Running ‘testthat.R’ [28s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(centerline)
  > 
  > test_check("centerline")
  [gannet:851215:0:851215] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x28)
  ==== backtrace (tid: 851215) ====
   0  /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7f34b057ddf4]
   1  /lib64/libucs.so.0(+0x17aed) [0x7f34b057faed]
   2  /lib64/libucs.so.0(+0x17cbd) [0x7f34b057fcbd]
   3  /lib64/libc.so.6(+0x19c30) [0x7f34c6d29c30]
   4  /data/gannet/ripley/R/test-clang/raybevel/libs/raybevel.so(_Z16skeletonize_rcppN4Rcpp6MatrixILi14ENS_15PreserveStorageEEENS_6VectorILi19ES1_EEd+0xcb9) [0x7f33eacd6f39]
   5  /data/gannet/ripley/R/test-clang/raybevel/libs/raybevel.so(_raybevel_skeletonize_rcpp+0x83) [0x7f33eacbef83]
   6  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f583) [0x55ee3a8f3583]
   7  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde350) [0x55ee3a942350]
   8  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc718c) [0x55ee3a92b18c]
   9  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55ee3a92a915]
  10  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3d09) [0x55ee3a947d09]
  11  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe320c) [0x55ee3a94720c]
  12  /data/gannet/ripley/R/R-clang/bin/exec/R(R_forceAndCall+0x365) [0x55ee3a94a6e5]
  13  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x157ec) [0x55ee3a8797ec]
  14  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e168) [0x55ee3a992168]
  15  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf00c) [0x55ee3a93300c]
  16  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc718c) [0x55ee3a92b18c]
  17  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55ee3a92a915]
  18  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3d09) [0x55ee3a947d09]
  19  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe320c) [0x55ee3a94720c]
  20  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7b36) [0x55ee3a92bb36]
  21  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x130432) [0x55ee3a994432]
  22  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12fe59) [0x55ee3a993e59]
  23  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x13098e) [0x55ee3a99498e]
  24  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf00c) [0x55ee3a93300c]
  25  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc718c) [0x55ee3a92b18c]
  26  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55ee3a92a915]
  27  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3d09) [0x55ee3a947d09]
  28  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe320c) [0x55ee3a94720c]
  29  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc7b36) [0x55ee3a92bb36]
  30  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x130432) [0x55ee3a994432]
  31  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12fe59) [0x55ee3a993e59]
  32  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x13098e) [0x55ee3a99498e]
  33  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf00c) [0x55ee3a93300c]
  34  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc718c) [0x55ee3a92b18c]
  35  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55ee3a92a915]
  36  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3d09) [0x55ee3a947d09]
  37  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe320c) [0x55ee3a94720c]
  38  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55ee3a92ad66]
  39  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d53c) [0x55ee3a8f153c]
  40  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xced8b) [0x55ee3a932d8b]
  41  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc718c) [0x55ee3a92b18c]
  42  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55ee3a92a915]
  43  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3d09) [0x55ee3a947d09]
  44  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe320c) [0x55ee3a94720c]
  45  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55ee3a92ad66]
  46  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe83cb) [0x55ee3a94c3cb]
  47  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55ee3a92ab40]
  48  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xea778) [0x55ee3a94e778]
  49  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xced8b) [0x55ee3a932d8b]
  50  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc718c) [0x55ee3a92b18c]
  51  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55ee3a92a915]
  52  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3d09) [0x55ee3a947d09]
  53  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe320c) [0x55ee3a94720c]
  54  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55ee3a92ad66]
  55  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xeab58) [0x55ee3a94eb58]
  56  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xced8b) [0x55ee3a932d8b]
  57  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc718c) [0x55ee3a92b18c]
  58  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55ee3a92a915]
  59  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3d09) [0x55ee3a947d09]
  60  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe320c) [0x55ee3a94720c]
  61  /data/gannet/ripley/R/R-clang/bin/exec/R(R_forceAndCall+0x365) [0x55ee3a94a6e5]
  =================================
  
   *** caught segfault ***
  address 0x4d2000cfd0f, cause 'unknown'
  
  Traceback:
   1: skeletonize_rcpp(vertices, holes, 0)
   2: raybevel::skeletonize(vertices = geos_outer, holes = geos_inner,     return_raw_ss = FALSE)
   3: FUN(X[[i]], ...)
   4: lapply(input, cnt_skeleton_straight, keep = keep)
   5: do.call(c, lapply(input, cnt_skeleton_straight, keep = keep))
   6: cnt_skeleton.geos_geometry(input = input_geos, ...)
   7: cnt_skeleton(input = input_geos, ...)
   8: cnt_path_guess.sf(polygon, method = "straight", keep = 1.1)
   9: cnt_path_guess(polygon, method = "straight", keep = 1.1)
  10: eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  11: withCallingHandlers(expr, condition = function(cnd) {    if (!is.null(matched) || !matches(cnd)) {        return()    }    if (can_entrace(cnd)) {        cnd <- cnd_entrace(cnd)    }    matched <<- cnd    if (inherits(cnd, "message") || inherits(cnd, "warning")) {        cnd_muffle(cnd)    }    else if (inherits(cnd, "error") || inherits(cnd, "skip")) {        return_from(tl, cnd)    }})
  12: .capture(act$val <- eval_bare(quo_get_expr(.quo), quo_get_env(.quo)),     ...)
  13: quasi_capture(enquo(object), label, capture_matching_condition,     matches = matcher)
  14: expect_condition_matching_("warning", {    {        object    }}, regexp = regexp, class = class, ..., inherit = inherit, info = info,     label = label)
  15: expect_warning(cnt_path_guess(polygon, method = "straight", keep = 1.1))
  16: eval(code, test_env)
  17: eval(code, test_env)
  18: withCallingHandlers({    eval(code, test_env)    new_expectations <- the$test_expectations > starting_expectations    if (snapshot_skipped) {        skip("On CRAN")    }    else if (!new_expectations && skip_on_empty) {        skip_empty()    }}, expectation = handle_expectation, packageNotFoundError = function(e) {    if (on_cran()) {        skip(paste0("{", e$package, "} is not installed."))    }}, snapshot_on_cran = function(cnd) {    snapshot_skipped <<- TRUE    invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message,     error = handle_error, interrupt = handle_interrupt)
  19: doTryCatch(return(expr), name, parentenv, handler)
  20: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  21: tryCatchList(expr, classes, parentenv, handlers)
  22: tryCatch(withCallingHandlers({    eval(code, test_env)    new_expectations <- the$test_expectations > starting_expectations    if (snapshot_skipped) {        skip("On CRAN")    }    else if (!new_expectations && skip_on_empty) {        skip_empty()    }}, expectation = handle_expectation, packageNotFoundError = function(e) {    if (on_cran()) {        skip(paste0("{", e$package, "} is not installed."))    }}, snapshot_on_cran = function(cnd) {    snapshot_skipped <<- TRUE    invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message,     error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
  23: doWithOneRestart(return(expr), restart)
  24: withOneRestart(expr, restarts[[1L]])
  25: withRestarts(tryCatch(withCallingHandlers({    eval(code, test_env)    new_expectations <- the$test_expectations > starting_expectations    if (snapshot_skipped) {        skip("On CRAN")    }    else if (!new_expectations && skip_on_empty) {        skip_empty()    }}, expectation = handle_expectation, packageNotFoundError = function(e) {    if (on_cran()) {        skip(paste0("{", e$package, "} is not installed."))    }}, snapshot_on_cran = function(cnd) {    snapshot_skipped <<- TRUE    invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message,     error = handle_error, interrupt = handle_interrupt), error = handle_fatal),     end_test = function() {    })
  26: test_code(code, parent.frame())
  27: test_that("cnt_path_guess inherits params", {    skip_if_not_installed("raybevel")    polygon <- polygon_sf    skeleton <- skeleton_sf    result <- cnt_path_guess(polygon)    result_keep1 <- cnt_path_guess(polygon, keep = 1)    result_straight <- cnt_path_guess(polygon, method = "straight")    result_straight_geos <- cnt_path_guess(polygon, method = "s",         return_geos = TRUE)    expect_s3_class(result, "sf")    expect_s3_class(result_keep1, "sf")    expect_s3_class(result_straight, "sf")    expect_contains(get_geom_type(result), "LINESTRING")    expect_contains(get_geom_type(result_keep1), "LINESTRING")    expect_contains(get_geom_type(result_straight), "LINESTRING")    expect_s3_class(result_straight_geos, c("geos_geometry"))    expect_contains(get_geom_type(result_straight_geos), "linestring")    expect_equal(wk::wk_crs(result_straight_geos), wk::wk_crs(polygon))    expect_false(identical(sf::st_length(result), sf::st_length(result_straight)))    expect_error(cnt_path_guess(polygon, keep = 10))    expect_error(cnt_path_guess(polygon, keep = -1))    expect_error(cnt_path_guess(polygon, method = "asdf"))    expect_error(cnt_path_guess(polygon, keep = 1, method = "asdf"))    expect_warning(cnt_path_guess(polygon, method = "straight",         keep = 1.1))})
  28: eval(code, test_env)
  29: eval(code, test_env)
  30: withCallingHandlers({    eval(code, test_env)    new_expectations <- the$test_expectations > starting_expectations    if (snapshot_skipped) {        skip("On CRAN")    }    else if (!new_expectations && skip_on_empty) {        skip_empty()    }}, expectation = handle_expectation, packageNotFoundError = function(e) {    if (on_cran()) {        skip(paste0("{", e$package, "} is not installed."))    }}, snapshot_on_cran = function(cnd) {    snapshot_skipped <<- TRUE    invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message,     error = handle_error, interrupt = handle_interrupt)
  31: doTryCatch(return(expr), name, parentenv, handler)
  32: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  33: tryCatchList(expr, classes, parentenv, handlers)
  34: tryCatch(withCallingHandlers({    eval(code, test_env)    new_expectations <- the$test_expectations > starting_expectations    if (snapshot_skipped) {        skip("On CRAN")    }    else if (!new_expectations && skip_on_empty) {        skip_empty()    }}, expectation = handle_expectation, packageNotFoundError = function(e) {    if (on_cran()) {        skip(paste0("{", e$package, "} is not installed."))    }}, snapshot_on_cran = function(cnd) {    snapshot_skipped <<- TRUE    invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message,     error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
  35: doWithOneRestart(return(expr), restart)
  36: withOneRestart(expr, restarts[[1L]])
  37: withRestarts(tryCatch(withCallingHandlers({    eval(code, test_env)    new_expectations <- the$test_expectations > starting_expectations    if (snapshot_skipped) {        skip("On CRAN")    }    else if (!new_expectations && skip_on_empty) {        skip_empty()    }}, expectation = handle_expectation, packageNotFoundError = function(e) {    if (on_cran()) {        skip(paste0("{", e$package, "} is not installed."))    }}, snapshot_on_cran = function(cnd) {    snapshot_skipped <<- TRUE    invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message,     error = handle_error, interrupt = handle_interrupt), error = handle_fatal),     end_test = function() {    })
  38: test_code(code = exprs, env = env, reporter = get_reporter() %||%     StopReporter$new())
  39: source_file(path, env = env(env), desc = desc, shuffle = shuffle,     error_call = error_call)
  40: FUN(X[[i]], ...)
  41: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle,     error_call = error_call)
  42: doTryCatch(return(expr), name, parentenv, handler)
  43: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  44: tryCatchList(expr, classes, parentenv, handlers)
  45: tryCatch(code, testthat_abort_reporter = function(cnd) {    cat(conditionMessage(cnd), "\n")    NULL})
  46: with_reporter(reporters$multi, lapply(test_paths, test_one_file,     env = env, desc = desc, shuffle = shuffle, error_call = error_call))
  47: test_files_serial(test_dir = test_dir, test_package = test_package,     test_paths = test_paths, load_helpers = load_helpers, reporter = reporter,     env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     desc = desc, load_package = load_package, shuffle = shuffle,     error_call = error_call)
  48: test_files(test_dir = path, test_paths = test_paths, test_package = package,     reporter = reporter, load_helpers = load_helpers, env = env,     stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     load_package = load_package, parallel = parallel, shuffle = shuffle)
  49: test_dir("testthat", package = package, reporter = reporter,     ..., load_package = "installed")
  50: test_check("centerline")
  An irrecoverable exception occurred. R is aborting now ...