  ══ Skipped tests (175) ═════════════════════════════════════════════════════════
  • On CRAN (154): 'test-assortativity.R:1:1', 'test-build-mcml.R:8:1',
    'test-centrality-batch3.R:6:1', 'test-centrality-equivalence-report.R:27:1',
    'test-centrality-extended.R:5:1', 'test-centrality-zoo.R:5:1',
    'test-centrality.R:3:1', 'test-cluster-metrics.R:8:1',
    'test-coverage-100pct-final.R:9:1', 'test-coverage-100pct-v2.R:9:1',
    'test-coverage-100pct.R:5:1', 'test-coverage-aes-edges-41.R:9:1',
    'test-coverage-aes-nodes-42.R:9:1', 'test-coverage-centrality-40.R:6:1',
    'test-coverage-class-layout-40.R:8:1',
    'test-coverage-class-network-40.R:10:1',
    'test-coverage-class-network-41.R:8:1',
    'test-coverage-cluster-metrics-40.R:9:1',
    'test-coverage-cluster-metrics-41.R:8:1', 'test-coverage-cograph-40.R:5:1',
    'test-coverage-cograph-41.R:7:1', 'test-coverage-communities-40.R:4:1',
    'test-coverage-communities-41.R:9:1', 'test-coverage-from-qgraph-40.R:8:1',
    'test-coverage-input-igraph-41.R:8:1', 'test-coverage-input-igraph-42.R:8:1',
    'test-coverage-input-parse-40.R:8:1', 'test-coverage-input-qgraph-41.R:8:1',
    'test-coverage-input-statnet-41.R:9:1', 'test-coverage-input-tna-40.R:10:1',
    'test-coverage-layout-circle-41.R:10:1',
    'test-coverage-layout-gephi-fr-40.R:5:1',
    'test-coverage-layout-groups-41.R:10:1',
    'test-coverage-layout-groups-42.R:9:1', 'test-coverage-layout-oval-40.R:9:1',
    'test-coverage-layout-registry-40.R:7:1',
    'test-coverage-layout-registry-41.R:9:1',
    'test-coverage-layout-spring-40.R:9:1',
    'test-coverage-methods-plot-42.R:9:1',
    'test-coverage-methods-print-40.R:9:1',
    'test-coverage-methods-print-42.R:9:1', 'test-coverage-mlna-40.R:8:1',
    'test-coverage-mlna-41.R:8:1', 'test-coverage-motifs-40.R:9:1',
    'test-coverage-motifs-41.R:9:1', 'test-coverage-motifs-43.R:9:1',
    'test-coverage-motifs-44.R:5:1', 'test-coverage-network-summary-40.R:8:1',
    'test-coverage-network-utils-40.R:11:1',
    'test-coverage-network-utils-42.R:11:1',
    'test-coverage-output-save-41.R:4:1', 'test-coverage-output-save-43.R:4:1',
    'test-coverage-palettes-40.R:9:1', 'test-coverage-plot-bootstrap-40.R:15:1',
    'test-coverage-plot-compare-40.R:10:1',
    'test-coverage-plot-heatmap-40.R:4:1', 'test-coverage-plot-hon-40.R:3:1',
    'test-coverage-plot-htna-40.R:4:1', 'test-coverage-plot-htna-41.R:11:1',
    'test-coverage-plot-htna-multi-40.R:9:1',
    'test-coverage-plot-htna-multi-41.R:12:1',
    'test-coverage-plot-mcml-40.R:733:3', 'test-coverage-plot-mcml-41.R:8:1',
    'test-coverage-plot-mcml-42.R:10:1',
    'test-coverage-plot-ml-heatmap-40.R:883:3',
    'test-coverage-plot-ml-heatmap-41.R:637:3',
    'test-coverage-plot-ml-heatmap-41.R:652:3',
    'test-coverage-plot-nestimate-40.R:10:1',
    'test-coverage-plot-permutation-40.R:951:3',
    'test-coverage-plot-permutation-40.R:962:3',
    'test-coverage-plot-transitions-41.R:5:1',
    'test-coverage-render-edges-41.R:20:1',
    'test-coverage-render-grid-40.R:10:1', 'test-coverage-render-grid-41.R:9:1',
    'test-coverage-render-grid-42.R:10:1',
    'test-coverage-render-nodes-40.R:14:1',
    'test-coverage-render-nodes-41.R:15:1', 'test-coverage-round5.R:5:1',
    'test-coverage-round6.R:5:1', 'test-coverage-round7.R:7:1',
    'test-coverage-scale-constants-43.R:9:1',
    'test-coverage-shapes-registry-40.R:10:1',
    'test-coverage-shapes-registry-41.R:11:1',
    'test-coverage-shapes-svg-41.R:18:1',
    'test-coverage-sonplot-qgraph-geometry-41.R:5:1',
    'test-coverage-splot-41.R:8:1', 'test-coverage-splot-42.R:8:1',
    'test-coverage-splot-arrows-40.R:9:1', 'test-coverage-splot-edges-40.R:5:1',
    'test-coverage-splot-geometry-40.R:5:1',
    'test-coverage-splot-labels-40.R:10:1', 'test-coverage-splot-nodes-40.R:5:1',
    'test-coverage-splot-params-41.R:5:1',
    'test-coverage-splot-polygons-41.R:5:1',
    'test-coverage-themes-registry-40.R:11:1',
    'test-coverage-themes-registry-41.R:11:1', 'test-coverage-tplot-40.R:8:1',
    'test-coverage-utils-colors-41.R:9:1',
    'test-coverage-utils-deprecation-41.R:9:1',
    'test-coverage-utils-geometry-43.R:11:1',
    'test-coverage-utils-validation-41.R:6:1', 'test-coverage-zzz-41.R:11:1',
    'test-disparity.R:3:1', 'test-edge-cases.R:271:3', 'test-edge-cases.R:401:3',
    'test-edge-cases.R:411:3', 'test-edge-cases.R:557:3',
    'test-edge-cases.R:571:3', 'test-edge-cases.R:589:3',
    'test-equiv-assortativity.R:11:1', 'test-equiv-cluster-quality.R:10:1',
    'test-equiv-communities.R:11:1', 'test-equiv-disparity.R:13:1',
    'test-equiv-edge-centrality.R:11:1', 'test-equiv-network-summary.R:10:1',
    'test-equiv-robustness.R:12:1', 'test-equiv-standalone-measures.R:9:1',
    'test-from-converters.R:8:1', 'test-integration.R:456:3',
    'test-layout-spring-animation.R:8:1', 'test-layouts-extended.R:8:1',
    'test-motifs-api.R:4:1', 'test-motifs-equivalence.R:10:1',
    'test-network-summary.R:3:1', 'test-overlay-communities.R:4:1',
    'test-palettes.R:8:1', 'test-plot-chord.R:1:1', 'test-plot-compare.R:385:3',
    'test-plot-forest.R:1:1', 'test-plot-mixed-network.R:313:3',
    'test-plot-mlvar.R:1:1', 'test-plot-simplicial.R:7:1',
    'test-qgraph-args.R:8:1', 'test-rich-club-equivalence.R:8:1',
    'test-robustness.R:9:1', 'test-shapes.R:1:1', 'test-simplify.R:3:1',
    'test-sn-edges.R:8:1', 'test-sn-nodes.R:8:1', 'test-sn-save.R:31:3',
    'test-sn-save.R:89:3', 'test-sn-save.R:113:3', 'test-sn-save.R:492:3',
    'test-soplot.R:8:1', 'test-splot.R:627:3', 'test-splot.R:725:3',
    'test-themes-extended.R:8:1', 'test-tier2-cross-package.R:14:1',
    'test-tier2-equivalence.R:9:1', 'test-tier2-features.R:4:1',
    'test-tna-integration.R:4:1', 'test-tna-temporal.R:273:3',
    'test-validate-nestimate-bootstrap-permutation.R:10:1',
    'test-visual-sweep.R:8:3'
  • {qgraph} is not installed (1): 'test-integration.R:78:3'
  • {tna} is not installed (20): 'test-coverage-plot-mcml-40.R:118:3',
    'test-coverage-plot-mcml-40.R:139:3', 'test-coverage-plot-mcml-40.R:1047:3',
    'test-coverage-plot-mcml-40.R:1061:3',
    'test-coverage-plot-ml-heatmap-40.R:806:3',
    'test-coverage-plot-ml-heatmap-40.R:823:3',
    'test-coverage-plot-permutation-40.R:841:3',
    'test-coverage-plot-permutation-40.R:859:3',
    'test-coverage-plot-permutation-40.R:875:3',
    'test-coverage-plot-permutation-40.R:891:3',
    'test-edge-label-coupling.R:149:3', 'test-integration.R:101:3',
    'test-plot-compare.R:268:3', 'test-plot-compare.R:283:3',
    'test-plot-compare.R:300:3', 'test-plot-compare.R:318:3',
    'test-plot-compare.R:335:3', 'test-plot-compare.R:549:3',
    'test-plot-compare.R:565:3', 'test-plot-compare.R:593:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-coverage-plot-permutation-40.R:823:3'): plot_permutation removes leading zeros from edge labels ──
  Expected `with_temp_png(plot_permutation(perm, edge_labels = TRUE))` not to throw any errors.
  Actually got a <simpleError> with message:
    could not open file '/tmp/RtmpThH0Nx/file3a16a25bca1374.png'
  
  [ FAIL 1 | WARN 8 | SKIP 175 | PASS 1153 ]
  Error:
  ! Test failures.
  Execution halted