prepare_Rd: ./man/GVME.Rd:21: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME.Rd:24: unknown macro '\bibcitet'
checkRd: (-1) GVME.Rd:21: Lost braces
    21 |   See \bibcitet{|Gordon+Vichi:2001|page 230}, for more details.
       |                ^
checkRd: (-1) GVME.Rd:24: Lost braces
    24 |   Table 1 in \bibcitet{Gordon+Vichi:2001}.
       |                       ^
prepare_Rd: ./man/GVME_Consensus.Rd:6: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:15: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:20: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:21: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:25: unknown macro '\bibcitet'
checkRd: (-1) GVME_Consensus.Rd:6: Lost braces
     6 |   partition data given in \bibcitet{Gordon+Vichi:2001}.
       |                                    ^
checkRd: (-1) GVME_Consensus.Rd:15: Lost braces
    15 |   macroeconomic partition data in \bibcitet{Gordon+Vichi:2001}, which are
       |                                            ^
checkRd: (-1) GVME_Consensus.Rd:20: Lost braces
    20 |   in \bibcitet{Gordon+Vichi:2001} and the approach in
       |               ^
checkRd: (-1) GVME_Consensus.Rd:21: Lost braces
    21 |   \bibcitet{Sato+Sato:1994},
       |            ^
checkRd: (-1) GVME_Consensus.Rd:25: Lost braces
    25 |   Tables 4 and 5 in \bibcitet{Gordon+Vichi:2001}.
       |                              ^
prepare_Rd: ./man/Kinship82.Rd:14: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82.Rd:18: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82.Rd:23: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82.Rd:29: unknown macro '\bibcitet'
checkRd: (-1) Kinship82.Rd:14: Lost braces
    14 |   \bibcitet{Rosenberg+Kim:1975} describe an experiment where perceived
       |            ^
checkRd: (-1) Kinship82.Rd:18: Lost braces
    18 |   \bibcitet{Arabie+Carroll+DeSarbo:1987}, and are also contained in file
       |            ^
checkRd: (-1) Kinship82.Rd:23: Lost braces
    23 |   \bibcitet{Rosenberg:1982}.
       |            ^
checkRd: (-1) Kinship82.Rd:29: Lost braces
    29 |   Table 7.1 in \bibcitet{Rosenberg:1982}, with the \dQuote{nephew} and 
       |                         ^
prepare_Rd: ./man/Kinship82_Consensus.Rd:6: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82_Consensus.Rd:16: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82_Consensus.Rd:17: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82_Consensus.Rd:21: unknown macro '\bibcitet'
checkRd: (-1) Kinship82_Consensus.Rd:6: Lost braces
     6 |   kinship terms partition data given in \bibcitet{Gordon+Vichi:2001}.
       |                                                  ^
checkRd: (-1) Kinship82_Consensus.Rd:16: Lost braces
    16 |   applying models 1, 2, and 3 in \bibcitet{Gordon+Vichi:2001} to the
       |                                           ^
checkRd: (-1) Kinship82_Consensus.Rd:17: Lost braces
    17 |   kinship   terms partition data in \bibcitet{Rosenberg:1982}, which are
       |                                              ^
checkRd: (-1) Kinship82_Consensus.Rd:21: Lost braces
    21 |   Table 6 in \bibcitet{Gordon+Vichi:2001}.
       |                       ^
prepare_Rd: ./man/Phonemes.Rd:14: unknown macro '\bibcitet'
checkRd: (-1) Phonemes.Rd:14: Lost braces
    14 |   \bibcitet{Miller+Nicely:1955}
       |            ^
prepare_Rd: ./man/addtree.Rd:30: unknown macro '\bibcitet'
checkRd: (-1) addtree.Rd:30: Lost braces
    30 |   See, e.g., \bibcitet{Barthélemy+Guénoche:1991} for more details on
       |                       ^
prepare_Rd: ./man/cl_agreement.Rd:45: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:53: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:54: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:58: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:59: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:62: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:68: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:78: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:99: unknown macro '\bibcitet'
checkRd: (-1) cl_agreement.Rd:45: Lost braces
    45 |       See \bibcitet{Dimitriadou+Weingessel+Hornik:2002}.}
       |                    ^
checkRd: (-1) cl_agreement.Rd:53: Lost braces
    53 |       both partitions), see \bibcitet{Rand:1971} or
       |                                      ^
checkRd: (-1) cl_agreement.Rd:54: Lost braces
    54 |       \bibcitet{|R:Gordon:1999|page 198}.
       |                ^
checkRd: (-1) cl_agreement.Rd:58: Lost braces
    58 |       chance, see \bibcitet{Hubert+Arabie:1985} or
       |                            ^
checkRd: (-1) cl_agreement.Rd:59: Lost braces
    59 |       \bibcitet{|R:Gordon:1999|page 198}.
       |                ^
checkRd: (-1) cl_agreement.Rd:62: Lost braces
    62 |       \bibcitet{Strehl+Ghosh:2002}.
       |                ^
checkRd: (-1) cl_agreement.Rd:68: Lost braces
    68 |       see \bibcitet{Katz+Powell:1953}.  For soft partitions, (currently) the
       |                    ^
checkRd: (-1) cl_agreement.Rd:78: Lost braces
    78 |     \item{\code{"FM"}}{the index of \bibcitet{Fowlkes+Mallows:1983}, i.e.,
       |                                              ^
checkRd: (-1) cl_agreement.Rd:99: Lost braces
    99 |       \bibcitet{Tibshirani+Walther:2005}: the minimum, over all classes
       |                ^
prepare_Rd: ./man/cl_bag.Rd:26: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_bag.Rd:53: unknown macro '\bibcitet'
checkRd: (-1) cl_bag.Rd:26: Lost braces
    26 |     \bibcitet{Dudoit+Fridlyand:2003}.}
       |              ^
checkRd: (-1) cl_bag.Rd:53: Lost braces
    53 |   \bibcitet{Leisch:1999} and implemented by function
       |            ^
prepare_Rd: ./man/cl_consensus.Rd:46: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:96: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:107: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:164: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:242: unknown macro '\bibcitet'
checkRd: (-1) cl_consensus.Rd:46: Lost braces
    46 |   See also \bibcitet{R:Gordon:1999} for more information.
       |                     ^
checkRd: (-1) cl_consensus.Rd:96: Lost braces
    96 |         model} in \bibcitet{Gordon+Vichi:2001} for minimizing \eqn{L}
       |                            ^
checkRd: (-1) cl_consensus.Rd:107: Lost braces
   107 |       \bibcitet{Dimitriadou+Weingessel+Hornik:2002} for (approximately)
       |                ^
checkRd: (-1) cl_consensus.Rd:164: Lost braces
   164 |       model} in \bibcitet{Gordon+Vichi:2001} for minimizing \eqn{L} with
       |                          ^
checkRd: (-1) cl_consensus.Rd:242: Lost braces
   242 |       the majority consensus tree of \bibcitet{Margush+McMorris:1981},
       |                                               ^
prepare_Rd: ./man/cl_dissimilarity.Rd:43: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:67: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:72: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:79: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:104: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:109: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_dissimilarity.Rd:112: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:116: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:128: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:146: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_dissimilarity.Rd:150: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:153: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:191: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_dissimilarity.Rd:195: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:208: unknown macro '\bibcitet'
checkRd: (-1) cl_dissimilarity.Rd:43: Lost braces
    43 |       \eqn{v}.  See \bibcitet{Dimitriadou+Weingessel+Hornik:2002}.}
       |                              ^
checkRd: (-1) cl_dissimilarity.Rd:67: Lost braces
    67 |       \bibcitet{Gordon+Vichi:2001},
       |                ^
checkRd: (-1) cl_dissimilarity.Rd:72: Lost braces
    72 |       discussed in \bibcitet{Boorman+Arabie:1972}, with \var{d} one of
       |                             ^
checkRd: (-1) cl_dissimilarity.Rd:79: Lost braces
    79 |       partition into the other.  Introduced in \bibcitet{Rubin:1967}.
       |                                                         ^
checkRd: (-1) cl_dissimilarity.Rd:104: Lost braces
   104 |       Introduced in \bibcitet{Rajski:1961}.
       |                              ^
checkRd: (-1) cl_dissimilarity.Rd:109: Lost braces
   109 |       \eqn{C} distance measures is hard to compute \bibcitep{Day:1981}
       |                                                             ^
checkRd: (-1) cl_dissimilarity.Rd:112: Lost braces
   112 |       \bibcitet{Meila:2003}.  If
       |                ^
checkRd: (-1) cl_dissimilarity.Rd:116: Lost braces
   116 |       \bibcitet{Zhou+Li+Zha:2005},
       |                ^
checkRd: (-1) cl_dissimilarity.Rd:128: Lost braces
   128 |       \bibcitet{Zhou+Li+Zha:2005},
       |                ^
checkRd: (-1) cl_dissimilarity.Rd:146: Lost braces
   146 |   \bibcitep{Charon+Denoeud+Guénoche:2006},
       |            ^
checkRd: (-1) cl_dissimilarity.Rd:150: Lost braces
   150 |   \bibcitet{Day:1981},
       |            ^
checkRd: (-1) cl_dissimilarity.Rd:153: Lost braces
   153 |   \emph{partition-distance} in \bibcitet{Gusfield:2002}, and equals
       |                                         ^
checkRd: (-1) cl_dissimilarity.Rd:191: Lost braces
   191 |       \bibcitep{e.g.|Jardine+Sibson:1971|page 107},
       |                ^
checkRd: (-1) cl_dissimilarity.Rd:195: Lost braces
   195 |       \bibcitet{Boorman+Olivier:1973}, which are of the form
       |                ^
checkRd: (-1) cl_dissimilarity.Rd:208: Lost braces
   208 |       \bibcitet{Mérigot+Durbec+Gaertner:2010}.}
       |                ^
prepare_Rd: ./man/cl_medoid.Rd:24: unknown macro '\bibcitet'
checkRd: (-1) cl_medoid.Rd:24: Lost braces
    24 |   See \bibcitet{R:Gordon:1999} for more information.
       |                ^
prepare_Rd: ./man/cl_pam.Rd:20: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_pam.Rd:46: unknown macro '\bibcitep'
checkRd: (-1) cl_pam.Rd:20: Lost braces
    20 |     \bibcitep{|Kaufman+Rousseeuw:1990|Chapter 2}
       |              ^
checkRd: (-1) cl_pam.Rd:46: Lost braces
    46 |   Such secondary partitions \bibcitep{e.g.|Gordon+Vichi:1998|}
       |                                      ^
prepare_Rd: ./man/cl_pclust.Rd:59: unknown macro '\bibcitet'
checkRd: (-1) cl_pclust.Rd:59: Lost braces
    59 |   \bibcitet{Gaul+Schader:1988}
       |            ^
prepare_Rd: ./man/cl_validity.Rd:40: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_validity.Rd:42: unknown macro '\bibcitet'
checkRd: (-1) cl_validity.Rd:40: Lost braces
    40 |   (VAF, e.g., \bibcitet{Hubert+Arabie+Meulman:2006})
       |                        ^
checkRd: (-1) cl_validity.Rd:42: Lost braces
    42 |   (DEV, e.g., \bibcitet{Smith:2001}).
       |                        ^
prepare_Rd: ./man/kmedoids.Rd:35: unknown macro '\bibcitet'
prepare_Rd: ./man/kmedoids.Rd:42: unknown macro '\bibcitep'
checkRd: (-1) kmedoids.Rd:35: Lost braces
    35 |   Medoids, see \bibcitet{|Kaufman+Rousseeuw:1990|Chapter 2})
       |                         ^
checkRd: (-1) kmedoids.Rd:42: Lost braces
    42 |   \bibcitep{e.g.|Gordon+Vichi:1998|[P4']},
       |            ^
prepare_Rd: ./man/l1_fit_ultrametric.Rd:35: unknown macro '\bibcitep'
prepare_Rd: ./man/l1_fit_ultrametric.Rd:56: unknown macro '\bibcitet'
checkRd: (-1) l1_fit_ultrametric.Rd:35: Lost braces
    35 |   \bibcitep{Křivánek+Morávek:1986}.
       |            ^
checkRd: (-1) l1_fit_ultrametric.Rd:56: Lost braces
    56 |   Reweighted Iterative Projection approach of \bibcitet{Smith:2001},
       |                                                        ^
prepare_Rd: ./man/lattice.Rd:81: unknown macro '\bibcitet'
checkRd: (-1) lattice.Rd:81: Lost braces
    81 |   see \bibcitet{Barthélemy+Leclerc+Monjardet:1986}.
       |                ^
prepare_Rd: ./man/ls_fit_addtree.Rd:45: unknown macro '\bibcitep'
prepare_Rd: ./man/ls_fit_addtree.Rd:46: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_addtree.Rd:51: unknown macro '\bibcitet'
checkRd: (-1) ls_fit_addtree.Rd:45: Lost braces
    45 |   \bibcitep{Sequential Unconstrained Minimization Technique|Fiacco+McCormick:1968|}
       |            ^
checkRd: (-1) ls_fit_addtree.Rd:46: Lost braces
    46 |   approach of \bibcitet{De_Soete:1983}.
       |                        ^
checkRd: (-1) ls_fit_addtree.Rd:51: Lost braces
    51 |   \bibcitet{Hubert+Arabie:1995} and \bibcitet{Roux:1988}, respectively.
       |            ^
checkRd: (-1) ls_fit_addtree.Rd:51: Lost braces
    51 |   \bibcitet{Hubert+Arabie:1995} and \bibcitet{Roux:1988}, respectively.
       |                                              ^
prepare_Rd: ./man/ls_fit_sum_of_ultrametrics.Rd:34: unknown macro '\bibcitet'
checkRd: (-1) ls_fit_sum_of_ultrametrics.Rd:34: Lost braces
    34 |   \bibcitet{Carroll+Pruzansky:1980} which in each step \eqn{t} sequentially
       |            ^
prepare_Rd: ./man/ls_fit_ultrametric.Rd:36: unknown macro '\bibcitep'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:48: unknown macro '\bibcitep'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:49: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:50: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:57: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:88: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:122: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:123: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:138: unknown macro '\bibinfo'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:139: unknown macro '\bibinfo'
checkRd: (-1) ls_fit_ultrametric.Rd:36: Lost braces
    36 |   is known to be NP hard \bibcitep{Křivánek+Morávek:1986}.
       |                                   ^
checkRd: (-1) ls_fit_ultrametric.Rd:48: Lost braces
    48 |   \bibcitep{Sequential Unconstrained Minimization Technique|Fiacco+McCormick:1968|}
       |            ^
checkRd: (-1) ls_fit_ultrametric.Rd:49: Lost braces
    49 |   approach of \bibcitet{De_Soete:1984a} which in turn simplifies the suggestions
       |                        ^
checkRd: (-1) ls_fit_ultrametric.Rd:50: Lost braces
    50 |   in \bibcitet{Carroll+Pruzansky:1980}.  (See \code{\link{sumt}} for more
       |               ^
checkRd: (-1) ls_fit_ultrametric.Rd:57: Lost braces
    57 |   \emph{incomplete}, we follow a suggestion of \bibcitet{De_Soete:1984a}, imputing
       |                                                         ^
checkRd: (-1) ls_fit_ultrametric.Rd:88: Lost braces
    88 |   \bibcitet{Hubert+Arabie:1995}.  This iteratively projects the current
       |            ^
checkRd: (-1) ls_fit_ultrametric.Rd:122: Lost braces
   122 |   suggested by \bibcitet{Roux:1988}, see also
       |                         ^
checkRd: (-1) ls_fit_ultrametric.Rd:123: Lost braces
   123 |   \bibcitet{Barthélemy+Guénoche:1991}.
       |            ^
checkRd: (-1) ls_fit_ultrametric.Rd:138: Lost braces
   138 |   \bibinfo{De_Soete:1984a}{year}{1984a}
       |           ^
checkRd: (-1) ls_fit_ultrametric.Rd:138: Lost braces
   138 |   \bibinfo{De_Soete:1984a}{year}{1984a}
       |                           ^
checkRd: (-1) ls_fit_ultrametric.Rd:138: Lost braces
   138 |   \bibinfo{De_Soete:1984a}{year}{1984a}
       |                                 ^
checkRd: (-1) ls_fit_ultrametric.Rd:139: Lost braces
   139 |   \bibinfo{De_Soete:1984b}{year}{1984b}  
       |           ^
checkRd: (-1) ls_fit_ultrametric.Rd:139: Lost braces
   139 |   \bibinfo{De_Soete:1984b}{year}{1984b}  
       |                           ^
checkRd: (-1) ls_fit_ultrametric.Rd:139: Lost braces
   139 |   \bibinfo{De_Soete:1984b}{year}{1984b}  
       |                                 ^
prepare_Rd: ./man/pclust.Rd:90: unknown macro '\bibcitet'
checkRd: (-1) pclust.Rd:90: Lost braces
    90 |   (e.g., \bibcitet{Bezdek:1981}) is used, which alternates between computing
       |                   ^