Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [30s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(SomaDataIO)
  ═══════════════════════════════════════════════════════════════════════ Legal ══
     SomaDataIO™
     
     Copyright © 2025 Standard BioTools, Inc.
     
     The `SomaDataIO` package is licensed under the MIT license
     (`LICENSE.md`) and is intended solely for research use only ("RUO")
     purposes. The code contained herein may *not* be used for
     diagnostic, clinical, therapeutic, or other commercial purposes.
     Further, "SomaDataIO" and "SomaLogic" are trademarks owned by
     Standard BioTools, Inc. No license is hereby granted to these
     trademarks other than for purposes of identifying the origin or
     source of the Software. The above copyright notice and this
     permission notice shall be included in all copies or substantial
     portions of the Software.
     
     THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
     EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
     MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
     NONINFRINGEMENT.  IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
     HOLDER(S) BE LIABLE FOR ANY CLAIM, DAMAGES, WHETHER DIRECT OR
     INDIRECT, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT
     OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
     SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
  ════════════════════════════════════════════════════════════════════════════════
  
  Attaching package: 'SomaDataIO'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > 
  > test_check("SomaDataIO")
  v ADAT passed all checks and traps.
  v ADAT passed all checks and traps.
  v ADAT passed all checks and traps.
  v ADAT passed all checks and traps.
  Saving _problems/test-dplyr-verbs-135.R
  x The object is not a `soma_adat` class object: "data.frame"
  x Header.Meta and/or Col.Meta missing from attributes.
  x Header.Meta and/or Col.Meta missing from attributes.
  x Header.Meta is missing: "HEADER", "COL_DATA", and "ROW_DATA"
  x Col.Meta is missing: "SeqId", "Dilution", "Target", and "Units"
  x Col.Meta is not a tibble! -> "list"
  v ADAT passed all checks and traps.
  v ADAT written to: "/tmp/RtmpPc7oGs/write-2596196a847397.adat"
  v ADAT passed all checks and traps.
  v ADAT written to: "/tmp/RtmpPc7oGs/write-25961972ae6c67.adat"
  v ADAT passed all checks and traps.
  v ADAT written to: "/tmp/RtmpPc7oGs/write-2596195dab1a21.txt"
  v ADAT passed all checks and traps.
  v ADAT written to: "/tmp/RtmpPc7oGs/write-2596193b776c0e.adat"
  v ADAT passed all checks and traps.
  v ADAT written to: "/tmp/RtmpPc7oGs/write-2596192709d9f9.adat"
  [ FAIL 1 | WARN 0 | SKIP 35 | PASS 993 ]
  
  ══ Skipped tests (35) ══════════════════════════════════════════════════════════
  • On CRAN (34): 'test-S3-median.R:4:1', 'test-S3-merge.R:3:1',
    'test-S3-print.R:11:1', 'test-S3-print.R:16:1', 'test-S3-print.R:21:1',
    'test-S3-print.R:26:1', 'test-S3-print.R:32:1', 'test-S3-summary.R:49:1',
    'test-diffAdats.R:6:1', 'test-diffAdats.R:10:1', 'test-diffAdats.R:15:1',
    'test-diffAdats.R:20:1', 'test-diffAdats.R:27:1', 'test-diffAdats.R:34:1',
    'test-getAnalytes.R:23:3', 'test-getTargetNames.R:11:1',
    'test-groupGenerics.R:77:1', 'test-groupGenerics.R:182:1',
    'test-is-intact-attr.R:44:1', 'test-loadAdatsAsList.R:21:1',
    'test-loadAdatsAsList.R:27:1', 'test-loadAdatsAsList.R:57:1',
    'test-parseCheck.R:8:1', 'test-parseHeader.R:7:1',
    'test-preProcessAdat.R:2:1', 'test-preProcessAdat.R:22:1',
    'test-read-adat.R:12:1', 'test-read-adat.R:38:1',
    'test-scaleAnalytes.R:65:1', 'test-scaleAnalytes.R:71:1',
    'test-utils-read-adat.R:9:1', 'test-utils-read-adat.R:151:1',
    'test-utils-release.R:3:1', 'test-utils-release.R:16:1'
  • On Linux (1): 'test-preProcessAdat.R:7:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-dplyr-verbs.R:135:3'): `left_join()` method produces expected output ──
  Expected `names(attributes(new))` to equal `names(attributes(data))`.
  Differences:
      actual        | expected         
  [1] "names"       | "names"       [1]
  [2] "row.names"   - "class"       [2]
  [3] "class"       - "row.names"   [3]
  [4] "Header.Meta" | "Header.Meta" [4]
  [5] "Col.Meta"    | "Col.Meta"    [5]
  [6] "file_specs"  | "file_specs"  [6]
  
  
  [ FAIL 1 | WARN 0 | SKIP 35 | PASS 993 ]
  Deleting unused snapshots: 'preProcessAdat/preProcessAdat_qc_plot_Age.png'
  Error:
  ! Test failures.
  Execution halted