Running ‘brfit.R’ [2s/2s]
  Running ‘lmekin1.R’ [3s/3s]
  Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK
  Running ‘lmekin2.R’ [2s/2s]
  Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK
  Running ‘nest1.R’ [2s/2s]
  Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK
  Running ‘nest2.R’ [2s/2s]
  Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK
  Running ‘refine.R’ [2s/2s]
  Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK
  Running ‘refine1.R’ [2s/2s]
  Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK
  Running ‘refine2.R’ [2s/2s]
  Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK
  Running ‘refine3.R’ [2s/2s]
  Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK
  Running ‘shrink.R’ [2s/2s]
  Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK
  Running ‘slope1.R’ [8s/9s]
  Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK
  Running ‘slope2.R’ [3s/3s]
  Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK
  Running ‘slope3.R’ [3s/3s]
  Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK
  Running ‘slope4.R’ [6s/7s]
  Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK
  Running ‘strata1.R’ [2s/2s]
  Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK
  Running ‘test0.R’ [2s/2s]
  Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK
  Running ‘test1.R’ [2s/2s]
  Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK
  Running ‘test2.R’ [2s/2s]
  Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK
  Running ‘test3.R’ [2s/2s]
  Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK
  Running ‘test4.R’ [2s/2s]
  Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK
  Running ‘twoterm.R’ [2s/2s]
  Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
Running the tests in ‘tests/brfit.R’ failed.
Complete output:
  > library(coxme)
  Loading required package: survival
  Loading required package: bdsmatrix
  
  Attaching package: 'bdsmatrix'
  
  The following object is masked from 'package:base':
  
      backsolve
  
  > options(na.action=na.omit)
  > 
  > # This data set comes from a family study, where there were doubts about
  > #  the correctness of the lmekin fit. (Courtesy M deAndrade)
  > # It's a good test of several things: there are missing values, and the
  > #  data is not in family order
  > load('brdat.rda')
  > 
  > library(kinship2)
  Error in library(kinship2) : there is no package called 'kinship2'
  Execution halted