Running ‘testthat.R’ [13m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("checkmate")
  +   library("testthat")
  +   library("mlr3")
  +   library("paradox")
  +   library("mlr3pipelines")
  +   test_check("mlr3pipelines")
  + }
  Starting 2 test processes.
  > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
  > test_Graph.R: 
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: 
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: 
  > test_PipeOp.R: Predicting test_autotrain
  > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  Saving _problems/test_filter_ensemble-294.R
  Saving _problems/test_filter_ensemble-307.R
  > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
  > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
  > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
  > test_multiplicities.R: 
  > test_multiplicities.R: [[1]]
  > test_multiplicities.R: [1] 0
  > test_multiplicities.R: 
  > test_multiplicities.R: 
  > test_pipeop_blsmote.R: [1]
  > test_pipeop_blsmote.R:  "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1]
  > test_pipeop_blsmote.R:  "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1]
  > test_pipeop_blsmote.R:  "Borderline-SMOTE done"
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.298126: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.299398: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.356761: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.446195: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.677205: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.678203: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.713646: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.77519: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.888383: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.889548: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:33.963673: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:34.217124: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:34.22714: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:34.344432: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:34.349363: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:34.402136: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:34.541137: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:34.547383: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:35.029253: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:35.0339: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:35.173469: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:35.512059: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:35.729881: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:35.73101: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:35.854639: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.562719: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.571353: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.862752: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.863407: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.879042: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.908379: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.963058: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.965769: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:36.988853: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.050907: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.054411: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.358407: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.360029: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.381763: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.440038: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.592648: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.595659: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.635804: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.700735: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.702608: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.835576: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.83871: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.851756: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.881555: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.962319: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.963335: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:37.988116: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.056096: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.057963: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.196623: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.197221: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.225657: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.255715: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.340125: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.342835: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.368426: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.440994: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.445893: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.57707: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.577729: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.595469: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.624974: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.706346: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.707345: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.758416: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.901907: embedding
  > test_pipeop_isomap.R: 2026-02-28 09:51:38.908334: DONE
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.227509: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.228217: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.25412: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.341903: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.764216: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.766929: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.79746: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.858643: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.957517: Isomap START
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.963902: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-28 09:51:39.986954: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-28 09:51:40.050243: Classical Scaling
  > test_pipeop_nmf.R: [PipeOpNMFstate]
  > test_pipeop_nmf.R: [PipeOpNMFstate]
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: 
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: 
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: 
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: 
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: 
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: 
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
  > test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
  > test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
  
  ══ Skipped tests (100) ═════════════════════════════════════════════════════════
  • On CRAN (96): 'test_CnfFormula.R:591:3', 'test_CnfFormula_simplify.R:6:3',
    'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
    'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
    'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
    'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
    'test_learner_weightedaverage.R:57:3',
    'test_learner_weightedaverage.R:105:3',
    'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
    'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
    'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
    'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
    'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
    'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
    'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
    'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
    'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
    'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
    'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
    'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
    'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
    'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
    'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
    'test_pipeop_ensemble.R:6:3', 'test_pipeop_ica.R:7:3',
    'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
    'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
    'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
    'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
    'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
    'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
    'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
    'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
    'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
    'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
    'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
    'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
    'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
    'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
    'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
    'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:6:3',
    'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
    'test_pipeop_nmf.R:6:3', 'test_pipeop_targettrafo.R:4:3',
    'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafoscalerange.R:5:3',
    'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
    'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
    'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
    'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
    'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
    'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
  • Skipping (1): 'test_GraphLearner.R:1278:3'
  • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
    'test_ppl.R:61:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
  Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
  Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
  Differences:
  `actual` is a character vector ('Mean relative difference: 0.3845363')
  `expected` is a logical vector (TRUE)
  
  Backtrace:
      ▆
   1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
   2.   └─testthat::expect_true(...)
  
  [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
  Error:
  ! Test failures.
  Execution halted