Error(s) in re-building vignettes:
--- re-building 'Baseline-Vignette.Rmd' using rmarkdown
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
--- finished re-building 'Baseline-Vignette.Rmd'

--- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
--- finished re-building 'DistToNearest-Vignette.Rmd'

--- re-building 'Mutation-Vignette.Rmd' using rmarkdown
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
--- finished re-building 'Mutation-Vignette.Rmd'

--- re-building 'Shmulate-Vignette.Rmd' using rmarkdown
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdftex: critical issue: You are running MiKTeX on an unsupported version of Windows.
pdfcrop: critical issue: You are running MiKTeX on an unsupported version of Windows.
--- finished re-building 'Shmulate-Vignette.Rmd'

--- re-building 'Targeting-Vignette.Rmd' using rmarkdown

Quitting from Targeting-Vignette.Rmd:166-170 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [2] must be the same length as the vector [0]
---
Backtrace:
    x
 1. \-shazam::plotMutability(model, nucleotides = "A", style = "hedgehog")
 2.   \-base::`colnames<-`(`*tmp*`, value = paste0("pos", 1:ncol(mut_positions)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics:
'names' attribute [2] must be the same length as the vector [0]
--- failed re-building 'Targeting-Vignette.Rmd'

SUMMARY: processing the following file failed:
  'Targeting-Vignette.Rmd'

Error: Vignette re-building failed.
Execution halted