Packages required but not available: 'survminer', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Packages suggested but not available for checking: 'ropls', 'xcms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Monica Calderon-Santiago <b42casam@uco.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monica",
                    family = "Calderon-Santiago",
                    role = c("aut", "cre"),
                    email = "b42casam@uco.es")
as necessary.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/metacoder.Rcheck/00install.out’ for details.
Package required but not available: ‘rio’

Packages suggested but not available for checking:
  'metaumbrella', 'epiR', 'meta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file() :
  cannot open file '/tmp/RtmpTahg1I/Rf360fd6345f5985': No space left on device
Error in file() : cannot open the connection
Calls: suppressPackageStartupMessages ... recurse -> recurse -> recurse -> processRdChunk -> file
Execution halted
These lines will be truncated in the PDF manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ajay Arunachalam <ajay.arunachalam08@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ajay",
                    family = "Arunachalam",
                    role = c("aut", "cre"),
                    email = "ajay.arunachalam08@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file() :
  cannot open file '/tmp/RtmpM3hIYv/Rf39127a20c66d7b': No space left on device
Error in file() : cannot open the connection
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Maintainer: ‘Lu Tang <lutang@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Tang",
                      role = c("aut", "cre"),
                      email = "lutang@umich.edu"),
               person(given = "Ling",
                      family = "Zhou",
                      role = "aut"),
               person(given = c("Peter", "X.K."),
                      family = "Song",
                      role = "aut"))
as necessary.
Maintainer: ‘Marc J. Lajeunesse <lajeunesse@usf.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘metaGE-vignette.Rmd’ using rmarkdown

Quitting from metaGE-vignette.Rmd:34-44 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'metaGE-vignette.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘metaGE-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘metaGE-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ville Satopää <ville.satopaa@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  (2020) <arXiv:2010.09971>.  A meta-analysis framework along with two
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) asympVar_LinReg.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_gamma_EB.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_gamma_EB.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_gamma_EB.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Frederico Mestre <mestre.frederico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederico",
                      family = "Mestre",
                      role = c("aut", "cre"),
                      email = "mestre.frederico@gmail.com"),
               person(given = "Fernando",
                      family = "Canovas",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Risk",
                      role = "aut"),
               person(given = "Ricardo",
                      family = "Pita",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Mira",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Beja.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) rland.graph.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
Error(s) in re-building vignettes:
  ...
--- re-building ‘ae-listing.Rmd’ using rmarkdown
--- finished re-building ‘ae-listing.Rmd’

--- re-building ‘ae-specific-subgroup.Rmd’ using rmarkdown
--- finished re-building ‘ae-specific-subgroup.Rmd’

--- re-building ‘ae-specific.Rmd’ using rmarkdown
--- finished re-building ‘ae-specific.Rmd’

--- re-building ‘ae-summary.Rmd’ using rmarkdown
--- finished re-building ‘ae-summary.Rmd’

--- re-building ‘exposure-adjusted-event-rate.Rmd’ using rmarkdown
--- finished re-building ‘exposure-adjusted-event-rate.Rmd’

Error in file(con, "w") : cannot open the connection
Calls: <Anonymous> -> R_runR
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp0Yd1mV/ltx3911fb29463158/fmt_ci.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpjMAXKq/Rf364d861f76d744': No space left on device

Quitting from introduction.Rmd:95-98 [ml_spline]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from introduction.Rmd:95-98 [ml_spline]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Samuel Blanck <samuel.blanck@univ-lille.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillemette",
                      family = "Marot",
                      role = c("aut", "cre")),
               person(given = "Samuel",
                      family = "Blanck",
                      role = "cre",
                      email = "samuel.blanck@univ-lille.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error in gzfile(file, "wb") : cannot open the connection
  Calls: <Anonymous> -> resaveRdaFiles -> save -> gzfile
  In addition: Warning message:
  In gzfile(file, "wb") :
    cannot open compressed file '/tmp/RtmpceqPMT/file3602072dd9fe61', probable reason 'No space left on device'
  Execution halted
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/metamorphr.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MetaNet.Rcheck/00install.out’ for details.
Packages required but not available: 'GGally', 'ggimage', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'textstem', 'lexicon'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Jason Griffin <jasongriffin138@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sora Yoon <ysora90@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sora",
                    family = "Yoon",
                    role = c("aut", "cre"),
                    email = "ysora90@gmail.com")
as necessary.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘metaRangePriorityQueue.Rd’ ‘metaRangeProcess.Rd’
Fatal error: cannot create 'R_TempDir'
install log ‘’ does not exist
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nanami Taketomi <nnmamikrn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nanami",
                      family = "Taketomi",
                      role = c("aut", "cre"),
                      email = "nnmamikrn@gmail.com"),
               person(given = "Takeshi",
                      family = "Emura",
                      role = "aut"))
as necessary.
Running examples in ‘metasnf-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: alluvial_cluster_plot
> ### Title: Alluvial plot of patients across cluster counts and important
> ###   features
> ### Aliases: alluvial_cluster_plot
> 
> ### ** Examples
> 
> input_dl <- data_list(
+     list(gender_df, "gender", "demographics", "categorical"),
+     list(diagnosis_df, "diagnosis", "clinical", "categorical"),
+     uid = "patient_id"
+ )
> 
> sc <- snf_config(input_dl, n_solutions = 1)
ℹ No distance functions specified. Using defaults.
ℹ No clustering functions specified. Using defaults.
> 
> sol_df <- batch_snf(input_dl, sc, return_sim_mats = TRUE)
> 
> sim_mats <- sim_mats_list(sol_df)
> 
> clust_fn_sequence <- list(spectral_two, spectral_four)
> 
> alluvial_cluster_plot(
+     cluster_sequence = clust_fn_sequence,
+     similarity_matrix = sim_mats[[1]],
+     dl = input_dl,
+     key_outcome = "gender",
+     key_label = "Gender",
+     extra_outcomes = "diagnosis",
+     title = "Gender Across Cluster Counts"
+ )
Error in loadNamespace(x) : there is no package called ‘ggalluvial’
Calls: alluvial_cluster_plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MetaStan.Rcheck/00install.out’ for details.
Maintainer: ‘Ilja M. Nolte <i.m.nolte@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ilja", "M."),
                    family = "Nolte",
                    role = c("aut", "cre"),
                    email = "i.m.nolte@umcg.nl")
as necessary.
Maintainer: ‘Ingmar Visser <i.visser@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hilde", "M.", "Huizenga", "&", "Ingmar"),
                      family = "Visser",
                      role = "aut"),
               person(given = "Ingmar",
                      family = "Visser",
                      role = "cre",
                      email = "i.visser@uva.nl"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'meta', 'metaConvert'

Package suggested but not available for checking: ‘epiR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = "Rui",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.
Maintainer: ‘Min Lu <m.lu6@umiami.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Min",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "m.lu6@umiami.edu")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/metawho.Rcheck/00install.out’ for details.
Maintainer: ‘Blake Robert Mills <blakerobertmills@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Blake", "Robert"),
                    family = "Mills",
                    role = c("aut", "cre"),
                    email = "blakerobertmills@gmail.com")
as necessary.
Maintainer: ‘Laura Mack <laum52@zedat.fu-berlin.de>’

The Description field contains
  <arXiv:2208.11438>].
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘ncdfgeom’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'caret', 'CAST'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Cory Merow <cory.merow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andy",
                      family = "Rominger",
                      role = "aut"),
               person(given = "Cory",
                      family = "Merow",
                      role = c("aut", "cre"),
                      email = "cory.merow@gmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ebar.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘ipd.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘meteESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘meteSSF.Rd’:
    \keyword{METE,}
    \keyword{multiplier,}
  File ‘predictESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘print.meteESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘sad.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘spd.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rSPDE’

Packages suggested but not available for checking:
  'INLA', 'inlabru', 'plotly', 'mapview', 'fmesher'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
prepare_Rd: cannot open file '/tmp/Rtmpo6fYPf/Rf35f053387bb7bf': No space left on device
Maintainer: ‘Adam L. Pintar <adam.pintar@nist.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Adam", "L."),
                      family = "Pintar",
                      role = c("aut", "cre"),
                      email = "adam.pintar@nist.gov"),
               person(given = c("Zachary", "H."),
                      family = "Levine",
                      role = "aut"))
as necessary.
Maintainer: ‘Hadrien Charvat  <h.charvat.ef@juntendo.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hadrien",
                      family = "Charvat",
                      role = c("aut", "cre"),
                      email = "h.charvat.ef@juntendo.ac.jp"),
               person(given = "Aurelien",
                      family = "Belot",
                      role = "aut"),
               person(given = "Juste",
                      family = "Goungounga",
                      role = "aut"))
as necessary.
Maintainer: ‘Cai Li <cai.li.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cai",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "cai.li.stats@gmail.com"),
               person(given = "Luo",
                      family = "Xiao",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggpubr', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘mfdb-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mfdb_dplyr
> ### Title: MareFrame DB dplyr interface
> ### Aliases: mfdb_dplyr_table mfdb_dplyr_survey_index mfdb_dplyr_division
> ###   mfdb_dplyr_sample mfdb_dplyr_predator mfdb_dplyr_prey
> 
> ### ** Examples
> 
> mdb <- mfdb(tempfile(fileext = '.duckdb'))
2026-06-07 15:21:25.391498 INFO:mfdb:Creating schema from scratch
2026-06-07 15:21:26.238372 INFO:mfdb:Taxonomy market_category no updates to make
2026-06-07 15:21:27.225065 INFO:mfdb:Schema up-to-date
> 
> # Include as many columns as possible
> mfdb_dplyr_sample(mdb)
Error in check_dbplyr() : 
  The package "dbplyr" is required to communicate with database backends.
Calls: mfdb_dplyr_sample ... tbl.DBIConnection -> check_dbplyr -> check_installed
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
mfdb_bulk 4.036  0.206   5.835
Error(s) in re-building vignettes:
  ...
--- re-building ‘import_hydrography_cmems.Rmd’ using rmarkdown
ok - extract mean bottom temperature by quarter and area
--- finished re-building ‘import_hydrography_cmems.Rmd’

1..1
# Looks like you passed all 1 tests.
--- re-building ‘population.Rmd’ using rmarkdown
ok - Group/filter by populations
--- finished re-building ‘population.Rmd’

1..1
# Looks like you passed all 1 tests.
--- re-building ‘tow_data.Rmd’ using rmarkdown
ok - Grouping / filtering by tow_depth
ok - Unaggregated tow data
ok - Using scale_index = 'tow_length'
ok - scale = 'tow_length', grouping by tow_depth
ok - Group by tow_bait_type
ok - Unaggregated tow_net_type
--- finished re-building ‘tow_data.Rmd’

1..6
# Looks like you passed all 6 tests.
--- re-building ‘trip.Rmd’ using rmarkdown
ok - trip_start_date = '2019-01-21'
ok - trip_start_port = mfdb_group(...)

Quitting from trip.Rmd:197-202 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `check_dbplyr()`:
! The package "dbplyr" is required to communicate with database
  backends.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'trip.Rmd' failed with diagnostics:
The package "dbplyr" is required to communicate with database backends.
--- failed re-building ‘trip.Rmd’

1..2
# Looks like you passed all 2 tests.
--- re-building ‘weightmeasurements.Rmd’ using rmarkdown
ok - measurements = c('overall', 'liver', 'gonad', 'stomach')
ok - measurements = c('stomach')
ok - measurements = c('liver', 'stomach')
ok - measurements = c('overall', 'gonad')
--- finished re-building ‘weightmeasurements.Rmd’

1..4
# Looks like you passed all 4 tests.
SUMMARY: processing the following file failed:
  ‘trip.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'FactoMineR', 'Hmisc', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mehmet Balcilar <mehmet@mbalcilar.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mehmet",
                    family = "Balcilar",
                    role = c("aut", "cre"),
                    email = "mehmet@mbalcilar.net")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpg3Gt7C/file39caae7b4d5a66/summary.mfrm_reporting_checklist.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘mfrmr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp0luWkF/file39dde81fb0f50e/plot_local_dependence_heatmap.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ..............Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRB56e5/ltx3a055e3b981735/plot_threshold_ladder.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Maintainer: ‘Alan Fernihough <alan.fernihough@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: http: //CRAN.R-project.org/package=mfx
    From: inst/doc/mfxarticle.pdf
    Message: Invalid URL: missing authority part
Error(s) in re-building vignettes:
  ...
--- re-building ‘Discriminability.Rmd’ using rmarkdown
--- finished re-building ‘Discriminability.Rmd’

--- re-building ‘MGC.Rmd’ using rmarkdown
--- finished re-building ‘MGC.Rmd’

--- re-building ‘class_simulations.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpEymSGI/Rf3ad7d218fe2bde': No space left on device

Quitting from class_simulations.Rmd:16-22 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from class_simulations.Rmd:16-22 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'class_simulations.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘class_simulations.Rmd’

--- re-building ‘dep_simulations.Rmd’ using rmarkdown
--- finished re-building ‘dep_simulations.Rmd’

SUMMARY: processing the following file failed:
  ‘class_simulations.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp9lg9Vz/ltx3afb683bb6241e/mgc.sims.rotation.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJq1Zdk/file3ab4595987b372': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpJq1Zdk/file3ab4595987b372': No such file or directory
Error in file(con, "r") : cannot open the connection
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘read_mgi_biotype_conflict_rpt.R’
Maintainer: ‘Masatoshi Katabuchi <mattocci27@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Masatoshi",
                      family = "Katabuchi",
                      role = c("aut", "cre"),
                      email = "mattocci27@gmail.com"),
               person(given = "Akihiro",
                      family = "Nakamura",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juhyun Kim <juhkim111@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yiwen",
                      family = "Zhang",
                      role = "aut",
                      email = "zhangyiwen1015@gmail.com"),
               person(given = "Hua",
                      family = "Zhou",
                      role = "aut",
                      email = "huazhou@ucla.edu"),
               person(given = "Juhyun",
                      family = "Kim",
                      role = "cre",
                      email = "juhkim111@ucla.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Safiye Celik <safiye@cs.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Safiye",
                    family = "Celik",
                    role = c("aut", "cre"),
                    email = "safiye@cs.washington.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'Hmisc', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nathan Carr <nathan.carr@maxar.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nathan",
                    family = "Carr",
                    role = c("aut", "cre"),
                    email = "nathan.carr@maxar.com")
as necessary.
Maintainer: ‘Irina Gaynanova <irinagn@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irina",
                    family = "Gaynanova",
                    role = c("aut", "cre"),
                    email = "irinagn@umich.edu")
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mapview', 'caret', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>’

The BugReports field in DESCRIPTION has
  https://github.com/richelbilderbeek/mhcnuggetsr
which should likely be
  https://github.com/richelbilderbeek/mhcnuggetsr/issues
instead.
Maintainer: ‘Kobi Perl <kobipe3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kobi",
                    family = "Perl",
                    role = c("aut", "cre"),
                    email = "kobipe3@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jared O'Connell <jaredoconnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jared",
                      family = "O'Connell",
                      role = c("aut", "cre"),
                      email = "jaredoconnell@gmail.com"),
               person(given = "Søren",
                      family = "Højsgaard",
                      role = "aut",
                      email = "sorenh@math.aau.dk"))
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
Maintainer: ‘Mohammed Sedki <Mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘MHTrajectoryR-package.Rd’:
    \keyword{Binary data, logistic regression, Metropo [TRUNCATED]
Packages required but not available: 'imp4p', 'mice'

Packages suggested but not available for checking: 'DAPAR', 'ProteoMM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

Packages suggested but not available for checking:
  'BIFIEsurvey', 'car', 'MBESS', 'mdmb', 'synthpop'

Packages which this enhances but not available for checking:
  'micemd', 'mitml', 'simputation'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'mice', 'mitml', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Package required but not available: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = "Geraldine",
                      family = "Henningsen",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/micEcon/micEconCES
which should likely be
  https://github.com/micEcon/micEconCES/issues
instead.
Packages required but not available: 'car', 'systemfit'

Package suggested but not available for checking: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Package required but not available: ‘systemfit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘miceDRF-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mice.impute.DRF
> ### Title: Imputation with Distributional Random Forests for 'mice'
> ### Aliases: mice.impute.DRF
> 
> ### ** Examples
> 
> library(mice)
Error in library(mice) : there is no package called ‘mice’
Execution halted
Package required but not available: ‘mice’

Packages suggested but not available for checking: 'VIM', 'broom.mixed'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sam Wilson <samwilson303@gmail.com>’

The Description field contains
  model by Stekhoven and Buhlmann <arXiv:1105.0828> to impute missing
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'ggpubr', 'DescTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mitml’

Packages suggested but not available for checking:
  'broom.mixed', 'haven', 'miceadds'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘micompr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: assumptions.cmpoutput
> ### Title: Get assumptions for parametric tests performed on output
> ###   comparisons
> ### Aliases: assumptions.cmpoutput
> 
> ### ** Examples
> 
> 
> # Create a cmpoutput object from the provided datasets
> cmp <- cmpoutput("All", 0.9, pphpc_ok$data[["All"]], pphpc_ok$obs_lvls)
> 
> # Get the assumptions for the parametric tests performed in cmp
> acmp <- assumptions(cmp)
MANOVA assumptions require 'MVN' and 'biotools' packages.
Error in `*tmp*`[[i]] : subscript out of bounds
Calls: assumptions -> assumptions.cmpoutput
Execution halted
Running ‘testthat.R’ [7s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright (c) 2016 Nuno Fachada
  > # Distributed under the MIT License (http://opensource.org/licenses/MIT)
  > 
  > library(testthat)
  > 
  > test_check("micompr")
  Loading required package: micompr
  Saving _problems/test_cmpoutput-220.R
  Saving _problems/test_micomp-284.R
  [ FAIL 2 | WARN 5 | SKIP 0 | PASS 320 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_cmpoutput.R:220:3'): assumptions.cmpoutput creates the correct object ──
  <subscriptOutOfBoundsError/error/condition>
  Error in ``*tmp*`[[i]]`: subscript out of bounds
  Backtrace:
      ▆
   1. ├─micompr::assumptions(cmp) at test_cmpoutput.R:220:3
   2. └─micompr:::assumptions.cmpoutput(cmp)
  ── Error ('test_micomp.R:284:3'): micomp assumptions have the correct properties ──
  <subscriptOutOfBoundsError/error/condition>
  Error in ``*tmp*`[[i]]`: subscript out of bounds
  Backtrace:
      ▆
   1. ├─micompr::assumptions(mic1a) at test_micomp.R:284:3
   2. └─micompr:::assumptions.micomp(mic1a)
   3.   └─base::lapply(obj, function(x) assumptions(x))
   4.     └─micompr (local) FUN(X[[i]], ...)
   5.       ├─micompr::assumptions(x)
   6.       └─micompr:::assumptions.cmpoutput(x)
  
  [ FAIL 2 | WARN 5 | SKIP 0 | PASS 320 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘paper.Rnw’ using knitr

Quitting from paper.Rnw:340-342 [sunspot3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `` `*tmp*`[[i]] ``:
! subscript out of bounds
---
Backtrace:
    x
 1. +-micompr::assumptions(cmp)
 2. \-micompr:::assumptions.cmpoutput(cmp)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'paper.Rnw' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘paper.Rnw’

--- re-building ‘tolatex-examples.Rnw’ using knitr
--- finished re-building ‘tolatex-examples.Rnw’

SUMMARY: processing the following file failed:
  ‘paper.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Aurelie Bertrand <aurelie.bertrand@uclouvain.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aurelie",
                      family = "Bertrand",
                      role = c("aut", "cre"),
                      email = "aurelie.bertrand@uclouvain.be"),
               person(given = "Catherine",
                      family = "Legrand",
                      role = "aut"),
               person(given = "Ingrid",
                      family = "Van Keilegom",
                      role = "aut"))
as necessary.
Running examples in ‘MIC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: table
> ### Title: Table
> ### Aliases: table table.default table.mic_validation
> 
> ### ** Examples
> 
> gold_standard <- c("<0.25", "8", "64", ">64")
> test <- c("<0.25", "2", "16", "64")
> val <- compare_mic(gold_standard, test)
> table(val)
Error in loadNamespace(x) : there is no package called ‘flextable’
Calls: table ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
as.sir_vectorised     4.902  0.259   6.324
subset.mic_validation 4.954  0.110   6.362
Maintainer: ‘Seong Hyun Hwang <krshh1412@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seong", "Hyun", "Hwang", "with", "contributions", "from", "Rachel", "Myoung"),
                      family = "Moon",
                      role = "aut"),
               person(given = c("Seong", "Hyun"),
                      family = "Hwang",
                      role = "cre",
                      email = "krshh1412@gmail.com"))
as necessary.
Packages required but not available: 'ggpubr', 'rstatix'

Package suggested but not available for checking: ‘dada2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api.R’ ‘handlers-static.R’ ‘static-assets.Rd’
Package required but not available: ‘rstatix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nancy R Xu <nancyranxu@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘adjusted.predictors.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
  File ‘micromacro.lm.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
    \keyword{variables,}
  File ‘micromacro.summary.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_dependencies.R’ ‘micromodal.R’ ‘micromodal.Rd’
    ‘use_micromodal.R’
Maintainer: ‘Lars Snipen <lars.snipen@nmbu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lars",
                      family = "Snipen",
                      role = c("aut", "cre"),
                      email = "lars.snipen@nmbu.no"),
               person(given = c("Kristian", "Hovde"),
                      family = "Liland",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp561Dtx/file38b1a9aa772ae': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp561Dtx/file38b1a9aa772ae': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'Hmisc', 'HH', 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Su Liwen <cpusullivan@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Su",
                    family = "Liwen",
                    role = c("aut", "cre"),
                    email = "cpusullivan@163.com")
as necessary.
Maintainer: ‘Nicholas Jhirad <lostnfound@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Jhirad",
                    role = c("aut", "cre"),
                    email = "lostnfound@gmail.com")
as necessary.
Maintainer: ‘Philipp Gaffert <philipp.gaffert@web.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘midastouch-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mice.impute.midastouch
> ### Title: Predictive Mean Matching with distance aided selection of donors
> ### Aliases: mice.impute.midastouch midastouch
> ### Keywords: mice
> 
> ### ** Examples
> 
> ## from R:: mice, slightly adapted ##
> 
> # do default multiple imputation on a numeric matrix
> library(midastouch)
> library(mice)
Error in library(mice) : there is no package called ‘mice’
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Ziegler <peter.ziegler@zi-mannheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Wellek",
                      role = "aut"),
               person(given = "Peter",
                      family = "Ziegler",
                      role = c("aut", "cre"),
                      email = "peter.ziegler@zi-mannheim.de"))
as necessary.
Packages required but not available: 'blorr', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mice', 'VIM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpj9SlFu/ltx39cbcd55167c96/mighty.metadata-options-params.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available:
  'manynet', 'autograph', 'netrics', 'ergm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘detect_segments.R’ ‘find_best_split.R’ ‘identify_migrations.R’
    ‘utils.R’
Maintainer: ‘Gergely Daróczi <daroczig@rapporter.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lajos",
                      family = "Bálint",
                      role = "aut",
                      email = "balint@demografia.hu"),
               person(given = "Gergely",
                      family = "Daróczi",
                      role = c("aut", "cre"),
                      email = "daroczig@rapporter.net"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'spatstat', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MIIVsem’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'TreeSummarizedExperiment'

Package suggested but not available for checking: ‘rsample’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zheng-Zheng",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "tang@biostat.wisc.edu")
as necessary.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]’
  Authors@R: ‘Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]’
Maintainer: ‘Mingcong Wu <wumingcong@ruc.edu.cn>’

The Description field contains
  <arXiv:2309.15585>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘JWileymisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Allison Throm <throm@wustl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allison",
                    family = "Throm",
                    role = c("aut", "cre"),
                    email = "throm@wustl.edu")
as necessary.
Maintainer: ‘Chia-Wei Hsu <Chia-Wei.Hsu@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Wei",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "chia-wei.hsu@stjude.org"),
               person(given = "Fang",
                      family = "Wang",
                      role = "aut"),
               person(given = "Rongji",
                      family = "Mu",
                      role = "aut"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"),
               person(given = "Guoying",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Michele Filosi <michele.filosi@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpGrrCsd/file3b377c6f43c1f8/run_game.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jorge Luis Ojeda Cabrera <jojeda@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jorge", "Luis", "Ojeda"),
                    family = "Cabrera",
                    role = c("aut", "cre"),
                    email = "jojeda@unizar.es")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘makeWidgetCmd.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘mapFuncToWidget.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUI.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUIhelpers.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUIinputWidget.Rd’:
    \keyword{
        
        utilities
        misc
      }
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate.R’ ‘formula.R’ ‘toy_data.R’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpT5OIsK/ltx3a110e68ea0c47/beta_samples.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Shwetank Lall <shwetanklall@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Man Jin <mj2149@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Man",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "mj2149@gmail.com"),
               person(given = "Adam",
                      family = "Polis",
                      role = "aut"),
               person(given = "Jonathan",
                      family = "Hartzel",
                      role = "aut"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Joe Cheng [cre, aut], Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Joe Cheng [cre, aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Sebastian O. Schneider <sschneider@coll.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "O."),
                      family = "Schneider",
                      role = c("aut", "cre"),
                      email = "sschneider@coll.mpg.de"),
               person(given = "Giulia",
                      family = "Baldini",
                      role = "aut"))
as necessary.
Maintainer: ‘Katharine M. Mullen <mullenkate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timur", "V."),
                      family = "Elzhov",
                      role = "aut"),
               person(given = c("Katharine", "M."),
                      family = "Mullen",
                      role = c("aut", "cre"),
                      email = "mullenkate@gmail.com"),
               person(given = "Andrej-Nikolai",
                      family = "Spiess",
                      role = "aut"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut"))
as necessary.
Maintainer: ‘Jixiang Wu <jixiang.wu@sdstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jixiang",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "jixiang.wu@sdstate.edu")
as necessary.
Packages required but not available: 'rsample', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) gof.estimates.Rd:59-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gof.estimates.Rd:63-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gof.estimates.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:63-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:71-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:92-95: Lost braces in \itemize; meant \describe ?
Running massageExamples to create ‘mipplot-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmptywfuD/file394c567ccd60b/read_iamc_xlsx.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘mipplot-first-steps.Rmd’ using rmarkdown

Quitting from mipplot-first-steps.Rmd:34-37 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mipplot-first-steps.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘mipplot-first-steps.Rmd’

SUMMARY: processing the following file failed:
  ‘mipplot-first-steps.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘David Moriña <dmorina@ub.edu>’

The Description field contains
  Hernández-Herrera G, Moriña D, Navarro A. (2020) <arXiv:2007.15031>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sim.data.Rd:11: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:12: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:14: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:15: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:16: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:17: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:27: Lost braces in \enumerate; meant \describe ?
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MIRES.Rcheck/00install.out’ for details.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristian Yones <cyones@sinc.unl.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cristian",
                    family = "Yones",
                    role = c("aut", "cre"),
                    email = "cyones@sinc.unl.edu.ar")
as necessary.

Found the following (possibly) invalid file URI:
  URI: cyones@sinc.unl.edu.ar
    From: inst/doc/miRNAss.pdf
Package required but not available: ‘CORElearn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Siyao",
                      family = "Liu",
                      role = "aut"))
as necessary.
Packages required but not available: 'globaltest', 'GlobalAncova'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpOl3lgv/Rf392bb64ffc7cb1': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpGWRaq0/ltx394c6a1ec04f36/linesTetrahedra.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Dai Feng <daifeng.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dai",
                    family = "Feng",
                    role = c("aut", "cre"),
                    email = "daifeng.stat@gmail.com")
as necessary.
sh: 1: cannot create /tmp/RtmpaSeShD/xshell39158f4d78150: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpaSeShD/xshell39158f4d78150': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Package required but not available: ‘mapview’

Packages suggested but not available for checking:
  'janitor', 'lexicon', 'skimr', 'textclean'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘miselect.Rmd’ using rmarkdown

Quitting from miselect.Rmd:75-82 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'mice'
---
Backtrace:
    ▆
 1. └─base::library(mice)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'miselect.Rmd' failed with diagnostics:
there is no package called 'mice'
--- failed re-building ‘miselect.Rmd’

SUMMARY: processing the following file failed:
  ‘miselect.Rmd’

Error: Vignette re-building failed.
Execution halted
/usr/bin/tar: trackdb/test/tracks/dense_track.track: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/tracks/dense_track.track: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/tracks/dense_track.track/.attributes: Cannot open: No such file or directory
/usr/bin/tar: trackdb/test/tracks/dense_track.track: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/tracks/dense_track.track/chr2: Cannot open: No such file or directory
/usr/bin/tar: trackdb/test/tracks/dense_track.track: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/tracks/dense_track.track/chr1: Cannot open: No such file or directory
/usr/bin/tar: trackdb/test/tracks/dense_track.track: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/tracks/dense_track.track/chrX: Cannot open: No such file or directory
/usr/bin/tar: trackdb/test/pssms: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/pssms: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/pssms/pssm.data: Cannot open: No such file or directory
/usr/bin/tar: trackdb/test/pssms: Cannot mkdir: No space left on device
/usr/bin/tar: trackdb/test/pssms/pssm.key: Cannot open: No such file or directory
/usr/bin/tar: trackdb/test/.ro_attributes: Cannot open: No space left on device
/usr/bin/tar: trackdb/test/reads: Cannot open: No space left on device
/usr/bin/tar: trackdb/test/chrom_sizes.txt: Cannot open: No space left on device
/usr/bin/tar: Exiting with failure status due to previous errors
Error in file(open = "w+", encoding = "UTF-8") : 
  cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Encountered the following conversion/validation errors:
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
Packages required but not available:
  'parsnip', 'recipes', 'rsample', 'stacks', 'tune', 'workflows'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpB8dalr/ltx3a420e735a6ce1/mispitools-package.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Zishu Zhan <zishu927@hotmail.com>’

The Description field contains
  Xiangjie Li and Jingxiao Zhang. (2022) <arXiv:2205.14994>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Faisal Maqbool Zahid <faisalmz99@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Faisal", "Maqbool"),
                    family = "Zahid",
                    role = c("aut", "cre"),
                    email = "faisalmz99@yahoo.com")
as necessary.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

The Description field contains
  A, Cabaña, A, Puig P. (2021) <arXiv:2003.09202v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpOsHMRk/ltx3951e0542e85f2/missCforest.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'Hmisc', 'mice', 'missMDA', 'VIM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'relsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Moritz Marbach <moritz.marbach@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Moritz",
                    family = "Marbach",
                    role = c("aut", "cre"),
                    email = "moritz.marbach@tamu.edu")
as necessary.

The Description field contains
  <arXiv:2107.05427>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running examples in ‘missDiag-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: missDiag
> ### Title: Comparing Observed and Imputed Values under MAR and MCAR
> ### Aliases: missDiag
> 
> ### ** Examples
> 
> 
> # Compare random value imputation 
> # with predictive mean imputation 
> # under MCAR
> 
> diag_rng <- missDiag( 
+  original=anes08, 
+  imputed=anes08_rng, 
+  verbose = 1,
+  adjust = 'none',
+  formula = time ~ .)
Error in loadNamespace(x) : there is no package called ‘mice’
Calls: missDiag ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpXkwq7I/file39b801113650ac': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpXkwq7I/file39b801113650ac': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggpubr', 'ggmcmc', 'BCEA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FactoMineR', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mice', 'plsRglm', 'VIM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘missRanger-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpeztp4M/file39152a2331da6b/summary.missRanger.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptJek4B/ltx3d144ac7f7fb8/missSBM-package.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Sara Rejeb <sara.rejeb@live.fr>’

The Description field contains
  <arXiv:2202.07963>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpCLBS1w/file3930c949e258b6': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpCLBS1w/file3930c949e258b6': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Simon Grund <simon.grund@uni-hamburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Grund",
                      role = c("aut", "cre"),
                      email = "simon.grund@uni-hamburg.de"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = "aut"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.
Package required but not available: ‘haven’

Packages suggested but not available for checking:
  'mice', 'miceadds', 'geepack', 'glmmTMB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
checkRd: (-1) PV.Rd:14: Lost braces
    14 | plausible value in turn; with code{rewrite=FALSE} a new data set is
       |                                   ^
Rd conversion errors:
Converting parsed Rd's to LaTeX ......Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpFYlHXL/ltx3b0ad732edfdfd/mix_variance-methods.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Teimouri",
                    role = c("aut", "cre", "cph", "ctb"),
                    email = "teimouri@aut.ac.ir",
                    comment = c(ORCID = "0000-0002-5371-9364"))
as necessary.
Maintainer: ‘Georgios Papageorgiou <gpapageo@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Constantin Ahlmann-Eltze <artjom31415@googlemail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter Macdonald <pdmmac@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Macdonald",
                      role = c("aut", "cre"),
                      email = "pdmmac@mcmaster.ca"),
               person(given = c("with", "contributions", "from", "Juan"),
                      family = "Du",
                      role = "aut",
                      email = "duduyy@hotmail.com"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQHMOte/file39414e5f482515/pearson.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘latentcor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander White <whitealj@iu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/alexanderjwhite/mixedLSR
which should likely be
  https://github.com/alexanderjwhite/mixedLSR/issues
instead.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Michal",
                      family = "Trzesiok",
                      role = "aut"))
as necessary.
Maintainer: ‘Lorenzo Mercuri <lorenzo.mercuri@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lorenzo",
                      family = "Mercuri",
                      role = c("aut", "cre"),
                      email = "lorenzo.mercuri@unimi.it"),
               person(given = "Edit",
                      family = "Rroji",
                      role = "aut"))
as necessary.
Maintainer: ‘Marie-Karelle Riviere-Jourdan <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie-Karelle",
                      family = "Riviere-Jourdan",
                      role = c("aut", "cre"),
                      email = "eldamjh@gmail.com"),
               person(given = "France",
                      family = "Mentre",
                      role = "aut",
                      email = "france.mentre@inserm.fr"))
as necessary.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristina Tortora <grikris1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristina",
                      family = "Tortora",
                      role = c("aut", "cre", "cph"),
                      email = "grikris1@gmail.com"),
               person(given = "Aisha",
                      family = "ElSherbiny",
                      role = "com"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = c("aut", "cph")),
               person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cph")),
               person(given = c("and", "Paul", "D."),
                      family = "McNicholas",
                      role = c("aut", "cph")),
               person(given = c("Donald", "D."),
                      family = "Amos.",
                      role = "ctb"))
as necessary.
Packages required but not available: 'scran', 'Seurat', 'scuttle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mgm', 'qgraph', 'EGAnet', 'networktools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpCkn3E3/ltx39cbbd6badc48f/bcg.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Cassandro Davi Emer <cde@actisys.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Cassandro", "Davi"),
                    family = "Emer",
                    role = c("aut", "cre"),
                    email = "cde@actisys.org")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Brian C. Franczak <franczakb@macewan.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cre"),
                      email = "franczakb@macewan.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = c("aut", "cph")),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = c("aut", "cph")),
               person(given = c("Katherine", "L."),
                      family = "Burak",
                      role = "ctb"))
as necessary.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brian Stock <bstock09@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘ggmcmc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

The Description field contains
  <arXiv:2205.14067> and estimating parameters of the symmetric stable
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘treespace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul D. McNicholas <mcnicholas@math.mcmaster.ca>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Zihao Zheng <zihao.zheng@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihao",
                      family = "Zheng",
                      role = c("aut", "cre"),
                      email = "zihao.zheng@wisc.edu"),
               person(given = "Michael",
                      family = "A.Newton",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘diffviewer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Volkmann <alexander.volkmann@hu-berlin.de>’

The Description field contains
  Implementation for Volkmann, Umlauf, Greven (2023) <arXiv:2311.06409>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'refund', 'fdapace', 'sparseFLMM'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Yalin Wang <wangyalin@mail.sdu.edu.cn>’

The Description field contains
  (2022) <arXiv:2207.09633>. In this package, we provide the algorithms
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘miceadds’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘mkin-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpfG4jcD/file3a7347672b1315/nlme.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘FOCUS_D.rmd’ using rmarkdown
--- finished re-building ‘FOCUS_D.rmd’

--- re-building ‘FOCUS_L.rmd’ using rmarkdown

Quitting from FOCUS_L.rmd:167-172 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/RtmpPugvpm/file3c2cc778dd5ff2'
---
Backtrace:
    ▆
 1. ├─base::plot(...)
 2. └─mkin:::plot.mkinfit(...)
 3.   ├─base::plot(...)
 4.   └─graphics::plot.default(...)
 5.     └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FOCUS_L.rmd' failed with diagnostics:
could not open file '/tmp/RtmpPugvpm/file3c2cc778dd5ff2'
--- failed re-building ‘FOCUS_L.rmd’

--- re-building ‘mkin.rmd’ using rmarkdown
--- finished re-building ‘mkin.rmd’

--- re-building ‘twa.rmd’ using rmarkdown
--- finished re-building ‘twa.rmd’

--- re-building ‘cyan_pathway_2022_prebuilt.rnw’ using Sweave
--- finished re-building ‘cyan_pathway_2022_prebuilt.rnw’

--- re-building ‘dmta_parent_2022_prebuilt.rnw’ using Sweave
--- finished re-building ‘dmta_parent_2022_prebuilt.rnw’

--- re-building ‘dmta_pathway_2022_prebuilt.rnw’ using Sweave
--- finished re-building ‘dmta_pathway_2022_prebuilt.rnw’

SUMMARY: processing the following file failed:
  ‘FOCUS_L.rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Thomas Jaki <thomas.jaki@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Jaki",
                    role = c("aut", "cre"),
                    email = "thomas.jaki@protonmail.com")
as necessary.
Package required but not available: ‘MKinfer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("B", "N"),
                    family = "Mandal",
                    role = c("aut", "cre"),
                    email = "mandal.stat@gmail.com")
as necessary.
Packages required but not available: 'keras', 'tfprobability'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dmitriy Selivanov <selivanov.dmitriy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dmitriy",
                    family = "Selivanov",
                    role = c("aut", "cre"),
                    email = "selivanov.dmitriy@gmail.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpOS5uS0/ltx39e3923acb8e80/mlbench.xor.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available:
  'ConfusionTableR', 'parsnip', 'rsample', 'recipes', 'workflows',
  'caret', 'OddsPlotty'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Charte <fdavidcl@ugr.es>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) mldrGUI.Rd:22-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:26-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:32-34: Lost braces in \itemize; meant \describe ?
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprSvFRa/file39c9d932c5d7b9': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmprSvFRa/file39c9d932c5d7b9': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Kenneth Knoblauch <ken.knoblauch@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Knoblauch",
                      role = c("aut", "cre"),
                      email = "ken.knoblauch@inserm.fr"),
               person(given = c("Laurence", "T."),
                      family = "Maloney",
                      role = "aut"),
               person(given = c("based", "in", "part", "on", "C", "code", "written", "by", "Laurence", "T."),
                      family = "Maloney",
                      role = "aut"),
               person(given = c("J.", "N."),
                      family = "Yang",
                      role = "aut"))
as necessary.
Packages required but not available: 'ergm', 'GGally', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christopher R John <chris.r.john86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Christopher", "R"),
                    family = "John",
                    role = c("aut", "cre"),
                    email = "chris.r.john86@gmail.com")
as necessary.
Package required but not available: ‘kdry’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicola Sartori <nicola.sartori@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Sartori",
                      role = c("aut", "cre"),
                      email = "nicola.sartori@unipd.it"),
               person(given = "Alessandra",
                      family = "Salvan",
                      role = "aut"),
               person(given = "Luigi",
                      family = "Pace",
                      role = "aut"))
as necessary.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richard Harris <rich.harris@bris.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Richard",
                      family = "Harris",
                      role = c("aut", "cre"),
                      email = "rich.harris@bris.ac.uk"),
               person(given = "Dewi",
                      family = "Owen",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘aggdata.Rd’:
    http://dx.doi.org/10.5257/census/aggregate-2011-1
  File ‘ethnicities.Rd’:
    http://dx.doi.org/10.5257/census/aggregate-2011-1
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kdry', 'mlexperiments'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Qingzhao Yu <qyu@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingzhao",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "qyu@lsuhsc.edu"),
               person(given = "Bin",
                      family = "Li",
                      role = "aut"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
problems found in ‘opre_l.Rd’, ‘plot.mlmc.test.Rd’
Running massageExamples to create ‘mlmi-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpGgQwum/file39cc3dfea8557/refBasedCts.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Samara Kiihl <samara@ime.unicamp.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Samara",
                      family = "Kiihl",
                      role = c("aut", "cre"),
                      email = "samara@ime.unicamp.br"),
               person(given = c("Maria", "Jose"),
                      family = "Martinez-Garrido",
                      role = "aut"),
               person(given = "Arce",
                      family = "Domingo-Relloso",
                      role = "aut"),
               person(given = "Jose",
                      family = "Bermudez",
                      role = "aut"),
               person(given = "Maria",
                      family = "Tellez-Plaza",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'caret', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘varTestnlme’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Running examples in ‘mlogit-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hmftest
> ### Title: Hausman-McFadden Test
> ### Aliases: hmftest hmftest.formula hmftest.mlogit
> ### Keywords: htest
> 
> ### ** Examples
> 
> 
> ## from Greene's Econometric Analysis p. 731
> 
> data("TravelMode", package = "AER")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘AER’
Calls: data -> find.package
Execution halted
Running ‘AER.R’ [0s/0s]
  Running ‘greene.R’ [2s/3s]
Running the tests in ‘tests/AER.R’ failed.
Complete output:
  > data("BankWages", package = "AER")
  Error in find.package(package, lib.loc, verbose = verbose) : 
    there is no package called 'AER'
  Calls: data -> find.package
  Execution halted
Running the tests in ‘tests/greene.R’ failed.
Complete output:
  > library("mlogit")
  > data("TravelMode", package = "AER")
  Error in find.package(package, lib.loc, verbose = verbose) : 
    there is no package called 'AER'
  Calls: data -> find.package
  Execution halted
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Jan Graffelman <jan.graffelman@upc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mikhail Popov <mikhail@mpopov.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘example.simfun.R’ ‘fit.surrogate.R’
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘CORElearn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘mlr3batchmark-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: batchmark
> ### Title: Benchmark Experiments on Batch Systems
> ### Aliases: batchmark
> 
> ### ** Examples
> 
> tasks = list(mlr3::tsk("iris"), mlr3::tsk("sonar"))
> learners = list(mlr3::lrn("classif.featureless"), mlr3::lrn("classif.rpart"))
> resamplings = list(mlr3::rsmp("cv", folds = 3), mlr3::rsmp("holdout"))
> 
> design = mlr3::benchmark_grid(
+   tasks = tasks,
+   learners = learners,
+   resamplings = resamplings
+ )
> 
> reg = batchtools::makeExperimentRegistry(NA)
No readable configuration file found
Created registry in '/tmp/RtmpkKECxI/registry39f939510a7da2' using cluster functions 'Interactive'
> batchmark(design, reg = reg)
Adding algorithm 'run_learner'
Adding problem 'abc694dd29a7a8ce'
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpkKECxI/registry39f939510a7da2/problems/MFRGGNRZGRSGIMRZME3WCODDMU.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: batchmark -> <Anonymous> -> writeRDS -> saveRDS -> gzfile
Execution halted
Running massageExamples to create ‘mlr3fairness-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpJVyFlm/file3a9c964f8f8f14/compute_metrics.R': No space left on device
Execution halted
 NONE
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Running ‘testthat.R’ [81s/121s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("testthat")
  +   library("mlr3learners")
  +   test_check("mlr3learners")
  + }
  Loading required package: mlr3
  Saving _problems/test_regr_cv_glmnet-24.R
  Saving _problems/test_regr_glmnet-21.R
  [ FAIL 2 | WARN 0 | SKIP 4 | PASS 633 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • On CRAN (4): 'test_classif_nnet.R:2:1', 'test_classif_xgboost.R:2:1',
    'test_regr_nnet.R:2:1', 'test_regr_xgboost.R:2:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_regr_cv_glmnet.R:21:3'): selected_features ───────────────────
  Expected `learner$selected_features(0)` to equal `task$feature_names`.
  Differences:
  `actual`:   "am"                                                        
  `expected`: "am" "carb" "cyl" "disp" "drat" "gear" "hp" "qsec" "vs" "wt"
  
  ── Failure ('test_regr_glmnet.R:18:3'): selected_features ──────────────────────
  Expected `learner$selected_features(0)` to equal `task$feature_names`.
  Differences:
  `actual`:   "am"                                                        
  `expected`: "am" "carb" "cyl" "disp" "drat" "gear" "hp" "qsec" "vs" "wt"
  
  
  [ FAIL 2 | WARN 0 | SKIP 4 | PASS 633 ]
  Error:
  ! Test failures.
  Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpoGBnRW/file3a09704350cec9/sequence_helpers.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘mlr3misc-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpcFQ5ni/file3a0c1a55809ead/which_min.R': No space left on device
Execution halted
 NONE
cannot open the connection
prepare_Rd: cannot open file '/tmp/Rtmppc1580/Rf3a698b6f14ffca': No space left on device
problem found in ‘mlr_learners_regr.featureless.Rd’
Running massageExamples to create ‘mlr3-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpQ8kfKJ/file3aa0cb160b3a9d/ResultData.R': No space left on device
Execution halted
 NONE
Running ‘testthat.R’ [269s/426s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("checkmate")
  +   library("testthat")
  +   library("mlr3")
  +   test_check("mlr3")
  + }
  Saving _problems/test_resample-411.R
  Saving _problems/test_resample-412.R
  [ FAIL 2 | WARN 9 | SKIP 13 | PASS 17281 ]
  
  ══ Skipped tests (13) ══════════════════════════════════════════════════════════
  • Not on GitHub Actions (1): 'test_backward_compatibility.R:1:1'
  • On CRAN (10): 'test_Learner.R:672:3', 'test_Learner.R:939:3',
    'test_Learner.R:967:3', 'test_Learner.R:995:3', 'test_Learner.R:1034:3',
    'test_Measure.R:131:3', 'test_Task.R:907:1', 'test_parallel_future.R:103:3',
    'test_parallel_mirai.R:61:3', 'test_parallel_mirai.R:83:3'
  • empty test (1): 'test_Task.R:968:1'
  • {distr6} is not installed (1): 'test_PredictionRegr.R:54:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_resample.R:411:3'): callr during prediction triggers marshaling ──
  Expected `l2$marshaled` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test_resample.R:412:3'): callr during prediction triggers marshaling ──
  Expected `l2$model$marshaled$marshal_count` to equal 1L.
  Differences:
  `actual` is NULL
  `expected` is an integer vector (1)
  
  
  [ FAIL 2 | WARN 9 | SKIP 13 | PASS 17281 ]
  Error:
  ! Test failures.
  Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpzn9xSL/ltx18ed021a4e6b/TaskClassif.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmp1lt5bj/Rd2pdf39c47e545deea/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
Package required but not available: ‘GGally’

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Fatal error: cannot create 'R_TempDir'
Running examples in ‘mlr3viz-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: autoplot.PredictionClust
> ### Title: Plots for Cluster Predictions
> ### Aliases: autoplot.PredictionClust
> 
> ### ** Examples
> 
> if (mlr3misc::require_namespaces(c("clue", "mlr3cluster"), quietly = TRUE)) {
+ library(mlr3cluster)
+ 
+ task = tsk("usarrests")
+ learner = lrn("clust.kmeans", centers = 3)
+ object = learner$train(task)$predict(task)
+ 
+ head(fortify(object))
+ autoplot(object, task)
+ }
Error: The following packages could not be loaded: GGally
Execution halted
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘mlS3-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predict.wrap_caret
> ### Title: Predict method for mlS3 caret wrapper
> ### Aliases: predict.wrap_caret
> 
> ### ** Examples
> 
> 
> # Only runs if caret is installed
> 
> data(mtcars)
> 
> # Prepare data
> X_reg <- mtcars[, -1]  # All except mpg
> y_reg <- mtcars$mpg     # Target variable
> 
> # Split into train/test
> set.seed(123)
> idx_reg <- sample(nrow(X_reg), 0.7 * nrow(X_reg))
> X_train <- X_reg[idx_reg, ]
> y_train <- y_reg[idx_reg]
> X_test <- X_reg[-idx_reg, ]
> y_test <- y_reg[-idx_reg]
> 
> mod <- wrap_caret(X_train, y_train, method = "rf", mtry = 3)
Error in wrap_caret(X_train, y_train, method = "rf", mtry = 3) : 
  Package 'caret' is required for wrap_caret().
Please install it with: install.packages('caret')
Alternatively, use other mlS3 wrappers like wrap_xgboost() or wrap_ranger()
Execution halted
Packages required but not available: 'caret', 'tmap', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'opalr', 'fabR', 'madshapR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kdry', 'mlexperiments', 'mllrnrs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

Packages suggested but not available for checking: 'AER', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ben Gorman <bgorman@GormAnalysis.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Gorman",
                    role = c("aut", "cre"),
                    email = "bgorman@gormanalysis.com")
as necessary.
Running ‘2sample.R’ [2s/2s]
  Comparing ‘2sample.Rout’ to ‘2sample.Rout.save’ ... OK
  Running ‘Cox-Ex.R’ [4s/5s]
  Comparing ‘Cox-Ex.Rout’ to ‘Cox-Ex.Rout.save’ ... OK
  Running ‘bugfixes.R’ [2s/3s]
  Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ... OK
  Running ‘distr-Ex.R’ [0s/0s]
  Running ‘dpq-Ex.R’ [7s/7s]
  Comparing ‘dpq-Ex.Rout’ to ‘dpq-Ex.Rout.save’ ... OK
  Running ‘glm-Ex.R’ [2s/3s]
  Comparing ‘glm-Ex.Rout’ to ‘glm-Ex.Rout.save’ ... OK
  Running ‘lm-Ex.R’ [2s/3s]
  Comparing ‘lm-Ex.Rout’ to ‘lm-Ex.Rout.save’ ... OK
  Running ‘missing-responses.R’ [2s/2s]
  Running ‘mmlt_ll_sc.R’ [29s/35s]
  Running ‘polr-Ex.R’ [2s/2s]
  Comparing ‘polr-Ex.Rout’ to ‘polr-Ex.Rout.save’ ... OK
  Running ‘predict-Ex.R’ [3s/4s]
  Comparing ‘predict-Ex.Rout’ to ‘predict-Ex.Rout.save’ ... OK
  Running ‘subset.R’ [2s/2s]
  Comparing ‘subset.Rout’ to ‘subset.Rout.save’ ... OK
  Running ‘surv-Ex.R’ [2s/2s]
  Comparing ‘surv-Ex.Rout’ to ‘surv-Ex.Rout.save’ ... OK
Running the tests in ‘tests/distr-Ex.R’ failed.
Complete output:
  Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mlumr.Rcheck/00install.out’ for details.
Packages required but not available: 'qgraph', 'graphicalVAR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'parsnip', 'recipes', 'rsample', 'tune', 'workflows', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Deena", "M.A."),
                      family = "Gendoo",
                      role = "aut",
                      email = "deena.gendoo@utoronto.ca"),
               person(given = "Benjamin",
                      family = "Haibe-Kains",
                      role = c("aut", "cre"),
                      email = "benjamin.haibe.kains@utoronto.ca"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Qingzhao Yu <qyu@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingzhao",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "qyu@lsuhsc.edu"),
               person(given = "Bin",
                      family = "Li",
                      role = "aut"))
as necessary.
Packages required but not available: 'mma', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/Rtmpb1H9w4/file3a363b64f394', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpb1H9w4/file3a363b64f394/components.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'refund', 'cosinor2', 'accelerometry', 'ActCR', 'ActFrag', 'GGIR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sebastian Hönel <sebastian.honel@lnu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Hönel",
                    role = c("aut", "cre"),
                    email = "sebastian.honel@lnu.se")
as necessary.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Maintainer: ‘Kengo Nagashima <nshi1201@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mmcm-package.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
  File ‘mmcm.mvt.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
  File ‘mmcm.resamp.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jaejoon",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "jjsong2@mdanderson.org")
as necessary.
Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp8c3xXL/file3a7133118756c': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp8c3xXL/file3a7133118756c': No such file or directory
Error in file(con, "r") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘my-vignette.Rmd’ using rmarkdown

Quitting from my-vignette.Rmd:20-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    x
 1. \-base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘my-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘my-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Chaojie Wang <wang910930@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chaojie",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wang910930@163.com")
as necessary.
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
    62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
       |                                                                               ^
Maintainer: ‘Charles-Edouard Giguere <ce.giguere@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles-Edouard",
                    family = "Giguere",
                    role = c("aut", "cre"),
                    email = "ce.giguere@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
checkRd: (-1) mmeln.Rd:69: Lost braces; missing escapes or markup?
    69 |   \item{obj$M}{Number of total observations sum_{i=1}^N(pi)}
       |                                                 ^
Maintainer: ‘E. Lopez-Vizcaino <esther.lopez@ige.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "E.",
                      family = "Lopez-Vizcaino",
                      role = c("aut", "cre"),
                      email = "esther.lopez@ige.eu"),
               person(given = "M.J.",
                      family = "Lombardia",
                      role = "aut"),
               person(given = "D.",
                      family = "Morales",
                      role = "aut"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'broom.mixed', 'clusterSEs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iht_interpreter.Rd’ ‘lr_pow.Rd’ ‘pj_pow.Rd’ ‘replext_helpers.R’
    ‘replext_helpers_pgsql.R’ ‘rm_interpreter.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJRmftI/file3a4f11667f2f47/replext.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Nadezda Spiridovska <Spiridovska.N@tsi.lv>’

The Description field contains
  <arXiv:1901.09600v1> and algorithm of parameters estimation is based on
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘MMOC_vignettes.Rmd’ using rmarkdown

Quitting from MMOC_vignettes.Rmd:17-22 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MMOC_vignettes.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘MMOC_vignettes.Rmd’

SUMMARY: processing the following file failed:
  ‘MMOC_vignettes.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘David M Schruth <dschruth@anthropoidea.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "M"),
                    family = "Schruth",
                    role = c("aut", "cre"),
                    email = "dschruth@anthropoidea.org")
as necessary.
checkRd: (-1) average.fit.models.Rd:6: Lost braces; missing escapes or markup?
     6 | These function takes the output of pgls.iter and uses its list of objects { model fits, optimzations (e.g.AICc)} and performs a weighted average on the ctoefficients estimated in the former by weighting by the latter. The parameters can also optionally be converted to binary by specifying "binary=FALSE" or just running the alias wraper function for assessing evidence of variable importance (Burnham & Anderson 2000).
       |                                                                           ^
Maintainer: ‘David Winter <david.winter@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘"Tao Liu, PhD" <tliu@stat.brown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Tao",
                      family = "Liu"),
               person(given = c("PhD\"", "\"Yizhen"),
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "tliu@stat.brown.edu"),
               person(family = "ScM\"",
                      role = "aut",
                      email = "yizhen_xu@brown.edu"))
as necessary.
Maintainer: ‘Steve Condylios <steve.condylios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steve",
                    family = "Condylios",
                    role = c("aut", "cre", "cph"),
                    email = "steve.condylios@gmail.com",
                    comment = c(ORCID = "0000-0003-0599-844X"))
as necessary.
Maintainer: ‘Eoin O'Connell <eoin.m.oconnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eoin",
                    family = "O'Connell",
                    role = c("aut", "cre"),
                    email = "eoin.m.oconnell@gmail.com")
as necessary.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin J. Radford <benjamin.radford@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Benjamin", "J."),
                    family = "Radford",
                    role = c("aut", "cre"),
                    email = "benjamin.radford@gmail.com")
as necessary.
Maintainer: ‘Jarad Niemi <niemi@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jarad",
                    family = "Niemi",
                    role = c("aut", "cre"),
                    email = "niemi@iastate.edu")
as necessary.
Maintainer: ‘Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>’

The Description field contains
  (2020) <arXiv:2009.07662>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'keras', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mlVAR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de",
                    comment = c(ORCID = "0000-0002-8226-3132"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ricardo Pio Monti <ricardo.monti08@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ricardo", "Pio"),
                      family = "Monti",
                      role = c("aut", "cre"),
                      email = "ricardo.monti08@gmail.com"),
               person(given = "Christoforos",
                      family = "Anagnostopoulos",
                      role = "aut"),
               person(given = "Giovanni",
                      family = "Montana",
                      role = "aut"))
as necessary.
Maintainer: ‘Bruno Ebner <bruno.ebner@kit.edu>’

The Description field contains
  (2020) <arXiv:2004.07332> titled "Tests for multivariate normality -- a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BHEP.Rd’:
    https://doi.org/10.1006/jmva.1997.1684
    https://doi.org/10.1093/biomet/70.3.723
  File ‘HJG.Rd’:
    https://doi.org/10.1007/s11749-018-0589-z
  File ‘HJM.Rd’:
    https://doi.org/10.1017/S0266466618000154
  File ‘HV.Rd’:
    https://doi.org/10.1007/s10463-019-00720-8
  File ‘HZ.Rd’:
    https://doi.org/10.1080/03610929008830400
  File ‘MQ1.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘MQ2.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘SR.Rd’:
    https://doi.org/10.1016/j.jmva.2003.12.002
  File ‘test.BHEP.Rd’:
    https://doi.org/10.1006/jmva.1997.1684
  File ‘test.HJG.Rd’:
    https://doi.org/10.1007/s11749-018-0589-z
  File ‘test.HJM.Rd’:
    https://doi.org/10.1017/S0266466618000154
  File ‘test.HV.Rd’:
    https://doi.org/10.1007/s10463-019-00720-8
  File ‘test.HZ.Rd’:
    https://doi.org/10.1080/03610929008830400
  File ‘test.MQ1.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘test.MQ2.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘test.SR.Rd’:
    https://doi.org/10.1016/j.jmva.2003.12.002
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johann",
                      family = "Kraus",
                      role = "aut",
                      email = "johann.kraus@uni-ulm.de"),
               person(given = "Hans",
                      family = "Kestler",
                      role = "cre",
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
Maintainer: ‘Rishabh Gupta <rishabh.uk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rishabh",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "rishabh.uk@gmail.com"),
               person(given = c("Nicholas", "J."),
                      family = "Matzke",
                      role = "aut"),
               person(given = c("Dept.", "of", "Integrative"),
                      family = "Biology",
                      role = "aut"),
               person(given = "U.C.",
                      family = "Berkeley",
                      role = "aut"))
as necessary.
Checking relative paths failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
install log ‘’ does not exist
Maintainer: ‘Surajit Ray <surajit.ray@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Surajit",
                      family = "Ray",
                      role = c("aut", "cre"),
                      email = "surajit.ray@glasgow.ac.uk"),
               person(given = "Yansong",
                      family = "Cheng",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘choose.cluster.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘contourHMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘hard.HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘pHMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘plot.hmac.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘soft.HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘summary.hmac.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
checkRd: (-1) lientz.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lientz.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lientz.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modeest-package.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) vieu.Rd:56: Escaped LaTeX specials: \&
Running massageExamples to create ‘model4you-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp0ltxfD/file3afb2073bd8549/objfun.R': No space left on device
Execution halted
 NONE
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘modelbpp-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpRB672N/file3ab9ee493f29ae/partables_helpers.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp04yMKl/file3ab8ef260e3ef4/ischemic_stroke.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRNXA6G/file3aaaf838c78f3b': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpRNXA6G/file3aaaf838c78f3b': No such file or directory
Error in file(con, "r") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘kmeans.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpZv80EZ/Rf3affa1574c7a20': No space left on device

Quitting from kmeans.Rmd:12-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from kmeans.Rmd:12-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'kmeans.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘kmeans.Rmd’

--- re-building ‘linear-regression.Rmd’ using rmarkdown

Quitting from linear-regression.Rmd:12-24 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'dbplyr'
---
Backtrace:
    ▆
 1. └─base::library(dbplyr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'linear-regression.Rmd' failed with diagnostics:
there is no package called 'dbplyr'
--- failed re-building ‘linear-regression.Rmd’

SUMMARY: processing the following files failed:
  ‘kmeans.Rmd’ ‘linear-regression.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘DiagrammeR’

Package suggested but not available for checking: ‘FielDHub’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘auditor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpP5Kd8V/file3ab69a170e1228/get_model_env.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Peer Christensen <hr.pchristensen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peer",
                    family = "Christensen",
                    role = c("aut", "cre"),
                    email = "hr.pchristensen@gmail.com")
as necessary.
Maintainer: ‘Xinyong Tian <xinyongtian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xinyong",
                    family = "Tian",
                    role = c("aut", "cre"),
                    email = "xinyongtian@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/modelr.Rcheck/00install.out’ for details.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpaX0GFB/ltx3b7c9b6620691e/marginalLikelihood.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(modeltests)
  > 
  > test_check("modeltests")
  Saving _problems/test-check_glance_outputs-14.R
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 388 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-check_glance_outputs.R:12:3'): strict = FALSE ──────────────────
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─testthat::expect_silent(check_glance_outputs(gl, gl2, strict = FALSE)) at test-check_glance_outputs.R:12:3
   2.   └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   3.     └─testthat (local) .capture(...)
   4.       └─withr::with_output_sink(...)
   5.         └─withr:::set_output_sink(file = new, append = append, split = split)
   6.           └─withr:::output_sink(file = file, append = append, split = split)
   7.             └─base::sink(file = file, append = append, type = "output", split = split)
   8.               └─base::file(file, if (append) "a" else "w")
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 388 ]
  Error:
  ! Test failures.
  Execution halted
Packages required but not available:
  'modeltime', 'modeltime.resample', 'tune', 'rsample', 'workflows',
  'recipes', 'timetk'

Package suggested but not available for checking: ‘tidymodels’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'timetk', 'parsnip', 'workflows', 'plotly', 'janitor', 'tidymodels'

Packages suggested but not available for checking:
  'sparklyr', 'workflowsets', 'recipes', 'rsample', 'tune',
  'trelliscopejs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'modeltime', 'tune', 'rsample', 'workflows', 'recipes', 'timetk',
  'plotly'

Packages suggested but not available for checking:
  'tidymodels', 'tidyquant'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpD1yYK7/Rd2pdf3a84845fbf4bf8/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic-usage.Rmd’ using rmarkdown
--- finished re-building ‘basic-usage.Rmd’

--- re-building ‘data-masking.Rmd’ using rmarkdown

Quitting from data-masking.Rmd:33-41 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'rsample'
---
Backtrace:
    ▆
 1. └─base::library(rsample)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'data-masking.Rmd' failed with diagnostics:
there is no package called 'rsample'
--- failed re-building ‘data-masking.Rmd’

--- re-building ‘scaling-with-aws.Rmd’ using rmarkdown

Quitting from scaling-with-aws.Rmd:26-34 [Requisite Packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'rsample'
---
Backtrace:
    ▆
 1. └─base::library(rsample)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'scaling-with-aws.Rmd' failed with diagnostics:
there is no package called 'rsample'
--- failed re-building ‘scaling-with-aws.Rmd’

SUMMARY: processing the following files failed:
  ‘data-masking.Rmd’ ‘scaling-with-aws.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘openintro’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "Alberto", "Cardozo"),
                    family = "Delgado",
                    role = c("aut", "cre"),
                    email = "cardozorpackages@gmail.com")
as necessary.
Maintainer: ‘Philip Pallmann <pallmannp@cardiff.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
install log ‘’ does not exist
Running examples in ‘modmarg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: marg.ivreg
> ### Title: Predicted Margins for 'ivreg' objects from the 'AER' package
> ### Aliases: marg.ivreg
> 
> ### ** Examples
> 
> # From ?AER::ivreg
> 
> # data
> data("CigarettesSW", package = "AER")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘AER’
Calls: data -> find.package
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpyMNugq/file3aea9e45f9cb06': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpyMNugq/file3aea9e45f9cb06': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Maria Schelling <schelling.rmaintainer@vodafone.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Schelling",
                      role = c("aut", "cre"),
                      email = "schelling.rmaintainer@vodafone.de"),
               person(given = "Cang",
                      family = "Hui",
                      role = "aut"))
as necessary.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Packages required but not available: 'qgraph', 'systemfit'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'car', 'AER'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yongbo Gan <yongbogan@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yongbo",
                      family = "Gan",
                      role = c("aut", "cre"),
                      email = "yongbogan@whu.edu.cn"),
               person(given = "Zhijian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Wei",
                      family = "Mei",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "Peter.Langfelder@gmail.com"),
               person(given = "Steve",
                      family = "Horvath",
                      role = "aut",
                      email = "SHorvath@mednet.ucla.edu"))
as necessary.
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘moduleColor-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpW5Mo1K/file3ac5cb46a9e95e/fixDataStructure.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Bo Wei <ckris@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Wei",
                    role = c("aut", "cre"),
                    email = "ckris@163.com")
as necessary.
Maintainer: ‘Ruizhe Hou <houruizhe1210@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruizhe",
                      family = "Hou",
                      role = c("aut", "cre"),
                      email = "houruizhe1210@gmail.com"),
               person(given = "Lu",
                      family = "Lu",
                      role = "aut"))
as necessary.
Maintainer: ‘David Rossell <rosselldavid@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Rossell",
                      role = c("aut", "cre"),
                      email = "rosselldavid@gmail.com"),
               person(given = c("John", "D."),
                      family = "Cook",
                      role = "aut"),
               person(given = "Donatello",
                      family = "Telesca",
                      role = "aut"),
               person(given = "P.",
                      family = "Roebuck",
                      role = "aut"),
               person(given = "Oriol",
                      family = "Abril",
                      role = "aut"),
               person(given = "Miquel",
                      family = "Torrens",
                      role = "aut"))
as necessary.
Maintainer: ‘Dean Bodenham <deanbodenhambsse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dean",
                    family = "Bodenham",
                    role = c("aut", "cre"),
                    email = "deanbodenhambsse@gmail.com")
as necessary.
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lukasz",
                      family = "Komsta",
                      role = c("aut", "cre"),
                      email = "lukasz.komsta@umlub.pl"),
               person(given = "Frederick",
                      family = "Novomestky",
                      role = "aut",
                      email = "fnovomes@poly.edu"))
as necessary.
Maintainer: ‘Brett McClintock <brett.mcclintock@noaa.gov>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpuBCbnh/Rf3aacc7482d1d11': No space left on device
Maintainer: ‘Dan Murphy <chiefmurphy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Murphy",
                    role = c("aut", "cre"),
                    email = "chiefmurphy@gmail.com")
as necessary.
Maintainer: ‘Sasha D. Hafner <sasha.hafner@bce.au.dk>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpUee7kx/file3b77591265660a': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpUee7kx/file3b77591265660a': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Conversion of ‘README.md’ failed:
pandoc: /tmp/RtmpjD6vdb/pandoc3abbb26d302c06.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Maintainer: ‘Marcelo Reginato <reginatobio@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Reginato",
                    role = c("aut", "cre"),
                    email = "reginatobio@yahoo.com.br")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/monolix2rx.Rcheck/00install.out’ for details.
Maintainer: ‘Berwin A. Turlach <Berwin.Turlach@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Olli Saarela <olli.saarela@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olli",
                      family = "Saarela",
                      role = c("aut", "cre"),
                      email = "olli.saarela@utoronto.ca"),
               person(given = "Christian",
                      family = "Rohrbeck",
                      role = "aut"))
as necessary.
Maintainer: ‘Frank Busing <busing@fsw.leidenuniv.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Scott Kostyshak <scott.kostyshak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("This", "version", "Kay"),
                      family = "Pilz",
                      role = "aut"),
               person(given = c("Steffanie", "Titoff.", "Earlier", "developements", "by", "Holger"),
                      family = "Dette",
                      role = "aut"),
               person(given = "Kay",
                      family = "Pilz.",
                      role = "aut"),
               person(given = "Scott",
                      family = "Kostyshak",
                      role = "cre",
                      email = "scott.kostyshak@gmail.com"))
as necessary.
Maintainer: ‘Dennis Boos <boos@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dennis",
                      family = "Boos",
                      role = c("aut", "cre"),
                      email = "boos@ncsu.edu"),
               person(given = "Kevin",
                      family = "Matthew",
                      role = "aut"),
               person(given = "Jason",
                      family = "Osborne",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_extended_question.Rd’ ‘define_question.Rd’
    ‘define_questions_from_csv.Rd’ ‘define_questions_from_data_frame.Rd’
    ‘define_questions_from_excel.Rd’ ‘generate_xml.Rd’
    ‘generate_xml_file.Rd’
Running examples in ‘moodlequiz-Ex.R’ failed
The error occurred in:

Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Keon-Woong Moon <cardiomoon@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘sjmisc’

Package suggested but not available for checking: ‘ztable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Bialke <mosaic-projekt@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Bialke",
                      role = c("aut", "cre"),
                      email = "mosaic-projekt@uni-greifswald.de"),
               person(given = "Thea",
                      family = "Schwaneberg",
                      role = "aut",
                      email = "thea.schwaneberg@uni-greifswald.de"),
               person(given = "Rene",
                      family = "Walk",
                      role = "aut",
                      email = "rene.walk@uni-greifswald.de"))
as necessary.
Fatal error: cannot create 'R_TempDir'


See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) morphemepiece_cache_dir.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) morphemepiece_cache_dir.Rd:20-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) morphemepiece_cache_dir.Rd:22-24: Lost braces in \itemize; meant \describe ?
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpVMZ3Vm/ltx3b2dcb70fc6e19/morphemepiece_tokenize.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'Arothron', 'DescTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'candisc', 'car', 'heplots', 'StatMatch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘FossilSim’

Package suggested but not available for checking: ‘TreeSim’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/morseTKTD.Rcheck/00install.out’ for details.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Kaplan <kaplan@macalester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "T."),
                      family = "Kaplan",
                      role = "aut",
                      email = "kaplan@macalester.edu"),
               person(given = "Randall",
                      family = "Pruim",
                      role = "aut",
                      email = "rpruim@calvin.edu"),
               person(given = c("Nicholas", "J."),
                      family = "Horton",
                      role = "aut",
                      email = "nhorton@amherst.edu"),
               person(given = "Daniel",
                      family = "Kaplan",
                      role = "cre",
                      email = "kaplan@macalester.edu"))
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'ggformula', 'mosaic'

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Randall Pruim <rpruim@calvin.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Randall",
                      family = "Pruim",
                      role = c("aut", "cre"),
                      email = "rpruim@calvin.edu"),
               person(given = "Daniel",
                      family = "Kaplan",
                      role = "aut",
                      email = "kaplan@macalester.edu"),
               person(given = "Nicholas",
                      family = "Horton",
                      role = "aut",
                      email = "nhorton@amherst.edu"))
as necessary.
Package required but not available: ‘ggformula’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'dbplyr', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘William George Underwood <wgu2@princeton.edu>’

Found the following (possibly) invalid file URI:
  URI: arxivpaper.pdf
    From: inst/doc/motifcluster_vignette.pdf

The Description field contains
  and Cucuringu (2020) <arXiv:2004.01293>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmppGKvNh/file3b3d982450aa29/lsp_add_quality.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'ggraph', 'tidygraph'

Package suggested but not available for checking: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Andrew Tweedell <atweedell315@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘bin.Rd’:
    \keyword{bin,}
    \keyword{group,}
    \keyword{potentials,}
    \keyword{unit,}
  File ‘cumsum_mu_synch.Rd’:
    \keyword{recurrence,}
    \keyword{synchronization,}
    \keyword{unit,}
  File ‘mu_synch.Rd’:
    \keyword{Zscore,}
    \keyword{recurrence,}
    \keyword{sigmax,}
    \keyword{synchronization,}
    \keyword{unit,}
    \keyword{visual,}
  File ‘plot_bins.Rd’:
    \keyword{bin,}
    \keyword{plot,}
    \keyword{trains,}
    \keyword{unit,}
  File ‘recurrence_intervals.Rd’:
    \keyword{potentials,}
    \keyword{recurrence,}
    \keyword{unit,}
  File ‘visual_mu_synch.Rd’:
    \keyword{recurrence,}
    \keyword{synchronization,}
    \keyword{unit,}
  File ‘zscore_mu_synch.Rd’:
    \keyword{recurrence,}
    \keyword{synchronization,}
    \keyword{unit,}
Maintainer: ‘Birgit Erni <birgit.erni@uct.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Birgit", "Erni.", "Based", "on", "models", "developed", "by"),
                      family = "Underhill",
                      role = "aut",
                      email = "birgit.erni@uct.ac.za"),
               person(family = "Zucchini.",
                      role = "aut",
                      comment = "1988, 1990"),
               person(given = "Birgit",
                      family = "Erni",
                      role = "cre",
                      email = "birgit.erni@uct.ac.za"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘mpactr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpk5gH7D/file3bc6bc12704535/limit_cores.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘downstream_analyses.Rmd’ using rmarkdown
Warning: Duplicated chunk option(s) 'warning' in both chunk header and pipe comments of the chunk 'unnamed-chunk-19'.

Quitting from downstream_analyses.Rmd:35-45 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'downstream_analyses.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘downstream_analyses.Rmd’

--- re-building ‘mpactr.Rmd’ using rmarkdown

Quitting from mpactr.Rmd:24-28 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mpactr.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘mpactr.Rmd’

--- re-building ‘reference_semantics.Rmd’ using rmarkdown
--- finished re-building ‘reference_semantics.Rmd’

SUMMARY: processing the following files failed:
  ‘downstream_analyses.Rmd’ ‘mpactr.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'caret', 'RcmdrMisc'

Packages suggested but not available for checking:
  'car', 'np', 'vivid', 'AppliedPredictiveModeling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhu",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "zwang145@uthsc.edu"),
               person(given = c("with", "contributions", "from", "Achim"),
                      family = "Zeileis",
                      role = "aut"),
               person(given = "Simon",
                      family = "Jackman",
                      role = "aut"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "aut"),
               person(given = "Patrick",
                      family = "Breheny",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/zhuwang46/mpath
which should likely be
  https://github.com/zhuwang46/mpath/issues
instead.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ignacio López-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ignacio",
                    family = "López-de-Ullibarri",
                    role = c("aut", "cre"),
                    email = "ignacio.lopezdeullibarri@udc.es")
as necessary.
Maintainer: ‘Edgar Santos-Fernandez <edgar.santosfdez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Edgar",
                      family = "Santos-Fernandez",
                      role = c("aut", "cre"),
                      email = "edgar.santosfdez@gmail.com"),
               person(given = "Michele",
                      family = "Scagliarini.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute-contribution.R’ ‘compute-headcount-ratio-adjusted.R’
    ‘compute-headcount-ratio.R’ ‘compute-mpi.R’ ‘compute_mpi.Rd’
    ‘create-deprivation-matrix.R’ ‘define-deprivation.R’
    ‘define-mpi-specs.R’ ‘define_deprivation.Rd’ ‘define_mpi_specs.Rd’
    ‘helpers.R’ ‘save_mpi.R’ ‘write-as-excel.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘mpindex.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp7oBXuS/Rf3b6a90340ef748': No space left on device

Quitting from mpindex.Rmd:268-274 [unnamed-chunk-22]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from mpindex.Rmd:268-274 [unnamed-chunk-22]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mpindex.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘mpindex.Rmd’

SUMMARY: processing the following file failed:
  ‘mpindex.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Chris Pardy <cooliomcdude@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Pardy",
                    role = c("aut", "cre"),
                    email = "cooliomcdude@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘Rage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Phuc H. Nguyen <phuc.nguyen.rcran@gmail.com>’

The Description field contains
  Nguyen et al. (2022) <arXiv:2209.08036>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Conversion of ‘README.md’ failed:
pandoc: /tmp/Rtmp1jqmHS/pandoc3b1cfc381eea81.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘MPP_ME_QTL_detect.Rmd’ using rmarkdown
--- finished re-building ‘MPP_ME_QTL_detect.Rmd’

--- re-building ‘mppR_gen_vignette.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpqqgGAa/Rf3fdf687706ca7': No space left on device

Quitting from mppR_gen_vignette.Rmd:354-360 [design_connectivity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from mppR_gen_vignette.Rmd:354-360 [design_connectivity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mppR_gen_vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘mppR_gen_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘mppR_gen_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Francisco M. Fatore <fmfatore@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Francisco", "M."),
                      family = "Fatore",
                      role = c("aut", "cre"),
                      email = "fmfatore@gmail.com"),
               person(given = c("Samuel", "G."),
                      family = "Fadel",
                      role = "aut"))
as necessary.
Maintainer: ‘Kevin Burke <kevin.burke@ul.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Burke",
                    role = c("aut", "cre"),
                    email = "kevin.burke@ul.ie")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp8UU7zt/file3bc1e770700ab7': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp8UU7zt/file3bc1e770700ab7': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahdi",
                      family = "Teimouri",
                      role = c("aut", "cre"),
                      email = "teimouri@aut.ac.ir"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut"))
as necessary.
Maintainer: ‘Henrik Singmann <singmann@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get.mpt.fia.Rd:60: Lost braces
    60 | \item{lnconst}{When inequality constraints are present, \code{lnconst} serves as an adjustment of code{lnInt}. It estimates the logarithm of the proportion of parameter space [0,1]^S that satisfies those inequality constraints, and the log integral term is given by \code{lnInt+lnconst}.
       |                                                                                                       ^
checkRd: (-1) prediction.plot.Rd:38: Lost braces
    38 | The labels on the x-axis. Default is \code{Tree 1} to code{Tree n}.
       |                                                           ^
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paolo Frumento <paolo.frumento@unipi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paolo",
                    family = "Frumento",
                    role = c("aut", "cre"),
                    email = "paolo.frumento@unipi.it")
as necessary.
Packages required but not available: 'pch', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nii Okine <okinean@appstate.edu>’

Reading Rd files failed with message:
  cannot open the connection
Running massageExamples to create ‘mqriskR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpbZu06O/file3bc64f34d55ca8/Axybarn.R': No space left on device
Execution halted
 NONE
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmppzDege/file3c75ca3c263a90/resetEnv.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Jeremy Oguamalam <jeremy.oguamalam@tuwien.ac.at>’

The Description field contains
  implementation of Oguamalam et al. (2023) <arXiv:2307.13509>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'fda', 'fdapace'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rdflib’

Packages suggested but not available for checking: 'ows4R', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Simon Bond <simon.bond7@nhs.net>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Chih-Li Sung <sungchih@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chih-Li",
                    family = "Sung",
                    role = c("aut", "cre"),
                    email = "sungchih@msu.edu")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
install log ‘’ does not exist
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpWtKmyU/Rd2pdf3b4727ab35990/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
Package required but not available: ‘sjmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tom Stindl <t.stindl@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tom",
                      family = "Stindl",
                      role = c("aut", "cre"),
                      email = "t.stindl@unsw.edu.au"),
               person(given = "Feng",
                      family = "Chen",
                      role = "aut"))
as necessary.
Packages required but not available:
  'recipes', 'rsample', 'tune', 'workflows', 'finetune'

Packages suggested but not available for checking:
  'themis', 'MRFcov', 'ggnetwork', 'tidymodels', 'tidyverse', 'parsnip'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Jon Clayden <code@clayden.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Qi Yan <qy2253@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qi",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "qy2253@cumc.columbia.edu")
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Li",
                      family = "Pei",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Abirami S <abirami89@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abirami",
                    family = "S",
                    role = c("aut", "cre"),
                    email = "abirami89@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpw2DhCF/Rf3b6eda7ecb8dca': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Packages required but not available: 'GGally', 'Hmisc', 'mice', 'WGCNA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Siqi Xu <sqxu@hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siqi",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "sqxu@hku.hk")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Leo N. Geppert <geppert@statistik.uni-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Esther",
                      family = "Denecke",
                      role = "aut"),
               person(given = c("Leo", "N."),
                      family = "Geppert",
                      role = c("aut", "cre"),
                      email = "geppert@statistik.uni-dortmund.de"),
               person(given = "Steffen",
                      family = "Maletz",
                      role = "ctb"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "ctb"))
as necessary.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tianchen Qian <t.qian@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eliot",
                      family = "Wong-Toi",
                      role = "aut"),
               person(given = "Thabat",
                      family = "Dahdoul",
                      role = "aut"),
               person(given = "Tianchen",
                      family = "Qian",
                      role = c("aut", "cre"),
                      email = "t.qian@uci.edu"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Novia Permatasari <novia.permatasari@bps.go.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"),
               person(given = "Novia",
                      family = "Permatasari",
                      role = c("aut", "cre"),
                      email = "novia.permatasari@bps.go.id"))
as necessary.
Maintainer: ‘Novia Permatasari <novia.permatasari@bps.go.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Novia",
                      family = "Permatasari",
                      role = c("aut", "cre"),
                      email = "novia.permatasari@bps.go.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmprsMt0p/Rf3b8465629e1441': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
checkRd: (-1) n.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) n.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) n.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpzAGSYY/Rf3b84893b1130f8': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘msaR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: msaR
> ### Title: msaR
> ### Aliases: msaR
> 
> ### ** Examples
> 
> seqfile <- system.file("sequences","AHBA.aln",package="msaR")
> msaR(seqfile)
Warning in dir.create(target_dir) :
  cannot create dir 'lib/msa-1.0.2', reason 'No space left on device'
Error in normalizePath(target_dir, "/", TRUE) : 
  path[1]="lib/msa-1.0.2": No such file or directory
Calls: <Anonymous> ... lapply -> FUN -> copyDependencyToDir -> normalizePath
Execution halted
Maintainer: ‘Yonghui Dong <yonghui.dong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yonghui",
                    family = "Dong",
                    role = c("aut", "cre"),
                    email = "yonghui.dong@gmail.com")
as necessary.
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'cp4p', 'caret', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following significant warnings:
  Warning: Character length of actual argument longer than of dummy argument ‘trans’ (12/1) at (1) [-Wcharacter-truncation]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MSCMT.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-16 (Debian 16.1.0-1) 16.1.0’
* used Fortran compiler: ‘GNU Fortran (Debian 16.1.0-1) 16.1.0’
Maintainer: ‘Monica Calderon-Santiago <b42casam@uco.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monica",
                    family = "Calderon-Santiago",
                    role = c("aut", "cre"),
                    email = "b42casam@uco.es")
as necessary.
Maintainer: ‘Phil Ferriere <pferriere@hotmail.com>’

Found the following (possibly) invalid file URI:
  URI: ./CONDUCT.md
    From: README.md
Maintainer: ‘Phil Ferriere <pferriere@hotmail.com>’

Found the following (possibly) invalid file URI:
  URI: ./CONDUCT.md
    From: README.md
Maintainer: ‘Chris Bradley <cbradley05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Bradley",
                    role = c("aut", "cre"),
                    email = "cbradley05@gmail.com")
as necessary.
install log ‘’ does not exist
Maintainer: ‘Kei Hirose <mail@keihirose.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kei",
                    family = "Hirose",
                    role = c("aut", "cre"),
                    email = "mail@keihirose.com")
as necessary.
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(msgr)
  
  Attaching package: 'msgr'
  
  The following object is masked from 'package:testthat':
  
      has_names
  
  > 
  > test_check("msgr")
  Saving _problems/test-predicates-116.R
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 163 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-predicates.R:116:3'): is_readable returns TRUE for a readable file or directory ──
  Expected `is_readable(temp_file)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 163 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘babelgene’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven Rozen <steverozen@pm.me>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "dmorina@ub.edu",
                      comment = "Universitat de Barcelona"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut",
                      comment = "Universitat Autònoma de Barcelona"),
               person(given = "Mireia",
                      family = "Diaz",
                      role = "aut",
                      comment = "Institut Català d'Oncologia"))
as necessary.
Maintainer: ‘Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atsushi",
                    family = "Kawaguchi",
                    role = c("aut", "cre"),
                    email = "kawa_a24@yahoo.co.jp")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpViopRi/ltxdd354c9be75a/optparasearch.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Hasan BULUT <hasan.bulut@omu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hasan",
                    family = "BULUT",
                    role = c("aut", "cre"),
                    email = "hasan.bulut@omu.edu.tr")
as necessary.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpqCJ0tY/Rd2pdf3b564114c74f80/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Running examples in ‘msSPChelpR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calc_futime
> ### Title: Calculate follow-up time per case until end of follow-up
> ###   depending on pat_status - tidyverse version
> ### Aliases: calc_futime
> 
> ### ** Examples
> 
> #load sample data
> data("us_second_cancer")
> 
> #prep step - make wide data as this is the required format
> usdata_wide <- us_second_cancer %>%
+                     msSPChelpR::reshape_wide_tidyr(case_id_var = "fake_id", 
+                     time_id_var = "SEQ_NUM", timevar_max = 10)
>                     
> #prep step - calculate p_spc variable
> usdata_wide <- usdata_wide %>%
+                  dplyr::mutate(p_spc = dplyr::case_when(is.na(t_site_icd.2)   ~ "No SPC",
+                                                        !is.na(t_site_icd.2)   ~ "SPC developed",
+                                                        TRUE ~ NA_character_)) %>%
+                  dplyr::mutate(count_spc = dplyr::case_when(is.na(t_site_icd.2)   ~ 1,
+                                                               TRUE ~ 0))
>                                                               
> #prep step - create patient status variable
> usdata_wide <- usdata_wide %>%
+                   msSPChelpR::pat_status(., fu_end = "2017-12-31", dattype = "seer",
+                                          status_var = "p_status", life_var = "p_alive.1",
+                                          birthdat_var = "datebirth.1", lifedat_var = "datedeath.1")
Error in set_labels_helper(x = x[[vars[i]]], labels = labels[[i]], force.labels = force.labels,  : 
  Package 'haven' required for this function. Please install it.
Calls: %>% ... <Anonymous> -> %>% -> <Anonymous> -> set_labels_helper
Execution halted
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(msSPChelpR)
  > 
  > test_check("msSPChelpR")
  Saving _problems/test-pat_status-23.R
  Long dataset had too many cases per patient. Wide dataset is limited to  2  cases per id as defined in timevar_max option.
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-pat_status.R:5:3'): custom variable name for status_var works ──
  Error in `set_labels_helper(x = x[[vars[i]]], labels = labels[[i]], force.labels = force.labels, force.values = force.values, drop.na = drop.na, var.name = vars[i])`: Package 'haven' required for this function. Please install it.
  Backtrace:
      ▆
   1. ├─... %>% ... at test-pat_status.R:5:3
   2. ├─msSPChelpR::pat_status(...)
   3. │ └─... %>% ...
   4. └─sjlabelled::val_labels(...)
   5.   └─sjlabelled:::set_labels_helper(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Hong Chen <hongchen030@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘Detecting_and_Resolving_Infeasibility.Rmd’ using rmarkdown
--- finished re-building ‘Detecting_and_Resolving_Infeasibility.Rmd’

--- re-building ‘Formulation_for_Multiple_Objectives.Rmd’ using rmarkdown

Quitting from Formulation_for_Multiple_Objectives.Rmd:15-27 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggpubr'
---
Backtrace:
    ▆
 1. └─base::library(ggpubr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Formulation_for_Multiple_Objectives.Rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘Formulation_for_Multiple_Objectives.Rmd’

--- re-building ‘Getting_Started_with_mstATA.Rmd’ using rmarkdown
--- finished re-building ‘Getting_Started_with_mstATA.Rmd’

--- re-building ‘Stimulus_Based_Assessment_Conditional_Item_Selection.Rmd’ using rmarkdown
--- finished re-building ‘Stimulus_Based_Assessment_Conditional_Item_Selection.Rmd’

--- re-building ‘Three_ATA_Strategies.Rmd’ using rmarkdown

Quitting from Three_ATA_Strategies.Rmd:15-27 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggformula'
---
Backtrace:
    ▆
 1. └─base::library(ggformula)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Three_ATA_Strategies.Rmd' failed with diagnostics:
there is no package called 'ggformula'
--- failed re-building ‘Three_ATA_Strategies.Rmd’

SUMMARY: processing the following files failed:
  ‘Formulation_for_Multiple_Objectives.Rmd’ ‘Three_ATA_Strategies.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Kevin Michael Frick <kmfrick98@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kevin", "Michael"),
                    family = "Frick",
                    role = c("aut", "cre"),
                    email = "kmfrick98@gmail.com")
as necessary.
install log ‘’ does not exist
Maintainer: ‘Zhibing He <zhibingh@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhibing",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "zhibingh@asu.edu"),
               person(given = "Dan",
                      family = "Cheng",
                      role = "aut"))
as necessary.

The Description field contains
  Schwartzman (2015) <arXiv:1504.06384>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Elias Maciel <eliasmacielr@gmail.com>’

The Description field contains
  of Gustavo Sosa et al. (2016) <arXiv:1709.08730>, total correlation,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) multivar_joint_shannon_entropy.Rd:20: Lost braces
    20 |     {\code{table.variables}, \code{table.class}}.
       |     ^
checkRd: (-1) total_correlation.Rd:20: Lost braces
    20 |     {\code{table.variables}, \code{table.class}}.
       |     ^
Maintainer: ‘Josep A. Sanchez-Espigares <josep.a.sanchez@upc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Josep", "A."),
                      family = "Sanchez-Espigares",
                      role = c("aut", "cre"),
                      email = "josep.a.sanchez@upc.edu"),
               person(given = "Alberto",
                      family = "Lopez-Moreno",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpW9PcfX/file3c4d741909a2db', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpW9PcfX/file3c4d741909a2db/fanan.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘mthapower-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mthapower
> ### Title: Power calculations - mtDNA haplogroups
> ### Aliases: mthapower
> 
> ### ** Examples
> 
> # Example 1:
> pow <- mthapower(n.cases=203, p0=0.443, Nh=13, OR.cas.ctrl=2.33, sig.level=0.05)
> 
> # Example 2:
> # Create data frames
> pow.H150 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=1.5, sig.level=0.05)
> pow.H175 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=1.75, sig.level=0.05)
> pow.H200 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=2, sig.level=0.05)
> pow.H250 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=2.5, sig.level=0.05)
> 
> # Bind the three data frames:
> bindata <- rbind(pow.H150,pow.H175,pow.H200,pow.H250)
> # Adds column OR to binded data frame:
> bindata$OR <- rep(factor(c(1.50,1.75,2,2.5)),
+               times = c(nrow(pow.H150),
+                         nrow(pow.H175),
+                         nrow(pow.H200),
+                         nrow(pow.H250)))
> # Create plot:
> # install.packages("car")
> library(car)
Error in library(car) : there is no package called ‘car’
Execution halted
Maintainer: ‘Ye Tian <ye.t@columbia.edu>’

The Description field contains
  Y., Weng, H., & Feng, Y. (2022) <arXiv:2209.15224>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'meta', 'netmeta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpaUIWhb/file3e170439095f91': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpaUIWhb/file3e170439095f91': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'broom.mixed', 'glmmTMB'

Package suggested but not available for checking: ‘datamods’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ruey S. Tsay <ruey.tsay@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ruey", "S."),
                      family = "Tsay",
                      role = c("aut", "cre"),
                      email = "ruey.tsay@chicagobooth.edu"),
               person(given = "David",
                      family = "Wood",
                      role = "aut"),
               person(given = "Jon",
                      family = "Lachmann",
                      role = "ctb"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘mtsta_redlist.Rmd’ using rmarkdown

Quitting from mtsta_redlist.Rmd:23-39 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'janitor'
---
Backtrace:
    ▆
 1. ├─knitr::kable(...)
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mtsta_redlist.Rmd' failed with diagnostics:
there is no package called 'janitor'
--- failed re-building ‘mtsta_redlist.Rmd’

SUMMARY: processing the following file failed:
  ‘mtsta_redlist.Rmd’

Error: Vignette re-building failed.
Execution halted
install log ‘’ does not exist
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oliver",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "MuckRock",
                      family = "Project",
                      role = "cph"))
as necessary.

The Description field contains
  the 'MuckRock' (https://www.muckrock.com/) project under the United
Please enclose URLs in angle brackets (<...>).
install log ‘’ does not exist
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggraph', 'tidygraph', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘mulgar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: anomalies
> ### Title: Data sets with anomalies
> ### Aliases: anomalies anomaly1 anomaly2 anomaly3 anomaly4 anomaly5
> ### Keywords: datasets
> 
> ### ** Examples
> 
> require(GGally)
Loading required package: GGally
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘GGally’
> data(anomaly1)
> data(anomaly2)
> ggscatmat(anomaly1)
Error in ggscatmat(anomaly1) : could not find function "ggscatmat"
Execution halted
Maintainer: ‘Ivan Tomic <info@ivantomic.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘intersection.Rd’:
    \keyword{intersect,}
  File ‘mulset.Rd’:
    \keyword{intersection,}
    \keyword{mulset,}
Packages required but not available: 'Hmisc', 'car', 'dunn.test', 'dae'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Serguei Sokol <sokol@insa-toulouse.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Serguei",
                    family = "Sokol",
                    role = c("aut", "cre"),
                    email = "sokol@insa-toulouse.fr")
as necessary.
Maintainer: ‘Mario Hasler <hasler@email.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mario",
                    family = "Hasler",
                    role = c("aut", "cre"),
                    email = "hasler@email.uni-kiel.de")
as necessary.
checkRd: (-1) MultEq-package.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MultEq-package.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MultEq-package.Rd:30: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Robin Ristl <robin.ristl@meduniwien.ac.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michael Eichenberger <mike.eichenberger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Eichenberger",
                      role = c("aut", "cre"),
                      email = "mike.eichenberger@gmail.com"),
               person(given = "Carlo",
                      family = "Rosa",
                      role = "aut"))
as necessary.
install log ‘’ does not exist
install log ‘’ does not exist
Maintainer: ‘Ana Belen Nieto Librero <ananieto@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Belen", "Nieto"),
                      family = "Librero",
                      role = c("aut", "cre"),
                      email = "ananieto@usal.es"),
               person(given = "Nora",
                      family = "Baccala",
                      role = "aut",
                      email = "norabaccala@gmail.com"),
               person(given = c("Purificacion", "Vicente"),
                      family = "Galindo",
                      role = "aut",
                      email = "purivg@usal.es"),
               person(given = c("Purificacion", "Galindo"),
                      family = "Villardon",
                      role = "aut",
                      email = "pgalindo@usal.es"))
as necessary.
Packages required but not available: 'car', 'HDANOVA', 'mixlm'

Packages suggested but not available for checking: 'FactoMineR', 'RGCCA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nils Norman Schiborr <nils-norman.schiborr@uni-bamberg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nour-al-dain Marzouka <Nour-al-dain.Marzouka@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nour-al-dain",
                    family = "Marzouka",
                    role = c("aut", "cre"),
                    email = "nour-al-dain.marzouka@med.lu.se")
as necessary.
Packages required but not available: 'dunn.test', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) dbivCMP.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{bivprob}{Bivariate probabilities, {p00, p01, p10, p11}.}
       |                                         ^
Maintainer: ‘R. Salmeron <romansg@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Salmeron",
                      role = c("aut", "cre"),
                      email = "romansg@ugr.es"),
               person(given = "C.",
                      family = "Garcia",
                      role = "aut"),
               person(given = "J.",
                      family = "Garcia",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp4qpqgj/ltx3cb0215dfd4248/PROPs.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Curran",
                      role = c("aut", "cre"),
                      email = "j.curran@auckland.ac.nz"),
               person(given = "Aaron",
                      family = "Williams",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Kelleher",
                      role = "aut"),
               person(given = "Dave",
                      family = "Barber",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Error(s) in re-building vignettes:
  ...
--- re-building ‘multidplyr.Rmd’ using rmarkdown

Quitting from multidplyr.Rmd:99-111 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. ├─base::system.time(flights2 <- flights %>% partition(cluster))
  2. ├─flights %>% partition(cluster)
  3. └─multidplyr::partition(., cluster)
  4.   └─multidplyr::cluster_assign_each(cluster, `:=`(!!name, shards))
  5.     └─multidplyr::cluster_assign(...)
  6.       └─multidplyr::cluster_send(...)
  7.         └─multidplyr::cluster_call(cluster, !!code)
  8.           └─base::lapply(...)
  9.             └─multidplyr (local) FUN(X[[i]], ...)
 10.               └─x$call(f, list(code = code, to_rm = to_rm))
 11.                 └─callr:::rs_call(self, private, func, args, package)
 12.                   └─callr:::save_function_to_temp(private$options)
 13.                     ├─base::suppressWarnings(...)
 14.                     │ └─base::withCallingHandlers(...)
 15.                     └─base::saveRDS(...)
 16.                       └─base::file(file, mode)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'multidplyr.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘multidplyr.Rmd’

SUMMARY: processing the following file failed:
  ‘multidplyr.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Volkmann <alexandervolkmann8@gmail.com>’

The Description field contains
  (multiFAMM), see Volkmann et al. (2021, <arXiv:2103.06606>). It builds
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘sparseFLMM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  data (Munko et al., 2023, <arXiv:2306.15259>). These procedures enable
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘S. Gorsky <sgorsky@umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "S.",
                      family = "Gorsky",
                      role = c("aut", "cre"),
                      email = "sgorsky@umass.edu"),
               person(given = "L.",
                      family = "Ma",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘MultiFIT.Rmd’ using rmarkdown

Quitting from MultiFIT.Rmd:102-107 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qgraph'
---
Backtrace:
    ▆
 1. └─base::library(qgraph)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MultiFIT.Rmd' failed with diagnostics:
there is no package called 'qgraph'
--- failed re-building ‘MultiFIT.Rmd’

SUMMARY: processing the following file failed:
  ‘MultiFIT.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jarrett Byrnes <jarrett.byrnes@umb.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Panos Rontogiannis <p.g.ronto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panos",
                    family = "Rontogiannis",
                    role = c("aut", "cre"),
                    email = "p.g.ronto@gmail.com")
as necessary.
Maintainer: ‘Marina Gomtsyan <marina.gomtsyan@agroparistech.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marina",
                    family = "Gomtsyan",
                    role = c("aut", "cre"),
                    email = "marina.gomtsyan@agroparistech.fr")
as necessary.

The Description field contains
  (2022), <arXiv:2208.14721>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mlgraph.Rd’
Packages required but not available: 'qgraph', 'mgm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘"Markus Loecher" <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = c("Berlin", "School", "of"),
                      family = "Economics",
                      role = "aut"),
               person(family = "Law\"",
                      role = "aut",
                      email = "markus.loecher@gmail.com",
                      comment = "BSEL"))
as necessary.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'brms', 'shinystan', 'plotly'

Package suggested but not available for checking: ‘cmdstanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'brms', 'glmmTMB'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘parsnip’

Package suggested but not available for checking: ‘tidymodels’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'JWileymisc', 'ggpubr', 'brms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘klaR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘multilinguer-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
No examples, no tests, no vignettes
Packages required but not available: 'brms', 'tidygraph'

Packages suggested but not available for checking: 'ggraph', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpbnRK5C/Rf3d152e499978b2': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Jose Ameijeiras-Alonso <jose.ameijeiras@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jose",
                      family = "Ameijeiras-Alonso",
                      role = c("aut", "cre"),
                      email = "jose.ameijeiras@usc.es"),
               person(given = c("Rosa", "M."),
                      family = "Crujeiras",
                      role = "aut"),
               person(given = "Alberto",
                      family = "Rodríguez-Casal",
                      role = "aut"),
               person(given = c("The", "R", "Core", "Team"),
                      family = "1996-2012",
                      role = c("ctb", "cph"),
                      comment = "C function 'BinDist2' obtained from package 'stats'"),
               person(given = c("The", "R", "Foundation"),
                      family = "2005",
                      role = c("ctb", "cph"),
                      comment = "C function 'BinDist2' obtained from package 'stats'"))
as necessary.
Packages required but not available: 'tidyverse', 'MBESS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

Packages suggested but not available for checking: 'tidygraph', 'flexsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpedkhYx/ltx8366e3e0e9/strategy_marginal.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpgpusPX/file3cacca383ac6f6': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpgpusPX/file3cacca383ac6f6': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘matchMulti’

Package suggested but not available for checking: ‘rrelaxiv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicolas Froelich <nicfroe@posteo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolas",
                    family = "Froelich",
                    role = c("aut", "cre"),
                    email = "nicfroe@posteo.de")
as necessary.
Maintainer: ‘Pedro Araujo <pharaujo1094@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pedro", "Araujo", "Gustavo", "Lacerda", "<gustavolacerdas@gmail.com>", "Peter", "C.B.", "Phillips", "<peter.phillips@yale.edu>", "Shu-Ping", "Shi"),
                      family = "<shuping.shi@mq.edu.au>",
                      role = "aut",
                      email = "shuping.shi@mq.edu.au"),
               person(given = "Pedro",
                      family = "Araujo",
                      role = "cre",
                      email = "pharaujo1094@gmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘sadf.Rd’:
    \keyword{AugmentedDickey-FullerTest,}
Maintainer: ‘Yuqi Tian <yuqitian35@gmail.com>’

The Description field contains
  with Semiparametric Cumulative Probability Models". <arXiv:2207.02815>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking: 'pec', 'randomForestSRC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aurobindh Kalathil Puthanpura <kalat2@pdx.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aurobindh", "Kalathil"),
                    family = "Puthanpura",
                    role = c("aut", "cre"),
                    email = "kalat2@pdx.edu")
as necessary.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Keyel <skeyel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Keyel",
                    role = c("aut", "cre"),
                    email = "skeyel@gmail.com")
as necessary.
Maintainer: ‘Mark A. van de Wiel <mark.vdwiel@amsterdamumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mark", "A."),
                    family = "van de Wiel",
                    role = c("aut", "cre"),
                    email = "mark.vdwiel@amsterdamumc.nl")
as necessary.

The Description field contains
  be specified. See Van de Wiel et al. (2021), <arXiv:2005.09301>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Shixiao Zhang <praetere@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shixiao",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "praetere@gmail.com"),
               person(given = "Peisong",
                      family = "Han",
                      role = "aut"))
as necessary.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpAxHWo9/Rd2pdf3c6b2e441565f6/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Allison Meisner <allison.meisner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allison",
                    family = "Meisner",
                    role = c("aut", "cre"),
                    email = "allison.meisner@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hervé Monod <herve.monod@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Caroline",
                      family = "Bidot",
                      role = "aut",
                      email = "caroline.bidot@inra.fr"),
               person(given = "Matieyendou",
                      family = "Lamboni",
                      role = "aut",
                      email = "matieyendou.lamboni@gmail.com"),
               person(given = "Hervé",
                      family = "Monod",
                      role = c("aut", "cre"),
                      email = "herve.monod@inra.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
checkRd: (-1) biomasse.Rd:30: Lost braces
    30 | Makowski, D., Jeuffroy, M.-H., Gu\'{e}rif, M., 2004 Bayesian methods for
       |                                    ^
checkRd: (-1) climat.Rd:20: Lost braces
    20 | Makowski, D., Jeuffroy, M.-H., Gu\'{e}rif, M., 2004 Bayesian methods for
       |                                    ^
checkRd: (-1) simulmodel.Rd:15: Lost braces
    15 |   \item{\dots}{... }{possible fixed parameters of the R-function}
       |                     ^
Package required but not available: ‘logistf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xu Qin <xuqin@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@pitt.edu"),
               person(given = "Guanglei",
                      family = "Hong",
                      role = "aut"),
               person(given = "Jonah",
                      family = "Deutsch",
                      role = "aut"),
               person(given = "Edward",
                      family = "Bein",
                      role = "aut"))
as necessary.
Maintainer: ‘Cinzia Franceschini <cinziafranceschini@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cinzia",
                      family = "Franceschini",
                      role = c("aut", "cre"),
                      email = "cinziafranceschini@msn.com"),
               person(given = "Nicola",
                      family = "Loperfido",
                      role = "aut"))
as necessary.
Maintainer: ‘Sarra Chair <sarra.chair@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sarra",
                      family = "Chair",
                      role = c("aut", "cre"),
                      email = "sarra.chair@gmail.com"),
               person(given = "Malika",
                      family = "Charrad",
                      role = "aut"))
as necessary.
Maintainer: ‘Adam Clark <adam.tclark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "adam.tclark@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Karim Rahim <karim.rahim@queensu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karim",
                      family = "Rahim",
                      role = c("aut", "cre"),
                      email = "karim.rahim@queensu.ca"),
               person(given = c("Wesley", "S."),
                      family = "Burr",
                      role = "aut",
                      email = "wesleyburr@trentu.ca"))
as necessary.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'flextable', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'factoextra', 'candisc', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Raziur Rahman <razeeebuet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Raziur",
                    family = "Rahman",
                    role = c("aut", "cre"),
                    email = "razeeebuet@gmail.com")
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/RobinHankin/multivator
which should likely be
  https://github.com/RobinHankin/multivator/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘accessors.R’ ‘export_json.R’ ‘extract.R’
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpsGJStr/ltx195b94bc6b64d/multiview.cox.fit.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Irene Gannaz <irene.gannaz@grenoble-inp.fr>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpZN1j2Q/Rf3d251323dc2a69': No space left on device
cannot open the connection
cannot open the connection
problems found in ‘fnnls.Rd’, ‘multiway-package.Rd’
Maintainer: ‘Eric F. Lock <elock@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eric", "F."),
                    family = "Lock",
                    role = c("aut", "cre"),
                    email = "elock@umn.edu")
as necessary.
Maintainer: ‘Nathaniel Graham <npgraham1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nathaniel",
                      family = "Graham",
                      role = c("aut", "cre"),
                      email = "npgraham1@gmail.com"),
               person(given = "Mahmood",
                      family = "Arai",
                      role = "aut"),
               person(given = "Björn",
                      family = "Hagströmer",
                      role = "aut"))
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpuRKdqn/file3e1f8078f19e5', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpuRKdqn/file3e1f8078f19e5/contourmvd.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Eric Nantz <eric.nantz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Dmitrienko",
                      role = "aut"),
               person(given = "Eric",
                      family = "Nantz",
                      role = c("aut", "cre"),
                      email = "eric.nantz@gmail.com"),
               person(given = "Gautier",
                      family = "Paux",
                      role = "aut"),
               person(given = c("with", "contributions", "by", "Thomas"),
                      family = "Brechenmacher",
                      role = "aut"))
as necessary.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Elff <martin@elff.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Elff",
                    role = c("aut", "cre"),
                    email = "martin@elff.eu")
as necessary.
checkRd: (-1) metricUnfolding.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:71-72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:73-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:75-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:80-86: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Charlotte Wickham <cwickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charlotte",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "cwickham@gmail.com")
as necessary.
Maintainer: ‘Ryan T. Moore <rtm@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "T."),
                      family = "Moore",
                      role = c("aut", "cre"),
                      email = "rtm@american.edu"),
               person(given = "Andrew",
                      family = "Reeves",
                      role = "aut",
                      email = "reeves@wustl.edu"))
as necessary.
Maintainer: ‘Fabian Krueger <Fabian.Krueger83@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Jordan",
                      role = "aut"),
               person(given = "Fabian",
                      family = "Krueger",
                      role = c("aut", "cre"),
                      email = "fabian.krueger83@gmail.com"))
as necessary.
Maintainer: ‘Aljaz Jelenko <aljaz.jelenko@amis.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aljaz",
                    family = "Jelenko",
                    role = c("aut", "cre"),
                    email = "aljaz.jelenko@amis.net")
as necessary.
Maintainer: ‘Alessandro Santuz <alessandro.santuz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Henning Prömpers <henning@proempers.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Henning",
                      family = "Prömpers",
                      role = c("aut", "cre"),
                      email = "henning@proempers.net"),
               person(given = "André",
                      family = "Guimarães",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/alsguimaraes/MUS
which should likely be
  https://github.com/alsguimaraes/MUS/issues
instead.
Maintainer: ‘Kornelius Rohmeyer <rohmeyer@small-projects.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("MuToss", "Coding"),
                      family = "Team",
                      role = "aut",
                      comment = "Berlin 2010"),
               person(given = "Gilles",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thorsten",
                      family = "Dickhaus",
                      role = "aut"),
               person(given = "Niklas",
                      family = "Hack",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Kornelius",
                      family = "Rohmeyer",
                      role = c("aut", "cre"),
                      email = "rohmeyer@small-projects.de"),
               person(given = "Jonathan",
                      family = "Rosenblatt",
                      role = "aut"),
               person(given = "Marsel",
                      family = "Scheer",
                      role = "aut"),
               person(given = "Wiebke",
                      family = "Werft",
                      role = "aut"))
as necessary.
Checking relative paths failed with message:
  inferior call failed
cannot open the connection
problem found in ‘twosamp.marginal.Rd’
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Damiano",
                      family = "Fantini",
                      role = c("aut", "cre"),
                      email = "damiano.fantini@gmail.com"),
               person(given = "Vania",
                      family = "Vidimar",
                      role = "aut"),
               person(given = c("Joshua", "J"),
                      family = "Meeks",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘get_sarted_with_mutSignatures.Rmd’ using rmarkdown

Quitting from get_sarted_with_mutSignatures.Rmd:305-315 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `grid.newpage()`:
! could not open file '/tmp/Rtmpi6nKUk/file3fac25542db266'
---
Backtrace:
    ▆
 1. └─gridExtra::grid.arrange(hm1, hm2, ncol = 2)
 2.   └─grid::grid.newpage()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'get_sarted_with_mutSignatures.Rmd' failed with diagnostics:
could not open file '/tmp/Rtmpi6nKUk/file3fac25542db266'
--- failed re-building ‘get_sarted_with_mutSignatures.Rmd’

SUMMARY: processing the following file failed:
  ‘get_sarted_with_mutSignatures.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpqVPHec/file3fb98b7a35249d': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpqVPHec/file3fb98b7a35249d': No such file or directory
Error in file(con, "r") : cannot open the connection
cannot open the connection
problem found in ‘Mutator.Rd’
Maintainer: ‘Mohit Dayal <mohitdayal2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mohit",
                    family = "Dayal",
                    role = c("aut", "cre"),
                    email = "mohitdayal2000@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Warton <David.Warton@unsw.edu.au>’

Found the following (possibly) invalid URLs:
  URL: 
    From: README.md
    Message: Empty URL
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘Offsets.Rmd’ using rmarkdown

Quitting from Offsets.Rmd:47-55 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ecostats'
---
Backtrace:
    ▆
 1. └─base::library(ecostats)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Offsets.Rmd' failed with diagnostics:
there is no package called 'ecostats'
--- failed re-building ‘Offsets.Rmd’

--- re-building ‘mvabund.Rmd’ using rmarkdown

Quitting from mvabund.Rmd:26-33 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'skimr'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mvabund.Rmd' failed with diagnostics:
there is no package called 'skimr'
--- failed re-building ‘mvabund.Rmd’

SUMMARY: processing the following files failed:
  ‘Offsets.Rmd’ ‘mvabund.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp5jUWWW/ltxf9113bcd30d3/boxplot.mvabund.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Mohammed Sedki <mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmphZMlSp/Rf3faba021e92ff1': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpfuTZni/file3fb7b66a14d4b8/noice.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Denis Larocque <denis.larocque@hec.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denis",
                    family = "Larocque",
                    role = c("aut", "cre"),
                    email = "denis.larocque@hec.ca")
as necessary.
Maintainer: ‘Nelson Lee Afanador <nelson.afanador@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nelson", "Lee"),
                      family = "Afanador",
                      role = c("aut", "cre"),
                      email = "nelson.afanador@gmail.com"),
               person(given = "Thanh",
                      family = "Tran",
                      role = "aut"),
               person(given = "Lionel",
                      family = "Blanchet",
                      role = "aut"),
               person(given = "Richard",
                      family = "Baumgartner",
                      role = "aut"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘DFA.R’ ‘mvDFA.R’ ‘simulate_Lorenz_noise.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘mvDFA.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmpwf01x7/Rf3fb7cc55a0ef4b': No space left on device

Quitting from mvDFA.Rmd:68-77 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from mvDFA.Rmd:68-77 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mvDFA.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘mvDFA.Rmd’

SUMMARY: processing the following file failed:
  ‘mvDFA.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Michael Jongho Moon <michael.moon@utoronto.ca>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fdapace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

Package suggested but not available for checking: ‘cmdstanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Justin Williams <williazo@ucla.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The Description field contains
  Williams, J.R, and Crespi, C.M. (2020) <arxiv:2008.13767>. The methods
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'car', 'heplots'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘mvMAPIT.Rmd’ using rmarkdown
--- finished re-building ‘mvMAPIT.Rmd’

--- re-building ‘study-compare-p-value-combine-methods.Rmd’ using rmarkdown

Quitting from study-compare-p-value-combine-methods.Rmd:21-26 [load_dependencies]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'GGally'
---
Backtrace:
    ▆
 1. └─base::library(GGally)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'study-compare-p-value-combine-methods.Rmd' failed with diagnostics:
there is no package called 'GGally'
--- failed re-building ‘study-compare-p-value-combine-methods.Rmd’

--- re-building ‘study-phillips-bnabs.Rmd’ using rmarkdown
--- finished re-building ‘study-phillips-bnabs.Rmd’

--- re-building ‘study-wtccc-mice.Rmd’ using rmarkdown
--- finished re-building ‘study-wtccc-mice.Rmd’

--- re-building ‘tutorial-docker-mvmapit.Rmd’ using rmarkdown
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘tutorial-docker-mvmapit.Rmd’

--- re-building ‘tutorial-lt-mapit.Rmd’ using rmarkdown
--- finished re-building ‘tutorial-lt-mapit.Rmd’

--- re-building ‘tutorial-simulations.Rmd’ using rmarkdown
--- finished re-building ‘tutorial-simulations.Rmd’

SUMMARY: processing the following file failed:
  ‘study-compare-p-value-combine-methods.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmp4gXNko/Rd2pdf3d99bf7c360a7/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘John P. Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "P."),
                    family = "Nolan",
                    role = c("aut", "cre"),
                    email = "jpnolan@american.edu")
as necessary.
Maintainer: ‘Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antonio",
                    family = "Gasparrini",
                    role = c("aut", "cre"),
                    email = "antonio.gasparrini@lshtm.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arthur",
                    family = "Allignol",
                    role = c("aut", "cre"),
                    email = "arthur.allignol@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: /https://cran.r-project.org/web/packages/mvna/index.html
    From: README.md
Maintainer: ‘ZHANG Chen <447974102@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "ZHANG",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "447974102@qq.com")
as necessary.
Maintainer: ‘Frank Technow <mvnggrad@fastmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frank",
                    family = "Technow",
                    role = c("aut", "cre"),
                    email = "mvnggrad@fastmail.com")
as necessary.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hesen Li <li.hesen.21@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hesen",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "li.hesen.21@gmail.com")
as necessary.
Packages required but not available: 'meta', 'netmeta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'plotly', 'mice'

Package suggested but not available for checking: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Running examples in ‘mvProbit-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mvProbit
> ### Title: Estimation of Multivariate Probit Models
> ### Aliases: mvProbit print.mvProbit
> ### Keywords: models regression
> 
> ### ** Examples
> 
> ## generate a simulated data set
> set.seed( 123 )
> # number of observations
> nObs <- 50
> 
> # generate explanatory variables
> xMat <- cbind( 
+    const = rep( 1, nObs ),
+    x1 = as.numeric( rnorm( nObs ) > 0 ),
+    x2 = rnorm( nObs ) )
> 
> # model coefficients
> beta <- cbind( c(  0.8,  1.2, -0.8 ),
+                c( -0.6,  1.0, -1.6 ),
+                c(  0.5, -0.6,  1.2 ) )
> 
> # covariance matrix of error terms
> library( miscTools )
> sigma <- symMatrix( c( 1, 0.2, 0.4, 1, -0.1, 1 ) )
> 
> # generate dependent variables
> yMatLin <- xMat %*% beta 
> yMat <- ( yMatLin + rmvnorm( nObs, sigma = sigma ) ) > 0
> colnames( yMat ) <- paste( "y", 1:3, sep = "" )
> 
> # estimation (BHHH optimizer and GHK algorithm)
> estResult <- mvProbit( cbind( y1, y2, y3 ) ~ x1 + x2,
+    data = as.data.frame( cbind( xMat, yMat ) ), iterlim = 1, nGHK = 50 )
Warning in file(file, if (append) "a" else "w") :
  cannot open file '/tmp/RtmpiF2nMN/file3f6c1772303f42': No space left on device
Error in file(file, if (append) "a" else "w") : 
  cannot open the connection
Calls: mvProbit ... mvProbitLogLikInternal -> pmvnormWrap -> sink -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpxqTkAc/ltx3fbd0d332147b9/summary.mvProbitMargEff.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Douglas Whitaker <douglas.whitaker@msvu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Douglas",
                    family = "Whitaker",
                    role = c("aut", "cre"),
                    email = "douglas.whitaker@msvu.ca")
as necessary.
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URIs:
  URI: jean-eudes.dazard@case.edu
    From: README.md
  URI: huaxu77@gmail.com
    From: README.md
  URI: ahs4@case.edu
    From: README.md
Maintainer: ‘Tommy Jones <jones.thos.w@gmail.com>’

The Description field contains
  Jones (2019) <arXiv:1911.11061>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Elizabeth Gonzalez Estrada <egonzalez@colpos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elizabeth",
                      family = "Gonzalez-Estrada",
                      role = "aut"),
               person(given = c("Jose", "A."),
                      family = "Villasenor-Alva",
                      role = "aut"),
               person(given = c("Elizabeth", "Gonzalez"),
                      family = "Estrada",
                      role = "cre",
                      email = "egonzalez@colpos.mx"))
as necessary.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘mvs.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'mice''

Quitting from mvs.Rmd:342-344 [unnamed-chunk-27]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `StaPLR()`:
! Package `mice` is required, but not installed.
---
Backtrace:
    ▆
 1. └─mvs::MVS(x = X, y = y, views = views, na.action = "mice")
 2.   ├─base::do.call(learn, arg_list)
 3.   └─mvs (local) `<fn>`(...)
 4.     └─mvs::StaPLR(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mvs.Rmd' failed with diagnostics:
Package `mice` is required, but not installed.
--- failed re-building ‘mvs.Rmd’

SUMMARY: processing the following file failed:
  ‘mvs.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Antonio Parisi <antonio.parisi@uniroma2.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Parisi",
                      role = c("aut", "cre"),
                      email = "antonio.parisi@uniroma2.it"),
               person(given = "Brunero",
                      family = "Liseo",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "ctb"),
               person(given = "Romain",
                      family = "Francois",
                      role = "ctb"))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp247WaK/Rf3fdc6871596d9f': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
cannot open the connection
problem found in ‘bivPlot.Rd’
Maintainer: ‘Han Chen <Han.Chen.2@uth.tmc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Han",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "han.chen.2@uth.tmc.edu")
as necessary.
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Running massageExamples to create ‘mx.api-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpV5arpi/file3fb8c698262bc/mx_read_receipt.R': No space left on device
Execution halted
 NONE
Packages required but not available: 'refund', 'SpatEntropy'

Packages suggested but not available for checking:
  'tidyverse', 'ggpubr', 'spatialTIME', 'refund.shiny', 'Seurat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("B", "N"),
                    family = "Mandal",
                    role = c("aut", "cre"),
                    email = "mandal.stat@gmail.com")
as necessary.
Encountered the following conversion/validation errors:
cannot open the connection
Note: skipping ‘mmod_tutorial.Rmd’ due to unavailable dependencies:
  'tidyverse'
Packages required but not available: 'fda', 'caret'

Package suggested but not available for checking: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘get_individual_algebra_results.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Latent-Growth-Curve.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpxDswID/Rfa8907043e632': No space left on device

Quitting from Latent-Growth-Curve.Rmd:99-113 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Latent-Growth-Curve.Rmd:99-113 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Latent-Growth-Curve.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Latent-Growth-Curve.Rmd’

--- re-building ‘Moderated-Nonlinear-Factor-Analysis.Rmd’ using rmarkdown
--- finished re-building ‘Moderated-Nonlinear-Factor-Analysis.Rmd’

--- re-building ‘Syntax.Rmd’ using rmarkdown
--- finished re-building ‘Syntax.Rmd’

--- re-building ‘create_parameter_table.Rmd’ using rmarkdown
--- finished re-building ‘create_parameter_table.Rmd’

SUMMARY: processing the following file failed:
  ‘Latent-Growth-Curve.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘rTubeDB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘S. Ramachandran<ramu@igib.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Deepika",
                      family = "Kulshreshtha",
                      role = "aut"),
               person(given = "Rupanjali",
                      family = "Chaudhuri",
                      role = "aut"),
               person(given = "Surabhi",
                      family = "Seth",
                      role = "aut"),
               person(given = "S.",
                      family = "Ramachandran",
                      role = c("aut", "cre"),
                      email = "ramu@igib.in"))
as necessary.
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpszLAuS/Rd2pdf3f9c42318ac217/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
sh: 1: cannot create /tmp/RtmpONEKJX/xshell3fe1b727121b18: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpONEKJX/xshell3fe1b727121b18': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Fu-Chang Hu <fuchang.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("International-Harvard", "Statistical", "Consulting"),
                      family = "Company",
                      role = "aut",
                      email = "nhsc2010@hotmail.com"),
               person(given = "Fu-Chang",
                      family = "Hu",
                      role = "cre",
                      email = "fuchang.hu@gmail.com"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gregory Jefferis <jefferis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephane",
                      family = "Mangenat",
                      role = "aut",
                      comment = "for 'libnabo'"),
               person(given = "Gregory",
                      family = "Jefferis",
                      role = c("aut", "cre"),
                      email = "jefferis@gmail.com"))
as necessary.
Maintainer: ‘Yaofang Hu <yaofangh@smu.edu>’

The Description field contains
  Wang (2023) <arXiv:2306.15616>. In addition to NAC, this package
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘survminer’

Packages suggested but not available for checking: 'car', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sun-joo Lee <sjlee@air.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sun-joo",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "sjlee@air.org"),
               person(given = "Eric",
                      family = "Buehler",
                      role = "aut"),
               person(given = "Paul",
                      family = "Bailey",
                      role = "ctb"))
as necessary.
Packages required but not available: 'FactoMineR', 'SensoMineR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Qingliang Fan <michaelqfan@xmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingliang",
                      family = "Fan",
                      role = c("aut", "cre"),
                      email = "michaelqfan@xmu.edu.cn"),
               person(given = "KongYu",
                      family = "He",
                      role = "aut"),
               person(given = "Wei",
                      family = "Zhong",
                      role = "aut"))
as necessary.
checkRd: (-1) DSIVdata.Rd:15-23: Lost braces
    15 | for(i in 1:50){
       |               ^
checkRd: (-1) DSIVdata.Rd:17-21: Lost braces
    17 |   for(j in 1:50){
       |                 ^
checkRd: (-1) DSIVdata.Rd:31-39: Lost braces
    31 | for(i in 1:20){
       |               ^
checkRd: (-1) DSIVdata.Rd:33-37: Lost braces
    33 |   for(j in 1:20){
       |                 ^
checkRd: (-1) DSLIVEdata.Rd:10-18: Lost braces
    10 | for(i in 1:200){
       |                ^
checkRd: (-1) DSLIVEdata.Rd:12-16: Lost braces
    12 |   for(j in 1:200){
       |                  ^
checkRd: (-1) DSLIVEdata.Rd:26-34: Lost braces
    26 | for(i in 1:20){
       |               ^
checkRd: (-1) DSLIVEdata.Rd:28-32: Lost braces
    28 |   for(j in 1:20){
       |                 ^
checkRd: (-1) DSLIVEdata.Rd:50-54: Lost braces
    50 | for(kk in 1:length(p)){
       |                       ^
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
checkRd: (-1) drop_name_crossref.Rd:49: Lost braces; missing escapes or markup?
    49 | Takes one or several dois and extracts information from Crossref, then processes them into visual citations with \code{\link{drop_name}}. Requires {rcrossref} > v1.1, see README for further details.
       |                                                                                                                                                    ^
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp2SDOUj/Rf3feb598462bc0': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Packages required but not available: 'autothresholdr', 'detrendr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpG49FaX/Rf3fecdd9f91834': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
Maintainer: ‘Taha Zaghdoudi <zedtaha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Taha",
                    family = "Zaghdoudi",
                    role = c("aut", "cre"),
                    email = "zedtaha@gmail.com")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eduardo Flores <eduardo@enelmargen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eduardo",
                    family = "Flores",
                    role = c("aut", "cre"),
                    email = "eduardo@enelmargen.org")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘a-race-winning-strategy.Rmd’ using rmarkdown

Quitting from a-race-winning-strategy.Rmd:28-45 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─conflicted (local) library(tidyverse)
 4.   └─base::library(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'a-race-winning-strategy.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘a-race-winning-strategy.Rmd’

--- re-building ‘migrating-to-nxs.Rmd’ using rmarkdown
--- finished re-building ‘migrating-to-nxs.Rmd’

SUMMARY: processing the following file failed:
  ‘a-race-winning-strategy.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Gregory Jefferis <jefferis@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpU73rIt/Rf3fe72c17abe14': No space left on device
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘gurobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Guo Yu <gy63@cornell.edu>’

The Description field contains
  high-dimensional linear models of Yu, Bien (2017) <arXiv:1712.02412>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kosei Abe <mail@recyclebin.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kosei",
                    family = "Abe",
                    role = c("aut", "cre"),
                    email = "mail@recyclebin.jp")
as necessary.
Packages required but not available: 'plotly', 'simts'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘activate.Rd’
Maintainer: ‘Hiroto Katsumata <hrt.katsumata@gmail.com>’

The Description field contains
  <arXiv:2005.10998>, which improves the inverse probability weighting by
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Richard Wen <rrwen.dev@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Malika Charrad <malika.charrad.1@ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Malika",
                      family = "Charrad",
                      role = c("aut", "cre"),
                      email = "malika.charrad.1@ulaval.ca"),
               person(given = "Nadia",
                      family = "Ghazzali",
                      role = "aut"),
               person(given = "Veronique",
                      family = "Boiteau",
                      role = "aut"),
               person(given = "Azam",
                      family = "Niknafs",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NbClust.Rd:50: Lost braces; missing escapes or markup?
    50 |       \item \bold{Average} : The distance \eqn{D_{ij}}{D_ij} between two clusters \eqn{C_{i}}{C_i} and \eqn{C_{j}}{C_j} is the mean of the distances between the pair of points {x} and {y}, where \eqn{x \in C_{i}, y \in C_{j}}{x in C_i, y in C_j}.
       |                                                                                                                                                                                 ^
checkRd: (-1) NbClust.Rd:50: Lost braces; missing escapes or markup?
    50 |       \item \bold{Average} : The distance \eqn{D_{ij}}{D_ij} between two clusters \eqn{C_{i}}{C_i} and \eqn{C_{j}}{C_j} is the mean of the distances between the pair of points {x} and {y}, where \eqn{x \in C_{i}, y \in C_{j}}{x in C_i, y in C_j}.
       |                                                                                                                                                                                         ^
Maintainer: ‘Philipp Angerer <philipp.angerer@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philipp",
                    family = "Angerer",
                    role = c("aut", "cre"),
                    email = "philipp.angerer@helmholtz-muenchen.de")
as necessary.
checkRd: (-1) nbconvert.Rd:49: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) nbconvert.Rd:50: Lost braces in \enumerate; meant \describe ?
Packages required but not available: 'sjmisc', 'haven'

Package suggested but not available for checking: ‘NBDCtoolsData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Feiming Chen <feimingchen@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feiming",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feimingchen@yahoo.com")
as necessary.
Package required but not available: ‘nbpMatching’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yanming Di <diy@stat.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanming",
                      family = "Di",
                      role = c("aut", "cre"),
                      email = "diy@stat.oregonstate.edu"),
               person(given = c("Daniel", "W"),
                      family = "Schafer",
                      role = "aut",
                      email = "schafer@stat.oregonstate.edu"),
               person(given = c("with", "contributions", "from", "Jason", "S"),
                      family = "Cumbie",
                      role = "aut",
                      email = "cumbiej@onid.orst.edu"),
               person(given = c("Jeff", "H"),
                      family = "Chang.",
                      role = "aut",
                      email = "changj@cgrb.oregonstate.edu"))
as necessary.
Maintainer: ‘Zeus Gracia-Tabuenca <zgtabuenca@comunidad.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marina Gomtsyan <mgomtsian@gmail.com>’

The Description field contains
  <arXiv:2307.00929>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jon Eastman <jonathan.eastman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Eastman",
                    role = c("aut", "cre"),
                    email = "jonathan.eastman@gmail.com")
as necessary.
install log ‘’ does not exist
Package required but not available: ‘areal’

Package suggested but not available for checking: ‘nhdplusTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bouchra R. Nasri <bouchra.nasri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Bouchra", "R."),
                    family = "Nasri",
                    role = c("aut", "cre"),
                    email = "bouchra.nasri@gmail.com")
as necessary.
Maintainer: ‘Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "J.", "Teran"),
                      family = "Hidalgo",
                      role = c("aut", "cre"),
                      email = "sebastianteranhidalgo@gmail.com"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"),
               person(given = "Ruofan",
                      family = "Bie",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: sebastianteranhidalgo@gmail.com
    From: man/ancut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/awncut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/ncut.Rd
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
Packages required but not available: 'car', 'Hmisc'

Package suggested but not available for checking: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘sna’

Packages suggested but not available for checking: 'tergm', 'ergm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Packages required but not available: 'nbpMatching', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘heatmaply’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Edilberto Cepeda <ecepedac@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Edilberto",
                      family = "Cepeda-Cuervo",
                      role = "aut"),
               person(given = c("Maria", "Victoria"),
                      family = "Cifuentes-Amado",
                      role = "aut"),
               person(given = "Margarita",
                      family = "Marin",
                      role = "aut"),
               person(given = "Edilberto",
                      family = "Cepeda",
                      role = "cre",
                      email = "ecepedac@unal.edu.co"))
as necessary.
Packages required but not available: 'DescTools', 'MBESS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mamadou Yauck <yauck.mamadou@uqam.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mamadou",
                      family = "Yauck",
                      role = c("aut", "cre"),
                      email = "yauck.mamadou@uqam.ca"),
               person(given = c("Erica", "E.", "M."),
                      family = "Moodie",
                      role = "aut"))
as necessary.
Package required but not available: ‘RDS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSLNy7b/file105ef596c599d': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpSLNy7b/file105ef596c599d': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘ergm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'brms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpPrTMCv/Rfb06b1a95965c': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Package required but not available: ‘duckdbfs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ......Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpb1dUk0/file109bc470ffce0': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpb1dUk0/file109bc470ffce0': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Peifeng Ruan <pruan12@fudan.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peifeng",
                    family = "Ruan",
                    role = c("aut", "cre"),
                    email = "pruan12@fudan.edu.cn")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Encountered the following conversion/validation errors:
cannot open the connection
Package required but not available: ‘caret’

Packages suggested but not available for checking:
  'CORElearn', 'fastshap', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Packages suggested but not available for checking:
  'AER', 'equatiomatic', 'DescTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sean J Westwood <seanjw@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mike",
                      family = "Nowak",
                      role = "aut",
                      email = "michael.nowak@gmail.com"),
               person(given = "Solomon",
                      family = "Messing",
                      role = "aut",
                      email = "solomon.messing@gmail.com"),
               person(given = c("Sean", "J"),
                      family = "Westwood",
                      role = c("aut", "cre"),
                      email = "seanjw@stanford.edu"),
               person(given = "Dan",
                      family = "McFarland",
                      role = "aut",
                      email = "dmcfarla@stanford.edu"))
as necessary.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidygraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Li-Pang Chen <lchen723@nccu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Li-Pang",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "lchen723@nccu.edu.tw")
as necessary.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'netmeta', 'Hmisc', 'meta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'AnnotationDbi', 'genefilter', 'graphite', 'msigdbr'

Package suggested but not available for checking: ‘org.Hs.eg.db’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tianshi Lu <tianshi.lu@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianshi",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "tianshi.lu@utsouthwestern.edu")
as necessary.
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karline",
                      family = "Soetaert",
                      role = c("aut", "cre"),
                      email = "karline.soetaert@nioz.nl"),
               person(given = c("Julius", "Kipyegon"),
                      family = "Kones",
                      role = "aut",
                      email = "jkones@uonbi.ac.ke"),
               person(given = "Dick",
                      family = "van Oevelen",
                      role = "aut",
                      email = "dick.vanoevelen@nioz.nl"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'ggnetwork', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'btergm', 'ergm', 'tergm', 'sna', 'ergMargins'

Packages suggested but not available for checking: 'relevent', 'statnet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpz4HPFn/file172366b77b80a/trans_matrix.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘meta’

Packages suggested but not available for checking: 'crossnma', 'gemtc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sna’

Package suggested but not available for checking: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘benchmarks.Rmd’ using rmarkdown
--- finished re-building ‘benchmarks.Rmd’

--- re-building ‘centrality_indices.Rmd’ using rmarkdown
--- finished re-building ‘centrality_indices.Rmd’

--- re-building ‘indirect_relations.Rmd’ using rmarkdown
--- finished re-building ‘indirect_relations.Rmd’

--- re-building ‘neighborhood_inclusion.Rmd’ using rmarkdown
--- finished re-building ‘neighborhood_inclusion.Rmd’

--- re-building ‘partial_centrality.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpFqq3Sa/Rf18e4a73e035de': No space left on device

Quitting from partial_centrality.Rmd:92-102 [tg_ri]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from partial_centrality.Rmd:92-102 [tg_ri]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'partial_centrality.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘partial_centrality.Rmd’

--- re-building ‘positional_dominance.Rmd’ using rmarkdown
--- finished re-building ‘positional_dominance.Rmd’

--- re-building ‘probabilistic_cent.Rmd’ using rmarkdown
--- finished re-building ‘probabilistic_cent.Rmd’

--- re-building ‘threshold_graph.Rmd’ using rmarkdown
--- finished re-building ‘threshold_graph.Rmd’

--- re-building ‘use_case.Rmd’ using rmarkdown
--- finished re-building ‘use_case.Rmd’

SUMMARY: processing the following file failed:
  ‘partial_centrality.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘manynet’

Packages suggested but not available for checking: 'autograph', 'sna'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DiagrammeR', 'janitor', 'rcompanion'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arash A. Amini <aaamini@ucla.edu>’

The Description field contains
  <doi:10.1214/16-AOS1457> Zhang and Amini (2020) <arXiv:2012.15047> Le
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) spec_clust.Rd:33: Lost braces; missing escapes or markup?
    33 | A label vector of size n x 1 with elements in {1,2,...,K}
       |                                               ^
Running examples in ‘nett-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fast_cpl
> ### Title: CPL algorithm for community detection (fast)
> ### Aliases: fast_cpl
> ### Keywords: comm_detect
> 
> ### ** Examples
> 
> head(fast_cpl(igraph::as_adj(polblogs), 2), 50)
Error: Package "mixtools" needed for this function. Please install it.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpoiFPJw/ltx339776261e86a/adj_spec_test.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Minghui Wang <m.h.wang@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "m.h.wang@live.com"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) rc.plot.ideogram.Rd:20: Lost braces; missing escapes or markup?
    20 |  \item{las}{numeric in {0,1,2,3}; the style of chromosome labels. 0, always parallel to the track [default]; 1, always horizontal; 2, always perpendicular to the track; 3, always vertical.}
       |                        ^
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'GGally'

Package suggested but not available for checking: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'networktools', 'IsingFit'

Package suggested but not available for checking: ‘bootnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'networktools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘networkVignette.Rnw’ using Sweave

‘network’ 1.20.0 (2026-02-06), part of the Statnet Project
* ‘news(package="network")’ for changes since last version
* ‘citation("network")’ for citation information
* ‘https://statnet.org’ for help, support, and other information


Error: processing vignette 'networkVignette.Rnw' failed with diagnostics:
 chunk 29 
Error in library(sna) : there is no package called ‘sna’

--- failed re-building ‘networkVignette.Rnw’

SUMMARY: processing the following file failed:
  ‘networkVignette.Rnw’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘randnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmmTMB', 'trialr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'latentnet', 'sna', 'influential'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'IsingFit', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'smacof'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qgraph’

Package suggested but not available for checking: ‘fxregime’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'Hmisc'

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
cannot open the connection
problem found in ‘MappedNeuroVecSource-class.Rd’
Package required but not available: ‘ggseg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bradley Buchsbaum <brad.buchsbaum@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bradley", "R."),
                      family = "Buchsbaum",
                      role = "aut"),
               person(given = "Bradley",
                      family = "Buchsbaum",
                      role = "cre",
                      email = "brad.buchsbaum@gmail.com"))
as necessary.
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpMUVDLn/runri230c813a05308', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Execution halted
Maintainer: ‘Surya Tokdar <surya.tokdar@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Surya",
                    family = "Tokdar",
                    role = c("aut", "cre"),
                    email = "surya.tokdar@duke.edu")
as necessary.

The Description field contains
  may be found at <arXiv:1911.04387>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
cannot open the connection
problem found in ‘canonicalHRF.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiKQqgf/ltxf92452eb21a2/stimfunction.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘visualizations.R’
Running massageExamples to create ‘neverhpfilter-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpEUAAir/file12381285ca72d/FEDFUNDS.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Saralees Nadarajah <Saralees.Nadarajah@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "saralees.nadarajah@manchester.ac.uk"),
               person(given = "Ricardo",
                      family = "Rocha",
                      role = "aut"))
as necessary.
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(new.dist)
  > 
  > test_check("new.dist")
  Saving _problems/test_function-246.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 232 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_function.R:246:3'): functions returns a  vector with the expected size ──
  <rlib_error_package_not_found/rlang_error/error/condition>
  Error in `expect_vector(dbwd(10, alpha = 2, sigma = 2), ptype = double(), size = 1)`: The package "vctrs" is required.
  Backtrace:
      ▆
   1. └─testthat::expect_vector(...) at test_function.R:246:3
   2.   └─rlang::check_installed("vctrs")
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 232 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Ningning Xu <n.xu@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ningning",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "n.xu@lumc.nl")
as necessary.

The Description field contains
  (2021) <arXiv:2001.01541> for detailed description.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carlos Martinez <cmmm7031@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr", "Carlos", "Miguel", "Martinez"),
                      family = "Manrique",
                      role = "aut"),
               person(given = "Carlos",
                      family = "Martinez",
                      role = "cre",
                      email = "cmmm7031@gmail.com"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/nextGenShinyApps
which should likely be
  https://github.com/oobianom/nextGenShinyApps/issues
instead.
Running massageExamples to create ‘nextGenShinyApps-Ex.R’ failed
Running examples in ‘nexus-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: barplot
> ### Title: Barplot of Compositional Data
> ### Aliases: barplot barplot,CompositionMatrix-method
> 
> ### ** Examples
> 
> ## Data from Aitchison 1986
> data("hongite")
> 
> ## Coerce to compositional data
> coda <- as_composition(hongite)
> 
> ## Bar plot
> barplot(coda)
> 
> ## Data from Day et al. 2011
> data("kommos", package = "folio")
> kommos <- remove_NA(kommos, margin = 1) # Remove cases with missing values
> coda <- as_composition(kommos, groups = 1) # Coerce to compositional data
> 
> ## Use ceramic types for grouping
> barplot(coda, order_columns = TRUE)
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 't': assignment of an object of class “numeric” is not valid for @‘.Data’ in an object of class “CompositionMatrix”; is(value, "matrix") is not TRUE
Calls: barplot ... prepare_barplot -> t -> apply -> FUN -> FUN -> <Anonymous>
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘groups.Rmd’ using knitr

Quitting from groups.Rmd:71-77 [barplot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 't': assignment of an object of class "numeric" is not valid for @'.Data' in an object of class "CompositionMatrix"; is(value, "matrix") is not TRUE
---
Backtrace:
     ▆
  1. ├─graphics::barplot(major, order_rows = "Cu", space = 0)
  2. ├─nexus::barplot(major, order_rows = "Cu", space = 0)
  3. │ └─nexus (local) .local(height, ...)
  4. │   └─nexus:::prepare_barplot(...)
  5. │     ├─base::t(apply(X = z, MARGIN = 1, FUN = cumsum))
  6. │     └─base::apply(X = z, MARGIN = 1, FUN = cumsum)
  7. │       ├─methods (local) FUN(newX[, i], ...)
  8. │       └─methods (local) FUN(newX[, i], ...)
  9. │         └─methods (local) `<fn>`(`<chr>`, ".Data", "numeric")
 10. │           └─base::stop(...)
 11. └─base::.handleSimpleError(...)
 12.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'groups.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 't': assignment of an object of class "numeric" is not valid for @'.Data' in an object of class "CompositionMatrix"; is(value, "matrix") is not TRUE
--- failed re-building ‘groups.Rmd’

--- re-building ‘nexus.Rmd’ using knitr

Quitting from nexus.Rmd:142-146 [histogram]
Error: processing vignette 'nexus.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building ‘nexus.Rmd’

SUMMARY: processing the following files failed:
  ‘groups.Rmd’ ‘nexus.Rmd’

Error: Vignette re-building failed.
Execution halted
Running massageExamples to create ‘nFactors-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpjwDClx/file3fe00f2ec5404/iterativePrincipalAxis.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpoAEaHl/ltx3fe1204a43b784/bentlerParameters.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
No examples, no tests, no vignettes
Packages required but not available: 'janitor', 'nflfastR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sebastian Carl <mrcaseb@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Package required but not available: ‘nflfastR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nfl4th', 'nflfastR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.

The Description field contains
  Robotham & Howlett (2018) <arXiv:1805.09550>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fmesher’

Packages suggested but not available for checking:
  'inlabru', 'MetricGraph', 'rSPDE'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: openclipart.org
    From: inst/doc/ngram-guide.pdf
Maintainer: ‘Chung-hong Chan <chainsawtiney@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chung-hong",
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "chainsawtiney@gmail.com")
as necessary.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "drjphughesjr@gmail.com"),
               person(given = "Xiaohui",
                      family = "Cui",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Bayesian spatial filtering model of Hughes (2017) <arXiv:1706.04651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpaaP83B/file240263f4d1bf5': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpaaP83B/file240263f4d1bf5': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Randall Pruim <rpruim@calvin.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Randall",
                    family = "Pruim",
                    role = c("aut", "cre"),
                    email = "rpruim@calvin.edu")
as necessary.

The Description field contains
  http://www.cdc.gov/nchs/nhanes.htm for details.
Please enclose URLs in angle brackets (<...>).
checkRd: (-1) NHANES.Rd:278: Lost braces
   278 | \code{AgeFirstMarij}{Age participant first tried marijuana. Reported for participants aged 18 to 59 years.}
       |                     ^
Package required but not available: ‘dataRetrieval’

Packages suggested but not available for checking:
  'ggmap', 'StreamCatTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘D. Lukke Sweet <dls229@zips.uakron.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("D.", "Lukke"),
                    family = "Sweet",
                    role = c("aut", "cre"),
                    email = "dls229@zips.uakron.edu")
as necessary.
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘nhm-Ex.R’ failed
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘LOS_model.Rmd’ using rmarkdown
--- finished re-building ‘LOS_model.Rmd’

--- re-building ‘ae_attendances.Rmd’ using rmarkdown
--- finished re-building ‘ae_attendances.Rmd’

--- re-building ‘ons_mortality.Rmd’ using rmarkdown
--- finished re-building ‘ons_mortality.Rmd’

--- re-building ‘stranded_model.Rmd’ using rmarkdown

Quitting from stranded_model.Rmd:35-46 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'caret'
---
Backtrace:
    ▆
 1. └─base::library(caret)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'stranded_model.Rmd' failed with diagnostics:
there is no package called 'caret'
--- failed re-building ‘stranded_model.Rmd’

--- re-building ‘synthetic_news_data.Rmd’ using rmarkdown

Quitting from synthetic_news_data.Rmd:65-72 [synth]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'synthpop'
---
Backtrace:
    ▆
 1. └─base::library(synthpop)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'synthetic_news_data.Rmd' failed with diagnostics:
there is no package called 'synthpop'
--- failed re-building ‘synthetic_news_data.Rmd’

SUMMARY: processing the following files failed:
  ‘stranded_model.Rmd’ ‘synthetic_news_data.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘hexSticker’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) bootstrap_param_est.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootstrap_param_est.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootstrap_param_est.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_data.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_data.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_data.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "geyer@umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "geyer@umn.edu"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nichetools.Rcheck/00install.out’ for details.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy Koscik <timothy-koscik@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "R."),
                      family = "Koscik",
                      role = c("aut", "cre", "cph")),
               person(given = "Timothy",
                      family = "Koscik",
                      role = "cre",
                      email = "timothy-koscik@uiowa.edu"))
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘table.to.nii.Rd’, ‘write.nii.volume.Rd’, ‘write.nii.voxel.Rd’
Maintainer: ‘Max Hughes-Brandl <gordonmax@hotmail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Hughes-Brandl",
                    role = c("aut", "cre"),
                    email = "gordonmax@hotmail.de")
as necessary.
Maintainer: ‘Natalya Pya Arnqvist <nat.pya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalya", "Pya"),
                      family = "Arnqvist",
                      role = c("aut", "cre"),
                      email = "nat.pya@gmail.com"),
               person(given = "Vassilly",
                      family = "Voinov",
                      role = "aut"),
               person(given = "Rashid",
                      family = "Makarov",
                      role = "aut"),
               person(given = "Yevgeniy",
                      family = "Voinov",
                      role = "aut"))
as necessary.
Packages required but not available:
  'plotly', 'bipartite', 'skimr', 'mice', 'missMDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘rcarbon’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘ggspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘greensIndex.Rd’, ‘histNormal.Rd’, ‘national.SMART.Rd’
Maintainer: ‘Lennart Johansson <l.johansson@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "de Weerd",
                      role = "aut"),
               person(given = "Lennart",
                      family = "Johansson",
                      role = c("aut", "cre"),
                      email = "l.johansson@umcg.nl"))
as necessary.
Maintainer: ‘Yikai Wang <johnzon.wyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yikai",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "johnzon.wyk@gmail.com"),
               person(given = "Xiao",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Douglas Bates <bates@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("original", "from", "National", "Institutes", "for"),
                      family = "Standards",
                      role = "aut"),
               person(given = c("Technology", "http://www.itl.nist.gov/div898/strd/nls/nls_main.shtml", "R", "port", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu",
                      comment = "NIST"),
               person(given = "Douglas",
                      family = "Bates",
                      role = "cre",
                      email = "bates@stat.wisc.edu"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Troy D. Hill <Hill.Troy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Troy", "D."),
                      family = "Hill",
                      role = c("aut", "cre"),
                      email = "hill.troy@gmail.com"),
               person(given = c("Nathalie", "R."),
                      family = "Sommer",
                      role = "aut"),
               person(given = c("Caroline", "R."),
                      family = "Kanaskie",
                      role = "aut"),
               person(given = c("Emily", "A."),
                      family = "Santos",
                      role = "aut"),
               person(given = c("Autumn", "J."),
                      family = "Oczkowski",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CN_mass_data.Rd’:
    \keyword{data,}
    \keyword{isotopes,}
  File ‘allometry.Rd’:
    \keyword{data,}
  File ‘dea.Rd’:
    \keyword{data,}
    \keyword{denitrification,}
  File ‘stemHeights.Rd’:
    \keyword{NAPP,}
    \keyword{biomass,}
    \keyword{data,}
    \keyword{height,}

Found the following URLs which should use \doi (with the DOI name only):
  File ‘CN_mass_data.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘allometry.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘bCM.Rd’:
    https://doi.org/10.1002/ecy.1600
  File ‘dea.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘stemHeights.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xianyan Chen <xychen@uga.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xianyan",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "xychen@uga.edu"),
               person(given = "Xiangrong",
                      family = "Yin",
                      role = "aut",
                      email = "yinxiangrong@uky.edu"))
as necessary.
Package required but not available: ‘MLInterfaces’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sitar’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ........................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpEXwrKw/ltx3300571c651f2/recalc.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nlmixr2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nlmixr2', 'nlmixr2autoinit'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘xgxr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘nlmixr2plot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flextable', 'ggpubr', 'onbrand', 'xpose', 'xpose.nlmixr2'

Packages suggested but not available for checking: 'GGally', 'ggPMX'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Qtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carme Font <carme.font.moragon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carme",
                    family = "Font",
                    role = c("aut", "cre"),
                    email = "carme.font.moragon@gmail.com")
as necessary.
Maintainer: ‘Tianwei Yu<yutianwei@cuhk.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianwei",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "yutianwei@cuhk.edu.cn"),
               person(given = "Haodong",
                      family = "Liu",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Bootstrapping.Rmd’ using rmarkdown

Quitting from Bootstrapping.Rmd:20-25 [setup2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'car'
---
Backtrace:
    ▆
 1. └─base::library(car)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Bootstrapping.Rmd' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘Bootstrapping.Rmd’

--- re-building ‘Confidence-Bands.Rmd’ using rmarkdown
--- finished re-building ‘Confidence-Bands.Rmd’

--- re-building ‘Models-and-Functions.Rmd’ using rmarkdown
--- finished re-building ‘Models-and-Functions.Rmd’

--- re-building ‘nlraa-AgronJ-paper.Rmd’ using rmarkdown
--- finished re-building ‘nlraa-AgronJ-paper.Rmd’

--- re-building ‘nlraa.Rmd’ using rmarkdown
--- finished re-building ‘nlraa.Rmd’

SUMMARY: processing the following file failed:
  ‘Bootstrapping.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'rms', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘G. Grothendieck <ggrothendieck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "G.",
                      family = "Grothendieck",
                      role = c("aut", "cre"),
                      email = "ggrothendieck@gmail.com"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "aut",
                      comment = "nls"))
as necessary.
checkRd: (-1) anova.Rd:19: Lost braces
    19 |   Returns an object of class code{anova}.  These objects represent
       |                                  ^
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Rafael Benitez <rabesua@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mariano",
                      family = "Rodriguez-Arias",
                      role = "aut",
                      email = "arias@unex.es"),
               person(given = c("Juan", "Antonio"),
                      family = "Fernandez",
                      role = "aut",
                      email = "jfernandck@alumnos.unex.es"),
               person(given = "Javier",
                      family = "Cabello",
                      role = "aut",
                      email = "coco@unex.es"),
               person(given = "Rafael",
                      family = "Benitez",
                      role = c("aut", "cre"),
                      email = "rabesua@uv.es"))
as necessary.
cannot open the connection
problem found in ‘nltm.control.Rd’
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Oleh Komashko <oleg_komashko@ukr.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oleh",
                    family = "Komashko",
                    role = c("aut", "cre"),
                    email = "oleg_komashko@ukr.net")
as necessary.
Packages required but not available: 'netmeta', 'meta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Burak Kuersad Guenhan <burakgunhan@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'netmeta', 'meta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'meta', 'netmeta'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Phillippo <david.phillippo@bristol.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Suhai (Timothy) Liu <tim.liu@alumni.duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suhai",
                      family = "Liu",
                      role = "aut",
                      comment = "Timothy"),
               person(given = "Suhai",
                      family = "Liu",
                      role = "cre",
                      email = "tim.liu@alumni.duke.edu",
                      comment = "Timothy"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘NMRphasing_vignette.rmd’ using rmarkdown

Quitting from NMRphasing_vignette.rmd:62-76 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggpubr'
---
Backtrace:
    ▆
 1. └─base::library(ggpubr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'NMRphasing_vignette.rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘NMRphasing_vignette.rmd’

SUMMARY: processing the following file failed:
  ‘NMRphasing_vignette.rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
':::' call which should be '::': ‘NMdata:::dcastSe’
  See the note in ?`:::` about the use of this operator.
Maintainer: ‘Joseph Lipoff <josephlipoff@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "V."),
                      family = "Lipoff",
                      role = "aut"),
               person(given = "Will",
                      family = "Pauls",
                      role = "aut"),
               person(given = c("Kaylin", "C."),
                      family = "Dobbs",
                      role = "aut"),
               person(given = c("Jordan", "L."),
                      family = "Jensen",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Woods",
                      role = "aut"),
               person(given = c("Evan", "T."),
                      family = "Johnson",
                      role = "aut"),
               person(given = c("Benjamin", "F."),
                      family = "Timson",
                      role = "aut"),
               person(given = c("Scott", "D.", "Zimmerman,and", "Paul"),
                      family = "Plummer",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Lipoff",
                      role = "cre",
                      email = "josephlipoff@msn.com"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.
Maintainer: ‘Baidya Nath Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Baidya", "Nath"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘Chiu-Hsieh Hsu <pablo1639@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Ran",
                      role = "aut"),
               person(given = "Chiu-Hsieh",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "pablo1639@gmail.com"),
               person(given = "Mandi",
                      family = "Yu",
                      role = "aut"))
as necessary.
Package required but not available: ‘demography’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Elvan Ceyhan <elvanceyhan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elvan",
                    family = "Ceyhan",
                    role = c("aut", "cre"),
                    email = "elvanceyhan@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nnspat.Rcheck/00install.out’ for details.
Maintainer: ‘Zhao Yang <yangz98@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhao",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yangz98@connect.hku.hk")
as necessary.
Maintainer: ‘Yang Tian <tianyang1211@126.com>’

The Description field contains
  Grover, Jure Leskovec(2016),available at <arXiv:1607.00653>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'beastier', 'geiger', 'phylobase'

Packages suggested but not available for checking: 'RPANDA', 'TreeSim'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arnaud",
                      family = "Le Rouzic",
                      role = c("aut", "cre"),
                      email = "arnaud.le-rouzic@universite-paris-saclay.fr",
                      comment = c(ROR = "2007-2015")),
               person(given = c("Arne", "B."),
                      family = "Gjuvsland",
                      role = "aut",
                      comment = "2010"),
               person(given = "Olivier",
                      family = "Ariste",
                      role = "aut",
                      comment = "2010"))
as necessary.
checkRd: (-1) simulatePop.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:45: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Audrey Q. Fu <audreyqyfu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Audrey", "Qiuyan"),
                      family = "Fu",
                      role = "aut"),
               person(given = "Lior",
                      family = "Pachter",
                      role = "aut"),
               person(given = c("Audrey", "Q."),
                      family = "Fu",
                      role = "cre",
                      email = "audreyqyfu@gmail.com"))
as necessary.
Maintainer: ‘Flavio Santi <flavio.santi@univr.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘noisyCE2-package.Rd’:
    https://doi.org/10.1080/10618600.2016.1278003
Maintainer: ‘Tabea Rebafka <tabea.rebafka@sorbonne-universite.fr>’

The Description field contains
  Roquain, F. Villers (2020) <arXiv:1907.10176>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘nomogramEx.Rd’:
    \keyword{nomogram, survival probability}
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jing Zhang<zj391120@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zj391120@163.com"),
               person(given = "Zhi",
                      family = "Jin",
                      role = "aut"))
as necessary.
Packages required but not available: 'rms', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Burak Guris <bguris@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Burak",
                    family = "Guris",
                    role = c("aut", "cre"),
                    email = "bguris@istanbul.edu.tr")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Magnus Astrand <magnus.astrand@astrazeneca.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Magnus",
                    family = "Astrand",
                    role = c("aut", "cre"),
                    email = "magnus.astrand@astrazeneca.com")
as necessary.
install log ‘’ does not exist
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘D. Lukke Sweet <dlukkesweet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("D.", "Lukke"),
                    family = "Sweet",
                    role = c("aut", "cre"),
                    email = "dlukkesweet@gmail.com")
as necessary.
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Luis Castro Martín <luiscastro193@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Castro"),
                      family = "Martín",
                      role = c("aut", "cre"),
                      email = "luiscastro193@gmail.com"),
               person(given = c("Ramón", "Ferri"),
                      family = "García",
                      role = "aut",
                      email = "rferri@ugr.es"),
               person(given = c("María", "del", "Mar"),
                      family = "Rueda",
                      role = "aut",
                      email = "mrueda@ugr.es"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘valliant_weights.Rd’:
    https://doi.org/10.1093/jssam/smz003
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Angelo M. Mineo <angelo.mineo@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Angelo", "M."),
                    family = "Mineo",
                    role = c("aut", "cre"),
                    email = "angelo.mineo@unipa.it")
as necessary.
Packages required but not available: 'car', 'doBy'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shan Gao <gao_shan@mail.nankai.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhenfeng",
                      family = "Wu",
                      role = "aut"),
               person(given = "Shan",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "gao_shan@mail.nankai.edu.cn"))
as necessary.
Packages required but not available: 'plotly', 'badger', 'hexSticker'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cecile Proust-Lima <cecile.proust-lima@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cecile",
                      family = "Proust-Lima",
                      role = c("aut", "cre"),
                      email = "cecile.proust-lima@inserm.fr"),
               person(given = "Viviane",
                      family = "Philipps",
                      role = "aut"))
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ported", "to", "R", "by", "Alvaro", "A.", "Novo.", "Original", "by", "Joseph", "L.", "Schafer"),
                      family = "<jls@stat.psu.edu>.",
                      role = "aut",
                      email = "jls@stat.psu.edu"),
               person(given = "John",
                      family = "Fox",
                      role = "cre",
                      email = "jfox@mcmaster.ca"))
as necessary.
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pierre",
                      family = "Duchesne",
                      role = "aut"),
               person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = c("aut", "cre"),
                      email = "lafaye@unsw.edu.au"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘bipartite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hien D. Nguyen <h.nguyen7@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hien", "D."),
                    family = "Nguyen",
                    role = c("aut", "cre"),
                    email = "h.nguyen7@uq.edu.au")
as necessary.
Maintainer: ‘Mutua Kilai <kilaimutua@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mutua",
                      family = "Kilai",
                      role = c("aut", "cre"),
                      email = "kilaimutua@gmail.com"),
               person(given = "Gichuhi",
                      family = "Waititu",
                      role = "aut"),
               person(given = "Wanjoya",
                      family = "Kibira",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/NoviceDeveloperResources2.Rcheck/00install.out’ for details.
Maintainer: ‘Terry Therneau <terry.therneau@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Terry",
                    family = "Therneau",
                    role = c("aut", "cre"),
                    email = "terry.therneau@mayo.edu")
as necessary.
Maintainer: ‘Kerstin Rubarth <kerstin.rubarth@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre")),
               person(given = "Kimihiro",
                      family = "Noguchi",
                      role = "ctr"),
               person(given = "Kerstin",
                      family = "Rubarth",
                      role = "cre",
                      email = "kerstin.rubarth@charite.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frank Konietschke <frank.konietschke@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kimihiro",
                      family = "Noguchi",
                      role = "aut",
                      email = "noguchk@wwu.edu"),
               person(given = "Mahbub",
                      family = "Latif",
                      role = "aut",
                      email = "mlatif@isrt.ac.bd"),
               person(given = "Karthinathan",
                      family = "Thangavelu",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre"),
                      email = "frank.konietschke@charite.de"),
               person(given = c("Yulia", "R."),
                      family = "Gel",
                      role = "aut",
                      email = "yxg142030@utdallas.edu"),
               person(given = "Edgar",
                      family = "Brunner",
                      role = "aut",
                      email = "ebrunne1@gwdg.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘npboottprm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MKinfer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thibault Laurent <thibault.laurent@univ-tlse1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abdelaati",
                      family = "Daouia",
                      role = "aut",
                      email = "Abdelaati.Daouia@tse-fr.eu"),
               person(given = "Thibault",
                      family = "Laurent",
                      role = c("aut", "cre"),
                      email = "thibault.laurent@univ-tlse1.fr"),
               person(given = "Hohsuk",
                      family = "Noh",
                      role = "aut",
                      email = "word5810@gmail.com"))
as necessary.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ignacio López-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘beran.Rd’:
    https://doi.org/10.1093/biostatistics/kxx034
  File ‘berancv.Rd’:
    https://doi.org/10.1177/1471082X0700700404
    https://doi.org/10.1093/biostatistics/kxx034
  File ‘hpilot.Rd’:
    https://doi.org/10.1080/10485259308832566
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘latency.Rd’:
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘latencyhboot.Rd’:
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘npcure-package.Rd’:
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘probcure.Rd’:
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1002/cjs.11197
  File ‘probcurehboot.Rd’:
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1016/j.csda.2016.08.002
  File ‘testmz.Rd’:
    https://doi.org/10.1093/biomet/79.4.731
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘DefVarBandRule.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
  File ‘DiscHazRateAuxFunctions.Rd’:
    https://doi.org/10.1007/BF00128979
  File ‘TransHazRateEst.Rd’:
    http://dx.doi.org/10.1080/10485250802440184
  File ‘TutzPritscher.Rd’:
    https://doi.org/10.1007/BF00128979
  File ‘VarBandHazEst.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
  File ‘WeibHazFunctionals.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
checkRd: (-1) DiscHazRateAuxFunctions.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DiscHazRateAuxFunctions.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DiscHazRateAuxFunctions.Rd:48: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Huan Cheng <hcheng1118@hotmail.com>’

The Description field contains
  Cheng and He (2021) <arXiv:2110.03833>. The references for sample size
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Robin Ristl <robin.ristl@meduniwien.ac.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘examples.Rmd’ using rmarkdown
--- finished re-building ‘examples.Rmd’

--- re-building ‘usage.Rmd’ using rmarkdown
Warning in file(con, "w") :
  cannot open file '/tmp/Rtmpp4h2gW/rmarkdown-str40c104986cef7.html': No space left on device
Error: processing vignette 'usage.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘usage.Rmd’

SUMMARY: processing the following file failed:
  ‘usage.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘explanation.Rmd’ using rmarkdown

Quitting from explanation.Rmd:43-73 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'survminer'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'explanation.Rmd' failed with diagnostics:
there is no package called 'survminer'
--- failed re-building ‘explanation.Rmd’

--- re-building ‘weighted_log_rank_tests.Rmd’ using rmarkdown
--- finished re-building ‘weighted_log_rank_tests.Rmd’

SUMMARY: processing the following file failed:
  ‘explanation.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Frank Farach <frank.farach@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Daniel E. Weeks <weeks@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "V"),
                      family = "Baron",
                      role = "aut",
                      email = "rvb5@pitt.edu"),
               person(given = "Nandita",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Xinyu",
                      family = "Tang",
                      role = "aut"),
               person(given = c("Daniel", "E."),
                      family = "Weeks",
                      role = c("aut", "cre"),
                      email = "weeks@pitt.edu"))
as necessary.
Package required but not available: ‘parafac4microbiome’

Package suggested but not available for checking: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xin Tian <tianxtt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "tianxtt@gmail.com"),
               person(given = "Colin",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Chung-Hsing Chen <chchen@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chung-Hsing",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "chchen@nhri.org.tw"),
               person(given = "I-Shou",
                      family = "Chang",
                      role = "aut"),
               person(given = c("Chao", "A."),
                      family = "Hsiung",
                      role = "aut"))
as necessary.
Maintainer: ‘Jochen Einbeck <jochen.einbeck@durham.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jochen",
                      family = "Einbeck",
                      role = c("aut", "cre"),
                      email = "jochen.einbeck@durham.ac.uk"),
               person(given = "Ross",
                      family = "Darnell",
                      role = "aut"),
               person(given = "John",
                      family = "Hinde",
                      role = "aut"))
as necessary.
Maintainer: ‘Scott Powers <saberpowers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Scott",
                      family = "Powers",
                      role = c("aut", "cre"),
                      email = "saberpowers@gmail.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
install log ‘’ does not exist
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Maintainer: ‘Oleg Badunenko <oleg.badunenko@brunel.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oleg",
                      family = "Badunenko",
                      role = c("aut", "cre"),
                      email = "oleg.badunenko@brunel.ac.uk"),
               person(given = "Pavlo",
                      family = "Mozharovskyi",
                      role = "aut"),
               person(given = "Yaryna",
                      family = "Kolomiytseva",
                      role = "aut"))
as necessary.
Maintainer: ‘Yong Wang <yongwang@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yong",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "yongwang@auckland.ac.nz")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nrba.Rcheck/00install.out’ for details.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Eisuke Inoue <eisuke.inoue@marianna-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eisuke",
                    family = "Inoue",
                    role = c("aut", "cre"),
                    email = "eisuke.inoue@marianna-u.ac.jp")
as necessary.
Maintainer: ‘Benjamin Groebe <ben.groebe@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mde.arfima.Rd’:
    https://doi.org/10.1111/j.1368-423X.2007.00202.x
  File ‘mle.arfima.Rd’:
    https://doi.org/10.1111/j.2517-6161.1995.tb02054.x
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ming-Chang (Alan) Lee <alan9956@ydu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ching-Shih",
                      family = "Tsou",
                      role = "aut",
                      email = "cstsou@mail.ntcb.edu.tw",
                      comment = "Vince"),
               person(given = "Ming-Chang",
                      family = "Lee",
                      role = "cre",
                      email = "alan9956@ydu.edu.tw",
                      comment = "Alan"))
as necessary.
Maintainer: ‘Artem Shramko <art.shramko@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Artem",
                    family = "Shramko",
                    role = c("aut", "cre"),
                    email = "art.shramko@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘nsga3-package.Rd’:
    \keyword{algorithm,}
    \keyword{nsga3,}
    \keyword{omptimisation,}
    \keyword{optimisation,}
    \keyword{preprocessing,}
    \keyword{selection,}
    \keyword{wrapper,}
Packages required but not available: 'Hmisc', 'np'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sonia Perez Fernandez <uo217889@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sonia", "Perez"),
                    family = "Fernandez",
                    role = c("aut", "cre"),
                    email = "uo217889@uniovi.es")
as necessary.
Package required but not available: ‘sde’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daliang Ning <ningdaliang@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daliang",
                    family = "Ning",
                    role = c("aut", "cre"),
                    email = "ningdaliang@ou.edu")
as necessary.
Package required but not available: ‘iCAMP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) MSM.fit.Rd:21: Lost braces
    21 | \code{MSM.fit} returns an object of class code{MSM.lm} or \code{MSM.glm}, depending on the input model.
       |                                               ^
checkRd: (-1) SMC.Smooth.Rd:25: Lost braces; missing escapes or markup?
    25 | observation at current time step. It should return {xx} (the samples xt) and
       |                                                    ^
checkRd: (-1) SMC.Smooth.Rd:26: Lost braces; missing escapes or markup?
    26 | {logww} (their corresponding log weight).}
       | ^
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'ggraph', 'ggtree', 'scistreer', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Chris Hartgerink [rev] (<https://orcid.org/0000-0003-1050-6809>), Ulysse Boucherie [ctb] (https://www.linkedin.com/in/ulysse-boucherie-7a3b2b111/), Joshua W. Lambert [ctb] (<https://orcid.org/0000-0001-5218-3046>), Karim Mané [ctb] (<https://orcid.org/0000-0002-9892-2999>), Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>), Bankole Ahadzie [aut, cre], London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62)’
  Authors@R: ‘Chris Hartgerink [rev] (ORCID: <https://orcid.org/0000-0003-1050-6809>), Ulysse Boucherie [ctb] (https://www.linkedin.com/in/ulysse-boucherie-7a3b2b111/), Joshua W. Lambert [ctb] (ORCID: <https://orcid.org/0000-0001-5218-3046>), Karim Mané [ctb] (ORCID: <https://orcid.org/0000-0002-9892-2999>), Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Bankole Ahadzie [aut, cre], London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: <https://ror.org/00a0jsq62>)’
Maintainer: ‘Maarten Kruijver <maarten.kruijver@esr.cri.nz>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Gilbert",
                      role = c("aut", "cre"),
                      email = "pgilbert.ttv9z@ncf.ca"),
               person(given = "Ravi",
                      family = "Varadhan",
                      role = "aut"))
as necessary.
Packages required but not available: 'car', 'caret', 'olsrr'

Depends: includes the non-default packages:
  'Cubist', 'Metrics', 'arm', 'brnn', 'broom', 'car', 'caret',
  'corrplot', 'doParallel', 'dplyr', 'e1071', 'earth', 'gam', 'gbm',
  'ggplot2', 'glmnet', 'gridExtra', 'htmltools', 'htmlwidgets',
  'ipred', 'leaps', 'nnet', 'olsrr', 'parallel', 'pls', 'purrr',
  'randomForest', 'reactable', 'readr', 'rpart', 'scales', 'tidyr',
  'tree', 'xgboost'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpaNYwEi/ltx33f936df42342', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpaNYwEi/ltx33f936df42342/alignment.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Package required but not available: ‘textclean’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Moritz Hennicke <AAoritz@posteo.de>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/nuts
which should likely be
  https://github.com/ropensci/nuts/issues
instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘nuts.Rmd’ using knitr

Quitting from nuts.Rmd:94-107 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggpubr'
---
Backtrace:
    ▆
 1. └─base::library(ggpubr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'nuts.Rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘nuts.Rmd’

SUMMARY: processing the following file failed:
  ‘nuts.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘dae’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Finnbar Lee <lee.finnbar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'rsample', 'smacof'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘o2ools.Rmd’ using rmarkdown

Quitting from o2ools.Rmd:123-152 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'epicontacts'
---
Backtrace:
    ▆
 1. └─base::library(epicontacts)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'o2ools.Rmd' failed with diagnostics:
there is no package called 'epicontacts'
--- failed re-building ‘o2ools.Rmd’

SUMMARY: processing the following file failed:
  ‘o2ools.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Waddell",
                    role = c("aut", "cre"),
                    email = "jason.waddell@openanalytics.eu")
as necessary.
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jason",
                      family = "Waddell",
                      role = c("aut", "cre"),
                      email = "jason.waddell@openanalytics.eu"),
               person(given = "Willem",
                      family = "Ligtenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Rougier",
                      role = "aut",
                      email = "j.c.rougier@bristol.ac.uk"),
               person(given = c("Robin", "K.", "S."),
                      family = "Hankin",
                      role = "cre",
                      email = "hankin.robin@gmail.com"))
as necessary.
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philip Stubbings <phil@parasec.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Stubbings",
                    role = c("aut", "cre"),
                    email = "phil@parasec.net")
as necessary.
Maintainer: ‘Alejandro Ordonez <ordonezjosealejandro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Ordonez",
                      role = c("aut", "cre"),
                      email = "ordonezjosealejandro@gmail.com"),
               person(given = c("Marcos", "O."),
                      family = "Prates",
                      role = "aut"),
               person(given = c("Larissa", "A."),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos.",
                      role = "aut"))
as necessary.

The Description field contains
  Details can be found in Ordonez et al. (2020) <arXiv:2004.04341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Tengfei",
                      family = "Yin",
                      role = "aut"))
as necessary.
Package required but not available: ‘pec’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Snyder <jcs8v6@mail.missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zheng",
                      role = "aut"),
               person(given = "John",
                      family = "Snyder",
                      role = "cre",
                      email = "jcs8v6@mail.missouri.edu"))
as necessary.
checkRd: (-1) OBMb.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Paul R. Hibbing <paulhibbing@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/oceanic.Rcheck/00install.out’ for details.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luke Miller <contact@lukemiller.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dan Kelley <Dan.Kelley@Dal.Ca>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘adespatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrea Pagotto <ajpagotto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Pagotto",
                    role = c("aut", "cre"),
                    email = "ajpagotto@gmail.com")
as necessary.

The Description field contains
  and MacKay (2007) <arXiv:0710.3742> for univariate or multivariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) onlineCPD.Rd:35: Lost braces
    35 |  function(x, lambda){const_hazard(x, lambda=100)}
       |                     ^
Package required but not available: ‘rtracklayer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'janitor', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘octopus_api.R’
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sevvandi Kandanaarachchi <sevvandik@gmail.com>’

The Description field contains
  anomalies (Kandanaarachchi, Hyndman 2022) <arXiv:2210.07407>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘qs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Sascha",
                      family = "Thomsen",
                      role = "aut"))
as necessary.
Packages required but not available: 'caret', 'tidymodels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpjaGx34/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘discrete.Rmd’ using rmarkdown
--- finished re-building ‘discrete.Rmd’

--- re-building ‘functions.Rmd’ using rmarkdown
--- finished re-building ‘functions.Rmd’

--- re-building ‘odin.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmppE9zbt/Rf4909d6182e102': No space left on device

Quitting from odin.Rmd:84-86 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from odin.Rmd:84-86 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'odin.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘odin.Rmd’

SUMMARY: processing the following file failed:
  ‘odin.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmYXOsI/file4968276d70d80': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpmYXOsI/file4968276d70d80': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Muntashir-Al-Arefin <muntashir.a2i@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Muntashir-Al-Arefin",
                    role = c("aut", "cre"),
                    email = "muntashir.a2i@gmail.com")
as necessary.
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘odr.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpolHkHT/Rf42b433f1d8b81': No space left on device

Quitting from odr.Rmd:93-103 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from odr.Rmd:93-103 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'odr.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘odr.Rmd’

SUMMARY: processing the following file failed:
  ‘odr.Rmd’

Error: Vignette re-building failed.
Execution halted
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DatabaseConnector’

Packages suggested but not available for checking:
  'Andromeda', 'Eunomia', 'FeatureExtraction'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DatabaseConnector’

Package suggested but not available for checking: ‘Eunomia’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DatabaseConnector’

Package suggested but not available for checking: ‘Eunomia’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘hexSticker’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Packages required but not available: 'officer', 'rvg'

Package suggested but not available for checking: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/officer.Rcheck/00install.out’ for details.
Packages required but not available: 'parsnip', 'poissonreg'

Packages suggested but not available for checking:
  'recipes', 'tune', 'workflows', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = "Qianying",
                      family = "Liu",
                      role = "aut"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggpubr', 'tmap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tigger', 'alakazam'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DatabaseConnector’

Package suggested but not available for checking: ‘ResultModelManager’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DatabaseConnector', 'ResultModelManager'

Package suggested but not available for checking: ‘Eunomia’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hai-Tang Chiou <htchiou1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hai-Tang",
                      family = "Chiou",
                      role = c("aut", "cre"),
                      email = "htchiou1@gmail.com"),
               person(given = "Ching-Kang",
                      family = "Ing",
                      role = "aut"),
               person(given = c("Tze", "Leung"),
                      family = "Lai",
                      role = "aut"))
as necessary.
Packages required but not available: 'cvms', 'ggmcmc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘set_parameters.Rd’
Error(s) in re-building vignettes:
  ...
--- re-building ‘ohsome.Rmd’ using rmarkdown

Quitting from ohsome.Rmd:79-79
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
there is no package called 'mapview'
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from ohsome.Rmd:79-79
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
loadNamespace(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from ohsome.Rmd:79-79
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapview
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from ohsome.Rmd:79-79
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ohsome.Rmd' failed with diagnostics:
there is no package called 'mapview'
--- failed re-building ‘ohsome.Rmd’

SUMMARY: processing the following file failed:
  ‘ohsome.Rmd’

Error: Vignette re-building failed.
Execution halted
install log ‘’ does not exist
Package required but not available: ‘Deducer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Packages required but not available: 'bbw', 'car'

Package suggested but not available for checking: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

Packages suggested but not available for checking:
  'car', 'clusterProfiler', 'ggpubr', 'msigdbr', 'rstatix', 'FSA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matheus H. J. Saldanha <mhjsaldanha@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/matheushjs/ollggamma
which should likely be
  https://github.com/matheushjs/ollggamma/issues
instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OLStrajr.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’
Maintainer: ‘Yujiao Mai <yujiaomai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yujiao",
                      family = "Mai",
                      role = c("cre", "aut"),
                      email = "yujiaomai@gmail.com"),
               person(given = c("Deo", "Kumar"),
                      family = "Srivastava",
                      role = "aut"),
               person(given = c("Kevin", "R."),
                      family = "Krull",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggpubr', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hae Kyung Im <haky@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hae", "Kyung"),
                      family = "Im",
                      role = c("aut", "cre"),
                      email = "haky@uchicago.edu"),
               person(given = c("Heather", "E."),
                      family = "Wheeler",
                      role = "aut"),
               person(given = c("Keston", "Aquino"),
                      family = "Michaels",
                      role = "aut"),
               person(given = "Vassily",
                      family = "Trubetskoy",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘krigr_cross_validation.Rd’:
    \keyword{prediction,}
  File ‘make_PCs_irlba.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
  File ‘make_PCs_svd.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
Error(s) in re-building vignettes:
  ...
--- re-building ‘OmicNavigatorAPI.Rnw’ using Sweave
OmicNavigator R package version: 1.19.0
The app is not installed. Install it with installApp()
Installing study "ABC" in /tmp/Rtmph0th51/file4ef402ea3fa63
Exporting study "ABC" as an R package
Note: No maintainer email was specified. Using the placeholder: Unknown <unknown@unknown>
Calculating pairwise overlaps. This may take a while...
Exported study to /tmp/Rtmph0th51/ONstudyABC

Error: processing vignette 'OmicNavigatorAPI.Rnw' failed with diagnostics:
 chunk 3 (label = test-data) 
Error in install.packages(tmpPkgDir, lib = library, repos = NULL, type = "source",  : 
  (converted from warning) installation of package ‘/tmp/Rtmph0th51/ONstudyABC’ had non-zero exit status

--- failed re-building ‘OmicNavigatorAPI.Rnw’

--- re-building ‘OmicNavigatorUsersGuide.Rnw’ using Sweave
OmicNavigator R package version: 1.19.0
The app is not installed. Install it with installApp()
Installing study "vignetteExample" in /tmp/RtmpfDDQuT/file4f21799760bb
Exporting study "vignetteExample" as an R package
Note: No maintainer email was specified. Using the placeholder: Unknown <unknown@unknown>
Calculating pairwise overlaps. This may take a while...
Exported study to /tmp/RtmpfDDQuT/ONstudyvignetteExample
Success!
Returning "default" features for modelID "modelThatDoesntExistYet"
--- finished re-building ‘OmicNavigatorUsersGuide.Rnw’

SUMMARY: processing the following file failed:
  ‘OmicNavigatorAPI.Rnw’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'ggpubr', 'janitor'

Packages suggested but not available for checking:
  'caret', 'recipes', 'parsnip', 'workflows', 'rsample', 'tune'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ctassoc.Rd’:
    https://doi.org/10.1080/03610927608827353
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/omicwas.Rcheck/00install.out’ for details.
Package required but not available: ‘omopgenerics’

Packages suggested but not available for checking:
  'CDMConnector', 'PatientProfiles'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'omopgenerics', 'PatientProfiles'

Packages suggested but not available for checking:
  'CDMConnector', 'omock', 'OmopSketch', 'visOmopResults'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

Packages suggested but not available for checking: 'CDMConnector', 'omock'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'dbplyr', 'omopgenerics'

Packages suggested but not available for checking:
  'omock', 'CDMConnector', 'OmopSketch', 'sparklyr',
  'DatabaseConnector'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'CohortConstructor', 'omopgenerics', 'PatientProfiles'

Packages suggested but not available for checking:
  'CDMConnector', 'CodelistGenerator', 'CohortCharacteristics',
  'flextable', 'OmopViewer', 'omock', 'visOmopResults', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘omopgenerics’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'omopgenerics', 'visOmopResults'

Packages suggested but not available for checking:
  'CDMConnector', 'CodelistGenerator', 'CohortCharacteristics',
  'CohortConstructor', 'CohortSurvival', 'DiagrammeR',
  'DrugUtilisation', 'IncidencePrevalence', 'MeasurementDiagnostics',
  'omock', 'OmopSketch', 'PatientProfiles', 'plotly', 'shiny.fluent'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FSA', 'rstatix', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

Package suggested but not available for checking: ‘cmdstanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aniko Szabo <aszabo@mcw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aniko",
                      family = "Szabo",
                      role = c("aut", "cre"),
                      email = "aszabo@mcw.edu"),
               person(given = "Lisa",
                      family = "Pappas",
                      role = "aut"))
as necessary.
checkRd: (-1) oncotree.fit.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Packages required but not available: 'ckanr', 'lexicon'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric E. Graves <gravcon5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eric", "E."),
                    family = "Graves",
                    role = c("aut", "cre"),
                    email = "gravcon5@gmail.com")
as necessary.
Packages required but not available: 'plotly', 'smacof', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Holger von Jouanne-Diedrich <holger.jouanne-diedrich@h-ab.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "von Jouanne-Diedrich",
                    role = c("aut", "cre"),
                    email = "holger.jouanne-diedrich@h-ab.de")
as necessary.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ivreg’

Packages suggested but not available for checking: 'AER', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Package suggested but not available for checking: ‘AID’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpR8WN3F/ltx5bf954c80fe41/Oil.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘VIM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jun Li <jli49@kent.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lingjun",
                      family = "Li",
                      role = "aut"),
               person(given = "Jun",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "jli49@kent.edu"))
as necessary.

The Description field contains
  <arXiv:1911.07762>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpYhPeqF/file4a29c3685c7cb.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘David Degras <ddegrasv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Degras",
                      role = c("aut", "cre"),
                      email = "ddegrasv@gmail.com"),
               person(given = "Herve",
                      family = "Cardot",
                      role = "ctb"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpR0xjO0/file42c465854750e': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpR0xjO0/file42c465854750e': No such file or directory
Error in file(con, "r") : cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tab_onsv.R’ ‘tab_onsv.Rd’
Maintainer: ‘Sergei Tarasov <sergei.tarasov@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Tarasov",
                    role = c("aut", "cre"),
                    email = "sergei.tarasov@helsinki.fi")
as necessary.
Package required but not available: ‘sunburstR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>’

The BugReports field in DESCRIPTION has
  https://github.com/sthawinke/oosse
which should likely be
  https://github.com/sthawinke/oosse/issues
instead.
Maintainer: ‘Philipp Külpmann <philipp@kuelpmann.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘labelled’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de",
                      comment = c(ORCID = "0000-0002-5818-6958")),
               person(given = "Sebastian",
                      family = "Malkusch",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6766-140X")),
               person(given = "Alfred",
                      family = "Ultsch",
                      role = "aut",
                      comment = c(ORCID = "0000-0002-7845-3283")))
as necessary.
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Petr",
                      family = "Simecek",
                      role = "aut",
                      email = "simecek@gmail.com"),
               person(given = "Juergen",
                      family = "Pilz",
                      role = "aut",
                      email = "juergen.pilz@aau.at"),
               person(given = "Mingui",
                      family = "Wang",
                      role = "aut",
                      email = "mail.mwang@gmail.com"),
               person(given = "Albrecht",
                      family = "Gebhardt.",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
cannot open the connection
cannot open the connection
problems found in ‘oc_forward_df.Rd’, ‘oc_key_present.Rd’
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
License stub is invalid DCF.
Running ‘buffer.R’ [0s/1s]
  Comparing ‘buffer.Rout’ to ‘buffer.Rout.save’ ...
5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< > 
  Running ‘kernel.R’ [2s/3s]
  Comparing ‘kernel.Rout’ to ‘kernel.Rout.save’ ...
5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< >
Warning in file(con, "w") :
  cannot open file '/tmp/RtmpoIPC0S/file518b814f05dd3': No space left on device
Error in file(con, "w") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘ckanr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kari Gunnarsson <kari.gunnarsson@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kari",
                    family = "Gunnarsson",
                    role = c("aut", "cre"),
                    email = "kari.gunnarsson@outlook.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .........Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpbk2YG9/ltx5fc1042aca4d0/log_service.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘format_search_term.R’ ‘openFDA.R’
Packages required but not available: 'tidyverse', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/openintro.Rcheck/00install.out’ for details.
Maintainer: ‘Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuseppe",
                      family = "Casalicchio",
                      role = c("aut", "cre"),
                      email = "giuseppe.casalicchio@stat.uni-muenchen.de"),
               person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Dominik",
                      family = "Kirchhoff",
                      role = "aut",
                      email = "dom.kirchhoff@gmail.com"),
               person(given = "Michel",
                      family = "Lang",
                      role = "aut",
                      email = "michellang@gmail.com"),
               person(given = "Benjamin",
                      family = "Hofner",
                      role = "aut",
                      email = "benjamin.hofner@fau.de"),
               person(given = "Jakob",
                      family = "Bossek",
                      role = "aut",
                      email = "j.bossek@gmail.com"),
               person(given = "Pascal",
                      family = "Kerschke",
                      role = "aut",
                      email = "kerschke@uni-muenster.de"),
               person(given = "Joaquin",
                      family = "Vanschoren",
                      role = "aut",
                      email = "joaquin.vanschoren@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘OpenRange_api_load_species.Rd’ ‘OpenRange_api_species.Rd’
    ‘OpenRange_load_species.Rd’ ‘OpenRange_sf.R’ ‘OpenRange_species.Rd’
Error(s) in re-building vignettes:
  ...
--- re-building ‘OpenRange.rmd’ using rmarkdown

Quitting from OpenRange.rmd:36-62 [get metadata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'OpenRange.rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘OpenRange.rmd’

SUMMARY: processing the following file failed:
  ‘OpenRange.rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggmap', 'RPresto'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Win Cowger <wincowger@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#Open-Specy_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .........Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZHaobh/ltx7345a7de985a9/wb_dims.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available:
  'AdaptGauss', 'DistributionOptimization', 'mixtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'mice', 'miceRanger'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'haven', 'janitor', 'sjPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
checkRd: (-1) MonteCarlo.Rd:23: Lost braces
    23 | N is computed from \code{p} length. M is code{10^4} by default.
       |                                              ^
Package required but not available: ‘car’

Package suggested but not available for checking: ‘sampleSelection’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Seung Won Hyun <yellowatom09@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seung", "Won"),
                      family = "Hyun",
                      role = c("aut", "cre"),
                      email = "yellowatom09@gmail.com"),
               person(given = c("Weng", "Kee"),
                      family = "Wong",
                      role = "aut"),
               person(given = "Yarong",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Mizanur Khondoker <mizanur.khondoker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mizanur",
                    family = "Khondoker",
                    role = c("aut", "cre"),
                    email = "mizanur.khondoker@gmail.com")
as necessary.
Maintainer: ‘Carlos de la Calle-Arroyo <carlos.calle.arroyo@gmail.com>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpzCVpRy/Rf4931b59ffe5f9': No space left on device
Maintainer: ‘Bruno Remillard <bruno.remillard@hec.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Remillard",
                    role = c("aut", "cre"),
                    email = "bruno.remillard@hec.ca")
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) drawdesign.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:44: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘did’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicholas Hamilton <n.hamilton@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "n.hamilton@unsw.edu.au")
as necessary.
Package required but not available: ‘recipes’

Packages suggested but not available for checking:
  'tidymodels', 'workflows', 'parsnip'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Monica Lopez Raton <monica.lopez.raton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monica",
                      family = "Lopez-Raton",
                      role = "aut"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"),
               person(given = c("Monica", "Lopez"),
                      family = "Raton",
                      role = "cre",
                      email = "monica.lopez.raton@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘optimall-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: multiwave_diagram
> ### Title: Print Summary Diagram of Multiwave Object
> ### Aliases: multiwave_diagram
> 
> ### ** Examples
> 
> MySurvey <- multiwave(phases = 2, waves = c(1, 3))
> multiwave_diagram(MySurvey)
Error: Please install DiagrammeR: install.packages('DiagrammeR').
         Otherwise, try 'summary()'
Execution halted
Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(optimall)
  > 
  > test_check("optimall")
  Saving _problems/test-multiwave_diagram-38.R
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 305 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On Linux (1): 'test-optimall_shiny.R:15:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-multiwave_diagram.R:38:3'): multiwave_diagram works ────────────
  Error: Please install DiagrammeR: install.packages('DiagrammeR').
           Otherwise, try 'summary()'
  Backtrace:
      ▆
   1. └─optimall::multiwave_diagram(MySurvey) at test-multiwave_diagram.R:38:3
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 305 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Michael",
                      family = "Sklar",
                      role = "aut"),
               person(given = c("Abba", "M."),
                      family = "Krieger",
                      role = "aut"),
               person(given = "David",
                      family = "Azriel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  M. Krieger, Michael Sklar and David Azriel (2020) <arXiv:1905.03337>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘GreedyExperimentalDesign’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiao Lin <xlin3@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiao",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "xlin3@mdanderson.org"),
               person(given = "Xuelin",
                      family = "Huang",
                      role = "aut",
                      email = "xlhuang@mdanderson.org"))
as necessary.
Maintainer: ‘Enrique del Castillo <exd13@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Enrique", "del"),
                      family = "Castillo",
                      role = c("aut", "cre"),
                      email = "exd13@psu.edu"),
               person(given = "Peng",
                      family = "Chen",
                      role = "aut"),
               person(given = "Adam",
                      family = "Meyers",
                      role = "aut"),
               person(given = "John",
                      family = "Hunt",
                      role = "aut"),
               person(given = "James",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Package required but not available: ‘DepthProc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Vithor Rosa Franco <vithorfranco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vithor", "Rosa"),
                    family = "Franco",
                    role = c("aut", "cre"),
                    email = "vithorfranco@gmail.com")
as necessary.

The Description field contains
  Ruder (2016) <arXiv:1609.04747v2>. Currently, the Steepest 2-Groups
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kai Husmann <kai.husmann@uni-goettingen.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘oeli’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Florian Gerber <flora.fauna.gerber@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Edgar Bueno <edgar.bueno@stat.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edgar",
                    family = "Bueno",
                    role = c("aut", "cre"),
                    email = "edgar.bueno@stat.su.se")
as necessary.
Maintainer: ‘Mitchell Lyons <mitchell.lyons@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘find_optimal.Rd’:
    \keyword{optimal,}
    \keyword{partition,}
  File ‘get_characteristic.Rd’:
    \keyword{characteristic,}
    \keyword{diagnostic,}
  File ‘merge_clusters.Rd’:
    \keyword{iterative,}
    \keyword{merging,}
    \keyword{reallocation,}
Maintainer: ‘Antoine Champion <antoine.champion@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Champion",
                    role = c("aut", "cre"),
                    email = "antoine.champion@outlook.com")
as necessary.
Maintainer: ‘Doug Kelkhoff <doug.kelkhoff@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://matrix.to/#/#r-pkg-options:matrix.org
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘John T. Buynak <jbuynak94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Buynak",
                    role = c("aut", "cre"),
                    email = "jbuynak94@gmail.com")
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘optionvega.Rd’, ‘puteval.Rd’, ‘putgreek.Rd’, ‘putpremium.Rd’
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpxjlqbg/Rf51cac1e5254aa': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpBg3i0q/Rf518a615e90481': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Robin Wellmann <r.wellmann@uni-hohenheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Wellmann",
                    role = c("aut", "cre"),
                    email = "r.wellmann@uni-hohenheim.de")
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpEROQQ2/libloc_196_ea41e0219f2a0aee.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Maintainer: ‘Prakash <prakash2@uwalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Prakash",
                    role = c("aut", "cre"),
                    email = "prakash2@uwalumni.com",
                    comment = "PKS Prakash")
as necessary.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "H."),
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jaekim8080@gmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dunn.test’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘building-two-body-orbits.Rmd’ using rmarkdown
--- finished re-building ‘building-two-body-orbits.Rmd’

--- re-building ‘custom-visualization.Rmd’ using rmarkdown

Quitting from custom-visualization.Rmd:79-124 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'custom-visualization.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘custom-visualization.Rmd’

--- re-building ‘examples.Rmd’ using rmarkdown
--- finished re-building ‘examples.Rmd’

--- re-building ‘further-reading.Rmd’ using rmarkdown
--- finished re-building ‘further-reading.Rmd’

--- re-building ‘keplerian-elements.Rmd’ using rmarkdown
--- finished re-building ‘keplerian-elements.Rmd’

--- re-building ‘physical-constants.Rmd’ using rmarkdown
--- finished re-building ‘physical-constants.Rmd’

--- re-building ‘plotting-3d.Rmd’ using rmarkdown
--- finished re-building ‘plotting-3d.Rmd’

--- re-building ‘quick-start.Rmd’ using rmarkdown
--- finished re-building ‘quick-start.Rmd’

--- re-building ‘reference-frames.Rmd’ using rmarkdown
--- finished re-building ‘reference-frames.Rmd’

--- re-building ‘roadmap.Rmd’ using rmarkdown
--- finished re-building ‘roadmap.Rmd’

--- re-building ‘the-physics.Rmd’ using rmarkdown
--- finished re-building ‘the-physics.Rmd’

--- re-building ‘unstable-orbits.Rmd’ using rmarkdown
--- finished re-building ‘unstable-orbits.Rmd’

SUMMARY: processing the following file failed:
  ‘custom-visualization.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'

Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
File ‘orbweaver/libs/orbweaver.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gero",
                    family = "Szepannek",
                    role = c("aut", "cre"),
                    email = "gero.szepannek@web.de")
as necessary.
Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adetayo",
                      family = "Kasim",
                      role = "aut"),
               person(given = "Martin",
                      family = "Otava",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Rudradev",
                      family = "Sengupta",
                      role = "cre",
                      email = "rudradev.sengupta@uhasselt.be"))
as necessary.
Package required but not available: ‘brms’

Packages suggested but not available for checking:
  'haven', 'Hmisc', 'glmmTMB', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emily V. Dressler <EmilyVDressler@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emily", "V."),
                      family = "Dressler",
                      role = c("aut", "cre"),
                      email = "emilyvdressler@gmail.com"),
               person(given = c("PhD", "Zhengyan"),
                      family = "Huang",
                      role = "aut"))
as necessary.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘orderly-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: orderly_location_push
> ### Title: Push tree to location
> ### Aliases: orderly_location_push
> 
> ### ** Examples
> 
> # Two roots, one local and one representing some remote orderly
> # location.  The remote location must use a file store at present.
> local <- orderly_example()
✔ Created orderly root at '/tmp/RtmpKll8YL/orderly_ex_5860321fe456b'
Error: [ENOSPC] Failed to make directory '/tmp/RtmpKll8YL/orderly_ex_5860321fe456b/src': no space left on device
Execution halted
Ran 22/22 deferred expressions
Error(s) in re-building vignettes:
  ...
--- re-building ‘collaboration.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpDzCJjd/Rf6f289713647a2': No space left on device

Quitting from collaboration.Rmd:169-171 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from collaboration.Rmd:169-171 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'collaboration.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘collaboration.Rmd’

--- re-building ‘dependencies.Rmd’ using rmarkdown
--- finished re-building ‘dependencies.Rmd’

--- re-building ‘details.Rmd’ using rmarkdown
--- finished re-building ‘details.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘metadata.Rmd’ using rmarkdown
--- finished re-building ‘metadata.Rmd’

--- re-building ‘migrating.Rmd’ using rmarkdown
--- finished re-building ‘migrating.Rmd’

--- re-building ‘orderly.Rmd’ using rmarkdown
--- finished re-building ‘orderly.Rmd’

--- re-building ‘plugins.Rmd’ using rmarkdown
--- finished re-building ‘plugins.Rmd’

--- re-building ‘query.Rmd’ using rmarkdown
--- finished re-building ‘query.Rmd’

--- re-building ‘troubleshooting.Rmd’ using rmarkdown
--- finished re-building ‘troubleshooting.Rmd’

SUMMARY: processing the following file failed:
  ‘collaboration.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "Alberto", "Cardozo"),
                    family = "Delgado",
                    role = c("aut", "cre"),
                    email = "cardozorpackages@gmail.com")
as necessary.
Maintainer: ‘Christian Sims <christian_j_sims@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Sims",
                    role = c("aut", "cre"),
                    email = "christian_j_sims@yahoo.com")
as necessary.
Maintainer: ‘Philippe Lambert <p.lambert@uliege.be>’

Reading Rd files failed with message:
  cannot open the connection

The Description field contains
  <doi:10.1177/1471082X231181173> ; Preprint: <arXiv:2210.01668>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ordinalbayes.Rcheck/00install.out’ for details.
Maintainer: ‘Marco Corneli <marcogenni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Corneli",
                      role = c("aut", "cre"),
                      email = "marcogenni@gmail.com"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"))
as necessary.
Maintainer: ‘Ken Ryan <kjryan@mail.wvu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ken",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "kjryan@mail.wvu.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
problem found in ‘Cliff_dependent_compute_from_table.Rd’
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabriel Okasa <okasa.gabriel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriel",
                      family = "Okasa",
                      role = c("aut", "cre"),
                      email = "okasa.gabriel@gmail.com"),
               person(given = "Michael",
                      family = "Lechner",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Lechner & Okasa (2019) <arXiv:1907.02436>. The Ordered Forest flexibly
  2017) <arXiv:1508.04409>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) orf.Rd:74: Lost braces
    74 | matrix of covariates \code{X} and a vector of outcomes 'code{Y} to the \code{orf}
       |                                                             ^
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yi Tang <yi.tang.uk@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "yi.tang.uk@me.com")
as necessary.
Running massageExamples to create ‘orgR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/Rtmp975nHs/file5c9a451aa5e91', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/Rtmp975nHs/file5c9a451aa5e91/ToISOdate.R': No such file or directory
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Duncan Murdoch <murdoch.duncan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Murdoch",
                    role = c("aut", "cre"),
                    email = "murdoch.duncan@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘voxdim.Rd’, ‘voxres.Rd’, ‘write_afni-methods.Rd’, ‘write_anlz.Rd’, ‘write_nifti.Rd’, ‘xyzt_units-methods.Rd’, ‘zero_trans.Rd’
Running examples in ‘oro.nifti-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: writeAFNI-methods
> ### Title: writeAFNI
> ### Aliases: writeAFNI-methods writeAFNI writeAFNI,afni-method
> ###   writeAFNI,ANY-method
> ### Keywords: file methods
> 
> ### ** Examples
> 
> 
> ## Taken from the AFNI Matlab Library
> ## http://afni.nimh.nih.gov/pub/dist/data/afni_matlab_data.tgz
> afni.path <- system.file("afni", package="oro.nifti")
> orig <- readAFNI(file.path(afni.path, "ARzs_CW_avvr.DEL+orig"))
> fname = file.path(tempdir(), "test-afni-image")
> writeAFNI(orig, fname, verbose=TRUE)
Error in file(paste(fname, ".BRIK", sep = ""), "wb") : 
  cannot open the connection
Calls: writeAFNI -> writeAFNI -> .local -> file
Execution halted
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brandon",
                    family = "Whitcher",
                    role = c("aut", "cre"),
                    email = "bwhitcher@gmail.com")
as necessary.
checkRd: (-1) hillEquation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:81-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:84-85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:86-87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:91-93: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpYPVovT/Rd2pdf54cea55e223cc/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpNzqOjF/ltx68686517eff31/ortho_optim.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Andrew Redd <andrew.redd@hsc.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Redd",
                    role = c("aut", "cre"),
                    email = "andrew.redd@hsc.utah.edu")
as necessary.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Novomestky",
                    role = c("aut", "cre"),
                    email = "fnovomes@poly.edu")
as necessary.
checkRd: (-1) polynomial.derivatives.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fitS4.R’ ‘helpers.R’
checkRd: (-1) oscar.Rd:44: Lost braces; missing escapes or markup?
    44 | \item{print}{Level of verbosity in Fortran (may not be visible on all terminals); should be an integer between {range, range}, Default: 3}
       |                                                                                                                ^
checkRd: (-1) oscar.control.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{start}{Starting point generation method, see vignettes for details; should be an integer between {range,range}, Default: 2}
       |                                                                                                        ^
Running massageExamples to create ‘oscar-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp8Q0h8g/file5f8713a793c3e/oscar.control.R': No space left on device
Execution halted
 NONE
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Maintainer: ‘Olga Savchuk <olga.y.savchuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olga",
                    family = "Savchuk",
                    role = c("aut", "cre"),
                    email = "olga.y.savchuk@gmail.com")
as necessary.

The Description field contains
  functions, <arXiv:1703.05157>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mc2d’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpREHjtF/file712262aec3c95': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpREHjtF/file712262aec3c95': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sebastien Haneuse <shaneuse@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastien",
                      family = "Haneuse",
                      role = c("aut", "cre"),
                      email = "shaneuse@hsph.harvard.edu"),
               person(given = "Takumi",
                      family = "Saegusa",
                      role = "aut"),
               person(given = "Nilanjan",
                      family = "Chaterjee",
                      role = "aut"),
               person(given = "Norman",
                      family = "Breslow",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xavier Domingo-Almenara <xavier.domingo@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xavier",
                    family = "Domingo-Almenara",
                    role = c("aut", "cre"),
                    email = "xavier.domingo@urv.cat")
as necessary.
Maintainer: ‘Aaron Wolen <aaron@wolen.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpRmznbT/libloc_196_7534b56305e94d16.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Running ‘testthat.R’ [15s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(osmextract)
  Data (c) OpenStreetMap contributors, ODbL 1.0. https://www.openstreetmap.org/copyright.
  Check the package website, https://docs.ropensci.org/osmextract/, for more details.
  > 
  > test_check("osmextract")
  Saving _problems/test-find-13.R
  [ FAIL 1 | WARN 3 | SKIP 13 | PASS 130 ]
  
  ══ Skipped tests (13) ══════════════════════════════════════════════════════════
  • On CRAN (13): 'test-download.R:2:3', 'test-find.R:59:3',
    'test-get-keys.R:84:1', 'test-get.R:2:3', 'test-get.R:21:3',
    'test-get.R:48:3', 'test-match.R:86:3', 'test-match.R:184:3',
    'test-match.R:195:3', 'test-match.R:211:3', 'test-read-poly.R:117:3',
    'test-read.R:32:3', 'test-update.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-find.R:10:3'): oe_find: simplest example works ─────────────────
  Error in `sf::gdal_utils(util = "vectortranslate", source = normalizePath(file_path), destination = normalizePath(gpkg_file_path, mustWork = FALSE), options = vectortranslate_options, quiet = quiet)`: gdal_utils vectortranslate: an error occured
  Backtrace:
      ▆
   1. └─osmextract::oe_vectortranslate(file_path = its_pbf, quiet = TRUE) at test-find.R:10:3
   2.   └─sf::gdal_utils(...)
  
  [ FAIL 1 | WARN 3 | SKIP 13 | PASS 130 ]
  Error:
  ! Test failures.
  Warning message:
  In dir.create(path, recursive = TRUE) :
    cannot create dir '/tmp/Rtmp0JOF3W/file604de23ee328a', reason 'No space left on device'
  Execution halted
Maintainer: ‘Xiaoyao Yin <yinxy1992@sina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaoyao",
                    family = "Yin",
                    role = c("aut", "cre"),
                    email = "yinxy1992@sina.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Adrian Staempfli <adrian.staempfli@ost.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Staempfli",
                      role = c("aut", "cre"),
                      email = "adrian.staempfli@ost.ch"),
               person(given = "Christoph",
                      family = "Strauss",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction.Rmd’ using rmarkdown

Quitting from Introduction.Rmd:119-124 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'netmeta'
---
Backtrace:
    ▆
 1. └─base::library(netmeta)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
there is no package called 'netmeta'
--- failed re-building ‘Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘hypervolume’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpcH5exK/file5f8a2556ccbd8/geneOntologyQuery.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Zardad Khan <zardadkhan@awkum.edu.pk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zardad",
                      family = "Khan",
                      role = c("aut", "cre"),
                      email = "zardadkhan@awkum.edu.pk"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Osama",
                      family = "Mahmoud",
                      role = "aut"),
               person(given = "Werner",
                      family = "Adler",
                      role = "aut"),
               person(family = "Miftahuddin",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcus Young <M.A.Young@soton.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mice', 'missMDA', 'FactoMineR', 'StatMatch'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pietro Coretto <pcoretto@unisa.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Junwen Xia <xiajunwen@ruc.edu.cn>’

The Description field contains
  available (Xia, J., Zhan, Z., Zhang, J. (2022) <arXiv:2210.05538>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandra",
                    family = "Linz",
                    role = c("aut", "cre"),
                    email = "amlinz16@gmail.com")
as necessary.
Maintainer: ‘Finlay Campbell <finlaycampbell93@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘zika_girardot_2015.Rd’:
    https://doi.org/10.2807/1560-7917.ES.2016.21.28.30283
Maintainer: ‘Rafael Pilliard Hellwig <rafael.taph@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) fmat.Rd:15: Lost braces; missing escapes or markup?
    15 | \item outcome: codes {I, P, R, NC, O, UH, UO, eUH, eUO, NE}
       |                      ^
checkRd: (-1) fmat.Rd:24: Lost braces; missing escapes or markup?
    24 | The input parameters given by the user are {I, P, R, NC, O, UH, UO} and
       |                                            ^
checkRd: (-1) fmat.Rd:25: Lost braces; missing escapes or markup?
    25 | the parameter 'e'. The parameter e is multiplied by {UH, UO} internally so as to
       |                                                     ^
checkRd: (-1) fmat.Rd:26: Lost braces; missing escapes or markup?
    26 | produce {eUH, eUO}.
       |         ^
checkRd: (-1) middleearth.Rd:14: Lost braces; missing escapes or markup?
    14 | \item \strong{code:} one of the outcome codes {I, P, R, NC, O, UH, UO, UH, UO, NE}
       |                                               ^
Running massageExamples to create ‘outcomerate-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpyq2M8X/file5f8dc39d76d6b/eligibility_rate.R': No space left on device
Execution halted
 NONE
Packages required but not available: 'airt', 'EstCRM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexCWM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andres Missiego Manjon <andres.missiego@edu.uah.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andres", "Missiego"),
                      family = "Manjon",
                      role = c("aut", "cre"),
                      email = "andres.missiego@edu.uah.es"),
               person(given = c("Juan", "Jose", "Cuadrado"),
                      family = "Gallego",
                      role = "aut"))
as necessary.
Maintainer: ‘Antony Unwin <unwin@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antony",
                    family = "Unwin",
                    role = c("aut", "cre"),
                    email = "unwin@math.uni-augsburg.de")
as necessary.
Packages required but not available: 'HDoutliers', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukasz",
                    family = "Komsta",
                    role = c("aut", "cre"),
                    email = "lukasz.komsta@umlub.pl")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpwr9MbS/ltx63e5124a6e969/predict.outliertree.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rstanarm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
                      email = "jmbeauli@uark.edu"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpcaVyOa/Rf60ef2229472d9': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘dbplyr’

Package suggested but not available for checking: ‘duckdbfs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cosima Meyer <cosima.meyer@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp3JwDqW/Rf60e4d34b260d6': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘owid.R’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ows4R.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘oxcAAR-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpgcp8wm/file6405215012faf/get_tidy_oxcalresult.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Kevin", "C."),
                      family = "Johnson",
                      role = "aut"))
as necessary.
Packages required but not available: 'flexsurv', 'randomForestSRC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpfT7vgl/file687e1652b77c3/check_codetags.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Marion Brandolini-Bunlon <marion.brandolini-bunlon@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marion",
                      family = "Brandolini-Bunlon",
                      role = c("aut", "cre"),
                      email = "marion.brandolini-bunlon@inra.fr"),
               person(given = "Stephanie",
                      family = "Bougeard",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Petera",
                      role = "aut"),
               person(given = "Estelle",
                      family = "Pujos-Guillot",
                      role = "aut"))
as necessary.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmp9ABrJm/Rd2pdf6259f6a91cd1a/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pacta.loanbook.Rcheck/00install.out’ for details.
Package required but not available: ‘ggalluvial’

Package suggested but not available for checking: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tmap’

Package suggested but not available for checking: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GenomicAlignments’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GGally', 'caret'

Package suggested but not available for checking: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marina Evangelou <m.evangelou@ic.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marina",
                    family = "Evangelou",
                    role = c("aut", "cre"),
                    email = "m.evangelou@ic.ac.uk")
as necessary.
Maintainer: ‘Steve Haroz <painbow@steveharoz.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steve",
                    family = "Haroz",
                    role = c("aut", "cre"),
                    email = "painbow@steveharoz.com")
as necessary.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Stephane Champely <champely@univ-lyon1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephane",
                    family = "Champely",
                    role = c("aut", "cre"),
                    email = "champely@univ-lyon1.fr")
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘pairsD3Output.Rd’, ‘renderPairsD3.Rd’, ‘savePairs.Rd’
Maintainer: ‘Joerg-Henrik Heine <jhheine@googlemail.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpGJGrnL/Rf646b04649172c': No space left on device
Package required but not available: ‘spocc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) MICS2014Ch.Rd:296: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Ch.Rd:297: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:214: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:215: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:109: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:110: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:336: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:337: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018bh.Rd:88: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018bh.Rd:89: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018fs.Rd:308: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018fs.Rd:309: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:362: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:363: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:70: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:243: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:244: Lost braces in \enumerate; meant \describe ?
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpGLGXPd/Rf6b43765458a46': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Warning: pkg_sysreqs.Rd:50: problem copying /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/bin/px to /tmp/RtmpXnaR8P/file6cd5f3590cc90/processx/bin/px: No space left on device
Warning: pkg_sysreqs.Rd:50: problem copying /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/bin/supervisor to /tmp/RtmpXnaR8P/file6cd5f3590cc90/processx/bin/supervisor: No space left on device
Warning: pkg_sysreqs.Rd:50: problem copying /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/CODE_OF_CONDUCT.md to /tmp/RtmpXnaR8P/file6cd5f3590cc90/processx/CODE_OF_CONDUCT.md: No space left on device
Warning: pkg_sysreqs.Rd:50: problem creating directory /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/R: No space left on device
Warning: pkg_sysreqs.Rd:50: problem copying /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/libs/processx.so to /tmp/RtmpXnaR8P/file6cd5f3590cc90/processx/libs/processx.so: No space left on device
Warning: pkg_sysreqs.Rd:50: problem copying /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/libs/client.so to /tmp/RtmpXnaR8P/file6cd5f3590cc90/processx/libs/client.so: No space left on device
Warning: pkg_sysreqs.Rd:50: problem copying /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/libs/symbols.rds to /tmp/RtmpXnaR8P/file6cd5f3590cc90/processx/libs/symbols.rds: No space left on device
Warning: pkg_sysreqs.Rd:50: problem copying /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pak/library/processx/NEWS.md to /tmp/RtmpXnaR8P/file6cd5f3590cc90/processx/NEWS.md: No space left on device
Error: pkg_sysreqs.Rd:50: processing render-stage \Sexpr code failed:
Error in gzfile(file, "rb"): Cannot load processx from the private library: cannot open the connection
Execution halted
Running ‘testthat.R’ [38s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(pakret)
  > 
  > test_check("pakret")
  Saving _problems/test-pkrt-45.R
  [ FAIL 1 | WARN 0 | SKIP 9 | PASS 35 ]
  
  ══ Skipped tests (9) ═══════════════════════════════════════════════════════════
  • On CRAN (9): 'test-onload.R:1:1', 'test-pkrt-list.R:1:1',
    'test-pkrt-list.R:32:1', 'test-pkrt-list.R:52:1', 'test-pkrt-set.R:72:1',
    'test-pkrt.R:1:1', 'test-pkrt.R:7:1', 'test-pkrt.R:103:1',
    'test-pkrt.R:144:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-pkrt.R:45:3'): citing the same package again doesn't add a new bib entry ──
  Error in `"file(con, \"w\")"`: cannot open the connection
  Backtrace:
      ▆
   1. └─pakret:::local_files(...) at test-pkrt.R:45:3
   2.   └─pakret:::with_pakret_error(callr::r(render, list(input = rmd)))
   3.     └─base::tryCatch(expr, error = function(e) stop(e$parent))
   4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   6.           └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 0 | SKIP 9 | PASS 35 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘assertr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘paleobuddy-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpjPQDV7/file6cb5d2029f7d4/bin.occurrences.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘Paleobiodiversity_analysis.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpuvI6YR/Rf6f1cc16ac773f': No space left on device

Quitting from Paleobiodiversity_analysis.Rmd:93-95 [diversityviol]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Paleobiodiversity_analysis.Rmd:93-95 [diversityviol]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Paleobiodiversity_analysis.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Paleobiodiversity_analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘Paleobiodiversity_analysis.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "timcdlucas@gmail.com"),
               person(given = "Anjali",
                      family = "Goswami",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpVnW2J9/file9ddf05c5dc30b/paleopop_simulator.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘David W. Bapst <dwbapst@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "W."),
                      family = "Bapst",
                      role = c("aut", "cre"),
                      email = "dwbapst@gmail.com"),
               person(given = c("Peter", "J."),
                      family = "Wagner",
                      role = "aut"))
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [10s/12s] OK
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiKDNnK/ltx6b272dd33405/autoaxis.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Lucas",
                    role = c("aut", "cre"),
                    email = "timcdlucas@gmail.com")
as necessary.
Maintainer: ‘Allison Horst <ahorst@ucsb.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Heidi Seibold <heidi@seibold.co>’

The Description field contains
  found in Seibold, Hothorn, Zeileis (2016) <arXiv:1612.07498>. The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp4lWuBC/file6ca0b5a4f0937/niccoli.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘pec’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PAMpal.Rcheck/00install.out’ for details.
Running massageExamples to create ‘pam-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpd3HfPE/file6c9b155a1691/read_dual_pam_single_channel_p700_data.R': No space left on device
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PAMscapes.Rcheck/00install.out’ for details.
Package required but not available: ‘smacof’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joseph G Kreke <jkreke2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "G"),
                      family = "Kreke",
                      role = c("aut", "cre"),
                      email = "jkreke2@gmail.com"),
               person(given = "PhD;",
                      family = "Harris",
                      role = "aut"),
               person(given = c("Inc.", "Sangeet"),
                      family = "Khemlani",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research", "Laboratory.", "Greg"),
                      family = "Trafton",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research"),
                      family = "Laboratory.",
                      role = "aut"))
as necessary.
Packages required but not available: 'tourr', 'detourr', 'plotly'

Package suggested but not available for checking: ‘VIM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jing Peng <jing.peng@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jing",
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "jing.peng@uconn.edu")
as necessary.
cannot open the connection
problem found in ‘describe_incomplete.Rd’
Conversion of ‘README.md’ failed:
pandoc: /tmp/RtmpaAWDqz/pandoc69b4f5d2ec46e.html: withFile: resource exhausted (No space left on device)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception
Running examples in ‘panelPomp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: specific<-
> ### Title: Set unit-specific parameters of a panelPomp object
> ### Aliases: specific<-
> ### Keywords: internal
> 
> ### ** Examples
> 
> # set parameters in list form
> prw <- panelRandomWalk(U = 4)
Warning in system2(command = R.home("bin/R"), args = c("CMD", "SHLIB", "-c",  :
  running command 'PKG_CPPFLAGS="-I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pomp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/panelPomp.Rcheck'" '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R' CMD SHLIB -c -o /tmp/RtmpqjsRFA/464925/pomp_baf7d8be3b2559cae8aea905af1cd7ea.so /tmp/RtmpqjsRFA/464925/pomp_baf7d8be3b2559cae8aea905af1cd7ea.c 2>&1' had status 1
Error: error in building shared-object library from C snippets: in ‘Cbuilder’: compilation error: cannot compile shared-object library ‘/tmp/RtmpqjsRFA/464925/pomp_baf7d8be3b2559cae8aea905af1cd7ea.so’: status = 1
compiler messages:
using C compiler: ‘gcc-16 (Debian 16.1.0-1) 16.1.0’
make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/panelPomp.Rcheck'
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pomp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/panelPomp.Rcheck'  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c /tmp/RtmpqjsRFA/464925/pomp_baf7d8be3b2559cae8aea905af1cd7ea.c -o /tmp/RtmpqjsRFA/464925/pomp_baf7d8be3b2559cae8aea905af1cd7ea.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpqjsRFA/464925/pomp_baf7d8be3b2559cae8aea905af1cd7ea.so /tmp/Rt
Execution halted
Package required but not available: ‘jtools’

Packages suggested but not available for checking:
  'AER', 'brms', 'broom.mixed', 'car', 'geepack', 'skimr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘xtmispanel.Rd’, ‘xtpretest.Rd’, ‘xtqsh.Rd’
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'Hmisc', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Maintainer: ‘Cathrine Ulla Jensen <cuj@ifro.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toke", "Emil"),
                      family = "Panduro",
                      role = "aut",
                      email = "tepp@ifro.ku.dk"),
               person(given = c("Cathrine", "Ulla"),
                      family = "Jensen",
                      role = c("aut", "cre"),
                      email = "cuj@ifro.ku.dk"))
as necessary.
checkRd: (-1) hvidovre.Rd:11: Lost braces
    11 |     \item{\code{roof_tile}}{a numeric vector, roof_tile}{dummy, roof made out of tiles =1}
       |                                                         ^
checkRd: (-1) hvidovre.Rd:25: Lost braces
    25 |     \item{\code{railways}}{a numeric vector, railways}{distance to nearest railway in meters}
       |                                                       ^
checkRd: (-1) hvidovre.Rd:26: Lost braces
    26 |     \item{\code{nature_SLD}}{a numeric vector, nature_SLD}{distance to nearest nature area in meters}
       |                                                           ^
Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "Joseph", "L."),
                      family = "Schafer",
                      role = "aut"),
               person(given = c("Jing", "hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [3s/5s] OK
Maintainer: ‘Frederik Aust <frederik.aust@uni-koeln.de>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘parabar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: peek
> ### Title: Inspect a Backend
> ### Aliases: peek
> 
> ### ** Examples
> 
> # Create an asynchronous backend.
> backend <- start_backend(cores = 2, cluster_type = "psock", backend_type = "async")
> 
> # Check that the backend is active.
> backend$active
[1] TRUE
> 
> # Check if there is anything on the backend.
> peek(backend)
[[1]]
character(0)

[[2]]
character(0)

> 
> # Create a dummy variable.
> name <- "parabar"
> 
> # Export the `name` variable in the current environment to the backend.
> export(backend, "name", environment())
> 
> # Remove the dummy variable from the current environment.
> rm(name)
> 
> # Check the backend to see that the variable has been exported.
> peek(backend)
Error: 
! in callr subprocess.
Caused by error in `mycall(sym_seterrf, as.character(path)[1])`:
! Cannot open new stderr file `/tmp/Rtmp1suXsj/callr-rs-stderr-71b6e5d5192e8` (system error 28, No space left on device) @client.c:240 (processx_set_stderr_to_file)
---
Backtrace:
1. parabar::peek(backend)
2. backend$peek()
3. private$.peek()
4. private$.cluster$run(function() { …
5. callr:::rs_run(self, private, func, args, package)
6. callr:::throw(res$error)
---
Subprocess backtrace:
. 
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
ProgressTrackingContext 0.73   0.25   5.228
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking:
  'TreeSummarizedExperiment', 'NPLStoolbox'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Erin Conlon <econlon@umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Miroshnikov",
                      role = "aut"),
               person(given = "Erin",
                      family = "Conlon",
                      role = c("aut", "cre"),
                      email = "econlon@umass.edu"))
as necessary.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Package required but not available: ‘rstatix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘run-all.R’ [20s/13s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  > library(BBmisc)
  
  Attaching package: 'BBmisc'
  
  The following object is masked from 'package:base':
  
      isFALSE
  
  > library(ParamHelpers)
  > 
  > test_check("ParamHelpers")
  Starting 2 test processes.
  > test_plotEAF.R: Loading required package: eaf
  > test_plotYTrace.R: Loading required package: plyr
  Saving _problems/test_renderOptPathPlot-20.R
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 1042 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test_convertParamSetToIrace.R:2:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_renderOptPathPlot.R:20:3'): renderOptPathPlot ──────────────────
  Error in `requirePackages(c("GGally", "ggplot2"), why = "renderOptPathPlot", default.method = "load")`: For renderOptPathPlot please install the following packages: GGally
  Backtrace:
      ▆
   1. └─ParamHelpers::renderOptPathPlot(op0, iter = 0, alpha = FALSE) at test_renderOptPathPlot.R:20:3
   2.   └─BBmisc::requirePackages(...)
   3.     └─BBmisc::stopf(...)
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 1042 ]
  Error:
  ! Test failures.
  Execution halted
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘easyalluvial’

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) returns.Rd:21: Lost braces; missing escapes or markup?
    21 |   \item{...}{Other options including {type} which refers to the
       |                                      ^
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"),
               person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'plotly', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) PPS.fit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forbes400.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forbes400.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:11: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘leafsync’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexios Galanos <alexios@4dscape.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Marcela Nunez Lemus <marcela.nunez.lemus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marcela", "Nunez"),
                      family = "Lemus",
                      role = c("aut", "cre"),
                      email = "marcela.nunez.lemus@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Larissa", "Avila"),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H"),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Running examples in ‘PartCensReg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Cens.SMN.PCR
> ### Title: Estimation and diagnostics for partially linear censored
> ###   regression models
> ### Aliases: Cens.SMN.PCR
> ### Keywords: package censored censoring diagnostic partial partially
> 
> ### ** Examples
> 
> dtawage = get(data(PSID1976,package = "AER"))
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘AER’
Calls: get -> data -> find.package
Execution halted
Maintainer: ‘Annette Molinaro <annette.molinaro@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annette",
                      family = "Molinaro",
                      role = c("aut", "cre"),
                      email = "annette.molinaro@ucsf.edu"),
               person(given = "Adam",
                      family = "Olshen",
                      role = "aut",
                      email = "olshena@biostat.ucsf.edu"),
               person(given = "Karen",
                      family = "Lostritto",
                      role = "aut",
                      email = "karen.lostritto@yale.edu"),
               person(given = "Gregory",
                      family = "Ryslik",
                      role = "aut",
                      email = "gregory.ryslik@yale.edu"),
               person(given = "Steve",
                      family = "Weston",
                      role = "aut",
                      email = "stephen.weston@yale.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ben Derrick <ben.derrick@uwe.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Derrick",
                    role = c("aut", "cre"),
                    email = "ben.derrick@uwe.ac.uk")
as necessary.
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DescTools', 'flexsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Adam Clark <adam.tclark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "adam.tclark@gmail.com")
as necessary.
cannot open the connection
problem found in ‘variationOfInformation.Rd’
Maintainer: ‘David Weisman <David.Weisman@acm.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Weisman",
                      role = c("aut", "cre"),
                      email = "david.weisman@acm.org"),
               person(given = "Dan",
                      family = "Simovici",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘regtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Doug Kelkhoff <doug.kelkhoff@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Errors in running code in vignettes:
when running code in ‘partykit.Rnw’
  ...
Fatal error: cannot create 'R_TempDir'

... incomplete output.  Crash?

  ‘partykit.Rnw’ using ‘UTF-8’... failed to complete the test
Note: skipping ‘mob.Rnw’ due to unavailable dependencies: 'AER'
Maintainer: ‘Alban Sagouis <sagouis@pm.me>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Maintainer: ‘Zhiqiu Hu <zhiqiu.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhiqiu", "Hu;", "Shizhong", "Xu;", "Zhiquan", "Wang;", "Rongcai"),
                      family = "Yang",
                      role = "aut"),
               person(given = "Zhiqiu",
                      family = "Hu",
                      role = "cre",
                      email = "zhiqiu.hu@gmail.com"))
as necessary.
checkRd: (-1) PAS-package.Rd:30: Lost braces
    30 |     {\code{bin model}}{\cr Zhiqiu Hu, Zhiquan Wang, and Shizhong Xu (2012) An infinitesimal model for quantitative trait genomic value prediction. PloS ONE 7: e41336.}
       |                       ^
Maintainer: ‘Marco Chak Yan YU <marcocyyu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marco", "Chak", "Yan"),
                    family = "YU",
                    role = c("aut", "cre"),
                    email = "marcocyyu@gmail.com")
as necessary.
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Emmanuel Charpentier <emm.charpentier@free.fr>’

Found the following (possibly) invalid file URI:
  URI: emm.charpentier@free.fr
    From: man/patchSynctex-package.Rd
Packages required but not available: 'Hmisc', 'DiagrammeR', 'metan'

Package suggested but not available for checking: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aidan Frederick <Aidan.Frederick@sdstate.edu>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available:
  'AnnotationDbi', 'ggraph', 'ggkegg', 'msigdbr'

Package suggested but not available for checking: ‘org.Hs.eg.db’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven Andrew Culpepper <sculpepp@illinois.edu>’

Reading Rd files failed with message:
  cannot open the connection

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘RGraphSpace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'AnnotationDbi', 'clusterProfiler'

Packages suggested but not available for checking:
  'GO.db', 'org.Hs.eg.db', 'reactome.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'Andromeda', 'Cyclops', 'DatabaseConnector', 'FeatureExtraction'

Packages suggested but not available for checking:
  'Eunomia', 'IterativeHardThresholding', 'OhdsiShinyAppBuilder',
  'ResultModelManager', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘omopgenerics’

Packages suggested but not available for checking:
  'CDMConnector', 'CodelistGenerator', 'CohortConstructor', 'dbplyr',
  'Hmisc', 'omock'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘clinUtils’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Seong Hyun Hwang <krshh1412@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seong", "Hyun"),
                      family = "Hwang",
                      role = c("aut", "cre"),
                      email = "krshh1412@gmail.com"),
               person(given = c("Rachel", "Myoung"),
                      family = "Moon",
                      role = "aut"))
as necessary.
Package required but not available: ‘geomorph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘WGCNA’

Package suggested but not available for checking: ‘biomaRt’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..............................................................................Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6SycNH/filec3625379ec042': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp6SycNH/filec3625379ec042': No such file or directory
Error in file(con, "r") : cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘ec2_modify_instance_network_performance_options.Rd’, ‘ecs_create_task_set.Rd’, ‘ecs_delete_account_setting.Rd’, ‘ecs_delete_attributes.Rd’, ‘ecs_delete_capacity_provider.Rd’, ‘ecs_delete_cluster.Rd’, ‘ecs_delete_daemon.Rd’, ‘eks_associate_encryption_config.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .....................................................................................................................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmYvmOz/file977866b6232f6': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpmYvmOz/file977866b6232f6': No such file or directory
Error in file(con, "r") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp2QzdlD/ltx8a8a259da427f/connect_create_hours_of_operation_override.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
cannot open the connection
problem found in ‘docdb_reboot_db_instance.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX .................................................................................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmptsVoYL/file8aa272bc1e328': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmptsVoYL/file8aa272bc1e328': No such file or directory
Error in file(con, "r") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX ............................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSf7YL3/ltx99435c670257/bedrockagentcorecontrol_delete_configuration_bundle.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘controltower_list_enabled_controls.Rd’, ‘controltower_list_landing_zone_operations.Rd’, ‘controltower_list_landing_zones.Rd’, ‘controltower_list_tags_for_resource.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6mwMcK/file8422e5688853/ram.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...........................................................................Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpy4oFy8/ltx98f05171b6f99/iam_get_role.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘recyclebin_delete_rule.Rd’, ‘recyclebin_get_rule.Rd’, ‘recyclebin_list_rules.Rd’, ‘recyclebin_list_tags_for_resource.Rd’, ‘recyclebin_lock_rule.Rd’, ‘recyclebin_tag_resource.Rd’
Rd conversion errors:
Converting parsed Rd's to LaTeX ...................................................................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpH7tN97/ltx884bf263ad410/storagegateway_create_snapshot_from_volume_recovery_point.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Hoffmann",
                      role = c("aut", "cre"),
                      email = "tjhoffm@gmail.com"),
               person(given = c("with", "contributions", "from", "Christoph"),
                      family = "Lange",
                      role = "aut",
                      email = "clange@hsph.harvard.edu"))
as necessary.
Package required but not available: ‘ibd’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp7OUfyl/ltx8da0d1f67f080/11_d_pbd_opt.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Rampal", "S."),
                    family = "Etienne",
                    role = c("aut", "cre"),
                    email = "r.s.etienne@rug.nl")
as necessary.
checkRd: (-1) pbd_loglik.Rd:31: Lost braces
    31 |     \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:32: Lost braces
    32 |     \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:33: Lost braces
    33 |     \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:34: Lost braces
    34 |     \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:35: Lost braces
    35 |     \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:36: Lost braces
    36 |     \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
       |                    ^
checkRd: (-1) pbd_loglik.Rd:37: Lost braces
    37 |     \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}  
       |                    ^
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaodong",
                      family = "Luo",
                      role = "aut"),
               person(given = "Bo",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu",
                      comment = c(ORCID = "0000-0002-5893-0169")))
as necessary.
Maintainer: ‘Brenton Kenkel <brenton.kenkel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fortran", "code", "by", "Alan", "Genz.", "R", "code", "by", "Brenton"),
                      family = "Kenkel",
                      role = "aut"),
               person(given = c("based", "on", "Adelchi", "Azzalini's", "'mnormt'"),
                      family = "package.",
                      role = "aut"),
               person(given = "Brenton",
                      family = "Kenkel",
                      role = "cre",
                      email = "brenton.kenkel@gmail.com"))
as necessary.
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kevin kuang <kvn.kuang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Kuang",
                      role = c("aut", "cre"),
                      email = "kvn.kuang@mail.utoronto.ca",
                      comment = "aut"),
               person(given = "Quyu",
                      family = "Kong",
                      role = "aut",
                      comment = "ctb"),
               person(given = "Francesco",
                      family = "Napolitano",
                      role = "aut",
                      comment = "ctb"))
as necessary.
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
Maintainer: ‘Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>’

Found the following (possibly) invalid file URIs:
  URI: admb-project.org
    From: inst/doc/admb-re.pdf
  URI: lib.stat.cmu.edu/.pdf
    From: inst/doc/admb-re.pdf
':::' calls which should be '::':
  ‘PBSmodelling:::.findSquare’ ‘PBSmodelling:::.getHiddenEnv’
  ‘PBSmodelling:::.makeCleanVec’ ‘PBSmodelling:::.readList.P’
  ‘PBSmodelling:::.trimWhiteSpace’
  See the note in ?`:::` about the use of this operator.
Maintainer: ‘Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>’

Found the following (possibly) invalid URLs:
  URL: 
    From: inst/doc/PBSmapping-UG.pdf
    Message: Empty URL
Maintainer: ‘swang1 <swang1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuangcai",
                      family = "Wang",
                      role = "aut"),
               person(family = "swang1",
                      role = "cre",
                      email = "swang1@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de",
                    comment = c(ORCID = "0000-0002-8226-3132"))
as necessary.
Maintainer: ‘Manuela Ott <manuela.c.ott@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘twoby2Calibrate.Rd’:
    https://doi.org/10.1080/01621459.2018.1469992
    https://doi.org/10.1111/insr.12307
Package required but not available: ‘exact2x2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pedro Fonseca <pedro.teles.fonseca@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Derek W. Brown <derek9@gwmail.gwu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Chavent <Marie.Chavent@u-bordeaux.fr>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘MFAmix.Rd’:
    \keyword{multivariate, mixed type data, data struc [TRUNCATED]
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp22kkmE/file9473c21929d4/Idom.num1CSstd.tri.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpTPcecL/file823ff3aba85c/IedgeASbasic.tri.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpIvtt6N/Rf9ede1292ec459': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Yi-Hui Zhou <yihui_zhou@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi-Hui",
                    family = "Zhou",
                    role = c("aut", "cre"),
                    email = "yihui_zhou@ncsu.edu")
as necessary.
Maintainer: ‘Pariya Behrouzi <pariya.behrouzi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Willem",
                      family = "Kruijer",
                      role = "aut"),
               person(given = "Pariya",
                      family = "Behrouzi",
                      role = c("aut", "cre"),
                      email = "pariya.behrouzi@gmail.com"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("B", "N"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Tay",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stanford.edu"))
as necessary.

The Description field contains
  regression' <arXiv:1810.04651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrew Ying <aying9339@gmail.com>’

The Description field contains
  arXiv e-prints, arXiv-2009 <arXiv:2009.10982>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Krzysztof Bartoszek <krzbar@protonmail.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = c("aut", "cre"),
                      email = "krzbar@protonmail.ch"),
               person(given = "Pietro",
                      family = "Lio'",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) PCM_ABC.Rd:106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:108-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:114: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:117: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:205-207: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:208-211: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:212-216: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:221-224: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:225-228: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:229-231: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:232: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:233: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:234: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:235: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:236: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:237: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:238: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:239: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:240: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:58-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:67: Lost braces in \itemize; meant \describe ?
Maintainer: ‘S. Varet <suzanne.varet@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "S.",
                    family = "Varet",
                    role = c("aut", "cre"),
                    email = "suzanne.varet@universite-paris-saclay.fr")
as necessary.
Maintainer: ‘Kristof Meers <kristof.meers+cran@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marlies",
                      family = "Vervloet",
                      role = c("aut", "cre")),
               person(given = "Henk",
                      family = "Kiers",
                      role = "aut"),
               person(given = "Eva",
                      family = "Ceulemans",
                      role = "ctb"),
               person(given = "Kristof",
                      family = "Meers",
                      role = "cre",
                      email = "kristof.meers+cran@kuleuven.be"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Lawrence G. Chillrud [aut, cre, cph] (<https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (<https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (<https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (<https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (<https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (<https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (00hj8s172)’
  Authors@R: ‘Lawrence G. Chillrud [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (ORCID: <https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (ORCID: <https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (ORCID: <https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (ORCID: <https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (ORCID: <https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (ROR: <https://ror.org/00hj8s172>)’
Running massageExamples to create ‘pcpr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpIXMMAv/file82512721b970d/get_pcp_defaults.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘pcp-applied.Rmd’ using rmarkdown

Quitting from pcp-applied.Rmd:27-71 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'GGally'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(GGally)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pcp-applied.Rmd' failed with diagnostics:
there is no package called 'GGally'
--- failed re-building ‘pcp-applied.Rmd’

--- re-building ‘pcp-quickstart.Rmd’ using rmarkdown
--- finished re-building ‘pcp-quickstart.Rmd’

--- re-building ‘theory-crash-course.Rmd’ using rmarkdown
--- finished re-building ‘theory-crash-course.Rmd’

SUMMARY: processing the following file failed:
  ‘pcp-applied.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘phylobase’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Delia Bailey <delia.bailey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Delia",
                      family = "Bailey",
                      role = c("aut", "cre"),
                      email = "delia.bailey@gmail.com"),
               person(given = c("Jonathan", "N."),
                      family = "Katz",
                      role = "aut",
                      email = "jkatz@caltech.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jason Wilson <jason.wilson@biola.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Wilson",
                    role = c("aut", "cre"),
                    email = "jason.wilson@biola.edu")
as necessary.
Maintainer: ‘Aleksei Krasikov <krasikov.as@phystech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aleksei",
                    family = "Krasikov",
                    role = c("aut", "cre"),
                    email = "krasikov.as@phystech.edu")
as necessary.
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking:
  'NST', 'phyloseqGraphTest', 'plotly', 'Hmisc', 'ggtree',
  'ggtreeExtra', 'ALDEx2', 'MetaNet', 'zetadiv', 'mediation'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘pcts-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpLZQxDO/file9312b37b69a89/dataFranses1996.R': No space left on device
Execution halted
 NONE
checkRd: (-1) pcvpcr.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
checkRd: (-1) pcvpls.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
Packages required but not available: 'FactoMineR', 'car'

Packages suggested but not available for checking:
  'brms', 'flexsurv', 'cmdstanr', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Andreas M. Brandmaier <brandmaier@mpib-berlin.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andreas", "M."),
                    family = "Brandmaier",
                    role = c("aut", "cre"),
                    email = "brandmaier@mpib-berlin.mpg.de")
as necessary.

Found the following (possibly) invalid file URI:
  URI: openclipart.org
    From: man/complex.shapes.Rd
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpKTQ1aJ/ltx8a59f6091cd5b/RegIneq.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Menardi Giovanna <menardi@stat.unipd.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Jenny Farmer <jfarmer@carolina.rr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jenny",
                      family = "Farmer",
                      role = c("aut", "cre"),
                      email = "jfarmer@carolina.rr.com"),
               person(given = "Donald",
                      family = "Jacobs",
                      role = "aut",
                      email = "djacobs1@uncc.ecu"))
as necessary.
Maintainer: ‘Jeffrey Wong <jeff.ct.wong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Wong",
                    role = c("aut", "cre"),
                    email = "jeff.ct.wong@gmail.com")
as necessary.
Maintainer: ‘J.F. Palomeque-Gonzalez <jfpalomeque.gonzalez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.F.",
                      family = "Palomeque-Gonzalez",
                      role = c("aut", "cre"),
                      email = "jfpalomeque.gonzalez@gmail.com"),
               person(given = "M.",
                      family = "San-Juan",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhenbang Wang <bruce1edward@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Cabrera",
                      role = "aut",
                      email = "xavier.cabrera@gmail.com"),
               person(given = "Fei",
                      family = "Wang",
                      role = "aut",
                      email = "cherry8177@gmail.com"),
               person(given = "Zhenbang",
                      family = "Wang",
                      role = "cre",
                      email = "bruce1edward@gmail.com"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZ65XpT/file882726e753117/enpoint.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘glmmTMB’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘monobin’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggpubr', 'frailtypack'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘pdxTrees-vignette.Rmd’ using rmarkdown

Quitting from pdxTrees-vignette.Rmd:160-170 [linear regression]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'moderndive'
---
Backtrace:
    ▆
 1. └─base::library(moderndive)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pdxTrees-vignette.Rmd' failed with diagnostics:
there is no package called 'moderndive'
--- failed re-building ‘pdxTrees-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘pdxTrees-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘stevemisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toby", "Dylan"),
                      family = "Hocking",
                      role = c("aut", "cre"),
                      email = "toby.hocking@r-project.org"),
               person(given = "Guillem",
                      family = "Rigaill",
                      role = "aut"))
as necessary.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Hughes",
                    role = c("aut", "cre"),
                    email = "drjphughesjr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juha Karvanen <juha.karvanen@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Juha",
                    family = "Karvanen",
                    role = c("aut", "cre"),
                    email = "juha.karvanen@iki.fi")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'caret', 'deaR', 'np', 'rminer', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'riskRegression'

Package suggested but not available for checking: ‘Hmisc’

Package which this enhances but not available for checking: ‘randomForestSRC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘pECV-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpdjDONg/file646d07aeec19e/pECV.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘Pedixplorer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘demo.Rmd’ using rmarkdown

Quitting from demo.Rmd:93-97 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'DiagrammeR'
---
Backtrace:
    ▆
 1. └─base::library(DiagrammeR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'demo.Rmd' failed with diagnostics:
there is no package called 'DiagrammeR'
--- failed re-building ‘demo.Rmd’

SUMMARY: processing the following file failed:
  ‘demo.Rmd’

Error: Vignette re-building failed.
Execution halted
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(pedmut)
  > 
  > test_check("pedmut")
  Saving _problems/test-mutationModel-7.R
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 70 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-mutationModel.R:7:3'): mutation models are validated ───────────
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─testthat::expect_silent(validateMutationModel(M)) at test-mutationModel.R:7:3
   2.   └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   3.     └─testthat (local) .capture(...)
   4.       └─withr::with_output_sink(...)
   5.         └─withr:::set_output_sink(file = new, append = append, split = split)
   6.           └─withr:::output_sink(file = file, append = append, split = split)
   7.             └─base::sink(file = file, append = append, type = "output", split = split)
   8.               └─base::file(file, if (append) "a" else "w")
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 70 ]
  Error:
  ! Test failures.
  Execution halted
checkRd: (-1) variogramGuess.Rd:94: Lost braces
    94 | Method \code{"b"} was proposed by \doi{10.1016/0098-3004(95)00095-X}{Jian et al. (1996)} and
       |                                                                     ^
checkRd: (-1) variogramGuess.Rd:98: Lost braces
    98 | \doi{10.1016/j.cageo.2008.10.011}{Hiemstra et al. (2009)}.
       |                                  ^
checkRd: (-1) variogramGuess.Rd:100: Lost braces
   100 | Method \code{"d"} was developed by \doi{10.1007/s11004-012-9434-1}{Desassis & Renard (2012)}.
       |                                                                   ^
Running examples in ‘pedometrics-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotESDA
> ### Title: Plots for exploratory spatial data analysis (ESDA)
> ### Aliases: plotESDA
> 
> ### ** Examples
> 
> if (all(require(sp), require(gstat))) {
+   data(meuse, package = "sp")
+   p <- plotESDA(z = meuse$zinc, lat = meuse$y, lon = meuse$x)
+ }
Loading required package: sp
Loading required package: gstat
Loading required namespace: car
Failed with error:  ‘there is no package called ‘car’’
Error in plotHD(z, HD = "over", stats = FALSE, asp = 1, xlab = "z", col = c("skyblue",  : 
  car package is missing
Calls: plotESDA -> plotHD
Execution halted
install log ‘’ does not exist
Maintainer: ‘Qingyang Zhang <qz008@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "qz008@uark.edu"),
               person(given = "Yanchuan",
                      family = "Li",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PEGroupTesting-package.Rd’:
    \keyword{Group testing, maximum likelihood estimat [TRUNCATED]
Encountered the following conversion/validation errors:
cannot open the connection
Maintainer: ‘Stéphane Guerrier <stef.guerrier@gmail.com>’

The Description field contains
  methods proposed in Guerrier et al. (2023) <arXiv:2012.10745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniele Cuntrera <daniele.cuntrera@unipa.it>’

The Description field contains
  Muggeo, V. M. (2022) <arXiv:2212.08582>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘penalizedclr.Rmd’ using rmarkdown

Quitting from penalizedclr.Rmd:60-63 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'penalizedclr.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘penalizedclr.Rmd’

SUMMARY: processing the following file failed:
  ‘penalizedclr.Rmd’

Error: Vignette re-building failed.
Execution halted
Running massageExamples to create ‘penalizedSVM-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpfdW9JS/file8a9151ffca2ad/plot.EPSGO.parms.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘riskRegression’

Package suggested but not available for checking: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Elena Geminiani <geminianielena@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘automatic-tuning-selection.Rmd’ using rmarkdown
--- finished re-building ‘automatic-tuning-selection.Rmd’

sh: 1: cannot create /tmp/RtmpX7MmHU/file917d75add8bfb: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpX7MmHU/file917d75add8bfb': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: <Anonymous> -> cat -> readLines -> file
Execution halted
Maintainer: ‘Yan Liu <yanliuresearch@gmail.com>’

The Description field contains
  (2019) <arXiv:1912.11703>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Maintainer: ‘Levi Waldron <lwaldron.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Levi",
                    family = "Waldron",
                    role = c("aut", "cre"),
                    email = "lwaldron.research@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6LVbTe/ltx8b0f334e271b7/prior_employment.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Package required but not available: ‘ARTool’

Packages suggested but not available for checking: 'factoextra', 'MKinfer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpVDcahR/ltxa9ffa6756bc07', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpVDcahR/ltxa9ffa6756bc07/apply_missingness.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jorge Cimentada <cimentadaj@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Packages required but not available: 'fda', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Julien Idé <julien.ide.fr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Idé",
                    role = c("aut", "cre"),
                    email = "julien.ide.fr@gmail.com")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marie-Pierre Sylvestre <marie-pierre.sylvestre@umontreal.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie-Pierre",
                      family = "Sylvestre",
                      role = c("aut", "cre"),
                      email = "marie-pierre.sylvestre@umontreal.ca"),
               person(given = "Thad",
                      family = "Edens",
                      role = "aut"),
               person(given = "Todd",
                      family = "MacKenzie",
                      role = "aut"),
               person(given = "Michal",
                      family = "Abrahamowicz",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Laura Vicente-Gonzalez <laura20vg@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Laura",
                      family = "Vicente-Gonzalez",
                      role = c("aut", "cre"),
                      email = "laura20vg@usal.es"),
               person(given = c("Jose", "Luis"),
                      family = "Vicente-Villardon",
                      role = "aut"))
as necessary.
Checking relative paths failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/permRand.Rcheck/00install.out’ for details.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Fay",
                      role = "aut"),
               person(given = c("Michael", "P."),
                      family = "Fay",
                      role = "cre",
                      email = "mfay@niaid.nih.gov"))
as necessary.
Maintainer: ‘Alfonso Benitez-Paez <alfbenpa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alfonso",
                    family = "Benitez-Paez",
                    role = c("aut", "cre"),
                    email = "alfbenpa@gmail.com")
as necessary.
Maintainer: ‘Osama Abdalla <osama.abdalla@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Osama",
                    family = "Abdalla",
                    role = c("aut", "cre"),
                    email = "osama.abdalla@mail.utoronto.ca")
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpHN1zDT/Rf8af667e24b8ed': No space left on device
Running examples in ‘permutes-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clusterperm.glmer
> ### Title: Cluster-based permutation tests for time series data, based on
> ###   generalized linear mixed-effects models or other 'buildmer' models.
> ###   This is an alias for 'clusterperm.lmer' provided for discoverability.
> ### Aliases: clusterperm.glmer
> 
> ### ** Examples
> 
> ## Don't show: 
> perms <- perm.glmer(Fz ~ Deviant*Session + (1|Subject),data=MMN[MMN$Time > 200 & MMN$Time < 205,],nperm=2,type='anova')
Loading required namespace: car
Failed with error:  ‘there is no package called ‘car’’
Error in pkgcheck(check) : 
  Please install the following missing package: car
Calls: perm.glmer ... eval -> <Anonymous> -> clusterperm.work -> pkgcheck
Execution halted
Maintainer: ‘Gabriel Kaiser <quantresearch.gk@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘perplexR-package.Rd’:
    \keyword{annotate;}
Package required but not available: ‘personalized’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/personalr.Rcheck/00install.out’ for details.
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Maintainer: ‘Kenneth B. Hoehn <perspectev@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  http://evolve.zoo.ox.ac.uk/Evolve/Perspectev.html.
Please enclose URLs in angle brackets (<...>).
Packages required but not available:
  'flexsurv', 'flexsurvcure', 'rms', 'sft', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘KM Gates <gateskm@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "KM",
                      family = "Gates",
                      role = c("aut", "cre"),
                      email = "gateskm@email.unc.edu"),
               person(given = "Zachary",
                      family = "Fisher",
                      role = "aut"),
               person(given = "Cara",
                      family = "Arizmendi",
                      role = "aut"))
as necessary.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Piotr Sobczyk <pj.sobczyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Sobczyk",
                      role = c("aut", "cre"),
                      email = "pj.sobczyk@gmail.com"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Malgorzata",
                      family = "Bogdan",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Washington Junger <wjunger@ims.uerj.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Washington",
                    family = "Junger",
                    role = c("aut", "cre"),
                    email = "wjunger@ims.uerj.br")
as necessary.
Fatal error: cannot create 'R_TempDir'
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘pgdraw-package.Rd’:
    \keyword{distribution,}
Maintainer: ‘Yang Feng <yangfengstat@gmail.com>’

The Description field contains
  projection as introduced in Fan, Feng and Xia (2019)<arXiv:1501.01617>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Gangcai Xie <gcxiester@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gangcai",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "gcxiester@gmail.com")
as necessary.
Packages required but not available: 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp2gVCMN/ltx946c215bbe76e/dropDATABASE.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available:
  'finalfit', 'Hmisc', 'VIM', 'mice', 'plotly', 'rcompanion'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Rui",
                      family = "Qin",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phantSEM.Rcheck/00install.out’ for details.
install log ‘’ does not exist
Package required but not available: ‘trialr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lu Zhang <luzhangstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "luzhangstat@gmail.com"),
               person(given = "Jun",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘Jun Yin <vivien.jyin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Yin",
                      role = c("aut", "cre"),
                      email = "vivien.jyin@gmail.com"),
               person(given = "Yu",
                      family = "Du",
                      role = "aut"),
               person(given = "Sumithra",
                      family = "Mandrekar",
                      role = "aut"))
as necessary.
Packages required but not available: 'plotly', 'zeitgebr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhili Qiao <zlqiao@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhili",
                    family = "Qiao",
                    role = c("aut", "cre"),
                    email = "zlqiao@iastate.edu")
as necessary.
Maintainer: ‘Jesse Hemerik <jesse.hemerik@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "jesse.hemerik@wur.nl"),
               person(given = "Livio",
                      family = "Finos",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpscoAyt/file992887349cce2/pheatmap.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Daniel Doktor <daniel.doktor@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Doktor",
                      role = c("aut", "cre"),
                      email = "daniel.doktor@ufz.de"))
as necessary.
Maintainer: ‘Maximilian Lange <maximilian.lange@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maximilian",
                    family = "Lange",
                    role = c("aut", "cre"),
                    email = "maximilian.lange@ufz.de")
as necessary.
Maintainer: ‘Koen Hufkens <koen.hufkens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bijan",
                      family = "Seyednasrollah",
                      role = c("aut", "cre"),
                      email = "bijan.s.nasr@gmail.com"),
               person(given = c("Jennifer", "J."),
                      family = "Swenson",
                      role = "aut"),
               person(given = "Jean-Christophe",
                      family = "Domec",
                      role = "aut"),
               person(given = c("James", "S."),
                      family = "Clark",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Checking relative paths failed with message:
  cannot open the connection
install log ‘’ does not exist
Packages required but not available:
  'CodelistGenerator', 'CohortCharacteristics', 'CohortConstructor',
  'DrugUtilisation', 'IncidencePrevalence', 'MeasurementDiagnostics',
  'omopgenerics', 'OmopSketch', 'PatientProfiles'

Packages suggested but not available for checking:
  'CDMConnector', 'omock', 'DiagrammeR', 'plotly', 'CohortSurvival',
  'visOmopResults', 'officer', 'OmopConstructor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Janez Komelj <jkomelj@siol.net>’

The Description field contains
  <doi:10.4236/ajcm.2023.134026> (or reprint <arXiv:2312.00011> with
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John E. Kolassa <kolassa@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "E."),
                      family = "Kolassa",
                      role = c("aut", "cre"),
                      email = "kolassa@stat.rutgers.edu"),
               person(given = "Juan",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Packages required but not available: 'FactoMineR', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘phoenix.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpEMsUiK/Rf9cb4f4d23feb7': No space left on device

Quitting from phoenix.Rmd:861-872 [unnamed-chunk-30]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from phoenix.Rmd:861-872 [unnamed-chunk-30]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'phoenix.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘phoenix.Rmd’

SUMMARY: processing the following file failed:
  ‘phoenix.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘phonetise.Rmd’ using rmarkdown

Quitting from phonetise.Rmd:55-59 [kl]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'phonetise.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘phonetise.Rmd’

SUMMARY: processing the following file failed:
  ‘phonetise.Rmd’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘df_to_tier.R’
Maintainer: ‘Daniel R. McCloy <drmccloy@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "R."),
                    family = "McCloy",
                    role = c("aut", "cre"),
                    email = "drmccloy@uw.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘indo.Rd’:
    http://dx.doi.org/10.1121/1.4870068
  File ‘normVowels.Rd’:
    http://dx.doi.org/10.1016/0378-5955(90)90170-T
    http://dx.doi.org/10.1121/1.1912396
    http://dx.doi.org/10.1121/1.399849
  File ‘repulsiveForce.Rd’:
    http://dx.doi.org/10.1177/0023830914559234
    http://dx.doi.org/10.1145/378456.378457
Maintainer: ‘Santiago Barreda <sbarreda@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Santiago",
                    family = "Barreda",
                    role = c("aut", "cre"),
                    email = "sbarreda@ucdavis.edu")
as necessary.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘photobiology’

Packages suggested but not available for checking:
  'ggspectra', 'photobiologyWavebands'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘photobiology’

Packages suggested but not available for checking:
  'fda.usc', 'ggspectra', 'photobiologyWavebands'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘photobiology’

Packages suggested but not available for checking:
  'ggspectra', 'photobiologyWavebands', 'photobiologyLEDs'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘photobiology’

Packages suggested but not available for checking:
  'photobiologyWavebands', 'photobiologyLamps', 'ggspectra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'photobiology', 'photobiologyWavebands'

Package suggested but not available for checking: ‘ggspectra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/photobiology.Rcheck/00install.out’ for details.
Package required but not available: ‘photobiology’

Packages suggested but not available for checking:
  'photobiologyWavebands', 'ggspectra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘photobiology’

Packages suggested but not available for checking:
  'photobiologyWavebands', 'ggspectra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘photobiology’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘photosynthesisLRC-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpQRXJQ9/file9f2ca20826584/eq5.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘chi-operations.Rmd’ using rmarkdown
--- finished re-building ‘chi-operations.Rmd’

--- re-building ‘percent.Rmd’ using rmarkdown

Quitting from percent.Rmd:179-182 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'flextable'
---
Backtrace:
    ▆
 1. └─base::library(flextable)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'percent.Rmd' failed with diagnostics:
there is no package called 'flextable'
--- failed re-building ‘percent.Rmd’

SUMMARY: processing the following file failed:
  ‘percent.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jennifer Pohle <jennifer.pohle@uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jennifer",
                    family = "Pohle",
                    role = c("aut", "cre"),
                    email = "jennifer.pohle@uni-bielefeld.de")
as necessary.

The Description field contains
  hidden semi-Markov models. <arXiv:2101.09197>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Caterina Pisani <caterina.pisani@unisi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Caterina",
                    family = "Pisani",
                    role = c("aut", "cre"),
                    email = "caterina.pisani@unisi.it")
as necessary.
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: phyclust/doc/Documents/tzeng-Readme.txt
    From: inst/doc/phyclust-guide.pdf
  URI: phyclust/inst/doc/Documents/tzeng-Readme.txt
    From: inst/doc/phyclust-guide.pdf
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
Maintainer: ‘John R. Stevens <john.r.stevens@usu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Conrad"),
                      family = "Stack",
                      role = "aut"),
               person(given = c("John", "R."),
                      family = "Stevens",
                      role = "cre",
                      email = "john.r.stevens@usu.edu"))
as necessary.
Package required but not available: ‘phylobase’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmppcMpo6/Rd2pdf997156af7665b/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Francois Michonneau <francois.michonneau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R", "Hackathon", "et"),
                      family = "al.",
                      role = "aut",
                      comment = "alphabetically: Ben Bolker, Marguerite Butler,\n    Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut\n    Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara,\n    Emmanuel Paradis, Jim Regetz, Derrick Zwickl"),
               person(given = "Francois",
                      family = "Michonneau",
                      role = "cre",
                      email = "francois.michonneau@gmail.com"))
as necessary.
Package required but not available: ‘RNeXML’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘phylobase’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Note: skipping ‘tutorial.Rmd’ due to unavailable dependencies: 'TreeSim'
Maintainer: ‘Shaun Wilkinson <shaunpwilkinson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘rr2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xia Hua <xia.hua@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xia",
                      family = "Hua",
                      role = c("aut", "cre"),
                      email = "xia.hua@anu.edu.au"),
               person(given = "Lindell",
                      family = "Bromham",
                      role = "aut",
                      email = "lindell.bromham@anu.edu.au"))
as necessary.
cannot open the connection
problem found in ‘twoterm.lmm.stan.Rd’
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘phyloraster-vignette.Rmd’ using rmarkdown

Quitting from phyloraster-vignette.Rmd:66-72 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'phylobase'
---
Backtrace:
    ▆
 1. └─base::library(phylobase)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'phyloraster-vignette.Rmd' failed with diagnostics:
there is no package called 'phylobase'
--- failed re-building ‘phyloraster-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘phyloraster-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Benchmark.Rmd’ using rmarkdown
--- finished re-building ‘Benchmark.Rmd’

--- re-building ‘ed.Rmd’ using rmarkdown
--- finished re-building ‘ed.Rmd’

--- re-building ‘phyloregion-intro.Rmd’ using rmarkdown

Quitting from phyloregion-intro.Rmd:195-212 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/Rtmp3fYjIU/filecbb79550af1d1'
---
Backtrace:
    ▆
 1. ├─base::plot(...)
 2. └─terra::plot(...)
 3.   └─terra (local) .local(x, y, ...)
 4.     └─terra:::.prep.vect.data(...)
 5.       └─terra:::.plot.vect.map(x, out, xpd = xpd, ...)
 6.         ├─base::plot(...)
 7.         ├─base::plot(...)
 8.         └─graphics::plot.default(...)
 9.           └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'phyloregion-intro.Rmd' failed with diagnostics:
could not open file '/tmp/Rtmp3fYjIU/filecbb79550af1d1'
--- failed re-building ‘phyloregion-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘phyloregion-intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'

Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'phylobase', 'phylopath'

Packages suggested but not available for checking:
  'semPlot', 'Rphylopars', 'phylosignal', 'adephylo'

Package which this enhances but not available for checking: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Julia Fukuyama <julia.fukuyama@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julia",
                    family = "Fukuyama",
                    role = c("aut", "cre"),
                    email = "julia.fukuyama@gmail.com")
as necessary.
Package required but not available: ‘ggnetwork’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Packages required but not available: 'adephylo', 'phylobase'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Beer <dlbeer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Beer",
                      role = c("aut", "cre"),
                      email = "dlbeer@gmail.com"),
               person(given = "Anusha",
                      family = "Beer",
                      role = "aut"))
as necessary.
cannot open the connection
cannot open the connection
problems found in ‘read_annotated.Rd’, ‘write_annotated.Rd’
Packages required but not available: 'NHPoisson', 'phylobase'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpPM5QUm/ltxb3c6d43a3240b/plot.phylter.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Alan Grafen <alan.grafen@sjc.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Grafen",
                    role = c("aut", "cre"),
                    email = "alan.grafen@sjc.ox.ac.uk")
as necessary.
Maintainer: ‘J. Dustin Tracy <tracy@chapman.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Dustin"),
                      family = "Tracy",
                      role = c("aut", "cre"),
                      email = "tracy@chapman.edu"),
               person(given = "Zhiyi",
                      family = "Xu",
                      role = "aut"),
               person(given = "Sari",
                      family = "Acra",
                      role = "aut"),
               person(given = c("Kong", "Y."),
                      family = "Chen",
                      role = "aut"),
               person(given = c("Maciej", "S."),
                      family = "Buchowski",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Donnelly",
                      role = "aut"))
as necessary.
checkRd: (-1) pa-internal.Rd:11: Lost braces
    11 | code{l2df}: convert list to data.frame
       |     ^
checkRd: (-1) pa-internal.Rd:14: Lost braces
    14 | code{convertTZ}: force a new timezone on datetime
       |     ^
checkRd: (-1) pa-internal.Rd:16: Lost braces
    16 | code{createTime}: create datetime variable
       |     ^
checkRd: (-1) pa-internal.Rd:18: Lost braces
    18 | code{addDayIndex}: create ID_day variable from timestamp
       |     ^
Running examples in ‘PhysicalActivity-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: deliveryPred
> ### Title: Wrapper Function for Accelerometry data Preprocessing, Feature
> ###   Extraction, and Delivery Prediction
> ### Aliases: deliveryPred
> 
> ### ** Examples
> 
> data(deliveryData)
> 
> predictions <- deliveryPred(df = deliveryData, model = "GLM")
Warning in deliveryPreprocess(df = df) :
  .id unspecified - dummy ID created
Error: deliveryPrediction requires the rms package, please install it.
Execution halted
Package required but not available: ‘bestNormalize’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven W. Kembel <steve.kembel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Steven", "W."),
                      family = "Kembel",
                      role = c("aut", "cre"),
                      email = "steve.kembel@gmail.com"),
               person(given = c("David", "D."),
                      family = "Ackerly",
                      role = "aut",
                      email = "dackerly@berkeley.edu"),
               person(given = c("Simon", "P."),
                      family = "Blomberg",
                      role = "aut",
                      email = "s.blomberg1@uq.edu.au"),
               person(given = c("Will", "K."),
                      family = "Cornwell",
                      role = "aut",
                      email = "cornwell@zoology.ubc.ca"),
               person(given = c("Peter", "D."),
                      family = "Cowan",
                      role = "aut",
                      email = "pdc@berkeley.edu"),
               person(given = c("Matthew", "R."),
                      family = "Helmus",
                      role = "aut",
                      email = "mrhelmus@wisc.edu"),
               person(given = "Helene",
                      family = "Morlon",
                      role = "aut",
                      email = "morlon.helene@gmail.com"),
               person(given = c("Campbell", "O."),
                      family = "Webb",
                      role = "aut",
                      email = "cwebb@oeb.harvard.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) IvesGodfray.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Kcalc.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) phylocom.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylosignal.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) sample2matrix.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) traitgram.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) utility.Rd:37: Escaped LaTeX specials: \$ \$
Maintainer: ‘Chun Pan <chunpan2003@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chun",
                    family = "Pan",
                    role = c("aut", "cre"),
                    email = "chunpan2003@hotmail.com")
as necessary.
Maintainer: ‘Matt Deppe <deppemj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Deppe",
                    role = c("aut", "cre"),
                    email = "deppemj@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exr-read.R’ ‘exr-types-read.R’ ‘exr-write.R’ ‘utils.R’
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'car', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'alakazam', 'tigger'

Package suggested but not available for checking: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Examples.Rmd’ using rmarkdown
Warning in file(con, "w") :
  cannot open file '/tmp/Rtmpfid0uG/rmarkdown-stra6ad51082dca1.html': No space left on device
Error: processing vignette 'Examples.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Examples.Rmd’

--- re-building ‘userman.Rmd’ using rmarkdown
--- finished re-building ‘userman.Rmd’

SUMMARY: processing the following file failed:
  ‘Examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Checking relative paths failed with message:
  inferior call failed
Running massageExamples to create ‘pim-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmpxu18GL/filea85f6688a5151/new.pim.poset.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpNLJzQB/filea9eee38cd0046': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpNLJzQB/filea9eee38cd0046': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Michael",
                      family = "Yan",
                      role = "aut"))
as necessary.
Running examples in ‘pinnacle.data-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: USA_Election_2016
> ### Title: USA_Election_2016
> ### Aliases: USA_Election_2016
> ### Keywords: datasets
> 
> ### ** Examples
> 
> if (require("odds.converter")) {
+ library(tidyverse)
+ # What is Hilary Clinton's the highest implied winning probability at Pinnacle?
+ 
+ USA_Election_2016[which.min(USA_Election_2016$MoneyUS1),"EnteredDateTime"]
+ odds.converter::odds.us2prob(min(USA_Election_2016$MoneyUS1))
+ }
Loading required package: odds.converter
Error in library(tidyverse) : there is no package called ‘tidyverse’
Execution halted
Maintainer: ‘Danilo Freire <danilofreire@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘pinochet.Rmd’ using rmarkdown

Quitting from pinochet.Rmd:51-58 [table]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pinochet.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘pinochet.Rmd’

SUMMARY: processing the following file failed:
  ‘pinochet.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘deaR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sahil Seth <me@sahilseth.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Houston", "R"),
                      family = "Users",
                      role = "aut"),
               person(given = "Neeraj",
                      family = "Tandon",
                      role = "aut"),
               person(given = "Ed",
                      family = "Goodwin",
                      role = "aut"),
               person(given = c("Ju", "Yeong"),
                      family = "Kim",
                      role = "aut"),
               person(given = "Sahil",
                      family = "Seth",
                      role = c("aut", "cre"),
                      email = "me@sahilseth.com"))
as necessary.
Maintainer: ‘Alex Ioannides <alex.ioannides@yahoo.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Ioannides",
                    role = c("aut", "cre"),
                    email = "alex.ioannides@yahoo.co.uk")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction.Rmd’ using rmarkdown

Quitting from Introduction.Rmd:118-141 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Fatal error: cannot create 'R_TempDir'


See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Maintainer: ‘Lars Van Cutsem <lars.vancutsem@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lars",
                    family = "Van Cutsem",
                    role = c("aut", "cre"),
                    email = "lars.vancutsem@hotmail.com")
as necessary.
Maintainer: ‘Leonardo Egidi <legidi@units.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leonardo",
                      family = "Egidi",
                      role = c("aut", "cre"),
                      email = "legidi@units.it"),
               person(given = "Roberta",
                      family = "Pappadà",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Pauli",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpO4sCqs/fileb5b3d152f038.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘extract_col.Rd’ ‘na2empty.Rd’ ‘omit_na_cols.Rd’ ‘omit_na_rows.Rd’
    ‘pivot.R’ ‘pivot.Rd’ ‘utils.R’ ‘validate_col.Rd’
cannot open the connection
cannot open the connection
problems found in ‘split_force.Rd’, ‘validate_col.Rd’
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘vreConvertSimpleNumericRange.Rd’, ‘vreGetSingleValue.Rd’, ‘vreHexToClr.Rd’, ‘vreIsEqual.Rd’, ‘vreIsMatch.Rd’, ‘vreIsSimpleNumericRange.Rd’, ‘vreIsSingleValue.Rd’, ‘vreScale2Colours.Rd’, ‘vreScaleNumber.Rd’
Maintainer: ‘Martin Stingl <martin.stingl@dfv.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Stingl",
                    role = c("aut", "cre"),
                    email = "martin.stingl@dfv.de")
as necessary.
checkRd: (-1) get_pixels.Rd:27-29: Lost braces
    27 | if (interactive()) {
       |                    ^
Running massageExamples to create ‘pixels-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
install log ‘’ does not exist
Checking relative paths failed with message:
  inferior call failed
Error(s) in re-building vignettes:
  ...
--- re-building ‘basics.Rmd’ using rmarkdown
--- finished re-building ‘basics.Rmd’

--- re-building ‘ome-ngff.Rmd’ using rmarkdown
--- finished re-building ‘ome-ngff.Rmd’

--- re-building ‘pizzarr.Rmd’ using rmarkdown
--- finished re-building ‘pizzarr.Rmd’

--- re-building ‘remote-anndata.Rmd’ using rmarkdown
--- finished re-building ‘remote-anndata.Rmd’

--- re-building ‘remote-ome-ngff.Rmd’ using rmarkdown
--- finished re-building ‘remote-ome-ngff.Rmd’

--- re-building ‘session_info.Rmd’ using rmarkdown
--- finished re-building ‘session_info.Rmd’

--- re-building ‘v3-interop.Rmd’ using rmarkdown

Quitting from v3-interop.Rmd:61-65 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `root$get_item()`:
! KeyError: item
---
Backtrace:
    ▆
 1. └─root$get_item("int32_1d")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'v3-interop.Rmd' failed with diagnostics:
KeyError: item
--- failed re-building ‘v3-interop.Rmd’

--- re-building ‘v3-read.Rmd’ using rmarkdown
--- finished re-building ‘v3-read.Rmd’

--- re-building ‘zarr-operations.Rmd’ using rmarkdown
--- finished re-building ‘zarr-operations.Rmd’

--- re-building ‘zarrs-backend.Rmd’ using rmarkdown
--- finished re-building ‘zarrs-backend.Rmd’

SUMMARY: processing the following file failed:
  ‘v3-interop.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'DiagrammeR', 'janitor', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eun-Kyung",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "lee.eunk@gmail.com"),
               person(given = "Hye-sun",
                      family = "Cho",
                      role = "aut"))
as necessary.
Running examples in ‘pkgcache-Ex.R’ failed
The error occurred in:

Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Packages required but not available: 'tidygraph', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmp828TVz/Rfaa14c7b378868': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Running ‘testthat.R’ [9s/6s]
  Running ‘wipe.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(pkgload)
  > 
  > # Needed so that install.packages works correctly
  > Sys.setenv("R_TESTS" = "")
  > 
  > test_check("pkgload")
  Starting 2 test processes.
  > test-extraction.R: Warning messages:
  > test-extraction.R: 1: In dir.create(path, recursive = TRUE) :
  > test-extraction.R:   cannot create dir '/tmp/RtmpAyao7X/fileae63c1891ead7', reason 'No space left on device'
  > test-extraction.R: 2: In file(file, mode) :
  > test-extraction.R:   cannot open file '/tmp/Rtmpi01NEF/callr-rs-result-ae3181e4f7912': No space left on device
  
  Error:
  ! testthat subprocess exited in file 'test-extraction.R'.
  Caused by error:
  ! in callr subprocess.
  Caused by error:
  ! cannot open the connection
  Backtrace:
       ▆
    1. └─testthat::test_check("pkgload")
    2.   └─testthat::test_dir(...)
    3.     └─testthat:::test_files(...)
    4.       └─testthat:::test_files_parallel(...)
    5.         ├─withr::with_dir(...)
    6.         │ └─base::force(code)
    7.         ├─testthat::with_reporter(...)
    8.         │ └─base::tryCatch(...)
    9.         │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   10.         │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11.         │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   12.         └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
   13.           └─queue$poll(Inf)
   14.             └─base::lapply(...)
   15.               └─testthat (local) FUN(X[[i]], ...)
   16.                 └─private$handle_error(msg, i)
   17.                   └─cli::cli_abort(...)
   18.                     └─rlang::abort(...)
  Execution halted
Error: package or namespace load failed for ‘pkgndep’:
 .onLoad failed in loadNamespace() for 'pkgndep', details:
  call: gzfile(file, mode)
  error: cannot open the connection
Execution halted

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Maintainer: ‘Meta-Lina Spohn <metalina.spohn@stat.math.ethz.ch>’

The Description field contains
  Michel et al. (2021) <arXiv:2109.10150>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Francois Deslandes <francois.deslandes@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jade",
                      family = "Giguelay",
                      role = "aut"),
               person(given = "Francois",
                      family = "Deslandes",
                      role = "cre",
                      email = "francois.deslandes@inra.fr"))
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [10s/12s] OK
Maintainer: ‘Thomas Jaki <jaki.thomas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Jaki",
                      role = c("aut", "cre"),
                      email = "jaki.thomas@gmail.com"),
               person(given = c("Martin", "J."),
                      family = "Wolfsegger",
                      role = "aut",
                      email = "wolfseggerm@gmx.at"))
as necessary.
Maintainer: ‘Nan-Hung Hsieh <d99622005@ntu.edu.tw>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpxTEC2g/Rfaa02145632ebb': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Erick Marroquin <ericksuhel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erick",
                    family = "Marroquin",
                    role = c("aut", "cre"),
                    email = "ericksuhel@gmail.com")
as necessary.
Maintainer: ‘Dan Kelley <Dan.Kelley@Dal.Ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Kelley",
                      role = c("aut", "cre"),
                      email = "Dan.Kelley@Dal.Ca"),
               person(given = "Frank",
                      family = "Schmitt",
                      role = "aut",
                      email = "frankschmitt@gmx.de"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Yves Rozenholc <yves.rozenholc@parisdescartes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yves",
                      family = "Rozenholc",
                      role = c("aut", "cre"),
                      email = "yves.rozenholc@parisdescartes.fr"),
               person(given = "Nicolas",
                      family = "Pécuchet",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Laurent-Puig",
                      role = "aut"))
as necessary.
Packages required but not available: 'VariantAnnotation', 'rtracklayer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plsRcox’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) one_design.Rd:125-126: Lost braces
   125 | function serves for the purpose of spot-testing for any pre-specified {n,
       |                                                                       ^
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson",
                      role = c("aut", "cre"),
                      email = "alec_stephenson@hotmail.com"),
               person(given = "Jeff",
                      family = "Sonas.",
                      role = "aut"))
as necessary.
Maintainer: ‘Jason Sinnwell <sinnwell.jason@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J"),
                      family = "Schaid",
                      role = "aut"),
               person(given = "Jason",
                      family = "Sinnwell",
                      role = "cre",
                      email = "sinnwell.jason@mayo.edu"))
as necessary.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'keras', 'ggraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dhammapal Bharne <dhammapalb@uohyd.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dhammapal",
                      family = "Bharne",
                      role = c("aut", "cre"),
                      email = "dhammapalb@uohyd.ac.in"),
               person(given = "Vaibhav",
                      family = "Vindal",
                      role = "aut"))
as necessary.
Maintainer: ‘Jonathan P. Weeks <weeksjp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonathan", "P."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeksjp@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhi Wei <zhiwei04@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhi", "Wei", "&", "Wenguang"),
                      family = "Sun",
                      role = "aut"),
               person(given = "Zhi",
                      family = "Wei",
                      role = "cre",
                      email = "zhiwei04@gmail.com"))
as necessary.
Running massageExamples to create ‘plmmr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpXA7kgK/fileb640c428e3915/coef.plmm.R': No space left on device
Execution halted
 NONE
Error(s) in re-building vignettes:
  ...
--- re-building ‘A_plmPackage.Rmd’ using rmarkdown

Quitting from A_plmPackage.Rmd:2054-2057 [car-vcovHC]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'car'
---
Backtrace:
    ▆
 1. └─base::library("car")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'A_plmPackage.Rmd' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘A_plmPackage.Rmd’

--- re-building ‘B_plmFunction.Rmd’ using rmarkdown
--- finished re-building ‘B_plmFunction.Rmd’

--- re-building ‘C_plmModelComponents.Rmd’ using rmarkdown

Quitting from C_plmModelComponents.Rmd:178-180 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'AER'
---
Backtrace:
    ▆
 1. ├─stats::coef(AER::ivreg(formiv1, data = SeatBelt))
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'C_plmModelComponents.Rmd' failed with diagnostics:
there is no package called 'AER'
--- failed re-building ‘C_plmModelComponents.Rmd’

SUMMARY: processing the following files failed:
  ‘A_plmPackage.Rmd’ ‘C_plmModelComponents.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘Import_data.Rmd’ using rmarkdown
--- finished re-building ‘Import_data.Rmd’

--- re-building ‘PLN.Rmd’ using rmarkdown
--- finished re-building ‘PLN.Rmd’

--- re-building ‘PLNLDA.Rmd’ using rmarkdown
--- finished re-building ‘PLNLDA.Rmd’

--- re-building ‘PLNPCA.Rmd’ using rmarkdown

Quitting from PLNPCA.Rmd:34-39 [requirement]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'factoextra'
---
Backtrace:
    ▆
 1. └─base::library(factoextra)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PLNPCA.Rmd' failed with diagnostics:
there is no package called 'factoextra'
--- failed re-building ‘PLNPCA.Rmd’

--- re-building ‘PLNmixture.Rmd’ using rmarkdown

Quitting from PLNmixture.Rmd:37-40 [requirement]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'factoextra'
---
Backtrace:
    ▆
 1. └─base::library(factoextra)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PLNmixture.Rmd' failed with diagnostics:
there is no package called 'factoextra'
--- failed re-building ‘PLNmixture.Rmd’

--- re-building ‘PLNnetwork.Rmd’ using rmarkdown
--- finished re-building ‘PLNnetwork.Rmd’

--- re-building ‘Trichoptera.Rmd’ using rmarkdown
--- finished re-building ‘Trichoptera.Rmd’

SUMMARY: processing the following files failed:
  ‘PLNPCA.Rmd’ ‘PLNmixture.Rmd’

Error: Vignette re-building failed.
Execution halted
Running massageExamples to create ‘plnr-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpNoqdKJ/fileaff6d6807325e/example_action_fn.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/plot3logit.Rcheck/00install.out’ for details.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/plot4fun.Rcheck/00install.out’ for details.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Olivia Cheronet <cheronetolivia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olivia",
                    family = "Cheronet",
                    role = c("aut", "cre"),
                    email = "cheronetolivia@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/plotly.Rcheck/00install.out’ for details.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'janitor'

Packages suggested but not available for checking: 'labelled', 'R4HCR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stephen Milborrow <milbo@sonic.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Milborrow",
                    role = c("aut", "cre"),
                    email = "milbo@sonic.net")
as necessary.
Maintainer: ‘Joaquin Bienvenido Ordieres Mere <j.ordieres@upm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Javier", "Celigueta"),
                      family = "Mu<b1>oz",
                      role = "aut",
                      email = "b1"),
               person(given = c("Joaquin", "Bienvenido", "Ordieres"),
                      family = "Mere",
                      role = "cre",
                      email = "j.ordieres@upm.es"))
as necessary.
Maintainer: ‘Yao Geng <gengyao0103521@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yao",
                      family = "Geng",
                      role = "cre",
                      email = "gengyao0103521@qq.com"))
as necessary.
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein-package.Rd:20: Lost braces
    20 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmplT92XD/fileb2e6739008917/conservation.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘corner.label.Rd’, ‘count.overplot.Rd’, ‘cylindrect.Rd’, ‘death_reg.Rd’, ‘dendroPlot.Rd’, ‘densityGrid.Rd’
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Maintainer: ‘January Weiner <january.weiner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "January",
                    family = "Weiner",
                    role = c("aut", "cre"),
                    email = "january.weiner@gmail.com")
as necessary.
Maintainer: ‘Felipe Queiroz <ffelipeq@outlook.com>’

The Description field contains
  are described in Queiroz and Ferrari (2022) <arXiv:2202.01697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ana Lopez-Cheda <ana.lopez.cheda@udc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("German", "Aneiros"),
                      family = "Perez",
                      role = "aut"),
               person(given = "Ana",
                      family = "Lopez-Cheda",
                      role = c("aut", "cre"),
                      email = "ana.lopez.cheda@udc.es"))
as necessary.
Maintainer: ‘Ghislain Durif <gd.dev@libertymail.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne-Laure",
                      family = "Boulesteix",
                      role = "aut",
                      email = "boulesteix@ibe.med.uni-muenchen.de"),
               person(given = "Ghislain",
                      family = "Durif",
                      role = c("aut", "cre"),
                      email = "gd.dev@libertymail.net"),
               person(given = "Sophie",
                      family = "Lambert-Lacroix",
                      role = "aut",
                      email = "sophie.lambert-lacroix@univ-grenoble-alpes.fr"),
               person(given = "Julie",
                      family = "Peyre",
                      role = "aut",
                      email = "Julie.Peyre@univ-grenoble-alpes.fr"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut",
                      email = "k.strimmer@imperial.ac.uk"))
as necessary.
Package required but not available: ‘parsnip’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plsRglm’

Package suggested but not available for checking: ‘bipartite’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plsRglm', 'survAUC', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘modsem’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eva", "Herrmann;", "R", "interface", "etc", "by", "Martin"),
                      family = "Maechler",
                      role = "aut",
                      email = "eherrmann@mathematik.tu-darmstadt.de",
                      comment = "C original"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "cre",
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plug.R’
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpV1bH6V/ltxb2e89619fc028/plug_execute_query.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "aut"))
as necessary.
checkRd: (-1) plu_more.Rd:16: Lost braces; missing escapes or markup?
    16 | Additional arguments are replaced with "{n} more".
       |                                         ^
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmp3LV1By/Rd2pdfafbb22e4a69c/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Michael Doyle <michaeledoyle7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Doyle",
                    role = c("aut", "cre"),
                    email = "michaeledoyle7@gmail.com")
as necessary.
Package required but not available: ‘baizer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tableone’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘Hmisc’

Package suggested but not available for checking: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) PMCMR-deprecated.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘enviGCMS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pmetar.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘earned_value.R’ ‘planned_value.R’ ‘pmevR6.R’
Package required but not available: ‘pmcalibration’

Packages suggested but not available for checking: 'Hmisc', 'rms', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp4cSb0M/ltxc584345daa2bb/pmml.hclust.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Paul H. Lee <honglee@graduate.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "H."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "honglee@graduate.hku.hk"),
               person(given = c("Philip", "L.", "H."),
                      family = "Yu",
                      role = "aut"))
as necessary.
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                   ^
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                              ^
Maintainer: ‘Alexander Davis <ajdavis2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Davis",
                    role = c("aut", "cre"),
                    email = "ajdavis2@mdanderson.org")
as necessary.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PNDSIBGE.Rcheck/00install.out’ for details.
Error(s) in re-building vignettes:
  ...
--- re-building ‘peak-finder.Rmd’ using rmarkdown

Quitting from peak-finder.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'plotly'
---
Backtrace:
    ▆
 1. └─base::library(plotly)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'peak-finder.Rmd' failed with diagnostics:
there is no package called 'plotly'
--- failed re-building ‘peak-finder.Rmd’

SUMMARY: processing the following file failed:
  ‘peak-finder.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jake Lawlor <jakealawlor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Lawlor",
                    role = c("aut", "cre"),
                    email = "jakealawlor@gmail.com")
as necessary.
Maintainer: ‘Dabao Zhang <zhangdb@purdue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dabao",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangdb@purdue.edu"),
               person(given = "Zhongli",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Zeyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yu-ting",
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘"Brewer, Ben (arb5mt)" <arb5mt@virginia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nolan", "A."),
                      family = "Wages",
                      role = "aut"),
               person(family = "\"Brewer",
                      role = "cre"),
               person(family = "Ben\"",
                      role = "cre",
                      email = "arb5mt@virginia.edu",
                      comment = "arb5mt"))
as necessary.
Maintainer: ‘Markus Boenn <markus.boenn.sf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Boenn",
                    role = c("aut", "cre"),
                    email = "markus.boenn.sf@gmail.com",
                    comment = "State Office for Consumer Protection Saxony-Anhalt, Germany")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpPdpowG/ltxfd67e7ffef524/Region.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Martina Mincheva <m.z.mincheva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jianqing",
                      family = "Fan",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Liao",
                      role = "aut"),
               person(given = "Martina",
                      family = "Mincheva",
                      role = c("aut", "cre"),
                      email = "m.z.mincheva@gmail.com"))
as necessary.
Maintainer: ‘Michaela Dvorzak <m.dvorzak@gmx.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘logistf’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniela",
                    family = "Witten",
                    role = c("aut", "cre"),
                    email = "dwitten@u.washington.edu")
as necessary.
Package required but not available: ‘dbplyr’

Package suggested but not available for checking: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul Evangelista <paul.evangelista@westpoint.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Paul",
                      family = "Evangelista",
                      role = "aut",
                      email = "paul.evangelista@westpoint.edu"),
               person(given = "Dave",
                      family = "Beskow\"",
                      role = "aut",
                      email = "david.beskow@westpoint.edu"),
               person(given = "Paul",
                      family = "Evangelista",
                      role = "cre",
                      email = "paul.evangelista@westpoint.edu"))
as necessary.
Packages required but not available: 'inlabru', 'fmesher', 'blockCV'

Packages suggested but not available for checking: 'INLA', 'ggmap', 'spocc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Patrick Schmidt <pschmidte@gmail.com>’

The Description field contains
  Katzfuss and Gneiting (2015) <arXiv:1506.01917> for more details on the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marieke van der Maaten-Theunissen <marieke.theunissen@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marieke",
                      family = "van der Maaten-Theunissen",
                      role = c("aut", "cph", "cre", "trl"),
                      email = "marieke.theunissen@tu-dresden.de"),
               person(given = "Ernst",
                      family = "van der Maaten",
                      role = c("aut", "trl")),
               person(given = "Gottfried",
                      family = "Jetsckhe",
                      role = c("aut", "trl")),
               person(given = "Mario",
                      family = "Trouillier",
                      role = c("aut", "trl")))
as necessary.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rachel",
                      family = "Nordgren",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yiran",
                      family = "Hu",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘David Kahle <david@kahle.io>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

The Description field contains
  bag-of-words-based topic modeling) (Cortes, (2018) <arXiv:1811.01908>),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yaru",
                      family = "Shi",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Toby Kenney <tkenney@mathstat.dal.ca>’

The Description field contains
  Kenney, T. Huang, H. Gu (2019) <arXiv:1904.11745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘parsnip’

Package suggested but not available for checking: ‘rstanarm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘riskRegression’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Pechel Cactcha <davidpechel@uy1.uninet.cm>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Pechel"),
                      family = "Cactcha",
                      role = c("aut", "cre"),
                      email = "davidpechel@uy1.uninet.cm"),
               person(given = c("Laure", "Pauline"),
                      family = "Fotso",
                      role = "aut"),
               person(given = c("Celestin", "C"),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PolarCAP.Rcheck/00install.out’ for details.
Packages required but not available: 'detourr', 'plotly', 'quollr', 'tourr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘textstem’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'car', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Barry Edwards <barry.edwards@ucf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Barry",
                      family = "Edwards",
                      role = c("aut", "cre"),
                      email = "barry.edwards@ucf.edu"),
               person(given = "Philip",
                      family = "Pollock",
                      role = "aut"))
as necessary.
Packages required but not available: 'Hmisc', 'weights', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘automagic’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'NaileR', 'FactoMineR'

Package suggested but not available for checking: ‘SensoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hiperfrac.R’ ‘rice.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘optimal_subgroup.Rmd’ using rmarkdown
--- finished re-building ‘optimal_subgroup.Rmd’

--- re-building ‘policy_data.Rmd’ using rmarkdown
--- finished re-building ‘policy_data.Rmd’

--- re-building ‘policy_eval.Rmd’ using rmarkdown
--- finished re-building ‘policy_eval.Rmd’

--- re-building ‘policy_learn.Rmd’ using rmarkdown
--- finished re-building ‘policy_learn.Rmd’

--- re-building ‘right_censoring.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpuAaHU8/Rf10197a273959b1': No space left on device

Quitting from right_censoring.Rmd:214-225 [pe]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from right_censoring.Rmd:214-225 [pe]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'right_censoring.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘right_censoring.Rmd’

SUMMARY: processing the following file failed:
  ‘right_censoring.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpH4N6S7/file1022a859330e1e': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpH4N6S7/file1022a859330e1e': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘labelled’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/polmineR.Rcheck/00install.out’ for details.
install log ‘’ does not exist
Maintainer: ‘Conrad Burden <conrad.burden@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conrad",
                    family = "Burden",
                    role = c("aut", "cre"),
                    email = "conrad.burden@anu.edu.au")
as necessary.

The Description field contains
  Conrad J. Burden (2014) <arXiv:1406.2780>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Roeland E. Voorrips <roeland.voorrips@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roeland", "E."),
                    family = "Voorrips",
                    role = c("aut", "cre"),
                    email = "roeland.voorrips@wur.nl")
as necessary.
Running examples in ‘polykde-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: index_ridge
> ### Title: Index a ridge curve, creating the Smoothed and Indexed Estimated
> ###   Ridge (SIER)
> ### Aliases: index_ridge
> 
> ### ** Examples
> 
> ## Test on (S^1)^2
> 
> # Sample
> set.seed(132121)
> r <- 2
> d <- rep(1, r)
> n <- 200
> ind_dj <- comp_ind_dj(d = d)
> Th <- matrix(runif(n = n * (r - 1), min = -pi / 2, max = pi / 2),
+              nrow = n, ncol = r - 1)
> Th[, r - 1] <- sort(Th[, r - 1])
> Th <- cbind(Th, sdetorus::toPiInt(
+   pi + Th[, r - 1] + runif(n = n, min = -pi / 4, max = pi / 4)))
> X <- angles_to_torus(Th)
> col_X_alp <- viridis::viridis(n, alpha = 0.25)
> col_X <- viridis::viridis(n)
> 
> # Euler
> h_rid <- rep(0.75, r)
> h_eu <- h_rid^2
> N <- 200
> eps <- 1e-6
> Y <- euler_ridge(x = X, X = X, d = d, h = h_rid, h_euler = h_eu,
+                  N = N, eps = eps, keep_paths = TRUE)
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
> 
> # Visualization
> i <- N # Between 1 and N
> plot(rbind(torus_to_angles(Y$paths[, , 1])), col = col_X_alp, pch = 19,
+      axes = FALSE, xlim = c(-pi, pi), ylim = c(-pi, pi),
+      xlab = "", ylab = "")
> points(rbind(torus_to_angles(Y$paths[, , i])), col = col_X, pch = 16,
+        cex = 0.75)
> sdetorus::torusAxis(1:2)
> for (k in seq_len(nrow(Y$paths))) {
+ 
+   xy <- torus_to_angles(t(Y$paths[k, , ]))
+   sdetorus::linesTorus(x = xy[, 1], y = xy[, 2], col = col_X_alp[k])
+ 
+ }
> 
> # SIER
> ind_rid <- index_ridge(endpoints = Y$ridge_y, X = X, d = d,
+                        probs_scores = seq(0, 1, l = 50))
Error in loadNamespace(x) : there is no package called ‘smacof’
Calls: index_ridge ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package required but not available: ‘MDSMap’

Packages suggested but not available for checking: 'Hmisc', 'mappoly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = c("with", "contribution", "by", "Kurt"),
                      family = "Hornik",
                      role = "aut"),
               person(given = "Georgi",
                      family = "Boshnakov",
                      role = "aut"),
               person(given = "Brian",
                      family = "Ripley.",
                      role = "aut"))
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Zwart <Alec.Zwart@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Zwart",
                    role = c("aut", "cre"),
                    email = "alec.zwart@csiro.au")
as necessary.
checkRd: (-1) inputData.Rd:94: Lost braces
    94 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) inputData.Rd:95: Lost braces
    95 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) preprocessData.Rd:81: Lost braces
    81 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) preprocessData.Rd:82: Lost braces
    82 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) stat_quantile_prob.Rd:14: Lost braces; missing escapes or markup?
    14 | Number {25, 50, 75}
       |        ^
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'mappoly', 'polymapR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Norm Matloff <matloff@cs.ucdavis.edu>’

The Description field contains
  Matloff, and Pete Mohanty (<arXiv:1806.06850>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sourav Chatterjee <souravc@stanford.edu>’

The Description field contains
  Vidyasagar (2022) <arxiv:2209.07028>. The method is fully
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
install log ‘’ does not exist
Maintainer: ‘Junghi Kim <junghikim0@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junghi",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "junghikim0@gmail.com"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
install log ‘’ does not exist
Running examples in ‘pomdp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_belief_space
> ### Title: Plot a 2D or 3D Projection of the Belief Space
> ### Aliases: plot_belief_space
> ### Keywords: hplot
> 
> ### ** Examples
> 
> # two-state POMDP
> data("Tiger")
> sol <- solve_POMDP(Tiger)
Warning in file(con, "r") :
  cannot open file '/tmp/RtmplEjCaH/pomdp_cb2e8288fa0e4-0.alpha': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: solve_POMDP ... .get_alpha_file -> <Anonymous> -> readLines -> file
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
gridworld 6.022  0.084    6.26
Running ‘testthat.R’ [14s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  > library("pomdp")
  > 
  > test_check("pomdp")
  Saving _problems/test-read_write_POMDP-24.R
  Saving _problems/test-solve_POMDP-53.R
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 106 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-read_write_POMDP.R:24:1'): (code run outside of `test_that()`) ──
  Error in `file(con, "r")`: cannot open the connection
  Backtrace:
      ▆
   1. └─pomdp::solve_POMDP(Tiger) at test-read_write_POMDP.R:24:1
   2.   └─pomdp:::.get_alpha_file(file_prefix, model)
   3.     └─pomdpSolve::read_alpha_file(paste0(file_prefix, "-0.alpha", number))
   4.       └─base::readLines(file)
   5.         └─base::file(con, "r")
  ── Error ('test-solve_POMDP.R:53:1'): (code run outside of `test_that()`) ──────
  Error in `file(con, "r")`: cannot open the connection
  Backtrace:
      ▆
   1. └─pomdp::solve_POMDP("http://www.pomdp.org/examples/cheese.95.POMDP") at test-solve_POMDP.R:53:1
   2.   └─pomdp:::.get_alpha_file(file_prefix, model)
   3.     └─pomdpSolve::read_alpha_file(paste0(file_prefix, "-0.alpha", number))
   4.       └─base::readLines(file)
   5.         └─base::file(con, "r")
  
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 106 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Cyril Piou <cyril.piou@cirad.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pomic-package.Rd’:
    http://dx.doi.org/10.1016/j.ecolmodel.2009.05.003
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘pompp-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp62h1v1/filec582a599b249c/pompp_model.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Gavin Douglas <gavinmdouglas@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
Maintainer: ‘Chris Salahub <chris.salahub@uwaterloo.ca>’

The Description field contains
  in Salahub and Olford (2023) <arXiv:2310.16600>. This package provides
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lech Kujawski <lech.kujawski@ug.edu.pl>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PooledMeanGroup-package.Rd’:
    \keyword{package, PMG, pooled mean group, dynamic  [TRUNCATED]
install log ‘’ does not exist
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘pool-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tbl.Pool
> ### Title: Use pool with dbplyr
> ### Aliases: tbl.Pool copy_to.Pool
> 
> ### ** Examples
> 
> library(dplyr)

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> 
> pool <- dbPool(RSQLite::SQLite())
> # copy a table into the database
> copy_to(pool, mtcars, "mtcars", temporary = FALSE)
Error in check_dbplyr() : 
  The package "dbplyr" is required to communicate with database backends.
Calls: copy_to ... copy_to.DBIConnection -> check_dbplyr -> check_installed
Execution halted
<pool> Checked-out object deleted before being returned.
<pool> Make sure to `poolReturn()` all objects retrieved with `poolCheckout().`
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stefano Nembrini <stefanonembrini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefano",
                    family = "Nembrini",
                    role = c("aut", "cre"),
                    email = "stefanonembrini@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chris Stubben <chris.stubben@hci.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Stubben",
                      role = c("aut", "cre"),
                      email = "chris.stubben@hci.utah.edu"),
               person(given = "Brook",
                      family = "Milligan",
                      role = "aut"),
               person(given = "Patrick",
                      family = "Nantel",
                      role = "aut"))
as necessary.
Packages required but not available: 'Seurat', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘popdemo.Rmd’ using rmarkdown

Quitting from popdemo.Rmd:93-99 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! HTTP response code said error [upload.wikimedia.org]:
The requested URL returned error: 429
---
Backtrace:
    ▆
 1. ├─magick::image_read("https://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Baby_Desert_Tortoise_%2816490346262%29.jpg/1920px-Baby_Desert_Tortoise_%2816490346262%29.jpg?_=20150803190406")
 2. │ └─base::vapply(path, replace_url, character(1))
 3. │   └─magick (local) FUN(X[[i]], ...)
 4. │     ├─base::paste0(download_url(path), suffix)
 5. │     └─magick:::download_url(path)
 6. │       └─curl::curl_download(url, tmp, handle = h)
 7. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'popdemo.Rmd' failed with diagnostics:
HTTP response code said error [upload.wikimedia.org]:
The requested URL returned error: 429
--- failed re-building ‘popdemo.Rmd’

SUMMARY: processing the following file failed:
  ‘popdemo.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘sir.Rmd’ using rmarkdown
--- finished re-building ‘sir.Rmd’

--- re-building ‘survtab_examples.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpnTZ5xb/Rfdc7ac1e3bb6a6': No space left on device

Quitting from survtab_examples.Rmd:204-212 [survtab_cif]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from survtab_examples.Rmd:204-212 [survtab_cif]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'survtab_examples.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘survtab_examples.Rmd’

SUMMARY: processing the following file failed:
  ‘survtab_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘ggspatial’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gap', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aki Jarl Laruson <akijarl@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aki", "Jarl", "Laruson;", "Floyd"),
                      family = "Reed",
                      role = "aut"),
               person(given = c("Aki", "Jarl"),
                      family = "Laruson",
                      role = "cre",
                      email = "akijarl@gmail.com"))
as necessary.
Maintainer: ‘Jiacheng Miao <jiacheng.miao@wisc.edu>’

The Description field contains
  (2023) <arXiv:2311.14220>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'rtracklayer', 'ggbio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Golding",
                    role = c("aut", "cre"),
                    email = "nick.golding.research@gmail.com")
as necessary.
Maintainer: ‘"Mark C. Wheldon" <biostatmark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mark", "C."),
                      family = "Wheldon",
                      role = "aut"),
               person(given = c("\"Mark", "C."),
                      family = "Wheldon\"",
                      role = "cre",
                      email = "biostatmark@gmail.com"))
as necessary.
Packages required but not available:
  'demography', 'ggpubr', 'DescTools', 'rcompanion', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
install log ‘’ does not exist
Maintainer: ‘Guillaume Chapron <gchapron@carnivoreconservation.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guillaume",
                    family = "Chapron",
                    role = c("aut", "cre"),
                    email = "gchapron@carnivoreconservation.org")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Marios Batsaris <m.batsaris@aegean.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marios",
                    family = "Batsaris",
                    role = c("aut", "cre"),
                    email = "m.batsaris@aegean.gr")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘areal-interpolation-comparison.Rmd’ using rmarkdown

Quitting from areal-interpolation-comparison.Rmd:155-186 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'areal'
---
Backtrace:
    ▆
 1. └─base::library(areal)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'areal-interpolation-comparison.Rmd' failed with diagnostics:
there is no package called 'areal'
--- failed re-building ‘areal-interpolation-comparison.Rmd’

SUMMARY: processing the following file failed:
  ‘areal-interpolation-comparison.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpbneguA/filec7fec5a8a66d6': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpbneguA/filec7fec5a8a66d6': No such file or directory
Error in file(con, "r") : cannot open the connection
install log ‘’ does not exist
Package required but not available: ‘timetk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Glenda M. Yenni <glenda@weecology.org>’

Reading Rd files failed with message:
  cannot open the connection
install log ‘’ does not exist
Maintainer: ‘Esam Mahdi <emahdi2012@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Esam",
                    family = "Mahdi",
                    role = c("aut", "cre"),
                    email = "emahdi2012@gmail.com")
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpeots4w/filecc1476ecf3808': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpeots4w/filecc1476ecf3808': No such file or directory
Error in file(con, "r") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpChSA72/Rfc0d9b1249cae4': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
install log ‘’ does not exist
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRXFyuN/filec31df38e91909/IsPartialOrder.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
File ‘poseticDataAnalysis/libs/poseticDataAnalysis.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘dimensionalityReduction.o’, ‘poset.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZmdDYq/filec32f7370c52b': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpZmdDYq/filec32f7370c52b': No such file or directory
Error in file(con, "r") : cannot open the connection
install log ‘’ does not exist
Packages required but not available:
  'parsnip', 'rsample', 'tune', 'workflowsets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘James Robinson <james.em.robinson@gmail.com>’

The Description field contains
  <arXiv:1806.11544>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available:
  'refund', 'cosinor2', 'accelerometry', 'ActCR', 'ActFrag', 'GGIR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYfQurz/ltxcfeee6d703aef/AllContrasts.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Char Leung <charleung@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Char",
                    family = "Leung",
                    role = c("aut", "cre"),
                    email = "charleung@hotmail.fr")
as necessary.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
install log ‘’ does not exist
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘create_matrix.Rd’, ‘equipotential.Rd’, ‘mcpotential.Rd’, ‘n3_poly.Rd’, ‘n3_pt.Rd’, ‘plot_inter.Rd’, ‘potential-package.Rd’, ‘potential.Rd’
Package required but not available: ‘netmeta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = "Leif",
                      family = "Johnson",
                      role = "aut",
                      email = "ltjohnson@google.com"))
as necessary.
Package required but not available: ‘gap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Package required but not available: ‘brms’

Package suggested but not available for checking: ‘INLA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric Kawaguchi <erickawaguchi@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qing",
                      family = "Yang",
                      role = "aut"),
               person(given = c("Wing", "K."),
                      family = "Fung",
                      role = "aut"),
               person(given = "Eric",
                      family = "Kawaguchi",
                      role = c("ctb", "cre"),
                      email = "erickawaguchi@ucla.edu"),
               person(given = "Gang",
                      family = "Li",
                      role = c("aut", "cre")))
as necessary.
Maintainer: ‘Charles Kooperberg <clk@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Kooperberg",
                      role = c("aut", "cre"),
                      email = "clk@fredhutch.org"),
               person(given = "Li",
                      family = "Hsu",
                      role = "aut",
                      email = "lih@fredhutch.org"))
as necessary.
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) coalesce_xy.Rd:22: Lost braces; missing escapes or markup?
    22 | the \code{conflict} argument of {powerjoin}'s join functions. \code{coalesce_xy()} is
       |                                 ^
checkRd: (-1) power_left_join.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{by}{As in {dplyr}, but extended so user can supply a formula or a list
       |                 ^
checkRd: (-1) power_left_join.Rd:79: Lost braces; missing escapes or markup?
    79 | \item{keep}{A boolean for compatibility with {dplyr}, or a value among "left",
       |                                              ^
checkRd: (-1) preprocess_inputs.Rd:37: Lost braces; missing escapes or markup?
    37 | only be used in the \code{x} and \code{y} arguments of {powerjoin} join functions. No
       |                                                        ^
Error(s) in re-building vignettes:
  ...
Error in file(con, "w") : cannot open the connection
Calls: <Anonymous> -> R_runR
Execution halted
Packages required but not available: 'bootnet', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Weiliang Qiu <weiliang.qiu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Weiliang",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "weiliang.qiu@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘FSR.R’ ‘SR.R’ ‘helper_functions_model.R’ ‘plot.powerNLSEM.R’
    ‘smart_search.R’
Maintainer: ‘Daniel E. Weeks <weeks@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "E."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeks@pitt.edu")
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/powerprior.Rcheck/00install.out’ for details.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Detlew Labes <DetlewLabes@gmx.de>’

Found the following (possibly) invalid file URI:
  URI: /C:/Users/dlabes/workspace/PowerTOST/stuff/www.phusewiki.org/docs/2009%20PAPERS/SP04.pdf
    From: inst/doc/Implementation_scaledABE_sims.pdf
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘save.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘FAQ.Rmd’ using rmarkdown
--- finished re-building ‘FAQ.Rmd’

--- re-building ‘extensions.Rmd’ using rmarkdown
--- finished re-building ‘extensions.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘measurement_error.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpcpKZOx/Rfe4a6e71515542': No space left on device

Quitting from measurement_error.Rmd:10-15 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from measurement_error.Rmd:10-15 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'measurement_error.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘measurement_error.Rmd’

--- re-building ‘mplus.Rmd’ using rmarkdown
--- finished re-building ‘mplus.Rmd’

--- re-building ‘mulder_power_2023.Rmd’ using rmarkdown
--- finished re-building ‘mulder_power_2023.Rmd’

SUMMARY: processing the following file failed:
  ‘measurement_error.Rmd’

Error: Vignette re-building failed.
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PowRPriori.Rcheck/00install.out’ for details.
Packages required but not available: 'weights', 'tourr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Hofmeyr <dhofmeyr@sun.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hofmeyr",
                    role = c("aut", "cre"),
                    email = "n.pavlidis@lancaster.ac.uk")
as necessary.
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpMahpww/filecbc7a3afc0257/plotcluster.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘fcm.Rmd’ using rmarkdown

Quitting from fcm.Rmd:44-48 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'factoextra'
---
Backtrace:
    ▆
 1. └─base::library(factoextra)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fcm.Rmd' failed with diagnostics:
there is no package called 'factoextra'
--- failed re-building ‘fcm.Rmd’

--- re-building ‘upfc.Rmd’ using rmarkdown

Quitting from upfc.Rmd:45-49 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'factoextra'
---
Backtrace:
    ▆
 1. └─base::library(factoextra)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'upfc.Rmd' failed with diagnostics:
there is no package called 'factoextra'
--- failed re-building ‘upfc.Rmd’

SUMMARY: processing the following files failed:
  ‘fcm.Rmd’ ‘upfc.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpxGFVGj/ltxcfcd633877f48/crisp.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Seongho Kim <biostatistician.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seongho",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "biostatistician.kim@gmail.com")
as necessary.
Package required but not available: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/Rtmp7ZKVNg/libloc_196_5ed12619f5034c66.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘PPforest-vignette.Rmd’ using rmarkdown

Quitting from PPforest-vignette.Rmd:115-127 [descri]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
there is no package called 'GGally'
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from PPforest-vignette.Rmd:115-127 [descri]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
library(p, character.only = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from PPforest-vignette.Rmd:115-127 [descri]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GGally
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from PPforest-vignette.Rmd:115-127 [descri]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpbEooeZ/RLIBS_64f444fb2b6e7                    , /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PPforest-vignette.Rmd' failed with diagnostics:
there is no package called 'GGally'
--- failed re-building ‘PPforest-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘PPforest-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ben Youngman <b.youngman@exeter.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ben",
                      family = "Youngman",
                      role = c("aut", "cre"),
                      email = "b.youngman@exeter.ac.uk"),
               person(given = "Theo",
                      family = "Economou",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmp0sIbv7/Rd2pdfc3fc27a6fcadd/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘pplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pplot.t.test
> ### Title: Generate p-plot from a series of data points
> ### Aliases: pplot.t.test
> ### Keywords: utilities
> 
> ### ** Examples
> 
> # Show p-plot for significant test (the simulation 
> # has a power of > 88% to return a significant 
> # effect).
> testdata <- rnorm(64, mean = 0.4, sd = 1)
> pplot.t.test(testdata)
Warning in pplot.t.test(testdata) :
  Package 'MBESS' is not installed but required for computing confidence intervals for effect sizes (for plottype >= 2).
Error in pplot.t.test(testdata) : 
Execution halted
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = "Sengwee",
                      family = "Toh",
                      role = "aut",
                      email = "darren_toh@harvardpilgrim.org"))
as necessary.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) ccp_ppm.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{model}{Determines of model fit is such that there are p_{it}s (model=1) or
       |                                                               ^
checkRd: (-1) curve_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) gaussian_ppmx.Rd:143: Lost braces; missing escapes or markup?
   143 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) gaussian_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) ordinal_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) ordinal_ppmx.Rd:147: Lost braces; missing escapes or markup?
   147 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each sujbects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'caret', 'olsrr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jack G. Gambino <jack.gambino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jack", "G."),
                    family = "Gambino",
                    role = c("aut", "cre"),
                    email = "jack.gambino@gmail.com")
as necessary.
Package required but not available: ‘parsnip’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karla Mayra Perez <karla.mayra25@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Karla", "Mayra"),
                      family = "Perez",
                      role = c("aut", "cre"),
                      email = "karla.mayra25@gmail.com"),
               person(given = c("Luis", "E."),
                      family = "Nieto-Barajas",
                      role = "aut"))
as necessary.

The Description field contains
  (2019) <arXiv:1902.06020>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running examples in ‘PPtreeExt-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PPtreeExt_split
> ### Title: Projection Pursuit Classification Tree with Random Variable
> ###   Selection
> ### Aliases: PPtreeExt_split
> ### Keywords: tree
> 
> ### ** Examples
> 
> data(penguins)
> penguins <- na.omit(penguins[, -c(2,7, 8)])
> require(rsample)
Loading required package: rsample
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘rsample’
> penguins_spl <- rsample::initial_split(penguins, strata=species)
Error in loadNamespace(x) : there is no package called ‘rsample’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eun-Kyung",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "lee.eunk@gmail.com")
as necessary.
Maintainer: ‘Guangbao Guo <ggb11111111@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guangbao",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "ggb11111111@163.com"),
               person(given = "Jiarui",
                      family = "Li",
                      role = "aut"))
as necessary.
Checking relative paths failed with message:
  inferior call failed
install log ‘’ does not exist
Running massageExamples to create ‘pracma-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpGHJzHj/filed62b52829f01b/muller.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpgRLKJz/filedbc6f56e55d6d': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpgRLKJz/filedbc6f56e55d6d': No such file or directory
Error in file(con, "r") : cannot open the connection
install log ‘’ does not exist
Packages required but not available: 'np', 'generalCorr', 'ShapleyValue'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabor",
                      family = "Csardi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Sindre",
                      family = "Sorhus",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘gallery.Rmd’ using rmarkdown
--- finished re-building ‘gallery.Rmd’

--- re-building ‘prakriti.Rmd’ using rmarkdown
--- finished re-building ‘prakriti.Rmd’

--- re-building ‘qualitative.Rmd’ using rmarkdown
--- finished re-building ‘qualitative.Rmd’

--- re-building ‘sequential-diverging.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpMOQFps/Rfd0cbb58685825': No space left on device

Quitting from sequential-diverging.Rmd:164-184 [corr]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from sequential-diverging.Rmd:164-184 [corr]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sequential-diverging.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘sequential-diverging.Rmd’

SUMMARY: processing the following file failed:
  ‘sequential-diverging.Rmd’

Error: Vignette re-building failed.
Execution halted
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmptGE6UJ/Rfcc2835e652fc8': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘PRDA.Rmd’ using rmarkdown
--- finished re-building ‘PRDA.Rmd’

--- re-building ‘prospective.Rmd’ using rmarkdown
--- finished re-building ‘prospective.Rmd’

--- re-building ‘retrospective.Rmd’ using rmarkdown

Quitting from retrospective.Rmd:20-24 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'retrospective.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘retrospective.Rmd’

SUMMARY: processing the following file failed:
  ‘retrospective.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'Seurat', 'scater', 'DR.SC', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpYUIWFk/filecca073e3b62c/getPixelsPerLine.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘randomForestSRC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lorenz Walthert <lorenz.walthert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenz",
                    family = "Walthert",
                    role = c("aut", "cre"),
                    email = "lorenz.walthert@icloud.com")
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Maintainer: ‘Takaya Saito <takaya.saito@outlook.com>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpFsoFkP/Rfc80185bdaf792': No space left on device
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'ggiraphExtra', 'modelr'

Package suggested but not available for checking: ‘moonBook’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Suman Kundu <suman_math@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suman",
                      family = "Kundu",
                      role = c("aut", "cre"),
                      email = "suman_math@yahoo.com"),
               person(given = c("Yurii", "S."),
                      family = "Aulchenko",
                      role = "aut"),
               person(given = c("A.", "Cecile", "J.W."),
                      family = "Janssens",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Stanley <dstanley@uoguelph.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Stanley",
                    role = c("aut", "cre"),
                    email = "dstanley@uoguelph.ca")
as necessary.
Package required but not available: ‘MBESS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'glmmTMB', 'car', 'pbkrtest', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marcel Miché <marcel.miche.predictme@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcel",
                    family = "Miché",
                    role = c("aut", "cre"),
                    email = "marcel.miche.predictme@gmail.com")
as necessary.
Packages required but not available: 'loadeR', 'traineR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Orestis Efthimiou <oremiou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Orestis",
                    family = "Efthimiou",
                    role = c("aut", "cre"),
                    email = "oremiou@gmail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Amin Adibi <adibi@alumni.ubc.ca>’

The Description field contains
  <arXiv:2003.00316>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) dev_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:14: Lost braces in \itemize; meant \describe ?
Packages required but not available: 'caret', 'TSPred'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Lepird <jlepird@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lepird",
                    role = c("aut", "cre"),
                    email = "jlepird@alum.mit.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpwRpDeV/Rd2pdfcb05a1b8c655c/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Maintainer: ‘Denis Mollison <denis.mollison@gmail.com>’

The Description field contains
  (2023) <arXiv:2303.15310>, (see also the package manual
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running examples in ‘pref-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: stv.plots
> ### Title: Makes webpage plots of result of an STV election
> ### Aliases: stv.plots
> 
> ### ** Examples
> 
> c99result=stv(c99)
Election: Council99 (Meek STV) - 10 candidates, 343 votes
Those elected, in order of election:  E,  I,  A,  C,  B,  D,  J
> c99plots=stv.plots(c99result)
> nws17wig=stv.wig(nws17)
Election: North West and Central Sutherland (WIG STV) - 8 candidates, 2807 votes
Those elected, in order of election: Kirsteen CURRIE (SNP), Linda MUNRO (SLD), Hugh MORRISON (Ind)
> nws17plots=stv.plots(nws17wig)
Warning in gzfile(file, "wb") :
  cannot open compressed file '/tmp/RtmpHReUpu/North_West_and_Central_Sutherland_wig.rda', probable reason 'No space left on device'
Error in gzfile(file, "wb") : cannot open the connection
Calls: stv.plots -> save -> gzfile
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘add_ordered_path.Rmd’ using rmarkdown

Quitting from add_ordered_path.Rmd:19-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tourr'
---
Backtrace:
    ▆
 1. └─base::library(tourr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'add_ordered_path.Rmd' failed with diagnostics:
there is no package called 'tourr'
--- failed re-building ‘add_ordered_path.Rmd’

--- re-building ‘draw_ternary_plot.Rmd’ using rmarkdown

Quitting from draw_ternary_plot.Rmd:19-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tourr'
---
Backtrace:
    ▆
 1. └─base::library(tourr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'draw_ternary_plot.Rmd' failed with diagnostics:
there is no package called 'tourr'
--- failed re-building ‘draw_ternary_plot.Rmd’

--- re-building ‘transform_raw_data.Rmd’ using rmarkdown
--- finished re-building ‘transform_raw_data.Rmd’

SUMMARY: processing the following files failed:
  ‘add_ordered_path.Rmd’ ‘draw_ternary_plot.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Chin Soon Lim <chinsoon12@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chin", "Soon"),
                    family = "Lim",
                    role = c("aut", "cre"),
                    email = "chinsoon12@hotmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chinsoon12/PreKnitPostHTMLRender
which should likely be
  https://github.com/chinsoon12/PreKnitPostHTMLRender/issues
instead.
Maintainer: ‘Silvia Liverani <liveranis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "I."),
                      family = "Hastie",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Liverani",
                      role = c("aut", "cre"),
                      email = "liveranis@gmail.com"),
               person(given = c("Sylvia", "Richardson", "with", "contributions", "from", "Aurore", "J."),
                      family = "Lavigne",
                      role = "aut"),
               person(given = "Lucy",
                      family = "Leigh",
                      role = "aut"),
               person(given = "Lamiae",
                      family = "Azizi",
                      role = "aut"),
               person(given = "Xi",
                      family = "Liu",
                      role = "aut"),
               person(given = "Ruizhu",
                      family = "Huang",
                      role = "aut"),
               person(given = "Austin",
                      family = "Gratton",
                      role = "aut"),
               person(given = "Wei",
                      family = "Jing",
                      role = "aut"))
as necessary.
Maintainer: ‘Swamiji Pravedson <swamiji.pravedson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Swamiji",
                    family = "Pravedson",
                    role = c("aut", "cre"),
                    email = "swamiji.pravedson@gmail.com")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Josef Frank <josef.frank@gmx.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Frank",
                    role = c("aut", "cre"),
                    email = "josef.frank@gmx.ch")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Missingness.Rmd’ using rmarkdown

Quitting from Missingness.Rmd:35-40 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'mice'
---
Backtrace:
    ▆
 1. └─base::library("mice")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Missingness.Rmd' failed with diagnostics:
there is no package called 'mice'
--- failed re-building ‘Missingness.Rmd’

--- re-building ‘Tuning.Rmd’ using rmarkdown

Quitting from Tuning.Rmd:44-49 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'caret'
---
Backtrace:
    ▆
 1. └─base::library("caret")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Tuning.Rmd' failed with diagnostics:
there is no package called 'caret'
--- failed re-building ‘Tuning.Rmd’

--- re-building ‘relaxed.Rmd’ using rmarkdown
--- finished re-building ‘relaxed.Rmd’

--- re-building ‘speed.Rmd’ using rmarkdown
--- finished re-building ‘speed.Rmd’

SUMMARY: processing the following files failed:
  ‘Missingness.Rmd’ ‘Tuning.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp09e2pP/ltxe696517ff4c43/gpe.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘presens-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpJ61qC3/filed1b8d2f7472e1/last_o2.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Packages required but not available:
  'flextable', 'officer', 'janitor', 'rvg', 'framecleaner'

Package suggested but not available for checking: ‘badger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpWCNupz/filed1ba016c0731c/prec_riskratio.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘presize-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpnUzY7x/filed22347ce45925/sensspec.R': No space left on device
Execution halted
 NONE
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [11s/11s] OK
Maintainer: ‘Gustavo Soutinho <gustavosoutinho@sapo.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gustavo",
                      family = "Soutinho",
                      role = c("aut", "cre"),
                      email = "gustavosoutinho@sapo.pt"),
               person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Oliveira",
                      role = "aut"))
as necessary.
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpPvFQv6/Rfcfdc179c910d': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Fatal error: cannot create 'R_TempDir'
sh: 1: cannot create /tmp/RtmpPmoQ7a/xshelld29fe447b23d0: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpPmoQ7a/xshelld29fe447b23d0': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Dewey Dunnington <dewey@fishandwhistle.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dewey",
                    family = "Dunnington",
                    role = c("aut", "cre"),
                    email = "dewey@fishandwhistle.net")
as necessary.
Maintainer: ‘Brecht Devleesschauwer <brechtdv@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘estimate_risk.Rd’
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Florian Laroumagne <florian.laroumagne@prevision.io>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ankur",
                    family = "Chakravarthy",
                    role = c("aut", "cre"),
                    email = "ankur.chakravarthy.10@ucl.ac.uk")
as necessary.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘interpolation-in-small-samples.Rmd’ using rmarkdown
--- finished re-building ‘interpolation-in-small-samples.Rmd’

--- re-building ‘visualizing-psm-results.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpQ57HrX/Rfdd94f4893c7fa': No space left on device

Quitting from visualizing-psm-results.Rmd:189-275 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from visualizing-psm-results.Rmd:189-275 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'visualizing-psm-results.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘visualizing-psm-results.Rmd’

--- re-building ‘weighted-data.Rmd’ using rmarkdown
--- finished re-building ‘weighted-data.Rmd’

SUMMARY: processing the following file failed:
  ‘visualizing-psm-results.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘David Schruth <data@anthropoidea.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Schruth",
                      role = "cre",
                      email = "data@anthropoidea.org"),
               person(given = "Marc",
                      family = "Myers",
                      role = "ctb"),
               person(given = "Noel",
                      family = "Rowe",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Florian Privé <florian.prive.21@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpiGvgJz/Rfd28c36e864e9e': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ziwei Zhu <ziweiz@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziwei",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "ziweiz@umich.edu"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  component analysis with heterogeneous missingness. <arXiv:1906.12125>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (HenrikBengtsson), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
  Authors@R: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (github: HenrikBengtsson), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
Package required but not available: ‘tmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) findbeta.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{lower.v}{logical, if TRUE the specified percentile.value is the upper limit for the mean (or the median or the mode) at the specified confidence level (percentile). If {FALSE} the specified percentile.value is the lower limit for the mean (or the median or the mode) at the specified confidence level (percentile). The default is FALSE.}
       |                                                                                                                                                                               ^
Packages required but not available: 'caret', 'cvms', 'glmSparseNet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Roman Hornung <hornung@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Klau",
                      role = "aut"),
               person(given = "Roman",
                      family = "Hornung",
                      role = c("aut", "cre"),
                      email = "hornung@ibe.med.uni-muenchen.de"),
               person(given = "Alina",
                      family = "Bauer",
                      role = "aut"),
               person(given = "Jonas",
                      family = "Hagenberg",
                      role = "aut"))
as necessary.
Packages required but not available: 'DiagrammeR', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

Package suggested but not available for checking: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tammo Krueger <tammokrueger@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tammo",
                      family = "Krueger",
                      role = c("aut", "cre"),
                      email = "tammokrueger@googlemail.com"),
               person(given = "Nicole",
                      family = "Kraemer",
                      role = "aut"))
as necessary.
Maintainer: ‘Prithul Chaturvedi <prithulc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prithul",
                    family = "Chaturvedi",
                    role = c("aut", "cre"),
                    email = "prithulc@gmail.com")
as necessary.
Maintainer: ‘Staal A. Vinterbo <Staal.Vinterbo@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Staal", "A."),
                    family = "Vinterbo",
                    role = c("aut", "cre"),
                    email = "Staal.Vinterbo@ntnu.no")
as necessary.
Packages required but not available: 'Hmisc', 'DescTools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tune', 'workflows'

Packages suggested but not available for checking:
  'parsnip', 'recipes', 'rsample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jim Albert <albert@bgsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jim",
                    family = "Albert",
                    role = c("aut", "cre"),
                    email = "albert@bgsu.edu")
as necessary.
Package required but not available: ‘TmCalculator’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander McLain <mclaina@mailbox.sc.edu>’

The Description field contains
  Zgodic, and Bondell (2022) <arXiv:2209.08139>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tim Liao <tfliao@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Liao",
                    role = c("aut", "cre"),
                    email = "tfliao@illinois.edu")
as necessary.
Maintainer: ‘Giuliana Cortese <gcortese@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giuliana",
                    family = "Cortese",
                    role = c("aut", "cre"),
                    email = "gcortese@stat.unipd.it")
as necessary.
Maintainer: ‘Rishabh Gupta <rishabh.uk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rishabh",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "rishabh.uk@gmail.com"),
               person(given = c("Nicholas", "J."),
                      family = "Matzke",
                      role = "aut"))
as necessary.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Unexported objects imported by ':::' calls:
  ‘bupaR:::allowed_lifecycles’ ‘bupaR:::apply_grouped_fun’
  See the note in ?`:::` about the use of this operator.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'DiagrammeR', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘gert.janssenswillen@uhasselt.be <gert.janssenswillen@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gert",
                      family = "Janssenswillen",
                      role = "aut"),
               person(family = "gert.janssenswillen@uhasselt.be",
                      role = "cre",
                      email = "gert.janssenswillen@uhasselt.be"))
as necessary.
Packages required but not available: 'keras', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eric Coissac <eric.coissac@metabarcoding.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eric",
                      family = "Coissac",
                      role = c("aut", "cre"),
                      email = "eric.coissac@metabarcoding.org"),
               person(given = "Christelle",
                      family = "Gonindard-Melodelima",
                      role = "aut"))
as necessary.
Running massageExamples to create ‘pROC-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp2ZCQq3/file6a8ee3fa1153d/ci.coords.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Gabriele Rovigatti <gabriele.rovigatti@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Rovigatti",
                    role = c("aut", "cre"),
                    email = "gabriele.rovigatti@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpXO8OyV/Rfd965c1d9262ee': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘prodlim-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geom_prodlim
> ### Title: Product-limit geoms for survival and competing risks curves
> ### Aliases: geom_prodlim
> 
> ### ** Examples
> 
> library(riskRegression)
Error in library(riskRegression) : 
  there is no package called ‘riskRegression’
Execution halted
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘fareprim.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘fisher.Rd’:
    https://doi.org/10.1007/BF00158354
  File ‘hicksmoorsteen.Rd’:
    https://doi.org/10.1111/j.1467-9957.2010.02169.x
    https://doi.org/10.1111/j.1467-8489.2010.00512.x
  File ‘lowe.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘usagri.Rd’:
    https://doi.org/10.2307/1244458
    https://doi.org/10.1111/j.0002-9092.2004.00683.x
checkRd: (-1) paasche.Rd:91: Lost braces
    91 |     \code{OSME} \tab Output-oriented scale-mix efficiency score \emph{(code{orientation = "out"})}\cr
       |                                                                            ^
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpaNR1Ql/filede7a31b942c84': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpaNR1Ql/filede7a31b942c84': No such file or directory
Error in file(con, "r") : cannot open the connection
Packages required but not available: 'DR.SC', 'Seurat'

Packages suggested but not available for checking:
  'PRECAST', 'biomaRt', 'scater'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpSu5hrf/ltxe23e61e3f313/coordProf_UQ.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘test_pprof.Rd’, ‘to_pprof.Rd’, ‘to_rprof.Rd’
Package required but not available: ‘ChainLadder’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christopher David Desjardins <cddesjardins@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Okan",
                      family = "Bulut",
                      role = "aut",
                      email = "okanbulut84@gmail.com"),
               person(given = c("Christopher", "David"),
                      family = "Desjardins",
                      role = c("aut", "cre"),
                      email = "cddesjardins@gmail.com"))
as necessary.
checkRd: (-1) PS.Rd:9: Lost braces
     9 |                 \item{CD}{}{Character disorder scale score}
       |                            ^
cannot open the connection
cannot open the connection
problems found in ‘profiler-package.Rd’, ‘summary.critpat.Rd’
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"),
               person(given = "Riad",
                      family = "Jarjour",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: valgrind.org
    From: inst/doc/proftools.pdf
checkRd: (-1) proftools-package.Rd:40: Lost braces
    40 |   by the code{kcachegrind} program available on some operating
       |              ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘progressr-01-intro.md’ using selfonly
--- finished re-building ‘progressr-01-intro.md’

--- re-building ‘progressr-11-handlers.md’ using selfonly
--- finished re-building ‘progressr-11-handlers.md’

--- re-building ‘progressr-21-map-reduce.md’ using selfonly
--- finished re-building ‘progressr-21-map-reduce.md’

--- re-building ‘progressr-22-parallel-processing.md’ using selfonly
--- finished re-building ‘progressr-22-parallel-processing.md’

--- re-building ‘progressr-25-replace-cli-with-progressr.md’ using selfonly
Warning in readLines(file) :
  incomplete final line found on 'progressr-25-replace-cli-with-progressr.md'
--- finished re-building ‘progressr-25-replace-cli-with-progressr.md’

--- re-building ‘progressr-29-debug.md’ using selfonly
--- finished re-building ‘progressr-29-debug.md’

--- re-building ‘progressr-31-knitr.md’ using selfonly
Warning in readLines(file) :
  incomplete final line found on 'progressr-31-knitr.md'
--- finished re-building ‘progressr-31-knitr.md’

Fatal error: cannot create 'R_TempDir'
SUMMARY: processing the following file failed:
  ‘progressr-91-appendix.md’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flextable', 'haven', 'officer', 'plotly', 'semPlot', 'semptools',
  'tidyLPA', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpuUwVVH/filedbdb93e42ae4d/projects_author.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
checkRd: (-1) prolific_prescreener.Rd:254: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_prescreener.Rd:255: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:243: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:244: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Francesco Vidoli <fvidoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Resce",
                      role = "aut"),
               person(given = "Menelaos",
                      family = "Tasiou",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Vidoli",
                      role = c("aut", "cre"),
                      email = "fvidoli@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Austria.Rd’:
    https://doi.org/10.1016/j.jclepro.2019.02.115
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpdUl17t/Rfd922c1dfae127': No space left on device
Error in file(open = "w+") : cannot open the connection
Execution halted
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘otel.Rd’, ‘pipes.Rd’, ‘promise.Rd’, ‘promise_all.Rd’, ‘promise_map.Rd’, ‘promise_reduce.Rd’, ‘promise_resolve.Rd’, ‘promises-deprecated.Rd’, ‘promises-package.Rd’, ‘reexports.Rd’, ‘resolve.Rd’, ‘then.Rd’, ‘with_promise_domain.Rd’
Running massageExamples to create ‘promises-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpFlQ6AY/filedcb56576a57b8/promise_all.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Paul E. Promote <promotedev@alteryx.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "E."),
                    family = "Promote",
                    role = c("aut", "cre"),
                    email = "promotedev@alteryx.com")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘complete_chat.R’ ‘complete_prompt.R’ ‘format_prompt.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_url.R’
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "Michael", "O"),
                      family = "Ranola",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Lange",
                      role = "aut"),
               person(given = "Steve",
                      family = "Horvath",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Maintainer: ‘Maria Alvarez <maria.alvarez@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Alvarez",
                      role = c("aut", "cre"),
                      email = "maria.alvarez@uvigo.es"),
               person(given = "Javier",
                      family = "Roca-Pardinas",
                      role = "aut"))
as necessary.
Maintainer: ‘Daan Seynaeve <daan.seynaeve@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Daan",
                      family = "Seynaeve",
                      role = c("aut", "cre"),
                      email = "daan.seynaeve@openanalytics.eu"),
               person(given = c("based", "on", "read.dcf", "by", "R", "Core", "Development"),
                      family = "Team",
                      role = "aut"))
as necessary.
Maintainer: ‘Osama Mahmoud <ofamah@essex.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osama",
                      family = "Mahmoud",
                      role = c("aut", "cre"),
                      email = "ofamah@essex.ac.uk"),
               person(given = "Andrew",
                      family = "Harrison",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Zardad",
                      family = "Khan",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Travis Loux <travis.loux@slu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Travis",
                    family = "Loux",
                    role = c("aut", "cre"),
                    email = "travis.loux@slu.edu")
as necessary.
Maintainer: ‘Nadine Fischoff <nadine.khattak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nadine",
                    family = "Fischoff",
                    role = c("aut", "cre"),
                    email = "nadine.khattak@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘getBills.Rd’:
    \keyword{api,}
    \keyword{congress,}
    \keyword{propublica,}
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Xi", "LUO", "with", "contributions", "from", "Dylan"),
                      family = "Small",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Vikaas",
                      family = "Sohal",
                      role = "aut"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                  ^
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                                      ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nba_data.R’ ‘nba_data.Rd’ ‘nfl_data.R’ ‘nhl_data.R’ ‘nhl_data.Rd’
Maintainer: ‘Arthur Leroy <arthur.leroy.pro@gmail.com>’

The Description field contains
  <arXiv:2307.08975>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘imputeTS’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Przemysław Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  available at http://biecek.pl/BetaBit/Warsaw.  It's a part of Beta and
  http://biecek.pl/BetaBit.
Please enclose URLs in angle brackets (<...>).
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.
checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^
Packages required but not available: 'janitor', 'plotly'

Packages suggested but not available for checking: 'heatmaply', 'drc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christian Panse <cp@fgcz.ethz.ch>’

Found the following (possibly) invalid file URI:
  URI: {cp,jg}@fgcz.ethz.ch
    From: inst/doc/poster.pdf
checkRd: (-1) pr_stem_sentences.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capital letters 
       |                       ^
checkRd: (-1) pr_stem_words.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capitals letters 
       |                       ^
checkRd: (-1) proust_sentiments.Rd:7: Lost braces; missing escapes or markup?
     7 | See the {rfeel} package now: http://github.com/ColinFay/rfeel}
       |         ^
checkRd: (-1) proust_sentiments.Rd:20: Lost braces; missing escapes or markup?
    20 | See the {rfeel} package now: http://github.com/ColinFay/rfeel
       |         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_proverbs.R’
Maintainer: ‘Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yi Zhao <zhayi@umich.edu>’

The Description field contains
  <arXiv:2105.03993>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘M. S. Islam <shahed-sta@sust.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "S."),
                    family = "Islam",
                    role = c("aut", "cre"),
                    email = "shahed-sta@sust.edu")
as necessary.
Package required but not available: ‘TriMatch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/psBayesborrow.Rcheck/00install.out’ for details.
Maintainer: ‘Kyu Ha Lee <klee@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee@hsph.harvard.edu"),
               person(given = "Sounak",
                      family = "Chakraborty",
                      role = "aut"),
               person(given = "Harrison",
                      family = "Reeder",
                      role = "aut"),
               person(given = c("", "Jianguo"),
                      family = "Sun",
                      role = "aut",
                      comment = "Tony"))
as necessary.
Packages required but not available: 'GGally', 'riskRegression'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpX17Nzk/fileee79a3d2b47bd': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpX17Nzk/fileee79a3d2b47bd': No such file or directory
Error in file(con, "r") : cannot open the connection
Running ‘testthat.R’ [45s/318s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(psborrow)
  > 
  > test_check("psborrow")
  Fatal error: creating temporary file for '-e' failed
  Saving _problems/test-parallel-84.R
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 128 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • !Sys.getenv("RUN_ALL_TESTS") == TRUE is TRUE (1): 'test-quiet.R:115:5'
  • {flexsurv} is not installed. (1): 'test-apply_mcmc.R:5:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-parallel.R:75:9'): parallisation works as expected ─────────────
  Error in `makePSOCKcluster(names = spec, ...)`: Cluster setup failed. 1 worker of 2 failed to connect.
  Backtrace:
      ▆
   1. ├─base::suppressMessages(...) at test-parallel.R:6:5
   2. │ └─base::withCallingHandlers(...)
   3. └─psborrow::run_mcmc_p(...) at test-parallel.R:75:9
   4.   └─parallel::makeCluster(n.cores)
   5.     └─parallel::makePSOCKcluster(names = spec, ...)
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 128 ]
  Error:
  ! Test failures.
  Warning message:
  In for (i in seq_len(n)) { :
    closing unused connection 5 (<-localhost:11732)
  Execution halted
Package required but not available: ‘psc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘pscl-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hurdletest
> ### Title: Testing for the Presence of a Zero Hurdle
> ### Aliases: hurdletest
> ### Keywords: regression
> 
> ### ** Examples
> 
> data("bioChemists", package = "pscl")
> fm <- hurdle(art ~ ., data = bioChemists, dist = "negbin", zero = "negbin")
> hurdletest(fm)
Loading required namespace: car
Failed with error:  ‘there is no package called ‘car’’
Error in hurdletest(fm) : requireNamespace("car") is not TRUE
Calls: hurdletest -> stopifnot
Execution halted
Note: skipping ‘countreg.Rnw’ due to unavailable dependencies: 'car'
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpC1IW1x/ltxe67b44b52206b/predict.hurdle.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘JWileymisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'flexsurv', 'survminer', 'gtsummary', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) qpc.Rd:43: Lost braces
    43 | S{Sulewski, P. (2020). \emph{Normal Distribution with Plasticizing Component,} Communications in Statistics ? Theory and Method 51(11), 3806-3835.}
       |  ^
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pseudohouseholds.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘pseudohouseholds.Rmd’ using rmarkdown

Quitting from pseudohouseholds.Rmd:42-52 [set]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggspatial'
---
Backtrace:
    ▆
 1. └─base::library(ggspatial)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pseudohouseholds.Rmd' failed with diagnostics:
there is no package called 'ggspatial'
--- failed re-building ‘pseudohouseholds.Rmd’

SUMMARY: processing the following file failed:
  ‘pseudohouseholds.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rms', 'rsample', 'mice', 'mitml', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Neeraj Bokde <neerajdhanraj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neeraj",
                      family = "Bokde",
                      role = c("aut", "cre"),
                      email = "neerajdhanraj@gmail.com"),
               person(given = "Gualberto",
                      family = "Asencio-Cortes",
                      role = "aut"),
               person(given = "Francisco",
                      family = "Martinez-Alvarez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data1.Rd:14: Lost braces
    14 | The data set from {AbouRizk, S.M., Halpin, D.W., Wilson, J. R. (1994). \emph{Fitting beta distributions based on sample data.} Journal of Construction Engineering and Management 120(2), 288–305.}
       |                   ^
checkRd: (-1) data2.Rd:14: Lost braces; missing escapes or markup?
    14 | The data set presents the height of 99 five-year-old British boys in cm downloaded from {http://www.mas.ncl.ac.uk/njnsm/medfac/docs/intro.pdf.}
       |                                                                                         ^
Packages required but not available: 'intamap', 'automap'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Oleg Sysoev <Oleg.Sysoev@liu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oleg",
                      family = "Sysoev",
                      role = c("aut", "cre"),
                      email = "oleg.sysoev@liu.se"),
               person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = "aut"),
               person(given = c("Katarina", "Ekholm"),
                      family = "Selling",
                      role = "aut"),
               person(given = "Lotta",
                      family = "Ekstrom",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Shuyi Qiu <shuyi.qiu@duke.edu>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘asciiSetupReader’

Package suggested but not available for checking: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) table1.Rd:14: Lost braces
    14 | The first data set from {Sulewski, P. (2017) \emph{A new test for independence in 2x2 contingency tables,} Acta Universitatis Lodziensis. Folia Oeconomica, 4(330), 55–75}
       |                         ^
checkRd: (-1) table3.Rd:14: Lost braces
    14 | The third data set from {Sulewski, P. (2021). \emph{Logarithmic Minimum Test for Independence in Three Way Con-tingency Table of Small Sizes.} Journal of Statistical Computation and Simulation 91(13), 2780-2799}
       |                         ^
Packages required but not available: 'admiral', 'flexsurv'

Package suggested but not available for checking: ‘HMDHFDplus’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpfyZuLd/Rfe6a324c8709f9': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Claus Bendtsen <papyrus.bendtsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claus",
                      family = "Bendtsen.",
                      role = "aut",
                      email = "papyrus.bendtsen@gmail.com"),
               person(given = "Claus",
                      family = "Bendtsen",
                      role = "cre",
                      email = "papyrus.bendtsen@gmail.com"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Jim", "Ramsey.", "R", "port", "by", "Brian", "Ripley"),
                      family = "<Brian.Ripley@R-project.org>.",
                      role = "aut",
                      email = "Brian.Ripley@R-project.org"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "cre",
                      email = "Brian.Ripley@R-project.org"))
as necessary.
Maintainer: ‘Andre M. de Roos <A.M.deRoos@uva.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/psrwe.Rcheck/00install.out’ for details.
Maintainer: ‘Haiyan Wang <hwang@ksu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luann", "C."),
                      family = "Jung",
                      role = "aut"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "hwang@ksu.edu"),
               person(given = "Diego",
                      family = "Maldonado",
                      role = "aut"),
               person(given = "Sharad",
                      family = "Silwal",
                      role = "aut"),
               person(given = "Siti",
                      family = "Tolos",
                      role = "aut"),
               person(given = "Suojin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘summary.riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testConstancy.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testEquality.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Qing",
                      family = "Fei",
                      role = "aut"))
as necessary.
Package required but not available: ‘GSVA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Blondeau Da Silva Stephane <blondeaudasilva@xlim.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane.",
                      role = "aut"),
               person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane",
                      role = "cre",
                      email = "blondeaudasilva@xlim.fr"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Huzhang Mao <huzhangmao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huzhang",
                      family = "Mao",
                      role = c("aut", "cre"),
                      email = "huzhangmao@gmail.com"),
               person(given = "Liang",
                      family = "Li",
                      role = "aut",
                      email = "LLi15@mdanderson.org"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .......Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpkGniGX/file10939c72cc7ecf': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpkGniGX/file10939c72cc7ecf': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
Package required but not available: ‘qgraph’

Packages suggested but not available for checking:
  'semPlot', 'graphicalVAR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘psycho-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpXTvwjP/filee919742f22f2c', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpXTvwjP/filee919742f22f2c/assess.R': No such file or directory
Execution halted
 NONE
Running massageExamples to create ‘psych-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpwU28pC/filefcaf934dbf806/outlier.R': No space left on device
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/psychReport.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp0ekulI/filee4c6712040d2d/cities.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'bruceR', 'qgraph'

Package suggested but not available for checking: ‘text’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ken Knoblauch <ken.knoblauch@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Knoblauch",
                      role = "aut"),
               person(given = "Ken",
                      family = "Knoblauch",
                      role = "cre",
                      email = "ken.knoblauch@inserm.fr"))
as necessary.
Maintainer: ‘Didier G. Leibovici <GeotRYcs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Didier", "G."),
                    family = "Leibovici",
                    role = c("aut", "cre"),
                    email = "doi:10.18637/jss.v034.i10",
                    comment = "2010")
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = c("Alina", "Levine", "&", "Justin"),
                      family = "Bleich",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PTE.Rd’:
    \keyword{medicine,}
checkRd: (-1) PTE_bootstrap_inference.Rd:39-42: Lost braces
    39 |                                                         continuous = function(Xytrain){ #defalt is OLS regression
       |                                                                                       ^
checkRd: (-1) PTE_bootstrap_inference.Rd:43-47: Lost braces
    43 |                                                         incidence = function(Xytrain){ #default is logistic regression
       |                                                                                      ^
checkRd: (-1) PTE_bootstrap_inference.Rd:48-52: Lost braces
    48 |                                                         survival = function(Xytrain){ #default is Weibull regression
       |                                                                                     ^
checkRd: (-1) PTE_bootstrap_inference.Rd:66-68: Lost braces
    66 |                                         function(mod, Xyleftout){
       |                                                                 ^
checkRd: (-1) PTE_bootstrap_inference.Rd:74-77: Lost braces
    74 |                                         function(results, indices_1_1, indices_0_0, indices_0_1, indices_1_0){
       |                                                                                                              ^
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

The Description field contains
  available in Wang et al (2022) <arXiv:2209.08414>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'BMisc', 'DRDID'

Package suggested but not available for checking: ‘did’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jose M. Maisog <bravas02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "M."),
                      family = "Maisog",
                      role = c("aut", "cre"),
                      email = "bravas02@gmail.com"),
               person(given = "Yuan",
                      family = "Wang",
                      role = "aut"),
               person(given = "George",
                      family = "Luta",
                      role = "aut"),
               person(given = "Jianfei",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter DeWitt <peter.dewitt@cuanschutz.edu>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpIlWOp5/Rf60e66369a180': No space left on device
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mirko Signorelli <msignorelli.rpackages@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpFhf1NF/ltxf4e977eb4ef47/nyc_bor.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘modelr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpAhxOl1/Rfe4c5b9b2228b': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .try_quietly -> file
Execution halted
Running massageExamples to create ‘ptvalue-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpM45VDH/filee5ec818c7e5ef/ptvalue.R': No space left on device
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PTXQC.Rcheck/00install.out’ for details.
Package required but not available: ‘CompoundDb’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gtsummary', 'car', 'jtools', 'sjmisc'

Packages suggested but not available for checking:
  'broom.helpers', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’

The Description field contains
  <arXiv:1911.12445>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running examples in ‘Publish-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: splinePlot.lrm
> ### Title: Plot predictions of logistic regression
> ### Aliases: splinePlot.lrm
> 
> ### ** Examples
> 
> data(Diabetes)
> Diabetes$hypertension=  1*(Diabetes$bp.1s>140)
> library(rms)
Error in library(rms) : there is no package called ‘rms’
Execution halted
Error in file(open = "w+", encoding = "UTF-8") : 
  cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly
Execution halted
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQdgm5k/filee989e63182485/getabs.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
checkRd: (-1) plotWordCloud.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{PubMed wordcloud using function 'wordcloud' of package {wordcloud}}
       |                                                               ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                  ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                                           ^
Package required but not available: ‘rstatix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tong",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "hetong007@gmail.com")
as necessary.
Packages required but not available: 'fda', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luis", "J."),
                    family = "Villanueva-Rivera",
                    role = c("aut", "cre"),
                    email = "ljvillanueva@coquipr.com")
as necessary.

The Description field contains
  (http://ljvillanueva.github.io/pumilio/).
Please enclose URLs in angle brackets (<...>).
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘PowerUpR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PupilPre.Rcheck/00install.out’ for details.
Package required but not available: ‘colordistance’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>’

The BugReports field in DESCRIPTION has
  https://github.com/richelbilderbeek/pureseqtmr/
which should likely be
  https://github.com/richelbilderbeek/pureseqtmr/issues
instead.
cannot open the connection
cannot open the connection
problems found in ‘atlas.Rd’, ‘check_Ne.Rd’
Error(s) in re-building vignettes:
  ...
Fatal error: cannot create 'R_TempDir'
--- re-building ‘purgeR-tutorial.Rmd’ using rmarkdown
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Computing opportunity of purging values... 
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

Quitting from purgeR-tutorial.Rmd:441-451 [ggraph]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggraph'
---
Backtrace:
    ▆
 1. └─base::library("ggraph")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'purgeR-tutorial.Rmd' failed with diagnostics:
there is no package called 'ggraph'
--- failed re-building ‘purgeR-tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘ip.Rmd’ ‘purgeR-tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpIG7S5G/ltxf310c10644220/ip_Fij.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Philip D. Waggoner <philip.waggoner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "philip.waggoner@gmail.com")
as necessary.
Maintainer: ‘Hadley Wickham <hadley@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dcmle’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vygantas Butkus <Vygantas.Butkus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vygantas",
                    family = "Butkus",
                    role = c("aut", "cre"),
                    email = "vygantas.butkus@gmail.com")
as necessary.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ryota Suzuki <suzuki@ef-prime.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ryota",
                      family = "Suzuki",
                      role = c("aut", "cre"),
                      email = "suzuki@ef-prime.com"),
               person(given = "Yoshikazu",
                      family = "Terada",
                      role = "aut",
                      email = "terada@sigmath.es.osaka-u.ac.jp"),
               person(given = "Hidetoshi",
                      family = "Shimodaira",
                      role = "aut",
                      email = "shimo@i.kyoto-u.ac.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘da.Rd’ ‘da_object_oriented_functions.R’
    ‘higher_level_disprop_analysis.R’ ‘lower_level_disprop_analysis.R’
    ‘print.da.Rd’
Running massageExamples to create ‘pvldcurve-Ex.R’ failed
Fatal error: cannot create 'R_TempDir'
 NONE
cannot open the connection
checkRd: (-1) pvlrt.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
checkRd: (-1) r_contin_table_zip.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
problem found in ‘lrt_zi_poisson.Rd’
Maintainer: ‘Thiago Santos <thiago.santos@ufvjm.edu.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thiago",
                    family = "Santos",
                    role = c("aut", "cre"),
                    email = "thiago.santos@ufvjm.edu.br")
as necessary.
Package required but not available: ‘bibliometrix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'phia', 'afex', 'MBESS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpVxuXRQ/filef17813586f0d0': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpVxuXRQ/filef17813586f0d0': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp1tgEEP/ltxf4a8c2f3d2615/utils.attrition.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
prepare_Rd: cannot open file '/tmp/Rtmp6HI5R6/Rfe8c80b738a35': No space left on device
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt8.0.Rd’:
    http://dx.doi.org/10.15141/S5159X
    http://dx.doi.org/10.1016/j.jdeveco.2012.10.001
  File ‘pwt8.1.Rd’:
    http://dx.doi.org/10.15141/S5NP4S
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt9.0.Rd’:
    https://doi.org/10.15141/S5J01T
  File ‘pwt9.1.Rd’:
    https://doi.org/10.15141/S50T0R
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpDphmDN/fileeee326f28895b/px_database.px.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running ‘testthat.R’ [108s/64s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(pxmake)
  > 
  > test_check("pxmake")
  Starting 2 test processes.
  Saving _problems/test-14-classification-robust-6.R
  Saving _problems/test-51-pxsave-40.R
  Error in file(file, mode) : cannot open the connection
  Calls: test_check ... FUN -> <Anonymous> -> rs_call -> save_function_to_temp
  Execution halted
Encountered the following conversion/validation errors:
cannot open the connection
Error: inferior call failed
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpPZhBye/ltxee8a3441c577e/pxe_pxobj_at_position.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘ROCnReg’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Tyler Burleigh [aut] (https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
  Authors@R: ‘Tyler Burleigh [aut] (twitter: https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (ORCID: <https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Minato Nakazawa <minato-nakazawa@umin.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Minato",
                    family = "Nakazawa",
                    role = c("aut", "cre"),
                    email = "minato-nakazawa@umin.net")
as necessary.
Packages required but not available: 'dbplyr', 'sparklyr'

Packages suggested but not available for checking:
  'rsample', 'workflows', 'tune', 'parsnip', 'recipes'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Tomasz",
                      family = "Zadlo",
                      role = "aut"))
as necessary.
checkRd: (-1) srswrRe.Rd:10: Lost braces
    10 |   \item{listRanef}{{\emph{ranef(model)}} object where {\emph{model}} is an { \emph{lmer}} object.}
       |                                                                            ^
Output for data("invData", package = "qape"):
  Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘qape-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp6LOfzd/filef6f87784ebf90/invData.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang@wpi.edu")
as necessary.

The Description field contains
  <arXiv:2005.00905>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpbSBFLF/ltxf22cd17118b92/pi_QAR_perc.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Ayush Agarwal<ayush.agarwal50@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ayush",
                      family = "Agarwal",
                      role = c("aut", "cre"),
                      email = "ayush.agarwal50@gmail.com"),
               person(given = "Dootika",
                      family = "Vats",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
Fatal error: cannot create 'R_TempDir'
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘qb_records.R’
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmplmXlxa/Rff17b323a037db': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpwsSOZ5/filef48213a8a38c2': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpwsSOZ5/filef48213a8a38c2': No such file or directory
Error in file(con, "r") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpgiYz2A/ltxf4baa49abf384/qcbaIris.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Luca Scrucca <luca.scrucca@unipg.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘qcc_a_quick_tour.Rmd’ using rmarkdown

Quitting from qcc_a_quick_tour.Rmd:59-69 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plot.new()`:
! could not open file '/tmp/Rtmpadfkr5/filef21de18340b6d'
---
Backtrace:
    ▆
 1. └─qcc::qcc(...)
 2.   ├─base::plot(object, ...)
 3.   └─qcc::plot.qcc(object, ...)
 4.     ├─base::plot(...)
 5.     └─graphics::plot.default(...)
 6.       └─graphics::plot.new()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qcc_a_quick_tour.Rmd' failed with diagnostics:
could not open file '/tmp/Rtmpadfkr5/filef21de18340b6d'
--- failed re-building ‘qcc_a_quick_tour.Rmd’

SUMMARY: processing the following file failed:
  ‘qcc_a_quick_tour.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Leanne", "K."),
                      family = "Kupers",
                      role = "aut"),
               person(given = "Ilja",
                      family = "Nolte",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Ilja", "M."),
                      family = "Nolte",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘cSEM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alireza Lorzadeh <alorzadeh@bcgsc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alireza",
                    family = "Lorzadeh",
                    role = c("aut", "cre"),
                    email = "alorzadeh@bcgsc.ca")
as necessary.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tinniam V Ganesh<tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Xuejun Ma <yinuoyumi@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuejun",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "yinuoyumi@163.com"),
               person(given = "Jingxiao",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Jingke",
                      family = "Zhou",
                      role = "aut"))
as necessary.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpF6G3Ux/ltxeec837eb6fc49/print.qcv.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tyler",
                    family = "Rinker",
                    role = c("aut", "cre"),
                    email = "tyler.rinker@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘escape.Rd’, ‘explain.Rd’, ‘grab.Rd’, ‘group.Rd’, ‘group_or.Rd’, ‘is.regex.Rd’, ‘pastex.Rd’, ‘print.explain.Rd’
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘David Jungreis <dbjungreis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Jungreis",
                      role = c("aut", "cre"),
                      email = "dbjungreis@gmail.com"),
               person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"))
as necessary.
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'regtools', 'toweranNA', 'partools'

Packages suggested but not available for checking:
  'JOUSBoost', 'keras', 'cdparcoord'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Output from running autoreconf:
  Error in tempdir() using /tmp/arXXXXXX: Could not create directory /tmp/araLBRQk: No space left on device at /usr/share/autoconf/Autom4te/General.pm line 297.
Running ‘testthat.R’ [52s/60s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(qfratio)
  > 
  > test_check("qfratio")
  Saving _problems/test_ratio-364.R
  [ FAIL 1 | WARN 20 | SKIP 0 | PASS 6808 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_ratio.R:364:25'): Existence conditions: qfmrm, singular, range identical, A22 = 0, A12 != 0 ──
  Error in `file(file, if (append) "a" else "w")`: cannot open the connection
  Backtrace:
      ▆
   1. └─testthat::expect_silent(...) at test_ratio.R:364:25
   2.   └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
   3.     └─testthat (local) .capture(...)
   4.       └─withr::with_output_sink(...)
   5.         └─withr:::set_output_sink(file = new, append = append, split = split)
   6.           └─withr:::output_sink(file = file, append = append, split = split)
   7.             └─base::sink(file = file, append = append, type = "output", split = split)
   8.               └─base::file(file, if (append) "a" else "w")
  
  [ FAIL 1 | WARN 20 | SKIP 0 | PASS 6808 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘qfratio.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmporCrnc/Rf103fda769c40b9': No space left on device

Quitting from qfratio.Rmd:13-19 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from qfratio.Rmd:13-19 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qfratio.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘qfratio.Rmd’

--- re-building ‘qfratio_distr.Rmd’ using rmarkdown
--- finished re-building ‘qfratio_distr.Rmd’

SUMMARY: processing the following file failed:
  ‘qfratio.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Indranil Ghosh <indranilg49@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Indranil",
                    family = "Ghosh",
                    role = c("aut", "cre"),
                    email = "indranilg49@gmail.com")
as necessary.

The Description field contains
  theoretic models (Flitney and Abbott 2002) <arXiv:quant-ph/0208069>.
  1998) <arXiv:quant-ph/9804010>, Prisoner's Dilemma (J. Orlin Grabbe
  2005) <arXiv:quant-ph/0506219>, Two Person Duel (Flitney and Abbott
  2004) <arXiv:quant-ph/0305058>, Battle of the Sexes (Nawaz and Toor
  2004) <arXiv:quant-ph/0110096>, Hawk and Dove Game (Nawaz and Toor
  2010) <arXiv:quant-ph/0108075>, Newcomb's Paradox (Piotrowski and
  Sladkowski 2002) <arXiv:quant-ph/0202074> and Monty Hall Problem
  (Flitney and Abbott 2002) <arXiv:quant-ph/0109035>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emerson", "Luis", "de", "Santa", "Helena", "Wagner", "Santos", "de", "Lima"),
                      family = "<wagnersantos.ufs@hotmail.com>",
                      role = "aut",
                      email = "wagnersantos.ufs@hotmail.com"),
               person(given = c("Wagner", "Santos"),
                      family = "de Lima",
                      role = "cre",
                      email = "wagnersantos.ufs@hotmail.com"))
as necessary.
Package required but not available: ‘qgcomp’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AER’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp7LoCV5/ltxf945f53cd6095/st_as_stars.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

The BugReports field in DESCRIPTION has
  https://github.com/SachaEpskamp/qgraph
which should likely be
  https://github.com/SachaEpskamp/qgraph/issues
instead.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘ManHsia Yang <ymh@tari.gov.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "ManHsia",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "ymh@tari.gov.tw")
as necessary.
Packages required but not available: 'rms', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpyQphEO/Rff1899479bb416': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) qif.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘pfe.Rd’, ‘qkid.Rd’, ‘qkiosk-package.Rd’
Maintainer: ‘Juan Gea <juangea@geax.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Gea"),
                      family = "Rosat",
                      role = "aut"),
               person(given = c("Ramon", "Martínez", "Coscollà"),
                      family = ".",
                      role = "aut"),
               person(given = "Juan",
                      family = "Gea",
                      role = "cre",
                      email = "juangea@geax.net"))
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpaOkz8t/Rff029f3ecb0162': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘qol-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmppCj2fx/filef6bab5a27e3a3/recode.R': No space left on device
Execution halted
 NONE
Maintainer: ‘Wilson Jr. Aala <s98107020@gs.ncku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Wilson", "Jr."),
                    family = "Aala",
                    role = c("aut", "cre"),
                    email = "s98107020@gs.ncku.edu.tw")
as necessary.
Packages required but not available: 'rstatix', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rstatix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qPRAentry.Rcheck/00install.out’ for details.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stephen Turner <vustephen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "vustephen@gmail.com")
as necessary.
Maintainer: ‘Adam Loy <loyad01@gmail.com>’

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpBpM2Nj/Rfefc6439e2ad90': No space left on device
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Wayne Oldford <rwoldford@uwaterloo.ca>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘qqtest.Rd’:
    https://doi.org/10.1080/00031305.2015.1090338
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Robert Stine  <stine@upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "Stine",
                    role = c("aut", "cre"),
                    email = "stine@upenn.edu")
as necessary.
Maintainer: ‘Xiaoyu Song <xs2148@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaoyu",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "xs2148@cumc.columbia.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qrcm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karl Gregory <gregorkb@stat.sc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Gregory",
                    role = c("aut", "cre"),
                    email = "gregorkb@stat.sc.edu")
as necessary.
Maintainer: ‘Bob Rudis <bob@rud.is>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Packages required but not available: 'Hmisc', 'rms'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yan Li <bluefatterplaydota@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Li",
                      role = c("aut", "cre", "trl"),
                      email = "bluefatterplaydota@gmail.com"),
               person(given = "Matthew",
                      family = "Sperrin",
                      role = c("aut", "ctb")),
               person(given = "ClinRisk",
                      family = "Ltd.",
                      role = "cph"),
               person(given = c("Tjeerd", "Pieter"),
                      family = "van Staa",
                      role = c("aut", "ths")))
as necessary.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Running massageExamples to create ‘qrnn-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpOFblJp/filef4c2940eff272/qrnn-rbf.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Kuhn",
                    role = c("aut", "cre"),
                    email = "mxkuhn@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
cannot open the connection
problem found in ‘H.Rd’
Error(s) in re-building vignettes:
  ...
--- re-building ‘ExponentiateModN.Rmd’ using rmarkdown
--- finished re-building ‘ExponentiateModN.Rmd’

--- re-building ‘addbyqft.Rmd’ using rmarkdown
--- finished re-building ‘addbyqft.Rmd’

--- re-building ‘deutsch-jozsa.Rmd’ using rmarkdown
--- finished re-building ‘deutsch-jozsa.Rmd’

--- re-building ‘grover.Rmd’ using rmarkdown
--- finished re-building ‘grover.Rmd’

--- re-building ‘phase_estimation.Rmd’ using rmarkdown
--- finished re-building ‘phase_estimation.Rmd’

--- re-building ‘qft.Rmd’ using rmarkdown
--- finished re-building ‘qft.Rmd’

--- re-building ‘qsimulatR.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpmC3UZW/Rf10593c125b2ad1': No space left on device

Quitting from qsimulatR.Rmd:470-472 [unnamed-chunk-33]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from qsimulatR.Rmd:470-472 [unnamed-chunk-33]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qsimulatR.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘qsimulatR.Rmd’

SUMMARY: processing the following file failed:
  ‘qsimulatR.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'dada2', 'ShortRead'

Package suggested but not available for checking: ‘dunn.test’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Maintainer: ‘Brantly Callaway <brantly.callaway@uga.edu>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'Hmisc', 'BMisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qtkit.Rcheck/00install.out’ for details.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmZAph4/ltxf9572fe9b7fa/probs_qtl2_to_array.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpfibq7E/Rffb561788fbc56': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Warning in file() :
  cannot open file '/tmp/RtmpCqUJyx/Rffe39d60be102': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Running examples in ‘qtl2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maxmarg
> ### Title: Find genotypes with maximum marginal probabilities
> ### Aliases: maxmarg
> 
> ### ** Examples
> 
> # load data and calculate genotype probabilities
> iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
Error in utils::unzip(file, exdir = dir) : 
  cannot open file '/tmp/Rtmph1rDrd/qtl2_da7wnr6uujgiouy/iron_geno.csv': No space left on device
Calls: read_cross2 -> <Anonymous>
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpiJfDd7/ltx10b0191be9946b/decomp_kinship.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpd8N7Hl/filef69887973b152': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpd8N7Hl/filef69887973b152': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Ivan D. Pavicevic <ivanp84@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ivan", "D."),
                    family = "Pavicevic",
                    role = c("aut", "cre"),
                    email = "ivanp84@gmail.com")
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhou",
                      family = "Ya-Hui",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elias", "Chaibub"),
                      family = "Neto",
                      role = "aut",
                      email = "echaibub@hotmail.com"),
               person(given = c("Brian", "S."),
                      family = "yandell",
                      role = c("aut", "cre"),
                      email = "brian.yandell@wisc.edu"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pscdbp.Rd’:
    http://dx.doi.org/10.1371/journal.pgen.0020130
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘bic.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘mcmc.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
    http://dx.doi.org/10.1007/s10994-008-5057-7
  File ‘parents.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
Maintainer: ‘Karl W Broman <broman@wisc.edu>’

Reading Rd files failed with message:
  cannot open the connection
Running massageExamples to create ‘qtl-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmp9KboPQ/file108d423435bb96/clean.scantwo.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX .....................Warning in file(out, "wt") :
  cannot open file '/tmp/RtmprIkpYA/file1131511d5c9c37': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmprIkpYA/file1131511d5c9c37': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘np’

Package suggested but not available for checking: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Siva Rajesh Kasa <sivarajesh.kasa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Kasa",
                      role = "aut"),
               person(given = c("Siva", "Rajesh"),
                      family = "Kasa",
                      role = "cre",
                      email = "sivarajesh.kasa@gmail.com"))
as necessary.
Maintainer: ‘Berwin A. Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Berwin", "A.", "Turlach", "R", "port", "by", "Andreas", "Weingessel", "<Andreas.Weingessel@ci.tuwien.ac.at>", "Fortran", "contributions", "from", "Cleve", "Moler"),
                      family = "dpodi/LINPACK)",
                      role = "aut",
                      email = "Andreas.Weingessel@ci.tuwien.ac.at",
                      comment = "a modified version of"),
               person(given = c("Berwin", "A."),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Package required but not available: ‘ggpubr’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppEigen’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/quadrupen.Rcheck/00install.out’ for details.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘wilcox1973.Rmd’ using rmarkdown

Quitting from wilcox1973.Rmd:110-120 [correlation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'GGally'
---
Backtrace:
    ▆
 1. └─base::library(GGally)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wilcox1973.Rmd' failed with diagnostics:
there is no package called 'GGally'
--- failed re-building ‘wilcox1973.Rmd’

SUMMARY: processing the following file failed:
  ‘wilcox1973.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘QuantBondCurves-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: valuation.bonds
> ### Title: Bond valuation
> ### Aliases: valuation.bonds
> 
> ### ** Examples
> 
> valuation.bonds(maturity = "2026-06-01", coupon.rate = 0.06, rates = 0.08,
+                 analysis.date = "2022-06-01")
[1] 0.9337049
> valuation.bonds(maturity = "2026-06-01", coupon.rate = 0.06, rates = rep(0.08,4),
+                 analysis.date = "2022-06-01", rate.type = 0)
[1] 0.923377
> valuation.bonds(maturity = "2026-06-01", analysis.date= "2025-02-27",
+                 coupon.rate = c(0.06, 0.062, 0.063, 0.065, 0.066, 0.068),
+                 rates = c(0.08, 0.082, 0.078, 0.09, 0.077, 0.085),
+                 asset.type = "IBR")
[1] 0.9936186
> valuation.bonds(maturity = "2026-06-01", coupon.rate = 0.06,
+                 rates = 0.08, asset.type = "IBR", freq = 4,
+                 spread = 0.03)
Warning in max.default(NA_real_, NA_real_, NA_real_, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
Error in data.frame(c(analysis.date, as.character(dates[-length(dates)])),  : 
  arguments imply differing number of rows: 1, 0
Calls: valuation.bonds -> coupons -> apply -> data.frame
Execution halted
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘BusinessDays.Rd’, ‘LastDayOfMonth.Rd’, ‘NumExcel2DateR.Rd’, ‘NumR2DateR.Rd’, ‘day_count.Rd’, ‘difftime_business.Rd’, ‘difftime_leap_year.Rd’
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joachim Zuckarelli <joachim@zuckarelli.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joachim",
                    family = "Zuckarelli",
                    role = c("aut", "cre"),
                    email = "joachim@zuckarelli.de")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cinzia Viroli <cinzia.viroli@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Berrettini",
                      role = "aut"),
               person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = c("aut", "cre"),
                      email = "cinzia.viroli@unibo.it"))
as necessary.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following calls to attach():
File ‘quantmod/R/attachSymbols.R’:
  attach(NULL, pos = pos, name = DB$name)
  attach(NULL, pos = pos, name = DB$name)
See section ‘Good practice’ in ‘?attach’.
cannot open the connection
problem found in ‘getSymbols.csv.Rd’
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lipsitz",
                      role = "aut"),
               person(given = "Alexandre",
                      family = "Belloni",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"))
as necessary.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘yfR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) quarries.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:20-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:23-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:26-28: Lost braces in \itemize; meant \describe ?
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘quax.Rd’
cannot open the connection
problem found in ‘k_power.Rd’
Maintainer: ‘Laura Anderlucci <laura.anderlucci@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = "aut"),
               person(given = "Laura",
                      family = "Anderlucci",
                      role = c("aut", "cre"),
                      email = "laura.anderlucci@unibo.it"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpQZxIeE/filefb6eb563815f/parse_expression.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘labelled’

Packages suggested but not available for checking: 'janitor', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'MBESS'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Maintainer: ‘Pedro Canadilla <pedro.canadilla@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pedro",
                    family = "Canadilla",
                    role = c("aut", "cre"),
                    email = "pedro.canadilla@gmail.com")
as necessary.

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/Rtmp9Md7Oo/Rff88933f7fc05b': No space left on device
cannot open the connection
problem found in ‘for_all.Rd’
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Package required but not available: ‘textstem’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘A. Luise Kuehn <luise.kuehn@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "Luise"),
                    family = "Kuehn",
                    role = c("aut", "cre"),
                    email = "luise.kuehn@uni-greifswald.de")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Packages required but not available: 'plotly', 'rsample'

Package suggested but not available for checking: ‘detourr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Packages required but not available: 'drc', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vitor Marques <vmrodriguespro@gmail.com>’

The Description field contains
  <arXiv:quant-ph/9706062v2>; C. Godsil (2011) <arXiv:1103.2578v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘CORElearn’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘QZ-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fda.geigen
> ### Title: Generalized Eigen Analysis as in fda Package
> ### Aliases: fda.geigen
> ### Keywords: programming
> 
> ### ** Examples
> 
> library(QZ, quiet = TRUE)
> 
> A <- matrix(as.double(1:6), 2)
> B <- matrix(as.double(c(2, 1, 1, 2)), 2)
> C <- diag(as.double(1:3))
> 
> ret.qz <- fda.geigen(A, B, C)
> 
> ### Verify
> library(fda, quiet = TRUE)
Error in library(fda, quiet = TRUE) : there is no package called ‘fda’
Execution halted
Maintainer: ‘Thomas Obadia <thomas.obadia@pasteur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pierre-Yves",
                      family = "Boelle",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Obadia",
                      role = c("aut", "cre"),
                      email = "thomas.obadia@pasteur.fr"))
as necessary.
checkRd: (-1) est.R0.ML.Rd:98: Lost braces
    98 | Supplementary Material S1 from \doi{10.1186/1472-6947-12-147}{Obadia et al., 2012}.
       |                                                              ^
checkRd: (-1) plot.R0.R.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from one estimation method.
       |                                                      ^
checkRd: (-1) plot.R0.sR.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from an
       |                                                      ^
Maintainer: ‘Denise Rava <drava@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denise",
                    family = "Rava",
                    role = c("aut", "cre"),
                    email = "drava@ucsd.edu")
as necessary.

The Description field contains
  selection process. Rava, D. and Xu, R. (2020) <arXiv:2003.09460>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) do_admb.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_pars.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Andrea Fasulo <fasulo@istat.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrea", "Fasulo,Giulio", "Barcaroli,Stefano", "Falorsi,Alessio", "Guandalini,Daniela", "Pagliuca,Marco", "Dionisio"),
                      family = "Terribili",
                      role = "aut"),
               person(given = "Andrea",
                      family = "Fasulo",
                      role = "cre",
                      email = "fasulo@istat.it"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2country
which should likely be
  https://github.com/oobianom/r2country/issues
instead.
Warning in file() :
  cannot open file '/tmp/RtmpEqXaeL/Rffce806ec41291': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/R2D2ordinal.Rcheck/00install.out’ for details.
Maintainer: ‘Jacob Kastl <jacob.kastl@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Jacob Kastl <jacob.kastl@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Robin Van Oirbeek <robin.vanoirbeek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Van Oirbeek",
                    role = c("aut", "cre"),
                    email = "robin.vanoirbeek@gmail.com")
as necessary.
Packages required but not available: 'pbkrtest', 'afex'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/R2MLwiN.Rcheck/00install.out’ for details.
Found the following calls to attach():
File ‘R2OpenBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘example_frequently_asked_r2resize.Rmd’ using rmarkdown
--- finished re-building ‘example_frequently_asked_r2resize.Rmd’

--- re-building ‘introduction_r2resize.Rmd’ using rmarkdown
--- finished re-building ‘introduction_r2resize.Rmd’

--- re-building ‘r2resize-flexible-elastic-cards.Rmd’ using rmarkdown
--- finished re-building ‘r2resize-flexible-elastic-cards.Rmd’

--- re-building ‘r2resize-image-and-markdown-resizing.Rmd’ using rmarkdown
--- finished re-building ‘r2resize-image-and-markdown-resizing.Rmd’

--- re-building ‘r2resize-resizable-containers.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp4XXL9F/Rf102ad03caca2df': No space left on device

Quitting from r2resize-resizable-containers.Rmd:12-22 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from r2resize-resizable-containers.Rmd:12-22 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'r2resize-resizable-containers.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘r2resize-resizable-containers.Rmd’

--- re-building ‘resizable_containers_split_screen_r2resize.Rmd’ using rmarkdown
--- finished re-building ‘resizable_containers_split_screen_r2resize.Rmd’

--- re-building ‘split_card_html_r2resize.Rmd’ using rmarkdown
--- finished re-building ‘split_card_html_r2resize.Rmd’

SUMMARY: processing the following file failed:
  ‘r2resize-resizable-containers.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘r2rtf-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rtf_encode
> ### Title: Render to RTF Encoding
> ### Aliases: rtf_encode
> 
> ### ** Examples
> 
> 
> library(dplyr) # required to run examples

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> 
> # Example 1
> head(iris) %>%
+   rtf_body() %>%
+   rtf_encode() %>%
+   write_rtf(file = file.path(tempdir(), "table1.rtf"))
Warning in file(file, ifelse(append, "a", "w")) :
  cannot open file '/tmp/RtmpjykEqa/table1.rtf': No space left on device
Error in file(file, ifelse(append, "a", "w")) : 
  cannot open the connection
Calls: %>% -> write_rtf -> write -> cat -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp7BR8kX/ltx105f4070b1b448/utf8Tortf.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2shortcode
which should likely be
  https://github.com/oobianom/r2shortcode/issues
instead.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following calls to attach():
File ‘R2WinBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Running examples in ‘r3dmol-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: m_add_style
> ### Title: Overwrite Previous Style
> ### Aliases: m_add_style
> 
> ### ** Examples
> 
> library(r3dmol)
> 
> # Add style to model
> r3dmol() %>%
+   m_add_model(data = pdb_1j72, format = "pdb") %>%
+   m_add_style(style = m_style_cartoon()) %>%
+   m_zoom_to()
> 
> # Set style to model
> r3dmol() %>%
+   m_add_model(data = pdb_6zsl, format = "pdb") %>%
+   m_set_style(style = m_style_cartoon()) %>%
+   m_set_style(
+     sel = m_sel(chain = "A"),
+     style = m_style_stick(
+       radius = 0.5,
+       colorScheme = "magentaCarbon"
+     )
+   ) %>%
+   m_zoom_to()
Warning in base::file(file, open = "w+b") :
  cannot open file '/tmp/RtmpXLqKGC/viewhtml10275a422e034f/index.html': No space left on device
Error in base::file(file, open = "w+b") : cannot open the connection
Calls: <Anonymous> ... html_print -> save_html -> save_html.default -> <Anonymous>
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpgguI5g/ltx105e28a4f6522/m_add_style.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Sam Wilks <sw463@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sam",
                    family = "Wilks",
                    role = c("aut", "cre"),
                    email = "sw463@cam.ac.uk")
as necessary.
Running examples in ‘r3js-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: arrows3js
> ### Title: Add arrows to a data3js object
> ### Aliases: arrows3js
> 
> ### ** Examples
> 
> # Draw a set of arrows
> from <- cbind(
+   runif(10, 0.2, 0.8),
+   runif(10, 0.2, 0.8),
+   runif(10, 0.2, 0.8)
+ )
> 
> to <- jitter(from, amount = 0.2)
> 
> # Setup base plot
> p <- plot3js(label_axes = FALSE)
> 
> # Add arrows
> p <- arrows3js(
+   p, from, to,
+   arrowhead_length = 0.06,
+   arrowhead_width = 0.04,
+   lwd = 0.01
+ )
> 
> # View the plot
> r3js(p, translation = c(0, 0, 0.15), zoom = 2)
Warning in base::file(file, open = "w+b") :
  cannot open file '/tmp/RtmpYbK0Jn/viewhtml1023d47b182f58/index.html': No space left on device
Error in base::file(file, open = "w+b") : cannot open the connection
Calls: <Anonymous> ... html_print -> save_html -> save_html.default -> <Anonymous>
Execution halted
Package required but not available: ‘meta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Vignette.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmpv6pSC7/Rf107f7e72a1c878': No space left on device

Quitting from Vignette.Rmd:233-235 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Vignette.Rmd:233-235 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ian G. Taylor <Ian.Taylor@noaa.gov>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) r4ss-package.Rd:9: Lost braces; missing escapes or markup?
     9 | A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.19.01, from April 2022).
       |                                                                                                                                                                                                                                                                                                                                                                                                ^
Maintainer: ‘Pawan Rama Mali <prm@outlook.in>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Pawan Rama Mali <prm@outlook.in>’

Reading Rd files failed with message:
  cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘accessibility.Rmd’ using rmarkdown
--- finished re-building ‘accessibility.Rmd’

--- re-building ‘detailed_itineraries.Rmd’ using rmarkdown
--- finished re-building ‘detailed_itineraries.Rmd’

--- re-building ‘faq.Rmd’ using rmarkdown
--- finished re-building ‘faq.Rmd’

--- re-building ‘fare_structure.Rmd’ using rmarkdown
--- finished re-building ‘fare_structure.Rmd’

--- re-building ‘isochrones.Rmd’ using rmarkdown
--- finished re-building ‘isochrones.Rmd’

--- re-building ‘pareto_frontier.Rmd’ using rmarkdown
--- finished re-building ‘pareto_frontier.Rmd’

--- re-building ‘r5r.Rmd’ using rmarkdown
--- finished re-building ‘r5r.Rmd’

--- re-building ‘scenarios.Rmd’ using rmarkdown
--- finished re-building ‘scenarios.Rmd’

--- re-building ‘time_window.Rmd’ using rmarkdown
--- finished re-building ‘time_window.Rmd’

Fatal error: cannot create 'R_TempDir'
SUMMARY: processing the following file failed:
  ‘travel_time_matrix.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘using_R6causal.Rmd’ using rmarkdown

Quitting from using_R6causal.Rmd:199-205 [interventionbackdoor]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package "qgraph" needed for this plotting method to work. Please install it.
---
Backtrace:
    x
 1. \-backdoor_x1$plot(method = "qgraph")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_R6causal.Rmd' failed with diagnostics:
Package "qgraph" needed for this plotting method to work. Please install it.
--- failed re-building ‘using_R6causal.Rmd’

SUMMARY: processing the following file failed:
  ‘using_R6causal.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) post_RA_fits.Rd:61: Lost braces; missing escapes or markup?
    61 |     \item{\code{H(po_{bm_{n.bm}}, po_act)}:}{ last benchmark prior bm_{n.bm} inducing the fit \code{fits.bm[[n.bm]]} and actual prior}
       |                                                                       ^
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘José Matute <jmatuteflores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘radiant.data’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'plotly'

Package suggested but not available for checking: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘radiant.data’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'radiant.data', 'radiant.basics', 'car', 'DiagrammeR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'radiant.data', 'radiant.model', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'radiant.data', 'radiant.design', 'radiant.basics', 'radiant.model',
  'radiant.multivariate'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Doug Nychka <nychka@mines.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Doug",
                      family = "Nychka",
                      role = c("aut", "cre"),
                      email = "nychka@mines.edu"),
               person(given = "Eric",
                      family = "Gilleland",
                      role = "aut"),
               person(given = "Liangying",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Tim",
                      family = "Hoar",
                      role = "aut"),
               person(given = "Kate",
                      family = "Young",
                      role = "aut"))
as necessary.
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "david.morina@uab.cat",
                      comment = "Barcelona Graduate School of Mathematics"),
               person(given = "Manuel",
                      family = "Higueras",
                      role = "aut",
                      comment = "Basque Center for Applied Mathematics"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut",
                      comment = "Universitat Autònoma de Barcelona"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘lexicon’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johannes",
                      family = "Burkhardt",
                      role = c("aut", "cre"),
                      email = "johannes.burkhardt@gmail.com"),
               person(given = "Matthias",
                      family = "Bannert",
                      role = "aut",
                      email = "matthias.bannert@gmail.com"))
as necessary.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carel F.W. Peeters <carel.peeters@wur.nl>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpnDE8XK/Rf1096551a4b4259': No space left on device
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dione", "Pereira"),
                      family = "Cardoso",
                      role = c("aut", "cre"),
                      email = "cardoso.dione@gmail.com"),
               person(given = c("Edilson", "Marcelino"),
                      family = "Silva",
                      role = "aut"),
               person(given = c("Paulo", "Cesar"),
                      family = "Ossani",
                      role = "aut"),
               person(given = c("Marx", "Leandro", "Naves"),
                      family = "Silva",
                      role = "ctb"),
               person(given = c("Joel", "Augusto"),
                      family = "Muniz",
                      role = "ctb"),
               person(given = c("Daniel", "Furtado"),
                      family = "Ferreira",
                      role = "ctb"),
               person(given = c("Junior", "Cesar"),
                      family = "Avanzi",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
  File ‘RainFallExample.Rd’:
    \keyword{
          Erosivity index; R-Factor; Universal [TRUNCATED]
  File ‘RainfallErosivityFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
Maintainer: ‘Jost von Hardenberg <j.vonhardenberg@isac.cnr.it>’

The BugReports field in DESCRIPTION has
  https://github.com/jhardenberg/rainfarmr
which should likely be
  https://github.com/jhardenberg/rainfarmr/issues
instead.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpN7xkIT/Rf10beb9b3ed298': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Kory D. Johnson <korydjohnson@gmail.com>’

The Description field contains
  <arXiv:1510.06322>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Erica Ponzi <erica.ponzi@medisin.uio.no>’

The Description field contains
  <arXiv:2101.09110>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Phil Mike Jones <philmikejones@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'haven', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chapman Siu <chpmn.siu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chapman",
                    family = "Siu",
                    role = c("aut", "cre"),
                    email = "chpmn.siu@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rAmCharts.Rcheck/00install.out’ for details.
Maintainer: ‘Xinwei Ma <x1ma@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matias", "D."),
                      family = "Cattaneo",
                      role = "aut"),
               person(given = "Paul",
                      family = "Cheung",
                      role = "aut"),
               person(given = "Xinwei",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "x1ma@ucsd.edu"),
               person(given = "Yusufcan",
                      family = "Masatlioglu",
                      role = "aut"),
               person(given = "Elchin",
                      family = "Suleymanov",
                      role = "aut"))
as necessary.

The Description field contains
  Cattaneo, Ma, Masatlioglu and Suleymanov (2020) <arXiv:1712.03448> and
  Cattaneo, Cheung, Ma, and Masatlioglu (2022) <arXiv:2110.10650>, which
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhiyong Zhang <zzhang4@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zzhang4@nd.edu"),
               person(given = "Jack",
                      family = "McArdle",
                      role = "aut"),
               person(given = "Aki",
                      family = "Hamagami",
                      role = "aut"),
               person(given = c("&", "Kevin"),
                      family = "Grimm",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Intro-to-RaMS.Rmd’ using rmarkdown

Quitting from Intro-to-RaMS.Rmd:106-109 [plotBPC]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library(tidyverse)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Intro-to-RaMS.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘Intro-to-RaMS.Rmd’

--- re-building ‘Intro-to-tmzML.Rmd’ using rmarkdown
RaMS:::`$.msdata_connection`RaMS:::`[.msdata_connection`--- finished re-building ‘Intro-to-tmzML.Rmd’

--- re-building ‘Minifying-files-with-RaMS.Rmd’ using rmarkdown
--- finished re-building ‘Minifying-files-with-RaMS.Rmd’

--- re-building ‘RaMS-and-friends.Rmd’ using rmarkdown
--- finished re-building ‘RaMS-and-friends.Rmd’

--- re-building ‘speed_size_comparison.Rmd’ using rmarkdown
--- finished re-building ‘speed_size_comparison.Rmd’

SUMMARY: processing the following file failed:
  ‘Intro-to-RaMS.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Zach Branson <zach@stat.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zach",
                    family = "Branson",
                    role = c("aut", "cre"),
                    email = "zach@stat.cmu.edu")
as necessary.

The Description field contains
  variable. See Branson (2021) <arXiv:1804.08760> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

The Description field contains
  <arXiv:1809.05212>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘randcorr-package.Rd’:
    \keyword{matrix,}
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Grace",
                      family = "Deng",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu"))
as necessary.
Package required but not available: ‘sparseFLMM’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ron Ammar <ron.ammar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Ammar",
                    role = c("aut", "cre"),
                    email = "ron.ammar@gmail.com")
as necessary.
Package required but not available: ‘GGally’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'randomForestSRC', 'varPro'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'randomForestSRC', 'varPro'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'pec', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Langfelder <peter.langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lin",
                      family = "Song",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘randomGODB-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: addName2List
> ### Title: addName2List
> ### Aliases: addName2List
> 
> ### ** Examples
> 
> BP_ANCESTOR<-addName2List(as.list(GO.db::GOBPANCESTOR))
Error in loadNamespace(x) : there is no package called ‘GO.db’
Calls: addName2List ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Joseph J. Lee <joseph.j.lee@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "J."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "joseph.j.lee@post.harvard.edu"),
               person(given = "Tirthankar",
                      family = "Dasgupta",
                      role = "aut"))
as necessary.
Maintainer: ‘D. Labes <detlewlabes@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "D.",
                    family = "Labes",
                    role = c("aut", "cre"),
                    email = "detlewlabes@gmx.de")
as necessary.
checkRd: (-1) makeDesignMatrix.Rd:16: Lost braces; missing escapes or markup?
    16 | is randomized to a certain treatment {j}, the entry of \code{(i,j)} of the
       |                                      ^
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Saip Ciss <saip.ciss@wanadoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Saip",
                    family = "Ciss",
                    role = c("aut", "cre"),
                    email = "saip.ciss@wanadoo.fr")
as necessary.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##experimental
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Siddharth R <r.siddharthcse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aghila",
                      family = "G",
                      role = "aut"),
               person(given = "Siddharth",
                      family = "R",
                      role = c("aut", "cre"),
                      email = "r.siddharthcse@gmail.com"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matthias Kohl <Matthias.Kohl@stamats.de>’

Found the following (possibly) invalid URLs:
  URL: svn+ssh://stamats@svn.r-forge.r-project.org/svnroot/robast/pkg/RandVar/vignettes/RandVar.Rnw
    From: inst/doc/RandVar.pdf
    Message: Invalid URI scheme
Maintainer: ‘Mihai Valcu <valcu@orn.mpg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘spocc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vasyl Pihur <vpihur@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vasyl",
                      family = "Pihur",
                      role = c("aut", "cre"),
                      email = "vpihur@gmail.com"),
               person(given = "Somnath",
                      family = "Datta",
                      role = "aut",
                      email = "somnath.datta@louisville.edu"),
               person(given = "Susmita",
                      family = "Datta",
                      role = "aut",
                      email = "susmita.datta@louisville.edu"))
as necessary.
Maintainer: ‘Quentin Grimonprez <quentingrim@yahoo.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhaozhi Qian <qianzhaozhi@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhaozhi",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "qianzhaozhi@connect.hku.hk")
as necessary.
Maintainer: ‘Frank Konietschke <frank.konietschke@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre"),
                      email = "frank.konietschke@charite.de"),
               person(given = "Sarah",
                      family = "Friedrich",
                      role = "aut"),
               person(given = "Edgar",
                      family = "Brunner",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Running examples in ‘rankhazard-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rankhazard-package
> ### Title: Rank-hazard plots
> ### Aliases: rankhazard-package rankhazard
> ### Keywords: package hplot survival
> 
> ### ** Examples
> 
> library(survival)
> model <- coxph(Surv(time,status) ~ age + sex + ph.karno, data = cancer, x=TRUE)
> rankhazardplot(model, data=cancer)
Y-axis range:  0.608 1.49 
 
Relative hazards for each covarite: 
          Min. 1st Qu. Median 3rd Qu. Max.
age      0.743   0.917      1    1.08 1.27
sex      0.608   0.608      1    1.00 1.00
ph.karno 0.766   0.875      1    1.07 1.49
> library(rms)
Error in library(rms) : there is no package called ‘rms’
Execution halted
Package required but not available: ‘netmeta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) grottaBar.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:83: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hsiuying Wang <wang@stat.nycu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hsiuying",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wang@stat.nycu.edu.tw"),
               person(given = "Yu-Chun",
                      family = "Lin",
                      role = "aut"),
               person(given = "Wan-Ting",
                      family = "Huang",
                      role = "aut"))
as necessary.
checkRd: (-1) rankL2R.Rd:18: Lost braces; missing escapes or markup?
    18 | where the vector dimension is 2^{response.number}.}
       |                                 ^
Package required but not available: ‘randomForestSRC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Markus Loecher <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = "Madhav",
                      family = "Kumar",
                      role = "aut",
                      email = "madhavkumar2005@gmail.com"))
as necessary.
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpAuqpnp/file1156da30377056', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpAuqpnp/file1156da30377056/rapidxmlr-package.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘evds_table_api.R’ ‘excel_internal.R’ ‘request_funcs.R’
    ‘sp_df_utils.R’
Packages required but not available: 'rms', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘hypervolume’

Package suggested but not available for checking: ‘gurobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luis Cayuela <luis.cayuela@urjc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Cayuela",
                      role = c("aut", "cre"),
                      email = "luis.cayuela@urjc.es"),
               person(given = c("Nicholas", "J."),
                      family = "Gotelli",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘animal_matrices.Rmd’ using rmarkdown
--- finished re-building ‘animal_matrices.Rmd’

--- re-building ‘credible_intervals.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmpth1WzR/Rf11e916421924e2': No space left on device

Quitting from credible_intervals.Rmd:126-155 [prior_comparison]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from credible_intervals.Rmd:126-155 [prior_comparison]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'credible_intervals.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘credible_intervals.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘onepopperiod.Rmd’ using rmarkdown
--- finished re-building ‘onepopperiod.Rmd’

--- re-building ‘quick_start.Rmd’ using rmarkdown
--- finished re-building ‘quick_start.Rmd’

--- re-building ‘transition_priors.Rmd’ using rmarkdown
--- finished re-building ‘transition_priors.Rmd’

SUMMARY: processing the following file failed:
  ‘credible_intervals.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Boris Leroy <leroy.boris@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Boris",
                    family = "Leroy",
                    role = c("aut", "cre"),
                    email = "leroy.boris@gmail.com")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "Jiali",
                      family = "Mei",
                      role = "aut"),
               person(given = c("authors", "of", "the", "ARPACK", "library.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Ye Tian <ye.t@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ye",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "ye.t@columbia.edu"),
               person(given = "Yang",
                      family = "Feng",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bryan A. Fuentes <bryandrep@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'GGally', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'labelled', 'gtsummary'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘findblocks_bc.Rd’ ‘getdata_bc.Rd’ ‘listdata_bc.Rd’ ‘opendata_bc.Rd’
    ‘utils.R’
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Joshua O'Brien <joshmobrien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "O'Brien",
                    role = c("aut", "cre"),
                    email = "joshmobrien@gmail.com")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Running massageExamples to create ‘raster-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpdnCQSA/file14b27d1d04d42f/cv.R': No space left on device
Execution halted
 NONE
Package required but not available: ‘geiger’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmplIqsgL/Rf1198361df52e2c': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Mauricio Olivares <mau.olivarego@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: mauricio.olivares@ucl.ac.uk
    From: inst/doc/RDperm.pdf
  URI: i.sarmiento@uniandes.edu.co
    From: inst/doc/RDperm.pdf
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Waldemar", "W."),
                      family = "Koczkodaj",
                      role = "aut"),
               person(given = "Feng",
                      family = "Li",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"))
as necessary.
checkRd: (-1) S1.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{m_bar}{the sample vector of moments for a specified vector $(h_{a,r},y)$}
       |                                                                      ^
checkRd: (-1) S1.Rd:16: Lost braces; missing escapes or markup?
    16 | \item{N_k}{index of the $ h_{a,r}$ function considered}
       |                             ^
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yixuan",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "yixuan.qiu@cos.name")
as necessary.
Maintainer: ‘Solveig Pospiech <s.pospiech@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Solveig",
                      family = "Pospiech",
                      role = c("aut", "cre"),
                      email = "s.pospiech@gmx.de"),
               person(given = "Wiebke",
                      family = "Fahlbusch",
                      role = "ctb"))
as necessary.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Davide Massidda <davide.massidda@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giulio",
                      family = "Vidotto",
                      role = "aut",
                      email = "giulio.vidotto@unipd.it"),
               person(given = "Stefano",
                      family = "Noventa",
                      role = "aut",
                      email = "stefano.noventa@uni-tuebingen.de"),
               person(given = "Davide",
                      family = "Massidda",
                      role = c("aut", "cre"),
                      email = "davide.massidda@gmail.com"),
               person(given = "Marco",
                      family = "Vicentini",
                      role = "aut",
                      email = "marco.vicentini@gmail.com"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpz8cj9A/file1232395debacc8': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpz8cj9A/file1232395debacc8': No such file or directory
Error in file(con, "r") : cannot open the connection
install log ‘’ does not exist
Maintainer: ‘Amanda Rehbein <amanda.rehbein@usp.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running massageExamples to create ‘raytracing-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpNGouT3/file1205805710b43c', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpNGouT3/file1205805710b43c/Ks.R': No such file or directory
Execution halted
 NONE
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Wilson Freitas <wilson.freitas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilson",
                    family = "Freitas",
                    role = c("aut", "cre"),
                    email = "wilson.freitas@gmail.com")
as necessary.
Running massageExamples to create ‘rbcb-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpOySKqI/file1202bb78a43eab/get_top5s_selic_market_expectations.R': No space left on device
Execution halted
 NONE
Error: inferior call failed
Execution halted
Maintainer: ‘Diego Gallardo <dgallardo@ubiobio.cl>’

The Description field contains
  Gallardo and Saulo <arXiv:2110.04428> The package also provides tools
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'flextable', 'officer'

Packages suggested but not available for checking:
  'haven', 'tidyverse', 'ivreg', 'car', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Wacek Kusnierczyk <waku@idi.ntnu.no>’
  Authors@R: ‘Wacek Kusnierczyk [aut, cre], Dirk Eddelbuettel [ctb], Berend Hasselman [ctb]’
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpfXVxhz/Rf13823633dd79cd': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Packages required but not available: 'ggmcmc', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Running examples in ‘rbiom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bdiv_clusters
> ### Title: Cluster samples by beta diversity k-means.
> ### Aliases: bdiv_clusters
> 
> ### ** Examples
> 
>     library(rbiom)
>     
>     biom <- rarefy(hmp50)
>     biom$metadata$bray_cluster <- bdiv_clusters(biom)
>     
>     pull(biom, 'bray_cluster')[1:10]
HMP01 HMP02 HMP03 HMP04 HMP05 HMP06 HMP07 HMP08 HMP09 HMP10 
    3     1     1     1     3     1     3     1     1     2 
Levels: 1 2 3 4 5
>     
>     bdiv_ord_plot(biom, stat.by = "bray_cluster")
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmprqIKCW/rbiom/cache/128c5b2a41585de0f36db6f1f3170787.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: bdiv_ord_plot ... <Anonymous> -> .fun -> set_cache_value -> saveRDS -> gzfile
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpLvI8n6/file1259152216a717': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpLvI8n6/file1259152216a717': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Jialun Zhang <reatank@foxmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jialun",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "reatank@foxmail.com"),
               person(given = "Zhilan",
                      family = "Fan",
                      role = "aut"),
               person(given = "Hang",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Incorrect (un)loading of package shared object.
Fatal error: cannot create 'R_TempDir'
The system-specific extension for shared objects must not be added.
See ?library.dynam.
 [2s/3s] OK
Fatal error: cannot create 'R_TempDir'
File ‘rbm25/libs/rbm25.so’:
  Found non-API call to R: ‘R_NamespaceRegistry’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Abdelmoneim Amer Desouki <desouki@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Abdelmoneim", "Amer"),
                    family = "Desouki",
                    role = c("aut", "cre"),
                    email = "desouki@hhu.de")
as necessary.

The Description field contains
  Desouki, M. Roeder, A. Ngonga (2019) <arXiv:1903.10326>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marco Scutari <scutari@bnlearn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Baptiste",
                      family = "Denis",
                      role = c("aut", "cre")),
               person(given = "Marco",
                      family = "Scutari",
                      role = c("ctb", "cre"),
                      email = "scutari@bnlearn.com"))
as necessary.
Maintainer: ‘Luke J. Keele <luke.keele@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luke", "J."),
                    family = "Keele",
                    role = c("aut", "cre"),
                    email = "luke.keele@gmail.com")
as necessary.
cannot open the connection
problem found in ‘verifytxoutproof.Rd’
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Serguei Rouzinov <rouzinovs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Serguei",
                      family = "Rouzinov",
                      role = c("aut", "cre"),
                      email = "rouzinovs@gmail.com"),
               person(given = "André",
                      family = "Berchtold",
                      role = "aut"))
as necessary.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/xiangzhou09/rbw
which should likely be
  https://github.com/xiangzhou09/rbw/issues
instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmBLsgf/file1415523e2e6508/zenith_azimuth_from_row_col.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Baoluo",
                      family = "Sun",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Sun and Tan (2020) <arXiv:2009.09286>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'spatstat.linnet', 'spatstat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Amir Goldberg <amirgo@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amir",
                      family = "Goldberg",
                      role = c("aut", "cre"),
                      email = "amirgo@stanford.edu"),
               person(given = c("Sarah", "K."),
                      family = "Stein",
                      role = "aut"))
as necessary.
Package required but not available: ‘rfishbase’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Qiao Liu <liuqiao@stanford.edu>’

The Description field contains
  methods is given in Liu (2022) <arXiv:2212.05925>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Herdiantri Sufriyana <herdi@tmu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rcausim/blob/master/doc/causal_simulation_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Error(s) in re-building vignettes:
  ...
--- re-building ‘causal_simulation_exemplar.Rmd’ using rmarkdown

Quitting from causal_simulation_exemplar.Rmd:36-40 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggnetwork'
---
Backtrace:
    ▆
 1. └─base::library(ggnetwork)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'causal_simulation_exemplar.Rmd' failed with diagnostics:
there is no package called 'ggnetwork'
--- failed re-building ‘causal_simulation_exemplar.Rmd’

--- re-building ‘quick_start.Rmd’ using rmarkdown
--- finished re-building ‘quick_start.Rmd’

SUMMARY: processing the following file failed:
  ‘causal_simulation_exemplar.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘build.Rd’, ‘buildFPGrowth.Rd’, ‘classification.Rd’, ‘fpgrowth.Rd’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rcbayes.Rcheck/00install.out’ for details.
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpQlTe7T/Rf11fef45c2c3722': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Maintainer: ‘Dr. Fayed Alshammri <fayed333@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fayed",
                      family = "Alshammri",
                      role = "aut"),
               person(given = c("Dr.", "Fayed"),
                      family = "Alshammri",
                      role = "cre",
                      email = "fayed333@hotmail.com"))
as necessary.
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
checkRd: (-1) nc_open_CGLS.Rd:29-32: Lost braces
    29 | if(resolution == "300m"){
       |                         ^
checkRd: (-1) nc_open_CGLS.Rd:33-36: Lost braces
    33 | if(resolution == "1km"){
       |                        ^
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘rstatix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpCn5yYC/Rf10410413a40677': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Packages required but not available: 'oceanmap', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Rchoice.Rd:159: Lost braces; missing escapes or markup?
   159 |  \code{ranp}. If the parameters are assumed to be normally distributed \eqn{\beta_i ~ N(\beta, \Sigma)}, then the random parameter are constructed as: \deqn{\beta_{ir}=\beta+L\omega_{ir}} where \eqn{LL'=\Sigma} and \eqn{\omega_{ir}} is the {r}-th draw from standard normal distribution for individual \eqn{i}. 
       |                                                                                                                                                                                                                                                 ^
Maintainer: ‘Hongen Zhang <hzhang.henry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hongen",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang.henry@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘gtsummary’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sebastien Bihorel <sb.pmlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Bihorel",
                    role = c("aut", "cre"),
                    email = "sb.pmlab@gmail.com")
as necessary.
Packages required but not available: 'car', 'Hmisc', 'haven'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aurora Torrente <etorrent@est-econ.uc3m.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Lopez-Pintado",
                      role = "aut",
                      email = "sl2929@columbia.edu"),
               person(given = "Aurora",
                      family = "Torrente.",
                      role = "aut",
                      email = "etorrent@est-econ.uc3m.es"),
               person(given = "Aurora",
                      family = "Torrente",
                      role = "cre",
                      email = "etorrent@est-econ.uc3m.es"))
as necessary.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcmdr', 'RcmdrMisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel-Corneliu Leucuta <danny.ldc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel-Corneliu",
                    family = "Leucuta",
                    role = c("aut", "cre"),
                    email = "danny.ldc@gmail.com")
as necessary.
Packages required but not available: 'Rcmdr', 'epiR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Packages required but not available: 'Rcmdr', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

Packages suggested but not available for checking:
  'car', 'meta', 'netmeta', 'plotly', 'tableone', 'rstatix'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Francois Husson <francois.husson@institut-agro.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Husson",
                      role = c("aut", "cre"),
                      email = "francois.husson@institut-agro.fr"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Le",
                      role = "aut"))
as necessary.
Packages required but not available: 'FactoMineR', 'Rcmdr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richard M. Heiberger <rmh@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Richard", "M."),
                      family = "Heiberger",
                      role = c("aut", "cre"),
                      email = "rmh@temple.edu"),
               person(given = c("with", "contributions", "from", "Burt"),
                      family = "Holland",
                      role = "aut"))
as necessary.
Packages required but not available: 'HH', 'Rcmdr'

Package suggested but not available for checking: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrew",
                      family = "Heiss",
                      role = c("aut", "cre"),
                      email = "andrew@andrewheiss.com"),
               person(given = "Richard",
                      family = "Payne",
                      role = "aut"),
               person(given = "Christa",
                      family = "Schank",
                      role = "aut"),
               person(given = "Jessica",
                      family = "Reese",
                      role = "aut"))
as necessary.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mixlm', 'phia', 'Rcmdr', 'car'

Package suggested but not available for checking: ‘pbkrtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Achmad Fauzi Bagus F <fauzi.pandya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Monalisa", "Sipahutar,Setia"),
                      family = "Pramana",
                      role = "aut",
                      email = "11.6790@stis.ac.id"),
               person(given = "Achmad",
                      family = "Fauzi",
                      role = c("aut", "cre"),
                      email = "fauzi.pandya@gmail.com"))
as necessary.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcmdr', 'demography', 'ftsa'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Marcelo Goulart Correia <mgoulart.inc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcelo", "Goulart"),
                    family = "Correia",
                    role = c("aut", "cre"),
                    email = "mgoulart.inc@gmail.com")
as necessary.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
Packages required but not available: 'Rcmdr', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Rcmdr', 'Hmisc'

Package suggested but not available for checking: ‘RcmdrMisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

Package suggested but not available for checking: ‘ROpenOffice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

Package suggested but not available for checking: ‘car’

Depends: includes the non-default packages:
  'IQCC', 'qcc', 'qicharts2', 'randtests', 'rmarkdown',
  'TeachingDemos', 'tseries'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'RcmdrMisc', 'car'

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Erich Neuwirth <erich.neuwirth@univie.ac.at>’

The Description field contains
  Cynthia Brewer as described at http://colorbrewer2.org.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yaoxiang Li <liyaoxiang@outlook.com>’

Reading Rd files failed with message:
  cannot open the connection
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rcontroll.Rcheck/00install.out’ for details.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'haven', 'Hmisc', 'weights'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AnnotationDbi’

Packages suggested but not available for checking:
  'meta', 'hgu133plus2.db', 'org.Hs.eg.db', 'oligo'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Shusei Eshima <shuseieshima@gmail.com>’

The Description field contains
  (2023) <arXiv:2305.19045>. Jagger uses patterns derived from
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Karl Forner <karl.forner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Forner",
                    role = c("aut", "cre"),
                    email = "karl.forner@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘print.rcpptimer.R’
Maintainer: ‘Jonathan Olmsted <jpolmsted@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rtn.Rd’:
    http://dx.doi.org/10.1007/BF00143942
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
cannot open the connection
problem found in ‘extract_txt_linkage.Rd’
Maintainer: ‘Jamie Spaulding <jspaulding02@hamline.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jamie",
                      family = "Spaulding",
                      role = c("aut", "cre"),
                      email = "jspaulding02@hamline.edu"),
               person(given = "Keith",
                      family = "Morris",
                      role = "aut"))
as necessary.
Packages required but not available: 'ggmap', 'leafsync'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'sfnetworks', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Maintainer: ‘J.S. Pierre <jean-sebastien.pierre@univ-rennes1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Sebastien",
                      family = "PIERRE",
                      role = c("aut", "cre")),
               person(given = "J.S.",
                      family = "Pierre",
                      role = "cre",
                      email = "jean-sebastien.pierre@univ-rennes1.fr"))
as necessary.
Packages required but not available: 'rms', 'survminer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Colin Millar <colin.millar@ices.dk>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rct3-package.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
  File ‘rct3.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
Maintainer: ‘Isidoro Garcia-Urquieta <isidoro.gu@gmail.com>’

The Description field contains
  <arXiv:1607.00698>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
install log ‘’ does not exist
Packages required but not available: 'ggpubr', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpvEjcRw/ltx127d597d552470/wd_getwd.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘rdbnomics.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpIfjO0l/Rf12a7837ca48b7d': No space left on device

Quitting from rdbnomics.Rmd:202-235 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from rdbnomics.Rmd:202-235 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rdbnomics.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘rdbnomics.Rmd’

SUMMARY: processing the following file failed:
  ‘rdbnomics.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpaFR6ZL/file1296bf70431938/ddi_anlyInfo.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX ...Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpuns1Di/ltx12b2412f3295d9/ddi_method.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'AER', 'np'

Package suggested but not available for checking: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘BriggsEx47.Rd’, ‘ChanceNode.Rd’, ‘ConstModVar.Rd’, ‘DecisionNode.Rd’, ‘DecisionTree.Rd’
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Chi Seng Pun <cspun@ntu.edu.sg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chi", "Seng"),
                      family = "Pun",
                      role = c("aut", "cre"),
                      email = "cspun@ntu.edu.sg"),
               person(given = c("Matthew", "Zakharia"),
                      family = "Hadimaja",
                      role = "aut"))
as necessary.
Package required but not available: ‘redland’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following possibly unsafe calls:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

The Description field contains
  A client library for 'The Guardian' (https://www.guardian.com/) and
Please enclose URLs in angle brackets (<...>).

The BugReports field in DESCRIPTION has
  https://github.com/ironholds/rdian
which should likely be
  https://github.com/ironholds/rdian/issues
instead.
Maintainer: ‘Gennaro Tedesco: <gennarotedesco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gennaro",
                    family = "Tedesco",
                    role = c("aut", "cre"),
                    email = "gennarotedesco@gmail.com")
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

Found the following (possibly) invalid file URIs:
  URI: edd@debian.org
    From: inst/doc/RDieHarder.pdf
  URI: rgb@phy.duke.edu
    From: inst/doc/RDieHarder.pdf
Maintainer: ‘Christopher Bolen <cbolen1@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) farthest_point_sampling.Rd:28: Lost braces; missing escapes or markup?
    28 | space P = {p_1, ..., p_k}, such that each p_i is the farthest 
       |           ^
Maintainer: ‘Richard Reeve <richard.reeve@glasgow.ac.uk>’

The Description field contains
  <arXiv:1404.6520v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christopher Strothmann <rdmpackage@gmail.com>’

The Description field contains
  presented in Strothmann et al. (2022) <arXiv:2201.03329> and Strothmann
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) computeCBMeasure.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Christian Graul <christian.graul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Graul",
                    role = c("aut", "cre"),
                    email = "christian.graul@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hasan BULUT <hasan.bulut@omu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hasan",
                    family = "BULUT",
                    role = c("aut", "cre"),
                    email = "hasan.bulut@omu.edu.tr")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpxTFpXl/Rf12928a19772412': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhirui",
                      family = "Hu",
                      role = "aut"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"))
as necessary.

The Description field contains
  Also see Hu and Tak (2020) <arXiv:2005.08049>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'Hmisc', 'ergm'

Package suggested but not available for checking: ‘sspse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dataverse’

Packages suggested but not available for checking:
  'DIDmultiplegt', 'broom.mixed', 'CausalQueries', 'rstanarm'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aaron J. Baraff <ajbaraff@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aaron", "J."),
                    family = "Baraff",
                    role = c("aut", "cre"),
                    email = "ajbaraff@uw.edu")
as necessary.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Kisung",
                      family = "You",
                      role = "aut"),
               person(given = c("Sujit", "K."),
                      family = "Ghosh",
                      role = "aut"),
               person(given = "Bingyue",
                      family = "Su",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Suh",
                      role = "aut"),
               person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"))
as necessary.
Running massageExamples to create ‘rdwd-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpCd79UD/file139a0677bf4036/dirDWD.R': No space left on device
Execution halted
 NONE
Running examples in ‘reactable-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: reactableLang
> ### Title: Language options
> ### Aliases: reactableLang
> 
> ### ** Examples
> 
> reactable(
+   iris[1:30, ],
+   searchable = TRUE,
+   paginationType = "simple",
+   language = reactableLang(
+     searchPlaceholder = "Search...",
+     noData = "No entries found",
+     pageInfo = "{rowStart}\u2013{rowEnd} of {rows} entries",
+     pagePrevious = "\u276e",
+     pageNext = "\u276f",
+ 
+     # Accessible labels for assistive technology, such as screen readers
+     pagePreviousLabel = "Previous page",
+     pageNextLabel = "Next page"
+   )
+ )
Warning in dir.create(www_dir) :
  cannot create dir '/tmp/Rtmp1RawLc/viewhtml12c5c973d318cb', reason 'No space left on device'
Error in normalizePath(dirname(file), mustWork = TRUE) : 
  path[1]="/tmp/Rtmp1RawLc/viewhtml12c5c973d318cb": No such file or directory
Calls: <Anonymous> ... html_print -> save_html -> save_html.default -> normalizePath
Execution halted
Package required but not available: ‘tidync’

Package suggested but not available for checking: ‘skimr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘labelled’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhadip",
                    family = "Datta",
                    role = c("aut", "cre"),
                    email = "subhadipdatta007@gmail.com")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpYbMx2D/Rf12c8cf24265e9a': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘design_principle.Rmd’ using rmarkdown

Quitting from design_principle.Rmd:128-153 [login]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'DiagrammeR'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'design_principle.Rmd' failed with diagnostics:
there is no package called 'DiagrammeR'
--- failed re-building ‘design_principle.Rmd’

--- re-building ‘install_drivers.Rmd’ using rmarkdown
--- finished re-building ‘install_drivers.Rmd’

--- re-building ‘query_parameters.Rmd’ using rmarkdown
--- finished re-building ‘query_parameters.Rmd’

--- re-building ‘readepi.Rmd’ using rmarkdown
--- finished re-building ‘readepi.Rmd’

SUMMARY: processing the following file failed:
  ‘design_principle.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasper",
                    family = "Kristensen",
                    role = c("aut", "cre"),
                    email = "kaskr@dtu.dk")
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpCOEunO/file12acd02271594a/readHAC-package.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Clemens Druee <druee@uni-trier.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Clemens",
                      family = "Druee",
                      role = c("aut", "cre"),
                      email = "druee@uni-trier.de"),
               person(given = "Universitaet",
                      family = "Trier",
                      role = "aut"))
as necessary.

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
checkRd: (-1) ReAD.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
checkRd: (-1) em_hmm.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
Warning in dir.create(filedir) :
  cannot create dir '/tmp/Rtmpkvddi1/file134b1a78391dee', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpkvddi1/file134b1a78391dee/as.caldays.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘dataverse’

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmphfJf8o/file14676f5c479be5': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmphfJf8o/file14676f5c479be5': No such file or directory
Error in file(con, "r") : cannot open the connection
Package required but not available: ‘janitor’

Package suggested but not available for checking: ‘geobr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'imputeTS', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'ggpubr', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wesley",
                      family = "Graybill",
                      role = "aut"),
               person(given = "Mingli",
                      family = "Chen",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"),
               person(given = "Alfred",
                      family = "Galichon",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Wieland <thomas.wieland.geo@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.geo@googlemail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Automotive.Rd:29: Lost braces
    29 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). Own postprocessing.
       |                                                           ^
checkRd: (-1) Automotive.Rd:33: Lost braces
    33 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). 
       |                                                           ^
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘RNGMIX.Theta-class.Rd’, ‘SSE.Rd’, ‘adult.Rd’, ‘bearings.Rd’, ‘bins.Rd’, ‘chistogram.Rd’, ‘demix.Rd’, ‘dfmix.Rd’, ‘fhistogram.Rd’
Maintainer: ‘Richard Cotton <richierocks@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Louis Raimbault <Louis.Raimbault@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Louis",
                      family = "Raimbault",
                      role = c("aut", "cre"),
                      email = "louis.raimbault@icloud.com"),
               person(family = "A.Mokkadem",
                      role = "aut"),
               person(family = "M.Pelletier",
                      role = "aut"))
as necessary.

The Description field contains
  Raimbault (2020) <arXiv:2011.14195>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/LouisRaimbault/RecAssoRules-R
which should likely be
  https://github.com/LouisRaimbault/RecAssoRules-R/issues
instead.
sh: 1: cannot create /tmp/RtmpSgeWXR/xshell13809273522050: No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpSgeWXR/xshell13809273522050': No such file or directory
Error in file(con, "r") : cannot open the connection
Execution halted
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/Rtmpfw2vMp/Rd2pdf12d3ca2771596c/Rd2.tex': No such file or directory
Error in file(outfile, "wt") : cannot open the connection
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(recforest)
  > 
  > test_check("recforest")
  Error in `source_dir()`:
  ! Failed to evaluate './setup_data_for_unit_tests.R'.
  Caused by error in `find.package()`:
  ! there is no package called 'frailtypack'
  Backtrace:
       ▆
    1. ├─testthat::test_check("recforest")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_setup(".", env)
    7. │           └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(...)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       └─utils::data(readmission, package = "frailtypack") at ./setup_data_for_unit_tests.R:1:1
   15. │                         └─base::find.package(package, lib.loc, verbose = verbose)
   16. │                           └─base::stop(packageNotFoundError(bad, lib.loc, sys.call()))
   17. └─testthat (local) `<fn>`(`<pckgNtFE>`)
   18.   └─cli::cli_abort(...)
   19.     └─rlang::abort(...)
  Execution halted
Checking relative paths failed with message:
  cannot open the connection
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/recipes.Rcheck/00install.out’ for details.
Running examples in ‘reclin2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: select_greedy.cluster_pairs
> ### Title: Select matching pairs enforcing one-to-one linkage
> ### Aliases: select_greedy.cluster_pairs select_n_to_m.cluster_pairs
> ###   select_greedy select_greedy.pairs select_n_to_m select_n_to_m.pairs
> 
> ### ** Examples
> 
> data("linkexample1", "linkexample2")
> pairs <- pair_blocking(linkexample1, linkexample2, "postcode")
> pairs <- compare_pairs(pairs, c("lastname", "firstname", "address", "sex"))
> model <- problink_em(~ lastname + firstname + address + sex, data = pairs)
> pairs <- predict(model, pairs, type = "mpost", add = TRUE, binary = TRUE)
> 
> # Select pairs with a mpost > 0.5 and force one-to-one linkage
> pairs <- select_n_to_m(pairs, "ntom", "mpost", 0.5)
> pairs <- select_greedy(pairs, "greedy", "mpost", 0.5)
> table(pairs$ntom, pairs$greedy)
       
        FALSE TRUE
  FALSE    13    1
  TRUE      1    2
> 
> # The same example as above using a cluster;
> library(parallel)
> cl <- makeCluster(2)
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Error in makePSOCKcluster(names = spec, ...) : 
  Cluster setup failed. 2 of 2 workers failed to connect.
Calls: makeCluster -> makePSOCKcluster
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpmzJGAf/ltx1e95461031f967/compare_pairs.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Running massageExamples to create ‘recluster-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/Rtmp9uQ6NM/file1476336addaf91', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/Rtmp9uQ6NM/file1476336addaf91/biodecrypt.R': No such file or directory
Execution halted
 NONE
No examples, no tests, no vignettes
Checking relative paths failed with message:
  inferior call failed
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
checkRd: (-1) recombinator.Rd:32-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) recombinator.Rd:35-38: Lost braces in \enumerate; meant \describe ?
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpoxBzay/file13787c6c9fa7cf': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpoxBzay/file13787c6c9fa7cf': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

Found the following (possibly) invalid file URI:
  URI: michael@hahsler.net
    From: inst/doc/recommenderlab.pdf
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Os",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Maintainer: ‘Magdalena Chrapek <Magdalena.Chrapek@ujk.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Magdalena",
                    family = "Chrapek",
                    role = c("aut", "cre"),
                    email = "magdalena.chrapek@ujk.edu.pl")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Error(s) in re-building vignettes:
  ...
--- re-building ‘RecordTest.Rmd’ using rmarkdown

Quitting from RecordTest.Rmd:10-31 [loadLibs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggpubr'
---
Backtrace:
    ▆
 1. └─base::library(ggpubr)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RecordTest.Rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘RecordTest.Rmd’

SUMMARY: processing the following file failed:
  ‘RecordTest.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "David",
                      family = "Cortes",
                      role = "aut"),
               person(given = "Chih-Jen",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yu-Chin",
                      family = "Juan",
                      role = "aut"),
               person(given = "Wei-Sheng",
                      family = "Chin",
                      role = "aut"),
               person(given = "Yong",
                      family = "Zhuang",
                      role = "aut"),
               person(given = "Bo-Wen",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Meng-Yuan",
                      family = "Yang",
                      role = "aut"),
               person(given = c("other", "contributors.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Rd conversion errors:
Warning in file(outfile, "wt") :
  cannot open file '/tmp/RtmpwbAlXK/Rd2pdf134d3c2431cc1f/Rd2.tex': No space left on device
Error in file(outfile, "wt") : cannot open the connection
Package required but not available: ‘geepack’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpHwzvgl/Rf139bfb390d821': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'gtsummary', 'haven'

Package suggested but not available for checking: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'janitor', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘redSolve.R’
Error(s) in re-building vignettes:
  ...
--- re-building ‘tutorial.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpRGG6fy/Rf139ccc35010448': No space left on device

Quitting from tutorial.Rmd:19-24 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from tutorial.Rmd:19-24 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Ivan Rivera <ivan.s.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Rivera",
                    role = c("aut", "cre"),
                    email = "ivan.s.rivera@gmail.com")
as necessary.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Maintainer: ‘Siddhartha Kundu <siddhartha_kundu@aiims.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siddhartha",
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "2021:ManuscriptUnderPreparation")
as necessary.
Running massageExamples to create ‘redist-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmphyEHKO/file146079f123f9f/EPSG.R': No space left on device
Execution halted
 NONE
Packages required but not available: 'geomander', 'alarmdata', 'baf'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpByHpsP/Rf139ad335fc2f81': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpC3MbGY/file13d9d12a694023': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpC3MbGY/file13d9d12a694023': No such file or directory
Error in file(con, "r") : cannot open the connection
Running massageExamples to create ‘redoc-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/RtmpA48HY6/file139abb26b3a656', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/RtmpA48HY6/file139abb26b3a656/redoc_index.R': No such file or directory
Execution halted
 NONE
Packages required but not available: 'dbplyr', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BAT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Finnegan <dan.finnegan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Finnegan",
                    role = c("aut", "cre"),
                    email = "dan.finnegan@gmail.com")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) make_refreshable.Rd:13: Lost braces
    13 | not that quotes need to be escaped (code{\"}).}
       |                                         ^
Package required but not available: ‘refund’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'refund'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘William Belzak <wbelzak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Belzak",
                    role = c("aut", "cre"),
                    email = "wbelzak@gmail.com")
as necessary.
Rd conversion errors:
Warning in dir.create(latexdir) :
  cannot create dir '/tmp/RtmpGujjFy/ltx14910260e258e8', reason 'No space left on device'
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpGujjFy/ltx14910260e258e8/Estep.tex': No such file or directory
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Daniel Antal <daniel.antal@ceemid.eu>’

The BugReports field in DESCRIPTION has
  https://github.com/rOpenGov/regions
which should likely be
  https://github.com/rOpenGov/regions/issues
instead.
Maintainer: ‘David Meyer <David.Meyer@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "david.meyer@r-project.org")
as necessary.
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(regmedint)
  > 
  > test_check("regmedint")
  Saving _problems/test-08_regmedint_class_user_methods-21.R
  [ FAIL 1 | WARN 0 | SKIP 18 | PASS 23 ]
  
  ══ Skipped tests (18) ══════════════════════════════════════════════════════════
  • {geepack} is not installed. (1): 'test-04_fit_yreg_loglinear.R:10:1'
  • {tidyverse} is not installed. (17): 'test-01_regmedint_class_ui.R:10:1',
    'test-03_fit_mreg.R:11:1', 'test-04_fit_yreg_linear.R:11:1',
    'test-04_fit_yreg_logistic.R:11:1', 'test-04_fit_yreg_negbin.R:11:1',
    'test-04_fit_yreg_poisson.R:11:1', 'test-04_fit_yreg_survAFT_exp.R:11:1',
    'test-04_fit_yreg_survAFT_weibull.R:11:1', 'test-04_fit_yreg_survCox.R:11:1',
    'test-05_calc_myreg.R:11:1', 'test-06_calc_myreg_helpers_coef.R:11:1',
    'test-06_calc_myreg_helpers_vcov.R:11:1',
    'test-07_calc_myreg_mreg_linear_yreg_linear.R:11:1',
    'test-07_calc_myreg_mreg_linear_yreg_logistic.R:11:1',
    'test-07_calc_myreg_mreg_logistic_yreg_linear.R:11:1',
    'test-07_calc_myreg_mreg_logistic_yreg_logistic.R:11:1',
    'test-09_cross_check_with_sas_macro.R:10:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-08_regmedint_class_user_methods.R:16:5'): methods for regmedint ──
  <functionNotFoundError/objectNotFoundError/error/condition>
  Error in `mutate(., male = if_else(sex == "m", 1L, 0L), status = if_else(status == 0, 0L, 1L), bili_bin = if_else(bili > median(bili), 1L, 0L), alk_phos = alk.phos)`: could not find function "mutate"
  Backtrace:
      ▆
   1. └─pbc[complete.cases(pbc), ] %>% ... at test-08_regmedint_class_user_methods.R:16:5
  
  [ FAIL 1 | WARN 0 | SKIP 18 | PASS 23 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘broom.helpers’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DHARMa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
checkRd: (-1) fbase1.binomial.Rd:32: Lost braces; missing escapes or markup?
    32 | In all base log-likelihood functions, we have dropped any additive terms that are independent of the distribution parameter, e.g. constant terms or those terms that are dependent on the response variable only. This is done for computational efficiency. Therefore, these functions cannot be used to obtain the absolute values of log-likelihood functions but only in the context of optimization and/or sampling. Users can write thin wrappers around these functions to add the constant terms to the function value. (Derivatives do not need correction. For binomial family, all factorial terms are ignored since they only depend on \code{n} and {y}.)
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
Packages required but not available: 'loadeR', 'traineR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pawel Teisseyre <teisseyrep@ipipan.waw.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pawel",
                      family = "Teisseyre",
                      role = c("aut", "cre"),
                      email = "teisseyrep@ipipan.waw.pl"),
               person(given = c("Robert", "A."),
                      family = "Klopotek",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘short_intro.Rmd’ using knitr

Quitting from short_intro.Rmd:44-46 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'semPlot'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'short_intro.Rmd' failed with diagnostics:
there is no package called 'semPlot'
--- failed re-building ‘short_intro.Rmd’

SUMMARY: processing the following file failed:
  ‘short_intro.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Yanming Di<diy@stat.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yanming",
                    family = "Di",
                    role = c("aut", "cre"),
                    email = "diy@stat.oregonstate.edu")
as necessary.
Package required but not available: ‘car’

Packages suggested but not available for checking:
  'cdparcoord', 'keras', 'partools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Calli Gross <calli@calligross.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Calli",
                    family = "Gross",
                    role = c("aut", "cre"),
                    email = "calli@calligross.de")
as necessary.
Packages required but not available: 'ggpubr', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mark S. Handcock <handcock@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mark", "S."),
                    family = "Handcock",
                    role = c("aut", "cre"),
                    email = "handcock@stat.ucla.edu")
as necessary.
Package required but not available: ‘densEstBayes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘EstimationTools’

Package suggested but not available for checking: ‘alr4’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Miguel Rodríguez Asensio <miguel.rodriguezasensio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miguel", "Rodríguez"),
                    family = "Asensio",
                    role = c("aut", "cre"),
                    email = "miguel.rodriguezasensio@gmail.com")
as necessary.
checkRd: (-1) polarizacion_Dalton.Rd:26: Lost braces; missing escapes or markup?
    26 | {Pd = sqrt(sum(p_j*(x_j-mean(x_p))/4.5)^2)}
       | ^
checkRd: (-1) reparto_div.Rd:37: Lost braces; missing escapes or markup?
    37 | The set of divisors is formed by the odd numbers, that is {1,3,..,2n+1}.
       |                                                           ^
Maintainer: ‘Werner A. Stahel <stahel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Werner", "A."),
                    family = "Stahel",
                    role = c("aut", "cre"),
                    email = "stahel@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Carter T. Butts <buttsc@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carter", "T."),
                    family = "Butts",
                    role = c("aut", "cre"),
                    email = "buttsc@uci.edu")
as necessary.
Package required but not available: ‘sna’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander I. Jordan <alexander.jordan@h-its.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ReliaPlotR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Hernandez <michael@hernandez.ai>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Hernandez",
                      role = c("aut", "cre"),
                      email = "micahel@hernandez.ai"),
               person(given = "Yuri",
                      family = "Balasanov",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Firth <d.firth@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Firth", "with", "contributions", "from", "Heather"),
                      family = "Turner",
                      role = "aut"),
               person(given = "John",
                      family = "Fox",
                      role = "aut"),
               person(given = "David",
                      family = "Firth",
                      role = "cre",
                      email = "d.firth@warwick.ac.uk"))
as necessary.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘James M. Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("James", "M."),
                    family = "Curran",
                    role = c("aut", "cre"),
                    email = "j.curran@auckland.ac.nz")
as necessary.
Package required but not available: ‘pammtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_to_remap.Rmd’ using rmarkdown

Quitting from Introduction_to_remap.Rmd:124-141 [lm_huc2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `Ops.units()`:
! both operands of the expression should be "units" objects
---
Backtrace:
     ▆
  1. ├─base::mean((utsnz$WESD - exp(predict(lm_huc2, utsnz, smooth = 10)))^2)
  2. ├─stats::predict(lm_huc2, utsnz, smooth = 10)
  3. └─remap:::predict.remap(lm_huc2, utsnz, smooth = 10)
  4.   ├─base::`[<-`(...)
  5.   ├─units:::`[<-.units`(...)
  6.   ├─base::NextMethod()
  7.   ├─base::t(...)
  8.   └─base::apply(...)
  9.     └─remap (local) FUN(newX[, i], ...)
 10.       └─units:::Ops.units(x, as.numeric(smooth))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Introduction_to_remap.Rmd' failed with diagnostics:
both operands of the expression should be "units" objects
--- failed re-building ‘Introduction_to_remap.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_remap.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Package required but not available: ‘fda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tony Wang <xwang@imedacs.com>’

The Description field contains
  <arXiv:2203.02771>. Methods for missing-not-at-random include
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rEMM.Rnw’ using Sweave
Warning in file() :
  cannot open file '/tmp/RtmpfEGB3k/Rf10ba7417d6360': No space left on device
Error: processing vignette 'rEMM.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘rEMM.Rnw’

SUMMARY: processing the following file failed:
  ‘rEMM.Rnw’

Error: Vignette re-building failed.
Execution halted
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘remstats-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmphvz6Zt/file146755628ad0a8/maximum.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/RtmppYAQfJ/ltx1512166e857e4b/receive.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Error(s) in re-building vignettes:
  ...
--- re-building ‘rem-pipeline.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpEpB5FB/Rf14512d277dca7': No space left on device

Quitting from rem-pipeline.Rmd:337-348 [exo-tie]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from rem-pipeline.Rmd:337-348 [exo-tie]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rem-pipeline.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘rem-pipeline.Rmd’

SUMMARY: processing the following file failed:
  ‘rem-pipeline.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX ....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp1XR493/ltx147a6c294b499e/table8.3.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘AER’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nathan Bengaouer <nathan.bengaouer@asnr.fr>’

Found the following (possibly) invalid file URI:
  URI: works.bepress.com/ted_bergstrom/98
    From: inst/doc/RenextGuide.pdf
Maintainer: ‘Miguel F. Acevedo <acevedo@unt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miguel", "F."),
                    family = "Acevedo",
                    role = c("aut", "cre"),
                    email = "acevedo@unt.edu")
as necessary.
Maintainer: ‘Minji Lee <minjilee101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minji",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "minjilee101@gmail.com"),
               person(given = "Zhihua",
                      family = "Su",
                      role = "aut"))
as necessary.
Maintainer: ‘Jordan Hayes <jhayes@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jordan",
                    family = "Hayes",
                    role = c("aut", "cre"),
                    email = "jhayes@ucr.edu")
as necessary.
Maintainer: ‘Juan Carlos Aledo <caledo@uma.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Carlos"),
                    family = "Aledo",
                    role = c("aut", "cre"),
                    email = "caledo@uma.es")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Gourav Kumar Vani <kumaragri.vani1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gourav", "Kumar"),
                      family = "Vani",
                      role = c("aut", "cre"),
                      email = "kumaragri.vani1@gmail.com"),
               person(given = c("Dr.", "Vivek"),
                      family = "Badhe",
                      role = "aut",
                      email = "vivekbadhe.jbp@gmail.com"))
as necessary.
Packages required but not available: 'netmeta', 'Seurat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘repeated-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpbHpOXw/file14cffd119c2f80/biv.binom.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
checkRd: (-1) twosidedPValuestobins.Rd:84: Lost braces; missing escapes or markup?
    84 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
checkRd: (-1) ztobins.Rd:90: Lost braces; missing escapes or markup?
    90 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpX3gTGs/libloc_216_4b2a3c4b2ff61586.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> ... rownames -> %||% -> <Anonymous> -> saveRDS -> gzfile
Execution halted
Packages required but not available: 'xportr', 'Hmisc', 'haven'

Package suggested but not available for checking: ‘admiral’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pbkrtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘spatstat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.
Maintainer: ‘Samuel Pawel <samuel.pawel@uzh.ch>’

Found the following (possibly) invalid file URI:
  URI: psyarxiv.com/n2a9x
    From: inst/doc/ReplicationSuccess.pdf
Maintainer: ‘Dzmitry G Batrakou <d.batrakou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dzmitry", "G"),
                    family = "Batrakou",
                    role = c("aut", "cre"),
                    email = "d.batrakou@gmail.com")
as necessary.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nick Parsons <nick.parsons@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Parsons",
                    role = c("aut", "cre"),
                    email = "nick.parsons@warwick.ac.uk")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking:
  'geepack', 'mice', 'tidycmprsk'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Daniel Fischer <daniel.fischer@luke.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Fischer",
                      role = c("aut", "cre"),
                      email = "daniel.fischer@luke.fi"),
               person(given = "Alain",
                      family = "Berro",
                      role = "aut"),
               person(given = "Klaus",
                      family = "Nordhausen",
                      role = "aut"),
               person(given = "Anne",
                      family = "Ruiz-Gazen",
                      role = "aut"))
as necessary.
Running examples in ‘REPPlab-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EPPlab
> ### Title: Function for Exploratory Projection Pursuit.
> ### Aliases: EPPlab
> 
> ### ** Examples
> 
> 
>   library(tourr)
Error in library(tourr) : there is no package called ‘tourr’
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/REPPlabShiny.Rcheck/00install.out’ for details.
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate_impact.R’ ‘plot_repsd.R’ ‘repsd_pval.R’
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Fatal error: cannot create 'R_TempDir'
Running massageExamples to create ‘rerandPower-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/Rtmplva2j6/file1490bc3ee80c74/power.rerand.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
checkRd: (-1) NCBirths2004.Rd:16: Lost braces
    16 |     \item{\code{Smoker}}{Mother a smoker? code{No}, \code{Yes}}
       |                                               ^
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘TXBirths2004.Rd’, ‘Titanic.Rd’, ‘Turbine.Rd’, ‘Verizon.Rd’, ‘Volleyball2009.Rd’, ‘Walleye.Rd’
Maintainer: ‘Tim Hesterberg <timhesterberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Hesterberg",
                    role = c("aut", "cre"),
                    email = "timhesterberg@gmail.com")
as necessary.
checkRd: (-1) ExpandProbs.Rd:35: Lost braces; missing escapes or markup?
    35 |      {z_probs2 sqrt((n-1)/n) = t_probs,n-1}
       |      ^
Rd conversion errors:
Converting parsed Rd's to LaTeX ..Warning in file() :
  cannot open file '/tmp/Rtmp4MbNci/Rf1f0edf142c205d': No space left on device
Warning in file() :
  cannot open file '/tmp/Rtmp4MbNci/Rf1f0edf3102615c': No space left on device
Error in file() : cannot open the connection
Maintainer: ‘Thomas Ferte <thomas.ferte@u-bordeaux.fr>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'ggpubr', 'janitor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sean Turner <swd.turner@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Konstantin Hopf <konstantin.hopf@uni-bamberg.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘bestNormalize’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'ggraph', 'tidygraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘car’

Packages suggested but not available for checking:
  'geepack', 'glmmTMB', 'glmtoolbox', 'regtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) resistance.Rd:52: Lost braces
    52 |     \item B. Bollob\'{a}s, 1998.  \emph{Modern Graph Theory}.  Springer.
       |                      ^
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Package required but not available: ‘flexsurv’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ben Waxer <bwaxer@auriq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Waxer",
                    role = c("aut", "cre"),
                    email = "bwaxer@auriq.com")
as necessary.

The Description field contains
  http://www.auriq.com/documentation/source/install/index.html.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Dmitry Selivanov <selivanov.dmitriy@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#RestRserve_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Fatal error: cannot create 'R_TempDir'
Packages required but not available: 'DatabaseConnector', 'dbplyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_result.Rd’ ‘bind.R’ ‘bind.Rd’ ‘result.R’ ‘result.Rd’
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Packages required but not available: 'tidyverse', 'SHAPforxgboost'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘spectrogram.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpwIkdGL/Rf152ea457f78e4e': No space left on device

Quitting from spectrogram.Rmd:21-26 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from spectrogram.Rmd:21-26 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spectrogram.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘spectrogram.Rmd’

SUMMARY: processing the following file failed:
  ‘spectrogram.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'dataset', 'haven', 'labelled'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Koohafkan",
                    role = c("aut", "cre"),
                    email = "michael.koohafkan@gmail.com")
as necessary.
Package required but not available: ‘boot.pval’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'BSgenome', 'ensembldb'

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75',
  'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ggtree', 'ggimage'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘officer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'car', 'systemfit'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) saveRev.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{use_wd}{logical - If TRUE, the history will be prepended by setwd({'users current working directory'}). This function will set the script's working directory to
       |                                                                         ^
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_an_exercise.Rd’ ‘define_exercises.Rd’
    ‘define_exercises_from_csv.Rd’ ‘define_exercises_from_excel.Rd’
Found the following file with non-ASCII characters:
  Fatal error: cannot create 'R_TempDir'
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
Maintainer: ‘Kenneth Vernon <kenneth.b.vernon@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Pablo Barbera <pbarbera@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Barbera",
                      role = c("aut", "cre"),
                      email = "pbarbera@usc.edu"),
               person(given = "Michael",
                      family = "Piccirilli",
                      role = "aut",
                      email = "mrp2181@columbia.edu"),
               person(given = "Andrew",
                      family = "Geisler",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FSA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ankur",
                      family = "Chakravarthy",
                      role = c("aut", "cre"),
                      email = "ankur.chakravarthy.10@ucl.ac.uk"),
               person(family = "PhD",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Checking relative paths failed with message:
  inferior call failed
Maintainer: ‘Shangzhi Hong <shangzhi-hong@hotmail.com>’

The Description field contains
  <arXiv:2004.14823>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘duckdbfs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘RFishBC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aStandard
> ### Title: Finds standard intercept (a) for Fraser-Lee back-calculation
> ###   model for a particular species.
> ### Aliases: aStandard
> ### Keywords: manip
> 
> ### ** Examples
> 
> aStandard("Bluegill")
Error in loadNamespace(x) : there is no package called ‘FSA’
Calls: aStandard ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Karthik Ram <karthik.ram@gmail.com>’

The Description field contains
  of the 'rOpenSci' suite (http://ropensci.org).
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘John Kloke <johndkloke@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Kloke",
                      role = c("aut", "cre"),
                      email = "johndkloke@gmail.com"),
               person(given = "Joseph",
                      family = "McKean",
                      role = "aut"))
as necessary.
Maintainer: ‘Matthias Kohl <Matthias.Kohl@stamats.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dimitri",
                      family = "Justeau-Allaire",
                      role = c("aut", "cre"),
                      email = "dimitri.justeau@gmail.com"),
               person(given = "Grégoire",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Ibanez",
                      role = "aut"),
               person(given = "Xavier",
                      family = "Lorca",
                      role = "aut"),
               person(given = "Ghislain",
                      family = "Vieilledent",
                      role = "aut"),
               person(given = "Philippe",
                      family = "Birnbaum",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpWuhniC/Rf1513aa24cbb354': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rfPermute.Rcheck/00install.out’ for details.
Packages required but not available: 'bestNormalize', 'DHARMa', 'rstatix'

Package suggested but not available for checking: ‘pbkrtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘Rfuzzycoco-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fuzzy_coco_parsnip
> ### Title: parsnip model function
> ### Aliases: fuzzy_coco_parsnip
> 
> ### ** Examples
> 
> spec <- fuzzy_coco_parsnip("regression",  params = example_mtcars()$params, seed = 123)
Error in loadNamespace(x) : there is no package called ‘parsnip’
Calls: fuzzy_coco_parsnip ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Markus Loecher <Markus.Loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Loecher",
                    role = c("aut", "cre"),
                    email = "Markus.Loecher@gmail.com")
as necessary.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpG4EFT8/ltx18f1ac3f26a04e/DownReq.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Joseph Kelly <josephkelly@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joseph",
                      family = "Kelly",
                      role = c("aut", "cre"),
                      email = "josephkelly@post.harvard.edu"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = "aut"),
               person(given = "Carl",
                      family = "Morris",
                      role = "aut"))
as necessary.
Package required but not available: ‘caret’

Package suggested but not available for checking: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristian Quiroz-Moreno <cristianquirozd1997@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrew Brown <brown.andrewg@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
error: Failed to write to the client cache
  Caused by: No space left on device (os error 28) at path "/tmp/check-CRAN-regular-hornik/cache/R/reticulate/uv/cache/simple-v21/pypi/.tmpdpw6Fp"
uv error code: 2
-- Current requirements -------------------------------------------------
 Python:   3.12.13 (reticulate default)
 Packages: numpy, earthengine-api, geedim, google-auth
-------------------------------------------------------------------------
Hint: If you are temporarily offline, try setting `Sys.setenv(UV_OFFLINE=1)`.
Error in uv_get_or_create_env() : 
  Call `py_require()` to remove or replace conflicting requirements.
rgeedim v0.4.0 -- using geedim <Not Initialized> w/ earthengine-api <Not Initialized>

It looks like this package has a loading problem: see the messages for
details.
Package required but not available: ‘leafem’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
checkRd: (-1) GenDataPopulation.Rd:21: Lost braces
    21 | {data}{Population of data}
       |       ^
checkRd: (-1) GenDataSample.Rd:23: Lost braces
    23 | {data}{Sample of data}
       |       ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘precipitation_stochastic_generation_v8.Rmd’ using rmarkdown

Quitting from precipitation_stochastic_generation_v8.Rmd:52-63 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'mapview'
---
Backtrace:
    ▆
 1. └─base::library(mapview)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'precipitation_stochastic_generation_v8.Rmd' failed with diagnostics:
there is no package called 'mapview'
--- failed re-building ‘precipitation_stochastic_generation_v8.Rmd’

SUMMARY: processing the following file failed:
  ‘precipitation_stochastic_generation_v8.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Maintainer: ‘Lorenzo Rimella <lorenzo.rimella@hotmail.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenzo",
                    family = "Rimella",
                    role = c("aut", "cre"),
                    email = "lorenzo.rimella@hotmail.it")
as necessary.
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

The Description field contains
  Miolane et al. (2020) <arXiv:2004.04667>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jose Miguel Cotes Torres <jmcotes@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "Miguel", "Cotes", "Torres.", "Universidad", "Nacional", "de", "Colombia", "-", "Sede"),
                      family = "Medellin",
                      role = "aut"),
               person(given = c("Jose", "Miguel", "Cotes"),
                      family = "Torres",
                      role = "cre",
                      email = "jmcotes@unal.edu.co"))
as necessary.
Maintainer: ‘Virgilio Gómez-Rubio <virgilio.gomez@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("María", "José"),
                      family = "Haro-Delicado",
                      role = "aut"),
               person(given = "Virgilio",
                      family = "Gómez-Rubio",
                      role = c("aut", "cre"),
                      email = "virgilio.gomez@uclm.es"),
               person(given = "Francisco",
                      family = "Parreńo-Torres",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Maintainer: ‘Danail Obreschkow <danail.obreschkow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danail",
                    family = "Obreschkow",
                    role = c("aut", "cre"),
                    email = "danail.obreschkow@gmail.com")
as necessary.
Warning: 'rgl.init' failed, will use the null device.
See '?rgl.useNULL' for ways to avoid this warning.

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Authorization required, but no authorization protocol specified
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpN2V0fh/file18a8a25826660/cube3d.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘modelr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Jalpa Joshi Dave <jalpa@tatvic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jalpa", "Joshi"),
                    family = "Dave",
                    role = c("aut", "cre"),
                    email = "jalpa@tatvic.com")
as necessary.
Maintainer: ‘Marcin Szymanski <ms32035@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcin",
                    family = "Szymanski",
                    role = c("aut", "cre"),
                    email = "ms32035@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Author field differs from that derived from Authors@R
  Author:    ‘Michal Bojanowski [aut, cre] (<https://orcid.org/0000-0001-7503-852X>, Kozminski University), David Schoch [aut] (<https://orcid.org/0000-0003-2952-4812>)’
  Authors@R: ‘Michal Bojanowski [aut, cre] (ORCID: <https://orcid.org/0000-0001-7503-852X>, affil: Kozminski University), David Schoch [aut] (ORCID: <https://orcid.org/0000-0003-2952-4812>)’
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘from_sparse6.Rd’, ‘graph_as_text.Rd’, ‘igraph_from_text.Rd’, ‘is_graph6.Rd’, ‘network_from_text.Rd’
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Package required but not available: ‘tidygraph’

Package suggested but not available for checking: ‘ggraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) code_sawtooth_design.Rd:53: Lost braces
    53 | /url{http://www.sawtoothsoftware.com/help/lighthouse-studio/manual/index.html?hid_web_cbc_exporting.html}
       |     ^
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Package required but not available: ‘janitor’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yichuan Bai <ycbai@iastate.edu>’

The Description field contains
  <arXiv:2307.12325>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam Mantz <amantz@slac.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Mantz",
                    role = c("aut", "cre"),
                    email = "amantz@slac.stanford.edu")
as necessary.
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gerry Tonkin-Hill <g.tonkinhill@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction.Rmd’ using rmarkdown

Quitting from introduction.Rmd:39-46 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggtree'
---
Backtrace:
    ▆
 1. └─base::library(ggtree)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'ggtree'
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Victhor Sartório <victhor@dme.ufrj.br>’

The Description field contains
  See Neal (2017) <arXiv:1701.02434> for further details on Hamiltonian
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running massageExamples to create ‘rhmc-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmphvRuJj/file157c704a4ab596/hmc.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rezgar", "Arabzadeh;", "Shahab"),
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = "cre",
                      email = "rezgararabzadeh@ut.ac.ir"))
as necessary.
Packages required but not available: 'Hmisc', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shonosuke Sugasawa <shonosuke622@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shonosuke",
                    family = "Sugasawa",
                    role = c("aut", "cre"),
                    email = "shonosuke622@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
checkRd: (-1) GenerateClusterData.Rd:34: Lost braces; missing escapes or markup?
    34 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2},
       |                                                ^
checkRd: (-1) GenerateClusterData.Rd:35: Lost braces; missing escapes or markup?
    35 | -v_{(numberOfClusters-1)/2} (if \code{numberOfClusters} is odd)
       |    ^
checkRd: (-1) GenerateClusterData.Rd:36: Lost braces; missing escapes or markup?
    36 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2}
       |                                                ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:25-26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:27-28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:29-30: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:31-32: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:33-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:35-36: Lost braces
    35 |    \item{pam_cluster_64_7_5715},{N=64, seven clusters with 5715 vectors per
       |                                 ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:37-38: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:39-40: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Ei-ji Nakama <nakama@ki.rim.or.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junji",
                      family = "NAKANO",
                      role = "aut",
                      email = "nakanoj@ism.ac.jp"),
               person(given = "Ei-ji",
                      family = "Nakama",
                      role = c("aut", "cre"),
                      email = "nakama@ki.rim.or.jp"))
as necessary.
Package required but not available: ‘lomb’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rIACI.Rcheck/00install.out’ for details.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘loadFile.Rd’, ‘loadObject.Rd’, ‘loadObjectInEnv.Rd’, ‘loadRDS.Rd’, ‘longdf2gctMatrix.Rd’, ‘optional_suppress_warning.Rd’, ‘print.GctMatrix.Rd’, ‘readMatrix.Rd’, ‘readTable.Rd’, ‘read_ampliseq_bedcovgct.Rd’, ‘read_annotated_ampliseq_amplicons.Rd’, ‘read_bed.Rd’, ‘read_biokit_exprs.Rd’, ‘read_chip.Rd’, ‘read_david.Rd’, ‘read_exprs_matrix.Rd’, ‘read_factor.Rd’
Running massageExamples to create ‘ribiosPlot-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpMPhpLG/file1804bd5f693e51/rowVars.R': No space left on device
Execution halted
 NONE
Running ‘testthat.R’ [8s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ricci)
  > 
  > test_check("ricci")
  Saving _problems/test-tensor_symbols-15.R
  [ FAIL 1 | WARN 0 | SKIP 18 | PASS 142 ]
  
  ══ Skipped tests (18) ══════════════════════════════════════════════════════════
  • On CRAN (18): 'test-covd.R:36:1', 'test-metric_field.R:1:1',
    'test-tensor.R:137:1', 'test-tensor.R:146:1', 'test-tensor.R:170:1',
    'test-tensor.R:188:1', 'test-tensor_arith.R:115:1',
    'test-tensor_arith.R:125:1', 'test-tensor_fields.R:1:1',
    'test-tensor_fields.R:23:1', 'test-tensor_fields.R:35:1',
    'test-tensor_indices.R:1:1', 'test-tensor_ops.R:1:1',
    'test-tensor_ops.R:41:1', 'test-tensor_ops.R:93:1',
    'test-tensor_ops.R:210:1', 'test-tensor_ops.R:218:1',
    'test-tensor_symbols.R:18:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-tensor_symbols.R:12:3'): creating d works ──────────────────────
  Error in `grDevices::pdf(new, ...)`: cannot open file '/tmp/RtmpV7bfcZ/verify_exec_1712a96c91c0c6'
  Backtrace:
      ▆
   1. └─testthat::expect_snapshot(d(3)(i, j, k), error = TRUE) at test-tensor_symbols.R:12:3
   2.   └─testthat:::expect_snapshot_(...)
   3.     ├─testthat:::with_is_snapshotting(...)
   4.     └─testthat:::verify_exec(quo_get_expr(x), quo_get_env(x), replay)
   5.       └─withr::local_pdf(device_path)
   6.         └─grDevices::pdf(new, ...)
  
  [ FAIL 1 | WARN 0 | SKIP 18 | PASS 142 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "LI",
                      role = c("aut", "cre"),
                      email = "ynaulx@gmail.com"),
               person(given = "Linna",
                      family = "MA",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiang",
                    family = "LI",
                    role = c("aut", "cre"),
                    email = "ynaulx@gmail.com")
as necessary.
Packages required but not available: 'heatmaply', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘geomander’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicolas Bennett <r@nbenn.ch>’

Found the following (possibly) invalid URLs:
  URL: %22https://eth-mds.github.io/physionet-demo%22
    From: inst/doc/ricu.pdf
    Message: Invalid URI scheme
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmprUoFh0/Rf1651162301f6c9': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Maintainer: ‘Steffen Moritz <steffen.moritz10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xinyuan Fan <fxy22@mails.tsinghua.edu.cn>’

The Description field contains
  and Wu (2024) <arXiv:2403.00600>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘T4cluster’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/riemtan.Rcheck/00install.out’ for details.
checkRd: (-1) iex.chart.Rd:23: Lost braces; missing escapes or markup?
    23 | r takes only of of the values accepted IN API request. {"5y", "2y", "1y", "ytd", "6m", "3m", "1m", "1d"}
       |                                                        ^
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pavel", "V."),
                      family = "Moskalev",
                      role = c("aut", "cre"),
                      email = "moskalefff@gmail.com"),
               person(given = c("Alexey", "G."),
                      family = "Bukhovets",
                      role = "aut"),
               person(given = c("Tatyana", "Ya."),
                      family = "Biruchinskay",
                      role = "aut"))
as necessary.
Package required but not available: ‘risks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(rigr)
  rigr version 1.0.9: Regression, Inference, and General Data Analysis Tools in R
  > library(car)
  Error in library(car) : there is no package called 'car'
  Execution halted
Error(s) in re-building vignettes:
  ...
Warning in gzfile(file, mode) :
  cannot open compressed file '/tmp/RtmpgFDNCe/file1892db755a973a.rds', probable reason 'No space left on device'
Error in gzfile(file, mode) : cannot open the connection
Calls: <Anonymous> -> saveRDS -> gzfile
Execution halted
Package required but not available: ‘haven’

Package suggested but not available for checking: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joel Carlson <jnkcarlson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joel",
                    family = "Carlson",
                    role = c("aut", "cre"),
                    email = "jnkcarlson@gmail.com")
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
File ‘RInside/libs/RInside.so’:
  Found ‘srand’, possibly from ‘srand’ (C)
    Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
  Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
    ‘R_DefParams’, ‘R_ReplDLLinit’, ‘R_RunExitFinalizers’,
    ‘R_SetParams’, ‘R_SignalHandlers’, ‘R_TempDir’, ‘Rf_endEmbeddedR’,
    ‘Rf_initEmbeddedR’, ‘run_Rmainloop’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Package required but not available: ‘haven’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘opencv-intro.rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpSnwgGg/Rf18a7b46f62ff3f': No space left on device

Quitting from opencv-intro.rmd:141-146 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from opencv-intro.rmd:141-146 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'opencv-intro.rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘opencv-intro.rmd’

SUMMARY: processing the following file failed:
  ‘opencv-intro.rmd’

Error: Vignette re-building failed.
Execution halted
Packages required but not available: 'relsurv', 'tune', 'caret', 'mosaic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘risk.assessr-Ex.R’ failed
Package required but not available: ‘ggpubr’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'spatialsample', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  parity portfolios. <arXiv:1311.4057>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) riskParityPortfolio.Rd:163: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:164: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:165: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:167: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:168: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:169: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:170: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Saralees Nadarajah <mbbsssn2@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "mbbsssn2@manchester.ac.uk"),
               person(given = "Stephen",
                      family = "Chan",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Alexander Gerds <tag@biostat.ku.dk>’

Reading Rd files failed with message:
  cannot open the connection
Packages required but not available: 'rms', 'Hmisc'

Packages suggested but not available for checking:
  'flexsurv', 'pec', 'randomForestSRC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/risks.Rcheck/00install.out’ for details.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘cond_false.Rd’, ‘cond_true.Rd’, ‘cr.Rd’, ‘dec_cor.Rd’, ‘dec_err.Rd’, ‘dec_neg.Rd’
Maintainer: ‘Gregory Pasternack <gpast@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Pasternack",
                      role = c("aut", "cre"),
                      email = "gpast@ucdavis.edu"),
               person(given = "Rafaeli",
                      family = "Arroyo",
                      role = "aut",
                      email = "rtoarroyo@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plotdensity.R’
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘rivernetwork.Rd’, ‘riverpoints.Rd’, ‘routelist.Rd’, ‘segvert2xy.Rd’, ‘sequenceverts.Rd’, ‘setmouth.Rd’, ‘showends.Rd’, ‘smallset.Rd’, ‘splitsegmentat.Rd’, ‘trimriver.Rd’
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Maintainer: ‘Aleksander Mendyk <mfmendyk@cyf-kr.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aleksander",
                      family = "Mendyk",
                      role = c("aut", "cre"),
                      email = "mfmendyk@cyf-kr.edu.pl"),
               person(given = c("with", "contributions", "from", "Sebastian"),
                      family = "Polak.",
                      role = "aut",
                      email = "mfpolak@@cyf-kr.edu.pl"))
as necessary.
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                             ^
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                                                                   ^
Package required but not available: ‘OCNet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gabriela Cohen-Freue <gcohen@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriela",
                      family = "Cohen-Freue",
                      role = c("aut", "cre"),
                      email = "gcohen@stat.ubc.ca"),
               person(given = "Davor",
                      family = "Cubranic",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "B."),
                      family = "Kaufmann",
                      role = "aut"),
               person(given = "R.H.",
                      family = "Zamar",
                      role = "aut"))
as necessary.
Fatal error: cannot create 'R_TempDir'
These lines will be truncated in the PDF manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpUPMGvz/ltx1931b917b63707/mortality.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Packages required but not available: 'dataRetrieval', 'tidyhydat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpwupzPZ/file18ae942e17877e/channel_geom.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRtuJl1/file18f3f022a6678a': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpRtuJl1/file18f3f022a6678a': No such file or directory
Error in file(con, "r") : cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘rxp_py2r.Rd’, ‘rxp_py_file.Rd’, ‘rxp_qmd.Rd’, ‘rxp_r.Rd’, ‘rxp_r2py.Rd’, ‘rxp_r_file.Rd’, ‘rxp_read.Rd’, ‘rxp_rmd.Rd’, ‘rxp_trace.Rd’, ‘rxp_write_dag.Rd’
Maintainer: ‘Jeroen Ooms <jeroen@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeroen",
                      family = "Ooms",
                      role = c("aut", "cre"),
                      email = "jeroen@berkeley.edu"),
               person(given = "Forbes",
                      family = "Lindesay",
                      role = "aut"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

Package installs .java files.
Package has FOSS license, installs .class/.jar but has no 'java' directory.
Found the following possibly unsafe calls:
File ‘rJava/R/import.R’:
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File ‘rJava/R/jinit.R’:
  unlockBinding(x, .env)
  unlockBinding(x, pe)
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
License stub is invalid DCF.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Carlos Prieto <cprietos@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlos",
                      family = "Prieto",
                      role = c("aut", "cre"),
                      email = "cprietos@usal.es"),
               person(given = "David",
                      family = "Barrios",
                      role = "aut",
                      email = "metal@usal.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aaron Schumacher <ajschumacher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Schumacher",
                      role = c("aut", "cre"),
                      email = "ajschumacher@gmail.com"),
               person(given = "Håkon",
                      family = "Malmedal",
                      role = "aut"),
               person(given = "Måns",
                      family = "Magnusson",
                      role = "aut"))
as necessary.
Maintainer: ‘Mateus Maia <mateus.maiamarques@glasgow.ac.uk>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Alain Quartier-la-Tente <alain.quartier@yahoo.fr>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Shruti Gupta <shrutigupta34@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shruti",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "shrutigupta34@gmail.com"),
               person(given = "Coda",
                      family = "Hale"),
               person(given = "Yammer",
                      family = "Inc.",
                      role = c("ctb", "cph")))
as necessary.
Maintainer: ‘Mutua Kilai <kilaimutua@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mutua",
                    family = "Kilai",
                    role = c("aut", "cre"),
                    email = "kilaimutua@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Titus K Rotich <rktitus@uoeld.ac.ke>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Titus", "K"),
                    family = "Rotich",
                    role = c("aut", "cre"),
                    email = "rktitus@uoeld.ac.ke")
as necessary.
Warning in file(open = "w+") :
  cannot open file '/tmp/Rtmpbq8RpO/Rf105dd55c697dae': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
Packages required but not available: 'factoextra', 'FactoMineR', 'ggpubr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'highcharter', 'PTXQC'

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aldo Marchetto <aldo.marchetto@cnr.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aldo",
                    family = "Marchetto",
                    role = c("aut", "cre"),
                    email = "aldo.marchetto@cnr.it")
as necessary.
Running massageExamples to create ‘rkt-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpoqNzxs/file18cdff532fb2a7/print.rkt.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Md Ashad Alam <malam@tulane.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Md", "Ashad"),
                    family = "Alam",
                    role = c("aut", "cre"),
                    email = "malam@tulane.edu")
as necessary.
Maintainer: ‘Luke Winslow <lawinslow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Winslow",
                      role = c("aut", "cre"),
                      email = "lawinslow@gmail.com"),
               person(given = "Jordan",
                      family = "Read",
                      role = "aut"),
               person(given = "Richard",
                      family = "Woolway",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Brentrup",
                      role = "aut"),
               person(given = "Taylor",
                      family = "Leach",
                      role = "aut"),
               person(given = "Jake",
                      family = "Zwart",
                      role = "aut"),
               person(given = "Sam",
                      family = "Albers",
                      role = "aut"),
               person(given = "Doug",
                      family = "Collinge",
                      role = "aut"))
as necessary.
Maintainer: ‘Lionel Henry <lionel@posit.co>’

Reading Rd files failed with message:
  cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX .....Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp24KX0n/file1c48f72dbe091c': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmp24KX0n/file1c48f72dbe091c': No such file or directory
Error in file(con, "r") : cannot open the connection
Encountered the following conversion/validation errors:
cannot open the connection
Maintainer: ‘Patricia Conde-Clemente <patricia.condeclemente@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patricia",
                      family = "Conde-Clemente",
                      role = c("aut", "cre"),
                      email = "patricia.condeclemente@gmail.com"),
               person(given = c("Jose", "M."),
                      family = "Alonso",
                      role = "aut"),
               person(given = "Gracian",
                      family = "Trivino",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wei-Min Wang <wmwang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei-Min",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wmwang@gmail.com")
as necessary.
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Otryakhin and Podolskij (2018) <arXiv:1802.06373>, and also different
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Rlgt.Rcheck/00install.out’ for details.
Maintainer: ‘Jouni Helske <jouni.helske@iki.fi>’

Found the following (possibly) invalid file URI:
  URI: https//cranlogs.r-pkg.org:443/badges/Rlibeemd
    From: README.md
Package required but not available: ‘HDF5Array’

Packages suggested but not available for checking:
  'AnnotationDbi', 'gprofiler2', 'org.Hs.eg.db', 'plotly',
  'reactome.db', 'Seurat'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Piccirilli <michael.r.piccirilli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Piccirilli",
                    role = c("aut", "cre"),
                    email = "michael.r.piccirilli@gmail.com")
as necessary.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Yingsong Hu <yingsonghu@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yingsong",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "yingsonghu@hotmail.com"),
               person(given = "Wayne",
                      family = "Murray",
                      role = "aut"),
               person(given = "Yin",
                      family = "Shan",
                      role = "aut"),
               person(family = "Australia.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sunny Kumar <sunny.nitie14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sunny",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "sunny.nitie14@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tong",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "hetong007@gmail.com"),
               person(given = "Oliver",
                      family = "Keyes",
                      role = "ctb"))
as necessary.

The Description field contains
  in Chinese (http://www.ltp-cloud.com/).
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmapzen.Rcheck/00install.out’ for details.
Fatal error: cannot create 'R_TempDir'
Output from running autoreconf:
  autom4te: error: cannot create autom4te.cache in /tmp/RtmpcnJJ5m/file18c8946cbd76f6: No space left on device
  aclocal: error: /usr/bin/autom4te failed with exit status: 1
  autoreconf: error: aclocal failed with exit status: 1
checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
install log ‘’ does not exist
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmdcev.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘replace_doi.R’
Maintainer: ‘Julien Barnier <julien.barnier@cnrs.fr>’

Reading Rd files failed with message:
  cannot open the connection
Running examples in ‘rmdformats-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pilltabs
> ### Title: Given a cross-table, outputs HTML code to display several views
> ###   of with a tabbed interface
> ### Aliases: pilltabs
> 
> ### ** Examples
> 
> 
> data(airquality)
> tab <- table(airquality$Month, airquality$Ozone > 25)
> pilltabs(tab)
Error: the questionr package is needed for the pilltabs() function to work. Please install it.
Execution halted
Maintainer: ‘Mark Peterson <mark.phillip.peterson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Peterson",
                    role = c("aut", "cre"),
                    email = "mark.phillip.peterson@gmail.com")
as necessary.
Maintainer: ‘Johan Larsson <johanlarsson@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Johann R. Kleinbub <johann.kleinbub@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Johann", "R."),
                      family = "Kleinbub",
                      role = c("aut", "cre"),
                      email = "johann.kleinbub@gmail.com"),
               person(given = "Fabian",
                      family = "Ramseyer",
                      role = "aut"))
as necessary.
Maintainer: ‘Junhewk Kim <junhewk.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhewk",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "junhewk.kim@gmail.com")
as necessary.
Package required but not available: ‘modelr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'simr', 'DHARMa'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmps5wysF/file19a234227df441': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmps5wysF/file19a234227df441': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  <arXiv:2306.03883>). These procedures enable us to verify the overall
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘refund’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpd76Af4/ltx1c486f327e127d/cgarchspec-methods.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Package required but not available: ‘adabag’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ryan M. Hope <rmh3093@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ryan", "M."),
                    family = "Hope",
                    role = c("aut", "cre"),
                    email = "rmh3093@gmail.com")
as necessary.
Running examples in ‘Rmisc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: group.CI
> ### Title: Group Confidence Interval
> ### Aliases: group.CI
> ### Keywords: multivariate
> 
> ### ** Examples
> 
> require(latticeExtra)
Loading required package: latticeExtra
> with(group.CI(weight~feed,chickwts),
+  segplot(feed~weight.lower+weight.upper,center=weight.mean)
+ )
> 
> require(Hmisc)
Loading required package: Hmisc
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘Hmisc’
> with(group.CI(Temp~Month,airquality),
+  xYplot(Cbind(Temp.mean,Temp.lower,Temp.upper)~numericScale(Month),type="b",ylim=c(60,90))
+ )
Error in xYplot(Cbind(Temp.mean, Temp.lower, Temp.upper) ~ numericScale(Month),  : 
  could not find function "xYplot"
Calls: with -> with.default -> eval -> eval
Execution halted
File ‘Rmixmod/libs/Rmixmod.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Object: ‘mixmod.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages required but not available: 'RMixtCompUtilities', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Robert M. Kirkpatrick <rkirkpatrick2@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "M."),
                    family = "Kirkpatrick",
                    role = c("aut", "cre"),
                    email = "rkirkpatrick2@vcu.edu")
as necessary.
Maintainer: ‘Herdiantri Sufriyana <herdi@nycu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rmlnomogram/blob/master/doc/ml_nomogram_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Package required but not available: ‘ggpubr’

Packages suggested but not available for checking: 'tidyverse', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "file"),
                      family = "AUTHORS",
                      role = "aut"),
               person(given = "Jan",
                      family = "Wijffels",
                      role = "cre",
                      email = "jwijffels@bnosac.be"))
as necessary.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: drjphughesjr@gmail.com
    From: inst/doc/Rmodule.pdf
Packages required but not available: 'haven', 'fabR', 'madshapR'

Packages suggested but not available for checking: 'janitor', 'car'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘decrypt.Rd’ ‘encrypt.Rd’ ‘encrypt_raw.Rd’
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘ecr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Henrik A. Friberg <haf@mosek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "MOSEK",
                      family = "ApS",
                      role = "aut"),
               person(given = c("Henrik", "A."),
                      family = "Friberg",
                      role = "cre",
                      email = "haf@mosek.com"))
as necessary.
Found the following calls to attach():
File ‘Rmosek/R/builder.R’:
  attach(builderenv, pos, name, warn.conflicts)
See section ‘Good practice’ in ‘?attach’.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'Hmisc'

Packages suggested but not available for checking: 'cmdstanr', 'mice'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Package required but not available: ‘rms’

Packages suggested but not available for checking:
  'officer', 'flextable', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'plotly', 'mice', 'rmsb'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘brms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kentaro Ueno <ueno_kentaro@kuhp.kyoto-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kentaro",
                    family = "Ueno",
                    role = c("aut", "cre"),
                    email = "ueno_kentaro@kuhp.kyoto-u.ac.jp")
as necessary.
Maintainer: ‘Uwe Menzel <uwemenzel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Uwe",
                    family = "Menzel",
                    role = c("aut", "cre"),
                    email = "uwemenzel@gmail.com")
as necessary.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Iain", "M."),
                      family = "Johnstone",
                      role = "aut"),
               person(given = "Zongming",
                      family = "Ma",
                      role = "aut"),
               person(given = c("Patrick", "O."),
                      family = "Perry",
                      role = "aut"),
               person(given = "Morteza",
                      family = "Shahram",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/evanbiederstedt/RMTstat
which should likely be
  https://github.com/evanbiederstedt/RMTstat/issues
instead.
Maintainer: ‘Chenyu Ren <chenyu.ren@connect.polyu.hk>’

The Description field contains
  Ting Li, Zhongyuan Lyu, Chenyu Ren, Dong Xia (2023) <arXiv:2302.04437>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file() :
  cannot open file '/tmp/RtmpzNVyN2/Rf1989f732e9d94c': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... initialRdMacros -> loadRdMacros -> parse_Rd -> file
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpXxsf0G/file19a0866300986f': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpXxsf0G/file19a0866300986f': No such file or directory
Error in file(con, "r") : cannot open the connection
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpEAlgHz/ltx10c80c5727f475/MVP.GLM.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Sara Viviani <sara.viviani@yahoo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlo",
                      family = "Cafiero",
                      role = "aut"),
               person(given = "Sara",
                      family = "Viviani",
                      role = c("aut", "cre"),
                      email = "sara.viviani@yahoo.it"),
               person(given = "Mark",
                      family = "Nord",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RM.weights-package.Rd’:
    \keyword{ Conditional maximum likelihood, Rasch mo [TRUNCATED]
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'mixtools', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘hot.deck’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'AnnotationHub', 'ensembldb'

Package suggested but not available for checking: ‘recount3’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kam Hamidieh <khamidieh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kam",
                    family = "Hamidieh",
                    role = c("aut", "cre"),
                    email = "khamidieh@gmail.com")
as necessary.
Maintainer: ‘Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jan C. Thiele <rnetlogo@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jan", "C."),
                    family = "Thiele",
                    role = c("aut", "cre"),
                    email = "rnetlogo@gmx.de")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kasper", "Welbers", "&", "Wouter"),
                      family = "van Atteveldt",
                      role = "aut"),
               person(given = "Kasper",
                      family = "Welbers",
                      role = "cre",
                      email = "kasperwelbers@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compare_documents.Rd’ ‘term_char_sim.Rd’ ‘term_union.Rd’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RNeXML.Rcheck/00install.out’ for details.
Maintainer: ‘Ruizhe Chen <rchen18@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hesen",
                      family = "Li",
                      role = "aut"),
               person(given = "Ruizhe",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "rchen18@uic.edu"),
               person(given = "Hai",
                      family = "Nguyen",
                      role = "aut"),
               person(given = "Yu-Che",
                      family = "Chung",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"))
as necessary.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Packages required but not available: 'gemtc', 'ggpubr', 'heatmaply'

Package suggested but not available for checking: ‘netmeta’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ggmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jongbin Jung <me@jongbin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jongbin",
                    family = "Jung",
                    role = c("aut", "cre"),
                    email = "me@jongbin.com")
as necessary.

The Description field contains
  implemented in Jung et al. (2017) <arXiv:1702.04690> based on Rosenbaum
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpJc5aAk/file19ab7852835864/oadoi_fetch.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  package. See Aleman-Gomez et al. (2021) <arXiv:2103.08874> for details
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Gentry",
                      role = "aut",
                      email = "geoffjentry@gmail.com"),
               person(given = c("Duncan", "Temple"),
                      family = "Lang",
                      role = "aut",
                      email = "duncan@r-project.org"),
               person(given = "Pablo",
                      family = "Barbera",
                      role = "cre",
                      email = "pablo.barbera@nyu.edu"))
as necessary.
Package required but not available: ‘pammtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matthias Templ <matthias.templ@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: templ@tuwien.ac.at
    From: inst/doc/imputation.pdf
  URI: matthias.templ@statistik.gv.at
    From: inst/doc/imputation.pdf
  URI: hronk@seznan.cz
    From: inst/doc/imputation.pdf
Packages required but not available: 'fda', 'GGally', 'VIM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul Smirnov <s.paul@mail.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Smirnov",
                    role = c("aut", "cre"),
                    email = "s.paul@mail.ru")
as necessary.
Packages required but not available: 'fda', 'fda.usc', 'goffda'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Joseph Blubaugh <jestonblu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Blubaugh",
                    role = c("aut", "cre"),
                    email = "jestonblu@gmail.com")
as necessary.
Packages required but not available: 'DescTools', 'fdatest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mapedit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Grose <dan.grose@lancaster.ac.uk>’

The Description field contains
  (2014) <arXiv:1204.3358> and Agamennoni et al. (2018)
  of Ruckdeschel et al. (2014) <arXiv:1204.3358>, as well as the
  <arXiv:2007.03238>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'flextable', 'officer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpG5i7Q4/file1b88262e94630e/reg_control.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Running massageExamples to create ‘robmed-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpOqJZX8/file1b98136c99b794/m.R': No space left on device
Execution halted
 NONE
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpbyZ3wQ/ltx1ce03c3fa44534/ci_plot.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Running massageExamples to create ‘robnptests-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning messages:
1: In dir.create(filedir) :
  cannot create dir '/tmp/Rtmp81BuqK/file19ab0222e5f0ae', reason 'No space left on device'
2: In file(out, "wt") :
  cannot open file '/tmp/Rtmp81BuqK/file19ab0222e5f0ae/hl1_test.R': No such file or directory
Execution halted
 NONE
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/robomit.Rcheck/00install.out’ for details.
Package required but not available: ‘labelled’

Packages suggested but not available for checking: 'DiagrammeR', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running massageExamples to create ‘robqda-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpTnSNsx/file19a281769df92d/robqda.cv.R': No space left on device
Execution halted
 NONE
No examples, no tests, no vignettes
Maintainer: ‘Aditya Mishra <amishra@flatironinstitute.org>’

The Description field contains
  <arXiv:1909.04990>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘DescTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘RoBSA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calibrate_quartiles
> ### Title: Calibrate prior distributions based on quartiles
> ### Aliases: calibrate_quartiles
> 
> ### ** Examples
> 
> priors <- calibrate_quartiles(median_t = 5, iq_range_t = 10, prior_sd = 0.5)
Error in loadNamespace(x) : there is no package called ‘flexsurv’
Calls: calibrate_quartiles ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
cannot open the connection
problem found in ‘sn.Rd’
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpBnFuvd/Rf19aaff429bd460': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_package_quietly -> .try_quietly -> file
Execution halted
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RoBTT.Rcheck/00install.out’ for details.
checkRd: (-1) predict.robu.Rd:36-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:43-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:50-55: Lost braces in \itemize; meant \describe ?
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘ivreg’

Package suggested but not available for checking: ‘ivgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘A. Randriamiharisoa <exelami@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alfio",
                      family = "Marazzi",
                      role = "aut",
                      email = "Alfio.Marazzi@unisante.ch"),
               person(given = "Jean-Luc",
                      family = "Muralti",
                      role = "aut"),
               person(given = "A.",
                      family = "Randriamiharisoa",
                      role = "cre",
                      email = "exelami@gmail.com"))
as necessary.
Found the following significant warnings:
  Warning: Obsolescent feature: Old-style character length at (1)
  Warning: Character length of actual argument longer than of dummy argument ‘itext’ (7/6) at (1) [-Wcharacter-truncation]
  Warning: Character length of actual argument longer than of dummy argument ‘itext’ (8/6) at (1) [-Wcharacter-truncation]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RobustAFT.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-16 (Debian 16.1.0-1) 16.1.0’
* used Fortran compiler: ‘GNU Fortran (Debian 16.1.0-1) 16.1.0’
Problems with news in ‘inst/NEWS.Rd’:
  cannot open the connection
Note: skipping ‘lmrob_simulation.Rnw’ due to unavailable dependencies:
  'GGally'
Maintainer: ‘Ray Bai <raybaistat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ray",
                    family = "Bai",
                    role = c("aut", "cre"),
                    email = "raybaistat@gmail.com")
as necessary.

The Description field contains
  (2020) <arXiv:2005.02930> for correcting and quantifying publication
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Felipe Queiroz <ffelipeq@outlook.com>’

Reading Rd files failed with message:
  cannot open the connection
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "Bouveyron", "&", "Stephane"),
                      family = "Girard",
                      role = "aut"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "cre",
                      email = "charles.bouveyron@gmail.com"))
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpCzs1yb/file1b993618a8faea': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpCzs1yb/file1b993618a8faea': No such file or directory
Error in file(con, "r") : cannot open the connection
Maintainer: ‘Chuan Hong <hong.chuan.hannah@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chuan",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "hong.chuan.hannah@gmail.com"),
               person(given = "Yong",
                      family = "Chen",
                      role = "aut"),
               person(given = "Yang",
                      family = "Ning",
                      role = "aut"),
               person(given = "Hao",
                      family = "Wu",
                      role = "aut"))
as necessary.
Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmp6qusD9/file1a711b5b0c581a/robustfa-package.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Santiago I. Hurtado <santih@carina.fcaglp.unlp.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Santiago", "I."),
                    family = "Hurtado",
                    role = c("aut", "cre"),
                    email = "santih@carina.fcaglp.unlp.edu.ar")
as necessary.
Maintainer: ‘Manuel Koller <kollerma@proton.me>’

Reading Rd files failed with message:
  cannot open the connection

Problems when formatting CITATION entries:
  cannot open file '/tmp/RtmpLffbgy/Rf198db079ea580e': No space left on device
Unknown package ‘rlme’ in Rd xrefs
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RobustMediate.Rcheck/00install.out’ for details.
Maintainer: ‘Youyi Fong <youyifong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Youyi",
                    family = "Fong",
                    role = c("aut", "cre"),
                    email = "youyifong@gmail.com")
as necessary.
Maintainer: ‘Maria del Carmen Calatrava Moreno <mc.calatrava.moreno@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "del", "Carmen", "Calatrava"),
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "mc.calatrava.moreno@gmail.com"),
               person(given = "Thomas",
                      family = "Auzinger",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ian M. Johnson <ijca2013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ian", "M."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "ijca2013@gmail.com")
as necessary.
Running examples in ‘robustsur-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: summary.surerob
> ### Title: Summary of surerob estimation
> ### Aliases: summary.surerob print.summary.surerob
> ### Keywords: models
> 
> ### ** Examples
> 
>   library(systemfit)
Error in library(systemfit) : there is no package called ‘systemfit’
Execution halted
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Claudio Agostinelli <claudio.agostinelli@unitn.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudio",
                      family = "Agostinelli",
                      role = c("aut", "cre"),
                      email = "claudio.agostinelli@unitn.it"),
               person(given = c("Victor", "J."),
                      family = "Yohai",
                      role = "aut",
                      email = "victoryohai@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Robyn.Rcheck/00install.out’ for details.
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Maintainer: ‘Ben Sherwood <ben.sherwood@ku.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Sherwood",
                    role = c("aut", "cre"),
                    email = "ben.sherwood@ku.edu")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?attach’.
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpD7T5El/ltx10839d21de25b5/corPs.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Maintainer: ‘Jeffrey R. Webber <jwebber@geo.umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "R."),
                    family = "Webber",
                    role = c("aut", "cre"),
                    email = "jwebber@geo.umass.edu")
as necessary.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'haven', 'justifier'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rsample', 'caret'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rocNIT.Rd’:
    \keyword{Non-inferiority test, receiver operating  [TRUNCATED]
Package required but not available: ‘np’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘forcings_init.Rd’, ‘funs.Rd’, ‘generate.Rd’, ‘getPars.Rd’, ‘getVars.Rd’, ‘initStepper.Rd’, ‘initialize.Rd’, ‘libFunc.Rd’, ‘libName.Rd’, ‘pars.Rd’, ‘plotStoichiometry.Rd’, ‘pros.Rd’, ‘rodeo-class.Rd’
Error(s) in re-building vignettes:
  ...
--- re-building ‘Comparison.Rmd’ using rmarkdown
--- finished re-building ‘Comparison.Rmd’

--- re-building ‘ErrorEuler.Rmd’ using rmarkdown
--- finished re-building ‘ErrorEuler.Rmd’

--- re-building ‘FallingParticle.Rmd’ using rmarkdown
--- finished re-building ‘FallingParticle.Rmd’

--- re-building ‘Kepler.Rmd’ using rmarkdown
--- finished re-building ‘Kepler.Rmd’

--- re-building ‘Muskat-MBal.Rmd’ using rmarkdown
--- finished re-building ‘Muskat-MBal.Rmd’

--- re-building ‘Pendulum.Rmd’ using rmarkdown
--- finished re-building ‘Pendulum.Rmd’

--- re-building ‘Planet.Rmd’ using rmarkdown
--- finished re-building ‘Planet.Rmd’

--- re-building ‘Projectile.Rmd’ using rmarkdown
--- finished re-building ‘Projectile.Rmd’

--- re-building ‘Reaction.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/RtmpbocqH8/Rf1149ec61751851': No space left on device

Quitting from Reaction.Rmd:15-67 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from Reaction.Rmd:15-67 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Reaction.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Reaction.Rmd’

SUMMARY: processing the following file failed:
  ‘Reaction.Rmd’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin Schwendinger <benjaminschwe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Schwendinger",
                    role = c("aut", "cre"),
                    email = "benjaminschwe@gmail.com")
as necessary.
Package required but not available: ‘MiRKAT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rolap.Rcheck/00install.out’ for details.
Package required but not available: ‘broom.mixed’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sparklyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rolog.Rmd’ using rmarkdown

Quitting from rolog.Rmd:16-21 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'DiagrammeR'
---
Backtrace:
    ▆
 1. └─base::library(DiagrammeR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rolog.Rmd' failed with diagnostics:
there is no package called 'DiagrammeR'
--- failed re-building ‘rolog.Rmd’

SUMMARY: processing the following file failed:
  ‘rolog.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Pingping Qu <quping14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pingping",
                      family = "Qu",
                      role = c("aut", "cre"),
                      email = "quping14@gmail.com"),
               person(given = "John",
                      family = "Crowley",
                      role = "aut"))
as necessary.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Horner",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.
Maintainer: ‘Yoann Robin <yoann.robin.k@gmail.com>’

The Description field contains
  generator, see Mezzadri, F. (2007) <arXiv:math-ph/0609050>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ruokun Huang <hruokun.2008@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ruokun",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "hruokun.2008@gmail.com")
as necessary.
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
cannot open the connection
problem found in ‘GetCandIndByIndData.Rd’
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
Fatal error: cannot create 'R_TempDir'
See section ‘Good practice’ in ‘?data’.
Packages required but not available: 'haven', 'rio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
Author field differs from that derived from Authors@R
  Author:    ‘Max Czapanskiy [aut, cre] (0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (<https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (<https://orcid.org/0000-0002-4170-7294>)’
  Authors@R: ‘Max Czapanskiy [aut, cre] (ORCID-ID: 0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (ORCID: <https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (ORCID: <https://orcid.org/0000-0002-4170-7294>)’
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rosario.Rcheck/00install.out’ for details.
Maintainer: ‘Nicola Lunardon <nicola.lunardon@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Lunardon",
                      role = c("aut", "cre"),
                      email = "nicola.lunardon@unimib.it"),
               person(given = "Giovanna",
                      family = "Menardi",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'caret', 'keras'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Fatal error: cannot create 'R_TempDir'
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Michel Ballings <michel.ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
cannot open the connection
problem found in ‘Maxwell.Rd’
Running examples in ‘rotations-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Q4
> ### Title: 'Q4' class for storing rotation data as quaternions
> ### Aliases: Q4 as.Q4 as.Q4.default as.Q4.SO3 as.Q4.Q4 as.Q4.data.frame
> ###   is.Q4 id.Q4
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # Pull off subject 1's wrist measurements
> Subj1Wrist <- subset(drill, Subject == '1' & Joint == 'Wrist')
> 
>                                ## The measurements are in columns 5:8
> all(is.Q4(Subj1Wrist[,5:8]))   #TRUE, even though Qs is a data.frame, the rows satisfy the
[1] TRUE
>                                #conditions necessary to be quaternions BUT,
>                                #S3 methods (e.g. 'mean' or 'plot') for objects of class
>                                #'Q4' will not work until 'as.Q4' is used
> 
> Qs <- as.Q4(Subj1Wrist[,5:8])  #Coerce measurements into 'Q4' type using as.Q4.data.frame
> all(is.Q4(Qs))                 #TRUE
Error in x[i, ...] : subscript out of bounds
Calls: is.Q4 -> apply -> [ -> [.Q4
Execution halted
Running ‘test-all.R’ [2s/2s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check("rotations")
  Loading required package: rotations
  Saving _problems/test_conversions-10.R
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 51 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_conversions.R:10:1'): (code run outside of `test_that()`) ────
  Expected `is.Q4(as.Q4(u, r))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 51 ]
  Error:
  ! Test failures.
  Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX .Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpo8PBS6/ltx1c609c4f9af36c/cayley.kappa.tex': No space left on device
Error in file(out, "wt") : cannot open the connection
Warning in file(open = "w+") :
  cannot open file '/tmp/RtmpQMOXnU/Rf1b5217465936cb': No space left on device
Error in file(open = "w+") : cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly -> file
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Fatal error: cannot create 'R_TempDir'
Error(s) in re-building vignettes:
  ...
--- re-building ‘rounding-in-depth.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmptp1hQb/Rf1b93d07a18fd7b': No space left on device

Quitting from rounding-in-depth.Rmd:235-237 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from rounding-in-depth.Rmd:235-237 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rounding-in-depth.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘rounding-in-depth.Rmd’

--- re-building ‘rounding-options.Rmd’ using rmarkdown
--- finished re-building ‘rounding-options.Rmd’

--- re-building ‘scrutiny.Rmd’ using rmarkdown
--- finished re-building ‘scrutiny.Rmd’

SUMMARY: processing the following file failed:
  ‘rounding-in-depth.Rmd’

Error: Vignette re-building failed.
Execution halted
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in file(out, "wt") :
  cannot open file '/tmp/Rtmpr1JizS/file1b89b137546ef3': No space left on device
Warning in file(con, "r") :
  cannot open file '/tmp/Rtmpr1JizS/file1b89b137546ef3': No such file or directory
Error in file(con, "r") : cannot open the connection
Loading this package had a fatal error status code 2
Loading log:
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘ggpubr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Adam Spannbauer <spannbaueradam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Spannbauer",
                    role = c("aut", "cre"),
                    email = "spannbaueradam@gmail.com")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘translate_mutate.Rd’, ‘translate_select.Rd’, ‘translate_sort.Rd’, ‘translate_summarize.Rd’
Error(s) in re-building vignettes:
  ...
Fatal error: cannot create 'R_TempDir'
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephan",
                    family = "Dlugosz",
                    role = c("aut", "cre"),
                    email = "stephan.dlugosz@googlemail.com")
as necessary.
Maintainer: ‘Giuliano Galimberti <giuliano.galimberti@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Galimberti",
                      role = c("aut", "cre"),
                      email = "giuliano.galimberti@unibo.it"),
               person(given = "Gabriele",
                      family = "Soffritti",
                      role = "aut"),
               person(given = c("Matteo", "Di"),
                      family = "Maso",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘FactoMineR’

Packages suggested but not available for checking:
  'EvaluateCore', 'factoextra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy I. Cannings <timothy.cannings@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "I."),
                      family = "Cannings",
                      role = c("aut", "cre"),
                      email = "timothy.cannings@ed.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RPesto.Rcheck/00install.out’ for details.
Running massageExamples to create ‘rpf-Ex.R’ failed
Error in file(out, "wt") : cannot open the connection
Calls: <Anonymous> -> Rd2ex -> file
In addition: Warning message:
In file(out, "wt") :
  cannot open file '/tmp/RtmpvWvNfM/file1c46851bcfe63a/LSAT6.R': No space left on device
Execution halted
 NONE
Encountered the following conversion/validation errors:
cannot open the connection
Package required but not available: ‘doBy’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Colin FAY <contact@colinfay.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Colin",
                    family = "FAY",
                    role = c("aut", "cre"),
                    email = "contact@colinfay.me")
as necessary.
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Peter Filzmoser <peter.filzmoser@tuwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Filzmoser",
                      role = c("aut", "cre"),
                      email = "peter.filzmoser@tuwien.ac.at"),
               person(given = "Sukru",
                      family = "Acitas",
                      role = "aut"),
               person(given = "Birdal",
                      family = "Senoglu",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Plattner",
                      role = "aut"))
as necessary.
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Devin", "C."),
                      family = "Koestler",
                      role = "aut"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
checkRd: (-1) plotImage.blcTree.Rd:17: Lost braces
    17 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
checkRd: (-1) plotImage.glcTree.Rd:16: Lost braces
    16 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
Fatal error: cannot create 'R_TempDir'
Maintainer: ‘Sascha Herrmann <sascha.herrmann.consulting@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sascha",
                    family = "Herrmann",
                    role = c("aut", "cre"),
                    email = "sascha.herrmann.consulting@gmail.com")
as necessary.
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = c("aut", "cre"),
                      email = "lafaye@unsw.edu.au"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"),
               person(given = "Jeremie",
                      family = "Riou",
                      role = "aut"))
as necessary.
Maintainer: ‘Torsten Schoeps <torsten.schoeps@bioinf.med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Heiko", "Mannsperger", "with", "contributions", "of", "Stephan"),
                      family = "Gade",
                      role = "aut"),
               person(given = "Torsten",
                      family = "Schoeps",
                      role = "cre",
                      email = "torsten.schoeps@bioinf.med.uni-goettingen.de"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tomas Boril <borilt@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘dbplyr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Packages required but not available: 'mixtools', 'oeli'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
Maintainer: ‘Miguel Conde <miguelco2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miguel",
                    family = "Conde",
                    role = c("aut", "cre"),
                    email = "miguelco2000@gmail.com")
as necessary.
checkRd: (-1) check_node.Rd:11: Lost braces
    11 | \item{x}{\\code{list}, the node to check}
       |                ^
Warning in dir.create(filedir) :
  cannot create dir '/tmp/RtmpRLqNXe/file1bc3c8442ad983', reason 'No space left on device'
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpRLqNXe/file1bc3c8442ad983/rpt.R': No such file or directory
Error in file(out, "wt") : cannot open the connection
Execution halted
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘MAD.Rd’, ‘RE.Rd’, ‘Shamos.Rd’
Warning in file(out, "wt") :
  cannot open file '/tmp/RtmpZvoyjP/file108cea750c1749/acc.R': No space left on device
Error in file(out, "wt") : cannot open the connection
Execution halted
Packages required but not available: 'tidyverse', 'Hmisc', 'GGally'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mice’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
  ...
--- re-building ‘rqualify-cran.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmpp8wKvf/Rf1c40a71c9e1f76': No space left on device

Quitting from rqualify-cran.Rmd:147-149 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cannot open the connection
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


Quitting from rqualify-cran.Rmd:147-149 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
file("", "w+b")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rqualify-cran.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘rqualify-cran.Rmd’

SUMMARY: processing the following file failed:
  ‘rqualify-cran.Rmd’

Error: Vignette re-building failed.
Execution halted