Running 'spelling.R' [0s]
  Running 'testthat.R' [410s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(scStability)
  > 
  > test_check("scStability")
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  Normalizing layer: counts
  Performing log-normalization
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  Finding variable features for layer counts
  Calculating gene variances
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  Calculating feature variances of standardized and clipped values
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  Centering and scaling data matrix
  
    |                                                                            
    |                                                                      |   0%
    |                                                                            
    |===================================                                   |  50%
    |                                                                            
    |======================================================================| 100%
  PC_ 1 
  Positive:  Dner, Olfm1, Elmod1, Ogfrl1, Camk2b, Rph3a, D3Bwg0562e, Sema3c, Rgs7bp, Slc2a13 
  	   Nr2f1, Eef1a2, Syn2, Nfib, Shisa9, Nfix, Tspan5, Htr3a, Slc6a1, Spock1 
  	   Prkar2b, Chd3, Rab6a, Cpne7, Lrp12, Cxcl14, Atp2b2, Ptprm, Plcxd2, Cdk5r1 
  Negative:  Rab3b, Zwint, Fth1, Ngfrap1, Sst, Gm6402, Lgals1, Rps15a-ps4, Rps20, 1500004A13Rik 
  	   Gpx1, Crhbp, Gm15421, Plp1, Tmsb4x, OTTMUSG00000016609-loc3, Ptn, Csrp1, Prdx1, Schip1 
  	   Sepp1, Ndufab1, Cd9, mt-Tv, Gm14305, OTTMUSG00000016609-loc4, Fabp5, Cnp, Gm14436, Gatm 
  PC_ 2 
  Positive:  Mpped1, Lamp5, Adcy1, Bcl11a, Tsc22d1, Sema5a, Akap5, Itpr1, Hapln1, Tox3 
  	   Gabrd, Bcl11b, Nxph1, Crispld1, Rapgef4, Cap2, Grm5, Lin7a, Gda, Cpne8 
  	   Car4, Scube1, Gad2, Hlf, Caln1, Cacna2d1, Tnnt1, Enc1, Plk2, Rasl11a 
  Negative:  Npas1, Ddah1, Fxyd6, Gng4, Cplx2, Nrxn3, Rgs12, Trp53i11, Cnr1, Synpr 
  	   Asic1, Vip, Npas3, Fstl5, Sncg, Wnt5a, Kazn, Enho, Galnt18, Htr3a 
  	   Pcdh20, Cadps2, Marcks, Pde5a, Kctd12, Stk32c, Cpne2, Igf1, Fgf1, Cd63 
  PC_ 3 
  Positive:  Cryab, Id2, Trf, Plp1, Gng11, Hapln2, Car14, Ermn, Mog, Gatm 
  	   Apod, Mal, Tmem125, Mobp, Ugt8a, Elovl1, Car2, Aspa, Mag, Tmem63a 
  	   Mbp, Cmtm5, Pdlim2, Sema3c, Cnp, Cldn11, Gsn, 2810468N07Rik, Csrp1, Enpp6 
  Negative:  Grm1, Shisa6, Satb1, Elfn1, Kctd8, Trpc6, Slc24a2, Grin3a, Lphn2, Car10 
  	   Lmo4, Ephx4, Grik3, Cdh13, Kcnc2, Gria3, Lhx6, Tshz3, Vsnl1, Nppc 
  	   Ppargc1a, Dpp10, Sst, Gria1, Runx1t1, Lypd6, Coch, Chst15, Timp3, Eya1 
  PC_ 4 
  Positive:  Rgs16, Rgs10, Dlx6os1, Rgs8, Sparcl1, Cck, Pnoc, Ppp1r2, Dlx1os, Tsc22d1 
  	   Npy, Trp53i11, Nov, Ldhb, Frmd7, Dnajc15, Luzp2, Xist, Sp8, Mgll 
  	   Car4, Ndufab1, Dhx32, Prss23, Frem1, Ociad2, Vip, Golm1, Htr1f, Gabrd 
  Negative:  Mag, Camk2n1, Dbndd2, Mog, Cmtm5, Mbp, Atp1a1, Elovl1, Mal, Apod 
  	   Pou3f3, Gsn, Csrp1, Mobp, Hapln2, Cnp, Trf, Tmem88b, 2610017I09Rik, Ildr2 
  	   Car14, Tmem63a, Elovl7, Ugt8a, Ermn, Cd82, Cldn11, Pex5l, Gng12, Pcdh18 
  PC_ 5 
  Positive:  Neto1, Timp2, Pde1a, Gng2, Necab1, Cplx2, Ralyl, Gap43, Fxyd7, Reln 
  	   Tnfaip8l3, Tmem91, Mmp17, Egln3, Ramp1, Zcchc12, Qpct, Serpina3n, Ptprm, Ildr2 
  	   Spock3, E130309F12Rik, Clu, Snca, Npas3, Col25a1, Rimkla, Fabp5, Celf6, Eps8 
  Negative:  Pthlh, Ptpre, Wnt5b, Caln1, Myl1, Grpr, Hpcal1, Pygm, Clstn2, Ano4 
  	   Ptprd, Sall1, Crispld2, Penk, Gpr176, Col24a1, Tiam1, Pde8b, Cadm2, Ppargc1a 
  	   Pcdh10, Col26a1, Mybpc1, Btbd3, Vsnl1, Cbln2, Scgn, AI848285, Osbpl1a, Scn5a 
  Saving _problems/test-clustStable-14.R
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  Mean of Mean Correlation per Embedding: 0.8930
  95 Percent CI of Mean Correlation per Embedding: [0.8712, 0.9105]
  Mean Correlation Range: Min = 0.8693 Max = 0.9111
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  see ?scRNAseq and browseVignettes('scRNAseq') for documentation
  loading from cache
  Normalizing layer: counts
  Performing log-normalization
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  Finding variable features for layer counts
  Calculating gene variances
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  Calculating feature variances of standardized and clipped values
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  Centering and scaling data matrix
  
    |                                                                            
    |                                                                      |   0%
    |                                                                            
    |===================================                                   |  50%
    |                                                                            
    |======================================================================| 100%
  PC_ 1 
  Positive:  Dner, Olfm1, Elmod1, Ogfrl1, Camk2b, Rph3a, D3Bwg0562e, Sema3c, Rgs7bp, Slc2a13 
  	   Nr2f1, Eef1a2, Syn2, Nfib, Shisa9, Nfix, Tspan5, Htr3a, Slc6a1, Spock1 
  	   Prkar2b, Chd3, Rab6a, Cpne7, Lrp12, Cxcl14, Atp2b2, Ptprm, Plcxd2, Cdk5r1 
  Negative:  Rab3b, Zwint, Fth1, Ngfrap1, Sst, Gm6402, Lgals1, Rps15a-ps4, Rps20, 1500004A13Rik 
  	   Gpx1, Crhbp, Gm15421, Plp1, Tmsb4x, OTTMUSG00000016609-loc3, Ptn, Csrp1, Prdx1, Schip1 
  	   Sepp1, Ndufab1, Cd9, mt-Tv, Gm14305, OTTMUSG00000016609-loc4, Fabp5, Cnp, Gm14436, Gatm 
  PC_ 2 
  Positive:  Mpped1, Lamp5, Adcy1, Bcl11a, Tsc22d1, Sema5a, Akap5, Itpr1, Hapln1, Tox3 
  	   Gabrd, Bcl11b, Nxph1, Crispld1, Rapgef4, Cap2, Grm5, Lin7a, Gda, Cpne8 
  	   Car4, Scube1, Gad2, Hlf, Caln1, Cacna2d1, Tnnt1, Enc1, Plk2, Rasl11a 
  Negative:  Npas1, Ddah1, Fxyd6, Gng4, Cplx2, Nrxn3, Rgs12, Trp53i11, Cnr1, Synpr 
  	   Asic1, Vip, Npas3, Fstl5, Sncg, Wnt5a, Kazn, Enho, Galnt18, Htr3a 
  	   Pcdh20, Cadps2, Marcks, Pde5a, Kctd12, Stk32c, Cpne2, Igf1, Fgf1, Cd63 
  PC_ 3 
  Positive:  Cryab, Id2, Trf, Plp1, Gng11, Hapln2, Car14, Ermn, Mog, Gatm 
  	   Apod, Mal, Tmem125, Mobp, Ugt8a, Elovl1, Car2, Aspa, Mag, Tmem63a 
  	   Mbp, Cmtm5, Pdlim2, Sema3c, Cnp, Cldn11, Gsn, 2810468N07Rik, Csrp1, Enpp6 
  Negative:  Grm1, Shisa6, Satb1, Elfn1, Kctd8, Trpc6, Slc24a2, Grin3a, Lphn2, Car10 
  	   Lmo4, Ephx4, Grik3, Cdh13, Kcnc2, Gria3, Lhx6, Tshz3, Vsnl1, Nppc 
  	   Ppargc1a, Dpp10, Sst, Gria1, Runx1t1, Lypd6, Coch, Chst15, Timp3, Eya1 
  PC_ 4 
  Positive:  Rgs16, Rgs10, Dlx6os1, Rgs8, Sparcl1, Cck, Pnoc, Ppp1r2, Dlx1os, Tsc22d1 
  	   Npy, Trp53i11, Nov, Ldhb, Frmd7, Dnajc15, Luzp2, Xist, Sp8, Mgll 
  	   Car4, Ndufab1, Dhx32, Prss23, Frem1, Ociad2, Vip, Golm1, Htr1f, Gabrd 
  Negative:  Mag, Camk2n1, Dbndd2, Mog, Cmtm5, Mbp, Atp1a1, Elovl1, Mal, Apod 
  	   Pou3f3, Gsn, Csrp1, Mobp, Hapln2, Cnp, Trf, Tmem88b, 2610017I09Rik, Ildr2 
  	   Car14, Tmem63a, Elovl7, Ugt8a, Ermn, Cd82, Cldn11, Pex5l, Gng12, Pcdh18 
  PC_ 5 
  Positive:  Neto1, Timp2, Pde1a, Gng2, Necab1, Cplx2, Ralyl, Gap43, Fxyd7, Reln 
  	   Tnfaip8l3, Tmem91, Mmp17, Egln3, Ramp1, Zcchc12, Qpct, Serpina3n, Ptprm, Ildr2 
  	   Spock3, E130309F12Rik, Clu, Snca, Npas3, Col25a1, Rimkla, Fabp5, Celf6, Eps8 
  Negative:  Pthlh, Ptpre, Wnt5b, Caln1, Myl1, Grpr, Hpcal1, Pygm, Clstn2, Ano4 
  	   Ptprd, Sall1, Crispld2, Penk, Gpr176, Col24a1, Tiam1, Pde8b, Cadm2, Ppargc1a 
  	   Pcdh10, Col26a1, Mybpc1, Btbd3, Vsnl1, Cbln2, Scgn, AI848285, Osbpl1a, Scn5a 
  -----------------------Embedding Statistics----------------------------- 
  Mean of Mean Correlation per Embedding: 0.8747
  95 Percent CI of Mean Correlation per Embedding: [0.8616, 0.8837]
  Mean Correlation Range: Min = 0.8605 Max = 0.8838
  ------------------------Cluster Statistics------------------------------ 
  Mean of Mean NMI per Index: 1.0000
  95 Percent CI of Mean NMI per Index: [1.0000, 1.0000]
  [ FAIL 1 | WARN 5 | SKIP 0 | PASS 5 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-clustStable.R:14:3'): Clusters were made correctly ─────────────
  <FutureInterruptError/FutureError/error/FutureCondition/condition>
  Error: Future ('future_lapply-1') of class MultisessionFuture interrupted, while running on 'localhost' (pid 19296)
  Backtrace:
      ▆
   1. └─scStability::clustStable(n_runs = 10, seurat_obj, n_cores = 8) at test-clustStable.R:14:3
   2.   └─future.apply::future_lapply(...)
   3.     └─future.apply:::future_xapply(...)
   4.       └─base::tryCatch(...)
   5.         └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   6.           └─base (local) tryCatchOne(...)
   7.             └─value[[3L]](cond)
   8.               └─future.apply:::onError(e, futures = fs, debug = debug)
  
  [ FAIL 1 | WARN 5 | SKIP 0 | PASS 5 ]
  Error:
  ! Test failures.
  Warning messages:
  1: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 4 (<-CRANWIN2.fb05.statistik.uni-dortmund.de:35207)
  2: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 14 (<-CRANWIN2.fb05.statistik.uni-dortmund.de:35207)
  Execution halted