Error(s) in re-building vignettes:
--- re-building 'myTAI.Rmd' using rmarkdown
--- finished re-building 'myTAI.Rmd'

--- re-building 'other-strata.Rmd' using rmarkdown
--- finished re-building 'other-strata.Rmd'

--- re-building 'phylo-expression-object.Rmd' using rmarkdown
Performing log-normalization
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building 'phylo-expression-object.Rmd'

--- re-building 'phylostratigraphy.Rmd' using rmarkdown
--- finished re-building 'phylostratigraphy.Rmd'

--- re-building 'tai-breaker.Rmd' using rmarkdown
--- finished re-building 'tai-breaker.Rmd'

--- re-building 'tai-gallery.Rmd' using rmarkdown
--- finished re-building 'tai-gallery.Rmd'

--- re-building 'tai-stats.Rmd' using rmarkdown
--- finished re-building 'tai-stats.Rmd'

--- re-building 'tai-transform.Rmd' using rmarkdown
--- finished re-building 'tai-transform.Rmd'

--- re-building 'taxonomy.Rmd' using rmarkdown

Quitting from taxonomy.Rmd:218-222 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'taxonomy.Rmd' failed with diagnostics:
ℹ In argument: `name == organism`.
Caused by error:
! `..1` must be of size 1, not size 0.
--- failed re-building 'taxonomy.Rmd'

SUMMARY: processing the following file failed:
  'taxonomy.Rmd'

Error: Vignette re-building failed.
Execution halted