Running ‘spelling.R’
  Running ‘testthat.R’ [28s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(SIAtools)
  > 
  > test_check("SIAtools")
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed31385b0b9b'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed31c5516f2'...
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed316beb02bb'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3131336ccc'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3131336ccc'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed317f691b03'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed317765fbed'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed311778844a'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed31566cd961'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3157255d70'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3157255d70'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed316f662ae0'...
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed316f662ae0'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed313d5e8a5d'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed313d5e8a5d'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed317cdd717f'...
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > Edit the title of your module in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed317cdd717f'...
  ! This package doesn't declare that it contains any SIA modules (there is no line reading Config/ShinyItemAnalysis/module: true in the 'DESCRIPTION').
  i Trying to obtain and read SIA Modules Manifest nevertheless...
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3127dec7f9'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3171909968'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test1.R' file with your new module has been created. You can write your code here.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test2.R' file with your new module has been created. You can write your code here.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed31305c7e94'...
  ! This package doesn't declare that it contains any SIA modules (there is no line reading Config/ShinyItemAnalysis/module: true in the 'DESCRIPTION').
  i Trying to obtain and read SIA Modules Manifest nevertheless...
  ! This package doesn't declare that it contains any SIA modules (there is no line reading Config/ShinyItemAnalysis/module: true in the 'DESCRIPTION').
  i Trying to obtain and read SIA Modules Manifest nevertheless...
  ! This package doesn't declare that it contains any SIA modules (there is no line reading Config/ShinyItemAnalysis/module: true in the 'DESCRIPTION').
  i Trying to obtain and read SIA Modules Manifest nevertheless...
  x The SIA Modules Manifest file at 'inst/sia/modules.yml' is corrupt (not a list).
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3112460e21'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  # A tibble: 1 x 5
    module_id title                             category binding_ui binding_server
    <chr>     <chr>                             <chr>    <chr>      <chr>         
  1 sm_test   CHANGE THIS TO YOUR MODULE'S TIT~ Scores ~ sm_test_ui sm_test_server
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed31576140ee'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed311ffb4fa1'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed311ffb4fa1'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3164973ea5'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3164973ea5'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed314f9d3d22'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed314f9d3d22'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3176ec3d2a'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3176ec3d2a'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed312d391f72'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed312d391f72'...
  i Setting working directory to '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3175eb6ce8'...
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed3175eb6ce8'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  Writing 'NAMESPACE'
  i Loading file13ed316dfa0c4a
  x sm_test.R:25: @description Could not resolve link to topic "sm_test" in the dependencies or base packages.
  i If you haven't documented "sm_test" yet, or just changed its name, this is normal. Once "sm_test" is documented, this warning goes away.
  i Make sure that the name of the topic is spelled correctly.
  i Always list the linked package as a dependency.
  i Alternatively, you can fully qualify the link with a package name.
  Writing 'sm_test.Rd'
  Writing 'sm_test_internal.Rd'
  i Loading file13ed316dfa0c4a
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed316dfa0c4a'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  Writing 'NAMESPACE'
  i Loading file13ed313d023b2d
  x sm_test.R:25: @description Could not resolve link to topic "sm_test" in the dependencies or base packages.
  i If you haven't documented "sm_test" yet, or just changed its name, this is normal. Once "sm_test" is documented, this warning goes away.
  i Make sure that the name of the topic is spelled correctly.
  i Always list the linked package as a dependency.
  i Alternatively, you can fully qualify the link with a package name.
  Writing 'sm_test.Rd'
  Writing 'sm_test_internal.Rd'
  i Loading file13ed313d023b2d
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed313d023b2d'...
  i Adding Config/ShinyItemAnalysis/module: true to 'DESCRIPTION'.
  x There is no SIA Modules Manifest file at 'inst/sia/modules.yml'
  i Creating a new one.
  > 'inst/sia/modules.yml' YAML file with the SIA Modules Manifest has been created. Please inspect and edit.
  > 'R/sm_test.R' file with your new module has been created. You can write your code here.
  > Edit the title of your module in the YAML.
  > Chose a category from the options listed in the YAML.
  v Restoring original working directory to '/data/gannet/ripley/R/packages/tests-clang/SIAtools.Rcheck/tests/testthat'...
  v Setting active project to "<no active project>".
  v Deleting temporary project at '/tmp/Rtmp11KFZg/working_dir/RtmpRqSduU/file13ed318cd1328'...
  [ FAIL 1 | WARN 0 | SKIP 4 | PASS 65 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • On CRAN (4): 'test-add_module.R:33:1', 'test-add_module.R:66:1',
    'test-add_module.R:73:1', 'test-add_module.R:92:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-get_modules.R:76:3'): manifest prints out correctly ────────────
  Error in `parse(text = x)`: <text>:5:19: unexpected symbol
  4:   sm_test:
  5:     title: CHANGE THIS
                       ^
  Backtrace:
      ▆
   1. ├─get_modules() %>% print(as_tibble = TRUE) %>% ... at test-get_modules.R:76:3
   2. └─testthat::expect_snapshot_value(., style = "deparse", cran = TRUE)
   3.   └─testthat:::expect_snapshot_helper(...)
   4.     └─snapshotter$take_snapshot(...)
   5.       └─testthat (local) load(old_raw)
   6.         └─testthat:::reparse(x)
   7.           ├─base::eval(parse(text = x), env)
   8.           └─base::parse(text = x)
  
  [ FAIL 1 | WARN 0 | SKIP 4 | PASS 65 ]
  Error:
  ! Test failures.
  Execution halted