Error(s) in re-building vignettes:
  ...
--- re-building ‘ivolcano.qmd’ using html
[31m

processing file: ivolcano.qmd
[39m[31mError in `curl::curl_fetch_memory()`:
! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
Resolving timed out after 10002 milliseconds
Backtrace:
     ▆
  1. ├─fanyi::gene_summary(top_eg)
  2. │ └─fanyi:::gene_summary_ncbi(entrez)
  3. │   └─fanyi:::.get_entrez_summary(newitem)
  4. │     └─rentrez::entrez_summary(db = "gene", id = entrez)
  5. │       ├─base::do.call(make_entrez_query, args)
  6. │       └─rentrez (local) `<fn>`(...)
  7. │         └─httr::GET(uri, query = args, config = config)
  8. │           └─httr:::request_perform(req, hu$handle$handle)
  9. │             ├─httr:::request_fetch(req$output, req$url, handle)
 10. │             └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 11. │               └─curl::curl_fetch_memory(url, handle = handle)
 12. └─curl:::raise_libcurl_error(...)
[39m[31m
Quitting from ivolcano.qmd:105-125 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
Resolving timed out after 10002 milliseconds
---
Backtrace:
     ▆
  1. ├─fanyi::gene_summary(top_eg)
  2. │ └─fanyi:::gene_summary_ncbi(entrez)
  3. │   └─fanyi:::.get_entrez_summary(newitem)
  4. │     └─rentrez::entrez_summary(db = "gene", id = entrez)
  5. │       ├─base::do.call(make_entrez_query, args)
  6. │       └─rentrez (local) `<fn>`(...)
  7. │         └─httr::GET(uri, query = args, config = config)
  8. │           └─httr:::request_perform(req, hu$handle$handle)
  9. │             ├─httr:::request_fetch(req$output, req$url, handle)
 10. │             └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 11. │               └─curl::curl_fetch_memory(url, handle = handle)
 12. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Execution halted
[39m[33mWARN: Error encountered when rendering files[39m
Error: processing vignette 'ivolcano.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
  -----------------------------
  
  
  processing file: ivolcano.qmd
  [31mError in `curl::curl_fetch_memory()`:[39m
  ! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
  Resolving timed out after 10002 milliseconds
  Backtrace:
  ▆
  1. ├─fanyi::gene_summary(top_eg)
  2. │ └─fanyi:::gene_summary_ncbi(entrez)
  3. │ └─fanyi:::.get_entrez_summary(newitem)
  4. │ └─rentrez::entrez_summary(db = "gene", id = entrez)
  5. │ ├─base::do.call(make_entrez_query, args)
  6. │ └─rentrez (local) `<fn>`(...)
  7. │ └─httr::GET(uri, query = args, config = config)
  8. │ └─httr:::request_perform(req, hu$handle$handle)
  9. │ ├─httr:::request_fetch(req$output, req$url, handle)
  10. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
  11. │ └─curl::curl_fetch_memory(url, handle = handle)
  12. └─curl:::raise_libcurl_error(...)
  
  Quitting from ivolcano.qmd:105-125 [unnamed-chunk-5]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error in `curl::curl_fetch_memory()`:
  ! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
  Resolving timed out after 10002 milliseconds
  ---
  Backtrace:
  ▆
  1. ├─fanyi::gene_summary(top_eg)
  2. │ └─fanyi:::gene_summary_ncbi(entrez)
  3. │ └─fanyi:::.get_entrez_summary(newitem)
  4. │ └─rentrez::entrez_summary(db = "gene", id = entrez)
  5. │ ├─base::do.call(make_entrez_query, args)
  6. │ └─rentrez (local) `<fn>`(...)
  7. │ └─httr::GET(uri, query = args, config = config)
  8. │ └─httr:::request_perform(req, hu$handle$handle)
  9. │ ├─httr:::request_fetch(req$output, req$url, handle)
  10. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
  11. │ └─curl::curl_fetch_memory(url, handle = handle)
  12. └─curl:::raise_libcurl_error(...)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Execution halted
  [33mWARN: Error encountered when rendering files[39m
  
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘ivolcano.qmd’

SUMMARY: processing the following file failed:
  ‘ivolcano.qmd’

Error: Vignette re-building failed.
Execution halted