Running ‘run-all.R’ [24s/48s]
  Running ‘testthat.R’ [23s/42s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  > 
  > test_check("ProjectTemplate")
  Loading required package: ProjectTemplate
  Loading required package: digest
  Loading required package: tibble
  Project name: test_project1f099861c288e9
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09984ff72aa8
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09987c948949
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project1f09987c948949
  version                     0.11.1
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project1f09987c948949
  version                     0.11.1
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f0998112e6aef
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: cache.RData
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project1f099873803c7b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project1f099873803c7b
  Clearing cache for project: test_project1f09981832d835
  Objects to clear from memory: xxx
  Project name: test_project1f09981832d835
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project1f09986c5467da
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09986c5467da
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project1f09981498b675
  Project name: test_project1f099819cfe6ed
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f0998724d0659
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project1f09988a552b5 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project1f09988a552b5 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project21f09981f479903 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file1f099875f0434c helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project1f099871083b00 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project1f099871083b00 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project1f099871083b00 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project1f099871083b00 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project1f099871083b00 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project1f099871083b00 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project1f099871083b00 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project1f09982678188
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project1f09981e76591b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project1f09987ff36a3b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09987ff36a3b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09984319ec39
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09984319ec39
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09982a146511
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09982a146511
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09981c577a42
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f099858ee099b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f099858ee099b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09982ba83cba
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09982ba83cba
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09981afe1dd0
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09981afe1dd0
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09987175765c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09987175765c
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f09982cd37372
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f09982cd37372
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: config helper.function project.info
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project1f09981c7a51ad
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project1f0998786d365a
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f0998401428e3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f099833ee4717
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-load.R:473:3'): pass munge files to run ────────────────────────
  <Rcpp::exception/C++Error/error/condition>
  Error: /home/hornik/tmp/scratch/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so - /home/hornik/tmp/scratch/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so: cannot enable executable stack as shared object requires: Invalid argument
  Backtrace:
       ▆
    1. ├─base::suppressMessages(load.project()) at test-load.R:473:3
    2. │ └─base::withCallingHandlers(...)
    3. └─ProjectTemplate::load.project()
    4.   └─ProjectTemplate:::.munge.data(config, my.project.info)
    5.     └─reticulate::source_python(file.path(dir_name, preprocessing.script))
    6.       └─reticulate::py_run_file(file, local = FALSE, convert = convert)
    7.         └─reticulate:::ensure_python_initialized()
    8.           └─reticulate:::initialize_python()
    9.             └─base::tryCatch(...)
   10.               └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   11.                 └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   12.                   └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
  Error:
  ! Test failures.
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ProjectTemplate)
  Loading required package: digest
  Loading required package: tibble
  > 
  > test_check("ProjectTemplate")
  Project name: test_project1f5d0e35411afa
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e2f82b2be
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e6f3b5d3a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project1f5d0e6f3b5d3a
  version                     0.11.1
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project1f5d0e6f3b5d3a
  version                     0.11.1
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e1a431a10
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: cache.RData
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project1f5d0e22f9a9b0
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project1f5d0e22f9a9b0
  Clearing cache for project: test_project1f5d0e4834484f
  Objects to clear from memory: xxx
  Project name: test_project1f5d0e4834484f
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project1f5d0e2098b926
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e2098b926
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project1f5d0e61e6dbef
  Project name: test_project1f5d0e56fd77e2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e4a9aa623
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project1f5d0e3f7fbeec is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project1f5d0e3f7fbeec is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project21f5d0e391e41f5 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file1f5d0e68413f56 helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project1f5d0e73309cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project1f5d0e73309cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project1f5d0e73309cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project1f5d0e73309cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project1f5d0e73309cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project1f5d0e73309cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project1f5d0e73309cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project1f5d0ec92bcbc
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.1 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project1f5d0e38314474
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project1f5d0e42ad30b3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e42ad30b3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e7bd95435
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e7bd95435
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e4392b44d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e4392b44d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e73d6dbe6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0eaaef526
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0eaaef526
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e584774b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e584774b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e7dd7831c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e7dd7831c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e3cc6c5b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e3cc6c5b
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1f5d0e2382e140
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e2382e140
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: config helper.function project.info
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project1f5d0e580b2102
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project1f5d0e149380dd
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e193852e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1f5d0e7269e032
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-load.R:473:3'): pass munge files to run ────────────────────────
  <Rcpp::exception/C++Error/error/condition>
  Error: /home/hornik/tmp/scratch/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so - /home/hornik/tmp/scratch/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so: cannot enable executable stack as shared object requires: Invalid argument
  Backtrace:
       ▆
    1. ├─base::suppressMessages(load.project()) at test-load.R:473:3
    2. │ └─base::withCallingHandlers(...)
    3. └─ProjectTemplate::load.project()
    4.   └─ProjectTemplate:::.munge.data(config, my.project.info)
    5.     └─reticulate::source_python(file.path(dir_name, preprocessing.script))
    6.       └─reticulate::py_run_file(file, local = FALSE, convert = convert)
    7.         └─reticulate:::ensure_python_initialized()
    8.           └─reticulate:::initialize_python()
    9.             └─base::tryCatch(...)
   10.               └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   11.                 └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   12.                   └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
  Error:
  ! Test failures.
  Execution halted