Running ‘testthat.R’ [77s/102s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > if (requireNamespace("testthat")) {
  +   library("testthat")
  +   library("popEpi")
  +   library("data.table")
  + 
  +   using_r_devel <- grepl(pattern = "devel", x = R.version$status)
  +   if (using_r_devel) {
  +     ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
  +     requireNamespace("data.table")
  +     data.table::setDTthreads(threads = 1L)
  +   }
  + 
  +   testthat::test_check("popEpi")
  + }
  Loading required namespace: testthat
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  Saving _problems/test_Surv-18.R
  NOTE: entry.status has been set to "DM" for all.
     first.bad.surv.int last.bad.surv.int surv.obs
                  <int>             <int>    <num>
  1:                 61               120      NaN
     first.bad.surv.int last.bad.surv.int surv.obs
                  <int>             <int>    <num>
  1:                 61               120      NaN
  Key: <agegr>
     agegr first.bad.surv.int last.bad.surv.int surv.obs
     <int>              <int>             <int>    <num>
  1:     3                 61               120      NaN
  Key: <agegr>
     agegr first.bad.surv.int last.bad.surv.int surv.obs
     <int>              <int>             <int>    <num>
  1:     3                 61               120      NaN
  [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
  
  ══ Skipped tests (41) ══════════════════════════════════════════════════════════
  • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
    'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
    'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
    'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
    'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
    'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
    'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
    'test_splitting_randomly_on_fixed_data.R:9:3',
    'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
    'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
    'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
    'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5',
    'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
    'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
    'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
    'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
    'test_weighter.R:99:3', 'test_weighter.R:122:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ──
  Expected `popepi_formals` to be identical to `survival_formals`.
  Differences:
  Component "type": target, current do not match when deparsed
  
  [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ]
  Error:
  ! Test failures.
  Execution halted