Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘ggtree’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bingyuan Liu <adler1016@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bingyuan", "Liu/Yan", "Yuan/Qian"),
                      family = "Shi",
                      role = "aut"),
               person(given = "Bingyuan",
                      family = "Liu",
                      role = "cre",
                      email = "adler1016@gmail.com"))
as necessary.

The Description field contains
  to http://www.stat.ubc.ca/Research/TechReports/techreports/220.pdf for
Please enclose URLs in angle brackets (<...>).
'library' or 'require' call not declared from: ‘rbenchmark’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Felix Cheysson <felix@cheysson.fr>’

The Description field contains
  <arXiv:2003.04314>. Some general use functions for Hawkes processes are
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Riadh Zaatour <zaatour_riadh@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riadh",
                    family = "Zaatour",
                    role = c("aut", "cre"),
                    email = "zaatour_riadh@yahoo.fr")
as necessary.
Maintainer: ‘Denise Rava <drava@ucsd.edu>’

The Description field contains
  R. (2021) <arXiv:2112.09535>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bijan",
                    family = "Seyednasrollah",
                    role = c("aut", "cre"),
                    email = "bijan.s.nasr@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Woo-Young Ahn <wooyoung.ahn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: support will be removed soon
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
checkRd: (-1) deff.sigma.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:35: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Mike Pratte <prattems@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "S."),
                      family = "Pratte",
                      role = "aut"),
               person(given = "Mike",
                      family = "Pratte",
                      role = "cre",
                      email = "prattems@gmail.com"))
as necessary.
Package required but not available: ‘DT’

Packages suggested but not available for checking:
  'spelling', 'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alberto Lopez Moreno <bertolomo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pilar",
                      family = "Munyoz",
                      role = "aut"),
               person(given = c("Alberto", "Lopez"),
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "bertolomo@gmail.com"))
as necessary.
Package required but not available: ‘fBasics’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Tianxi Li <tianxili@umn.edu>’

The Description field contains
  <arXiv:1810.01509>. The package also includes a data generating
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'colourpicker'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘H. Battey <h.battey@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("H.", "H."),
                      family = "Hoeltgebaum",
                      role = "aut"),
               person(given = "H.",
                      family = "Battey",
                      role = "cre",
                      email = "h.battey@imperial.ac.uk"))
as necessary.
Maintainer: ‘Jie Qiao <qiaojie.chn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘gtsummary’

Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'pkgdown', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David A. Schoenfeld <dschoenfeld@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "A."),
                    family = "Schoenfeld",
                    role = c("aut", "cre"),
                    email = "dschoenfeld@mgh.harvard.edu")
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gero",
                    family = "Szepannek",
                    role = c("aut", "cre"),
                    email = "gero.szepannek@web.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Cannot process vignettes
Packages suggested but not available for checking:
  'cmdstanr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) phenowheat.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) phenowheat.Rd:19: Lost braces in \enumerate; meant \describe ?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Xin Xu <xin.xu@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanzhong",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xin",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "xin.xu@yale.edu"),
               person(given = c("Jingyi", "Jessica"),
                      family = "Li",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Natasha Stewart <natashastewart@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Okamoto",
                      role = "aut"),
               person(given = "Natasha",
                      family = "Stewart",
                      role = c("aut", "cre"),
                      email = "natashastewart@utexas.edu"),
               person(given = c("Dr.", "Jun"),
                      family = "Li",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘ftsa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bin Guo <guobinscu@scu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bin",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "guobinscu@scu.edu.cn")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'usethis', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'NPCirc', 'rgl', 'Directional'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jiehuan Sun <jiehuan.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiehuan",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "jiehuan.sun@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ran Zhao <Zhaoran@mail.sdu.edu.cn>’

The Description field contains
  al. (2023) <arXiv:2306.03317>. In this package, we also provide the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Martin Spindler <martin.spindler@gmx.de>’

The Description field contains
  (2016) <arXiv:1603.01700>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rounak Dey <deyrnk@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rounak",
                      family = "Dey",
                      role = c("aut", "cre"),
                      email = "deyrnk@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) pain.Rd:114: height/width attributes should be in pixels
Packages required but not available: 'DT', 'swfscMisc'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘C. Jason Liang <liangcj@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘finda.Rd’:
    https://doi.org/10.1111/1467-9469.00320
    https://doi.org/10.1198/016214504000000845
  File ‘hds.Rd’:
    https://doi.org/10.1111/biom.12628
  File ‘hdslc.Rd’:
    https://doi.org/10.1111/biom.12628
    https://doi.org/10.1111/1467-9469.00320
    https://doi.org/10.1198/016214504000000845
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Wei Qian <weiqian@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Qian",
                      role = c("aut", "cre"),
                      email = "weiqian@stat.umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = "aut",
                      email = "yiyang@umn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘headliner-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_headline_column
> ### Title: Add column of headlines
> ### Aliases: add_headline_column
> 
> ### ** Examples
> 
> 
> # You can use 'add_headline_column()' to reference values in an existing data set.
> # Here is an example comparing the box office sales of different Pixar films
> head(pixar_films) |>
+   dplyr::select(film, bo_domestic, bo_intl) |>
+   add_headline_column(
+     x = bo_domestic,
+     y = bo_intl,
+     headline = "{film} was ${delta}M higher {trend} (${x}M vs ${y}M)",
+     trend_phrases = trend_terms(more = "domestically", less = "internationally")
+   ) |>
+   knitr::kable("pandoc")
Error in loadNamespace(x) : there is no package called ‘knitr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Pankaj Das <pankaj.das2@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pankaj",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "pankaj.das2@icar.gov.in",
                    comment = c(ORCID = "0000-0003-1672-2502"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'bookdown', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘modeltime’

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'timetk', 'plotly'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##stable
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##experimental
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Packages required but not available: 'timetk', 'plotly'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'timetk', 'plotly', 'modeltime'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'healthyR.ai'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##stable
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Packages required but not available:
  'healthyR', 'healthyR.ts', 'healthyR.ai', 'TidyDensity',
  'RandomWalker'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kerry Atkins <atkins.kerry04@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kerry",
                    family = "Atkins",
                    role = c("aut", "cre"),
                    email = "atkins.kerry04@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘heatex-package.Rd’:
    \keyword{Heat exchange,heat transfer}
Malformed Title field: should not end in a period.
Maintainer: ‘Shilin Zhao <shilin.zhao@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shilin",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "shilin.zhao@vanderbilt.edu"),
               person(given = "Linlin",
                      family = "Yin",
                      role = "aut"),
               person(given = "Yan",
                      family = "Guo",
                      role = "aut"),
               person(given = "Quanhu",
                      family = "Sheng",
                      role = "aut"),
               person(given = "Yu",
                      family = "Shyr",
                      role = "aut"))
as necessary.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/vignette.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'plotly', 'htmlwidgets'

Packages suggested but not available for checking:
  'knitr', 'covr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.heckmange.R’
Package required but not available: ‘yaml’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'roxygen2', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'BCEA', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Raoul Wadhwa <raoulwadhwa@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Geenens and Lafaye De Micheaux (2019) <arXiv:1810.10276v4>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Meissner <retep.meissner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Meissner",
                    role = c("aut", "cre"),
                    email = "retep.meissner@gmail.com")
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Package required but not available: ‘rJava’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Juuso Parkkinen <juuso.parkkinen@iki.fi>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Marco Notaro <marco.notaro@unimi.it>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: support will be removed soon
Package required but not available: ‘rgl’

Packages suggested but not available for checking:
  'candisc', 'mvinfluence', 'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'htmlwidgets', 'knitr', 'leafpop', 'mapview', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Willem Kruijer <willem.kruijer@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Willem",
                      family = "Kruijer",
                      role = c("aut", "cre"),
                      email = "willem.kruijer@wur.nl"),
               person(given = c("with", "a", "contribution", "from", "Ian", "White.", "Contains", "data", "collected", "by", "Padraic"),
                      family = "Flood",
                      role = "aut",
                      comment = "the internal function pin"),
               person(given = "Rik",
                      family = "Kooke.",
                      role = "aut"))
as necessary.
checkRd: (-1) marker_h2.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:41-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "david.morina@uab.cat"),
               person(given = "Manuel",
                      family = "Higueras",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut"),
               person(given = "María",
                      family = "Oliveira",
                      role = "aut"))
as necessary.
checkRd: (-1) glm.hermite.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:55-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:59-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:61-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:66-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) phermite.Rd:38: Lost braces; missing escapes or markup?
    38 |   {b} and \code{m} to be lower (or greater) than \code{q}.
       |   ^
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DT'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
checkRd: (-1) hero.Rd:67-68: Lost braces
    67 | then \code{\link[pbapply]{pblapply}} is used. If code{package ==
       |                                                      ^
checkRd: (-1) hero.Rd:69: Lost braces
    69 | code{package == "Rmpi"}, then \code{\link[Rmpi]{mpi.applyLB}} is used.}
       |     ^
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Haiyan Wang <hwang@ksu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haiyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "hwang@ksu.edu"),
               person(given = "Mickael",
                      family = "Akritas",
                      role = "aut"),
               person(given = "James",
                      family = "Higgins",
                      role = "aut"),
               person(given = "Dale",
                      family = "Blasi",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Found the following HTML validation problems:
heterometa.html:263:43 (higgins.Rd:7): Warning: <script> anchor "MathJax-script" already defined
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/hetGP_vignette.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

The Description field contains
  are described in Parast et al (2022) <arXiv:2209.08315>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Julian Taylor <julian.taylor@adelaide.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Taylor",
                    role = c("aut", "cre"),
                    email = "julian.taylor@adelaide.edu.au")
as necessary.
Maintainer: ‘Ben Fifield <benfifield@gmail.com>’

The Description field contains
  <doi:10.1111/rssb.12124> <arXiv:1412.5000>, and Ding, Feller, and
  Miratrix (2018) <doi:10.1080/01621459.2017.1407322> <arXiv:1605.06566>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'ggExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'processmapR', 'DiagrammeR', 'petrinetR'

Package suggested but not available for checking: ‘svgPanZoom’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘ggimage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristian Yones <cyones@sinc.unl.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cristian",
                    family = "Yones",
                    role = c("aut", "cre"),
                    email = "cyones@sinc.unl.edu.ar")
as necessary.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz",
                    comment = "Jie Fu Yu made a prototype")
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Maintainer: ‘Johann Pfitzinger <johann.pfitzinger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johann",
                    family = "Pfitzinger",
                    role = c("aut", "cre"),
                    email = "johann.pfitzinger@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Xia Shen <xia.shen@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xia",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "xia.shen@ki.se"),
               person(given = "Moudud",
                      family = "Alam",
                      role = "aut"),
               person(given = "Lars",
                      family = "Ronnegard",
                      role = "aut"))
as necessary.
checkRd: (-1) ohio.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) ohio.Rd:105: Escaped LaTeX specials: \&
Maintainer: ‘Xia Shen <xia.shen@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Moudud",
                      family = "Alam",
                      role = "aut"),
               person(given = "Lars",
                      family = "Ronnegard",
                      role = "aut"),
               person(given = "Xia",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "xia.shen@ki.se"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nobuki Takayama <takayama@math.kobe-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nobuki",
                      family = "Takayama",
                      role = c("aut", "cre"),
                      email = "takayama@math.kobe-u.ac.jp"),
               person(given = "Tamio",
                      family = "Koyama",
                      role = "aut"),
               person(given = "Tomonari",
                      family = "Sei",
                      role = "aut"),
               person(given = "Hiromasa",
                      family = "Nakayama",
                      role = "aut"),
               person(given = "Kenta",
                      family = "Nishiyama",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jinan Pang <pang.jinan@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "JinanPang",
                      role = c("aut", "cre")),
               person(family = "HuiLi",
                      role = "ctb"),
               person(given = "Jinan",
                      family = "Pang",
                      role = "cre",
                      email = "pang.jinan@qq.com"))
as necessary.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yongjian Kang <yongjiak@usc.edu>’

The Description field contains
  (2018)<arXiv:1606.03803>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Philip D. Waggoner <pdwaggoner@wm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "pdwaggoner@wm.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking:
  'Rcmdr', 'RcmdrPlugin.HH', 'microplot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown', 'roxygen2', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene', 'GenomicFeatures'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘diffHic’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jason A. Osborne <jaosborn@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jason", "A."),
                      family = "Osborne",
                      role = c("aut", "cre"),
                      email = "jaosborn@ncsu.edu"),
               person(given = c("Christopher", "T."),
                      family = "Franck",
                      role = "aut"),
               person(given = "Bongseog",
                      family = "Choi",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_threshold.R’ ‘compute_chromosomes_length.R’
    ‘create_hidecan_plot.R’ ‘gwaspoly_helper_functions.R’
    ‘input_data_constructors.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Thomas Lin Pedersen <thomasp85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "Lin"),
                    family = "Pedersen",
                    role = c("aut", "cre"),
                    email = "thomasp85@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) read.VCF.Rd:21: Lost braces
    21 | Reads a \url{https://samtools.github.io/hts-specs/}{Variant Call Format (VCF)} file into a BED object,
       |                                                    ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
checkRd: (-1) hierNet.Rd:28: Lost braces; missing escapes or markup?
    28 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |               ^
checkRd: (-1) hierNet.logistic.Rd:30: Lost braces; missing escapes or markup?
    30 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}  
       |               ^
checkRd: (-1) hierNet.logistic.Rd:63: Lost braces
    63 | \seealso{\link{predict.hierNet.logistic},link{hierNet.logistic.path}}
       |                                              ^
checkRd: (-1) hierNet.logistic.path.Rd:39: Lost braces; missing escapes or markup?
    39 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
checkRd: (-1) hierNet.path.Rd:38: Lost braces; missing escapes or markup?
    38 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
Package required but not available: ‘rlist’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'rlist', 'yaml'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Huaiyu Zhang <huaiyuzhang1988@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huaiyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "huaiyuzhang1988@gmail.com"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brandon LeBeau <lebebr01+highlightHTML@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'quanteda', 'quanteda.textstats'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lifeng Lin <linl@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lifeng",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "linl@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Atanu Bhattacharjee <atanustat@gmail.com>’

The Description field contains
  <arXiv:2012.02102>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:2008.00863>.  X. Wang, R. Zhou, J. Ying, and D. P. Palomar
  Parametric Skew-t Distribution." <arXiv:2206.02412>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Maintainer: ‘Rickmer Schulte <R.Schulte@campus.lmu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Heidi",
                      family = "Seibold",
                      role = "aut",
                      email = "Heidi.Seibold@uzh.ch"),
               person(given = "Monia",
                      family = "Mahling",
                      role = "aut",
                      email = "monia.mahling@stat.uni-muenchen.de"),
               person(given = "Sebastian",
                      family = "Linne",
                      role = "aut",
                      email = "Sebastian.Linne@campus.lmu.de"),
               person(given = "Felix",
                      family = "Guenther",
                      role = "aut",
                      email = "felix.guenther@stat.uni-muenchen.de"),
               person(given = "Rickmer",
                      family = "Schulte",
                      role = "cre",
                      email = "R.Schulte@campus.lmu.de"))
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexander Rix <alexrix@umich.edu>’

The Description field contains
  (HiGLASSO), developed by Boss et al (2020) <arXiv:2003.12844>, is a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yuancheng Zhu <yuancheng.zhu@gmail.com>’

The Description field contains
  <arXiv:1802.04876> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Daijiang Li <daijianglee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daijiang",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "daijianglee@gmail.com")
as necessary.
Package required but not available: ‘rayshader’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexander Tekles <alexander.tekles@soziologie.uni-muenchen.de>’

The Description field contains
  described in more detail in Bornmann et al. (2019) <arXiv:1905.11052>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alex T. Kalinka <alex.t.kalinka@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "T."),
                    family = "Kalinka",
                    role = c("aut", "cre"),
                    email = "alex.t.kalinka@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  numbers of balls belonging to the same n categories. <arXiv:1305.0717>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  http://github.com/xiangzhou09/hIRT
which should likely be
  http://github.com/xiangzhou09/hIRT/issues
instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘hgrm.Rd’:
    https://doi.org/10.1017/pan.2018.63
  File ‘hltm.Rd’:
    https://doi.org/10.1017/pan.2018.63
Package required but not available: ‘rms’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'heplots', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Michael Milton <michael.r.milton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Milton",
                    role = c("aut", "cre"),
                    email = "michael.r.milton@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jouke Witteveen <j.witteveen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jouke",
                    family = "Witteveen",
                    role = c("aut", "cre"),
                    email = "j.witteveen@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rJava’

Package which this enhances but not available for checking: ‘HadoopStreaming’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DT', 'plotly'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lai Jiang <jian848@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lai",
                    family = "Jiang",
                    role = c("aut", "cre"),
                    email = "jian848@usc.edu")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘get_cond_alpha.Rd’:
    https://doi.org/10.1101/2020.02.03.924241
  File ‘hJAM_egger.Rd’:
    https://doi.org/10.1101/2020.02.03.924241
  File ‘hJAM_lnreg.Rd’:
    https://doi.org/10.1101/2020.02.03.924241
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'devtools', 'tidyverse'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘usethis’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'vcr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) hlt.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:77-78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Samuel Thomas <samthoma@iu.edu>’

The Description field contains
  Monte Carlo" <arXiv:1701.02434>, Thomas, S., Tu, W. (2020) "Learning
  Hamiltonian Monte Carlo in R" <arXiv:2006.16194>, Gelman, A., Carlin,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'mixtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'htmlTable', 'rmarkdown', 'knitr'

Packages suggested but not available for checking:
  'qreport', 'rms', 'tables', 'plotly', 'kableExtra', 'gt',
  'sparkline', 'htmlwidgets', 'keyring'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.
checkRd: (-1) nafracCalc.Rd:45: Lost braces
    45 |   as if code{y} were not of class \code{"multipleHmmDataSets"}.
       |             ^
Maintainer: ‘Jiwoong Kim <jwboys26@gmail.com>’

The Description field contains
  inverse. See Kim (2017) <arXiv:1710.09663> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: support will be removed soon
Maintainer: ‘Ting Wang <ting.wang@otago.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ting",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "ting.wang@otago.ac.nz"),
               person(given = "Wolfgang",
                      family = "Hayek",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Pletzer",
                      role = "aut"))
as necessary.
Maintainer: ‘Chu-Lan Michael Kao <chulankao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Chen",
                      role = "aut"),
               person(given = "Cheng-Der",
                      family = "Fuh",
                      role = "aut"),
               person(given = "Chu-Lan",
                      family = "Kao",
                      role = "aut"),
               person(given = c("S.", "C."),
                      family = "Kou.",
                      role = "aut"),
               person(given = c("Chu-Lan", "Michael"),
                      family = "Kao",
                      role = "cre",
                      email = "chulankao@gmail.com"))
as necessary.
Specified C++11: support will be removed soon
Maintainer: ‘Ingmar Visser <i.visser@uva.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Berkley Shands <rpackages@biorankings.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patricio", "S."),
                      family = "La Rosa",
                      role = "aut"),
               person(given = "Elena",
                      family = "Deych",
                      role = "aut"),
               person(given = "Sharina",
                      family = "Carter",
                      role = "aut"),
               person(given = "Berkley",
                      family = "Shands",
                      role = c("aut", "cre"),
                      email = "rpackages@biorankings.com"),
               person(given = "Dake",
                      family = "Yang",
                      role = "aut"),
               person(given = c("William", "D."),
                      family = "Shannon",
                      role = "aut"))
as necessary.
Maintainer: ‘Berkley Shands <rpackages@biorankings.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patricio", "S."),
                      family = "La Rosa",
                      role = "aut"),
               person(given = "Elena",
                      family = "Deych",
                      role = "aut"),
               person(given = "Berkley",
                      family = "Shands",
                      role = c("aut", "cre"),
                      email = "rpackages@biorankings.com"),
               person(given = c("William", "D."),
                      family = "Shannon",
                      role = "aut"))
as necessary.
Maintainer: ‘Asger R. Pedersen <arpstat@outlook.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Asger", "R."),
                    family = "Pedersen",
                    role = c("aut", "cre"),
                    email = "arpstat@outlook.dk")
as necessary.
checkRd: (-1) HMR.Rd:171: height/width attributes should be in pixels
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'pkgdown', 'plotly', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘theme_hmsid.Rd’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolas",
                    family = "Sauwen",
                    role = c("aut", "cre"),
                    email = "nicolas.sauwen@openanalytics.eu")
as necessary.
Packages required but not available: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) HOasso.Rd:43: Lost braces; missing escapes or markup?
    43 | Arguments \code{x} and {y} are \code{character} objects and can assume values   \code{"sout"}, \code{"dout"}, \code{"lout"}, \code{"sin"}, \code{"din"}, \code{"lin"} representing the out-strength, out-degree, out-log-strength, in-strength, in-degree, and in-log-strength respectively.
       |                        ^
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'spelling', 'quarto'

VignetteBuilder package required for checking but not installed: ‘quarto’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'DiagrammeR'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'config', 'DT', 'golem', 'shinybusy', 'tippy', 'visNetwork',
  'mixOmics'

Packages suggested but not available for checking:
  'bookdown', 'knitr', 'rmarkdown', 'badger'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lawrence Hudson <quicklizard@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lawrence",
                    family = "Hudson",
                    role = c("aut", "cre"),
                    email = "quicklizard@googlemail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘usethis’

Packages suggested but not available for checking: 'rmarkdown', 'yaml'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'usethis', 'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Maintainer: ‘Kevin Wright <kw.stat@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/kwstat/hopkins/
which should likely be
  https://github.com/kwstat/hopkins/issues
instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DT', 'golem'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) hd.ord.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'FactoMineR', 'rgl'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Csaba Farago <farago@inf.u-szeged.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Csaba",
                    family = "Farago",
                    role = c("aut", "cre"),
                    email = "farago@inf.u-szeged.hu")
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ryan Hafen <rhafen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ryan",
                    family = "Hafen",
                    role = c("aut", "cre"),
                    email = "rhafen@gmail.com")
as necessary.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'shinytest2'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(howzatR)
  > 
  > test_check("howzatR")
  Saving _problems/test-batting_basics-7.R
  Saving _problems/test-batting_basics-22.R
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 16 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-batting_basics.R:7:3'): bat_avg works ──────────────────────────
  Error in `expect(bat_avg(runs_scored = 50, no_dismissals = 2), 25)`: `ok` must be `TRUE` or `FALSE`, not the number 25.
  Backtrace:
      ▆
   1. └─testthat::expect(ok = bat_avg(runs_scored = 50, no_dismissals = 2)) at test-batting_basics.R:7:3
   2.   └─testthat:::check_bool(ok)
   3.     └─testthat:::stop_input_type(...)
   4.       └─rlang::abort(message, ..., call = call, arg = arg)
  ── Error ('test-batting_basics.R:22:3'): bat_sr works ──────────────────────────
  Error in `expect(bat_sr(runs_scored = 250, balls_faced = 200), 125)`: `ok` must be `TRUE` or `FALSE`, not the number 125.
  Backtrace:
      ▆
   1. └─testthat::expect(ok = bat_sr(runs_scored = 250, balls_faced = 200)) at test-batting_basics.R:22:3
   2.   └─testthat:::check_bool(ok)
   3.     └─testthat:::stop_input_type(...)
   4.       └─rlang::abort(message, ..., call = call, arg = arg)
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 16 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'colourpicker'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Potanin Bogdan <bogdanpotanin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Potanin",
                    family = "Bogdan",
                    role = c("aut", "cre"),
                    email = "bogdanpotanin@gmail.com")
as necessary.
Maintainer: ‘Alexandru Monahov <alexandru.monahov@proton.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandru",
                    family = "Monahov",
                    role = c("aut", "cre"),
                    email = "alexandru.monahov@proton.me")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'covr', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Loris Michel <michel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Loris",
                      family = "Michel",
                      role = c("aut", "cre"),
                      email = "michel@stat.math.ethz.ch"),
               person(given = "Jeffrey",
                      family = "Naef",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.06006>. An estimated lower-bound (with high-probability) on
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) HPLB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:38: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘keyring’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pec', 'timeROC'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniel Antiporta <dantiporta@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "Antiporta;", "Matthew", "Matheson", "<mmathes4@jhu.edu>;", "Derek", "Ng", "<dng@jhu.edu>;", "Alvaro", "Munoz"),
                      family = "<amunoz@jhu.edu>",
                      role = "aut",
                      email = "amunoz@jhu.edu"),
               person(given = "Daniel",
                      family = "Antiporta",
                      role = "cre",
                      email = "dantiporta@jhu.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘ciftiTools’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'library' or 'require' calls not declared from:
  ‘Ecdat’ ‘LowRankQP’ ‘VGAM’ ‘e1071’ ‘fda’ ‘fda.usc’ ‘mlbench’ ‘nlme’
  ‘quantreg’ ‘refund’ ‘rgl’ ‘rstan’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rlist’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Giacomo Ceoldo <giacomo.ceoldo@usi.ch>’

The Description field contains
  <arXiv:2304.09809>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘rlist’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rgl’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Longhai Li <longhai@math.usask.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Computation and Simulation, 88:14, 2827-2851, <arXiv:1405.3319>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sangchul Park <mail@sangchul.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sangchul",
                    family = "Park",
                    role = c("aut", "cre"),
                    email = "mail@sangchul.com")
as necessary.
Package required but not available: ‘shinyjqui’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'knitr', 'htmlwidgets'

Packages suggested but not available for checking: 'Hmisc', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘"Markus Loecher, Berlin School of Economics and Law (BSEL)" <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = c("Berlin", "School", "of"),
                      family = "Economics",
                      role = "aut"),
               person(family = "Law\"",
                      role = "aut",
                      email = "markus.loecher@gmail.com",
                      comment = "BSEL"))
as necessary.
Packages required but not available: 'knitr', 'rmarkdown', 'yaml'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Andrea Rau <andrea.rau@jouy.inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrea",
                      family = "Rau",
                      role = c("aut", "cre"),
                      email = "andrea.rau@jouy.inra.fr"),
               person(given = "Gilles",
                      family = "Celeux",
                      role = "aut"),
               person(given = "Marie-Laure",
                      family = "Martin-Magniette",
                      role = "aut"),
               person(given = c("Cathy", "Maugis-"),
                      family = "Rabusseau",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'editData'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) calc_mc_css.Rd:181: height/width attributes should be in pixels
checkRd: (-1) calc_mc_oral_equiv.Rd:153: height/width attributes should be in pixels
checkRd: (-1) solve_1comp.Rd:155-156: height/width attributes should be in pixels
checkRd: (-1) solve_1comp_lifestage.Rd:164-165: height/width attributes should be in pixels
checkRd: (-1) solve_3comp.Rd:184-185: height/width attributes should be in pixels
checkRd: (-1) solve_3comp2.Rd:188-189: height/width attributes should be in pixels
checkRd: (-1) solve_3comp_lifestage.Rd:195-196: height/width attributes should be in pixels
checkRd: (-1) solve_gas_pbtk.Rd:250-251: height/width attributes should be in pixels
checkRd: (-1) solve_pbtk.Rd:180-181: height/width attributes should be in pixels
checkRd: (-1) solve_pbtk_lifestage.Rd:195-196: height/width attributes should be in pixels
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = identical(Sys.getenv("TRAVIS"), "true"))
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Andreas Westfeld <andreas.westfeld@htw-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eryk", "Witold"),
                      family = "Wolski",
                      role = "aut"),
               person(given = "Andreas",
                      family = "Westfeld",
                      role = c("aut", "cre"),
                      email = "andreas.westfeld@htw-dresden.de"))
as necessary.
checkRd: (-1) simplePostToHost.Rd:14: Escaped LaTeX specials: \&
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(
  +   vignettes = TRUE,
  +   error = nzchar(Sys.getenv("GITHUB_WORKSPACE"))
  + )
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [9s/12s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(
  +   vignettes = TRUE,
  +   error = identical(Sys.getenv("CI"), "true")
  + )
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
'::' or ':::' import not declared from: ‘rstudioapi’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'Hmisc', 'knitr', 'leafpop', 'mapview', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Paul Richardson <p.richardson.54391@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Richardson",
                    role = c("aut", "cre"),
                    email = "p.richardson.54391@gmail.com")
as necessary.
Maintainer: ‘Haoming Jiang <jianghm.ustc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haoming",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "jianghm.ustc@gmail.com"),
               person(given = "Xinyu",
                      family = "Fei",
                      role = "aut"),
               person(given = "Han",
                      family = "Liu",
                      role = "aut"),
               person(given = "Kathryn",
                      family = "Roeder",
                      role = "aut"),
               person(given = "John",
                      family = "Lafferty",
                      role = "aut"),
               person(given = "Larry",
                      family = "Wasserman",
                      role = "aut"),
               person(given = "Xingguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Tuo",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Specified C++11: support will be removed soon
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'quarto', 'inti'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'quarto'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Dustin Sallings <dustin@spy.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dustin",
                    family = "Sallings",
                    role = c("aut", "cre"),
                    email = "dustin@spy.net")
as necessary.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

The Description field contains
  (https://github.com/ chovy/humanparser) provides functions for parsing
Please enclose URLs in angle brackets (<...>).
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(humanize)
  > 
  > test_check("humanize")
  Saving _problems/test_time-150.R
  Saving _problems/test_time-219.R
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 96 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_time.R:145:3'): natural_time works as expected ─────────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  ℹ Please use `with_mocked_bindings()` instead.
  Backtrace:
      ▆
   1. └─testthat::with_mock(...) at test_time.R:145:3
   2.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
   3.     └─lifecycle:::deprecate_stop0(msg)
   4.       └─rlang::cnd_signal(...)
  ── Error ('test_time.R:214:3'): natural_time no months works as expected ───────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  ℹ Please use `with_mocked_bindings()` instead.
  Backtrace:
      ▆
   1. └─testthat::with_mock(...) at test_time.R:214:3
   2.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
   3.     └─lifecycle:::deprecate_stop0(msg)
   4.       └─rlang::cnd_signal(...)
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 96 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Jun Cai <cai-j12@mails.tsinghua.edu.cn>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Natalia Novoselova <novos65@mail.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalia", "Novoselova,Junxi", "Wang,Jialiang"),
                      family = "Li",
                      role = "aut"),
               person(given = c("Frank", "Pessler,Frank"),
                      family = "Klawonn",
                      role = "aut"),
               person(given = "Natalia",
                      family = "Novoselova",
                      role = "cre",
                      email = "novos65@mail.ru"))
as necessary.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'spelling', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'hurricaneexposuredata', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'Hmisc', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'bookdown', 'covr', 'devtools', 'flextable', 'ftExtra', 'knitr',
  'lintr', 'quarto', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘huxtable-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hux_logo
> ### Title: Huxtable logo
> ### Aliases: hux_logo
> 
> ### ** Examples
> 
> # Default logo
> print_screen(hux_logo())
Error in assert_package("guess_knitr_output_format", "knitr") : 
  `guess_knitr_output_format` requires the "knitr" package. To install, type:
install.packages("knitr")
Calls: print_screen ... hux_logo -> guess_knitr_output_format -> assert_package
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotly', 'DT', 'Hmisc', 'htmlwidgets',
  'skimr', 'devtools', 'tidyverse', 'DataExplorer', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘HVT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clustHVT
> ### Title: Performing Hierarchical Clustering Analysis
> ### Aliases: clustHVT
> ### Keywords: Clustering_Analysis
> 
> ### ** Examples
> 
> data("EuStockMarkets")
> dataset <- data.frame(t = as.numeric(time(EuStockMarkets)),
+                      DAX = EuStockMarkets[, "DAX"],
+                      SMI = EuStockMarkets[, "SMI"],
+                      CAC = EuStockMarkets[, "CAC"],
+                      FTSE = EuStockMarkets[, "FTSE"])
> rownames(EuStockMarkets) <- dataset$t
> hvt.results<- trainHVT(dataset[-1],n_cells = 30, depth = 1, quant.err = 0.1,
+                       distance_metric = "L1_Norm", error_metric = "max",
+                       normalize = TRUE,quant_method = "kmeans")
Loading required namespace: deldir
Loading required namespace: Hmisc
Failed with error:  ‘there is no package called ‘Hmisc’’
Loading required namespace: splancs
Loading required namespace: conf.design
Loading required namespace: Rtsne
Loading required namespace: umap
Loading required namespace: FNN
Loading required namespace: MASS
Initial stress        : 0.00032
stress after  10 iters: 0.00014, magic = 0.500
stress after  20 iters: 0.00014, magic = 0.500
> scoring <- scoreHVT(dataset, hvt.results, analysis.plots = TRUE, names.column = dataset[,1])
Loading required namespace: data.table
Scale for colour is already present.
Adding another scale for colour, which will replace the existing scale.
Scale for x is already present.
Adding another scale for x, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Error in loadNamespace(x) : there is no package called ‘plotly’
Calls: scoreHVT
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘John Maindonald <jhmaindonald@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Maindonald",
                      role = c("aut", "cre"),
                      email = "jhmaindonald@gmail.com"),
               person(given = c("with", "\\code{hwexact}", "from", "Randall"),
                      family = "Johnson.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sergio Venturini <sergio.venturini@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "sergio.venturini@unicatt.it")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'htmlwidgets', 'wordcloud2', 'colourpicker'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gregoire Pau <gregoire.pau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gregoire",
                    family = "Pau",
                    role = c("aut", "cre"),
                    email = "gregoire.pau@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rgl’

Package suggested but not available for checking: ‘microViz’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matthew Cserhati <csmatyi@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Cserhati",
                    role = c("aut", "cre"),
                    email = "csmatyi@protonmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'pkgdown', 'roxygen2', 'revealjs',
  'shiny.i18n', 'usethis', 'yaml'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'pkgdown', 'roxygen2',
  'shiny.i18n', 'leaflet', 'leaflet.extras', 'leaflet.esri'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Martin Keller-Ressel <martin.keller-ressel@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Keller-Ressel",
                    role = c("aut", "cre"),
                    email = "martin.keller-ressel@tu-dresden.de")
as necessary.

The Description field contains
  <arXiv:1903.08977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Myles English <myles@rockhead.biz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Myles",
                    family = "English",
                    role = c("aut", "cre"),
                    email = "myles@rockhead.biz")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'mapview'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Bettina Grün <Bettina.Gruen@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘ggpmisc’

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nick Bond <n.bond@latrobe.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Bond",
                    role = c("aut", "cre"),
                    email = "n.bond@latrobe.edu.au")
as necessary.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) extractPeriod.Rd:57: Lost braces
    57 | NOTE: all the dates in the datalist should follow the format in ?as.Date{base}.
       |                                                                         ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'rticles', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Scott",
                    role = c("aut", "cre"),
                    email = "d.scott@auckland.ac.nz")
as necessary.
Maintainer: ‘Michael Scholz <michael.scholz@th-deg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Scholz",
                    role = c("aut", "cre"),
                    email = "michael.scholz@th-deg.de")
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

Packages suggested but not available for checking:
  'knitr', 'quarto', 'rmarkdown', 'groupedHyperframe', 'htmlwidgets'

VignetteBuilder packages required for checking but not installed:
  'quarto', 'knitr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David J. Marchette <dmarchette@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J."),
                    family = "Marchette",
                    role = c("aut", "cre"),
                    email = "dmarchette@gmail.com")
as necessary.
Packages required but not available: 'matlib', 'rgl'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'rgl', 'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rgl', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'DT', 'htmlwidgets', 'leaflet',
  'leaflet.extras', 'mapview', 'plotly'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pkgdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘equations.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘"Stefan Rass, on behalf of the Austrian Institute of Technology" <stefan.rass@jku.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Rass",
                      role = "aut"),
               person(given = "Sandra",
                      family = "Koenig",
                      role = "aut"),
               person(given = "Ali",
                      family = "Alshawish",
                      role = "aut"),
               person(given = "\"Stefan",
                      family = "Rass",
                      role = "cre"),
               person(given = c("on", "behalf", "of", "the", "Austrian", "Institute", "of"),
                      family = "Technology\"",
                      role = "cre",
                      email = "stefan.rass@jku.at"))
as necessary.
Maintainer: ‘Spencer Maynes <smaynes89@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Maynes",
                      role = c("aut", "cre"),
                      email = "smaynes89@gmail.com"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"),
               person(given = "Anne",
                      family = "Parkhurst",
                      role = "aut"))
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘John Lawson <lawsonjsl7net@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lawson",
                    role = c("aut", "cre"),
                    email = "lawsonjsl7net@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘JuliaCall’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ran Zhao <Zhaoran@mail.sdu.edu.cn>’

The Description field contains
  in He et al. (2023) <arXiv:2301.00360>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Satoshi Takahashi <takahasi@lisboa.ics.nara-wu.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Satoshi",
                    family = "Takahashi",
                    role = c("aut", "cre"),
                    email = "takahasi@lisboa.ics.nara-wu.ac.jp")
as necessary.
Maintainer: ‘Dan Martin <dpmartin42@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Martin",
                    role = c("aut", "cre"),
                    email = "dpmartin42@gmail.com")
as necessary.
checkRd: (-1) IATData.Rd:24: Lost braces; missing escapes or markup?
    24 | Dan Martin {dpmartin42@gmail.com}
       |            ^
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shengbin Ye <sy53@rice.edu>’

The Description field contains
  <arXiv:2110.10195>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘bartMachine’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'forrel', 'ibdsim2', 'pedtools', 'ribd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Taehyeon Koo <tk587@stat.rutgers.edu>’

The Description field contains
  (2024) <arXiv:2405.19312>, it includes block-level estimators and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘pedtools’

Package suggested but not available for checking: ‘ribd’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'pedtools', 'ribd'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kuang Zhou <kzhoumath@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kuang", "Zhou;", "Arnaud", "Martin"),
                      family = "<arnaud.martin@univ-rennes1.fr>",
                      role = "aut",
                      email = "arnaud.martin@univ-rennes1.fr"),
               person(given = "Kuang",
                      family = "Zhou",
                      role = "cre",
                      email = "kzhoumath@163.com"))
as necessary.

The Description field contains
  Philippe Smets <arXiv:1304.1122>, evidence combination, evidence
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘ggExtra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'knitr', 'SparkR'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/ibmdbR.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  article (Gosiewska and Biecek 2019) <arXiv:1903.11420> This package is
  a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'r2d3', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) setServerLogLevel.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:24: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.
Maintainer: ‘Cyprien Mbogning <cyprien.mbogning@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cyprien",
                      family = "Mbogning",
                      role = c("aut", "cre"),
                      email = "cyprien.mbogning@gmail.com"),
               person(given = "Philippe",
                      family = "Broet",
                      role = "aut"))
as necessary.
Maintainer: ‘Oscar M. Rueda <Oscar.Rueda@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Oscar", "M"),
                      family = "Rueda",
                      role = "aut"),
               person(given = c("Jose", "Antonio", "Seoane"),
                      family = "Fernandez",
                      role = "aut"),
               person(given = c("Oscar", "M."),
                      family = "Rueda",
                      role = "cre",
                      email = "Oscar.Rueda@mrc-bsu.cam.ac.uk"))
as necessary.
Maintainer: ‘Daliang Ning <ningdaliang@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daliang",
                    family = "Ning",
                    role = c("aut", "cre"),
                    email = "ningdaliang@ou.edu")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘BSgenome’

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.1000genomes.hs37d5',
  'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Package required but not available: ‘leaflet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jacob R. Bradley <cobrbradley@gmail.com>’

The Description field contains
  and Cannings (2021) <arXiv:2102.04296>. This package allows the user to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                     ^
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                                  ^
Maintainer: ‘Daniel Nevo <danielnevo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Nevo",
                    role = c("aut", "cre"),
                    email = "danielnevo@gmail.com")
as necessary.

The Description field contains
  proportional hazard model, Nevo et al. (2018+) <arXiv:1801.01529>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Steven Andrew Culpepper <sculpepp@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: support will be removed soon
Maintainer: ‘Josep L. Carrasco <jlcarrasco@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Josep", "L."),
                    family = "Carrasco",
                    role = c("aut", "cre"),
                    email = "jlcarrasco@ub.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Weichi Yao <wy635@stern.nyu.edu>’

The Description field contains
  <arXiv:1901.04599>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Matthew Wolak <matthewwolak@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alasdair Rathbone <alasdair.rathbone@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alasdair",
                      family = "Rathbone",
                      role = c("aut", "cre"),
                      email = "alasdair.rathbone@gmail.com"),
               person(given = "Saurabh",
                      family = "Shaw",
                      role = "aut"),
               person(given = "Dinesh",
                      family = "Kumbhare",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘icd_lookup.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lorenz",
                      family = "Brachtendorf",
                      role = "aut",
                      email = "Lorenz.Brachtendorf@gmx.de"),
               person(given = "Stephan",
                      family = "Dlugosz",
                      role = c("aut", "cre"),
                      email = "stephan.dlugosz@googlemail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Goldstein",
                      role = "aut"),
               person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Justin",
                      family = "Bleich",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sam Parsons <sam.parsons@radboudumc.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/sdparsons/ICED
which should likely be
  https://github.com/sdparsons/ICED/issues
instead.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bob Obenchain <wizbob@att.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bob",
                    family = "Obenchain",
                    role = c("aut", "cre"),
                    email = "wizbob@att.net")
as necessary.
checkRd: (-1) ICEscale.Rd:53: Escaped LaTeX specials: \^
checkRd: (-1) dpwdg.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) dpwdg.Rd:15: Escaped LaTeX specials: \$
Packages required but not available:
  'plotly', 'knitr', 'Hmisc', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Clifford Anderson-Bergman <pistacliffcho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Clifford",
                    family = "Anderson-Bergman",
                    role = c("aut", "cre"),
                    email = "pistacliffcho@gmail.com")
as necessary.
Maintainer: ‘Xiangdong Gu <ustcgxd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangdong",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "ustcgxd@gmail.com"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Packages required but not available: 'DT', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) Bpa.Rd:39-40: Lost braces
    39 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) Fpa.Rd:42-43: Lost braces
    42 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) icesRound.Rd:64-65: Lost braces
    64 | \doi{10.17895/ices.pub.3038}{\emph{ICES Advice Technical
       |                             ^
checkRd: (-1) mohn.Rd:71-72: Lost braces
    71 | \doi{10.17895/ices.pub.5997}{\emph{ICES Scientific Reports
       |                             ^
Packages required but not available:
  'leaflet', 'leafgl', 'leaflet.extras', 'leafsync'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'DT', 'mapview', 'plotly'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ICGOR-package.Rd’:
    \keyword{ package, generalized odds rate hazards m [TRUNCATED]
Cannot process vignettes
Packages suggested but not available for checking:
  'keyring', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ulrike Groemping <ulrike.groemping@bht-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ulrike",
                    family = "Groemping",
                    role = c("aut", "cre"),
                    email = "ulrike.groemping@bht-berlin.de")
as necessary.
Packages required but not available: 'fPortfolio', 'coefplot', 'fBasics'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'survminer'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'profvis', 'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rgl'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'lemon', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Diaa Al Mohamad <diaa.almohamad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Diaa", "Al"),
                      family = "Mohamad",
                      role = c("aut", "cre"),
                      email = "diaa.almohamad@gmail.com"),
               person(given = c("Erik", "W."),
                      family = "van Zwet",
                      role = "aut"),
               person(given = c("Jelle", "J."),
                      family = "Goeman",
                      role = "aut"))
as necessary.
Specified C++11: support will be removed soon
checkRd: (-1) ic.ranks.Rd:46: Lost braces; missing escapes or markup?
    46 | \item{n_adjust}{an integer-valued entry for advanced control over the lower- or upper-bound algorithms. When the "adjustL" parameter is TRUE, the new value of n_adjust is chosen automatically as the best adjustment on the lower affine bound of the chi-square quantiles according to the data. If adjustU is TRUE, then n_adjust contains the point at which the upper affine bound is tangent on the chi-square quantiles. Possible values {1,...,n-1}. If both adjustL and adjustU variables are left FALSE, then the default choice is that the lower affine bound passes between the chi-square quantiles at 1 and n-1 degrees of freedom, and the upper affine bound is tangent on n-1.}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
Maintainer: ‘Hui Xu <huix@schoolph.umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "huix@schoolph.umass.edu"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Package required but not available: ‘heplots’

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Running examples in ‘ICSOutlier-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ICS_outlier
> ### Title: Outlier Detection Using ICS
> ### Aliases: ICS_outlier
> 
> ### ** Examples
> 
> # ReliabilityData example: the observations 414 and 512 are suspected to be outliers  
> library(REPPlab)
Error in library(REPPlab) : there is no package called ‘REPPlab’
Execution halted
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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checkRd: (-1) data.Rd:7: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:9: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Lianming Wang <wangl@stat.sc.edu>’

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                      role = c("aut", "cre"),
                      email = "wangl@stat.sc.edu"))
as necessary.
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Maintainer: ‘Olga Savchuk <olga.y.savchuk@gmail.com>’

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                      role = "aut"))
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Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(IDEAFilter)
  > library(shinytest)
  Error in library(shinytest) : there is no package called 'shinytest'
  Execution halted
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'library' or 'require' calls not declared from:
  ‘MASS’ ‘flowStats’ ‘hyperSpec’
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Files named as vignettes but with no recognized vignette engine:
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                    family = "Hino",
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                    email = "hideitsu.hino@gmail.com")
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                      family = "Ha",
                      role = "aut",
                      email = "mjha@mdanderson.org"))
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VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘idmc_transform_daily.R’
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                      role = "ctb"))
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Found the following (possibly) invalid file URI:
  URI: gfycat.com
    From: man/adjective_animal.Rd
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Package required but not available: ‘haplo.stats’

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Found the following assignments to the global environment:
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Found the following (possibly) invalid file URI:
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    From: inst/README.md
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                    email = "seanjw@stanford.edu")
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Malformed Description field: should contain one or more complete sentences.
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VignetteBuilder package required for checking but not installed: ‘knitr’
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                      family = "Wang",
                      role = "aut"),
               person(given = "Xiaowei",
                      family = "Zhan",
                      role = "aut"))
as necessary.
Maintainer: ‘Nitesh Kumar Sharma <sharmanitesh.iasri@gmail.com>’

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               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"),
               person(given = "Neeraj",
                      family = "Budhlakoti",
                      role = "aut"),
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                      family = "Farooqi",
                      role = "aut"))
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Package required but not available: ‘factoextra’

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VignetteBuilder package required for checking but not installed: ‘knitr’

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Package CITATION file contains call(s) to old-style personList() or
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Package CITATION file contains call(s) to old-style citEntry().  Please
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Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

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                    email = "feng.chen@unsw.edu.au")
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Package CITATION file contains call(s) to old-style citEntry().  Please
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checkRd: (-1) simHawkes1a.Rd:35: Lost braces; missing escapes or markup?
    35 | distribution; 'd${dis}' gives the density function \eqn{g(\cdot)}.}
       |                  ^
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                    family = "Liao",
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                    email = "tfliao@illinois.edu")
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manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'EBImage', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘fda.usc’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘"Christopher, E. Maerzluft" <cmaerzlu@rand.org>’

The Description field contains
  <arXiv:1804.02090>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) define_target_function.Rd:41: Lost braces; missing escapes or markup?
    41 | be done either as a single vector of values (e.g. `function(x) { ... }`), or individual inputs for each parameter
       |                                                                ^
checkRd: (-1) define_target_function.Rd:42: Lost braces; missing escapes or markup?
    42 | (e.g. `function(x1, x2) { ... }`). If a single vector is used, all parameters will be passed to the target function as
       |                         ^
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alex J.C. Witsil <alexjcwitsil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J.C."),
                    family = "Witsil",
                    role = c("aut", "cre"),
                    email = "alexjcwitsil@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Shota Ochi <shotaochi1990@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BalanceSimplest.Rd’:
    https://doi.org/10.5201/ipol.2011.llmps-scb
  File ‘DenoiseDCT.Rd’:
    https://doi.org/10.5201/ipol.2011.ys-dct
  File ‘EqualizePiecewise.Rd’:
    https://doi.org/10.5201/ipol.2012.lps-pae
  File ‘SPE.Rd’:
    https://doi.org/10.5201/ipol.2014.84
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘testthat.R’ [27s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(imager)
  Loading required package: magrittr
  
  Attaching package: 'magrittr'
  
  The following objects are masked from 'package:testthat':
  
      equals, is_less_than, not
  
  
  Attaching package: 'imager'
  
  The following object is masked from 'package:magrittr':
  
      add
  
  The following objects are masked from 'package:stats':
  
      convolve, spectrum
  
  The following object is masked from 'package:graphics':
  
      frame
  
  The following object is masked from 'package:base':
  
      save.image
  
  > 
  > test_check("imager")
  Saving _problems/test_load_save_videos-15.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_load_save_videos.R:15:13'): load_and_save_videos ───────────────
  Error in `expect(file_test("-f", ff), TRUE)`: `failure_message` must be a character vector, not `TRUE`.
  Backtrace:
      ▆
   1. └─testthat::expect(failure_message = TRUE) at test_load_save_videos.R:15:13
   2.   └─testthat:::check_character(failure_message)
   3.     └─testthat:::stop_input_type(...)
   4.       └─rlang::abort(message, ..., call = call, arg = arg)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
  Error:
  ! Test failures.
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Juergen Niedballa <niedballa@izw-berlin.de>’

The Description field contains
  <arXiv:1505.04597> and the U-Net++ architecture by Zhou et al. (2018)
  <arXiv:1807.10165>. We provide pre-trained models for assessing canopy
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ignacio Cordón <nacho.cordon.castillo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
checkRd: (-1) oversample.Rd:23-24: Lost braces
    23 | minority examples and majority ones, that is, the quotient {size of
       |                                                            ^
checkRd: (-1) oversample.Rd:24: Lost braces; missing escapes or markup?
    24 | minority class}/{size of majority class}. There are methods, such as
       |                 ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yuan Li <851277048@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daxuan", "Deng", "Yuan"),
                      family = "Li",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Li",
                      role = "cre",
                      email = "851277048@qq.com"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: omdbAPI documentation
    From: man/find_by_title.Rd
  URI: omdbAPI documentation
    From: man/search_by_title.Rd
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kai Wang <kai-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Kai"),
                      family = "Wang",
                      role = "aut"),
               person(given = "Kai",
                      family = "Wang",
                      role = "cre",
                      email = "kai-wang@uiowa.edu"))
as necessary.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘knitr’

Packages suggested but not available for checking: 'usethis', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Keefe Murphy <keefe.murphy@mu.ie>’

The BugReports field in DESCRIPTION has
  https://github.com/Keefe-Murphy/IMIFA
which should likely be
  https://github.com/Keefe-Murphy/IMIFA/issues
instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'ALEPlot', 'covr', 'keras', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ignacio Martinez <ignacio@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ignacio",
                    family = "Martinez",
                    role = c("aut", "cre"),
                    email = "ignacio@protonmail.com")
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Jan",
                      family = "Steinfeld",
                      role = "aut"))
as necessary.
Maintainer: ‘Ruzhang Zhao<ruzhangzhao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruzhang",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "ruzhangzhao@gmail.com"),
               person(given = "Pengyu",
                      family = "Hong",
                      role = "aut"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"))
as necessary.
Packages required but not available: 'airr', 'rlist'

Packages suggested but not available for checking:
  'knitr', 'roxygen2', 'pkgdown', 'rmarkdown', 'factoextra', 'quarto'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'quarto'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Quentin", "Giai"),
                    family = "Gianetto",
                    role = c("aut", "cre"),
                    email = "quentin2g@yahoo.fr")
as necessary.
Package required but not available: ‘missMDA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nery", "Sofia"),
                    family = "Huerta-Pacheco",
                    role = c("aut", "cre"),
                    email = "nehuerta@uv.mx")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'accdata', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jonas Christoffer Lindstrøm <jonaslindstrom88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonas", "Christoffer"),
                    family = "Lindstrøm",
                    role = c("aut", "cre"),
                    email = "jonaslindstrom88@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(implyr)
  Loading required package: DBI
  Loading required package: dplyr
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  > library(RJDBC)
  Error in library(RJDBC) : there is no package called 'RJDBC'
  Execution halted
Maintainer: ‘Andrea Cantieni <andrea.cantieni@phsz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Cantieni",
                    role = c("aut", "cre"),
                    email = "andrea.cantieni@phsz.ch")
as necessary.
Package required but not available: ‘Hmisc’

Package suggested but not available for checking: ‘compareGroups’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘tolerance’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Federico Casale <casale@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Federico",
                    family = "Casale",
                    role = c("aut", "cre"),
                    email = "casale@hhu.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Specified C++11: support will be removed soon
checkRd: (-1) imptree_params.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imptree_params.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imptree_params.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.imptree.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'prettydoc', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Maintainer: ‘Steffen Moritz <steffen.moritz10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Maintainer: ‘Ajit Johnson Nirmal <ajitjohnson.n@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ajit", "Johnson"),
                    family = "Nirmal",
                    role = c("aut", "cre"),
                    email = "ajitjohnson.n@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘vizdraws’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin A. Stoffel <martin.adam.stoffel@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'Hmisc', 'spelling', 'gt', 'flextable',
  'visOmopResults'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘IncidencePrevalence-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: optionsTableIncidence
> ### Title: Additional arguments for the functions tableIncidence.
> ### Aliases: optionsTableIncidence
> 
> ### ** Examples
> 
> {
+   optionsTableIncidence()
+ }
Error in loadNamespace(x) : there is no package called ‘visOmopResults’
Calls: optionsTableIncidence ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) make_likelihood_matrix.Rd:16: Lost braces; missing escapes or markup?
    16 | This function creates a matrix such that P[t, s] = P(C = t | I = s) = theta_{t-s} for s <= t and 0 otherwise.
       |                                                                             ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'DT', 'heatmaply', 'Hmisc', 'plotly', 'upsetjs'

Package suggested but not available for checking: ‘rtracklayer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Utkarsh", "J."),
                      family = "Dang",
                      role = c("aut", "cre"),
                      email = "utkarshdang@cunet.carleton.ca"),
               person(given = c("G.", "Brian"),
                      family = "Golding",
                      role = "aut"))
as necessary.
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

The Description field contains
  proposed in Huling, Greifer, and Chen (2021) <arxiv:2107.07086>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel Grose <dan.grose@lancaster.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "B."),
                      family = "Berrett",
                      role = "aut",
                      email = "t.berrett@statslab.cam.ac.uk"),
               person(given = c("Daniel", "J."),
                      family = "Grose",
                      role = c("cre", "ctb"),
                      email = "dan.grose@lancaster.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut",
                      email = "r.samworth@statslab.cam.ac.uk"))
as necessary.
Maintainer: ‘Simon Trimborn <trimborn.econometrics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Trimborn",
                    role = c("aut", "cre"),
                    email = "trimborn.econometrics@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘IndexComp.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexMemberSelection.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexMembersUpdate.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexUpdate.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘RelativeWeights.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘SwitchDates.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
Package required but not available: ‘fGarch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alejandro Saavedra-Nieves <alejandro.saavedra.nieves@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Saavedra-Nieves",
                      role = c("aut", "cre"),
                      email = "alejandro.saavedra.nieves@gmail.com"),
               person(given = "Paula",
                      family = "Saavedra-Nieves",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Graham White <g.white@unswalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Graham",
                    family = "White",
                    role = c("aut", "cre"),
                    email = "g.white@unswalumni.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘FactoMineR’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(indiedown)
  > 
  > test_check("indiedown")
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 3 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • Ignore for now (1): 'test-create_indiedown_package.R:34:3'
  • On CRAN (1): 'test-create_indiedown_package.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-install.R:12:3'): create_indiedown_package() can be installed ──
  Expected `callr::rcmd("INSTALL", "mydown", fail_on_status = TRUE)` not to throw any errors.
  Actually got a <system_command_status_error> with message:
    ! System command 'R' failed
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-install.R:12:3
    2. │ └─testthat:::expect_condition_matching_(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─callr::rcmd("INSTALL", "mydown", fail_on_status = TRUE)
    8.   └─callr:::run_r(options)
    9.     ├─base::with(...)
   10.     └─base::with.default(...)
   11.       └─base::eval(substitute(expr), data, enclos = parent.frame())
   12.         └─base::eval(substitute(expr), data, enclos = parent.frame())
   13.           ├─callr:::with_envvar(...)
   14.           │ └─base::force(code)
   15.           ├─base::do.call(...)
   16.           └─processx (local) `<fn>`(...)
   17.             └─throw(...)
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 3 ]
  Error:
  ! Test failures.
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Geoff Hosack <geoff.hosack@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Geoffrey", "R."),
                      family = "Hosack",
                      role = "aut"),
               person(given = "Geoff",
                      family = "Hosack",
                      role = "cre",
                      email = "geoff.hosack@csiro.au"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ana C. Cebrian <acebrian@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ana", "C."),
                    family = "Cebrian",
                    role = c("aut", "cre"),
                    email = "acebrian@unizar.es")
as necessary.
checkRd: (-1) process_stats.Rd:11: Lost braces; missing escapes or markup?
    11 | the {janitor} package}
       |     ^
checkRd: (-1) theme_industRial.Rd:40: Lost braces; missing escapes or markup?
    40 | adapted from the package {cowplot} by Claus O.Wilke and reflects the principles
       |                          ^
checkRd: (-1) theme_industRial.Rd:45: Lost braces; missing escapes or markup?
    45 | It basically combines the half open theme with a grid background from {cowplot}
       |                                                                       ^
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Eduardo Flores <eduardo@enelmargen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eduardo",
                    family = "Flores",
                    role = c("aut", "cre"),
                    email = "eduardo@enelmargen.org")
as necessary.
Maintainer: ‘Ivan Skliarov <i.skliarov@student.uw.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Skliarov",
                    role = c("aut", "cre"),
                    email = "i.skliarov@student.uw.edu.pl")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jonas Haslbeck <jonashaslbeck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lourens",
                      family = "Waldorp",
                      role = "aut",
                      email = "waldorp@uva.nl"),
               person(given = "Jonas",
                      family = "Haslbeck",
                      role = c("aut", "cre"),
                      email = "jonashaslbeck@gmail.com"))
as necessary.
Package required but not available: ‘robin’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running examples in ‘inferCSN-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_dynamic_networks
> ### Title: Plot dynamic networks
> ### Aliases: plot_dynamic_networks
> 
> ### ** Examples
> 
> data(example_matrix)
> network <- inferCSN(example_matrix)[1:100, ]
ℹ [2025-12-06 14:44:20] Running for <dense matrix>.
◌ [2025-12-06 14:44:20] Checking input parameters...
ℹ [2025-12-06 14:44:20] Using `L0` sparse regression model
ℹ [2025-12-06 14:44:20] Using 1 core
ℹ [2025-12-06 14:44:20] Building results
✔ [2025-12-06 14:44:20] Run done.
> network$celltype <- c(
+   rep("cluster1", 20),
+   rep("cluster2", 20),
+   rep("cluster3", 20),
+   rep("cluster5", 20),
+   rep("cluster6", 20)
+ )
> 
> celltypes_order <- c(
+   "cluster5", "cluster3",
+   "cluster2", "cluster1",
+   "cluster6"
+ )
> 
> plot_dynamic_networks(
+   network,
+   celltypes_order = celltypes_order
+ )
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
ℹ The deprecated feature was likely used in the inferCSN package.
  Please report the issue at <https://github.com/mengxu98/inferCSN/issues>.
> 
> plot_dynamic_networks(
+   network,
+   celltypes_order = celltypes_order[1:3]
+ )
> 
> plot_dynamic_networks(
+   network,
+   celltypes_order = celltypes_order,
+   plot_type = "ggplotly"
+ )
Error in loadNamespace(x) : there is no package called ‘plotly’
Calls: plot_dynamic_networks ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Denis Talbot <denis.talbot@fmed.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Talbot",
                      role = c("aut", "cre"),
                      email = "denis.talbot@fmed.ulaval.ca"),
               person(given = "Thierry",
                      family = "Duchesne",
                      role = "aut"),
               person(given = "Jacques",
                      family = "Brisson",
                      role = "aut"),
               person(given = "Nathalie",
                      family = "Vandal",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Evan Poworoznek <infinitefactorpackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Evan",
                    family = "Poworoznek",
                    role = c("aut", "cre"),
                    email = "infinitefactorpackage@gmail.com")
as necessary.
Specified C++11: support will be removed soon
Maintainer: ‘Yufang Qin <yfqin@shou.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yufang",
                    family = "Qin",
                    role = c("aut", "cre"),
                    email = "yfqin@shou.edu.cn")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘xlsx’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rense Nieuwenhuis <rense.nieuwenhuis@sofi.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rense",
                      family = "Nieuwenhuis",
                      role = c("aut", "cre"),
                      email = "rense.nieuwenhuis@sofi.su.se"),
               person(given = "Ben",
                      family = "Pelzer",
                      role = "aut"),
               person(given = c("Manfred", "te"),
                      family = "Grotenhuis",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) school23.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) school23.Rd:35: Escaped LaTeX specials: \&
Maintainer: ‘Aditya Khanna <khanna7.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Jacobs",
                      role = "aut"),
               person(given = "Aditya",
                      family = "Khanna",
                      role = c("aut", "cre"),
                      email = "khanna7.work@gmail.com"),
               person(given = "Kamesh",
                      family = "Madduri",
                      role = "ctb"),
               person(given = "David",
                      family = "Bader",
                      role = "ctb"))
as necessary.
Maintainer: ‘Adrian Salavaty <abbas.salavaty@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abbas",
                      family = "Salavaty",
                      role = c("aut", "cre"),
                      comment = "Adrian"),
               person(given = "Mirana",
                      family = "Ramialison",
                      role = "ths"),
               person(given = c("Peter", "D."),
                      family = "Currie",
                      role = "ths"),
               person(given = "Adrian",
                      family = "Salavaty",
                      role = "cre",
                      email = "abbas.salavaty@gmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'Hmisc', 'NNS', 'colourpicker', 'DT', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Dominik Leutnant <leutnant@fh-muenster.de>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Larsen Kim <kblarsen4@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Information.Rd’:
    \keyword{IV,}
    \keyword{NIV,}
    \keyword{NWOE,}
    \keyword{WOE,}
    \keyword{classification,}
    \keyword{weight-of-evidence,}
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/gamma_imputation_Jackson_2014.Rnw’
   ‘inst/doc/risk_score_imputation_Hsu_2009.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gMCP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Paul R Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R"),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Package required but not available: ‘mixtools’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Patrick E. Meyer <software@meyerp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Patrick", "E."),
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "software@meyerp.com")
as necessary.
Maintainer: ‘Murat Tinic <tinic@bilkent.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duygu",
                      family = "Celik",
                      role = "aut"),
               person(given = "Murat",
                      family = "Tinic",
                      role = c("aut", "cre"),
                      email = "tinic@bilkent.edu.tr"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘InfoTrad-package.Rd’:
    \keyword{Probability of Informed Trading (PIN), LK [TRUNCATED]
Maintainer: ‘Jake Anderson <ajakef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Anderson",
                    role = c("aut", "cre"),
                    email = "ajakef@gmail.com")
as necessary.
Found the following files/directories:
  ‘c.txt’ ‘rho.txt’ ‘sta.txt’ ‘topo.txt’
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  universe (Biecek 2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'r2d3', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘ingredients-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotD3.feature_importance_explainer
> ### Title: Plot Feature Importance Objects in D3 with r2d3 Package.
> ### Aliases: plotD3.feature_importance_explainer
> 
> ### ** Examples
> 
> library("DALEX")
Welcome to DALEX (version: 2.5.3).
Find examples and detailed introduction at: http://ema.drwhy.ai/
Additional features will be available after installation of: ggpubr.
Use 'install_dependencies()' to get all suggested dependencies

Attaching package: ‘DALEX’

The following object is masked from ‘package:ingredients’:

    feature_importance

> library("ingredients")
> 
> lm_model <- lm(m2.price ~., data = apartments)
> explainer_lm <- explain(lm_model,
+                         data = apartments[,-1],
+                         y = apartments[,1],
+                         verbose = FALSE)
> 
> fi_lm <- feature_importance(explainer_lm,
+       loss_function = DALEX::loss_root_mean_square, B = 1)
> 
> head(fi_lm)
           variable mean_dropout_loss label
1      _full_model_          279.3262    lm
2 construction.year          279.4293    lm
3          no.rooms          288.6068    lm
4             floor          494.6028    lm
5           surface          619.8296    lm
6          district         1007.1649    lm
> plotD3(fi_lm)
Error in loadNamespace(x) : there is no package called ‘r2d3’
Calls: plotD3 ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David Valentim Dias <dvdscripter@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "Valentim"),
                    family = "Dias",
                    role = c("aut", "cre"),
                    email = "dvdscripter@gmail.com")
as necessary.
Maintainer: ‘Lev Kuznetsov <levk@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lev",
                    family = "Kuznetsov",
                    role = c("aut", "cre"),
                    email = "levk@jimmy.harvard.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown', 'spelling', 'survminer'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Virgilio Gómez-Rubio <virgilio.gomez@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Virgilio",
                      family = "Gómez-Rubio",
                      role = c("aut", "cre"),
                      email = "virgilio.gomez@uclm.es"),
               person(given = "Roger",
                      family = "Bivand",
                      role = "aut",
                      email = "Roger.Bivand@nhh.no"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'INLA', 'knitr', 'rgl', 'rmarkdown', 'scoringRules',
  'sphereplot', 'DiagrammeR'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'INLA', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'INLA', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running examples in ‘inlpubs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: make_webpages
> ### Title: Create Author and Publication Webpages
> ### Aliases: make_webpages
> ### Keywords: internal
> 
> ### ** Examples
> 
> destdir <- tempfile("")
> make_webpages(
+   authors = inlpubs::authors,
+   pubs = inlpubs::pubs,
+   destdir = destdir,
+   quiet = TRUE
+ )
Error in loadNamespace(x) : there is no package called ‘kableExtra’
Calls: make_webpages ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'keras', 'knitr', 'plotly', 'rmarkdown', 'spelling',
  'tensorflow'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'oeli', 'optimizeR'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'TestFunctions'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rebaudo Francois <francois.rebaudo@ird.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rebaudo",
                    family = "Francois",
                    role = c("aut", "cre"),
                    email = "francois.rebaudo@ird.fr",
                    comment = "IRD, UMR EGCE, IRD, CNRS, Univ. ParisSaclay")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘flipr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package required but not available: ‘DT’

Packages suggested but not available for checking:
  'covr', 'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'prettydoc', 'kableExtra', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'crch', 'epiR', 'gam', 'gt', 'knitr', 'mclogit', 'rmarkdown', 'rms',
  'rstanarm'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘insight-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: is_converged
> ### Title: Convergence test for mixed effects models
> ### Aliases: is_converged
> 
> ### ** Examples
> 
> ## Don't show: 
> if (require("lme4", quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ library(lme4)
+ data(cbpp)
+ set.seed(1)
+ cbpp$x <- rnorm(nrow(cbpp))
+ cbpp$x2 <- runif(nrow(cbpp))
+ 
+ model <- glmer(
+   cbind(incidence, size - incidence) ~ period + x + x2 + (1 + x | herd),
+   data = cbpp,
+   family = binomial()
+ )
+ 
+ is_converged(model)
+ ## Don't show: 
+ }) # examplesIf
> library(lme4)
> data(cbpp)
> set.seed(1)
> cbpp$x <- rnorm(nrow(cbpp))
> cbpp$x2 <- runif(nrow(cbpp))
> model <- glmer(cbind(incidence, size - incidence) ~ period + x + x2 + 
+     (1 + x | herd), data = cbpp, family = binomial())
boundary (singular) fit: see help('isSingular')
> is_converged(model)
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Calls: withAutoprint ... eval -> eval -> <Anonymous> -> .handleSimpleError -> h
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rJava’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tengyao Wang <t.wang59@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tengyao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "t.wang59@lse.ac.uk"),
               person(given = "Bertille",
                      family = "Follain",
                      role = "aut"),
               person(given = "Richard",
                      family = "Samworth",
                      role = "aut"))
as necessary.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘devtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pedro Fonseca <pedro.teles.fonseca@phd.iseg.ulisboa.pt>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available:
  'DT', 'knitr', 'plotly', 'rmarkdown', 'tippy'

Packages suggested but not available for checking: 'spelling', 'lintr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "maloneypatr",
                      role = c("aut", "cre")),
               person(given = "Irucka",
                      family = "Embry",
                      role = c("aut", "ctb", "cre"),
                      email = "iembry@ecoccs.com"))
as necessary.
checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup?
    44 | menu in the {utils} package, yesno in the {devtools} package.
       |             ^
checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup?
    44 | menu in the {utils} package, yesno in the {devtools} package.
       |                                           ^
checkRd: (-1) install.FFmpeg.Rd:25: Lost braces; missing escapes or markup?
    25 | This function is useful for saveVideo() in the {animation} package.
       |                                                ^
checkRd: (-1) install.SWFTools.Rd:27: Lost braces; missing escapes or markup?
    27 | This function is useful for saveSWF() in the {animation} package.
       |                                              ^
checkRd: (-1) os.shutdown.Rd:25: Lost braces; missing escapes or markup?
    25 | This function is a modified version of Yihui's shutdown function from the {fun} package.
       |                                                                           ^
Maintainer: ‘Pablo Barbera <pbarbera@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Barbera",
                      role = c("aut", "cre"),
                      email = "pbarbera@usc.edu"),
               person(given = "Tiago",
                      family = "Dantas",
                      role = "ctb"),
               person(given = "Jonne",
                      family = "Guyt",
                      role = "ctb"))
as necessary.
Maintainer: ‘Alicja Wolny--Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny--Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Michal",
                      family = "Trzesiok",
                      role = "aut"))
as necessary.
Malformed Title field: should not end in a period.
Package required but not available: ‘DHARMa’

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘spcosa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jun Park <jun.park@alumni.iu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giorgos",
                      family = "Bakoyannis",
                      role = "aut",
                      email = "gbakogia@iu.edu"),
               person(given = "Jun",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "jun.park@alumni.iu.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yuan Wu <yuan.wu@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiaxing",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "yuan.wu@duke.edu"),
               person(given = "Xiaofei",
                      family = "Wang",
                      role = "aut"),
               person(given = "Kouros",
                      family = "Owzar.",
                      role = "aut"))
as necessary.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/intcensROC.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rudradev",
                      family = "Sengupta",
                      role = c("aut", "cre"),
                      email = "rudradev.sengupta@uhasselt.be"),
               person(given = c("Nolen", "Joy"),
                      family = "Perualila",
                      role = "aut"))
as necessary.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kasia Kulma <katarzyna.kulma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasia",
                    family = "Kulma",
                    role = c("aut", "cre"),
                    email = "katarzyna.kulma@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'vcr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(intensegRid)
  > 
  > test_check("intensegRid")
  Error in `source_dir()`:
  ! Failed to evaluate './setup-intensegRid.R'.
  Caused by error in `library()`:
  ! there is no package called 'vcr'
  Backtrace:
       ▆
    1. ├─testthat::test_check("intensegRid")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_setup(".", env)
    7. │           └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(...)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       └─base::library("vcr") at ./setup-intensegRid.R:1:1
   15. │                         └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
   16. └─testthat (local) `<fn>`(`<pckgNtFE>`)
   17.   └─cli::cli_abort(...)
   18.     └─rlang::abort(...)
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Author field differs from that derived from Authors@R
  Author:    ‘David Baranger [aut, cre] (<https://orcid.org/0000-0002-6659-357X>, davidbaranger.com), Brandon Goldstein [ctb], Megan Finsaas [ctb], Thomas Olino [ctb], Colin Vize [ctb], Don Lynam [ctb]’
  Authors@R: ‘David Baranger [aut, cre] (ORCID: <https://orcid.org/0000-0002-6659-357X>, website: davidbaranger.com), Brandon Goldstein [ctb], Megan Finsaas [ctb], Thomas Olino [ctb], Colin Vize [ctb], Don Lynam [ctb]’
Package required but not available: ‘rms’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Babatunde Alli <babatunde.alli@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babatunde",
                    family = "Alli",
                    role = c("aut", "cre"),
                    email = "babatunde.alli@mail.mcgill.ca")
as necessary.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: ‘rstanarm’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Justin Esarey <justin@justinesarey.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justin",
                      family = "Esarey",
                      role = c("aut", "cre"),
                      email = "justin@justinesarey.com"),
               person(given = c("Jane", "Lawrence"),
                      family = "Sumner",
                      role = "aut"))
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘quarto’

VignetteBuilder package required for checking but not installed: ‘quarto’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'DT', 'FactoMineR', 'factoextra', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fei Zhou <fei.zhou@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fei",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "fei.zhou@outlook.com"),
               person(given = "Jie",
                      family = "Ren",
                      role = "aut"),
               person(given = "Yuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xiaoxi",
                      family = "Li",
                      role = "aut"),
               person(given = "Cen",
                      family = "Wu",
                      role = "aut"),
               person(given = "Yu",
                      family = "Jiang",
                      role = "aut"))
as necessary.
Maintainer: ‘Olivier LE GOFF <olivierlegoff1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Olivier", "LE"),
                    family = "GOFF",
                    role = c("aut", "cre"),
                    email = "olivierlegoff1@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘xlsx’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'knitr', 'roxygen2'

Packages suggested but not available for checking:
  'rmarkdown', 'devtools', 'usethis', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Specified C++11: support will be removed soon
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Bastian Becker <bastian.becker@bayer.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bastian",
                      family = "Becker",
                      role = c("aut", "cre"),
                      email = "bastian.becker@bayer.com"),
               person(given = "Katharina",
                      family = "Mueller",
                      role = "aut"),
               person(given = "Hermann",
                      family = "Kulmann",
                      role = "aut"))
as necessary.
Maintainer: ‘Bastian Becker <bastian.becker@bayer.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bastian",
                      family = "Becker",
                      role = c("aut", "cre"),
                      email = "bastian.becker@bayer.com"),
               person(given = "Katharina",
                      family = "Mueller",
                      role = "aut"),
               person(given = "Hermann",
                      family = "Kulmann",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'rmarkdown', 'flextable'

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michel Ballings <michel.ballings@GMail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) remit.Rd:32: Lost braces
    32 | A data set to replicate the findings of Escrib\`{a}-Folch,
       |                                                 ^
checkRd: (-1) remit.Rd:38: Lost braces
    38 | Escrib\`{a}-Folch, A., Meseguer, C. and Wright, J. (2018), Remittances and Protest in Dictatorships. American Journal of Political Science, 62: 889-904. \doi{10.1111/ajps.12382}
       |         ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Zehang Richard Li <lizehang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zehang", "Richard"),
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizehang@gmail.com"),
               person(given = "Tyler",
                      family = "McCormick",
                      role = "aut"),
               person(given = "Sam",
                      family = "Clark",
                      role = "aut"),
               person(given = "Peter",
                      family = "Byass",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
checkRd: (-1) interval-internal.Rd:40: Lost braces
    40 | \item{dqfunc}{function, density of the results of the quantile function, e.g., function(x){dnorm(qnorm(x))} (used for 'general' scores, 
       |                                                                                           ^
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kimihiro Noguchi <kimihiro.noguchi@wwu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'clinUtils', 'flextable'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FactoMineR', 'DT'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'quarto'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'quarto'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'cleanrmd', 'devtools'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
checkRd: (-1) decompose_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running examples in ‘inTrees-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: XGB2List
> ### Title: Transform an xgboost object to a list of trees
> ### Aliases: XGB2List
> ### Keywords: xgboost
> 
> ### ** Examples
> 
> 	library(data.table)

Attaching package: ‘data.table’

The following object is masked from ‘package:base’:

    %notin%

> 	library(xgboost)
> 	# test data set 1: iris
> 	X <- within(iris,rm("Species")); Y <- iris[,"Species"]
> 	X <- within(iris,rm("Species")); Y <- iris[,"Species"]
> 	model_mat <- model.matrix(~. -1, data=X)
> 	xgb <- xgboost(model_mat, label = as.numeric(Y) - 1, nrounds = 20, 
+ 		objective = "multi:softprob", num_class = 3 )
Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
  Passed unrecognized parameters: num_class. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
  Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
Error in process.y.margin.and.objective(y, base_margin, objective, params) : 
  Got numeric 'y' - supported objectives for this data are: reg:squarederror, reg:squaredlogerror, reg:logistic, reg:pseudohubererror, reg:absoluteerror, reg:quantileerror, count:poisson, reg:gamma, reg:tweedie. Was passed: multi:softprob
Calls: xgboost -> process.y.margin.and.objective
Execution halted
Maintainer: ‘Jorge Luis Ojeda Cabrera <jojeda@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jorge", "Luis", "Ojeda"),
                    family = "Cabrera",
                    role = c("aut", "cre"),
                    email = "jojeda@unizar.es")
as necessary.
Package required but not available: ‘rlist’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kerstin Johnsson <kerstin.johnsson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kerstin",
                      family = "Johnsson",
                      role = c("aut", "cre"),
                      email = "kerstin.johnsson@hotmail.com"),
               person(given = "Lund",
                      family = "University",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Adriaan M. Dokter <amd427@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adriaan", "M."),
                    family = "Dokter",
                    role = c("aut", "cre"),
                    email = "amd427@cornell.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) intRvals-package.Rd:60: Lost braces
    60 | B\'{e}dard, J. & Gauthier, G. 1986. Assessment of faecal output in geese. Journal of Applied Ecology, 23, 77-90.
       |    ^
checkRd: (-1) partition.Rd:64: Lost braces
    64 | Bates, D., M\"{a}chler, M., Bolker, B.M. & Walker, S.C. (2015). Fitting linear mixed-effects models using lme4. Journal of Statistical Software, 67, 1-48.
       |               ^
Cannot process vignettes
Packages suggested but not available for checking:
  'INLA', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Daniel Caro <dcarov@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Caro",
                      role = c("aut", "cre"),
                      email = "dcarov@gmail.com"),
               person(given = "Przemyslaw",
                      family = "Biecek",
                      role = "aut",
                      email = "przemyslaw.biecek@gmail.com"))
as necessary.
Packages required but not available: 'Hmisc', 'memisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolai",
                    family = "Meinshausen",
                    role = c("aut", "cre"),
                    email = "meinshausen@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Marcus Rosenblatt <marcus.rosenblatt@fdm.uni-freiburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcus",
                    family = "Rosenblatt",
                    role = c("aut", "cre"),
                    email = "marcus.rosenblatt@fdm.uni-freiburg.de")
as necessary.
Maintainer: ‘Fred Hasselman <fred.hasselman@ru.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Brandon M. Greenwell <greenwell.brandon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brandon", "M."),
                    family = "Greenwell",
                    role = c("aut", "cre"),
                    email = "greenwell.brandon@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/introduction.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Hakon K. Gjessing <hakon.gjessing@uib.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hakon", "K."),
                    family = "Gjessing",
                    role = c("aut", "cre"),
                    email = "hakon.gjessing@uib.no")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'tidyverse', 'flextable', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘expss’

Packages suggested but not available for checking:
  'covr', 'ggmosaic', 'kableExtra', 'knitr', 'plotly', 'waffle'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘iNZightPlots’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [21s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(iNZightTools)
  
  Attaching package: 'iNZightTools'
  
  The following object is masked from 'package:stats':
  
      filter
  
  The following object is masked from 'package:base':
  
      %||%
  
  > 
  > test_check("iNZightTools")
  Loading required package: grid
  Loading required package: Matrix
  Loading required package: survival
  
  Attaching package: 'survey'
  
  The following object is masked from 'package:graphics':
  
      dotchart
  
  Saving _problems/test_linked-91.R
  Saving _problems/test_linked-120.R
  
  Attaching package: 'magrittr'
  
  The following object is masked from 'package:purrr':
  
      set_names
  
  The following objects are masked from 'package:testthat':
  
      equals, is_less_than, not
  
  [ FAIL 2 | WARN 0 | SKIP 5 | PASS 349 ]
  
  ══ Skipped tests (5) ═══════════════════════════════════════════════════════════
  • On CRAN (2): 'test_smart_read.R:29:5', 'test_smart_read.R:259:5'
  • {expss} is not installed (1): 'test_dict.R:1:1'
  • {surveyspec} is not installed (1): 'test_survey_design.R:6:1'
  • {validate} is not installed (1): 'test_validation.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_linked.R:91:5'): Link spec file ────────────────────────────────
  Error in `read_link_spec(t4)`: Please install the suggested package: 'yaml'
  Backtrace:
      ▆
   1. └─iNZightTools:::read_link_spec(t4) at test_linked.R:91:5
  ── Error ('test_linked.R:120:5'): Dicionaries load ─────────────────────────────
  Error in `read_link_spec(x)`: Please install the suggested package: 'yaml'
  Backtrace:
      ▆
   1. └─iNZightTools::load_linked(tc, con = con, keep_con = TRUE) at test_linked.R:120:5
   2.   └─iNZightTools:::read_link_spec(x)
  
  [ FAIL 2 | WARN 0 | SKIP 5 | PASS 349 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘John Wade <jjpwade2@illinois.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘f.influence.Rd’:
    https://doi.org/10.1080/09535319200000013
checkRd: (-1) f.influence.Rd:25: Lost braces; missing escapes or markup?
    25 | where F is the field of influence, k is order of influence, l_{ij} is the ith row and jth column element of the Leontief Inverse and -s indicates the sth element has been removed.
       |                                                               ^
Packages required but not available: 'plotly', 'knitr'

Packages suggested but not available for checking:
  'keyring', 'colourpicker', 'bsplus', 'DT', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matlib’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jan Budczies <jan.budczies@med.uni-heidelberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jan",
                      family = "Budczies",
                      role = c("aut", "cre"),
                      email = "jan.budczies@med.uni-heidelberg.de"),
               person(given = "Eva",
                      family = "Romanovsky",
                      role = "aut"))
as necessary.
Maintainer: ‘Allen Goebl <goebl005@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Allen",
                      family = "Goebl",
                      role = c("aut", "cre"),
                      email = "goebl005@umn.edu"),
               person(given = "Jeff",
                      family = "Jones",
                      role = "aut",
                      email = "jone1087@umn.ed"),
               person(given = "Adam",
                      family = "Beatty",
                      role = "aut",
                      email = "abeatty@humrro.org"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) aiPux.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dls2007.Rd:19: Lost braces
    19 | impact. emph{Journal of Applied Psychology}, 92(5), 1380.
       |             ^
checkRd: (-1) paretoXX.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:22-23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:32-33: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David J. H. Shih <djh.shih@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J.", "H."),
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "djh.shih@gmail.com")
as necessary.
Maintainer: ‘Timothy L. McMurry <tmcmurry@virginia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "L."),
                      family = "McMurry",
                      role = c("aut", "cre"),
                      email = "tmcmurry@virginia.edu"),
               person(given = c("Dimitris", "N."),
                      family = "Politis",
                      role = "aut"))
as necessary.
Packages required but not available: 'kableExtra', 'knitr'

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Taylor",
                      family = "Arnold",
                      role = "aut",
                      email = "taylor.arnold@acm.org"))
as necessary.
File ‘iotools/libs/iotools.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘NAMED’, ‘SETLENGTH’,
    ‘SET_NAMED’
These entry points may be removed soon:
‘SET_NAMED’, ‘NAMED’, ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexander Rossell Hayes <alexander@rossellhayes.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ian E. Fellows <ian@fellstat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ian", "E."),
                    family = "Fellows",
                    role = c("aut", "cre"),
                    email = "ian@fellstat.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jie-Huei Wang <jhwang@mail.fcu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie-Huei",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "jhwang@mail.fcu.edu.tw"),
               person(given = "Yi-Hau",
                      family = "Chen",
                      role = "aut"))
as necessary.
Package required but not available: ‘gam’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jemma Stachelek <jemma.stachelek@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne-Laure",
                      family = "Boulesteix",
                      role = c("aut", "cre"),
                      email = "boulesteix@ibe.med.uni-muenchen.de"),
               person(given = "Mathias",
                      family = "Fuchs",
                      role = "aut"),
               person(given = "Gerhard",
                      family = "Schulze",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander W Blocker <ablocker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alexander", "W"),
                    family = "Blocker",
                    role = c("aut", "cre"),
                    email = "ablocker@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "simon.urbanek@r-project.org"),
               person(given = "Tobias",
                      family = "Wichtrey",
                      role = "aut",
                      email = "tobias@tarphos.de"))
as necessary.
Package required but not available: ‘rJava’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'roxygen2', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) check_convergence.Rd:47: Lost braces
    47 | \code{conv_plot}: code{ipm} invisibly.
       |                       ^
checkRd: (-1) init_ipm.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:70-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) make_ipm.Rd:276: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:277-281: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:282-286: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:287-291: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:292-293: Lost braces in \itemize; \value handles \item{}{} directly
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Niklas Hohmann <Niklas.Hohmann@fau.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Niklas",
                    family = "Hohmann",
                    role = c("aut", "cre"),
                    email = "niklas.hohmann@fau.de")
as necessary.

The Description field contains
  (2019) <arXiv:1901.10754>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jean-Benoit Rossel <jean-benoit.rossel@unisante.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Jean-Benoit"),
                      family = "Rossel",
                      role = "aut"),
               person(given = c("Prof.", "Valentin"),
                      family = "Rousson",
                      role = "aut"),
               person(given = c("Dr.", "Yves"),
                      family = "Eggli",
                      role = "aut"),
               person(given = "Jean-Benoit",
                      family = "Rossel",
                      role = "cre",
                      email = "jean-benoit.rossel@unisante.ch"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Rama Ranjan Panda<rrpanda.phd2018.cs@nitrr.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rama", "Ranjan"),
                      family = "Panda",
                      role = c("aut", "cre"),
                      email = "rrpanda.phd2018.cs@nitrr.ac.in"),
               person(given = c("Naresh", "Kumar"),
                      family = "Nagwani",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'BiocStyle'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'DT', 'knitr', 'rmarkdown', 'vcr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ipumsr)
  > 
  > test_check("ipumsr")
  Error in `source_dir()`:
  ! Failed to evaluate './setup-ipumsr.R'.
  Caused by error in `library()`:
  ! there is no package called 'vcr'
  Backtrace:
       ▆
    1. ├─testthat::test_check("ipumsr")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_setup(".", env)
    7. │           └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(...)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       └─base::library("vcr") at ./setup-ipumsr.R:1:1
   15. │                         └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
   16. └─testthat (local) `<fn>`(`<pckgNtFE>`)
   17.   └─cli::cli_abort(...)
   18.     └─rlang::abort(...)
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ana Perez-Gonzalez <anapg@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Maria"),
                      family = "Bianco",
                      role = "aut"),
               person(given = "Graciela",
                      family = "Boente",
                      role = "aut"),
               person(given = "Ana",
                      family = "Perez-Gonzalez",
                      role = c("aut", "cre"),
                      email = "anapg@uvigo.es"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = "Rui",
                      family = "Wang",
                      role = "aut",
                      email = "rwang@hsph.harvard.edu"))
as necessary.
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'DT', 'knitr', 'plotly', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/irace-package.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Eufrasio de A. Lima Neto <eufrasio@de.ufpb.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eufrasio", "de", "A.", "Lima", "Neto", "/", "Claudio", "A.", "V.", "de", "Souza", "Filho", "/", "Pedro", "R.", "D."),
                      family = "Marinho",
                      role = "aut"),
               person(given = c("Eufrasio", "de", "A.", "Lima"),
                      family = "Neto",
                      role = "cre",
                      email = "eufrasio@de.ufpb.br"))
as necessary.
Maintainer: ‘Jelena Kovacic <jkovacic@imi.hr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jelena",
                    family = "Kovacic",
                    role = c("aut", "cre"),
                    email = "jkovacic@imi.hr")
as necessary.
Maintainer: ‘Ivan Fuentes <jivfur@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ivan",
                      family = "Fuentes",
                      role = c("aut", "cre"),
                      email = "jivfur@tamu.edu"),
               person(given = "Thomas",
                      family = "DeWitt",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Ioerger",
                      role = "aut"),
               person(given = "Michael",
                      family = "Bishop",
                      role = "aut"))
as necessary.

The Description field contains
  proposed in Chen(2013) <arXiv:1606.03658>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fBasics’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rstanarm', 'RSelenium'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DiagrammeR'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) partial_eigen.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) partial_eigen.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:41-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:47-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kilem L. Gwet <gwet@agreestat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kilem", "L."),
                      family = "Gwet",
                      role = c("aut", "cre"),
                      email = "gwet@agreestat.com"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) bp.coeff.raw.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) fleiss.kappa.raw.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \&
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'ChemoSpec', 'kableExtra', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘ir-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ir_bc
> ### Title: Performs baseline correction on infrared spectra
> ### Aliases: ir_bc
> 
> ### ** Examples
> 
> library(dplyr)

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> 
> # rubberband baseline correction
> x1 <-
+    ir::ir_sample_data |>
+    dplyr::slice(1:10) |>
+    ir::ir_bc(method = "rubberband")
> 
> # polynomial baseline correction
> if(!requireNamespace("ChemoSpec", quietly = TRUE)) {
+   x2 <-
+     ir::ir_sample_data |>
+     dplyr::slice(1:10) |>
+     ir::ir_bc(method = "polynomial", degree = 2)
+ }
Error in `ir_bc_polynomial()`:
! Package 'ChemoSpec' required. Please install that first.
Backtrace:
    ▆
 1. └─ir::ir_bc(...)
 2.   └─ir::ir_bc_polynomial(x, ..., return_bl = return_bl)
 3.     └─rlang::abort("Package 'ChemoSpec' required. Please install that first.")
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kilem L. Gwet <gwet@agreestat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kilem", "L."),
                      family = "Gwet",
                      role = c("aut", "cre"),
                      email = "gwet@agreestat.com"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Markus Brueckl <markus.brueckl@tu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Brueckl",
                      role = c("aut", "cre"),
                      email = "markus.brueckl@tu-berlin.de"),
               person(given = "Florian",
                      family = "Heuer",
                      role = c("aut", "trl")))
as necessary.
Maintainer: ‘Matthias Gamer <m.gamer@uke.uni-hamburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthias",
                      family = "Gamer",
                      role = c("aut", "cre"),
                      email = "m.gamer@uke.uni-hamburg.de"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "aut",
                      email = "jim@bitwrit.com.au"),
               person(given = c("Ian", "Fellows", "Puspendra", "Singh"),
                      family = "<puspendra.pusp22@gmail.com>",
                      role = "aut",
                      email = "puspendra.pusp22@gmail.com"))
as necessary.
Packages required but not available: 'DT', 'rmarkdown', 'gt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fGarch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘usethis’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Huseyin Yildiz <huseyinyildiz35@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Huseyin",
                    family = "Yildiz",
                    role = c("aut", "cre"),
                    email = "huseyinyildiz35@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(tidyverse) # version: tidyverse_2.0.0
  Error in library(tidyverse) : there is no package called 'tidyverse'
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc.pvalues.R’ ‘helper.R’ ‘hypothesis_templates.R’ ‘irtpwr.R’
    ‘mml.fit.R’ ‘setup.data.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ivailo Partchev <partchev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaojun",
                      family = "Li",
                      role = "aut"),
               person(given = "Ivailo",
                      family = "Partchev",
                      role = c("aut", "cre"),
                      email = "partchev@gmail.com"),
               person(given = "Paul",
                      family = "De Boeck",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'knitr', 'flextable'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bjorn Andersson <bjoern.h.andersson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjorn",
                    family = "Andersson",
                    role = c("aut", "cre"),
                    email = "bjoern.h.andersson@gmail.com")
as necessary.
Maintainer: ‘W. Kyle Hamilton <kyle.hamilton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "Kyle"),
                      family = "Hamilton",
                      role = c("aut", "cre"),
                      email = "kyle.hamilton@gmail.com"),
               person(given = "Atsushi",
                      family = "Mizumoto",
                      role = "aut",
                      email = "atsushi@mizumot.com"))
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'xcms', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Minyu Wang <minyu.wang@petermac.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Minyu", "Wang,Yu", "Sun,Yu-Kuan"),
                      family = "Huang",
                      role = "aut"),
               person(given = "Minyu",
                      family = "Wang",
                      role = "cre",
                      email = "minyu.wang@petermac.org"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicole Schwitter <Nicole.Schwitter.1@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicole",
                    family = "Schwitter",
                    role = c("aut", "cre"),
                    email = "nicole.schwitter.1@warwick.ac.uk")
as necessary.
Maintainer: ‘Loris Michel <michel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Loris",
                      family = "Michel",
                      role = c("aut", "cre"),
                      email = "michel@stat.math.ethz.ch"),
               person(given = "Meta-Lina",
                      family = "Spohn",
                      role = "aut"),
               person(given = "Jeffrey",
                      family = "Naef",
                      role = "aut"))
as necessary.

The Description field contains
  Michel et al. (2021) <arXiv:2106.03742>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Claus Ekstrom <ekstrom@sund.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Claus", "Thorn"),
                      family = "Ekstrøm",
                      role = "aut",
                      email = "ekstrom@sund.ku.dk"),
               person(given = "Helle",
                      family = "Sørensen",
                      role = "aut",
                      email = "helle@math.ku.dk"),
               person(given = "Claus",
                      family = "Ekstrom",
                      role = "cre",
                      email = "ekstrom@sund.ku.dk"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudia",
                      family = "van Borkulo",
                      role = "aut"),
               person(given = c("Sacha", "Epskamp;", "with", "contributions", "from", "Alexander"),
                      family = "Robitzsch",
                      role = "aut"),
               person(given = c("Mihai", "Alexandru"),
                      family = "Constantin",
                      role = "aut"),
               person(given = "Sacha",
                      family = "Epskamp",
                      role = "cre",
                      email = "mail@sachaepskamp.com"))
as necessary.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'simlandr'

Package suggested but not available for checking: ‘IsingFit’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gareth",
                      family = "James",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Witten",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Gunjan Bansal <gunjan.1512@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adarsh",
                      family = "Anand",
                      role = "aut"),
               person(given = "Gunjan",
                      family = "Bansal",
                      role = c("aut", "cre"),
                      email = "gunjan.1512@gmail.com"))
as necessary.
Packages required but not available: 'xlsx', 'rJava', 'xlsxjars'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hui Xie <huixie@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Xie",
                      role = c("aut", "cre"),
                      email = "huixie@uic.edu"),
               person(given = "Weihua",
                      family = "Gao",
                      role = "aut"),
               person(given = "Baodong",
                      family = "Xing",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Heitjan",
                      role = "aut"),
               person(given = "Donald",
                      family = "Hedeker",
                      role = "aut"),
               person(given = "Chengbo",
                      family = "Yuan",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iso8601todataframe.R’
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
File ‘isoband/libs/isoband.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David Conde <dconde@eio.uva.es>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘qgraph’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Justin Mathias <justin.m.mathias@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Justin",
                    family = "Mathias",
                    role = c("aut", "cre"),
                    email = "justin.m.mathias@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'config', 'DT', 'golem'

Package suggested but not available for checking: ‘shinytest2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexander Henzi <henzi.alexander@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  See Henzi, Ziegel, Gneiting (2020) <arXiv:1909.03725>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'spelling', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

Packages suggested but not available for checking: 'devtools', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/ISOpureRGuide.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rolf Turner <rolfturner@posteo.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "rolfturner@posteo.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calibfit.R’ ‘isofind.R’ ‘prepsources.R’ ‘serialize.R’
Maintainer: ‘Matteo Lacki <matteo.lacki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mateusz", "Krzysztof"),
                      family = "Lacki",
                      role = "aut"),
               person(given = "Michal",
                      family = "Startek",
                      role = "aut"),
               person(given = "Matteo",
                      family = "Lacki",
                      role = "cre",
                      email = "matteo.lacki@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: support will be removed soon
Maintainer: ‘Mary Meyer <meyer@stat.colostate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mary", "C"),
                      family = "Meyer",
                      role = "aut"),
               person(given = "Jiwen",
                      family = "Wu",
                      role = "aut"),
               person(given = c("Jean", "D."),
                      family = "Opsomer",
                      role = "aut"),
               person(given = "Mary",
                      family = "Meyer",
                      role = "cre",
                      email = "meyer@stat.colostate.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'DiagrammeR', 'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Uwe Block <u.block.mz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Uwe",
                      family = "Block",
                      role = c("aut", "cre"),
                      email = "u.block.mz@googlemail.com"),
               person(given = c("using", "an", "algorithm", "by", "Hatto"),
                      family = "von Hatzfeld",
                      role = "aut",
                      email = "hatto@salesianer.de"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bicycle_theft.R’ ‘car_fleet.R’ ‘crimes_against_life.R’
    ‘gun_seizure.R’ ‘gun_seizure_historical.R’ ‘monthly_stats.R’
    ‘monthly_stats_dictionary.R’ ‘population.R’ ‘spatial_info.R’
    ‘upp_data.R’ ‘yearly_stats.R’ ‘yearly_stats_dictionary.R’
checkRd: (-1) is_israd_database.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:26: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Manuel M. Müller <mm2559@cam.ac.uk>’

The Description field contains
  Reeve, Cannings and Samworth (2023) <arXiv:2305.04852v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘yaml’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'datamods', 'DT', 'reactable'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Luiz Henrique Keng Queiroz Junior <keng@ufg.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luiz", "Henrique", "Keng", "Queiroz"),
                      family = "Junior",
                      role = c("aut", "cre"),
                      email = "keng@ufg.br"),
               person(given = c("Vitor", "Mendes"),
                      family = "de Oliveira",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/vitor-mendes-iq/iSTATS
which should likely be
  https://github.com/vitor-mendes-iq/iSTATS/issues
instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Paul C Boutros <pboutros@mednet.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Natalie",
                      family = "Fox",
                      role = "aut"),
               person(given = c("Paul", "C"),
                      family = "Boutros",
                      role = "cre",
                      email = "pboutros@mednet.ucla.edu"))
as necessary.
Packages required but not available: 'keras', 'tensorflow'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/iSubGenGuide.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrew Teschendorff <a.teschendorff@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrew", "E"),
                      family = "Teschendorff",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Teschendorff",
                      role = "cre",
                      email = "a.teschendorff@ucl.ac.uk"))
as necessary.
Found the following files/directories:
  ‘RMTplot.pdf’
Maintainer: ‘Rebecca Steorts <beka@stat.duke.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘italy08.Rd’:
    \keyword{datasets,}
    \keyword{linkage,}
  File ‘italy10.Rd’:
    \keyword{datasets,}
    \keyword{linkage,}
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Michele Dalponte <michele.dalponte@fmach.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michele",
                    family = "Dalponte",
                    role = c("aut", "cre"),
                    email = "michele.dalponte@fmach.it")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Cengiz Zopluoglu <cen.zop@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cengiz",
                    family = "Zopluoglu",
                    role = c("aut", "cre"),
                    email = "cen.zop@gmail.com")
as necessary.
Package required but not available: ‘qgraph’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mixOmics’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjoern",
                    family = "Bornkamp",
                    role = c("aut", "cre"),
                    email = "bbnkmp@mail.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iRNGStream.R’ ‘r_to_py.iteror.Rd’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘John A. Ramey <johnramey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "A."),
                      family = "Ramey",
                      role = c("aut", "cre"),
                      email = "johnramey@gmail.com"),
               person(given = "Kayla",
                      family = "Schaefer",
                      role = "aut",
                      email = "kschaefer.tx@gmail.com"))
as necessary.
Maintainer: ‘Steve Weston <stephen.b.weston@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steve",
                      family = "Weston",
                      role = c("aut", "cre"),
                      email = "stephen.b.weston@gmail.com"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Matthew Smith <matt_smith.90@hotmail.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Smith",
                    role = c("aut", "cre"),
                    email = "matt_smith.90@hotmail.co.uk")
as necessary.
Package required but not available: ‘xergm.common’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘colourpicker’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nanne Aben <nanne.aben@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nanne",
                    family = "Aben",
                    role = c("aut", "cre"),
                    email = "nanne.aben@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Thomas Bishop <tombishopemail@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Bishop",
                    role = c("aut", "cre"),
                    email = "tombishopemail@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘itrax_munsell.R’
Maintainer: ‘Patrick English <p.english@exeter.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "English",
                    role = c("aut", "cre"),
                    email = "p.english@exeter.ac.uk")
as necessary.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_conservation_status.R’ ‘get_vernacularname.R’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bo Zhang <bozhan@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "bozhan@wharton.upenn.edu")
as necessary.
Maintainer: ‘Yiqing Xu <yiqingxu@stanford.edu>’

The Description field contains
  <arXiv:2303.11399>, including bootstrapped confidence intervals,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Running ‘testthat.R’ [12s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(IVDML)
  > 
  > test_check("IVDML")
  Saving _problems/test-fit_IVDML-86.R
  Saving _problems/test-fit_IVDML-98.R
  Fitted IVDML object
  Machine learning method:  gam 
  IV methods:  linearIV, mlIV 
  Number of cross-fitting sample splits:  1[ FAIL 2 | WARN 6 | SKIP 0 | PASS 31 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-fit_IVDML.R:86:3'): fit_IVDML works when ml_par are set globally. ──
  Expected `fit_IVDML(...)` not to throw any errors.
  Actually got a <getvarError> with message:
    argument "y" is missing, with no default
  ── Failure ('test-fit_IVDML.R:98:3'): fit_IVDML works when ml_par is set differently for the different nuisance functions. ──
  Expected `fit_IVDML(...)` not to throw any errors.
  Actually got a <getvarError> with message:
    argument "y" is missing, with no default
  
  [ FAIL 2 | WARN 6 | SKIP 0 | PASS 31 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘rgl’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Bo Zhang <bozhan@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "bozhan@wharton.upenn.edu")
as necessary.

The Description field contains
  identification assumptions. Please refer to <arXiv:2002.02579> for more
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hyunseung Kang <hyunseung@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyunseung",
                      family = "Kang",
                      role = c("aut", "cre"),
                      email = "hyunseung@stat.wisc.edu"),
               person(given = "Yang",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Qingyuan",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Dylan",
                      family = "Small",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'gurobi', 'cplexAPI', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) sTsls.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{pi}{the matrix E[XZ']E[ZZ']^{-1}}
       |                                   ^
checkRd: (-1) sTslsSplines.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{pi}{matrix, corresponds to E[XZ']E[ZZ']^{-1}, the first stage
       |                                               ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'ggiraph', 'knitr'

Package suggested but not available for checking: ‘quarto’

VignetteBuilder package required for checking but not installed: ‘quarto’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'flextable', 'gt'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'bootnet', 'psychonetrics', 'graphicalVAR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'modelsummary', 'gt'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Andrew Ying <aying9339@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Ying",
                    role = c("aut", "cre"),
                    email = "aying9339@gmail.com")
as necessary.
Specified C++11: support will be removed soon
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Arvid Sjolander <arvid.sjolander@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arvid",
                      family = "Sjolander",
                      role = c("aut", "cre"),
                      email = "arvid.sjolander@ki.se"),
               person(given = "Elisabeth",
                      family = "Dahlqwist",
                      role = "aut"),
               person(given = "Torben",
                      family = "Martinussen",
                      role = "aut"))
as necessary.
Maintainer: ‘Tri Ha Minh Nguyen <tringuyen_2023@depauw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tri", "Ha", "Minh", "Nguyen", "Jyotirmoy", "Sarkar", "Mamunur"),
                      family = "Rashid",
                      role = "aut"),
               person(given = c("Tri", "Ha", "Minh"),
                      family = "Nguyen",
                      role = "cre",
                      email = "tringuyen_2023@depauw.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Heng",
                      family = "Shu",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'kableExtra', 'shiny.i18n', 'keyring'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Neo Christopher Chung <nchchung@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Neo", "Christopher"),
                      family = "Chung",
                      role = c("aut", "cre"),
                      email = "nchchung@gmail.com"),
               person(given = "Błażej",
                      family = "Miasojedow",
                      role = "aut",
                      email = "bmiasojedow@gmail.com"),
               person(given = "Michał",
                      family = "Startek",
                      role = "aut",
                      email = "M.Startek@mimuw.edu.pl"),
               person(given = "Anna",
                      family = "Gambin",
                      role = "aut",
                      email = "aniag@mimuw.edu.pl"))
as necessary.
Specified C++11: support will be removed soon
checkRd: (-1) jaccard.test.Rd:41: Lost braces; missing escapes or markup?
    41 | The {bootstrap} method uses resampling with replacement binary vectors to compute a p-value (see optional arguments).
       |     ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘fBasics’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dmitry Prokopenko <dmitry.prokopenko@uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dmitry",
                    family = "Prokopenko",
                    role = c("aut", "cre"),
                    email = "dmitry.prokopenko@uni-bonn.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'targets', 'tarchetypes'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'visNetwork'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: ‘kableExtra’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'keras', 'tensorflow'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'ggExtra', 'bookdown', 'kableExtra'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘openNLP’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@R-project.org>’

Package has FOSS license, installs .class/.jar but has no 'java' directory.
Package required but not available: ‘rJava’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Noelia Otero <noeli1680@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Noelia",
                    family = "Otero",
                    role = c("aut", "cre"),
                    email = "noeli1680@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Shahla Faisal <shahla_ramzan@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shahla",
                    family = "Faisal",
                    role = c("aut", "cre"),
                    email = "shahla_ramzan@yahoo.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘jdenticon.R’
Packages required but not available: 'bookdown', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Beilun Wang <bw4mw@virginia.edu>’

The Description field contains
  <arXiv:1806.00548>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/QData/jeek
which should likely be
  https://github.com/QData/jeek/issues
instead.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'clonevol'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Package required but not available: ‘modeest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aron Eklund <eklund@cbs.dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qiyuan",
                      family = "Li",
                      role = "aut"),
               person(given = "Aron",
                      family = "Eklund",
                      role = c("aut", "cre"),
                      email = "eklund@cbs.dtu.dk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'fairness', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'rgl', 'RockFab'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Markus Helbig <mhelbig81@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Helbig",
                      role = c("aut", "cre"),
                      email = "mhelbig81@googlemail.com"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "aut"),
               person(given = "Ian",
                      family = "Fellows",
                      role = "aut"))
as necessary.
Packages required but not available: 'rJava', 'JavaGD'

Package suggested but not available for checking: ‘XLConnect’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rlist’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘James Balamuta <balamut2@illinois.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) jointLPM.Rd:298: Lost braces; missing escapes or markup?
   298 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2}*I_{n+1}(Y(t)),
       |                                                        ^
checkRd: (-1) jointLPM.Rd:298: Lost braces; missing escapes or markup?
   298 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2}*I_{n+1}(Y(t)),
       |                                                                ^
checkRd: (-1) jointLPM.Rd:299: Lost braces; missing escapes or markup?
   299 | where I_1,...,I_{n+1} is the basis of quadratic I-splines. To constraint the
       |                 ^
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'FastJM', 'rstanarm', 'jmBIG'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rstanarm', 'FastJM'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ka Yui Karl Wu <karlwuky@suss.edu.sg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ka", "Yui", "Karl"),
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "karlwuky@suss.edu.sg")
as necessary.
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                          ^
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                                                                               ^
Maintainer: ‘J. Patrick Meyer <meyerjp3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("J.", "Patrick"),
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "support@itemanalysis.com")
as necessary.
Maintainer: ‘Shanpeng Li <lishanpeng0913@ucla.edu>’

The Description field contains
  <arXiv:2301.06584>.  The proposed method models the within-subject
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘timeROC’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zeng Xianli <a0123862@u.nus.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeng",
                      family = "Xianli",
                      role = c("aut", "cre"),
                      email = "a0123862@u.nus.edu"),
               person(given = "Hang",
                      family = "Weiqiang",
                      role = "aut",
                      email = "e0010758@u.nus.edu"))
as necessary.
Maintainer: ‘TszKin Julian Chan <ctszkin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("TszKin", "Julian"),
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "ctszkin@gmail.com")
as necessary.
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Steven T. Garren <GARRENST@JMU.EDU>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "T."),
                    family = "Garren",
                    role = c("aut", "cre"),
                    email = "garrenst@jmu.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Philip Pallmann <p.pallmann@lancaster.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Markus Burkhardt <markus.burkhardt@psychologie.tu-chemnitz.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘TODAM2.Rd’:
    https://doi.org/10.1006/jmps.2000.1339
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'remMap'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helpfunctions_melt.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Maciej Beręsewicz <maciej.beresewicz@ue.poznan.pl>’

The Description field contains
  details <arXiv:2308.13281>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takeshi",
                    family = "Emura",
                    role = c("aut", "cre"),
                    email = "takeshiemura@gmail.com")
as necessary.
Maintainer: ‘Cedric Gouy-Pailler <cedric.gouypailler@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cedric",
                    family = "Gouy-Pailler",
                    role = c("aut", "cre"),
                    email = "cedric.gouypailler@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'rChoiceDialogs', 'rJava'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Matteo Quartagno <m.quartagno@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matteo",
                      family = "Quartagno",
                      role = c("aut", "cre"),
                      email = "m.quartagno@ucl.ac.uk"),
               person(given = "James",
                      family = "Carpenter",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Johannes Breidenbach <job@nibio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Breidenbach",
                    role = c("aut", "cre"),
                    email = "job@nibio.no")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'badger', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ashwini Maurya <mauryaas@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashwini",
                    family = "Maurya",
                    role = c("aut", "cre"),
                    email = "mauryaas@msu.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘leaflet’

Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hengrui Cai <hcai5@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hengrui",
                      family = "Cai",
                      role = c("aut", "cre"),
                      email = "hcai5@ncsu.edu"),
               person(given = "Chengchun",
                      family = "shi",
                      role = "aut",
                      email = "cshi4@ncsu.edu"),
               person(given = "Rui",
                      family = "Song",
                      role = "aut",
                      email = "rsong@ncsu.edu"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut",
                      email = "wlu4@ncsu.edu"))
as necessary.
Maintainer: ‘Daniel R. Miranda-Esquivel <dmiranda@uis.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "R."),
                    family = "Miranda-Esquivel",
                    role = c("aut", "cre"),
                    email = "dmiranda@uis.edu.co")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘factoextra’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Navid Ahmadinejad <navidfr@asu.edu>’

The Description field contains
  <arXiv:2109.01306>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'kableExtra', 'rmarkdown', 'bookdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

Packages suggested but not available for checking:
  'covr', 'mediation', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'flextable', 'Hmisc', 'timeROC', 'riskRegression'

Packages suggested but not available for checking:
  'shinytest', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘yaml’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mauricio Santelices <m.santelicesa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauricio",
                    family = "Santelices",
                    role = c("aut", "cre"),
                    email = "m.santelicesa@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'weights', 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: ‘rstanarm’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Stephen H-T. Lihn <stevelihn@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘jubilee-package.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘jubilee.ols.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘jubilee.predict.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘tri.wave-class.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘triangle.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
Package required but not available: ‘yaml’

Packages suggested but not available for checking: 'knitr', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release juicr (2017 - 2021)
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'DiagrammeR', 'yaml', 'yum'

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘just.install.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'rms'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘usethis’

Packages suggested but not available for checking: 'covr', 'knitr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'knitr', 'rmarkdown'

Packages suggested but not available for checking:
  'formattable', 'sparkline'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gerrit Eichner <gerrit.eichner@math.uni-giessen.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘kader.Rd’:
    http://dx.doi.org/10.1016/j.spl.2011.01.013
    http://dx.doi.org/10.1016/j.jspi.2012.03.011
    http://dx.doi.org/10.1080/10485252.2012.760737
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'kanjistat.data', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kantorovich_ompr.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Hannah Franziska Löchel <loechelh@mathematik.uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dominik",
                      family = "Eger",
                      role = "aut"),
               person(given = c("Hannah", "Franziska"),
                      family = "Löchel",
                      role = c("aut", "cre"),
                      email = "loechelh@mathematik.uni-marburg.de"))
as necessary.
Maintainer: ‘Muammer Albayrak <m.albayrak@ktu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Muammer",
                    family = "Albayrak",
                    role = c("aut", "cre"),
                    email = "m.albayrak@ktu.edu.tr")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kappa_inference.R’
Maintainer: ‘Frédéric Santos <frederic.santos@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frédéric",
                    family = "Santos",
                    role = c("aut", "cre"),
                    email = "frederic.santos@u-bordeaux.fr")
as necessary.
Maintainer: ‘Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Grabisch",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Kojadinovic",
                      role = c("aut", "cre"),
                      email = "ivan.kojadinovic@univ-pau.fr"),
               person(given = "Patrick",
                      family = "Meyer.",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael A Rotondi <mrotondi@yorku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "A"),
                    family = "Rotondi",
                    role = c("aut", "cre"),
                    email = "mrotondi@yorku.ca")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'flextable'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) get.fit.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:57-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:61-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Packages required but not available: 'MVN', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Wiemann <wiemann@uchicago.edu>’

The Description field contains
  (2023) <arXiv:2311.17021> for expectation function estimation
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yves Ismael Ngounou Bakam <yvesngounou20@gmail.com>’

The Description field contains
  Bakam and Denys Pommeret (2022) <arXiv:2112.05623> and Yves I. Ngounou
  Bakam and Denys Pommeret (2022) <arXiv:2211.06338>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kristof Meers <kristof.meers+cran@kuleuven.be>’

The Description field contains
  detection proposed by Arlot et al. (2012) <arXiv:1202.3878> is then
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Karne Chaithanya Sai <karnechaithanyasai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Karne", "Chaithanya"),
                    family = "Sai",
                    role = c("aut", "cre"),
                    email = "karnechaithanyasai@gmail.com")
as necessary.
Package required but not available: ‘rhandsontable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karne Chaithanya Sai <karnechaithanyasai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Karne", "Chaithanya"),
                    family = "Sai",
                    role = c("aut", "cre"),
                    email = "karnechaithanyasai@gmail.com")
as necessary.
Package required but not available: ‘rhandsontable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘univariateML’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotly', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) kdist.Rd:14: Lost braces; missing escapes or markup?
    14 | The {kdist} functions dk, pk, qk and rk, calculates the K-distribution
       |     ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

Package suggested but not available for checking: ‘lintr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Iago Giné-Vázquez <iago.gin-vaz@protonmail.com>’

The Description field contains
  in Arsalane Chouaib Guidoum (2020) <arXiv:2012.06102> [stat.CO]).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Paavo Jumppanen<paavo.jumppanen@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paavo",
                    family = "Jumppanen",
                    role = c("aut", "cre"),
                    email = "paavo.jumppanen@csiro.au")
as necessary.
Maintainer: ‘Claudia Vitolo <cvitolodev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudia",
                      family = "Vitolo",
                      role = c("aut", "cre"),
                      email = "cvitolodev@gmail.com"),
               person(given = "Allan",
                      family = "Tucker",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Russell",
                      role = "aut"))
as necessary.

The Description field contains
  http://www.brunel.ac.uk/ife/britishcouncil). It refers to the
Please enclose URLs in angle brackets (<...>).
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Mateusz Staniak <mateusz.staniak@math.uni.wroc.pl>’

The Description field contains
  Jasiulis-Gołdyn (2014) <arXiv:1412.0220>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘A.I. McLeod <aimcleod@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "A.I.",
                    family = "McLeod",
                    role = c("aut", "cre"),
                    email = "aimcleod@uwo.ca")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  MannKendall.Rd: tsboot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
'library' or 'require' calls not declared from:
  ‘MCMCglmm’ ‘car’ ‘coda’ ‘emmeans’ ‘lattice’ ‘outliers’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Björn Andersson <bjoern.h.andersson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'tensorflow', 'tfruns'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tfdatasets'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keras3’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tensorflow', 'tfruns'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tfdatasets'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'tensorflow', 'plotly', 'tidyjson', 'echarts4r'

Packages suggested but not available for checking:
  'keras3', 'knitr', 'tfdatasets', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hoseung Song <hsong3@fredhutch.org>’

The Description field contains
  conditions.  Song, H. and Wu, M.C. (2023) <arXiv:2307.15268>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yi Yang <yiyang@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yiyang@umn.edu"),
               person(given = "Teng",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut"))
as necessary.
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Maintainer: ‘Tymoteusz Wolodzko <twolodzko+kernelboot@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tymoteusz",
                    family = "Wolodzko",
                    role = c("aut", "cre"),
                    email = "twolodzko+kernelboot@gmail.com")
as necessary.
Maintainer: ‘Michel Ballings <Michel.Ballings@GMail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                          ^
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                                                                                                   ^
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brian McGuire <mcguirebc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Angelo",
                      family = "Mazza",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Punzo",
                      role = "aut"),
               person(given = "Brian",
                      family = "McGuire",
                      role = c("aut", "cre"),
                      email = "mcguirebc@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  (2022) <arXiv:2206.01853>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  <arXiv:2011.06127>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available:
  'config', 'DT', 'golem', 'plotly', 'reactable', 'visNetwork', 'yaml'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'shinytest'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘quanteda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiaomeng Yuan <xiaomeng.yuan@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaomeng",
                      family = "Yuan",
                      role = c("aut", "cre"),
                      email = "xiaomeng.yuan@stjude.org"),
               person(given = "Chen",
                      family = "Li",
                      role = "aut"),
               person(given = "Hongying",
                      family = "Sun",
                      role = "aut"),
               person(given = "Li",
                      family = "Tang",
                      role = "aut"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"))
as necessary.
Package required but not available: ‘textstem’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Thoralf Mildenberger <mild@zhaw.ch>’

The Description field contains
  <arXiv:2308.13383>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Weihua An <weihua.an@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Weihua", "An;", "Yu-Hsin"),
                      family = "Liu",
                      role = "aut"),
               person(given = "Weihua",
                      family = "An",
                      role = "cre",
                      email = "weihua.an@emory.edu"))
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Jon",
                      family = "Griffiths",
                      role = "aut"))
as necessary.
Package required but not available: ‘yaml’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Josh Gilfillan <joshua.i.gilfillan+keyringr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josh",
                    family = "Gilfillan",
                    role = c("aut", "cre"),
                    email = "joshua.i.gilfillan+keyringr@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) useKeys.Rd:13: Lost braces; missing escapes or markup?
    13 | This function adds the {keys} dependencies to your application
       |                        ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Max Candocia <maxcandocia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Candocia",
                    role = c("aut", "cre"),
                    email = "maxcandocia@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor Changes
Maintainer: ‘Kyle Nickodem <kyle.nickodem@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kyle",
                      family = "Nickodem",
                      role = c("aut", "cre"),
                      email = "kyle.nickodem@gmail.com"),
               person(given = "Peter",
                      family = "Halpin",
                      role = "aut"))
as necessary.
Packages required but not available: 'flextable', 'knitr', 'rmarkdown'

Package suggested but not available for checking: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/KFAS.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
checkRd: (-1) kfda.Rd:26: Lost braces
    26 |  \item{kpca.train}{An object of class "kpca". It has results of \code{kpca} function. (see{\code{\link[kernlab]{kpca}}} (in package \pkg{kernlab}))}
       |                                                                                           ^
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Koohafkan",
                    role = c("aut", "cre"),
                    email = "michael.koohafkan@gmail.com")
as necessary.
Package required but not available: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Isabelle Sanchez <isabelle.sanchez@inrae.fr>’

The Description field contains
  e-Print: <arXiv:2208.00961>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                          ^
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                                  ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Rou Zhong <zhong_rou@163.com>’

The Description field contains
  Shishi Liu, Haocheng Li, Jingxiao Zhang. (2021) <arXiv:2102.01286>. Rou
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fdapace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘sgraph’

Packages suggested but not available for checking:
  'DT', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'covr', 'DT', 'gt', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Victor Moreno <v.moreno@iconcologia.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Victor",
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "v.moreno@iconcologia.net"),
               person(given = "Nilanjan",
                      family = "Chatterjee",
                      role = "aut"),
               person(given = "Bhramar",
                      family = "Mukherjee",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Pablo Rodriguez-Sanchez <pablo.rodriguez.sanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Rodriguez-Sanchez",
                      role = c("aut", "cre"),
                      email = "pablo.rodriguez.sanchez@gmail.com",
                      comment = "https://pabrod.github.io"),
               person(given = c("Sanne", "J.", "P."),
                      family = "van den Berg",
                      role = "aut",
                      comment = "https://www.wur.nl/en/Persons/Sanne-dr.-SJP-Sanne-van-den-Berg.htm"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'config', 'gt'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'ribd', 'pedtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Muschelli <muschellij2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Muschelli",
                    role = c("aut", "cre"),
                    email = "muschellij2@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘balance.R’ ‘data.R’ ‘order.R’ ‘revise.R’ ‘utils.R’
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/ResponseModels-knitr.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'quarto'

VignetteBuilder package required for checking but not installed: ‘quarto’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Xiang Lyu <xianglyu@berkeley.edu>’

The Description field contains
  Nonparametric Additive Models”. arXiv preprint <arXiv:2105.11659>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Uwe Ligges <ligges@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Roever",
                      role = "aut"),
               person(given = "Nils",
                      family = "Raabe",
                      role = "aut"),
               person(given = "Karsten",
                      family = "Luebke",
                      role = "aut"),
               person(given = "Uwe",
                      family = "Ligges",
                      role = c("aut", "cre"),
                      email = "ligges@statistik.tu-dortmund.de"),
               person(given = "Gero",
                      family = "Szepannek",
                      role = "aut"),
               person(given = "Marc",
                      family = "Zentgraf",
                      role = "aut"),
               person(given = "David",
                      family = "Meyer",
                      role = "aut"))
as necessary.
checkRd: (-1) klausuR.answ-class.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:18-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:110-111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:112-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:114-116: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:117-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:119-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:121-123: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:124-126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:147: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:152-155: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Alessandra Cabassi <alessandra.cabassi@mrc-bsu.cam.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'forrel', 'gt', 'pedFamilias', 'pedprobr', 'pedtools', 'verbalisr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown', 'RGeostats'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ralf",
                      family = "Strobl",
                      role = "aut",
                      email = "rstrobl@ibe.med.uni-muenchen.de"),
               person(given = "Tobias",
                      family = "Verbeke",
                      role = "cre",
                      email = "tobias.verbeke@openanalytics.eu"))
as necessary.
checkRd: (-1) plotkmc.Rd:21: Lost braces; missing escapes or markup?
    21 |     list of two functions,flist=list( f1=function( x ) { x } ,f2=function( x ) { x^2 } )  
       |                                                        ^
checkRd: (-1) plotkmc.Rd:21: Lost braces; missing escapes or markup?
    21 |     list of two functions,flist=list( f1=function( x ) { x } ,f2=function( x ) { x^2 } )  
       |                                                                                ^
Maintainer: ‘Zhen Huang <zh2395@columbia.edu>’

The Description field contains
  Sen (2022) <arXiv:2210.00634>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘factoextra’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Antoine Godichon-Baggioni <antoine.godichon_baggioni@upmc.fr>’

The Description field contains
  K-medians" <arXiv:2209.03597> Vardi, Y. and Zhang, C.-H. (2000). "The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Shaun Wilkinson <shaunpwilkinson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘venneuler’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arthur",
                    family = "Allignol",
                    role = c("aut", "cre"),
                    email = "arthur.allignol@gmail.com")
as necessary.
Packages required but not available:
  'clv', 'rgl', 'longitudinalData', 'kml'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'clv', 'longitudinalData'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pammtools’

Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chin Soon Lim <chinsoon12@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chin", "Soon"),
                    family = "Lim",
                    role = c("aut", "cre"),
                    email = "chinsoon12@hotmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chinsoon12/KnapsackSampling
which should likely be
  https://github.com/chinsoon12/KnapsackSampling/issues
instead.
Maintainer: ‘Alan Tseng <alan.tseng@alum.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Tseng",
                    role = c("aut", "cre"),
                    email = "alan.tseng@alum.utoronto.ca")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘BiodiversityR’

Packages suggested but not available for checking:
  'kadmin', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘knitcitations-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.bibtex
> ### Title: write a bibtex file
> ### Aliases: write.bibtex
> 
> ### ** Examples
> 
>  tmp <- tempfile(fileext=".bib")
>  write.bibtex(c(citation("knitr"),
+                 citation("knitcitations"),
+                 citation("httr")),
+                file = tmp)
Error in citation("knitr") : there is no package called ‘knitr’
Calls: write.bibtex -> citation
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jim Hester <james.f.hester@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jim",
                    family = "Hester",
                    role = c("aut", "cre"),
                    email = "james.f.hester@gmail.com")
as necessary.
Packages required but not available: 'knitr', 'rmarkdown'

Package suggested but not available for checking: ‘roxygen2’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

Packages suggested but not available for checking:
  'htmlwidgets', 'JuliaCall', 'rgl', 'rmarkdown', 'targets'

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/docco-classic.Rmd’
   ‘inst/doc/docco-linear.Rmd’
   ‘inst/doc/knit_print.Rmd’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'knitr', 'yaml'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Specified C++11: support will be removed soon
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Packages required but not available: 'rmarkdown', 'rhandsontable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matthew Trupiano <matthew.trupiano.professional@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Trupiano",
                    role = c("aut", "cre"),
                    email = "matthew.trupiano.professional@gmail.com")
as necessary.

The Description field contains
  similarity metric please see Trupiano (2021) <arXiv:2112.06266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) knockoff.Rd:22-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knockoff.Rd:25-27: Lost braces in \itemize; meant \describe ?
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Zihuai He <zihuai@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@stanford.edu")
as necessary.
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Castor", "Guisande"),
                      family = "Gonzalez",
                      role = c("aut", "cre"),
                      email = "castor@uvigo.es"),
               person(given = c("Jorge", "M."),
                      family = "Lobo",
                      role = "aut"))
as necessary.
checkRd: (-1) MapPolygon.Rd:20: Lost braces
    20 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
checkRd: (-1) SurveyQ.Rd:26: Lost braces
    26 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Koboconnect.R’ ‘other.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Mikhail V. Matz <matz@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "V."),
                    family = "Matz",
                    role = c("aut", "cre"),
                    email = "matz@utexas.edu")
as necessary.
Maintainer: ‘Ron Wehrens <ron.wehrens@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ron",
                      family = "Wehrens",
                      role = c("aut", "cre"),
                      email = "ron.wehrens@gmail.com"),
               person(given = "Johannes",
                      family = "Kruisselbrink",
                      role = "aut"))
as necessary.
'library' or 'require' calls not declared from:
  ‘RColorBrewer’ ‘lattice’
'data(package=)' call not declared from: ‘vegan’
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'koRpus.lang.de', 'koRpus.lang.es',
  'koRpus.lang.fr', 'koRpus.lang.it', 'koRpus.lang.nl',
  'koRpus.lang.pt', 'koRpus.lang.ru'

Package which this enhances but not available for checking: ‘rkward’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Clemence Karmann <clemence.karmann@gmail.com>’

The Description field contains
  (2019) <arXiv:1907.03153>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jiwoong Kim <jwboys26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiwoong",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jwboys26atgmail.com")
as necessary.
Specified C++11: support will be removed soon
Maintainer: ‘Eric Golinko <egolinko@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eric",
                    family = "Golinko",
                    role = c("aut", "cre"),
                    email = "egolinko@gmail.com")
as necessary.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhen Huang <zh2395@columbia.edu>’

The Description field contains
  using kernels and geometric graphs” <arXiv:2010.01768>, and it is
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘findk.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘findpolypeaks.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘genpolygon.Rd’:
    https://doi.org/10.24925/turjaf.v5i4.315-320.1056
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘kpeaks-package.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘plotpolygon.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
  File ‘rmshoulders.Rd’:
    https://doi.org/10.17700/jai.2018.9.2.442
    https://doi.org/10.1109/IDAP.2018.8620896
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'DT', 'flexdashboard', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jocelyn T. Chi <jtchi@ncsu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Matteo Provenzano <matteo.provenzano@alephdue.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matteo",
                    family = "Provenzano",
                    role = c("aut", "cre"),
                    email = "matteo.provenzano@alephdue.com")
as necessary.
checkRd: (-1) compose.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) compose.Rd:14: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Jason S. Byers <jaybyers55@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jason", "S."),
                      family = "Byers",
                      role = c("aut", "cre"),
                      email = "jaybyers55@gmail.com"),
               person(family = "Le Bao",
                      role = "aut"),
               person(given = "Jamie",
                      family = "Carson",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Gill",
                      role = "aut"))
as necessary.
Maintainer: ‘Omar E. Olmedo <omareolmedo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Omar", "E."),
                    family = "Olmedo",
                    role = c("aut", "cre"),
                    email = "omareolmedo@gmail.com")
as necessary.
checkRd: (-1) EGIparallel.Rd:60: Lost braces; missing escapes or markup?
    60 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion.
       |                                    ^
checkRd: (-1) max_sur_parallel.Rd:29: Lost braces; missing escapes or markup?
    29 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion. 
       |                                    ^
checkRd: (-1) max_timse_parallel.Rd:30: Lost braces; missing escapes or markup?
    30 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion. 
       |                                    ^
checkRd: (-1) max_vorob_parallel.Rd:30: Lost braces; missing escapes or markup?
    30 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion.
       |                                    ^
checkRd: (-1) print_uncertainty_nd.Rd:72: Lost braces
    72 | Optional argument. When set to code{NULL} (default) the function performs the projections on plans spanned by each pair (i,j) of dimension. Otherwise, the argument is an array of size 2 corresponding to the dimensions spanning the (only) plan on which the projection is performed.
       |                                    ^
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Hughes",
                    role = c("aut", "cre"),
                    email = "drjphughesjr@gmail.com")
as necessary.
Maintainer: ‘Kridsadakorn Chaichoompu <kridsadakorn@biostatgen.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jens Hainmueller <jhain@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jens", "Hainmueller", "Chad", "Hazlett"),
                      family = "(UCLA)",
                      role = "aut",
                      comment = "UCLA"),
               person(given = "Jens",
                      family = "Hainmueller",
                      role = "cre",
                      email = "jhain@stanford.edu"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘krls.Rd’:
    \keyword{multivariate, smooth, kernels, machine le [TRUNCATED]
checkRd: (-1) Predict_kernel_Ridge_MM.Rd:45: Lost braces; missing escapes or markup?
    45 |   and alpha_train is the BLUP of alpha for the model, i.e. alpha_train=Cov(alpha,Y_train)*Var(Y_train)^{-1}*(Y_train - E[Y_train]) }
       |                                                                                                        ^
Maintainer: ‘Dr. Fayed Alshammri <fayed333@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fayed",
                      family = "Alshammri",
                      role = "aut"),
               person(given = c("Dr.", "Fayed"),
                      family = "Alshammri",
                      role = "cre",
                      email = "fayed333@hotmail.com"))
as necessary.
Maintainer: ‘Phil Novack-Gottshall <pnovack-gottshall@ben.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Phil",
                      family = "Novack-Gottshall",
                      role = c("aut", "cre"),
                      email = "pnovack-gottshall@ben.edu"),
               person(given = c("Steve", "C."),
                      family = "Wang",
                      role = "aut"))
as necessary.
checkRd: (-1) ks_test_stat.Rd:14: Lost braces
    14 | are valid. See /code{LcKS} for accepted functions.}
       |                     ^
Maintainer: ‘Min Hyung Kang <Minhyung.Daniel.Kang@gmail.com>’

The Description field contains
  <arXiv:1602.03253>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Danica D. Wiredja <dwiredja@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Danica", "D."),
                    family = "Wiredja",
                    role = c("aut", "cre"),
                    email = "dwiredja@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Found the following files/directories:
  ‘KSEA Bar Plot.tiff’ ‘KSEA Kinase Scores.csv’
  ‘KSEA.Merged.Heatmap.png’ ‘Kinase-Substrate Links.csv’
Maintainer: ‘Daniel Rodriguez <daniel.rodriguez.perez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Rodriguez",
                    role = c("aut", "cre"),
                    email = "daniel.rodriguez.perez@gmail.com")
as necessary.
Maintainer: ‘Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dimitrina", "S."),
                      family = "Dimitrova",
                      role = c("aut", "cre"),
                      email = "D.Dimitrova@city.ac.uk"),
               person(given = "Yun",
                      family = "Jia",
                      role = "aut",
                      email = "yunjia2019@gmail.com"),
               person(given = c("Vladimir", "K."),
                      family = "Kaishev",
                      role = "aut",
                      email = "Vladimir.Kaishev.1@city.ac.uk"),
               person(given = "Senren",
                      family = "Tan",
                      role = "aut",
                      email = "raymondtsrtsr@outlook.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kei Nakagawa <kei.nak.0315@gmail.com>’

The Description field contains
  Anava and Levy (2016) <arXiv:1701.07266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Westa Domanova <w.domanova@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Westa",
                    family = "Domanova",
                    role = c("aut", "cre"),
                    email = "w.domanova@gmail.com")
as necessary.
Maintainer: ‘Giuseppe Guarino <giuseppe.guarino@rete.basilicata.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elvira", "Di"),
                      family = "Nardo",
                      role = "aut",
                      email = "elvira.dinardo@unito.it"),
               person(given = "Giuseppe",
                      family = "Guarino",
                      role = c("aut", "cre"),
                      email = "giuseppe.guarino@rete.basilicata.it"))
as necessary.

The Description field contains
  (2009) <arXiv:0807.5008>, <arXiv:1012.6008>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘kstMatrix’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Juan Domingo Gonzalez <juanrst@hotmail.com>’

The Description field contains
  <arxiv:1906.08198>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Miguel Rodriguez-Rosa <miguel_rosa90@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miguel",
                    family = "Rodriguez-Rosa",
                    role = c("aut", "cre"),
                    email = "miguel_rosa90@usal.es")
as necessary.
Maintainer: ‘Carl Witthoft <cellocgw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carl",
                    family = "Witthoft",
                    role = c("aut", "cre"),
                    email = "cellocgw@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ying Ruan <y.ruan.16@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ying",
                    family = "Ruan",
                    role = c("aut", "cre"),
                    email = "y.ruan.16@ucl.ac.uk")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'g6R', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Serguei Sokol <sokol@insa-toulouse.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Serguei",
                    family = "Sokol",
                    role = c("aut", "cre"),
                    email = "sokol@insa-toulouse.fr")
as necessary.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Brian Close <brian.close@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brian",
                      family = "Close",
                      role = c("aut", "cre"),
                      email = "brian.close@gmail.com"),
               person(given = "Igor",
                      family = "Zurbenko",
                      role = "aut",
                      email = "IZurbenko@albany.edu"),
               person(given = "Mingzeng",
                      family = "Sun",
                      role = "aut",
                      email = "msun@albany.edu"))
as necessary.
Maintainer: ‘Wenchuan Guo <wguo007@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wenchuan",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "wguo007@ucr.edu"),
               person(given = "Shujie",
                      family = "Ma",
                      role = "aut"),
               person(given = "Zhenqiu",
                      family = "Liu",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) GenSyntheticLogistic.Rd:46: Lost braces; missing escapes or markup?
    46 | 3) Every coordinate yi of the outcome vector y exists in {-1, 1}^n is sampled 
       |                                                          ^
checkRd: (-1) L0Learn-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:25: Lost braces in \itemize; meant \describe ?
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Maoran Xu <maoranxu@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maoran",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "maoranxu@ufl.edu"),
               person(given = c("Leo", "L."),
                      family = "Duan",
                      role = "aut"))
as necessary.

The Description field contains
  regression, as introduced by Xu and Duan (2020) <arXiv:2006.01340>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhao Li <lizhao.informatics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhao",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizhao.informatics@gmail.com"),
               person(given = "Peng",
                      family = "Yu",
                      role = c("aut", "cre")))
as necessary.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'quarto', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) CreateDataSet.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CreateDataSet.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CreateDataSet.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindElement.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindElement.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindNbrClusters.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindNbrClusters.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindStructure.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindStructure.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘John Ehrlinger <john.ehrlinger@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) predict.l2boost.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Package required but not available: ‘fGarch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jocelyn Chi <jocetchi@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Rui Lin <ruilin1081@gmail.com>’

The Description field contains
  <arXiv:2208.13074>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'printr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Unknown package ‘optpart’ in Rd xrefs
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking: 'blastula', 'keyring'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nuno Sempere <nuno.semperelh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justin",
                      family = "Talbot,",
                      role = "aut"),
               person(given = "Nuno",
                      family = "Sempere",
                      role = "cre",
                      email = "nuno.semperelh@gmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'gt', 'knitr', 'rmarkdown', 'spelling'

Package which this enhances but not available for checking: ‘memisc’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

Packages suggested but not available for checking:
  'roxygen2', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_base_data_frame.R’ ‘as_base_data_frame2.R’
    ‘as_labeled_data_frame.R’ ‘irregular2.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Panagiotis Papastamoulis <papapast@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panagiotis",
                    family = "Papastamoulis",
                    role = c("aut", "cre"),
                    email = "papapast@yahoo.gr")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'Hmisc', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Author field differs from that derived from Authors@R
  Author:    ‘Alex Searle-Barnes [aut, cre] (<https://orcid.org/0000-0003-0389-7717>, https://github.com/alexsb1)’
  Authors@R: ‘Alex Searle-Barnes [aut, cre] (ORCID: <https://orcid.org/0000-0003-0389-7717>, URL: https://github.com/alexsb1)’
checkRd: (-1) ln_quantile_value.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Luisa Franconi <franconi@istat.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniela",
                      family = "Ichim",
                      role = "aut"),
               person(given = "Luisa",
                      family = "Franconi",
                      role = c("aut", "cre"),
                      email = "franconi@istat.it"),
               person(given = "Michele",
                      family = "D'Alo'",
                      role = "aut"),
               person(given = "Guido",
                      family = "van den Heuvel",
                      role = "aut"))
as necessary.
Package required but not available: ‘tmap’

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VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Agnese Vardanega <avardanega@unite.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Agnese",
                    family = "Vardanega",
                    role = c("aut", "cre"),
                    email = "avardanega@unite.it")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘Rcmdr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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Maintainer: ‘Cristhian Paredes <craparedesca@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristhian",
                      family = "Paredes",
                      role = c("aut", "cre"),
                      email = "craparedesca@unal.edu.co"),
               person(given = "Jesús",
                      family = "Ágreda",
                      role = "aut"))
as necessary.
Cannot process vignettes
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Maintainer: ‘Stefano M. Iacus <siacus@iq.harvard.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Stefano",
                      family = "M.Iacus",
                      role = "aut",
                      email = "siacus@iq.harvard.edu"),
               person(given = "Guido",
                      family = "Masarotto",
                      role = "aut",
                      email = "guido@sirio.stat.unipd.it"),
               person(given = c("Stefano", "M."),
                      family = "Iacus",
                      role = "cre",
                      email = "siacus@iq.harvard.edu"))
as necessary.
Maintainer: ‘Stanley E. Lazic <stan.lazic@cantab.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stanley", "E."),
                    family = "Lazic",
                    role = c("aut", "cre"),
                    email = "stan.lazic@cantab.net")
as necessary.
Cannot process vignettes
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Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_gaps_perc.Rd’ ‘get_cbh_metrics.Rd’ ‘get_cum_break.Rd’
    ‘get_depths.Rd’ ‘get_distance.Rd’ ‘get_effective_gap.Rd’
    ‘get_gaps_fbhs.Rd’ ‘get_layers_lad.Rd’ ‘get_real_depths.Rd’
    ‘get_real_fbh.Rd’
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘LaF-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_dm
> ### Title: Read and write data models for LaF
> ### Aliases: read_dm write_dm
> 
> ### ** Examples
> 
> # Create some temporary files
> tmpcsv  <- tempfile(fileext="csv")
> tmp2csv <- tempfile(fileext="csv")
> tmpyaml <- tempfile(fileext="yaml")
> 
> # Generate test data
> ntest <- 10
> column_types <- c("integer", "integer", "double", "string")
> testdata <- data.frame(
+     a = 1:ntest,
+     b = sample(1:2, ntest, replace=TRUE),
+     c = round(runif(ntest), 13),
+     d = sample(c("jan", "pier", "tjores", "corneel"), ntest, replace=TRUE)
+     )
> # Write test data to csv file
> write.table(testdata, file=tmpcsv, row.names=FALSE, col.names=FALSE, sep=',')
> 
> # Create LaF-object
> laf <- laf_open_csv(tmpcsv, column_types=column_types)
> 
> # Write data model to stdout() (screen)
> write_dm(laf, stdout())
Loading required namespace: yaml
Failed with error:  ‘there is no package called ‘yaml’’
Error in write_dm(laf, stdout()) : 
  The library yaml is required to read and write data models.
Execution halted
Running ‘test-all.R’ [2s/3s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check("LaF")
  Loading required package: LaF
  Failed with error:  'there is no package called 'yaml''
  Saving _problems/test_levels-49.R
  Failed with error:  'there is no package called 'yaml''
  Saving _problems/test_meta-30.R
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 170 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_levels.R:49:3'): write_dm and read_dm work with levels ─────────
  Error in `write_dm(laf, modelfile = tmpyaml)`: The library yaml is required to read and write data models.
  Backtrace:
      ▆
   1. └─LaF::write_dm(laf, modelfile = tmpyaml) at test_levels.R:49:3
  ── Error ('test_meta.R:30:3'): write_dm and read_dm work ───────────────────────
  Error in `write_dm(laf, modelfile = fnyaml)`: The library yaml is required to read and write data models.
  Backtrace:
      ▆
   1. └─LaF::write_dm(laf, modelfile = fnyaml) at test_meta.R:30:3
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 170 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘LaF-benchmark.Rnw’ using Sweave
--- finished re-building ‘LaF-benchmark.Rnw’

--- re-building ‘LaF-manual.Rnw’ using Sweave
Loading required namespace: yaml
Failed with error:  ‘there is no package called ‘yaml’’

Error: processing vignette 'LaF-manual.Rnw' failed with diagnostics:
 chunk 8 
Error in write_dm(dat, "model.yaml") : 
  The library yaml is required to read and write data models.

--- failed re-building ‘LaF-manual.Rnw’

SUMMARY: processing the following file failed:
  ‘LaF-manual.Rnw’

Error: Vignette re-building failed.
Execution halted
Cannot process vignettes
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  'knitr', 'rmarkdown', 'devtools', 'printr'

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Maintainer: ‘Robert B. Gramacy  <rbg@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "B."),
                      family = "Gramacy",
                      role = c("aut", "cre"),
                      email = "rbg@vt.edu"),
               person(given = "Furong",
                      family = "Sun",
                      role = "aut",
                      email = "furongs@vt.edu"))
as necessary.
'library' or 'require' call not declared from: ‘strucchange’
Maintainer: ‘Brian P. O'Connor  <brian.oconnor@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zakary", "A.", "Draper", "&", "Brian", "P."),
                      family = "O'Connor",
                      role = "aut"),
               person(given = c("Brian", "P."),
                      family = "O'Connor",
                      role = "cre",
                      email = "brian.oconnor@ubc.ca"))
as necessary.
Cannot process vignettes
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  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘NDVI2LAI.R’
Maintainer: ‘Jordan S Read <jread@usgs.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jordan", "S"),
                    family = "Read",
                    role = c("aut", "cre"),
                    email = "jread@usgs.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  (http://www.laketemperature.org). See citation('laketemps') for dataset
Please enclose URLs in angle brackets (<...>).
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Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘Brian Lee Yung Rowe <r@zatonovo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brian", "Lee", "Yung"),
                    family = "Rowe",
                    role = c("aut", "cre"),
                    email = "r@zatonovo.com")
as necessary.
checkRd: (-1) lambda.r-package.Rd:71-74: Lost braces
    71 | x \%g\% y \%:=\% {
       |                  ^
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Package required but not available: ‘modeest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
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Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'yaml'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
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Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
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Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de")
as necessary.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Packages required but not available: 'riskRegression', 'pec'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) GenerateData.Rd:35-36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:59-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:67-74: Lost braces in \itemize; \value handles \item{}{} directly
Cannot process vignettes
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No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
checkRd: (-1) DOS.Rd:34: Lost braces; missing escapes or markup?
    34 |         Band-specific sensor $G_{rescale}$ (gain). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
checkRd: (-1) DOS.Rd:37: Lost braces; missing escapes or markup?
    37 |         Band-specific sensor $B_{rescale}$ (bias). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
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Package has ‘vignettes’ subdirectory but apparently no vignettes.
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  'DT', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package required but not available: ‘htmlwidgets’

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  'knitr', 'rmarkdown', 'DT', 'plotly', 'liminal'

VignetteBuilder package required for checking but not installed: ‘knitr’

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Cannot process vignettes
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  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘Randy Lai <randy.cs.lai@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#REditorSupport_community:gitter.im?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Packages required but not available: 'lintr', 'roxygen2'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
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  'covr', 'knitr', 'rmarkdown'

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  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘Henrik Singmann <singmann+LaplacesDemon@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) LML.Rd:43: Lost braces
    43 |     is specified only with the \code{GD}, code{HME}, or \code{NSIS}
       |                                               ^
checkRd: (-1) LaplaceApproximation.Rd:485: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:117: Escaped LaTeX specials: \&
checkRd: (-1) MISS.Rd:106: Lost braces
   106 |   code{Fit$Imp}. In the presence of numerous missing values, say more
       |       ^
checkRd: (-1) Matrices.Rd:316: Lost braces
   316 |   Gauss-Hermite quadrature rules. A grid of order eqn{K} provides an
       |                                                      ^
checkRd: (-1) PMC.Rd:214: Lost braces
   214 |   item{nu}{This is the degrees of freedom parameter \eqn{\nu}{nu} for
       |       ^
checkRd: (-1) PMC.Rd:214-215: Lost braces
   214 |   item{nu}{This is the degrees of freedom parameter \eqn{\nu}{nu} for
       |           ^
checkRd: (-1) caterpillar.plot.Rd:15: Lost braces
    15 |     code{demonoid.hpc}, \code{iterquad}, \code{laplace}, \code{pmc},
       |         ^
Package required but not available: ‘DT’

Package suggested but not available for checking: ‘lares’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘yaml’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Weihua An <weihuaan@indiana.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Weihua",
                      family = "An",
                      role = c("aut", "cre"),
                      email = "weihuaan@indiana.edu"),
               person(given = "Xuefu",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Indiana", "University"),
                      family = "Bloomington",
                      role = "aut"))
as necessary.
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Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Brad",
                      family = "Efron",
                      role = "aut",
                      email = "brad@stat.stanford.edu"))
as necessary.
Maintainer: ‘Yaguang Li <liygcr7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yaguang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "liygcr7@gmail.com"),
               person(given = "Xin",
                      family = "Gao",
                      role = "aut"),
               person(given = "Wei",
                      family = "Xu",
                      role = "aut"))
as necessary.
Specified C++11: support will be removed soon
Maintainer: ‘Jonas Striaukas <jonas.striaukas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonas",
                      family = "Striaukas",
                      role = c("aut", "trl", "cre"),
                      email = "jonas.striaukas@gmail.com"),
               person(given = "Matthias",
                      family = "Weber",
                      role = "aut"))
as necessary.
Maintainer: ‘Lingfei Wang <Lingfei.Wang.github@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lingfei",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "Lingfei.Wang.github@outlook.com")
as necessary.
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Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘Michael Dewey <lists@dewey.myzen.co.uk>’

Package CITATION file contains call(s) to old-style personList() or
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Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
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Package has ‘vignettes’ subdirectory but apparently no vignettes.
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
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Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fMultivar', 'heatmaply', 'plotly'

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  'rmarkdown', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

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Package required but not available: ‘EGAnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yanxin Jin <yanxinj@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanxin",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "yanxinj@umich.edu"),
               person(given = "Samantha",
                      family = "Yang",
                      role = "aut"),
               person(given = c("Kean", "Ming"),
                      family = "Tan",
                      role = "aut"))
as necessary.
Specified C++11: support will be removed soon
Package required but not available: ‘ergm’

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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Maintainer: ‘Antony Borel <antony.borel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Borel",
                      family = "A.",
                      role = "aut"),
               person(given = "Pouydebat",
                      family = "E.",
                      role = "aut"),
               person(given = "Reghem",
                      family = "E.",
                      role = "aut"),
               person(given = "Antony",
                      family = "Borel",
                      role = "cre",
                      email = "antony.borel@gmail.com"))
as necessary.
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Cannot process vignettes
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  'knitr', 'rmarkdown', 'reactable'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(latex2exp)
  > 
  > test_check("latex2exp")
  Saving _problems/test_simple-166.R
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 100 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_simple.R:166:3'): Escaped symbols renders correctly ────────────
  Error in `str_replace_all(., "\\\\['\\$\\{\\}\\[\\]\\!\\?\\_\\^]", function(char) {     str_c("\\ESCAPED@", as.integer(charToRaw(str_replace_fixed(char, "\\", ""))), "{}") })`: `replacement` function must return a vector the same length as the input
  (2), not length 1.
  Backtrace:
       ▆
    1. ├─latex2exp:::expect_renders_same(...) at test_simple.R:166:3
    2. │ └─latex2exp:::.expect_renders(object, expected_expression, negate = FALSE) at ./setup.R:30:3
    3. │   └─latex2exp::TeX(act$val) at ./setup.R:65:5
    4. │     └─latex2exp:::parse_latex(input)
    5. │       └─... %>% ...
    6. ├─stringr::str_replace_all(., "([^\\\\]?)\\\\\\s", "\\1\\\\@SPACE2{}")
    7. │ └─stringr:::check_lengths(string, pattern, replacement)
    8. │   └─vctrs::vec_size_common(...)
    9. ├─stringr::str_replace_all(., "([^\\\\]?)\\\\;", "\\1\\\\@SPACE2{}")
   10. │ └─stringr:::check_lengths(string, pattern, replacement)
   11. │   └─vctrs::vec_size_common(...)
   12. ├─stringr::str_replace_all(., "([^\\\\]?)\\\\,", "\\1\\\\@SPACE1{}")
   13. │ └─stringr:::check_lengths(string, pattern, replacement)
   14. │   └─vctrs::vec_size_common(...)
   15. └─stringr::str_replace_all(...)
   16.   └─stringr:::str_transform_all(string, pattern, replacement)
   17.     └─cli::cli_abort(...)
   18.       └─rlang::abort(...)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 100 ]
  Error:
  ! Test failures.
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'pkgdown', 'devtools', 'covr', 'lintr',
  'longitudinalData', 'kml', 'mixtools'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘usethis’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'devtools', 'roxygen2', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'flextable', 'lavaanPlot', 'knitr', 'rmarkdown', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alex Lishinski <alexlishinski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Lishinski",
                    role = c("aut", "cre"),
                    email = "alexlishinski@gmail.com")
as necessary.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘W. Kyle Hamilton <kyle.hamilton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("W.", "Kyle"),
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "kyle.hamilton@gmail.com")
as necessary.
Package required but not available: ‘semPlot’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘00methods.R’ ‘creg_datalist.R’ ‘creg_input.R’ ‘creg_partable.R’
    ‘creg_startvals.r’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rgl', 'visNetwork'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jinsong Chen <jinsong.chen@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jinsong",
                    family = "Chen",
                    role = c("aut", "cre", "cph"),
                    email = "jinsong.chen@live.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running examples in ‘lawstat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: nig.parameter
> ### Title: Generate Parameters for the Normal Inverse Gaussian (NIG)
> ###   Distribution
> ### Aliases: nig.parameter
> ### Keywords: distribution
> 
> ### ** Examples
> 
> library(fBasics)
Error in library(fBasics) : there is no package called ‘fBasics’
Execution halted
Cannot process vignettes
Packages suggested but not available for checking:
  'fExtremes', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lay.Rd’
Package required but not available: ‘yaml’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bill Venables <bill.venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Found the following calls to attach():
File ‘lazyData/R/requireData.R’:
  attach(NULL, pos = pos, name = searchDataName)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Hadley Wickham <hadley@rstudio.com>’

Found the following (possibly) invalid file URIs:
  URI: Julia
    From: man/f_interp.Rd
  URI: Racket
    From: man/f_interp.Rd
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
File ‘lazyeval/libs/lazyeval.so’:
  Found non-API calls to R: ‘PRENV’, ‘R_PromiseExpr’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Uwe Block <u.block.mz@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Vladimir Zhbanko <vladimir.zhbanko@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vladimir",
                    family = "Zhbanko",
                    role = c("aut", "cre"),
                    email = "vladimir.zhbanko@gmail.com")
as necessary.
Maintainer: ‘Ivan Bezerra Allaman <iballaman@uesc.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Enio", "G."),
                      family = "Jelihovschi",
                      role = "aut",
                      email = "eniojelihovs@gmail.com"),
               person(given = c("Ivan", "Bezerra"),
                      family = "Allaman",
                      role = c("aut", "cre"),
                      email = "iballaman@uesc.br"))
as necessary.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Chao Zhu <zhuchao9966@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chao",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "zhuchao9966@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Bernardo Andrade <bbandrade@unb.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bernardo", "B."),
                      family = "Andrade",
                      role = "aut"),
               person(given = "Bernardo",
                      family = "Andrade",
                      role = "cre",
                      email = "bbandrade@unb.br"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arafat",
                      family = "TAYEB",
                      role = "aut",
                      email = "arafat.tayeb@ircm.qc.ca"),
               person(given = "Alexandre",
                      family = "BUREAU",
                      role = c("aut", "cre"),
                      email = "alexandre.bureau@msp.ulaval.ca"),
               person(given = "Aurelie",
                      family = "Labbe",
                      role = "aut",
                      email = "aurelie.labbe@mcgill.ca"))
as necessary.
Packages required but not available: 'rms', 'kinship2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'leaflet', 'leaflet.extras'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Michael Buecker <michael.buecker@fh-muenster.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Buecker",
                    role = c("aut", "cre"),
                    email = "michael.buecker@fh-muenster.de")
as necessary.
Maintainer: ‘Antoine Tremblay <trea26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antoine",
                      family = "Tremblay",
                      role = c("aut", "cre"),
                      email = "trea26@gmail.com"),
               person(given = c("Department", "of"),
                      family = "Psychology",
                      role = "aut"),
               person(given = "Dalhousie",
                      family = "University",
                      role = "aut"))
as necessary.
Maintainer: ‘Weimin Zhang <zhangwm@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘JLchemix.Rd’:
    https://doi.org/10.1111/biom.12972
  File ‘sampledata.Rd’:
    https://doi.org/10.1111/biom.12972
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Daniel Manrique-Vallier <dmanriqu@indiana.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Manrique-Vallier",
                    role = c("aut", "cre"),
                    email = "dmanriqu@indiana.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'bsplus', 'DT', 'plotly'

Packages suggested but not available for checking:
  'xcms', 'MSnbase', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gurbakhshash Singh <gsingh@ccsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gurbakhshash",
                      family = "Singh",
                      role = c("aut", "cre"),
                      email = "gsingh@ccsu.edu"),
               person(given = c("Gordon", "Hilton"),
                      family = "Fick",
                      role = "aut"))
as necessary.
Package required but not available: ‘semPlot’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chun-Yu Liu <john401528@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chun-Yu",
                      family = "Liu",
                      role = c("aut", "cph", "cre"),
                      email = "john401528@gmail.com"),
               person(given = "Shu-Nung",
                      family = "Yao",
                      role = c("rev", "ths")))
as necessary.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jonas Rieger <jonas.rieger@tu-dortmund.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Santiago Olivella <olivella@unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Chang",
                      role = "aut"),
               person(given = "Santiago",
                      family = "Olivella",
                      role = "cre",
                      email = "olivella@unc.edu"))
as necessary.
Package required but not available: ‘visNetwork’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'pkgdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^
checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages suggested but not available for checking:
  'mallet', 'gistr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/details.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kristopher Williams <kristopher.williams83@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kristopher",
                    family = "Williams",
                    role = c("aut", "cre"),
                    email = "kristopher.williams83@gmail.com")
as necessary.
Maintainer: ‘Charlie Casper <charlie.casper@hsc.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlie",
                      family = "Casper",
                      role = c("aut", "cre"),
                      email = "charlie.casper@hsc.utah.edu"),
               person(given = "Thomas",
                      family = "Cook",
                      role = "aut"),
               person(given = c("Oscar", "A.", "Perez.", "Based", "on", "FORTRAN", "program"),
                      family = "ld98.",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Package required but not available: ‘yaml’

Packages suggested but not available for checking: 'knitr', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘ldmppr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predict_marks
> ### Title: Predict values from the mark distribution
> ### Aliases: predict_marks
> 
> ### ** Examples
> 
> # Simulate a realization
> generating_parameters <- c(2, 8, .02, 2.5, 3, 1, 2.5, .2)
> M_n <- matrix(c(10, 14), ncol = 1)
> generated_locs <- simulate_sc(
+   t_min = 0,
+   t_max = 1,
+   sc_params = generating_parameters,
+   anchor_point = M_n,
+   xy_bounds = c(0, 25, 0, 25)
+ )
> 
> # Load the raster files
> raster_paths <- list.files(system.file("extdata", package = "ldmppr"),
+   pattern = "\\.tif$", full.names = TRUE
+ )
> rasters <- lapply(raster_paths, terra::rast)
> 
> # Scale the rasters
> scaled_raster_list <- scale_rasters(rasters)
> 
> # Load the example mark model
> file_path <- system.file("extdata", "example_mark_model.rds", package = "ldmppr")
> example_mark_model <- readRDS(file_path)
> 
> # Unbundle the model
> mark_model <- bundle::unbundle(example_mark_model)
Error in xgboost::xgb.load.raw(object, as_booster = TRUE) : 
  unused argument (as_booster = TRUE)
Calls: <Anonymous> ... <Anonymous> -> unbundle -> unbundle.bundle -> <Anonymous>
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'GUniFrac', 'modeest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vasileios Karapoulios <billkarap123@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vasileios",
                    family = "Karapoulios",
                    role = c("aut", "cre"),
                    email = "billkarap123@gmail.com")
as necessary.
Packages required but not available: 'keras', 'devtools', 'tensorflow'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘modeest’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'VariantAnnotation'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
Problems with news in ‘NEWS.md’:
No news entries found.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Taylor B. Arnold <tarnold2@richmond.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Taylor", "B."),
                    family = "Arnold",
                    role = c("aut", "cre"),
                    email = "tarnold2@richmond.edu")
as necessary.
Maintainer: ‘Masatoshi Katabuchi <mattocci27@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Masatoshi",
                    family = "Katabuchi",
                    role = c("aut", "cre"),
                    email = "mattocci27@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘leaflet’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'shinytest'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'htmlwidgets', 'leaflet'

Packages suggested but not available for checking:
  'leafgl', 'mapdeck', 'plainview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘leaflet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'htmlwidgets'

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘leaflet’

Packages suggested but not available for checking: 'htmlwidgets', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘leaflet’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'manipulateWidget', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'htmlwidgets', 'leaflet', 'leaflet.extras'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kenton Russell <kent.russell@timelyportfolio.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Packages required but not available: 'htmlwidgets', 'leaflet'

Packages which this enhances but not available for checking:
  'mapedit', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Package suggested but not available for checking: ‘leaflet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lidR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Agustina Ventre Lespiaucq <aguslespiaucq@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Agustina", "Ventre"),
                      family = "Lespiaucq",
                      role = c("aut", "cre"),
                      email = "aguslespiaucq@gmail.com"),
               person(given = c("Silvia", "Santamaria"),
                      family = "Bueno",
                      role = "aut"))
as necessary.
Maintainer: ‘Tim Appelhans <tim.appelhans@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Packages required but not available: 'htmlwidgets', 'leaflet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yunting Sun <yunting.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yunting",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "yunting.sun@gmail.com"),
               person(given = "Nancy",
                      family = "R.Zhang",
                      role = "aut",
                      email = "nzhang@stanford.edu"),
               person(given = "Art",
                      family = "B.Owen",
                      role = "aut",
                      email = "owen@stanford.edu"))
as necessary.
checkRd: (-1) IPODFUN.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{H}{an N by N projection matrix X(X'X)^{-1}X' }
       |                                               ^
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "Lumley", "based", "on", "Fortran", "code", "by", "Alan"),
                      family = "Miller",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Lumley",
                      role = "cre",
                      email = "t.lumley@auckland.ac.nz"))
as necessary.
Package required but not available: ‘opencpu’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jim Albert <albert@bgsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jim",
                    family = "Albert",
                    role = c("aut", "cre"),
                    email = "albert@bgsu.edu")
as necessary.
'library' or 'require' calls not declared from:
  ‘coda’ ‘lattice’ ‘survival’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) clusterDistance.Rd:28-29: Lost braces
    28 | \code{approach} indicates the algorithm used to get the value. \code{distance} indicates the distance used to get the value. Possible values: {\code{'MAX'},
       |                                                                                                                                               ^
checkRd: (-1) clusterDistance.details.Rd:28-29: Lost braces
    28 | \code{approach} indicates the algorithm used to get the value. \code{distance} indicates the distance used to get the value. Possible values: {\code{'MAX'},
       |                                                                                                                                               ^
checkRd: (-1) clusterDistanceByApproach.Rd:24-25: Lost braces
    24 | \code{approach} indicates the algorithm used to get the value. Possible values: {\code{'MAX'},
       |                                                                                 ^
checkRd: (-1) clusterDistanceByApproach.details.Rd:24-25: Lost braces
    24 | \code{approach} indicates the algorithm used to get the value. Possible values: {\code{'MAX'},
       |                                                                                 ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alvaro Briz-Redon <albrizre@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alvaro",
                      family = "Briz-Redon",
                      role = c("aut", "cre"),
                      email = "albrizre@gmail.com"),
               person(given = "Angel",
                      family = "Serrano-Aroca",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Richie Cotton <richierocks@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Richie",
                    family = "Cotton",
                    role = c("aut", "cre"),
                    email = "richierocks@gmail.com")
as necessary.
checkRd: (-1) S2mu.Rd:18: Lost braces; missing escapes or markup?
    18 | \code{S2mu} computes a estimation of the variance, given a sample {x} with known population mean (denoted by \code{mu}).
       |                                                                   ^
checkRd: (-1) sample.quantile.Rd:20: Lost braces; missing escapes or markup?
    20 | \code{sample.quantile} computes a estimation of different quantiles, given a sample {x}, using order statistics.
       |                                                                                     ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'ChemoSpec', 'knitr', 'roxut', 'rmarkdown', 'plotly', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Liam J. Revell <liam.revell@umb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Liam", "J."),
                    family = "Revell",
                    role = c("aut", "cre"),
                    email = "liam.revell@umb.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'devtools', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'htmlwidgets', 'knitr', 'rmarkdown'

Packages suggested but not available for checking: 'shinytest2', 'sortable'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexia",
                    family = "Jolicoeur-Martineau",
                    role = c("aut", "cre"),
                    email = "alexia.jolicoeur-martineau@mail.mcgill.ca")
as necessary.

The Description field contains
  <arXiv:1703.08111>. This approach has greatly enhanced predictive power
  are available <arXiv:1712.04058>. The software can now produce
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘Hmisc’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘grab_crosswalk.R’ ‘lehdr.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘usethis’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘sccore’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘S. Thomas Kelly <tomkellygenetics@gmail.com>’

The Description field contains
  to Leiden: guaranteeing well-connected communities. <arXiv:1810.08473>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David Leonard <davidsleonard@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

Packages suggested but not available for checking:
  'rmarkdown', 'diffviewer'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chris Hammill <cfhammill@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: www.schoolofhaskell.com/school/to-infinity-and-beyond/pick-of-the-week/a-little-lens-starter-tutorial
    From: README.md
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'usethis', 'roxygen2'

Packages suggested but not available for checking: 'yaml', 'covr', 'packer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lucas Processi <lucasprocessi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lucas",
                      family = "Processi",
                      role = c("aut", "cre"),
                      email = "lucasprocessi@gmail.com"),
               person(given = "Luiz",
                      family = "Aizemberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Burhan Ozer Cavdar <bcavdar17@ku.edu.tr>’

The Description field contains
  <arXiv:2112.06251>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'knitr', 'kableExtra'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'plotly', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Petter Mostad <mostad@chalmers.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petter",
                    family = "Mostad",
                    role = c("aut", "cre"),
                    email = "mostad@chalmers.se")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘letter_value.R’ ‘print_lv.R’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'pkgdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'tidyverse', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) hash_sentiment_slangsd.Rd:28-37: Lost braces
    28 | article{DBLP:journals/corr/Wu-etal16,
       |        ^
checkRd: (-1) hash_sentiment_slangsd.Rd:29: Lost braces; missing escapes or markup?
    29 |   author    = {Liang Wu and Fred Morstatter and Huan Liu},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:30-31: Lost braces
    30 |   title     = {SlangSD: Building and Using a Sentiment Dictionary of Slang 
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:32: Lost braces; missing escapes or markup?
    32 |   journal   = {CoRR},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:33: Lost braces; missing escapes or markup?
    33 |   volume    = {abs/1608.05129},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:34: Lost braces; missing escapes or markup?
    34 |   year      = {2016},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:35: Lost braces; missing escapes or markup?
    35 |   url       = {http://arxiv.org/abs/1608.05129},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:36: Lost braces; missing escapes or markup?
    36 |   timestamp = {Wed, 17 Aug 2016 23:32:57 GMT}
       |               ^
checkRd: (-1) sw_python.Rd:32: Lost braces; missing escapes or markup?
    32 | * Neither the name of the {organization} nor the names of its
       |                           ^
Packages required but not available: 'quanteda', 'quanteda.textstats'

Packages suggested but not available for checking:
  'corpustools', 'covr', 'kableExtra', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Adam Spannbauer <spannbaueradam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Spannbauer",
                      role = c("aut", "cre"),
                      email = "spannbaueradam@gmail.com"),
               person(given = "Bryan",
                      family = "White",
                      role = "ctb"))
as necessary.
Packages required but not available: 'EBImage', 'DT'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Florian Erhard <florian.erhard@uni-wuerzburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Florian",
                    family = "Erhard",
                    role = c("aut", "cre"),
                    email = "florian.erhard@uni-wuerzburg.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yuan Tang <terrytangyuan@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ali Karimnezhad <ali_karimnezhad@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ali",
                      family = "Karimnezhad",
                      role = c("aut", "cre"),
                      email = "ali_karimnezhad@yahoo.com"),
               person(given = "Johnary",
                      family = "Kim",
                      role = "aut"),
               person(given = "Anna",
                      family = "Akpawu",
                      role = "aut"),
               person(given = "Justin",
                      family = "Chitpin",
                      role = "aut"),
               person(given = c("David", "R"),
                      family = "Bickel",
                      role = "aut"))
as necessary.
Maintainer: ‘M. Padilla <padilla.mpf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ye",
                      family = "Yang",
                      role = "aut"),
               person(given = "Marta",
                      family = "Padilla",
                      role = "aut"),
               person(given = "Alaa",
                      family = "Ali",
                      role = "aut"),
               person(given = "Kyle",
                      family = "Leckett",
                      role = "aut"),
               person(given = "Zhenyu",
                      family = "Yang",
                      role = "aut"),
               person(given = "Zuojing",
                      family = "Li",
                      role = "aut"),
               person(given = c("Corey", "M."),
                      family = "Yanofsky",
                      role = "aut"),
               person(given = c("David", "R."),
                      family = "Bickel",
                      role = "aut"),
               person(given = "M.",
                      family = "Padilla",
                      role = "cre",
                      email = "padilla.mpf@gmail.com"))
as necessary.
Maintainer: ‘Ali Karimnezhad <ali.karimnezhad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ali",
                    family = "Karimnezhad",
                    role = c("aut", "cre"),
                    email = "ali.karimnezhad@gmail.com")
as necessary.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/biascorrection.Rnw’
   ‘inst/doc/identification.Rnw’
   ‘inst/doc/lfehow.Rnw’
   ‘inst/doc/speed.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'plotly'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘dygraphs’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘monobin’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihuai",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "zihuai@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"),
               person(given = "Bhramar",
                      family = "Mukherjee",
                      role = "aut"),
               person(given = "Min",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@umich.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'yaml'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘testthat.R’ [12s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(lgr)
  > 
  > test_check("lgr")
  Saving _problems/test_Appender-230.R
  Saving _problems/test_lgr-package-40.R
  [ FAIL 2 | WARN 1 | SKIP 4 | PASS 612 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • Terminal does not support colors (1): 'test_log_levels.R:58:3'
  • {yaml} is not installed (3): 'test_logger_config.R:30:3',
    'test_logger_config.R:53:3', 'test_logger_config.R:120:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_Appender.R:213:1'): AppenderConsole: chooses stderr by default when in knitr ──
  Error in `loadNamespace(x)`: cyclic namespace dependency detected when loading 'knitr', already loading 'knitr'
  ── Failure ('test_lgr-package.R:40:3'): get_envar_default_config works as expected ──
  Expected `get_envar_default_config()` to be an S3 object.
  Actual OO type: none.
  
  [ FAIL 2 | WARN 1 | SKIP 4 | PASS 612 ]
  Error:
  ! Test failures.
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Found the following HTML validation problems:
lgr.html:1742:1 (AppenderFileRotatingTime.Rd:74): Warning: <a> anchor "method-AppenderFileRotating-new" already defined
lgr.html:1784:1 (AppenderFileRotatingTime.Rd:105): Warning: <a> anchor "method-AppenderFileRotating-rotate" already defined
lgr.html:1869:1 (AppenderFileRotatingTime.Rd:158): Warning: <a> anchor "method-AppenderFileRotating-format" already defined
lgr.html:1883:1 (AppenderFileRotatingTime.Rd:167): Warning: <a> anchor "method-AppenderFileRotating-clone" already defined
Package required but not available: ‘plotly’

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown'

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Gentleman",
                      role = "aut"),
               person(given = "Arthur",
                      family = "Allignol",
                      role = "cre",
                      email = "arthur.allignol@gmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jiechao Xiong <xiongjiechao@pku.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Feng",
                      family = "Ruan",
                      role = "aut"),
               person(given = "Jiechao",
                      family = "Xiong",
                      role = c("aut", "cre"),
                      email = "xiongjiechao@pku.edu.cn"),
               person(given = "Yuan",
                      family = "Yao",
                      role = "aut"))
as necessary.
checkRd: (-1) isingdata.Rd:14: Lost braces; missing escapes or markup?
    14 |     \item{X}{a 5000-by-100 matrix, each entry is in {-1,1}.}
       |                                                     ^
checkRd: (-1) predict.lb.Rd:16: Escaped LaTeX specials: \$
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘lidR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

Packages suggested but not available for checking:
  'EBImage', 'mapview', 'mapedit', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'demography', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Maintainer: ‘Glenna Nightingale <glenna.evans@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Glenna",
                    family = "Nightingale",
                    role = c("aut", "cre"),
                    email = "glenna.evans@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'lintr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ruben H. Roa-Ureta <ruben.roa.ureta@mail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ruben", "H."),
                    family = "Roa-Ureta",
                    role = c("aut", "cre"),
                    email = "ruben.roa.ureta@mail.com")
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘LifeInsureR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rmarkdown', 'kableExtra'

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'leaflet', 'leaflet.minicharts'

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'yaml', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Barner <m@martinbarner.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Barner",
                    role = c("aut", "cre"),
                    email = "m@martinbarner.de")
as necessary.
checkRd: (-1) lx_list_lights.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:27: Lost braces in \itemize; meant \describe ?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'gt', 'gtExtras'

Packages suggested but not available for checking:
  'covr', 'flextable', 'gtsummary', 'knitr', 'plotly', 'rmarkdown',
  'rsconnect', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'knitr', 'yaml'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ruggero Bellio <ruggero.bellio@uniud.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruggero",
                      family = "Bellio",
                      role = c("aut", "cre"),
                      email = "ruggero.bellio@uniud.it"),
               person(given = "Donald",
                      family = "Pierce",
                      role = "aut"))
as necessary.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/likelihoodAsy.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) likelihood_calculation.Rd:24: Lost braces
    24 | For eqn{i = 1\dots N} independent observations in a vector \var{X}, with individual observations \eqn{x_i}{xi}, and a set of parameter values \eqn{\theta}:
       |        ^
checkRd: (-1) simulated_annealing_algorithm.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:27: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Peter Cahusac <peteqsac@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘L_1way_ANOVA.Rd’:
    \keyword{ANOVA;}
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_1way_RM_ANOVA.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_1way_cat.Rd’:
    \keyword{Likelihood-based;}
    \keyword{binomial;}
  File ‘L_2S_ttest.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
    \keyword{test;}
  File ‘L_2way_Factorial_ANOVA.Rd’:
    \keyword{ANOVA;}
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_2way_cat.Rd’:
    \keyword{Likelihood-based;}
  File ‘L_OR.Rd’:
    \keyword{Likelihood;}
    \keyword{interval;}
    \keyword{ratio;}
    \keyword{support;}
  File ‘L_RR.Rd’:
    \keyword{Likelihood;}
    \keyword{interval;}
    \keyword{risk;}
    \keyword{support;}
  File ‘L_corr.Rd’:
    \keyword{Likelihood;}
    \keyword{correlation;}
    \keyword{support;}
  File ‘L_efficacy.Rd’:
    \keyword{efficacy;}
    \keyword{interval;}
    \keyword{support;}
  File ‘L_logistic_regress.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_regress.Rd’:
    \keyword{Likelihood;}
    \keyword{linear;}
    \keyword{quadratic;}
    \keyword{regression;}
    \keyword{support;}
  File ‘L_t_test_sample_size.Rd’:
    \keyword{Likelihood;}
    \keyword{evidence;}
    \keyword{size;}
    \keyword{test;}
  File ‘L_ttest.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
    \keyword{test;}
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown', 'rosetta'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Lana Garmire <lana.garmire.group@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'RWeka', 'survminer'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Travis Barton <travisdatabarton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Travis",
                    family = "Barton",
                    role = c("aut", "cre"),
                    email = "travisdatabarton@gmail.com",
                    comment = "2018")
as necessary.
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Emil Hvitfeldt <emilhhvitfeldt@gmail.com>’

The Description field contains
  (2016) <arXiv:1602.04938>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'keras', 'htmlwidgets'

VignetteBuilder package required for checking but not installed: ‘knitr’
'library' or 'require' calls not declared from:
  ‘data.table’ ‘magrittr’ ‘purrr’
Running ‘testthat.R’ [21s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(lime)
  > 
  > test_check("lime")
  Saving _problems/test-text-28.R
  [ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-h2o.R:3:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-text.R:28:3'): single sentence explanation ───────────────────
  Expected `explanation` to have length 13.
  Actual length: 11.
  
  [ FAIL 1 | WARN 6 | SKIP 1 | PASS 21 ]
  Error:
  ! Test failures.
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'psyverse', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ethan Z. Welty <ethan.welty+linbin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Derick L. Rivers <riversdl@alumni.vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Derick", "L."),
                      family = "Rivers",
                      role = c("aut", "cre"),
                      email = "riversdl@alumni.vcu.edu"),
               person(given = c("Edward", "L."),
                      family = "Boone",
                      role = "aut"))
as necessary.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yuancheng Si <siyuanchengman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Saralees", "Nadarajah", "&", "Yuancheng"),
                      family = "Si",
                      role = "aut"),
               person(given = "Peihao",
                      family = "Wang",
                      role = "aut"),
               person(given = "Yuancheng",
                      family = "Si",
                      role = "cre",
                      email = "siyuanchengman@gmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Moriña",
                    role = c("aut", "cre"),
                    email = "david.morina@uab.cat",
                    comment = "ISGlobal, Centre for Research in Environmental Epidemiology")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'lintr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘qtl’

Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Vishesh Shrivastav <vishesh2k6@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vishesh",
                    family = "Shrivastav",
                    role = c("aut", "cre"),
                    email = "vishesh2k6@gmail.com")
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'htmlwidgets', 'rmarkdown'

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'kableExtra', 'knitr', 'gt', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Micah Iserman <micah.iserman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Micah",
                    family = "Iserman",
                    role = c("aut", "cre"),
                    email = "micah.iserman@gmail.com")
as necessary.
Packages required but not available: 'leaflet', 'leaflet.minicharts'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yongfu Liao <liao961120@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: /../../issues/3
    From: README.md
Packages required but not available: 'knitr', 'DT'

Packages suggested but not available for checking: 'pkgdown', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'devtools', 'roxygen2', 'yaml'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lisa Ouellette <louellet@uncc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘qtl’

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = c("aut", "cre"),
                      email = "charles.bouveyron@gmail.com"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"),
               person(given = "Stéphane",
                      family = "Petiot",
                      role = "aut"),
               person(given = "Carlos",
                      family = "Ocanto",
                      role = "aut"))
as necessary.
Maintainer: ‘Ksenia N. Kyzyurova <ksenia.kyzyurova@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ksenia", "N."),
                      family = "Kyzyurova",
                      role = c("aut", "cre"),
                      email = "ksenia.kyzyurova@gmail.com"),
               person(family = "kseniak.ucoz.net",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexander Grueneberg <cran@agrueneberg.info>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'leaflet', 'DT', 'knitr', 'plotly', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Michal Bojanowski <michal2992@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: recon.icm.edu.pl
    From: man/linkprediction.Rd
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'downlit', 'knitr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'visNetwork', 'rAmCharts', 'shinybusy'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Aaron",
                      family = "Wolen",
                      role = "aut"))
as necessary.
Packages required but not available: 'rmarkdown', 'knitr'

Package suggested but not available for checking: ‘yaml’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
checkRd: (-1) solveLP.Rd:119: Escaped LaTeX specials: \&
Maintainer: ‘Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yannick",
                      family = "Baraud",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Giraud",
                      role = "aut"),
               person(given = "Sylvie",
                      family = "Huet",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Auder",
                      role = "cre",
                      email = "benjamin.auder@universite-paris-saclay.fr"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VARselect.Rd: lm.ridge
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

Packages suggested but not available for checking:
  'bookdown', 'rmarkdown', 'tufte'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotly'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cancerlipidome.Rd’:
    http://dx.doi.org/10.21228/M8RX01
    https://doi.org/10.3390/metabo8030041
  File ‘humanlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://doi.org/10.1194/jlr.M009449
  File ‘liverlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://dx.doi.org/10.1194/jlr.P056002
Packages required but not available: 'knitr', 'shadowtext'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'tidyverse', 'ggiraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rcdk', 'knitr'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mauro Sereno <mauro.sereno@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauro",
                    family = "Sereno",
                    role = c("aut", "cre"),
                    email = "mauro.sereno@unibo.it")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Patrick Roocks <mail@p-roocks.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "Roocks",
                    role = c("aut", "cre"),
                    email = "mail@p-roocks.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘list_bind.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Russell S. Pierce <russell.s.pierce@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Russell", "S."),
                    family = "Pierce",
                    role = c("aut", "cre"),
                    email = "russell.s.pierce@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/drknexus/listWithDefaults
which should likely be
  https://github.com/drknexus/listWithDefaults/issues
instead.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Will Cornwell <wcornwell@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: \doi%7B10.1111/2041-210X.12138%7D
    From: README.md
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'roxygen2', 'devtools', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'yaml', 'rmarkdown'

Packages suggested but not available for checking: 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘dest.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    https://doi.org/10.1016/j.jspi.2010.05.030
    http://doi.org/10.1080/03610920601126522
  File ‘hatl.Rd’:
    http://doi.org/10.1080/03610929308831027
  File ‘infoliu.Rd’:
    https://doi.org/10.1109/TAC.1974.1100705
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘lstats.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    http://doi.org/10.2307/1267380
  File ‘plot.biasliu.Rd’:
    https://doi.org/10.1002/cem.2555
  File ‘plot.infoliu.Rd’:
    https://doi.org/10.1109/TAC.1974.1100705
  File ‘plot.liu.Rd’:
    http://doi.org/10.1080/03610929308831027
  File ‘press.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    http://doi.org/10.1080/03610920601126522
  File ‘residuals.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘summary.liu.Rd’:
    http://doi.org/10.1080/03610918.2012.750354
checkRd: (-1) lstats.liu.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) vcov.liu.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear Liu regression model for scalar or vector biasing parameter \code{d}{d} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{d}{d}.}
       |                                                                                                                             ^
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'RWeka'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'skimr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘liver-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: skim
> ### Title: Skim a data frame to get useful summary statistics
> ### Aliases: skim
> ### Keywords: models
> 
> ### ** Examples
> 
> data(risk)
> 
> skim(risk)
Error in loadNamespace(x) : there is no package called ‘skimr’
Calls: skim ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ryan Gill <ryan.gill@louisville.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michal",
                      family = "Czajkowski",
                      role = "aut"),
               person(given = "Ryan",
                      family = "Gill",
                      role = c("aut", "cre"),
                      email = "ryan.gill@louisville.edu"),
               person(given = "Greg",
                      family = "Rempala",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Maintainer: ‘Lars Kotthoff <larsko@uwyo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lars",
                      family = "Kotthoff",
                      role = c("aut", "cre"),
                      email = "larsko@uwyo.edu"),
               person(given = "Bernd",
                      family = "Bischl",
                      role = "aut"),
               person(given = "Barry",
                      family = "Hurley",
                      role = "ctb"),
               person(given = "Talal",
                      family = "Rahwan",
                      role = "ctb"),
               person(given = "Damir",
                      family = "Pulatov",
                      role = "ctb"))
as necessary.
Package required but not available: ‘rJava’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) MHDI.Rd:23: Escaped LaTeX specials: \&
Packages required but not available:
  'plotly', 'timetk', 'modeltime.ensemble', 'modeltime'

Packages suggested but not available for checking:
  'roxygen2', 'usethis', 'prophet', 'modeltime.resample'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘quanteda’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘RWeka’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Diego F Coelho <diegofcoelho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Diego", "F"),
                      family = "Coelho",
                      role = c("aut", "cre"),
                      email = "diegofcoelho@gmail.com"),
               person(given = c("Pedro", "Vitor", "Oliveira"),
                      family = "Menezes",
                      role = "dtc",
                      email = "pedrod841@hotmail.com"),
               person(given = c("Carla", "Corina", "dos", "Santos"),
                      family = "Porto",
                      role = "dtc",
                      email = "carlacorina@hotmail.com.br"),
               person(given = c("Jon", "George"),
                      family = "Huddleston",
                      role = "rev",
                      email = "Jonathan.Huddleston@brunel.ac.uk"),
               person(given = c("Elias", "Basile"),
                      family = "Tambourgi",
                      role = "rev",
                      email = "eliastam@feq.unicamp.br"))
as necessary.
Package required but not available: ‘fmdu’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/comparison.Rnw’
   ‘inst/doc/implementation.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ggformula'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

Package which this enhances but not available for checking: ‘DHARMa’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/Theory.Rnw’
   ‘inst/doc/lmer.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘"Antoine Tremblay, Statistics Canada" <trea26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antoine",
                      family = "Tremblay",
                      role = "aut"),
               person(given = "Statistics",
                      family = "Canada",
                      role = "aut"),
               person(given = "Johannes",
                      family = "Ransijn",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Copenhagen",
                      role = "aut"),
               person(given = "\"Antoine",
                      family = "Tremblay",
                      role = "cre"),
               person(given = "Statistics",
                      family = "Canada\"",
                      role = "cre",
                      email = "trea26@gmail.com"))
as necessary.
checkRd: (-1) relLik.Rd:16: Lost braces
    16 | \item{AIC(x), BIC(x) }{The \code{AIC} or ]code{BIC} value of the first model object.}
       |                                               ^
checkRd: (-1) relLik.Rd:17: Lost braces
    17 | \item{AIC(y), BIC(y) }{The \code{AIC} or ]code{BIC} value of the second model object.}
       |                                               ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) bootstrap_pvals.Rd:78: Lost braces; missing escapes or markup?
    78 | $(n_{extreme} + 1) / (B + 1)$.
       |     ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Rune Haubo Bojesen Christensen <Rune.Haubo@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ham.Rd’:
    https://doi.org/10.1016/j.foodqual.2009.09.004
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Thomas Kvalnes <thomas.kvalnes@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Kvalnes",
                    role = c("aut", "cre"),
                    email = "thomas.kvalnes@ntnu.no")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'semPlot'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'bookdown', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Marvin N. Wright <marv@wrig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marvin", "N."),
                    family = "Wright",
                    role = c("aut", "cre"),
                    email = "marv@wrig.de")
as necessary.
Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "Joseph", "L."),
                      family = "Schafer",
                      role = "aut"),
               person(given = c("Jing", "hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) vcov.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear ridge regression model for scalar or vector biasing parameter \code{K}{K} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{K}{K}.}
       |                                                                                                                               ^
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lmSubsets.Rcheck/00install.out’ for details.
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘SuperLearner’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'knitr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Francesco Pauli <francesco.pauli@deams.units.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francesco",
                    family = "Pauli",
                    role = c("aut", "cre"),
                    email = "francesco.pauli@deams.units.it",
                    comment = "see file LICENSEMEDIA for credits on sounds and images")
as necessary.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Konrad Klotzke <omd.bms.utwente.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Paul",
                      family = "Fox",
                      role = "aut"),
               person(given = "Konrad",
                      family = "Klotzke",
                      role = c("aut", "cre"),
                      email = "omd.bms.utwente.stats@gmail.com"),
               person(given = c("Rinke", "Klein"),
                      family = "Entink",
                      role = "aut"))
as necessary.
Maintainer: ‘Wangshu Tu <wangshu.tu@carleton.ca>’

The Description field contains
  <arXiv:2011.06682>, and is designed for clustering compositional data.
  in papers: Tu and Subedi (2021) <arXiv:2101.01871> and Tu and Subedi
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'plotly', 'knitr', 'rmarkdown', 'covr', 'pec'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'DT', 'config', 'echarts4r', 'golem', 'htmlwidgets', 'colourpicker'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hiroyuki Yamamoto <h.yama2396@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hiroyuki",
                    family = "Yamamoto",
                    role = c("aut", "cre"),
                    email = "h.yama2396@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Author
    Maintainer
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘OpenStreetMap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Antonio Elías <antonioefz91@gmail.com>’

The Description field contains
  <arXiv:2007.16059>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/aefdz/localFDA
which should likely be
  https://github.com/aefdz/localFDA/issues
instead.
Maintainer: ‘Tore Selland Kleppe <tore.kleppe@uis.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tore", "Selland"),
                    family = "Kleppe",
                    role = c("aut", "cre"),
                    email = "tore.kleppe@uis.no")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Martin Walter <mf-walter@web.de>’

The Description field contains
  Pitkin (2013) <arXiv:1309.6392>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/xiangzhou09/localIV
which should likely be
  https://github.com/xiangzhou09/localIV/issues
instead.
checkRd: (-1) mte_tilde_at.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Walerian Sokolowski <walerian.sokolowski@wlogsolutions.com>’

The Description field contains
  LocalSolver (http://www.localsolver.com/) is an optimization engine
  developed by Innovation24 (http://www.innovation24.fr/). It is designed
  (http://www.wlogsolutions.com/en/) in collaboration with Decision
  (http://www.sgh.waw.pl/en/).
Please enclose URLs in angle brackets (<...>).
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘locate.R’
Maintainer: ‘Maximilian Zellner <zellnermaximilian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maximilian",
                    family = "Zellner",
                    role = c("aut", "cre"),
                    email = "zellnermaximilian@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) FootballBrain.Rd:15: Lost braces; missing escapes or markup?
    15 |     { } \tab {or \code{FBConcuss}=football player with concussion history} \cr
       |     ^
checkRd: (-1) HappyPlanetIndex.Rd:14: Lost braces; missing escapes or markup?
    14 |     { } \tab {\code{5}=South Asia, \code{6}=East Asia, \code{7}=former Communist countries}\cr
       |     ^
checkRd: (-1) RockandRoll2012.Rd:17: Lost braces; missing escapes or markup?
    17 |     { } \tab {\code{Lifetime Achievement}, \code{Sideman}} \cr
       |     ^
checkRd: (-1) RockandRoll2015.Rd:17: Lost braces; missing escapes or markup?
    17 |     { } \tab {\code{Lifetime Achievement}, \code{Sideman}} \cr
       |     ^
checkRd: (-1) StudentSurvey.Rd:12: Lost braces; missing escapes or markup?
    12 |     \item{\code{Sex}}{code {F}=female or \code{M}=male}
       |                            ^
checkRd: (-1) SynchronizedMovement.Rd:16: Lost braces; missing escapes or markup?
    16 |     { } \tab {for High/Low Synchronization + High/Low Exertion}\cr
       |     ^
checkRd: (-1) TrafficFlow.Rd:25: Escaped LaTeX specials: \#
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = c("Sharon", "M."),
                      family = "Lutz",
                      role = "ctb"),
               person(given = "Christoph",
                      family = "Lange",
                      role = "ctb"))
as necessary.
Maintainer: ‘Jialu Ran <jialuran422@gmail.com>’

The Description field contains
  was proposed in Wang and Guo (2023) <arXiv:2008.08915>. For brain
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'ensembldb', 'plotly', 'rtracklayer'

Packages suggested but not available for checking:
  'AnnotationHub', 'EnsDb.Hsapiens.v75', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ilja M. Nolte <i.m.nolte@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ahmad",
                      family = "Vaez",
                      role = "aut"),
               person(given = c("Ilja", "M."),
                      family = "Nolte",
                      role = c("aut", "cre"),
                      email = "i.m.nolte@umcg.nl"),
               person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Rix <alexrix@umich.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘clmi.Rd’:
    https://doi.org/10.1097/EDE.0000000000001052
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bittermelon.R’ ‘lofi.Rd’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Note: skipping ‘LogConcDEAD.Rnw’ due to unavailable dependencies: 'rgl'
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaspar",
                      family = "Rufibach",
                      role = c("aut", "cre"),
                      email = "kaspar.rufibach@gmail.com"),
               person(given = "Lutz",
                      family = "Duembgen",
                      role = "aut",
                      email = "duembgen@stat.unibe.ch"))
as necessary.
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaspar",
                      family = "Rufibach",
                      role = c("aut", "cre"),
                      email = "kaspar.rufibach@gmail.com"),
               person(given = "Fadoua",
                      family = "Balabdaoui",
                      role = "aut",
                      email = "fadoua@ceremade.dauphine.fr"),
               person(given = "Hanna",
                      family = "Jankowski",
                      role = "aut",
                      email = "hkj@mathstat.yorku.ca"),
               person(given = "Kathrin",
                      family = "Weyermann",
                      role = "aut",
                      email = "kathrin.weyermann@bkw-fmb.ch"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘logger-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: log_chunk_time
> ### Title: Automatically log execution time of knitr chunks
> ### Aliases: log_chunk_time
> 
> ### ** Examples
> 
> # To be put in the first chunk of a document
> log_chunk_time("chunk {options$label}")
Error: knitr is required to use this functionality
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sneha Tody <sn.tody1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sneha",
                    family = "Tody",
                    role = c("aut", "cre"),
                    email = "sn.tody1@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Charles Kooperberg <clk@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Kooperberg",
                      role = c("aut", "cre"),
                      email = "clk@fredhutch.org"),
               person(given = "Ingo",
                      family = "Ruczinski",
                      role = "aut",
                      email = "ingo@jhu.edu"))
as necessary.
Packages required but not available: 'emayili', 'shinybusy'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhiyong Zhang <johnnyzhz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haiyan",
                      family = "Liu",
                      role = "aut"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "johnnyzhz@gmail.com"))
as necessary.
Packages required but not available:
  'adabag', 'gam', 'gt', 'reactable', 'reactablefmtr'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

Depends: includes the non-default packages:
  'adabag', 'arm', 'brnn', 'C50', 'car', 'corrplot', 'Cubist',
  'doParallel', 'dplyr', 'e1071', 'gam', 'gbm', 'ggplot2', 'ggplotify',
  'glmnet', 'gridExtra', 'gt', 'ipred', 'klaR', 'MachineShop',
  'magrittr', 'MASS', 'mda', 'parallel', 'pls', 'pROC', 'purrr',
  'randomForest', 'ranger', 'reactable', 'reactablefmtr', 'readr',
  'rpart', 'scales', 'tidyr', 'tree', 'xgboost'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrew J. Landgraf <andland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "J."),
                    family = "Landgraf",
                    role = c("aut", "cre"),
                    email = "andland@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Youjin Lee <youjin.lee@pennmedicine.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Youjin",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "youjin.lee@pennmedicine.upenn.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Manuel Escabias <escabias@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carmen", "Lucia", "Reina", "Ana", "Maria", "Aguilera"),
                      family = "<aaguiler@ugr.es>",
                      role = "aut",
                      email = "aaguiler@ugr.es"),
               person(given = "Manuel",
                      family = "Escabias",
                      role = c("aut", "cre"),
                      email = "escabias@ugr.es"))
as necessary.
Package required but not available: ‘fda.usc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Wutzler <twutz@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wutzler",
                    role = c("aut", "cre"),
                    email = "twutz@bgc-jena.mpg.de")
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'gtsummary', 'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Thomas Wutzler <twutz@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wutzler",
                    role = c("aut", "cre"),
                    email = "twutz@bgc-jena.mpg.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Phillip Labuschagne <philliplab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Phillip",
                    family = "Labuschagne",
                    role = c("aut", "cre"),
                    email = "philliplab@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘logger.R’
Maintainer: ‘Guy Ashiri-Prossner <guy.ashiri@mail.huji.ac.il>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guy",
                    family = "Ashiri-Prossner",
                    role = c("aut", "cre"),
                    email = "guy.ashiri@mail.huji.ac.il")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'pkgdown', 'lintr', 'yaml'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘logrx-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: axecute
> ### Title: Creation of a log and axecution of a file
> ### Aliases: axecute
> 
> ### ** Examples
> 
> dir <- tempdir()
> text <- 'print("Hello, logrx-person!")'
> fileConn <- file(file.path(dir, "hello.R"))
> writeLines(text, fileConn)
> close(fileConn)
> 
> axecute(file.path(dir, "hello.R"))
[1] "Hello, logrx-person!"
> 
> 
> fileConn <- file(file.path(dir, "hello.Rmd"))
> writeLines(text, fileConn)
> close(fileConn)
> 
> axecute(file.path(dir, "hello.Rmd"))
Error: there is no package called ‘rmarkdown’
Error in loadNamespace(x) : there is no package called ‘knitr’
Calls: axecute ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'ergm'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Eric Bridgeford <ericwb95@gmail.com>’

The Description field contains
  et al. (2017) <arXiv:1709.01233>, we provide several methods for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'EBImage', 'alphashape3d'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'knitr'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Madan G Kundu <madan_g.kundu@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Madan", "G"),
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "madan_g.kundu@yahoo.com")
as necessary.
Package required but not available: ‘survminer’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Zhuowei Sun <sunzw21@mails.jlu.edu.cn>’

The Description field contains
  this package: Sun, Z. et al. (2023) <arXiv:2305.17715> and Liu, C. et
  al. (2023) <arXiv:2305.17662>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'clv', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Package required but not available: ‘fdapace’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'FactoMineR', 'factoextra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘longmixr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_clusters
> ### Title: Extract the cluster assignments
> ### Aliases: get_clusters
> 
> ### ** Examples
> 
> # not run
> set.seed(5)
> test_data <- data.frame(patient_id = rep(1:10, each = 4),
+ visit = rep(1:4, 10),
+ var_1 = c(rnorm(20, -1), rnorm(20, 3)) +
+ rep(seq(from = 0, to = 1.5, length.out = 4), 10),
+ var_2 = c(rnorm(20, 0.5, 1.5), rnorm(20, -2, 0.3)) +
+ rep(seq(from = 1.5, to = 0, length.out = 4), 10))
> model_list <- list(flexmix::FLXMRmgcv(as.formula("var_1 ~ .")),
+ flexmix::FLXMRmgcv(as.formula("var_2 ~ .")))
Error in loadNamespace(x) : there is no package called ‘mgcv’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alessio Farcomeni <alessio.farcomeni@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alessio",
                    family = "Farcomeni",
                    role = c("aut", "cre"),
                    email = "alessio.farcomeni@uniroma1.it")
as necessary.
Maintainer: ‘Ross Jacobucci <rcjacobuc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ross",
                      family = "Jacobucci",
                      role = c("aut", "cre"),
                      email = "rcjacobuc@gmail.com"),
               person(given = "Sam",
                      family = "Stewart",
                      role = "aut"),
               person(given = "Mohamed",
                      family = "Abdolell",
                      role = "aut"),
               person(given = "Sarfaraz",
                      family = "Serang",
                      role = "ctb"),
               person(given = "Gabriela",
                      family = "Stegmann",
                      role = "ctb"))
as necessary.
Packages required but not available: 'fdapace', 'fda.usc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'scagnostics', 'rgl', 'RDRToolbox', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘colourpicker’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'tidyverse', 'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  l_tour.Rd: grand_tour, dependence_tour, frozen_tour, guided_tour,
    planned_tour
  tour_pairs.Rd: l_pairs
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexis Dinno <alexis.dinno@pdx.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexis",
                    family = "Dinno",
                    role = c("aut", "cre"),
                    email = "alexis.dinno@pdx.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rstanarm'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rms’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xi",
                      family = "LUO",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package required but not available: ‘dineq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'Hmisc', 'HH'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'shapes', 'rgl', 'geomorph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sara Algeri <salgeri@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Algeri",
                      role = c("aut", "cre"),
                      email = "salgeri@umn.edu"),
               person(given = "Haoran",
                      family = "Liu",
                      role = "aut",
                      email = "liu00728@umn.edu"))
as necessary.

The Description field contains
  S. (2019) <arXiv:1906.06615>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Daniela M Witten <dwitten@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M"),
                      family = "Witten",
                      role = c("aut", "cre"),
                      email = "dwitten@uw.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kaijun Wang <kaijun.wang@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijun.wang@temple.edu"))
as necessary.
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kaijun Wang <kaijunwang.19@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijunwang.19@gmail.com"))
as necessary.

The Description field contains
  (2020, Biometrika); <arXiv:1810.01724>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jeffrey Endelman <endelman@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Endelman",
                    role = c("aut", "cre"),
                    email = "endelman@wisc.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David A. Schoenfeld <Dschoenfeld@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "A."),
                    family = "Schoenfeld",
                    role = c("aut", "cre"),
                    email = "dschoenfeld@mgh.harvard.edu")
as necessary.
Maintainer: ‘Kaijun Wang <kaijunwang.19@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijunwang.19@gmail.com"))
as necessary.

The Description field contains
  S., and Wang, K (2021, <arXiv:2004.09588>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiangyu Zhang <zhan6004@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhan6004@umn.edu"),
               person(given = "Sara",
                      family = "Algeri",
                      role = "aut",
                      email = "salgeri@umn.edu"))
as necessary.

The Description field contains
  Algeri S. and Zhang X. (2020) <arXiv:2005.13011>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'LPBkg', 'Hmisc'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rong Li <rong_li@ruc.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingcong",
                      family = "Wu",
                      role = "aut"),
               person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Rong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "rong_li@ruc.edu.cn"))
as necessary.
Maintainer: ‘Marco Geraci <marco.geraci@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Geraci",
                    role = c("aut", "cre"),
                    email = "marco.geraci@uniroma1.it")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "chedgala@espol.edu.ec"),
               person(given = "Luis",
                      family = "Benites",
                      role = "aut",
                      email = "lbenitess@pucp.edu.pe"),
               person(given = "Marcelo",
                      family = "Bourguignon",
                      role = "aut",
                      email = "m.p.bourguignon@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@uconn.edu"))
as necessary.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rick Wargo <lrequire@rickwargo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rick",
                    family = "Wargo",
                    role = c("aut", "cre"),
                    email = "lrequire@rickwargo.com")
as necessary.
Maintainer: ‘Adam Mantz <amantz@slac.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Mantz",
                    role = c("aut", "cre"),
                    email = "amantz@slac.stanford.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Fridolin Wild <wild@brookes.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fridolin",
                    family = "Wild",
                    role = c("aut", "cre"),
                    email = "wild@brookes.ac.uk")
as necessary.
checkRd: (-1) specialchars.Rd:6: Escaped LaTeX specials: \&
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Guangwei Weng <wengx076@umn.edu>’

The Description field contains
  matrix. See Doss and Weng (2018) <arXiv:1806.00731> for more detail.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Fella Ulandari <16.9134@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fella",
                      family = "Ulandari",
                      role = c("aut", "cre"),
                      email = "16.9134@stis.ac.id"),
               person(given = "Robert",
                      family = "Kurniawan",
                      role = "aut"))
as necessary.
Package required but not available: ‘TSdist’

Package suggested but not available for checking: ‘LSDsensitivity’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bjoern Schwalb <schwalb.bjoern@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bjoern",
                      family = "Schwalb",
                      role = c("aut", "cre"),
                      email = "schwalb.bjoern@gmail.com"),
               person(given = "Achim",
                      family = "Tresch",
                      role = "aut"),
               person(given = "Phillipp",
                      family = "Torkler",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Duemcke",
                      role = "ctb"),
               person(given = "Carina",
                      family = "Demel",
                      role = "ctb"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "ctb"),
               person(given = "Bill",
                      family = "Venables",
                      role = "ctb"))
as necessary.
Package required but not available: ‘LSDinterface’

Package suggested but not available for checking: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sergio Andrés Cabrera Miranda <sergio05acm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sergio", "Andrés", "Cabrera"),
                      family = "Miranda",
                      role = c("aut", "cre"),
                      email = "https://orcid.org/0000-0002-8126-8521"),
               person(given = c("Juan", "Gabriel", "Triana"),
                      family = "Laverde",
                      role = "aut",
                      email = "https://orcid.org/0000-0003-2991-6082"))
as necessary.
Package required but not available: ‘plotly’

Package suggested but not available for checking: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Mikhail A. Beketov <mikhail.beketov@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "A."),
                    family = "Beketov",
                    role = c("aut", "cre"),
                    email = "mikhail.beketov@gmx.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘LSMonteCarlo-package.Rd’:
    \keyword{ 
      Quantitative Finance
      Option pricing
      Mon [TRUNCATED]
Package required but not available: ‘fBasics’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Gereon Poschmann <gereon.poschmann@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rafael",
                      family = "Dellen",
                      role = "aut"),
               person(given = c("with", "contributions", "of", "Fabian"),
                      family = "Kruse",
                      role = "aut"),
               person(given = "Gereon",
                      family = "Poschmann",
                      role = "cre",
                      email = "gereon.poschmann@hhu.de"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Danielle Navarro <djnavarro@protonmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mehdi Sarparast <mehdisarparast@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mehdi",
                    family = "Sarparast",
                    role = c("aut", "cre"),
                    email = "mehdisarparast@gmail.com")
as necessary.
Maintainer: ‘Arvin Satwani <arvinsatwani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhezhen",
                      family = "Jin",
                      role = "aut",
                      email = "zj7@columbia.edu"),
               person(given = "Arvin",
                      family = "Satwani",
                      role = c("aut", "cre"),
                      email = "arvinsatwani@gmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'moderndive', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_plot_labels.Rd’ ‘datasim_helpers.R’ ‘datasim_make.Rd’
    ‘model_eval.R’ ‘model_eval.Rd’ ‘model_plot.R’ ‘model_skeleton.Rd’
    ‘model_values.R’ ‘model_values.Rd’ ‘mosaic_cull_for_do.Rd’ ‘ntiles.R’
    ‘ntiles.Rd’ ‘point_plot.R’ ‘point_plot.Rd’ ‘print.R’
    ‘random_terms.Rd’ ‘regression_summaries.Rd’ ‘sims.R’
    ‘statistical_annotations.Rd’ ‘trials.R’ ‘trials.Rd’ ‘zero_one.Rd’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘EFAfactors’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) LS.kalman.Rd:65: Escaped LaTeX specials: \&
checkRd: (-1) spectral.density.Rd:55: Escaped LaTeX specials: \&
Maintainer: ‘Peiliang Bai <baipl92@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peiliang",
                    family = "Bai",
                    role = c("aut", "cre"),
                    email = "baipl92@ufl.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'quanteda', 'quanteda.textstats'

Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown', 'wordvector'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ocheredko Oleksandr <Ocheredko@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ocheredko",
                    family = "Oleksandr",
                    role = c("aut", "cre"),
                    email = "ocheredko@yahoo.com")
as necessary.
Running examples in ‘ltable-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ltable-package
> ### Title: ltable
> ### Aliases: ltable
> ### Keywords: package
> 
> ### ** Examples
> 
> require(ltable)
> data(sdata, package="ltable")
> table_f(sdata, "a")

  a:FALSE a:TRUE Total, N
1       9     10       19
> table_f(sdata, "a", MV=TRUE, extended=TRUE)

  a:FALSE a:TRUE NA Total, N
1       9     10  3       22
> table_f(sdata, "a,b,c")

           a        b c:female c:male Total, N
1      FALSE        1        0      3        3
2      FALSE        2        6      0        6
3       TRUE        1        0      5        5
4       TRUE        2        4      0        4
sum Total, N Total, N       10      8       18
> knitr::kable(table_f(sdata, "a,b,c,d", type=2, digits=3))
Error in loadNamespace(x) : there is no package called ‘knitr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
MCPower  5.562  0.003   6.824
MCLogLin 4.606  0.023   5.751
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘supportR’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Martin Blostein <martin.blostein@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Blostein",
                      role = c("aut", "cre"),
                      email = "martin.blostein@gmail.com"),
               person(given = "Tatjana",
                      family = "Miljkovic",
                      role = "aut",
                      email = "miljkot@miamioh.edu"))
as necessary.
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nikola Kasprikova <nikola.kasprikova@lf1.cuni.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nikola",
                    family = "Kasprikova",
                    role = c("aut", "cre"),
                    email = "nikola.kasprikova@lf1.cuni.cz")
as necessary.
checkRd: (-1) k.Rd:27: Lost braces
    27 |  code{\link{ACSPlan-class}}, 
       |      ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Dong Liang <dliang@umces.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Naresh",
                      family = "Kumar",
                      role = "aut"),
               person(given = "Dong",
                      family = "Liang",
                      role = c("aut", "cre"),
                      email = "dliang@umces.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Specified C++11: support will be removed soon
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) Upload_to_db.Rd:43: Lost braces
    43 | lucas]{Connect_to_db}
       |       ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘networkD3’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘fGarch’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maninder Singh Dhillon <manidhillon1989@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maninder", "Singh"),
                      family = "Dhillon",
                      role = c("aut", "cre"),
                      email = "manidhillon1989@gmail.com"),
               person(given = "Thorsten",
                      family = "Dahms",
                      role = "ctb"),
               person(given = "Leon",
                      family = "Nill",
                      role = "ctb"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Simon Moulds <sim.moulds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Moulds",
                    role = c("aut", "cre"),
                    email = "sim.moulds@gmail.com")
as necessary.
Running examples in ‘lulcc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: allow
> ### Title: Implement decision rules for land use change
> ### Aliases: allow
> 
> ### ** Examples
> 
> 
> ## Plum Island Ecosystems
> 
> ## load observed land use data
> obs <- ObsLulcRasterStack(x=pie,
+                    pattern="lu",
+                    categories=c(1,2,3),
+                    labels=c("forest","built","other"),
+                    t=c(0,6,14))
> 
> ## get land use values
> x <- getValues(obs[[1]])
> x <- x[!is.na(x)]
> 
> ## create vector of arbitrary land use history values
> hist <- sample(1:10, length(x), replace=TRUE)
> 
> ## calculate demand and get change direction for first timestep
> dmd <- approxExtrapDemand(obs=obs, tout=0:14)
Warning in total(x = obs) :
  missing argument 'categories': getting categories from 'x'
Error in loadNamespace(x) : there is no package called ‘Hmisc’
Calls: approxExtrapDemand ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Cannot process vignettes
Packages suggested but not available for checking:
  'spelling', 'plotly', 'rmarkdown', 'knitr', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Siyu Tao <siyutao2020@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyu",
                      family = "Tao",
                      role = c("aut", "cre"),
                      email = "siyutao2020@u.northwestern.edu"),
               person(given = "Yichi",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("Daniel", "W."),
                      family = "Apley",
                      role = "aut"),
               person(given = "Wei",
                      family = "Chen",
                      role = "aut"))
as necessary.

The Description field contains
  Chen, and Daniel W. Apley (2018) <arXiv:1806.07504>. The package is
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) LVGP_fit.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_predict.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) math_example.Rd:21: Lost braces
    21 | Data are sampled from the modified math function based on the first example in the paper listed in code{references}.
       |                                                                                                        ^
Found the following significant warnings:
  depend_funcs.cpp:127:26: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  depend_funcs.cpp:135:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  depend_funcs.cpp:345:26: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  depend_funcs.cpp:354:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  depend_funcs.cpp:361:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/lvmcomp.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
Specified C++11: support will be removed soon
checkRd: (-1) StEM_pcirt.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{response}{N by J matrix containing {0,1,...,M-1} responses, where N is the number of respondents and J is the number of items.}
       |                                          ^
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'rmarkdown', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Packages required but not available: 'qgraph', 'semPlot'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘classify.R’ ‘extract.R’ ‘score.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘gWQS’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Sean Jewell <swjewell@uw.edu>’

The Description field contains
  <arXiv:1703.08644>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'DiagrammeR', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘usethis’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jenise Swall <jswall@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jenise",
                    family = "Swall",
                    role = c("aut", "cre"),
                    email = "jswall@vcu.edu")
as necessary.
Package required but not available: ‘GenomicFeatures’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'mixtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Andrew Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'adabag', 'bartMachine', 'Hmisc', 'kableExtra', 'knitr',
  'randomForestSRC', 'rmarkdown', 'rms'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘etl’

Packages suggested but not available for checking:
  'knitr', 'leaflet', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rlist’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘devtools’

Package suggested but not available for checking: ‘rnaturalearthhires’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Dave Zes <zesdave@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dave",
                    family = "Zes",
                    role = c("aut", "cre"),
                    email = "zesdave@gmail.com")
as necessary.
Package required but not available: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xlsx', 'hwordcloud', 'visNetwork'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'xlsx', 'hwordcloud'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Maintainer: ‘Daniel Falbel <daniel@rstudio.com>’

The Description field contains
  (2020) <arxiv:2101.11075>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/introducing_madness.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘AC Del Re <acdelre@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew Cefalu <Matthew_Cefalu@rand.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Cefalu",
                    role = c("aut", "cre"),
                    email = "matthew_cefalu@rand.org")
as necessary.
Packages required but not available: 'knitr', 'bookdown', 'DT', 'fabR'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Doulaye Dembele <doulaye@igbmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Doulaye",
                    family = "Dembele",
                    role = c("aut", "cre"),
                    email = "doulaye@igbmc.fr")
as necessary.
Package required but not available: ‘roxygen2’

Packages suggested but not available for checking:
  'DiagrammeR', 'knitr', 'quarto', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'quarto'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Remko Duursma <remkoduursma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Remko",
                    family = "Duursma",
                    role = c("aut", "cre"),
                    email = "remkoduursma@gmail.com")
as necessary.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'lpjmlkit', 'knitr', 'quitte', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'spelling', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘encoding.R’ [0s/0s]
  Running ‘spelling.R’ [0s/0s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Simon Garnier <garnier@njit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Garnier",
                    role = c("aut", "cre"),
                    email = "garnier@njit.edu")
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'BiocStyle', 'vcr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'tidyverse', 'flextable'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘John Chaston <john_chaston@byu.edu>’

Found the following (possibly) invalid file URI:
  URI: www.orthomcl.org
    From: inst/doc/using_mag.html
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Mark Clements <mark.clements@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Clements",
                      role = c("aut", "cre"),
                      email = "mark.clements@ki.se"),
               person(given = "Dianne",
                      family = "O'Connell",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
File ‘magrittr/libs/magrittr.so’:
  Found non-API calls to R: ‘Rf_allocSExp’, ‘SET_PRCODE’, ‘SET_PRENV’,
    ‘SET_PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'survminer'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘maicplus-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: basic_kmplot2
> ### Title: Basic Kaplan Meier (KM) plot function using ggplot
> ### Aliases: basic_kmplot2
> 
> ### ** Examples
> 
> library(survival)
> data(adtte_sat)
> data(pseudo_ipd_sat)
> 
> kmobj_A <- survfit(Surv(TIME, EVENT) ~ ARM,
+   data = adtte_sat,
+   conf.type = "log-log"
+ )
> 
> kmobj_B <- survfit(Surv(TIME, EVENT) ~ ARM,
+   data = pseudo_ipd_sat,
+   conf.type = "log-log"
+ )
> 
> kmlist <- list(kmobj_A = kmobj_A, kmobj_B = kmobj_B)
> kmlist_name <- c("A", "B")
> 
> basic_kmplot2(kmlist, kmlist_name)
Error in basic_kmplot2(kmlist, kmlist_name) : 
  survminer package is required for this function
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘survminer’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'spelling', 'covr', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rahul Premraj <r.premraj+mailR@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rahul",
                    family = "Premraj",
                    role = c("aut", "cre"),
                    email = "r.premraj+mailr@gmail.com")
as necessary.
Package required but not available: ‘rJava’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Packages required but not available:
  'config', 'DT', 'golem', 'htmlwidgets', 'tmap'

Packages suggested but not available for checking:
  'BiocCheck', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alex J. Krebs <Krebs.AlexJ@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J."),
                    family = "Krebs",
                    role = c("aut", "cre"),
                    email = "krebs.alexj@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘visNetwork’

Packages suggested but not available for checking:
  'INLA', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'nomnoml', 'roxygen2'

Packages suggested but not available for checking:
  'knitr', 'covr', 'rmarkdown', 'visNetwork'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Maintainer: ‘Mehrab Ghanat Bari <m.ghanatbari@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mehrab", "Ghanat"),
                    family = "Bari",
                    role = c("aut", "cre"),
                    email = "m.ghanatbari@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘ows4R’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/MALDIquantForeign-intro.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/MALDIquant-intro.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rJava’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'finch', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Imanuel Costigan <i.costigan@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Imanuel",
                    family = "Costigan",
                    role = c("aut", "cre"),
                    email = "i.costigan@me.com")
as necessary.
checkRd: (-1) create_terminal_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                              ^
checkRd: (-1) create_terminal_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                                                   ^
checkRd: (-1) full_repo_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                              ^
checkRd: (-1) full_repo_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                                                   ^
Maintainer: ‘Tao Wang <tao.wang@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "tao.wang@utsouthwestern.edu"),
               person(given = "Chongzhi",
                      family = "Zang",
                      role = "aut"))
as necessary.
Maintainer: ‘Luciane Ferreira Alcoforado <lucianea@id.uff.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luciane", "Ferreira"),
                    family = "Alcoforado",
                    role = c("aut", "cre"),
                    email = "lucianea@id.uff.br")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Veronica Vinciotti <veronica.vinciotti@brunel.ac.uk>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘manet.Rd’:
    \keyword{actor-event,}
    \keyword{models,}
  File ‘mixtbern.Rd’:
    \keyword{actor-event,}
    \keyword{models,}
checkRd: (-1) manet.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Luke Jostins <luke.jostins@kennedy.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Jostins",
                    role = c("aut", "cre"),
                    email = "luke.jostins@kennedy.ox.ac.uk")
as necessary.
checkRd: (-1) MangroveTree.Rd:37: Lost braces
    37 |       An object of class \\code{\link[Mangrove]{MangrovePed}}
       |                                ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘Mangrove.Rnw’ using Sweave

Error: processing vignette 'Mangrove.Rnw' failed with diagnostics:
 chunk 19 
Error in library(kinship2) : there is no package called ‘kinship2’

--- failed re-building ‘Mangrove.Rnw’

SUMMARY: processing the following file failed:
  ‘Mangrove.Rnw’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Chris Grace <cgrace@well.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Grace",
                    role = c("aut", "cre"),
                    email = "cgrace@well.ox.ac.uk")
as necessary.
Packages required but not available: 'htmlwidgets', 'knitr'

Packages suggested but not available for checking:
  'dygraphs', 'leaflet', 'plotly', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidyverse’

Package suggested but not available for checking: ‘spelling’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Shiqi Tu <tushiqi@picb.ac.cn>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sarah Friedrich <sarah.friedrich@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@math.uni-augsburg.de"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'GFD'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
checkRd: (-1) EEGwide.Rd:30-33: Lost braces
    30 |   if(requireNamespace("ggplot2")){ 
       |                                  ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘keras’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'rmarkdown', 'knitr', 'reactable', 'dygraphs'

Packages suggested but not available for checking: 'covr', 'diffviewer'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'pkgdown', 'knitr', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘usethis’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'semPlot', 'semptools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘flextable’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘knitr’

Packages suggested but not available for checking:
  'pointblank', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christiana Kartsonaki <christiana.kartsonaki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christiana",
                    family = "Kartsonaki",
                    role = c("aut", "cre"),
                    email = "christiana.kartsonaki@gmail.com")
as necessary.
Maintainer: ‘Dani Irawan <irawan_dani@yahoo.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘shapes’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘leaflet’

Packages suggested but not available for checking:
  'mapdeck', 'tmap', 'mapboxer'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Stefan Kuethe <crazycapivara@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.mapbox.com/mapbox-gl-js/api/map/#map#fitbounds
    From: man/fit_bounds.Rd
    Message: Invalid URL: '#' not allowed in fragment
Packages required but not available: 'htmlwidgets', 'yaml'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'INLA'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alex Deckmyn <alex.deckmyn@meteo.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "S", "code", "by", "Richard", "A."),
                      family = "Becker",
                      role = "aut"),
               person(given = c("Allan", "R.", "Wilks.", "R", "version", "by", "Ray"),
                      family = "Brownrigg.",
                      role = "aut",
                      email = "Ray.Brownrigg@ecs.vuw.ac.nz"),
               person(given = "Alex",
                      family = "Deckmyn",
                      role = "cre",
                      email = "alex.deckmyn@meteo.be"))
as necessary.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'covr', 'googleway', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'DT', 'htmlwidgets', 'leafem', 'leaflet', 'leaflet.extras', 'leafpm',
  'leafpop', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gam’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘htmlwidgets’

Packages suggested but not available for checking:
  'mapboxapi', 'usethis', 'leaflet'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/mapmisc.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(shinytest2)
  Error in library(shinytest2) : there is no package called 'shinytest2'
  Execution halted
Packages required but not available: 'networkD3', 'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'smacof', 'plotly'

Packages suggested but not available for checking:
  'polymapR', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'leaflet'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'mapview', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'altdoc'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'leaflet', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘mapSpain-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: addProviderEspTiles
> ### Title: Include base tiles of Spanish public administrations on a
> ###   'leaflet' map
> ### Aliases: addProviderEspTiles providerEspTileOptions
> 
> ### ** Examples
> 
> library(leaflet)
Error in library(leaflet) : there is no package called ‘leaflet’
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Matt Taddy <mataddy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Taddy",
                    role = c("aut", "cre"),
                    email = "mataddy@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available:
  'htmlwidgets', 'leafem', 'leaflet', 'leafpop'

Packages suggested but not available for checking:
  'knitr', 'leaflet.extras2', 'leafsync', 'mapdeck', 'plainview',
  'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Andrey Paramonov <paramon@acdlabs.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrey",
                    family = "Paramonov",
                    role = c("aut", "cre"),
                    email = "paramon@acdlabs.ru")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Eliezer Gurarie <egurarie@umd.edu>’

Found the following (possibly) invalid file URI:
  URI: Eurodeer.org
    From: man/Michela.Rd
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) locate_shift.Rd:29: Lost braces
    29 | \code{\link{quickfit}}, code{\link{locator}}
       |                             ^
checkRd: (-1) marcher-package.Rd:14: Lost braces; missing escapes or markup?
    14 | 1. \code{\link{estimate_shift}} {Estimate a range shift process.}
       |                                 ^
checkRd: (-1) marcher-package.Rd:16: Lost braces; missing escapes or markup?
    16 | 2. \code{\link{simulate_shift}} {Simulate a range shift process.}
       |                                 ^
checkRd: (-1) marcher-package.Rd:18: Lost braces; missing escapes or markup?
    18 | 3. \code{\link{plot.shiftfit}} {Visualize a range shift process.}
       |                                ^
checkRd: (-1) marcher-package.Rd:20: Lost braces; missing escapes or markup?
    20 | 4. \code{\link{test_rangeshift}} {Test whether a range shift occurred.}
       |                                  ^
checkRd: (-1) marcher-package.Rd:22: Lost braces; missing escapes or markup?
    22 | 5. \code{\link{test_return}} {Test whether a migration was a return migration.}
       |                              ^
checkRd: (-1) marcher-package.Rd:24: Lost braces; missing escapes or markup?
    24 | 6. \code{\link{test_stopover}} {Test whether a stopover occurred during a migration.}
       |                                ^
checkRd: (-1) quickfit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) quickfit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Andre Berchtold <andre.berchtold@unil.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ogier",
                      family = "Maitre",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Emery",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Oliver"),
                      family = "Buschor",
                      role = "aut"),
               person(given = "Andre",
                      family = "Berchtold",
                      role = c("aut", "cre"),
                      email = "andre.berchtold@unil.ch"))
as necessary.
Packages required but not available: 'usethis', 'devtools', 'tidyverse'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'cjoint', 'covr', 'crch', 'gam', 'itsadug', 'kableExtra', 'mclogit',
  'modelsummary', 'pkgdown', 'Rchoice', 'rmarkdown', 'rms', 'rstanarm',
  'spelling', 'tidyverse', 'yaml', 'altdoc', 'knitr', 'quarto'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'quarto'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘furniture’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/TechnicalDetails.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Henrik Spliid <hspl@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Henrik",
                    family = "Spliid",
                    role = c("aut", "cre"),
                    email = "hspl@dtu.dk")
as necessary.
checkRd: (-1) marima.Rd:28: Lost braces; missing escapes or markup?
    28 | ( if(is.ts(DATA)) { DATA <- as.matrix(data.frame(DATA)) } and a message
       |                   ^
checkRd: (-1) marima.Rd:223: Escaped LaTeX specials: \&
Package required but not available: ‘qgraph’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'BiocStyle'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) markdownInput.Rd:17: Lost braces
    17 | \item{inputId}{The code{input} slot that will be used to access the value.}
       |                        ^
checkRd: (-1) markdownInput.Rd:35: Lost braces in \enumerate; \value handles \item{}{} directly
checkRd: (-1) markdownInput.Rd:36: Lost braces in \enumerate; \value handles \item{}{} directly
checkRd: (-1) markdownInput.Rd:81-82: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) markdownInput.Rd:84-86: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) markdownInput.Rd:89-90: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) moduleMarkdownInput.Rd:64-65: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) moduleMarkdownInput.Rd:67-69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) moduleMarkdownInput.Rd:72-73: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Jeff Laake <jefflaake@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Laake",
                      role = c("aut", "cre"),
                      email = "jefflaake@gmail.com"),
               person(given = "Devin",
                      family = "Johnson",
                      role = "aut",
                      email = "devin.johnson@noaa.gov"),
               person(given = "Paul",
                      family = "Conn",
                      role = "aut",
                      email = "paul.conn@noaa.gov"),
               person(given = c("example", "for", "simHMM", "from", "Jay"),
                      family = "Rotella",
                      role = "aut"))
as necessary.
Packages required but not available: 'knitr', 'kableExtra', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "Jiebiao",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jing",
                      family = "Lei",
                      role = "aut"),
               person(given = "Kathryn",
                      family = "Roeder",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Specified C++11: support will be removed soon
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Utkarsh", "J."),
                      family = "Dang",
                      role = c("aut", "cre"),
                      email = "utkarshdang@cunet.carleton.ca"),
               person(given = c("G.", "Brian"),
                      family = "Golding",
                      role = "aut"))
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'DiagrammeR', 'rmarkdown', 'bookdown', 'rticles'

VignetteBuilder packages required for checking but not installed:
  'rmarkdown', 'knitr', 'bookdown', 'rticles'
'library' or 'require' calls not declared from:
  ‘MCMCpack’ ‘matlab’ ‘microbenchmark’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Balazs Dobi <dobibalazs@inf.elte.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Balazs", "Dobi", "&", "Andras"),
                      family = "Zempleni",
                      role = "aut"),
               person(given = "Balazs",
                      family = "Dobi",
                      role = "cre",
                      email = "dobibalazs@inf.elte.hu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) Markovchart.Rd:154: Lost braces
   154 | If either \code{h} or \code{k} have length greater than 1, then the \code{G-value} (weighted average of average cost and cost standard deviation) is calculated for all given values without optimisation. The value of the function in this case is a data frame of class code{Markov_grid} with \code{length(h)*length(k)} number of rows and three columns for \code{h}, \code{k} and the \code{G-value}.
       |                                                                                                                                                                                                                                                                                ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘tidyverse’

Packages suggested but not available for checking: 'rmarkdown', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

The Description field contains
  <arxiv:1312.0557>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/AsymptoticMarkowitz.Rnw’
   ‘inst/doc/MarkowitzR.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Viviane Philipps <viviane.philipps@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Viviane",
                      family = "Philipps",
                      role = c("aut", "cre"),
                      email = "viviane.philipps@u-bordeaux.fr"),
               person(given = "Cecile",
                      family = "Proust-Lima",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Prague",
                      role = "aut"),
               person(given = "Boris",
                      family = "Hejblum",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Commenges",
                      role = "aut"),
               person(given = "Amadou",
                      family = "Diakite",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) marqLevAlg-package.Rd:14: Lost braces; missing escapes or markup?
    14 | (GH^{-1}G).
       |     ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'gt', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘S. M. Barbosa <susana.barbosa@fc.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susana",
                      family = "Barbosa",
                      role = "aut"),
               person(given = c("S.", "M."),
                      family = "Barbosa",
                      role = "cre",
                      email = "susana.barbosa@fc.up.pt"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'Hmisc', 'knitr', 'marssTMB'

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'BiocStyle'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Maintainer: ‘Kelly McConville <kmcconville@fas.harvard.edu>’

The Description field contains
  (2017) <arXiv:1712.05708>.  The variance estimators which approximate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
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  'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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DESCRIPTION file?
Cannot process vignettes
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  'knitr', 'rmarkdown', 'wallace'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) focalCompare.Rd:14: Lost braces
    14 | \item{fun}{The function fun should take multiple numbers, and return a single number. For example mean, modal, min or max. It should also accept a na.rm argument (or ignore it, e.g. as one of the 'dots' arguments. For example, length will fail, but function(x, ...){na.omit(length(x))} works. (Specifications from `raster::focal`)}
       |                                                                                                                                                                                                                                                                          ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Bill Venables <bill.venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) hr_levels.Rd:9-12: Lost braces
     9 | kernelBiweight <- function(x, mean = 0, sd = 1) {
       |                                                 ^
checkRd: (-1) hr_levels.Rd:33-36: Lost braces
    33 | kernelCosine <- function(x, mean = 0, sd = 1) {
       |                                               ^
checkRd: (-1) hr_levels.Rd:41-44: Lost braces
    41 | kernelEpanechnikov <- function(x, mean = 0, sd = 1) {
       |                                                     ^
checkRd: (-1) hr_levels.Rd:58-61: Lost braces
    58 | kernelOptCosine <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:65-68: Lost braces
    65 | kernelRectangular <- function(x, mean = 0, sd = 1) {
       |                                                    ^
checkRd: (-1) hr_levels.Rd:72-75: Lost braces
    72 | kernelSquaredCosine <- function(x, mean = 0, sd = 1) {
       |                                                      ^
checkRd: (-1) hr_levels.Rd:79-82: Lost braces
    79 | kernelTriangular <- function(x, mean = 0, sd = 1) {
       |                                                   ^
checkRd: (-1) hr_levels.Rd:86-89: Lost braces
    86 | kernelTricube <- function(x, mean = 0, sd = 1) {
       |                                                ^
checkRd: (-1) hr_levels.Rd:93-96: Lost braces
    93 | kernelTriweight <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:100-103: Lost braces
   100 | kernelUniform <- function(x, mean = 0, sd = 1) {
       |                                                ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Erik-Jan van Kesteren <e.vankesteren1@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erik-Jan",
                    family = "van Kesteren",
                    role = c("aut", "cre"),
                    email = "e.vankesteren1@uu.nl")
as necessary.
Packages required but not available: 'formattable', 'visNetwork'

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VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘Nicolas E. Campione <ncampion@une.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nicolas", "E."),
                    family = "Campione",
                    role = c("aut", "cre"),
                    email = "ncampion@une.edu.au")
as necessary.
checkRd: (-1) CF2004.Rd:8: Lost braces; missing escapes or markup?
     8 |   \item{X2}{an optional second variable with same length as \code{X}, should the equation be multiple (see Details) {in mm}}
       |                                                                                                                     ^
Packages required but not available: 'flextable', 'rmarkdown'

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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘James S. Clark <jimclark@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("James", "S."),
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "jimclark@duke.edu")
as necessary.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘matahari-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dance_recital
> ### Title: Create a matahari-esque data frame from a file.
> ### Aliases: dance_recital
> 
> ### ** Examples
> 
> 
> library(knitr)
Error in library(knitr) : there is no package called ‘knitr’
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David Degras <david.degras@umb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Degras",
                    role = c("aut", "cre"),
                    email = "david.degras@umb.edu")
as necessary.
checkRd: (-1) Rand.index.Rd:22: Lost braces; missing escapes or markup?
    22 | The two vectors \code{x} and \code{y} must have equal length. Given a set \eqn{S} and two partitions \eqn{X} and \eqn{Y} of \eqn{S}, the Rand index is the proportion of pairs of elements in \eqn{S} (out of all pairs) that are either concordant in both \eqn{X} and \eqn{Y} (i.e., they belong to the same member of \eqn{X} and to the same member of \eqn{Y}) or discordant (i.e., not concordant) in both \eqn{X} and {Y}.  
       |                                                                                                                                                                                                                                                                                                                                                                                                                              ^
checkRd: (-1) predict.matchFeat.Rd:21: Lost braces
    21 | The function \code{predict.matchFeat} finds the best matching for new feature vectors relative to an existing set of cluster/class centers. If code{object} results from a call to \code{\link{match.gaussmix}}, the same function is used for prediction (with fixed mean vectors and covariance matrices). In other cases, the function \code{\link{match.template}} is used for prediction. 
       |                                                                                                                                                    ^
Package required but not available: ‘rJava’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/matching.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Cannot process vignettes
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  'gurobi', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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DESCRIPTION file?
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
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  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Package required but not available: ‘weights’

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VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/multiMatch_vignette.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
checkRd: (-1) Match.Rd:90: Lost braces; missing escapes or markup?
    90 | expression in braces. For example, the condition "{[ab]*}" is equivalent
       |                                                   ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
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Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'DiagrammeR', 'ggenealogy', 'knitr', 'rmarkdown', 'svgPanZoom'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘P. Roebuck <proebuck1701@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "P.",
                    family = "Roebuck",
                    role = c("aut", "cre"),
                    email = "proebuck1701@gmail.com")
as necessary.
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Package suggested but not available for checking: ‘bookdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'plotly', 'DT'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("aut", "cre"),
                      email = "normmatloff@gmail.com"),
               person(given = "Jack",
                      family = "Norman",
                      role = "aut"))
as necessary.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘Seung W. Choi <schoi@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = c("Seung", "W."),
                      family = "Choi",
                      role = c("aut", "cre"),
                      email = "schoi@austin.utexas.edu"),
               person(given = c("David", "R."),
                      family = "King",
                      role = "aut"))
as necessary.
Cannot process vignettes
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  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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DESCRIPTION file?
Maintainer: ‘Andrea Brancaccio <andrea.brancaccio@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrea",
                      family = "Brancaccio",
                      role = c("aut", "ctb", "cph", "cre"),
                      email = "andrea.brancaccio@unipd.it"),
               person(given = c("Ottavia", "M."),
                      family = "Epifania",
                      role = c("aut", "ctb", "com")),
               person(given = "Debora",
                      family = "de Chiusole",
                      role = "ctb"))
as necessary.
Cannot process vignettes
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  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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Maintainer: ‘S. Thomas Kelly <tomkellygenetics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederick",
                      family = "Novomestky",
                      role = "aut",
                      email = "fnovomes@poly.edu"),
               person(given = c("S.", "Thomas"),
                      family = "Kelly",
                      role = "cre",
                      email = "tomkellygenetics@gmail.com"))
as necessary.
Maintainer: ‘Matthew Cserhati <csmatyi@protonmail.com>’

The Description field contains
  References: Mullner. <ArXiv:1109.2378>; Cserhati, Carter. (2020,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrey A Shabalin <andrey.shabalin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Matrix_eQTL_main.Rd:31: Lost braces; missing escapes or markup?
    31 |     {genepos} in the call of \code{Matrix_eQTL_main} function.
       |     ^
checkRd: (-1) Matrix_eQTL_main.Rd:35: Lost braces; missing escapes or markup?
    35 |     the data frames \code{snpspos} and {genepos}.
       |                                        ^
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Michael P.B. Gallaugher <michael_gallaugher@baylor.edu>’

The Description field contains
  <arXiv:2005.03861>. One key advantage of this model is the ability to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Cannot process vignettes
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  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘column_group_by_drop_default.Rd’ ‘context.Rd’ ‘filter_column.Rd’
    ‘filter_row.Rd’ ‘join.Rd’ ‘row_group_by_drop_default.Rd’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
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Error(s) in re-building vignettes:
  ...
--- re-building ‘matrixStats-methods.md.rsp’ using rsp
Error: processing vignette 'matrixStats-methods.md.rsp' failed with diagnostics:
there is no package called ‘knitr’
--- failed re-building ‘matrixStats-methods.md.rsp’

SUMMARY: processing the following file failed:
  ‘matrixStats-methods.md.rsp’

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘RCLabels’

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  'covr', 'Hmisc', 'knitr', 'matsindf', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘matsbyname’

Packages suggested but not available for checking:
  'covr', 'Hmisc', 'knitr', 'RCLabels', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael P.B. Gallaugher <gallaump@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "P.B."),
                      family = "Gallaugher",
                      role = c("aut", "cre"),
                      email = "gallaump@mcmaster.ca"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Found the following files/directories:
  ‘utilities.R’
Package required but not available: ‘beastier’

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VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Cannot process vignettes
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  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Tom Prior <tomjamesprior@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Prior",
                    role = c("aut", "cre"),
                    email = "tomjamesprior@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘maxcombo-package.Rd’:
    https://doi.org/10.1177/0962280220931560
Package required but not available: ‘groupedHyperframe’

Packages suggested but not available for checking:
  'knitr', 'quarto', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘quarto’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘"Alexander Jueterbock" <Alexander-Jueterbock@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Jueterbock",
                      role = "aut"),
               person(given = "\"Alexander",
                      family = "Jueterbock\"",
                      role = "cre",
                      email = "Alexander-Jueterbock@web.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
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VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) MaxentVariableSelection-package.Rd:46: Lost braces; missing escapes or markup?
    46 | \tab Tyberghein L, Verbruggen H, Pauly K, Troupin C, Mineur F and {De Clerck}, O (2012)\cr
       |                                                                   ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
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Maintainer: ‘Zhenyu Wang <zw425@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhenyu", "Wang;", "Zijian"),
                      family = "Guo",
                      role = "aut"),
               person(given = "Zhenyu",
                      family = "Wang",
                      role = "cre",
                      email = "zw425@stat.rutgers.edu"))
as necessary.

The Description field contains
  shift maximin effect, which was proposed in <arXiv:2011.07568>. It
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ott Toomet <otoomet@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  activePar.Rd: nObs
  nObs.Rd: nParam
  nParam.Rd: nObs
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bowen Deng <baolidakai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bowen",
                    family = "Deng",
                    role = c("aut", "cre"),
                    email = "baolidakai@gmail.com")
as necessary.
Running examples in ‘MaxMC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mmc
> ### Title: Find the Maximized Monte Carlo (MMC) p-value on a set of
> ###   nuisance parameters.
> ### Aliases: mmc
> 
> ### ** Examples
> 
> ## Example 1
> ## Exact Unit Root Test
> library(fUnitRoots)
Error in library(fUnitRoots) : there is no package called ‘fUnitRoots’
Execution halted
Maintainer: ‘Steven Phillips <mrmaxent@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steven",
                    family = "Phillips",
                    role = c("aut", "cre"),
                    email = "mrmaxent@gmail.com")
as necessary.
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shan",
                      family = "Ba",
                      role = c("aut", "cre"),
                      email = "shanbatr@gmail.com"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2', 'devtools', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Cinzia Franceschini <cinziafranceschini@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cinzia",
                      family = "Franceschini",
                      role = c("aut", "cre"),
                      email = "cinziafranceschini@msn.com"),
               person(given = "Nicola",
                      family = "Loperfido",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘devtools’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'leaflet', 'MazamaCoreUtils', 'MazamaSpatialUtils'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available:
  'MazamaSpatialUtils', 'MazamaCoreUtils', 'tmap'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MazamaCoreUtils’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘MazamaCoreUtils’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Meilin Jiang <meilin.jiang@ufl.edu>’

The Description field contains
  <arXiv:2301.10064> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘testthat.R’ [21s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(mbbe)
  > 
  > test_check("mbbe")
  Saving _problems/test-check_requirements-52.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-check_requirements.R:39:3'): check_requirements works ──────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  ℹ Please use `with_mocked_bindings()` instead.
  Backtrace:
      ▆
   1. └─testthat::with_mock(...) at test-check_requirements.R:39:3
   2.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
   3.     └─lifecycle:::deprecate_stop0(msg)
   4.       └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ]
  Error:
  ! Test failures.
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'INLA', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Scott Foster <scott.foster@data61.csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Scott", "D."),
                      family = "Foster",
                      role = "aut"),
               person(given = "Scott",
                      family = "Foster",
                      role = "cre",
                      email = "scott.foster@data61.csiro.au"))
as necessary.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/MBHdesign.rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukasz",
                    family = "Komsta",
                    role = c("aut", "cre"),
                    email = "lukasz.komsta@umlub.pl")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'spelling', 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'keras', 'rgl', 'tensorflow'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'mcmcplots', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

Packages suggested but not available for checking:
  'Hmisc', 'rmarkdown', 'mcmcplots'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jae Keun Yoo <peter.yoo@ewha.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "Keun"),
                    family = "Yoo",
                    role = c("aut", "cre"),
                    email = "peter.yoo@ewha.ac.kr")
as necessary.
checkRd: (-1) SIGMAS.Rd:17: Lost braces; missing escapes or markup?
    17 | Sigmahat =  (Y^{T} Y)/n;
       |                ^
checkRd: (-1) SIGMAS.Rd:18: Lost braces; missing escapes or markup?
    18 | Sigmahat_fit = (Y^{T}  P_fx  Y)/n;
       |                   ^
checkRd: (-1) matpower.Rd:17: Lost braces; missing escapes or markup?
    17 | The function computes M^{power} for a symmetric matrix M. }
       |                         ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Euloge C. Kenne Pagui <kenne@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Euloge", "Clovis", "Kenne"),
                      family = "Pagui",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Sartori",
                      role = "aut"),
               person(given = "Alessandra",
                      family = "Salvan",
                      role = "aut"),
               person(given = c("Euloge", "C.", "Kenne"),
                      family = "Pagui",
                      role = "cre",
                      email = "kenne@stat.unipd.it"))
as necessary.

The Description field contains
  <https://arxiv.org/abs/1604.04768>) to median bias reduction. This
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hung Nguyen <ntthung@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hung",
                    family = "Nguyen",
                    role = c("aut", "cre"),
                    email = "ntthung@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ning Ning <patricianing@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jinwen",
                      family = "Qiu",
                      role = "aut",
                      email = "qjwsnow_ctw@hotmail.com"),
               person(given = "Ning",
                      family = "Ning",
                      role = c("aut", "cre"),
                      email = "patricianing@gmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee15239@gmail.com"),
               person(given = c("Mahlet", "G."),
                      family = "Tadesse",
                      role = "aut"),
               person(given = c("Brent", "A."),
                      family = "Coull",
                      role = "aut"),
               person(given = c("Jacqueline", "R."),
                      family = "Starr",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Rosaria Lombardo <rosaria.lombardo@unicampania.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rosaria",
                      family = "Lombardo",
                      role = c("aut", "cre"),
                      email = "rosaria.lombardo@unicampania.it"),
               person(given = c("Eric", "J"),
                      family = "Beh",
                      role = "aut"))
as necessary.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Laszlo Baranyai <Baranyai.Laszlo@etk.szie.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Laszlo",
                    family = "Baranyai",
                    role = c("aut", "cre"),
                    email = "lbaranyai@atb-potsdam.de")
as necessary.
Packages required but not available:
  'babette', 'beastier', 'devtools', 'mauricer'

Packages suggested but not available for checking:
  'knitr', 'lintr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Holger Schwender <holger.schw@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Schwender",
                    role = c("aut", "cre"),
                    email = "holger.schw@gmx.de")
as necessary.
Package required but not available: ‘rmarkdown’

Packages suggested but not available for checking:
  'formattable', 'tidyverse', 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Heming Deng<dheming@ruc.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Yichen",
                      family = "Qin",
                      role = "aut"),
               person(given = "Heming",
                      family = "Deng",
                      role = c("aut", "cre"),
                      email = "dheming@ruc.edu.cn"))
as necessary.
Maintainer: ‘Ming Gao <gaoming@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "gaoming@umich.edu"),
               person(given = "Jialiang",
                      family = "Li",
                      role = "aut"))
as necessary.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arno Fritsch <arno.fritsch@tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arno",
                    family = "Fritsch",
                    role = c("aut", "cre"),
                    email = "arno.fritsch@tu-dortmund.de")
as necessary.
Maintainer: ‘Chris M Manuel <cmmanuel@stat.tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chris", "M"),
                      family = "Manuel",
                      role = c("aut", "cre"),
                      email = "cmmanuel@stat.tamu.edu"),
               person(given = "Samiran",
                      family = "Sinha",
                      role = "aut"),
               person(given = "Suojin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Hitoshi Iuchi <hiuchi@sfc.keio.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hitoshi",
                    family = "Iuchi",
                    role = c("aut", "cre"),
                    email = "hiuchi@sfc.keio.ac.jp")
as necessary.
Maintainer: ‘Felipe Acosta Archila <acosta.felipe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felipe", "Acosta"),
                    family = "Archila",
                    role = c("aut", "cre"),
                    email = "acosta.felipe@gmail.com")
as necessary.
Maintainer: ‘Ben Sherwood <ben.sherwood@ku.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ben",
                      family = "Sherwood",
                      role = c("aut", "cre"),
                      email = "ben.sherwood@ku.edu"),
               person(given = "Brad",
                      family = "Price",
                      role = "aut"))
as necessary.

The Description field contains
  Sherwood (2018) <arXiv:1707.03530>. The MCEN model simultaneously
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mehmet", "Hakan"),
                    family = "Satman",
                    role = c("aut", "cre"),
                    email = "mhsatman@istanbul.edu.tr")
as necessary.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mcga.Rcheck/00install.out’ for details.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Gregory R. Warnes <greg@warnes.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gregory", "R."),
                      family = "Warnes",
                      role = c("aut", "cre"),
                      email = "greg@warnes.net"),
               person(given = "Robert",
                      family = "Burrows",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘boot.heterogeneity’

Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) MCbound.precalc1.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCtest.Rd:39: Escaped LaTeX specials: \#
checkRd: (-1) MCtest.Rd:40: Escaped LaTeX specials: \#
Maintainer: ‘Zehua Zhou <zehuazho@buffalo.edu>’

The Description field contains
  Bisson and Jiwei Zhao (2021) <arXiv:2108.11589>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Wieland <thomas.wieland.geo@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.geo@googlemail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘yaml’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Elff <mclogit@elff.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Elff",
                    role = c("aut", "cre"),
                    email = "mclogit@elff.eu")
as necessary.
Package required but not available: ‘memisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ronja Foraita <foraita@bips.uni-bremen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Martin", "L."),
                      family = "Jäger",
                      role = "aut"),
               person(given = "Ronja",
                      family = "Foraita",
                      role = "cre",
                      email = "foraita@bips.uni-bremen.de"))
as necessary.
Packages required but not available: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jarrod Hadfield <j.hadfield@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jarrod",
                    family = "Hadfield",
                    role = c("aut", "cre"),
                    email = "j.hadfield@ed.ac.uk")
as necessary.
Maintainer: ‘Mikhail V. Matz <matz@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "V."),
                    family = "Matz",
                    role = c("aut", "cre"),
                    email = "matz@utexas.edu")
as necessary.
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "geyer@umn.edu"),
               person(given = c("Leif", "T."),
                      family = "Johnson",
                      role = "aut",
                      email = "ltjohnson@google.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/mcmcse_vignette.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mark Puttick <mark.puttick@bristol.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Puttick",
                      role = c("aut", "cre"),
                      email = "mark.puttick@bristol.ac.uk"),
               person(given = "Pascal",
                      family = "Title",
                      role = "ctb"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'cmdstanr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'visNetwork', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running ‘testthat.R’ [7s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(mcmodule)
  Loading required package: mc2d
  Loading required package: mvtnorm
  
  Attaching package: 'mc2d'
  
  The following objects are masked from 'package:base':
  
      pmax, pmin
  
  > 
  > test_check("mcmodule")
  Saving _problems/test-mc_network-22.R
  Saving _problems/test-mc_network-106.R
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 267 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-mc_network.R:22:5'): mc_network works ──────────────────────────
  Error in `mc_network(imports_mcmodule)`: This function needs 'visNetwork' and 'igraph' packages.
      Install them using:
           install.packages(c('visNetwork','igraph'))
  Backtrace:
      ▆
   1. └─mcmodule::mc_network(imports_mcmodule) at test-mc_network.R:22:5
  ── Failure ('test-mc_network.R:106:5'): combined nodes mc_network works ────────
  Expected `mc_network(combined_module)` not to throw any errors.
  Actually got a <simpleError> with message:
    This function needs 'visNetwork' and 'igraph' packages.
        Install them using:
             install.packages(c('visNetwork','igraph'))
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 267 ]
  Error:
  ! Test failures.
  Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'ecr', 'qgraph'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Hannah Comiskey <hannah.comiskey.2015@mumail.ie>’

The Description field contains
  <arXiv:2212.03844>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘tidyverse’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘keyring’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zhengyang Zhou <zhengyang.zhou@unthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhengyang",
                    family = "Zhou",
                    role = c("aut", "cre"),
                    email = "zhengyang.zhou@unthsc.edu")
as necessary.
Maintainer: ‘Russell S. Pierce <russell.s.pierce@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Russell", "S."),
                    family = "Pierce",
                    role = c("aut", "cre"),
                    email = "russell.s.pierce@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘summary.mcpmod_simulation.R’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘flextable’

Packages suggested but not available for checking: 'devtools', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bjoern Bornkamp <bornkamp@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bjoern",
                      family = "Bornkamp",
                      role = c("aut", "cre"),
                      email = "bornkamp@statistik.tu-dortmund.de"),
               person(given = "Jose",
                      family = "Pinheiro",
                      role = "aut"),
               person(given = "Frank",
                      family = "Bretz",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Daniel Gerhard <00gerhard@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ahmed N. Albatineh <aalbatineh@hsc.edu.kw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ahmed", "N."),
                      family = "Albatineh",
                      role = c("aut", "cre"),
                      email = "aalbatineh@hsc.edu.kw"),
               person(given = c("Meredith", "L."),
                      family = "Wilcox",
                      role = "aut"),
               person(given = "Bashar",
                      family = "Zogheib",
                      role = "aut"),
               person(given = "Magdalena",
                      family = "Niewiadomska-Bugaj",
                      role = "aut"))
as necessary.
Maintainer: ‘Leopoldo Catania <leopoldo.catania@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Leopoldo", "Catania", "&", "Mauro"),
                      family = "Bernardi",
                      role = "aut"),
               person(given = "Leopoldo",
                      family = "Catania",
                      role = "cre",
                      email = "leopoldo.catania@gmail.com"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘LossVol.Rd’:
    http://dx.doi.org/10.1002/jae.800
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘imcdiag.Rd’:
    https://doi.org/10.17576/jsm-2019-4809-26
checkRd: (-1) eigp.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:41: Escaped LaTeX specials: \&
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

The Description field contains
  described in Gandy and Scott (2020) <arXiv:2001.06465>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial version.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) mcvis.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mcvis.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mcvis.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Ball’

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'kableExtra', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘mgm’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pinp'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Benjamin Christoffersen <boennecd@gmail.com>’

The Description field contains
  <arXiv:2102.02642>. The method is related to Hoff (2007)
  <doi:10.1214/07-AOAS107> and Zhao and Udell (2019) <arXiv:1910.12845>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get_mdgc.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:37: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Maengseok Noh <msnoh@pknu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Youngjo",
                      family = "Lee",
                      role = "aut"),
               person(given = "Marek",
                      family = "Molas",
                      role = "aut"),
               person(given = "Maengseok",
                      family = "Noh",
                      role = c("aut", "cre"),
                      email = "msnoh@pknu.ac.kr"))
as necessary.
Maintainer: ‘Mun-Gwan Hong <mun-gwan.hong@scilifelab.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mun-Gwan",
                    family = "Hong",
                    role = c("aut", "cre"),
                    email = "mun-gwan.hong@scilifelab.se")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) normalizeWithMA.Rd:19: Lost braces
    19 |         \item{expGroup}{ a \code{vector} of experimental grouping variable such as plate. The length of code{expGroup} must be same as the number of rows of \code{mD}.}
       |                                                                                                             ^
Maintainer: ‘Sarah Friedrich <sarah.friedrich@alumni.uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Ditzhaus",
                      role = "aut"),
               person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@alumni.uni-ulm.de"))
as necessary.

The Description field contains
  Ditzhaus, M. and Friedrich, S. (2018) <arXiv:1807.05504>.  Ditzhaus, M.
  and Pauly, M. (2018) <arXiv:1808.05627>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘E. F. Haghish <haghish@uio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("E.", "F."),
                    family = "Haghish",
                    role = c("aut", "cre"),
                    email = "haghish@uio.no")
as necessary.
Maintainer: ‘Alka Benawra <alkabenawra@rogers.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alka",
                    family = "Benawra",
                    role = c("aut", "cre"),
                    email = "alkabenawra@rogers.com")
as necessary.
Packages required but not available:
  'DT', 'leaflet', 'leaflet.extras', 'plotly', 'reactable',
  'htmlwidgets'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Guillaume Chapron <gchapron@carnivoreconservation.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Iadine",
                      family = "Chades",
                      role = "aut"),
               person(given = "Guillaume",
                      family = "Chapron",
                      role = c("aut", "cre"),
                      email = "gchapron@carnivoreconservation.org"),
               person(given = "Marie-Josee",
                      family = "Cros",
                      role = "aut"),
               person(given = "Frederick",
                      family = "Garcia",
                      role = "aut"),
               person(given = "Regis",
                      family = "Sabbadin",
                      role = "aut"))
as necessary.
checkRd: (-1) mdp_example_forest.Rd:36: Lost braces; missing escapes or markup?
    36 | Let {1, ... S} be the states of the forest. the Sth state being the oldest.
       |     ^
Maintainer: ‘Genzo Kaga <genzo.k-1321@ruri.waseda.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Genzo",
                    family = "Kaga",
                    role = c("aut", "cre"),
                    email = "genzo.k-1321@ruri.waseda.jp")
as necessary.
Maintainer: ‘Antonio Hermes M. da Silva-Junior <hermes@ccet.ufrn.br>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'smacof', 'rgl'

Package suggested but not available for checking: ‘qtl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'smacof', 'symbolicDA'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'htmlwidgets', 'kableExtra', 'skimr'

Packages suggested but not available for checking:
  'etl', 'knitr', 'leaflet', 'macleish', 'mosaic'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Takumi Tsutaya <tsutayatakumi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takumi",
                    family = "Tsutaya",
                    role = c("aut", "cre"),
                    email = "tsutayatakumi@gmail.com",
                    comment = c(ORCID = "0000-0001-5104-5223"))
as necessary.
Packages required but not available: 'kableExtra', 'knitr', 'tidyverse'

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'cmdstanr', 'knitr', 'rmarkdown', 'roxygen2', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'visOmopResults', 'knitr', 'rmarkdown', 'gt', 'flextable'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Mark Edmondson <r@sunholo.com>’

The BugReports field in DESCRIPTION has
  https://github.com/MarkEdmondson1234/measurementProtocol
which should likely be
  https://github.com/MarkEdmondson1234/measurementProtocol/issues
instead.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
Maintainer: ‘Fred Viole <fviole@fordham.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hrishikesh", "D."),
                      family = "Vinod",
                      role = "aut",
                      email = "Vinod@fordham.edu"),
               person(given = "Javier",
                      family = "López-de-Lacalle",
                      role = "aut",
                      email = "javlacalle@yahoo.es"),
               person(given = "Fred",
                      family = "Viole",
                      role = c("aut", "cre"),
                      email = "fviole@fordham.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘latentnet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Linda Nab <lindanab4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Linda",
                    family = "Nab",
                    role = c("aut", "cre"),
                    email = "lindanab4@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘GUniFrac’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sergio Venturini <sergio.venturini@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sergio",
                      family = "Venturini",
                      role = c("aut", "cre"),
                      email = "sergio.venturini@unicatt.it"),
               person(given = "Jessica",
                      family = "Myers",
                      role = "aut"))
as necessary.
checkRd: (-1) bhm.mcmc.Rd:37: Lost braces; missing escapes or markup?
    37 |   where \eqn{N_{ij}} denotes the number of times that the error profile \eqn{i} is cited on a report from hospital {j} and \eqn{y_{ij}} is the corresponding number of times that profile \eqn{i} in hospital \eqn{j} was reported with harm.
       |                                                                                                                    ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) strings-internal.Rd:14: Lost braces
    14 | code{stringPlaceExact}: find location of string, using exact match
       |     ^
checkRd: (-1) strings-internal.Rd:17: Lost braces
    17 | code{stringPlaceFuzzy}: find location of string, using partial match
       |     ^
checkRd: (-1) strings-internal.Rd:19: Lost braces
    19 | code{stringPlace}: find location of string, generic
       |     ^
checkRd: (-1) strings-internal.Rd:21: Lost braces
    21 | code{checkFuzzy}: check for "close" string matches
       |     ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Zizhuo Ren<zizhuoren@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zizhuo",
                      family = "Ren",
                      role = c("aut", "cre"),
                      email = "zizhuoren@gmail.com"),
               person(given = "Hesen",
                      family = "Peng",
                      role = "aut"),
               person(given = "Tianwei",
                      family = "Yu",
                      role = "aut"))
as necessary.
Package required but not available: ‘flextable’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Gautier Paux <gautier@paux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gautier",
                      family = "Paux",
                      role = c("aut", "cre"),
                      email = "gautier@paux.fr"),
               person(given = "Alex",
                      family = "Dmitrienko.",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CaseStudy02
    From: inst/doc/case-studies.html
Cannot process vignettes
Packages suggested but not available for checking:
  'flextable', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Chao Cheng <c.cheng@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chao", "Cheng;", "Donna", "Spiegelman;", "Fan"),
                      family = "Li",
                      role = "aut"),
               person(given = "Chao",
                      family = "Cheng",
                      role = "cre",
                      email = "c.cheng@yale.edu"))
as necessary.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xu Qin <xuqin@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@pitt.edu"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"))
as necessary.
Package required but not available: ‘mediation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'learnr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'wordcloud2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Maintainer: ‘Gary Chan <kcgchan@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gary",
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "kcgchan@u.washington.edu")
as necessary.

The Description field contains
  effects by Chan, Imai, Yam and Zhang (2016) <arXiv:1601.03501>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) MED.Rd:25: Lost braces
    25 | The vector of treatment assignments of length \eqn{n}. Must be coded as \eqn{\{0,1} {{0,1}}.
       |                                                                                     ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Walter K Kremers <kremers.walter@mayo.edu>’

The Description field contains
  <arXiv:2106.14063> and is an extension of the works by Chen Y-H, Chen
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Won-Min Song <wonmin1984@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Won-Min",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "wonmin1984@gmail.com"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Found the following files/directories:
  ‘Data_Correlation.txt’ ‘correlation_FDR_table.txt’
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/article.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Karsten Donnay <kdonnay@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karsten",
                      family = "Donnay",
                      role = c("aut", "cre"),
                      email = "kdonnay@gmx.net"),
               person(given = "Eric",
                      family = "Dunford",
                      role = "aut"))
as necessary.
Package required but not available: ‘leaflet’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DT', 'formattable', 'plotly'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'ggimage', 'knitr', 'rmarkdown', 'prettydoc', 'shadowtext'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘colourpicker’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/memgeneTutorial.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bert Gunter <bgunter.4567@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bert",
                    family = "Gunter",
                    role = c("aut", "cre"),
                    email = "bgunter.4567@gmail.com")
as necessary.
Package required but not available: ‘yaml’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Roy Wetherall <rwetherall@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roy",
                    family = "Wetherall",
                    role = c("aut", "cre"),
                    email = "rwetherall@gmail.com")
as necessary.
Packages required but not available:
  'bookdown', 'distill', 'rmarkdown', 'rmdformats', 'usethis'

Packages suggested but not available for checking: 'knitr', 'pkgdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Meilstrup <peter.meilstrup@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Meilstrup",
                    role = c("aut", "cre"),
                    email = "peter.meilstrup@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
File ‘memo/libs/memo.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘PRCODE’
These entry points may be removed soon:
‘BODY’, ‘FORMALS’, ‘CLOENV’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Blas M. Benito <blasbenito@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Blas", "M."),
                    family = "Benito",
                    role = c("aut", "cre"),
                    email = "blasbenito@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘computeMemory.Rd’:
    https://doi.org/10.18637/jss.v077.i01
    https://doi.org/10.1023/A:1010933404324
Package required but not available: ‘HH’

Packages suggested but not available for checking:
  'devtools', 'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'yaml', 'rmarkdown', 'knitr'

Package suggested but not available for checking: ‘kableExtra’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Steve Walker <steve.walker@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Douglas",
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut",
                      email = "maechler@R-project.org"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut",
                      email = "bbolker@gmail.com"),
               person(given = "Steve",
                      family = "Walker",
                      role = "cre",
                      email = "steve.walker@utoronto.ca"))
as necessary.
checkRd: (-1) Soybean.Rd:15: Escaped LaTeX specials: \#
checkRd: (-1) Soybean.Rd:33: Escaped LaTeX specials: \#
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'knitr', 'rmarkdown', 'plotly'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Martin Wiegand <Martin.Wiegand@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Wiegand",
                      role = c("aut", "cre"),
                      email = "martin.wiegand@manchester.ac.uk"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘randomizeR’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'mergen', 'htmlwidgets', 'shiny.i18n', 'yaml', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'DT', 'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Richard A. Bilonick <rabilonick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Richard", "A."),
                    family = "Bilonick",
                    role = c("aut", "cre"),
                    email = "rabilonick@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rstanarm', 'DT'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'ggformula', 'kinship2'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘gt’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘François Grolleau <francois.grolleau@aphp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "François",
                    family = "Grolleau",
                    role = c("aut", "cre"),
                    email = "francois.grolleau@aphp.fr")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jingyi Guo <jingyi.guo@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jingyi",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "jingyi.guo@ntnu.no"),
               person(given = "Andrea",
                      family = "Riebler",
                      role = "aut",
                      email = "andrea.riebler@ntnu.no"))
as necessary.
Maintainer: ‘Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jack",
                      family = "Bowden",
                      role = "aut",
                      email = "j.bowden@bristol.ac.uk",
                      comment = "conception"),
               person(given = "Christopher",
                      family = "Jackson",
                      role = c("aut", "cre"),
                      email = "chris.jackson@mrc-bsu.cam.ac.uk",
                      comment = "programming"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘MetaAnalyser.Rd’:
    http://dx.doi.org/10.1080/00031305.2016.1165735
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xin Yang <xyang.krystal@gmail.com>’

The Description field contains
  Luo et al. (2016) <arXiv:1505.05687>, sample standard deviation
  estimators by Wan et al. (2014) <arXiv:1407.8038>, and the best linear
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'devtools', 'knitr', 'mdrb', 'rmarkdown', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Claire Gormley <claire.gormley@ucd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nyamundanda",
                      family = "Gift",
                      role = "aut"),
               person(given = c("Isobel", "Claire"),
                      family = "Gormley",
                      role = "aut"),
               person(given = "Lorraine",
                      family = "Brennan.",
                      role = "aut"),
               person(given = "Claire",
                      family = "Gormley",
                      role = "cre",
                      email = "claire.gormley@ucd.ie"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'usethis', 'ggimage', 'rmarkdown'

Packages suggested but not available for checking:
  'knitr', 'Rd2roxygen', 'kableExtra', 'downloadthis', 'spelling'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'survminer', 'rms'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Monica Calderon-Santiago <b42casam@uco.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monica",
                    family = "Calderon-Santiago",
                    role = c("aut", "cre"),
                    email = "b42casam@uco.es")
as necessary.
Package required but not available: ‘factoextra’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'roxygen2', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘compareDF’

Packages suggested but not available for checking:
  'metaumbrella', 'epiR', 'knitr', 'DT', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Found the following files/directories:
  ‘cycHumanBloodData.csv’ ‘cycHumanBloodDesign.csv’
  ‘cycMouseLiverProtein.txt’ ‘cycMouseLiverRNA.csv’ ‘cycSimu4h2d.csv’
  ‘cycYeastCycle.csv’ ‘example’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ajay Arunachalam <ajay.arunachalam08@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ajay",
                    family = "Arunachalam",
                    role = c("aut", "cre"),
                    email = "ajay.arunachalam08@gmail.com")
as necessary.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/metafolio.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Lu Tang <lutang@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Tang",
                      role = c("aut", "cre"),
                      email = "lutang@umich.edu"),
               person(given = "Ling",
                      family = "Zhou",
                      role = "aut"),
               person(given = c("Peter", "X.K."),
                      family = "Song",
                      role = "aut"))
as necessary.
checkRd: (-1) datagenerator.Rd:17: Lost braces; missing escapes or markup?
    17 | Returns data frame with \code{n*K} rows (if \code{n} is a scalar), or \code{sum(n)} rows (if \code{n} is a \code{K}-element vector). The data frame contains columns "y", "x1", \dots, "x_{p-1}" and "group" if \code{family="gaussian"}, \code{"binomial"} or \code{"poisson"}; or contains columns "time", "status", "x1", \dots, "x_{p-1}" and "group" if \code{family="cox"}.
       |                                                                                                                                                                                           ^
checkRd: (-1) datagenerator.Rd:17: Lost braces; missing escapes or markup?
    17 | Returns data frame with \code{n*K} rows (if \code{n} is a scalar), or \code{sum(n)} rows (if \code{n} is a \code{K}-element vector). The data frame contains columns "y", "x1", \dots, "x_{p-1}" and "group" if \code{family="gaussian"}, \code{"binomial"} or \code{"poisson"}; or contains columns "time", "status", "x1", \dots, "x_{p-1}" and "group" if \code{family="cox"}.
       |                                                                                                                                                                                                                                                                                                                                        ^
Cannot process vignettes
Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'rmarkdown', 'devtools', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Marc J. Lajeunesse <lajeunesse@usf.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'DT', 'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ville Satopää <ville.satopaa@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  (2020) <arXiv:2010.09971>.  A meta-analysis framework along with two
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Frederico Mestre <mestre.frederico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederico",
                      family = "Mestre",
                      role = c("aut", "cre"),
                      email = "mestre.frederico@gmail.com"),
               person(given = "Fernando",
                      family = "Canovas",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Risk",
                      role = "aut"),
               person(given = "Ricardo",
                      family = "Pita",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Mira",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Beja.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'gt', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'reactable', 'plotly'

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘reactable’

Packages suggested but not available for checking:
  'knitr', 'table1', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Samuel Blanck <samuel.blanck@univ-lille.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillemette",
                      family = "Marot",
                      role = c("aut", "cre")),
               person(given = "Samuel",
                      family = "Blanck",
                      role = "cre",
                      email = "samuel.blanck@univ-lille.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'KODAMA', 'qsmooth', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'prettydoc', 'Hmisc', 'networkD3', 'ggpmisc',
  'ggtree'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'visNetwork', 'ggimage'

Packages suggested but not available for checking:
  'spelling', 'covr', 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘textstem’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'DT', 'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Jason Griffin <jasongriffin138@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following HTML validation problems:
metap.html:530:1 (dat.metap.Rd:18): Warning: <script> anchor "MathJax-script" already defined
metap.html:744:33 (invchisq.Rd:8): Warning: <script> anchor "MathJax-script" already defined
metap.html:877:47 (invt.Rd:5): Warning: <script> anchor "MathJax-script" already defined
metap.html:1002:43 (logitp.Rd:6): Warning: <script> anchor "MathJax-script" already defined
metap.html:1112:45 (meanp.Rd:6): Warning: <script> anchor "MathJax-script" already defined
metap.html:1212:7 (meanz.Rd:6): Warning: <script> anchor "MathJax-script" already defined
metap.html:1440:54 (schweder.Rd:6): Warning: <script> anchor "MathJax-script" already defined
metap.html:1627:22 (sumlog.Rd:10): Warning: <script> anchor "MathJax-script" already defined
metap.html:1760:47 (sump.Rd:6): Warning: <script> anchor "MathJax-script" already defined
metap.html:1869:50 (sumz.Rd:7): Warning: <script> anchor "MathJax-script" already defined
metap.html:2025:19 (truncated.Rd:8): Warning: <script> anchor "MathJax-script" already defined
metap.html:2253:52 (votep.Rd:6): Warning: <script> anchor "MathJax-script" already defined
metap.html:2368:49 (wilkinsonp.Rd:10): Warning: <script> anchor "MathJax-script" already defined
Maintainer: ‘Sora Yoon <ysora90@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sora",
                    family = "Yoon",
                    role = c("aut", "cre"),
                    email = "ysora90@gmail.com")
as necessary.
Package required but not available: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘metaRangePriorityQueue.Rd’ ‘metaRangeProcess.Rd’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Nanami Taketomi <nnmamikrn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nanami",
                      family = "Taketomi",
                      role = c("aut", "cre"),
                      email = "nnmamikrn@gmail.com"),
               person(given = "Takeshi",
                      family = "Emura",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'InteractiveComplexHeatmap', 'clv', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'shinystan'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Ilja M. Nolte <i.m.nolte@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ilja", "M."),
                    family = "Nolte",
                    role = c("aut", "cre"),
                    email = "i.m.nolte@umcg.nl")
as necessary.
Maintainer: ‘Ingmar Visser <i.visser@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hilde", "M.", "Huizenga", "&", "Ingmar"),
                      family = "Visser",
                      role = "aut"),
               person(given = "Ingmar",
                      family = "Visser",
                      role = "cre",
                      email = "i.visser@uva.nl"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘metaConvert’

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'spelling', 'DT', 'epiR'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = "Rui",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.
Maintainer: ‘Min Lu <m.lu6@umiami.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Min",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "m.lu6@umiami.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Blake Robert Mills <blakerobertmills@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Blake", "Robert"),
                    family = "Mills",
                    role = c("aut", "cre"),
                    email = "blakerobertmills@gmail.com")
as necessary.
Maintainer: ‘Laura Mack <laum52@zedat.fu-berlin.de>’

The Description field contains
  <arXiv:2208.11438>].
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'worldmet'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
'library' or 'require' call not declared from: ‘xts’
Cannot process vignettes
Packages suggested but not available for checking:
  'keyring', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Cory Merow <cory.merow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andy",
                      family = "Rominger",
                      role = "aut"),
               person(given = "Cory",
                      family = "Merow",
                      role = c("aut", "cre"),
                      email = "cory.merow@gmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ebar.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘ipd.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘meteESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘meteSSF.Rd’:
    \keyword{METE,}
    \keyword{multiplier,}
  File ‘predictESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘print.meteESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘sad.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘spd.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'prettydoc', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mark Chaffin <mac8278@mail.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Chaffin",
                    role = c("aut", "cre"),
                    email = "mac8278@mail.harvard.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Found the following files/directories:
  ‘MetProc_output.pdf’ ‘sample_removed.csv’ ‘sample_retained.csv’
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'apsimx'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'INLA', 'plotly', 'leaflet', 'mapview'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘yaml’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'riskRegression', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Adam L. Pintar <adam.pintar@nist.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Adam", "L."),
                      family = "Pintar",
                      role = c("aut", "cre"),
                      email = "adam.pintar@nist.gov"),
               person(given = c("Zachary", "H."),
                      family = "Levine",
                      role = "aut"))
as necessary.
Maintainer: ‘Hadrien Charvat  <h.charvat.ef@juntendo.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hadrien",
                      family = "Charvat",
                      role = c("aut", "cre"),
                      email = "h.charvat.ef@juntendo.ac.jp"),
               person(given = "Aurelien",
                      family = "Belot",
                      role = "aut"),
               person(given = "Juste",
                      family = "Goungounga",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Cai Li <cai.li.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cai",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "cai.li.stats@gmail.com"),
               person(given = "Luo",
                      family = "Xiao",
                      role = "aut"))
as necessary.
Packages required but not available: 'devtools', 'tidyverse'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
'library' or 'require' call not declared from: ‘tibble’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'FactoMineR', 'Hmisc'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Onno Kleen <r@onnokleen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Mehmet Balcilar <mehmet@mbalcilar.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mehmet",
                    family = "Balcilar",
                    role = c("aut", "cre"),
                    email = "mehmet@mbalcilar.net")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘Ball’

Packages suggested but not available for checking: 'knitr', 'pkgdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Michael Messer <messer@math.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Messer",
                      role = c("aut", "cre"),
                      email = "messer@math.uni-frankfurt.de"),
               person(given = "Stefan",
                      family = "Albert",
                      role = "aut"),
               person(given = "Solveig",
                      family = "Plomer",
                      role = "aut"),
               person(given = "Gaby",
                      family = "Schneider",
                      role = "aut"))
as necessary.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Maintainer: ‘William H. Asquith <wasquith@usgs.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("William", "H."),
                      family = "Asquith",
                      role = c("aut", "cre"),
                      email = "wasquith@usgs.gov"),
               person(given = c("John", "F."),
                      family = "England",
                      role = c("aut", "ctb")),
               person(given = c("George", "R."),
                      family = "Herrmann",
                      role = "ctb"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rgl', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘read_mgi_biotype_conflict_rpt.R’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Masatoshi Katabuchi <mattocci27@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Masatoshi",
                      family = "Katabuchi",
                      role = c("aut", "cre"),
                      email = "mattocci27@gmail.com"),
               person(given = "Akihiro",
                      family = "Nakamura",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juhyun Kim <juhkim111@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yiwen",
                      family = "Zhang",
                      role = "aut",
                      email = "zhangyiwen1015@gmail.com"),
               person(given = "Hua",
                      family = "Zhou",
                      role = "aut",
                      email = "huazhou@ucla.edu"),
               person(given = "Juhyun",
                      family = "Kim",
                      role = "cre",
                      email = "juhkim111@ucla.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Safiye Celik <safiye@cs.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Safiye",
                    family = "Celik",
                    role = c("aut", "cre"),
                    email = "safiye@cs.washington.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Packages required but not available: 'Hmisc', 'qgraph'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Maintainer: ‘Nathan Carr <nathan.carr@maxar.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nathan",
                    family = "Carr",
                    role = c("aut", "cre"),
                    email = "nathan.carr@maxar.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Maintainer: ‘Irina Gaynanova <irinagn@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irina",
                    family = "Gaynanova",
                    role = c("aut", "cre"),
                    email = "irinagn@umich.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'leaflet', 'knitr', 'mapview'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>’

The BugReports field in DESCRIPTION has
  https://github.com/richelbilderbeek/mhcnuggetsr
which should likely be
  https://github.com/richelbilderbeek/mhcnuggetsr/issues
instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kobi Perl <kobipe3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kobi",
                    family = "Perl",
                    role = c("aut", "cre"),
                    email = "kobipe3@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jared O'Connell <jaredoconnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jared",
                      family = "O'Connell",
                      role = c("aut", "cre"),
                      email = "jaredoconnell@gmail.com"),
               person(given = "Søren",
                      family = "Højsgaard",
                      role = "aut",
                      email = "sorenh@math.aau.dk"))
as necessary.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/vignette1.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
Maintainer: ‘Mohammed Sedki <Mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘MHTrajectoryR-package.Rd’:
    \keyword{Binary data, logistic regression, Metropo [TRUNCATED]
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown', 'modelsummary'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘imp4p’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'DAPAR'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) MIAmaxent-package.Rd:28-29: height/width attributes should be in pixels
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yannick Marcon <yannick.marcon@obiba.org>’

The BugReports field in DESCRIPTION has
  https://github.com/obiba/micar
which should likely be
  https://github.com/obiba/micar/issues
instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘rms’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'bookdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = "Geraldine",
                      family = "Henningsen",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/micEcon/micEconCES
which should likely be
  https://github.com/micEcon/micEconCES/issues
instead.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sam Wilson <samwilson303@gmail.com>’

The Description field contains
  model by Stekhoven and Buhlmann <arXiv:1105.0828> to impute missing
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running ‘testthat.R’ [36s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(mice)
  
  Attaching package: 'mice'
  
  The following object is masked from 'package:stats':
  
      filter
  
  The following objects are masked from 'package:base':
  
      cbind, rbind
  
  > 
  > test_check("mice")
  Saving _problems/test-mice.impute.2l.bin-32.R
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 379 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • empty test (2): ,
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-mice.impute.2l.bin.R:30:1'): (code run outside of `test_that()`) ──
  Error: object 'ID' not found
  Backtrace:
      ▆
   1. ├─... %>% dplyr::select(-month) at test-mice.impute.2l.bin.R:30:1
   2. ├─dplyr::select(., -month)
   3. ├─tidyr::fill(., treatment)
   4. ├─tidyr::complete(toenail, ID, visit)
   5. └─tidyr:::complete.data.frame(toenail, ID, visit)
   6.   ├─tidyr::expand(data, ...)
   7.   └─tidyr:::expand.data.frame(data, ...)
   8.     └─tidyr:::grid_dots(..., `_data` = data)
   9.       └─rlang::eval_tidy(dot, data = mask)
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 379 ]
  Error:
  ! Test failures.
  Execution halted
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
No examples, no tests, no vignettes
Packages suggested but not available for checking:
  'MVN', 'knitr', 'roxygen2', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/paper.Rnw’
   ‘inst/doc/tolatex-examples.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Aurelie Bertrand <aurelie.bertrand@uclouvain.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aurelie",
                      family = "Bertrand",
                      role = c("aut", "cre"),
                      email = "aurelie.bertrand@uclouvain.be"),
               person(given = "Catherine",
                      family = "Legrand",
                      role = "aut"),
               person(given = "Ingrid",
                      family = "Van Keilegom",
                      role = "aut"))
as necessary.
Running examples in ‘MIC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: table
> ### Title: Table
> ### Aliases: table table.default table.mic_validation
> 
> ### ** Examples
> 
> gold_standard <- c("<0.25", "8", "64", ">64")
> test <- c("<0.25", "2", "16", "64")
> val <- compare_mic(gold_standard, test)
> table(val)
Error in loadNamespace(x) : there is no package called ‘flextable’
Calls: table ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
subset.mic_validation 5.485  0.163   7.012
as.sir_vectorised     4.890  0.169   6.185
Maintainer: ‘Seong Hyun Hwang <krshh1412@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seong", "Hyun", "Hwang", "with", "contributions", "from", "Rachel", "Myoung"),
                      family = "Moon",
                      role = "aut"),
               person(given = c("Seong", "Hyun"),
                      family = "Hwang",
                      role = "cre",
                      email = "krshh1412@gmail.com"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘modeest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘survminer’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘visNetwork’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api.R’ ‘handlers-static.R’ ‘static-assets.Rd’
Packages required but not available: 'DT', 'ggiraph'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'pins', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Nancy R Xu <nancyranxu@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘adjusted.predictors.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
  File ‘micromacro.lm.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
    \keyword{variables,}
  File ‘micromacro.summary.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
Error(s) in re-building vignettes:
  ...
--- re-building ‘Introduction_Guide.Rnw’ using Sweave

Error: processing vignette 'Introduction_Guide.Rnw' failed with diagnostics:
 chunk 1 (label = setup) 
Error in library(knitr) : there is no package called ‘knitr’

--- failed re-building ‘Introduction_Guide.Rnw’

SUMMARY: processing the following file failed:
  ‘Introduction_Guide.Rnw’

Error: Vignette re-building failed.
Execution halted
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_dependencies.R’ ‘micromodal.R’ ‘micromodal.Rd’
    ‘use_micromodal.R’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Lars Snipen <lars.snipen@nmbu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lars",
                      family = "Snipen",
                      role = c("aut", "cre"),
                      email = "lars.snipen@nmbu.no"),
               person(given = c("Kristian", "Hovde"),
                      family = "Liland",
                      role = "aut"))
as necessary.
Packages required but not available: 'Hmisc', 'HH', 'flextable'

Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'htmlTable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘visNetwork’

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'blastula', 'emayili'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'xlsx', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'quarto', 'modelsummary'

VignetteBuilder package required for checking but not installed: ‘quarto’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Su Liwen <cpusullivan@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Su",
                    family = "Liwen",
                    role = c("aut", "cre"),
                    email = "cpusullivan@163.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'roxygen2'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Nicholas Jhirad <lostnfound@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Jhirad",
                    role = c("aut", "cre"),
                    email = "lostnfound@gmail.com")
as necessary.
Maintainer: ‘Philipp Gaffert <philipp.gaffert@web.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'kableExtra', 'knitr', 'midfielddata', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peter Ziegler <peter.ziegler@zi-mannheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Wellek",
                      role = "aut"),
               person(given = "Peter",
                      family = "Ziegler",
                      role = c("aut", "cre"),
                      email = "peter.ziegler@zi-mannheim.de"))
as necessary.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘flexImputeModel.R’
Package required but not available: ‘ergm’

Packages suggested but not available for checking: 'covr', 'roxygen2'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘detect_segments.R’ ‘find_best_split.R’ ‘identify_migrations.R’
    ‘utils.R’
Maintainer: ‘Gergely Daróczi <daroczig@rapporter.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lajos",
                      family = "Bálint",
                      role = "aut",
                      email = "balint@demografia.hu"),
               person(given = "Gergely",
                      family = "Daróczi",
                      role = c("aut", "cre"),
                      email = "daroczig@rapporter.net"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) miive.Rd:120-239: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:241-264: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:266-277: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:279-286: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:288-293: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:295-311: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:313-337: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:339-352: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:353-370: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:426: Lost braces
   426 | \link{MIIVsem}{miivs}
       |               ^
checkRd: (-1) miivs.Rd:33-160: Lost braces in \itemize; meant \describe ?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'roxygen2', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zheng-Zheng",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "tang@biostat.wisc.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'Hmisc', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]’
  Authors@R: ‘Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]’
Maintainer: ‘Genevieve Robin <genevieve.robin@polytechnique.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Geneviève",
                      family = "Robin",
                      role = "aut"),
               person(given = "Genevieve",
                      family = "Robin",
                      role = "cre",
                      email = "genevieve.robin@polytechnique.edu"))
as necessary.

The Description field contains
  <arXiv:1806.09734>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘FactoMineR’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Qu Tang <tang.q@northeastern.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘dygraphs’

Package suggested but not available for checking: ‘pkgdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘shinybusy’

Packages suggested but not available for checking:
  'roxygen2', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mingcong Wu <wumingcong@ruc.edu.cn>’

The Description field contains
  <arXiv:2309.15585>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Allison Throm <throm@wustl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allison",
                    family = "Throm",
                    role = c("aut", "cre"),
                    email = "throm@wustl.edu")
as necessary.
Maintainer: ‘Chia-Wei Hsu <Chia-Wei.Hsu@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Wei",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "chia-wei.hsu@stjude.org"),
               person(given = "Fang",
                      family = "Wang",
                      role = "aut"),
               person(given = "Rongji",
                      family = "Mu",
                      role = "aut"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"),
               person(given = "Guoying",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Dianpeng Wang <wdp@bit.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dianpeng",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wdp@bit.edu.cn"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Specified C++11: support will be removed soon
Maintainer: ‘Michele Filosi <michele.filosi@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘InteractiveComplexHeatmap’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown', 'covr', 'testthis', 'roxygen2',
  'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Jorge Luis Ojeda Cabrera <jojeda@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jorge", "Luis", "Ojeda"),
                    family = "Cabrera",
                    role = c("aut", "cre"),
                    email = "jojeda@unizar.es")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘makeWidgetCmd.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘mapFuncToWidget.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUI.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUIhelpers.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUIinputWidget.Rd’:
    \keyword{
        
        utilities
        misc
      }
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate.R’ ‘formula.R’ ‘toy_data.R’
Running examples in ‘miniLNM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ansi_aware_handler
> ### Title: Pretty Printing
> ### Aliases: ansi_aware_handler
> 
> ### ** Examples
> 
> knitr::knit_hooks$set(output = ansi_aware_handler)
Error in loadNamespace(x) : there is no package called ‘knitr’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Shwetank Lall <shwetanklall@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Packages required but not available: 'colourpicker', 'rhandsontable'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘s3methods.R’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Man Jin <mj2149@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Man",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "mj2149@gmail.com"),
               person(given = "Adam",
                      family = "Polis",
                      role = "aut"),
               person(given = "Jonathan",
                      family = "Hartzel",
                      role = "aut"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Joe Cheng [cre, aut], Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Joe Cheng [cre, aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Sebastian O. Schneider <sschneider@coll.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "O."),
                      family = "Schneider",
                      role = c("aut", "cre"),
                      email = "sschneider@coll.mpg.de"),
               person(given = "Giulia",
                      family = "Baldini",
                      role = "aut"))
as necessary.
Packages required but not available: 'quanteda', 'quanteda.textmodels'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Katharine M. Mullen <mullenkate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timur", "V."),
                      family = "Elzhov",
                      role = "aut"),
               person(given = c("Katharine", "M."),
                      family = "Mullen",
                      role = c("aut", "cre"),
                      email = "mullenkate@gmail.com"),
               person(given = "Andrej-Nikolai",
                      family = "Spiess",
                      role = "aut"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut"))
as necessary.
Maintainer: ‘Jixiang Wu <jixiang.wu@sdstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jixiang",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "jixiang.wu@sdstate.edu")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'pkgdown', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) gof.estimates.Rd:59-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gof.estimates.Rd:63-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gof.estimates.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:63-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:71-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:92-95: Lost braces in \itemize; meant \describe ?
Package required but not available: ‘shiny.i18n’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David Moriña <dmorina@ub.edu>’

The Description field contains
  Hernández-Herrera G, Moriña D, Navarro A. (2020) <arXiv:2007.15031>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sim.data.Rd:11: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:12: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:14: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:15: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:16: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:17: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:27: Lost braces in \enumerate; meant \describe ?
Packages required but not available: 'GUniFrac', 'mixtools'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'kableExtra'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Cristian Yones <cyones@sinc.unl.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cristian",
                    family = "Yones",
                    role = c("aut", "cre"),
                    email = "cyones@sinc.unl.edu.ar")
as necessary.
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Siyao",
                      family = "Liu",
                      role = "aut"))
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Specified C++11: support will be removed soon
Problems with news in ‘NEWS.md’:
No news entries found.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dai",
                      family = "Feng",
                      role = "aut"),
               person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘misc3d-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: contour3d
> ### Title: Draw an Isosurface, a Three Dimension Contour Plot
> ### Aliases: contour3d
> ### Keywords: hplot
> 
> ### ** Examples
> 
>   #Example 1: Draw a ball
>   f <- function(x, y, z)x^2+y^2+z^2
>   x <- seq(-2,2,len=20)
>   contour3d(f,4,x,x,x)
Error in loadRGL() : rgl is mot available
Calls: contour3d -> drawScene.rgl -> loadRGL
Execution halted
'library' or 'require' call not declared from: ‘maps’
Maintainer: ‘Dai Feng <daifeng.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dai",
                    family = "Feng",
                    role = c("aut", "cre"),
                    email = "daifeng.stat@gmail.com")
as necessary.
Package required but not available: ‘roxygen2’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'ANCOMBC', 'devtools', 'DT', 'formattable', 'gghalves', 'glmulti',
  'gtsummary', 'knitr', 'mixtools', 'networkD3', 'pak', 'pkgnet',
  'plotly', 'rmarkdown', 'SRS', 'venneuler', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘MiscMetabar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tbl_sum_taxtable
> ### Title: Summarize a tax_table (taxonomic slot of phyloseq object) using
> ###   gtsummary
> ### Aliases: tbl_sum_taxtable
> 
> ### ** Examples
> 
> tbl_sum_taxtable(data_fungi_mini)
Error in loadNamespace(x) : there is no package called ‘gtsummary’
Calls: tbl_sum_taxtable ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
LCBD_pq    4.899  0.339   6.865
ggscatt_pq 4.224  0.071   5.672
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = "Ott",
                      family = "Toomet",
                      role = "aut"))
as necessary.
checkRd: (-1) sumKeepAttr.Rd:19: Lost braces
    19 |       (only relevant if code{x} has only one element).}
       |                             ^
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'forrel', 'pedtools', 'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zishu Zhan <zishu927@hotmail.com>’

The Description field contains
  Xiangjie Li and Jingxiao Zhang. (2022) <arXiv:2205.14994>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Faisal Maqbool Zahid <faisalmz99@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Faisal", "Maqbool"),
                    family = "Zahid",
                    role = c("aut", "cre"),
                    email = "faisalmz99@yahoo.com")
as necessary.
Maintainer: ‘Chong Wu <wuxx0845@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chong",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wuxx0845@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

The Description field contains
  A, Cabaña, A, Puig P. (2021) <arXiv:2003.09202v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'Hmisc', 'missMDA'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘factoextra’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'rms', 'relsurv'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Moritz Marbach <moritz.marbach@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Moritz",
                    family = "Marbach",
                    role = c("aut", "cre"),
                    email = "moritz.marbach@tamu.edu")
as necessary.

The Description field contains
  <arXiv:2107.05427>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘BCEA’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘FactoMineR’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sara Rejeb <sara.rejeb@live.fr>’

The Description field contains
  <arXiv:2202.07963>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder packages required for checking but not installed:
  'knitr', 'rmarkdown'
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pinp'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'flextable', 'ftExtra', 'gt', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Simon Grund <simon.grund@uni-hamburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Grund",
                      role = c("aut", "cre"),
                      email = "simon.grund@uni-hamburg.de"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = "aut"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Package required but not available: ‘rlist’

Packages suggested but not available for checking:
  'gam', 'karyoploteR', 'knitr', 'plotly', 'regioneR', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
checkRd: (-1) PV.Rd:14: Lost braces
    14 | plausible value in turn; with code{rewrite=FALSE} a new data set is
       |                                   ^
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘fGarch’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Teimouri",
                    role = c("aut", "cre", "cph", "ctb"),
                    email = "teimouri@aut.ac.ir",
                    comment = c(ORCID = "0000-0002-5371-9364"))
as necessary.
Maintainer: ‘Georgios Papageorgiou <gpapageo@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'devtools', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘gam’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Constantin Ahlmann-Eltze <artjom31415@googlemail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter Macdonald <pdmmac@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Macdonald",
                      role = c("aut", "cre"),
                      email = "pdmmac@mcmaster.ca"),
               person(given = c("with", "contributions", "from", "Juan"),
                      family = "Du",
                      role = "aut",
                      email = "duduyy@hotmail.com"))
as necessary.
Packages required but not available: 'fMultivar', 'latentcor'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander White <whitealj@iu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/alexanderjwhite/mixedLSR
which should likely be
  https://github.com/alexanderjwhite/mixedLSR/issues
instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/mixedMem.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Michal",
                      family = "Trzesiok",
                      role = "aut"))
as necessary.
Maintainer: ‘Charlotte Dion <charlotte.dion@upmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlotte",
                      family = "Dion",
                      role = c("aut", "cre"),
                      email = "charlotte.dion@upmc.fr"),
               person(given = "Adeline",
                      family = "Sansom",
                      role = "aut"),
               person(given = "Simone",
                      family = "Hermann",
                      role = "aut"))
as necessary.
Maintainer: ‘Lorenzo Mercuri <lorenzo.mercuri@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lorenzo",
                      family = "Mercuri",
                      role = c("aut", "cre"),
                      email = "lorenzo.mercuri@unimi.it"),
               person(given = "Edit",
                      family = "Rroji",
                      role = "aut"))
as necessary.
checkRd: (-1) SLD.Rd:20: Escaped LaTeX specials: \&
Maintainer: ‘Marie-Karelle Riviere-Jourdan <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie-Karelle",
                      family = "Riviere-Jourdan",
                      role = c("aut", "cre"),
                      email = "eldamjh@gmail.com"),
               person(given = "France",
                      family = "Mentre",
                      role = "aut",
                      email = "france.mentre@inserm.fr"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘mixgb-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mixgb_cv
> ### Title: Use cross-validation to find the optimal 'nrounds'
> ### Aliases: mixgb_cv
> 
> ### ** Examples
> 
> params <- list(max_depth = 3, subsample = 0.7, nthread = 2)
> cv.results <- mixgb_cv(data = nhanes3, xgb.params = params)
Warning in throw_err_or_depr_msg("Parameter(s) have been removed from this function: ",  :
  Parameter(s) have been removed from this function: label. This warning will become an error in a future version.
Error in xgb.cv(data = obs.data, params = xgb.params, label = obs.y, objective = obj.type,  : 
  inherits(data, "xgb.DMatrix") is not TRUE
Calls: mixgb_cv -> xgb.cv -> stopifnot
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Cristina Tortora <grikris1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristina",
                      family = "Tortora",
                      role = c("aut", "cre", "cph"),
                      email = "grikris1@gmail.com"),
               person(given = "Aisha",
                      family = "ElSherbiny",
                      role = "com"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = c("aut", "cph")),
               person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cph")),
               person(given = c("and", "Paul", "D."),
                      family = "McNicholas",
                      role = c("aut", "cph")),
               person(given = c("Donald", "D."),
                      family = "Amos.",
                      role = "ctb"))
as necessary.
Package required but not available: ‘Seurat’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Bing Song <bing.song@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bing",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "bing.song@utsouthwestern.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Bug Fix
    Update Vignettes
    Function Optimizing
    New Functions
    Vignette
    Optimization
    Fix Bugs
    Add New Function
    Update Description Files
    Fix bugs
    New .R files
    Update Old .R files
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘mixOmics’

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Cassandro Davi Emer <cde@actisys.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Cassandro", "Davi"),
                    family = "Emer",
                    role = c("aut", "cre"),
                    email = "cde@actisys.org")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'devtools', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Brian C. Franczak <franczakb@macewan.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cre"),
                      email = "franczakb@macewan.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = c("aut", "cph")),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = c("aut", "cph")),
               person(given = c("Katherine", "L."),
                      family = "Burak",
                      role = "ctb"))
as necessary.
Maintainer: ‘Brian Stock <bstock09@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

The Description field contains
  <arXiv:2205.14067> and estimating parameters of the symmetric stable
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘mixtools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Derek Young <derek.young@uky.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Xiangwei Zhu <xwzhunc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiangwei",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "xwzhunc@gmail.com")
as necessary.
Package required but not available: ‘treespace’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Zihao Zheng <zihao.zheng@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihao",
                      family = "Zheng",
                      role = c("aut", "cre"),
                      email = "zihao.zheng@wisc.edu"),
               person(given = "Michael",
                      family = "A.Newton",
                      role = "aut"))
as necessary.
Packages required but not available: 'DT', 'plotly'

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘plotly’

Packages suggested but not available for checking:
  'diffviewer', 'roxygen2', 'knitr', 'rmarkdown', 'pkgdown', 'covr',
  'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Alexander Volkmann <alexander.volkmann@hu-berlin.de>’

The Description field contains
  Implementation for Volkmann, Umlauf, Greven (2023) <arXiv:2311.06409>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Package required but not available: ‘fdapace’

Package suggested but not available for checking: ‘tidyverse’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Yalin Wang <wangyalin@mail.sdu.edu.cn>’

The Description field contains
  (2022) <arXiv:2207.09633>. In this package, we provide the algorithms
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Maintainer: ‘Thomas Jaki <thomas.jaki@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Jaki",
                    role = c("aut", "cre"),
                    email = "thomas.jaki@protonmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > suppressPackageStartupMessages({
  +   library(testthat)
  +   library(data.table)
  + })
  > 
  > test_check("mknapsack")
  Loading required package: mknapsack
  Saving _problems/test-packing-153.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 21 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-packing.R:146:5'): solver / calls correct method based on the option value ──
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
  ℹ Please use `with_mocked_bindings()` instead.
  Backtrace:
      ▆
   1. └─testthat::with_mock(...) at test-packing.R:146:5
   2.   └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
   3.     └─lifecycle:::deprecate_stop0(msg)
   4.       └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 21 ]
  Error:
  ! Test failures.
  Execution halted
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("B", "N"),
                    family = "Mandal",
                    role = c("aut", "cre"),
                    email = "mandal.stat@gmail.com")
as necessary.
Packages required but not available: 'keras', 'tensorflow', 'tfprobability'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dmitriy Selivanov <selivanov.dmitriy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dmitriy",
                    family = "Selivanov",
                    role = c("aut", "cre"),
                    email = "selivanov.dmitriy@gmail.com")
as necessary.
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘gt’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Philip D. Waggoner <philip.waggoner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "philip.waggoner@gmail.com")
as necessary.
checkRd: (-1) Texture.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:33: Escaped LaTeX specials: \&
Package required but not available: ‘OddsPlotty’

Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘David Charte <fdavidcl@ugr.es>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/mldr.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Kenneth Knoblauch <ken.knoblauch@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Knoblauch",
                      role = c("aut", "cre"),
                      email = "ken.knoblauch@inserm.fr"),
               person(given = c("Laurence", "T."),
                      family = "Maloney",
                      role = "aut"),
               person(given = c("based", "in", "part", "on", "C", "code", "written", "by", "Laurence", "T."),
                      family = "Maloney",
                      role = "aut"),
               person(given = c("J.", "N."),
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Garrett M. Dancik <dancikg@easternct.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Garrett", "M."),
                    family = "Dancik",
                    role = c("aut", "cre"),
                    email = "dancikg@easternct.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) gp.list.Rd:16: Escaped LaTeX specials: \#
Packages required but not available: 'Compositional', 'Directional'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘ergm’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Josmar Mazucheli <jmazucheli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josmar",
                    family = "Mazucheli",
                    role = c("aut", "cre"),
                    email = "jmazucheli@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Christopher R John <chris.r.john86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Christopher", "R"),
                    family = "John",
                    role = c("aut", "cre"),
                    email = "chris.r.john86@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘kdry’

Packages suggested but not available for checking: 'lintr', 'quarto'

VignetteBuilder package required for checking but not installed: ‘quarto’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘yaml’

Packages suggested but not available for checking:
  'covr', 'keras', 'lintr', 'sparklyr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nicola Sartori <nicola.sartori@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Sartori",
                      role = c("aut", "cre"),
                      email = "nicola.sartori@unipd.it"),
               person(given = "Alessandra",
                      family = "Salvan",
                      role = "aut"),
               person(given = "Luigi",
                      family = "Pace",
                      role = "aut"))
as necessary.
Package required but not available: ‘FactoMineR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Richard Harris <rich.harris@bris.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Richard",
                      family = "Harris",
                      role = c("aut", "cre"),
                      email = "rich.harris@bris.ac.uk"),
               person(given = "Dewi",
                      family = "Owen",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘aggdata.Rd’:
    http://dx.doi.org/10.5257/census/aggregate-2011-1
  File ‘ethnicities.Rd’:
    http://dx.doi.org/10.5257/census/aggregate-2011-1
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
checkRd: (-1) mlim.Rd:58: Lost braces
    58 |              Note that code{"XGB"} is only available in Mac OS and Linux. moreover,
       |                            ^
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'Seurat'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'kdry', 'mlexperiments'

Packages suggested but not available for checking: 'lintr', 'quarto'

VignetteBuilder package required for checking but not installed: ‘quarto’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Qingzhao Yu <qyu@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingzhao",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "qyu@lsuhsc.edu"),
               person(given = "Bin",
                      family = "Li",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Samara Kiihl <samara@ime.unicamp.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Samara",
                      family = "Kiihl",
                      role = c("aut", "cre"),
                      email = "samara@ime.unicamp.br"),
               person(given = c("Maria", "Jose"),
                      family = "Martinez-Garrido",
                      role = "aut"),
               person(given = "Arce",
                      family = "Domingo-Relloso",
                      role = "aut"),
               person(given = "Jose",
                      family = "Bermudez",
                      role = "aut"),
               person(given = "Maria",
                      family = "Tellez-Plaza",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'minfi', 'knitr', 'rmarkdown', 'IlluminaHumanMethylation450kmanifest'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Clement Mabire <clement.mabire@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fanny",
                      family = "Bonnafous",
                      role = "aut"),
               person(given = "Alexandra",
                      family = "Duhnen",
                      role = "aut"),
               person(given = "Louise",
                      family = "Gody",
                      role = "aut"),
               person(given = "Olivier",
                      family = "Guillaume",
                      role = c("aut", "cre")),
               person(given = "Brigitte",
                      family = "Mangin",
                      role = "aut"),
               person(given = "Prune",
                      family = "Pegot-Espagnet",
                      role = "aut"),
               person(given = "Vincent",
                      family = "Segura",
                      role = "aut"),
               person(given = c("Bjarni", "J."),
                      family = "Vilhjalmsson",
                      role = "aut"),
               person(given = "Clement",
                      family = "Mabire",
                      role = c("aut", "cre"),
                      email = "clement.mabire@inra.fr"),
               person(given = "Timothee",
                      family = "Flutre",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mlmm.gwas.Rd’:
    https://doi.org/10.1007/s00122-017-3003-4
    https://doi.org/10.1038/ng.2314
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kuo-Jung Lee <kuojunglee@mail.ncku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kuo-Jung",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "kuojunglee@mail.ncku.edu.tw")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'plotly', 'reactable'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Steve Walker <steve.walker@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Douglas",
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut",
                      email = "maechler@R-project.org"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut",
                      email = "bolker@mcmaster.ca"),
               person(given = "Steve",
                      family = "Walker",
                      role = "cre",
                      email = "steve.walker@utoronto.ca"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'TSclust', 'MTS', 'fda.usc', 'TSdist'

Packages suggested but not available for checking:
  'ueadata1', 'ueadata2', 'ueadata3', 'ueadata4', 'ueadata5',
  'ueadata6', 'ueadata7', 'ueadata8'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jan Graffelman <jan.graffelman@upc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mikhail Popov <mikhail@mpopov.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Cannot process vignettes
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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DESCRIPTION file?
Package required but not available: ‘rlist’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
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  'pagedown', 'kableExtra', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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DESCRIPTION file?
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  'knitr', 'quanteda', 'rmarkdown', 'visNetwork', 'htmlwidgets'

VignetteBuilder packages required for checking but not installed:
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Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'animint2', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

Packages suggested but not available for checking: 'shinytest', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
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  'knitr', 'plotly', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
'library' or 'require' calls not declared from:
  ‘future’ ‘mlr3tuning’
Cannot process vignettes
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  'knitr', 'mlflow', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
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DESCRIPTION file?
Cannot process vignettes
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  'knitr', 'rmarkdown', 'randomForestSRC', 'FSelector', 'lintr',
  'Hmisc'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
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  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) MBOMultiObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:11-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:9-11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:13-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:18-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setMBOControlMultiObj.Rd:119-120: Lost braces
   119 | Notes in Computer Science, ISBN 978-3-642-37139-4, pp. 756{770,
       |                                                           ^
checkRd: (-1) trafos.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) trafos.Rd:29: Lost braces in \itemize; meant \describe ?
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'adabag', 'fda.usc', 'FSelector', 'Hmisc', 'knitr', 'lintr', 'pec',
  'rmarkdown', 'RWeka', 'survAUC'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
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  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘tmap’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'fabR', 'madshapR'

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'kdry', 'mlexperiments', 'mllrnrs'

Packages suggested but not available for checking: 'lintr', 'quarto'

VignetteBuilder package required for checking but not installed: ‘quarto’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking: 'knitr', 'rms'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/mlt.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ben Gorman <bgorman@GormAnalysis.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Gorman",
                    role = c("aut", "cre"),
                    email = "bgorman@gormanalysis.com")
as necessary.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'qgraph', 'graphicalVAR'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DiagrammeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) simpopmlx.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{fim}{the Fisher Information Matrix estimated by Monolix. fim={"sa", "lin"} (default="sa")}
       |                                                                    ^
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Deena", "M.A."),
                      family = "Gendoo",
                      role = "aut",
                      email = "deena.gendoo@utoronto.ca"),
               person(given = "Benjamin",
                      family = "Haibe-Kains",
                      role = c("aut", "cre"),
                      email = "benjamin.haibe.kains@utoronto.ca"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/MM2Sdata.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Qingzhao Yu <qyu@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingzhao",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "qyu@lsuhsc.edu"),
               person(given = "Bin",
                      family = "Li",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Maintainer: ‘Jeffrey A. Ryan <jeff.a.ryan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "A."),
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "jeff.a.ryan@gmail.com")
as necessary.
File ‘mmap/libs/mmap.so’:
  Found non-API calls to R: ‘Rf_allocSExp’, ‘SET_ENCLOS’, ‘SET_FRAME’,
    ‘SET_HASHTAB’
These entry points may be removed soon:
‘SET_FRAME’, ‘SET_HASHTAB’, ‘SET_ENCLOS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Packages required but not available: 'DT', 'leaflet', 'plotly'

Packages suggested but not available for checking:
  'devtools', 'usethis', 'shinytest'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'xlsx', 'cosinor2', 'accelerometry', 'ActCR', 'ActFrag',
  'kableExtra', 'GGIR'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sebastian Hönel <sebastian.honel@lnu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Hönel",
                    role = c("aut", "cre"),
                    email = "sebastian.honel@lnu.se")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Kengo Nagashima <nshi1201@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mmcm-package.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
  File ‘mmcm.mvt.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
  File ‘mmcm.resamp.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jaejoon",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "jjsong2@mdanderson.org")
as necessary.
Packages required but not available: 'knitr', 'rlist'

Packages suggested but not available for checking:
  'rmarkdown', 'kableExtra', 'tidyverse'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Chaojie Wang <wang910930@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chaojie",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wang910930@163.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
    62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
       |                                                                               ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Charles-Edouard Giguere <ce.giguere@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles-Edouard",
                    family = "Giguere",
                    role = c("aut", "cre"),
                    email = "ce.giguere@gmail.com")
as necessary.
checkRd: (-1) mmeln.Rd:69: Lost braces; missing escapes or markup?
    69 |   \item{obj$M}{Number of total observations sum_{i=1}^N(pi)}
       |                                                 ^
Maintainer: ‘E. Lopez-Vizcaino <esther.lopez@ige.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "E.",
                      family = "Lopez-Vizcaino",
                      role = c("aut", "cre"),
                      email = "esther.lopez@ige.eu"),
               person(given = "M.J.",
                      family = "Lombardia",
                      role = "aut"),
               person(given = "D.",
                      family = "Morales",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'rmarkdown', 'knitr', 'prettydoc'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Nadezda Spiridovska <Spiridovska.N@tsi.lv>’

The Description field contains
  <arXiv:1901.09600v1> and algorithm of parameters estimation is based on
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotly'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘David M Schruth <dschruth@anthropoidea.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "M"),
                    family = "Schruth",
                    role = c("aut", "cre"),
                    email = "dschruth@anthropoidea.org")
as necessary.
checkRd: (-1) average.fit.models.Rd:6: Lost braces; missing escapes or markup?
     6 | These function takes the output of pgls.iter and uses its list of objects { model fits, optimzations (e.g.AICc)} and performs a weighted average on the ctoefficients estimated in the former by weighting by the latter. The parameters can also optionally be converted to binary by specifying "binary=FALSE" or just running the alias wraper function for assessing evidence of variable importance (Burnham & Anderson 2000).
       |                                                                           ^
Maintainer: ‘David Winter <david.winter@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘"Tao Liu, PhD" <tliu@stat.brown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Tao",
                      family = "Liu"),
               person(given = c("PhD\"", "\"Yizhen"),
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "tliu@stat.brown.edu"),
               person(family = "ScM\"",
                      role = "aut",
                      email = "yizhen_xu@brown.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Felix Held <felix.held@gmail.com>’

The Description field contains
  <arXiv:1911.04927>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++14: support will be removed soon
Maintainer: ‘Hideitsu Hino <hinohide@cs.tsukuba.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hideitsu",
                      family = "Hino",
                      role = c("aut", "cre"),
                      email = "hinohide@cs.tsukuba.ac.jp"),
               person(given = "Ken",
                      family = "Takano",
                      role = "aut"),
               person(given = "Yuki",
                      family = "Yoshikawa",
                      role = "aut"),
               person(given = "Noboru",
                      family = "Murata",
                      role = "aut"))
as necessary.
checkRd: (-1) k2d.Rd:26: Lost braces
    26 | d_ND(x,y) = sqrt{ k(x,x) - 2k(x,y) + k(y,y)}.
       |                 ^
checkRd: (-1) k2d.Rd:34: Lost braces
    34 | d_n(x,y) = 1 - k(x,y)/sqrt{ k(x,x)k(y,y)},
       |                           ^
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robin", "K.", "S."),
                      family = "Hankin",
                      role = c("aut", "cre"),
                      email = "hankin.robin@gmail.com"),
               person(given = c("P.", "M.", "E."),
                      family = "Altham",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Steve Condylios <steve.condylios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steve",
                    family = "Condylios",
                    role = c("aut", "cre", "cph"),
                    email = "steve.condylios@gmail.com",
                    comment = c(ORCID = "0000-0003-0599-844X"))
as necessary.
Maintainer: ‘Eoin O'Connell <eoin.m.oconnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eoin",
                    family = "O'Connell",
                    role = c("aut", "cre"),
                    email = "eoin.m.oconnell@gmail.com")
as necessary.
Package required but not available: ‘knitr’

Package suggested but not available for checking: ‘rmarkdown’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Benjamin J. Radford <benjamin.radford@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Benjamin", "J."),
                    family = "Radford",
                    role = c("aut", "cre"),
                    email = "benjamin.radford@gmail.com")
as necessary.
Maintainer: ‘Jarad Niemi <niemi@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jarad",
                    family = "Niemi",
                    role = c("aut", "cre"),
                    email = "niemi@iastate.edu")
as necessary.
Maintainer: ‘Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>’

The Description field contains
  (2020) <arXiv:2009.07662>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Packages required but not available: 'keras', 'tensorflow', 'usethis'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘mlVAR’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de",
                    comment = c(ORCID = "0000-0002-8226-3132"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Package required but not available: ‘rmarkdown’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wen Qu <wqu@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wen",
                      family = "Qu",
                      role = c("aut", "cre"),
                      email = "wqu@nd.edu"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Adelchi Azzalini <adelchi.azzalini@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adelchi",
                      family = "Azzalini",
                      role = c("aut", "cre"),
                      email = "adelchi.azzalini@unipd.it"),
               person(given = "Alan",
                      family = "Genz",
                      role = "aut",
                      comment = "most Fortran code"),
               person(given = "Alan",
                      family = "Miller",
                      role = "ctb",
                      comment = "Fortran routine PHI"),
               person(given = c("Michael", "J."),
                      family = "Wichura",
                      role = "ctb",
                      comment = "Fortran routine PHINV"),
               person(given = c("G.", "W."),
                      family = "Hill",
                      role = "ctb",
                      comment = "Fortran routine STDINV"),
               person(given = "Yihong",
                      family = "Ge.",
                      role = "ctb",
                      comment = "Fortran routines BNVU and MVBVU"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) mom.mtruncnorm.Rd:35: Lost braces
    35 |   \item{cum}{a logical value; if  code{TRUE}  (default value), cumulants 
       |                                       ^
checkRd: (-1) mom.mtruncnorm.Rd:43: Lost braces; missing escapes or markup?
    43 | The maximal value of {d} is \code{20}. If this threshold is exceeded, \code{NA}s
       |                      ^
checkRd: (-1) mt.Rd:110: Lost braces
   110 |   and code{tvpack}, downloaded in 2005 and again in 2007 from his webpage, 
       |           ^
Maintainer: ‘Ricardo Pio Monti <ricardo.monti08@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ricardo", "Pio"),
                      family = "Monti",
                      role = c("aut", "cre"),
                      email = "ricardo.monti08@gmail.com"),
               person(given = "Christoforos",
                      family = "Anagnostopoulos",
                      role = "aut"),
               person(given = "Giovanni",
                      family = "Montana",
                      role = "aut"))
as necessary.
Maintainer: ‘Bruno Ebner <bruno.ebner@kit.edu>’

The Description field contains
  (2020) <arXiv:2004.07332> titled "Tests for multivariate normality -- a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BHEP.Rd’:
    https://doi.org/10.1006/jmva.1997.1684
    https://doi.org/10.1093/biomet/70.3.723
  File ‘HJG.Rd’:
    https://doi.org/10.1007/s11749-018-0589-z
  File ‘HJM.Rd’:
    https://doi.org/10.1017/S0266466618000154
  File ‘HV.Rd’:
    https://doi.org/10.1007/s10463-019-00720-8
  File ‘HZ.Rd’:
    https://doi.org/10.1080/03610929008830400
  File ‘MQ1.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘MQ2.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘SR.Rd’:
    https://doi.org/10.1016/j.jmva.2003.12.002
  File ‘test.BHEP.Rd’:
    https://doi.org/10.1006/jmva.1997.1684
  File ‘test.HJG.Rd’:
    https://doi.org/10.1007/s11749-018-0589-z
  File ‘test.HJM.Rd’:
    https://doi.org/10.1017/S0266466618000154
  File ‘test.HV.Rd’:
    https://doi.org/10.1007/s10463-019-00720-8
  File ‘test.HZ.Rd’:
    https://doi.org/10.1080/03610929008830400
  File ‘test.MQ1.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘test.MQ2.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘test.SR.Rd’:
    https://doi.org/10.1016/j.jmva.2003.12.002
Maintainer: ‘Brett Mullins <brettcmullins@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brett",
                      family = "Mullins",
                      role = c("aut", "cre"),
                      email = "brettcmullins@gmail.com"),
               person(given = "Trevor",
                      family = "Harkreader",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Problems with news in ‘NEWS.md’:
No news entries found.
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johann",
                      family = "Kraus",
                      role = "aut",
                      email = "johann.kraus@uni-ulm.de"),
               person(given = "Hans",
                      family = "Kestler",
                      role = "cre",
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown', 'usethis'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Rishabh Gupta <rishabh.uk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rishabh",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "rishabh.uk@gmail.com"),
               person(given = c("Nicholas", "J."),
                      family = "Matzke",
                      role = "aut"),
               person(given = c("Dept.", "of", "Integrative"),
                      family = "Biology",
                      role = "aut"),
               person(given = "U.C.",
                      family = "Berkeley",
                      role = "aut"))
as necessary.
Maintainer: ‘Surajit Ray <surajit.ray@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Surajit",
                      family = "Ray",
                      role = c("aut", "cre"),
                      email = "surajit.ray@glasgow.ac.uk"),
               person(given = "Yansong",
                      family = "Cheng",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘choose.cluster.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘contourHMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘hard.HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘pHMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘plot.hmac.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘soft.HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘summary.hmac.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
Package required but not available: ‘fBasics’

Package suggested but not available for checking: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘test-pmodel-test.R’ [13s/13s]
  Running ‘test-pmodel.R’ [21s/22s]
  Comparing ‘test-pmodel.Rout’ to ‘test-pmodel.Rout.save’ ... OK
  Running ‘test-pmtree.R’ [11s/13s]
  Comparing ‘test-pmtree.Rout’ to ‘test-pmtree.Rout.save’ ...13,18d12
< Warning message:
< `aes_string()` was deprecated in ggplot2 3.0.0.
< ℹ Please use tidy evaluation idioms with `aes()`.
< ℹ See also `vignette("ggplot2-in-packages")` for more information.
< ℹ The deprecated feature was likely used in the model4you package.
<   Please report the issue to the authors.
Cannot process vignettes
Packages suggested but not available for checking:
  'discovr', 'knitr', 'rmarkdown', 'rstanarm'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘plotly’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘pins’

Package suggested but not available for checking: ‘covr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tidypredict’

Packages suggested but not available for checking:
  'covr', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DT', 'kableExtra', 'devtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Peer Christensen <hr.pchristensen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peer",
                    family = "Christensen",
                    role = c("aut", "cre"),
                    email = "hr.pchristensen@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Xinyong Tian <xinyongtian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xinyong",
                    family = "Tian",
                    role = c("aut", "cre"),
                    email = "xinyongtian@gmail.com")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘r2d3’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'spelling'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘tables’

Packages suggested but not available for checking:
  'altdoc', 'bookdown', 'covr', 'DT', 'flextable', 'gt', 'gtExtras',
  'kableExtra', 'knitr', 'rmarkdown', 'rstanarm', 'spelling',
  'tidyverse'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'modeltime', 'modeltime.resample', 'timetk'

Packages suggested but not available for checking:
  'gt', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available:
  'timetk', 'plotly', 'reactable', 'gt', 'prophet'

Packages suggested but not available for checking:
  'sparklyr', 'trelliscopejs', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'modeltime', 'timetk', 'plotly'

Packages suggested but not available for checking:
  'tidyquant', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘knitr’

Packages suggested but not available for checking:
  'covr', 'rmarkdown', 'openintro'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "Alberto", "Cardozo"),
                    family = "Delgado",
                    role = c("aut", "cre"),
                    email = "cardozorpackages@gmail.com")
as necessary.
Maintainer: ‘Philip Pallmann <pallmannp@cardiff.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Packages required but not available: 'knitr', 'rhandsontable'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yadu Balehosur <yadu@vizualytics.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yadu",
                    family = "Balehosur",
                    role = c("aut", "cre"),
                    email = "yadu@vizualytics.com")
as necessary.
Package required but not available: ‘DT’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Maria Schelling <schelling.rmaintainer@vodafone.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Schelling",
                      role = c("aut", "cre"),
                      email = "schelling.rmaintainer@vodafone.de"),
               person(given = "Cang",
                      family = "Hui",
                      role = "aut"))
as necessary.
Package required but not available: ‘qgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(mod)
  
  Attaching package: 'mod'
  
  The following objects are masked from 'package:base':
  
      drop, use
  
  > 
  > test_check("mod")
  Saving _problems/test-declaratives-26.R
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 25 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • {covr} is not installed. (1): 'test-utils.R:2:9'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-declaratives.R:23:1'): (code run outside of `test_that()`) ─────
  Error in `require(covr)`: covr is not an installed package
  Backtrace:
      ▆
   1. └─mod::ule(...) at test-declaratives.R:23:1
   2.   └─mod::acquire(temp_file, parent = parent, lock = lock, expose_private = expose_private)
   3.     └─base::sys.source(file = module, envir = private)
   4.       └─base::eval(exprs[i], envir)
   5.         └─base::eval(exprs[i], envir)
   6.           └─mod:::require(covr)
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 25 ]
  Error:
  ! Test failures.
  Execution halted
Package required but not available: ‘plotly’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Yongbo Gan <yongbogan@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yongbo",
                      family = "Gan",
                      role = c("aut", "cre"),
                      email = "yongbogan@whu.edu.cn"),
               person(given = "Zhijian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Wei",
                      family = "Mei",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "Peter.Langfelder@gmail.com"),
               person(given = "Steve",
                      family = "Horvath",
                      role = "aut",
                      email = "SHorvath@mednet.ucla.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking:
  'devtools', 'knitr', 'lintr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'pkgdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Bo Wei <ckris@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Wei",
                    role = c("aut", "cre"),
                    email = "ckris@163.com")
as necessary.
Package required but not available: ‘compareDF’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'rgl'

VignetteBuilder package required for checking but not installed: ‘knitr’
Running examples in ‘molaR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Hills
> ### Title: Hills surface mesh
> ### Aliases: Hills Hills.mesh
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Hills)
> DNE_Output <- DNE(Hills)
Total Surface DNE = 136.5057 
Convex DNE= 53.50109 
Concave DNE= 83.00464 
> DNE3d(DNE_Output)
Error in loadNamespace(x) : there is no package called ‘rgl’
Calls: DNE3d ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Sander Lestrade <samlestrade@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sander",
                    family = "Lestrade",
                    role = c("aut", "cre"),
                    email = "samlestrade@protonmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) CHECKSUCCESS.Rd:44: Escaped LaTeX specials: \&
Package required but not available: ‘rlist’

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Ruizhe Hou <houruizhe1210@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruizhe",
                      family = "Hou",
                      role = c("aut", "cre"),
                      email = "houruizhe1210@gmail.com"),
               person(given = "Lu",
                      family = "Lu",
                      role = "aut"))
as necessary.
Maintainer: ‘David Rossell <rosselldavid@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Rossell",
                      role = c("aut", "cre"),
                      email = "rosselldavid@gmail.com"),
               person(given = c("John", "D."),
                      family = "Cook",
                      role = "aut"),
               person(given = "Donatello",
                      family = "Telesca",
                      role = "aut"),
               person(given = "P.",
                      family = "Roebuck",
                      role = "aut"),
               person(given = "Oriol",
                      family = "Abril",
                      role = "aut"),
               person(given = "Miquel",
                      family = "Torrens",
                      role = "aut"))
as necessary.
Maintainer: ‘Dean Bodenham <deanbodenhambsse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dean",
                    family = "Bodenham",
                    role = c("aut", "cre"),
                    email = "deanbodenhambsse@gmail.com")
as necessary.
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/gelS4.Rnw’
   ‘inst/doc/gmmS4.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lukasz",
                      family = "Komsta",
                      role = c("aut", "cre"),
                      email = "lukasz.komsta@umlub.pl"),
               person(given = "Frederick",
                      family = "Novomestky",
                      role = "aut",
                      email = "fnovomes@poly.edu"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘htmlwidgets’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Dan Murphy <chiefmurphy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Murphy",
                    role = c("aut", "cre"),
                    email = "chiefmurphy@gmail.com")
as necessary.
Running ‘spelling.R’ [0s/0s]
Running the tests in ‘tests/spelling.R’ failed.
Complete output:
  > spelling::spell_check_test(vignettes = TRUE, error = FALSE)
  Error in loadNamespace(x) : there is no package called 'spelling'
  Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted
Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

Files named as vignettes but with no recognized vignette engine:
   ‘inst/doc/monitoR_QuickStart.Rnw’
(Is a VignetteBuilder field missing?)

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘Hmisc’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'DT', 'monobin'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) circ_dist.Rd:21: Lost braces; missing escapes or markup?
    21 | The distance between two observations {i} and {j} of a circular variable {q}
       |                                       ^
checkRd: (-1) circ_dist.Rd:21: Lost braces; missing escapes or markup?
    21 | The distance between two observations {i} and {j} of a circular variable {q}
       |                                               ^
checkRd: (-1) circ_dist.Rd:21: Lost braces; missing escapes or markup?
    21 | The distance between two observations {i} and {j} of a circular variable {q}
       |                                                                          ^
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Marcelo Reginato <reginatobio@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Reginato",
                    role = c("aut", "cre"),
                    email = "reginatobio@yahoo.com.br")
as necessary.
Package required but not available: ‘rmarkdown’

Package suggested but not available for checking: ‘knitr’

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'taxize'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Berwin A. Turlach <Berwin.Turlach@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Olli Saarela <olli.saarela@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olli",
                      family = "Saarela",
                      role = c("aut", "cre"),
                      email = "olli.saarela@utoronto.ca"),
               person(given = "Christian",
                      family = "Rohrbeck",
                      role = "aut"))
as necessary.
Maintainer: ‘Frank Busing <busing@fsw.leidenuniv.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) legacy.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:40: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Scott Kostyshak <scott.kostyshak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("This", "version", "Kay"),
                      family = "Pilz",
                      role = "aut"),
               person(given = c("Steffanie", "Titoff.", "Earlier", "developements", "by", "Holger"),
                      family = "Dette",
                      role = "aut"),
               person(given = "Kay",
                      family = "Pilz.",
                      role = "aut"),
               person(given = "Scott",
                      family = "Kostyshak",
                      role = "cre",
                      email = "scott.kostyshak@gmail.com"))
as necessary.
Maintainer: ‘Christian Hendrik Leschinski <christian_leschinski@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Christian", "Hendrik"),
                    family = "Leschinski",
                    role = c("aut", "cre"),
                    email = "christian_leschinski@gmx.de")
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Dennis Boos <boos@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dennis",
                      family = "Boos",
                      role = c("aut", "cre"),
                      email = "boos@ncsu.edu"),
               person(given = "Kevin",
                      family = "Matthew",
                      role = "aut"),
               person(given = "Jason",
                      family = "Osborne",
                      role = "aut"))
as necessary.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'blastula', 'xlsx'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'rmarkdown', 'knitr'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'config', 'usethis'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Keon-Woong Moon <cardiomoon@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'ztable', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Martin Bialke <mosaic-projekt@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Bialke",
                      role = c("aut", "cre"),
                      email = "mosaic-projekt@uni-greifswald.de"),
               person(given = "Thea",
                      family = "Schwaneberg",
                      role = "aut",
                      email = "thea.schwaneberg@uni-greifswald.de"),
               person(given = "Rene",
                      family = "Walk",
                      role = "aut",
                      email = "rene.walk@uni-greifswald.de"))
as necessary.
Packages required but not available: 'DT', 'datamods'

Packages suggested but not available for checking: 'rmdformats', 'GDAtools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stopwords.R’
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
checkRd: (-1) morphemepiece_cache_dir.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) morphemepiece_cache_dir.Rd:20-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) morphemepiece_cache_dir.Rd:22-24: Lost braces in \itemize; meant \describe ?
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'Arothron', 'Morpho', 'rgl'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

Package suggested but not available for checking: ‘shapes’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Packages required but not available: 'candisc', 'heplots'

Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘rgl’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Package required but not available: ‘crch’

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'covr'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'tidyverse', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Cannot process vignettes
Packages suggested but not available for checking:
  'knitr', 'plotly', 'rmarkdown'

VignetteBuilder package required for checking but not installed: ‘knitr’
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Maintainer: ‘Daniel Kaplan <kaplan@macalester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "T."),
                      family = "Kaplan",
                      role = "aut",
                      email = "kaplan@macalester.edu"),
               person(given = "Randall",
                      family = "Pruim",
                      role = "aut",
                      email = "rpruim@calvin.edu"),
               person(given = c("Nicholas", "J."),
                      family = "Horton",
                      role = "aut",
                      email = "nhorton@amherst.edu"),
               person(given = "Daniel",
                      family = "Kaplan",
                      role = "cre",
                      email = "kaplan@macalester.edu"))
as necessary.
Packages required but not available: 'ggformula', 'mosaic'

Packages suggested but not available for checking:
  'knitr', 'rmarkdown', 'plotly'

VignetteBuilder package required for checking but not installed: ‘knitr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Running examples in ‘mosaicCore-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: inspect
> ### Title: Inspect objects
> ### Aliases: inspect inspect.list inspect.character inspect.logical
> ###   inspect.numeric inspect.factor inspect.Date inspect.POSIXt
> ###   inspect.data.frame print.inspected_data_frame
> 
> ### ** Examples
> 
> if (require(mosaicData)) {
+   inspect(Births78)
+   inspect(Births78, is.numeric)
+ }
Loading required package: mosaicData
Error in loadNamespace(x) : there is no package called ‘mosaic’
Calls: inspect ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(mosaicCore)
  
  Attaching package: 'mosaicCore'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  > 
  > test_check("mosaicCore")
  Failed with error:  'there is no package called 'mosaic''
  Saving _problems/test-interval-calculations-27.R
  Failed with error:  'there is no package called 'mosaic''
  Saving _problems/test-interval-calculations-35.R
  [ FAIL 2 | WARN 1 | SKIP 2 | PASS 128 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • empty test (2): 'test-interval-calculations.R:39:1',
    'test-makeFun-formula.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-interval-calculations.R:26:3'): CI for sample proportions work. ──
  Expected `t2[c("six_lower", "six_upper")]` to be equivalent to `as.numeric(ref$conf.int)`.
  Component 1: Mean relative difference: 0.01043699
  Component 2: Mean relative difference: 0.06594204
  ── Failure ('test-interval-calculations.R:34:3'): CI for sample proportions work with long_names. ──
  Expected `t2[c("six_lower", "six_upper")]` to be equivalent to `as.numeric(ref$conf.int)`.
  Component 1: Mean relative difference: 0.01043699
  Component 2: Mean relative difference: 0.06594204
  
  [ FAIL 2 | WARN 1 | SKIP 2 | PASS 128 ]
  Error:
  ! Test failures.
  Execution halted
Maintainer: ‘Randall Pruim <rpruim@calvin.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Randall",
                      family = "Pruim",
                      role = c("aut", "cre"),
                      email = "rpruim@calvin.edu"),
               person(given = "Daniel",
                      family = "Kaplan",
                      role = "aut",
                      email = "kaplan@macalester.edu"),
               person(given = "Nicholas",
                      family = "Horton",
                      role = "aut",
                      email = "nhorton@amherst.edu"))
as necessary.