Running ‘testthat.R’ [0m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(rworkflows)
  > 
  > test_check("rworkflows")
  Saving yaml ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/file33b157602c0060myenv_conda.yml
  Saving yaml ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/file33b157602c0060myenv_conda.yml
  Saving yaml ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/file33b157602c0060myenv_conda.yml
  name: myenv
  channels:
  - conda-forge
  - nodefaults
  dependencies:
  - anndata
  - scanpy
  Saving yaml ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/file33b157602c0060myenv_conda.yml
  Loading required namespace: reticulate
  Only tag name supplied to 'cont'. Assuming default= 'bioconductor/bioconductor_docker'
  Constructing DESCRIPTION files for 1 R package(s).
  Constructing DESCRIPTION for: ABSSeq
  trying URL 'https://github.com/neurogenomics/templateR/raw/master/DESCRIPTION'
  Saving _problems/test-fill_description-5.R
  Cannot import DESCRIPTION file: NULL
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Cannot import DESCRIPTION file: /data/gannet/ripley/R/packages/tests-devel/rworkflows.Rcheck/tests/DESCRIPTION
  Skipping test.
  Cannot import DESCRIPTION file: NULL
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Cannot find hex URL domain name. Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Saving _problems/test-get_hex-66.R
  Skipping test.
  Skipping test.
  Loading required namespace: biocViews
  trying URL 'https://github.com/neurogenomics/templateR/raw/master/DESCRIPTION'
  Saving _problems/test-infer_deps-7.R
  Hello world
  Creating new dev container config file ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/devcontainer.json
  Using existing dev container config file ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/devcontainer.json
  Config file preview:
  {"image":["ghcr.io/neurogenomics/rworkflows:dev"],"features":{"ghcr.io/devcontainers/features/conda:1":[]},"customizations":{"vscode":{"settings":[],"extensions":[["reditorsupport.r"],["visualstudioexptteam.vscodeintellicode"],["ionutvmi.path-autocomplete"]]}}}Creating new Docker file ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/Dockerfile
  Using existing Docker file: /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/Dockerfile
  Docker file preview:
  Creating new Issue Template ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/bug_report.yml
  Creating new Issue Template ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/feature_request.yml
  Creating new Issue Template ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/config.yml
  Using existing Issue Template: /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/bug_report.yml
  Issue Template preview:
  Using existing Issue Template: /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/feature_request.yml
  Issue Template preview:
  Using existing Issue Template: /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/config.yml
  Issue Template preview:
  Creating new README file ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/README.Rmd
  Using existing README file: /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/README.Rmd
  README file preview:
  Creating new vignette file ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/vignettes/docker.Rmd
  Using existing vignette file: /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/vignettes/docker.Rmd
  Vignette file preview:
  Creating new vignette file ==> /tmp/RtmpE6wNy2/working_dir/RtmpnXU4Gq/vignettes/mypackage.Rmd
  [ FAIL 3 | WARN 4 | SKIP 11 | PASS 60 ]
  
  ══ Skipped tests (11) ══════════════════════════════════════════════════════════
  • On CRAN (11): 'test-bioc_r_versions.R:3:3', 'test-check_cont.R:4:5',
    'test-check_r_version.R:3:3', 'test-construct_cont.R:22:3',
    'test-construct_runners.R:3:3', 'test-get_description.R:1:1',
    'test-get_yaml.R:2:3', 'test-gha_python_versions.R:3:3',
    'test-url_exists.R:3:3', 'test-use_badges.R:2:3', 'test-use_workflow.R:2:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-fill_description.R:5:3'): fill_description works ───────────────
  Error in `utils::download.file(url, path)`: cannot open URL 'https://github.com/neurogenomics/templateR/raw/master/DESCRIPTION'
  Backtrace:
      ▆
   1. └─utils::download.file(url, path) at test-fill_description.R:5:3
  ── Failure ('test-get_hex.R:64:3'): get_hex works ──────────────────────────────
  Expected `hex11[[1]]` to equal "https://github.com/neurogenomics/rworkflows/raw/master/inst/hex/hex.png".
  Differences:
  `actual` is NULL
  `expected` is a character vector ('https://github.com/neurogenomics/rworkflows/raw/master/inst/hex/hex.png')
  
  ── Error ('test-infer_deps.R:7:3'): infer_deps works ───────────────────────────
  Error in `utils::download.file(url, path)`: cannot open URL 'https://github.com/neurogenomics/templateR/raw/master/DESCRIPTION'
  Backtrace:
      ▆
   1. └─utils::download.file(url, path) at test-infer_deps.R:7:3
  
  [ FAIL 3 | WARN 4 | SKIP 11 | PASS 60 ]
  Error:
  ! Test failures.
  Execution halted