Running ‘testthat.R’ [320s/157s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("checkmate")
  +   library("testthat")
  +   library("mlr3")
  +   library("paradox")
  +   library("mlr3pipelines")
  +   test_check("mlr3pipelines")
  + }
  Starting 2 test processes.
  > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  Saving _problems/test_filter_ensemble-294.R
  Saving _problems/test_filter_ensemble-307.R
  > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
  > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
  > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
  > test_multiplicities.R: 
  > test_multiplicities.R: [[1]]
  > test_multiplicities.R: [1] 0
  > test_multiplicities.R: 
  > test_multiplicities.R: 
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.442871: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.443601: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.451955: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.465989: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.505101: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.505521: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.513376: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.527384: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.548577: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.54917: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.560991: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.593117: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.594176: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.615087: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.615498: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.627084: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.66096: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.662004: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.729419: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.729841: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.74149: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.817644: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.850194: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.850805: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:12.887985: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.061665: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.065781: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.18503: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.185437: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.191962: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.206986: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.233859: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.23448: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.247051: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.278863: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.280029: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.39159: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.391987: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.398019: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.412693: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.45493: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.455586: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.469181: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.501204: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.515719: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.584087: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.584505: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.591557: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.605142: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.647175: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.647764: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.66077: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.693316: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.694435: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.75739: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.757778: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.763628: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.776847: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.813484: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.814074: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.826098: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.859107: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.860105: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.921144: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.921547: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.927696: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.941076: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.981452: L-Isomap embed START
  > test_pipeop_isomap.R: 2026-02-24 17:32:13.982025: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.007214: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.038527: embedding
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.039623: DONE
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.109793: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.110162: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.115961: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.129734: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.194056: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.19443: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.200853: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.214693: Classical Scaling
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.235593: Isomap START
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.235976: constructing knn graph
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.24243: calculating geodesic distances
  > test_pipeop_isomap.R: 2026-02-24 17:32:14.256369: Classical Scaling
  > test_pipeop_nmf.R: [PipeOpNMFstate]
  > test_pipeop_nmf.R: [PipeOpNMFstate]
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
  
  ══ Skipped tests (100) ═════════════════════════════════════════════════════════
  • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
    'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
    'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
    'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
    'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
    'test_learner_weightedaverage.R:57:3',
    'test_learner_weightedaverage.R:105:3',
    'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
    'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
    'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
    'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
    'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
    'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
    'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
    'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
    'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
    'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
    'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
    'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
    'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
    'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
    'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ensemble.R:6:3',
    'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
    'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
    'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
    'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
    'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
    'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
    'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
    'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
    'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
    'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
    'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
    'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
    'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
    'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
    'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
    'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
    'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
    'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
    'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
    'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
    'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
    'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
    'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
    'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
    'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
    'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
  • Skipping (1): 'test_GraphLearner.R:1278:3'
  • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
    'test_ppl.R:61:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
  Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
  Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
  Differences:
  `actual` is a character vector ('Mean relative difference: 1.581235')
  `expected` is a logical vector (TRUE)
  
  Backtrace:
      ▆
   1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
   2.   └─testthat::expect_true(...)
  
  [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
  Error:
  ! Test failures.
  Execution halted