Running ‘testthat.R’ [5m/13m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(patrick)
  > library(climatehealth)
  > 
  > test_check("climatehealth")
  This is dlnm 2.4.10. For details: help(dlnm) and vignette('dlnmOverview').
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  
   *** inla.core.safe:  The inla program failed, but will rerun in case better initial values may help. try=1/1 
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  Saving _problems/test_diarrhea-121.R
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  
   *** inla.core.safe:  The inla program failed, but will rerun in case better initial values may help. try=1/1 
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  Saving _problems/test_malaria-142.R
  
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  [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • On CRAN (2): 'test_wildfire.R:1943:3', 'test_wildfire.R:2020:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_diarrhea.R:83:3'): diarrhea_do_analysis runs end-to-end on synthetic data ──
  Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode,      control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode,      safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned
  The inla program failed and the maximum number of tries has been reached.
  Backtrace:
       ▆
    1. ├─climatehealth:::suppress_plot(...) at test_diarrhea.R:83:3
    2. │ └─base::force(expr) at ./helper-utils.R:11:3
    3. ├─base::suppressWarnings(...)
    4. │ └─base::withCallingHandlers(...)
    5. └─climatehealth::diarrhea_do_analysis(...)
    6.   └─climatehealth:::run_inla_models(...)
    7.     └─climatehealth (local) fit(base_formula)
    8.       ├─INLA::inla.rerun(...)
    9.       │ └─base::stopifnot(any(inherits(object, "inla")))
   10.       └─INLA::inla(...)
   11.         └─INLA:::inla.core.safe(...)
  ── Error ('test_malaria.R:104:3'): malaria_do_analysis runs end-to-end on synthetic data ──
  Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode,      control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode,      safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned
  The inla program failed and the maximum number of tries has been reached.
  Backtrace:
       ▆
    1. ├─climatehealth:::suppress_plot(...) at test_malaria.R:104:3
    2. │ └─base::force(expr) at ./helper-utils.R:11:3
    3. ├─base::suppressWarnings(...)
    4. │ └─base::withCallingHandlers(...)
    5. └─climatehealth::malaria_do_analysis(...)
    6.   └─climatehealth:::run_inla_models(...)
    7.     └─climatehealth (local) fit(base_formula)
    8.       ├─INLA::inla.rerun(...)
    9.       │ └─base::stopifnot(any(inherits(object, "inla")))
   10.       └─INLA::inla(...)
   11.         └─INLA:::inla.core.safe(...)
  
  [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]
  Error:
  ! Test failures.
  Execution halted