Running ‘testthat.R’ [23s/82s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(EcoCleanR)
  > 
  > test_check("EcoCleanR")
  Querying WoRMS for 'Mexacanthina lugubris'...
  [NOT FOUND]'Mexacanthina lugubris' not found in WoRMS.
  Saving _problems/test-data_cleaning-101.R
  Saving _problems/test-data_cleaning-103.R
  Saving _problems/test-data_cleaning-105.R
  Saving _problems/test-data_cleaning-107.R
  Suggested threshold at 96th percentile: 8801832
  Imputation iteration 1
  Imputation iteration 2
  No more missing values to impute.
  [ FAIL 4 | WARN 0 | SKIP 7 | PASS 25 ]
  
  ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
  • Skipping ec_extract_env_layers test - big shape files required to load for it
    (1): 'test-data_cleaning.R:206:3'
  • Skipping ec_flag_non_east_atlantic test - big shape files required to load
    for it (1): 'test-data_cleaning.R:462:3'
  • Skipping ec_flag_non_region test - big shape files required to load for it
    (3): 'test-data_cleaning.R:191:3', 'test-data_cleaning.R:324:3',
    'test-data_cleaning.R:366:3'
  • Skipping ec_flag_non_west_atlantic test - big shape files required to load
    for it (1): 'test-data_cleaning.R:484:3'
  • Skipping ec_flag_non_west_pacific test - big shape files required to load for
    it (1): 'test-data_cleaning.R:506:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-data_cleaning.R:101:3'): ec_worms_synonym works ──────────────
  Expected `result` to be an S3 object.
  Actual OO type: none.
  ── Failure ('test-data_cleaning.R:103:3'): ec_worms_synonym works ──────────────
  Expected `all(c("Accepted_syn_worms", "ecodata_syn_with_count") %in% colnames(result))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test-data_cleaning.R:105:3'): ec_worms_synonym works ──────────────
  Expected `"Mexacanthina lugubris" %in% result$Accepted_syn_worms` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test-data_cleaning.R:107:3'): ec_worms_synonym works ──────────────
  Expected `any(grepl("Mexacanthina lugubris \\([0-9]+\\)", result$ecodata_syn_with_count))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 4 | WARN 0 | SKIP 7 | PASS 25 ]
  Error:
  ! Test failures.
  Execution halted