Running ‘testthat.R’ [23s/161s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(pkgdiff)
  > 
  > test_check("pkgdiff")
  # A difference object: logr package
  - Comparing: v1.3.6/v1.3.7
  - Breaking Changes: FALSE
  - Added Functions: 
    - get_warnings()
    - log_error()
    - log_resume()
    - log_suspend()
  - Added Parameters: 
    - log_close(): footer
    - log_open(): header
  # A difference object: admiral package
  - Comparing: v0.12.3/v1.0.0
  - Breaking Changes: TRUE
  - Added Functions: 
    - derive_var_merged_ef_msrc()
    - derive_vars_computed()
    - derive_vars_extreme_event()
    - flag_event()
  - Added Parameters: 
    - consolidate_metadata(): check_type
    - derive_extreme_event(): tmp_event_nr_var
    - derive_param_exposure(): dataset_add, filter_add
    - derive_summary_records(): dataset_add, dataset_ref, filter_add, missing_values
    - derive_var_anrind(): signif_dig
    - derive_var_extreme_flag(): true_value, false_value
    - derive_var_joined_exist_flag(): dataset_add, first_cond_lower, first_cond_upper, filter_add, filter_join
    - derive_var_merged_summary(): new_vars, missing_values
    - derive_vars_joined(): tmp_obs_nr_var, join_type, first_cond_lower, first_cond_upper, exist_flag, true_value, false_value
    - derive_vars_merged(): exist_flag, true_value, false_value
    - event_joined(): first_cond_lower, first_cond_upper
    - filter_joined(): dataset_add, first_cond_lower, first_cond_upper, filter_add, filter_join
    - set_admiral_options(): signif_digits
  - Removed Functions: 
    - assert_terms()
    - assert_valid_queries()
    - derive_param_extreme_event()
    - derive_var_basetype()
    - derive_var_confirmation_flag()
    - derive_var_last_dose_amt()
    - derive_var_last_dose_date()
    - derive_var_last_dose_grp()
    - derive_var_merged_cat()
    - derive_var_merged_character()
    - derive_vars_last_dose()
    - extend_source_datasets()
    - filter_date_sources()
    - validate_basket_select()
    - validate_query()
  - Removed Parameters: 
    - derive_extreme_records(): filter
    - derive_param_exist_flag(): aval_fun, dataset_adsl, subject_keys
  Package data for 'logxx' not found.
  Package data for 'logxx' not found.
  Archive versions of 'logxx' not available.
  # A difference object: fmtr package
  - Comparing: v1.5.7/v1.5.8
  - Breaking Changes: TRUE
  - Added Functions: 
    - fapply2()
  - Added Parameters: 
    - fmt_cnt_pct(): na, zero
  - Removed Functions: 
    - labels.data.frame()
    - labels<-()
  # A difference object: fmtr package
  - Comparing: v1.5.7/v1.5.8
  - Breaking Changes: TRUE
  - Added Functions: 1
  - Added Parameters: 1
  - Removed Functions: 
    - labels.data.frame()
    - labels<-()
  # A difference object: fmtr package
  - Comparing: v1.5.5/v1.5.7
  - Breaking Changes: FALSE
  # A difference object: fmtr package
  - Comparing: v1.5.5/v1.5.7
  - Breaking Changes: FALSE
  Loading required package: proto
  Loading required package: grid
  Loading required package: reshape
  # A package info object: Matrix package
  - Version: v1.7-4
  - Release Date: 2026-03-21
  - Title: Sparse and Dense Matrix Classes and Methods
  - Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
  - License: GPL (>= 2) | file LICENCE
  - Description: A rich hierarchy of sparse and dense matrix classes,
  	including general, symmetric, triangular, and diagonal matrices
  	with numeric, logical, or pattern entries.  Efficient methods for
  	operating on such matrices, often wrapping the 'BLAS', 'LAPACK',
  	and 'SuiteSparse' libraries.
  - Downloads/Month: 107951
  - Cached: FALSE
  - Base Package: TRUE
  Package R.oo version 1.4.2 has no namespace file.
  # A package info object: R.oo package
  - Version: v1.4.2
  - Release Date: 
  - Title: R object-oriented programming with or without references
  - Maintainer: Henrik Bengtsson <henrikb@braju.com>
  - License: LGPL (>= 2.1)
  - Description: Methods and classes for object-oriented programming in R with or without references.  Large effort has been made on making definition of methods as simple as possible with a minimum of maintainance for package developers.  The package has been developed since 2001 and is now considered very stable.  This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
  - Depends: R (>= 2.2.0), R.methodsS3, utils
  - Imports: methods
  - Suggests: tools
  - Downloads/Month: 212248
  - Repository: 
  - Cached: TRUE
  - Functions: 
    - .First.lib(): libname, pkgname
  Package xtable version 1.0-1 has no namespace file.
  # A package info object: xtable package
  - Version: v1.0-1
  - Release Date: 
  - Title: Export tables
  - License: GPL version 2 or later
  - Description: Coerce data to LaTeX and HTML tables
  - Depends: 
  - Downloads/Month: 528687
  - Cached: TRUE
  - Functions: 
    - caption(): x, ...
    - caption.xtable(): x
    - label(): x, ...
    - label.xtable(): x
    - align(): x, ...
    - align.xtable(): x
    - digits(): x, ...
    - digits.xtable(): x
    - display(): x, ...
    - display.xtable(): x
    - xtable(): x, ...
    - xtable.data.frame(): x, caption, label, align, digits, display
    - xtable.matrix(): x, caption, label, align, digits, display
    - xtable.anova(): x, caption, label, align, digits, display
    - xtable.aov(): x, caption, label, align, digits, display, ...
    - xtable.summary.aov(): x, caption, label, align, digits, display
    - xtable.aovlist(): x, caption, label, align, digits, display
    - xtable.summary.aovlist(): x, caption, label, align, digits, display
    - xtable.lm(): x, caption, label, align, digits, display
    - xtable.summary.lm(): x, caption, label, align, digits, display
    - xtable.glm(): x, caption, label, align, digits, display
    - xtable.summary.glm(): x, caption, label, align, digits, display
    - xtable.prcomp(): x, caption, label, align, digits, display
    - xtable.summary.prcomp(): x, caption, label, align, digits, display
    - xtable.princomp(): x, caption, label, align, digits, display
  # A package info object: gtools package
  - Version: v2.0.7
  - Release Date: 
  - Title: Various functions to help manipulate data.
  - Maintainer: Nitin Jain <nitin.jain@pfizer.com>
  - License: GPL (version 2 or later)
  - Description: Various functions to help manipulate data
  - Depends: R (>= 1.9.0)
  - Downloads/Month: 200795
  - Cached: TRUE
  - Functions: 
    - combinations(): n, r, v, set, repeats.allowed
    - ddirichlet(): x, alpha
    - even(): x
    - foldchange(): num, denom
    - foldchange2logratio(): foldchange, base
    - inv.logit(): x, min, max
    - invalid(): x
    - logit(): x, min, max
    - logratio2foldchange(): logratio, base
    - mixedorder()
    - mixedsort()
    - odd(): x
    - permutations(): n, r, v, set, repeats.allowed
    - permute(): x
    - quantcut(): x, q, na.rm, ...
    - rdirichlet(): n, alpha
    - running()
    - scat(): ...
  # A package info object: logr package
  - Version: v1.3.9
  - Release Date: 2025-03-26
  - Title: Creates Log Files
  - Maintainer: David Bosak <dbosak01@gmail.com>
  - License: CC0
  - Description: Contains functions to help create log files.  The
  package aims to overcome the difficulty of the base R sink() command.  The
  log_print() function will print to both the console and the file log,
  without interfering in other write operations.
  - Depends: R (>= 3.4.0), common (>= 1.1.3)
  - Imports: withr, utils
  - Suggests: knitr, rmarkdown, testthat, tidylog, dplyr, covr
  - Downloads/Month: 3571
  - Repository: CRAN
  - Cached: TRUE
  - Functions: 15
  # A package info object: logr package
  - Version: v1.3.9
  - Release Date: 2025-03-26
  - Title: Creates Log Files
  - Maintainer: David Bosak <dbosak01@gmail.com>
  - License: CC0
  - Description: Contains functions to help create log files.  The
  package aims to overcome the difficulty of the base R sink() command.  The
  log_print() function will print to both the console and the file log,
  without interfering in other write operations.
  - Depends: R (>= 3.4.0), common (>= 1.1.3)
  - Imports: withr, utils
  - Suggests: knitr, rmarkdown, testthat, tidylog, dplyr, covr
  - Downloads/Month: 3571
  - Repository: CRAN
  - Cached: TRUE
  - Functions: 
    - get_warnings()
    - log_close(): footer
    - log_code()
    - log_error(): msg
    - log_hook(): x
    - log_info(): msg, console, blank_after, hide_notes
    - log_open(): file_name, logdir, show_notes, autolog, compact, traceback, header, stdout, line_size
    - log_path()
    - log_print(): x, ..., console, blank_after, msg, hide_notes
    - log_resume(): file_name
    - log_status()
    - log_suspend()
    - log_warning(): msg
    - put(): x, ..., console, blank_after, msg, hide_notes
    - sep(): x, console
  Package data for 'maptools' has been archived.
  Getting stability score for package 'tcltk'...
  Package 'tcltk' is a Base package.
  Getting stability score for package 'Matrix'...
  Package 'Matrix' is a Base package.
  Comparing common v1.1.3/v1.1.5
  Comparing knitr v1.39/v1.51
  Comparing rvest v0.3.6/v1.0.5
  Getting stability score for package 'common'...
  Getting stability score for package 'fmtr'...
  Getting stability score for package 'libr'...
  Getting stability score for package 'defineR'...
  Package data for 'definer' not found.
  Archive versions of 'definer' not available.
  Comparing procs 1.0.7/1.0.8
  Comparing procs 1.0.6/1.0.7
  Comparing procs 1.0.5/1.0.6
  Comparing procs 1.0.4/1.0.5
  Comparing procs 1.0.3/1.0.4
  Package data for 'forker' not found.
  Archive versions of 'forker' not available.
  Package 'tcltk' is a Base package.
  Package 'Matrix' is a Base package.
  Saving _problems/test-summary-57.R
  No version info available for 'bork'.
  Package 'tools' is a Base package.
  Package data for 'grid' has been archived.
  Package data for 'purr' not found.
  Package data for 'forker' not found.
  Archive versions of 'forker' not available.
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 268 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-summary.R:57:3'): summary3: pkg_summary() basic functionality. ──
  Error in `load(gzcon(murl))`: cannot open the connection to 'https://github.com/dbosak01/pkgdiffdata/raw/refs/heads/main/data/stringr.RData'
  Backtrace:
      ▆
   1. └─pkgdiff::pkg_summary("stringr") at test-summary.R:57:3
   2.   └─pkgdiff:::gen_html(pkg, fpth, ipth, releases, months)
   3.     └─pkgdiff::pkg_stability(pkg, releases = rlses, months = mths)
   4.       └─pkgdiff:::get_github_data(pkg, releases, months)
   5.         ├─base::get(load(gzcon(murl)))
   6.         └─base::load(gzcon(murl))
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 268 ]
  Error:
  ! Test failures.
  Execution halted