Running ‘testthat.R’ [45s/62s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(deeptime)
  > 
  > test_check("deeptime")
  NULL
  NULL
  NULL
  [ FAIL 2 | WARN 0 | SKIP 38 | PASS 60 ]
  
  ══ Skipped tests (38) ══════════════════════════════════════════════════════════
  • On CRAN (29): 'test-coord_geo.R:66:3', 'test-coord_geo.R:70:3',
    'test-coord_geo.R:100:3', 'test-coord_geo.R:119:3', 'test-coord_geo.R:140:3',
    'test-coord_geo.R:152:3', 'test-coord_trans_flip.R:10:3',
    'test-coord_trans_xy.R:22:3', 'test-disparity_through_time.R:14:3',
    'test-facet_color.R:27:3', 'test-facet_color.R:99:3',
    'test-facet_color.R:145:3', 'test-facet_color.R:191:3',
    'test-get_scale_data.R:2:3', 'test-ggarrange2.R:14:3',
    'test-gggeo_scale.R:23:3', 'test-guides.R:38:3', 'test-guides.R:85:3',
    'test-guides.R:100:3', 'test-guides.R:122:3', 'test-guides.R:136:3',
    'test-patterns.R:49:3', 'test-patterns.R:65:3', 'test-patterns.R:80:3',
    'test-phylomorpho.R:22:3', 'test-points_range.R:14:3', 'test-scales.R:11:3',
    'test-scales.R:24:3', 'test-scales.R:37:3'
  • R.Version()$os != "mingw32" is TRUE (2): 'test-patterns.R:9:3',
    'test-patterns.R:99:3'
  • {ggtree} is not installed (7): 'test-coord_geo.R:161:3',
    'test-coord_geo.R:173:3', 'test-coord_geo_polar.R:1:1',
    'test-coord_geo_radial.R:1:1', 'test-geom_text_phylo.R:3:3',
    'test-guides.R:149:3', 'test-guides.R:163:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-guides.R:184:3'): guide_geo works with coord_geo_radial ────────
  Error in `revts(ggtree(tree))`: could not find function "revts"
  ── Error ('test-guides.R:200:3'): ggtree scale works with only fossil taxa ─────
  Error in `ggtree(ceratopsianTreeRaia, position = position_nudge(x = -ceratopsianTreeRaia$root.time))`: could not find function "ggtree"
  
  [ FAIL 2 | WARN 0 | SKIP 38 | PASS 60 ]
  Deleting unused snapshots:
  • coord_geo/scale-on-all-facets-new.svg
  • coord_geo/scale-on-fossil-ggtree-new.svg
  • coord_geo/scale-on-ggtree-new.svg
  • coord_geo/scales-on-different-sides1-new.svg
  • coord_geo/scales-on-different-sides2-new.svg
  • coord_geo_polar/coord-geo-polar-grey-new.svg
  • coord_geo_polar/coord-geo-polar-new.svg
  • coord_geo_polar/coord-geo-polar-pos-new.svg
  • coord_geo_polar/scale-on-fossil-ggtree-new.svg
  • coord_geo_polar/scale-on-fossil-ggtree-with-labels-new.svg
  • coord_geo_polar/stacked-scales-new.svg
  • coord_geo_radial/coord-geo-radial-new.svg
  • coord_geo_radial/scale-on-fossil-ggtree-new.svg
  • coord_geo_radial/scale-on-fossil-ggtree-with-labels-new.svg
  • coord_geo_radial/stacked-scales-new.svg
  • coord_trans_flip/coord-trans-flip-with-diff-trans-new.svg
  • coord_trans_xy/coord-trans-xy-with-expansion-new.svg
  • coord_trans_xy/coord-trans-xy-with-no-trans-new.svg
  • facet_color/facet-grid-color-blue-labels-new.svg
  • facet_color/facet-grid-color-lab-colors-new.svg
  • facet_color/facet-grid-color-triassic-blue-new.svg
  • facet_color/facet-grid-color-with-function-new.svg
  • facet_color/facet-grid-color-with-named-vector-new.svg
  • facet_color/facet-wrap-color-blue-labels-new.svg
  • geom_text_phylo/geom-text-phylo-new.svg
  • ggarrange2/double-ggarrange2-layout-new.svg
  • ggarrange2/double-ggarrange2-new.svg
  • ggarrange2/ggarrange2-layout-new.svg
  • ggarrange2/ggarrange2-no-dims-layout-new.svg
  • ggarrange2/ggarrange2-no-dims-new.svg
  • ggarrange2/ggarrange2-no-heights-layout-new.svg
  • ggarrange2/ggarrange2-no-heights-new.svg
  • ggarrange2/ggarrange2-with-layout-layout-new.svg
  • ggarrange2/ggarrange2-with-layout-new.svg
  • gggeo_scale/gggeo-scale-left-and-right-new.svg
  • gggeo_scale/gggeo-scale-top-new.svg
  • ggplot4/coord_geo/scale-on-all-facets-new.svg
  • ggplot4/coord_geo/scale-on-fossil-ggtree-new.svg
  • ggplot4/coord_geo/scale-on-ggtree-new.svg
  • ggplot4/coord_geo/scales-on-different-sides1-new.svg
  • ggplot4/coord_geo/scales-on-different-sides2-new.svg
  • ggplot4/coord_geo_polar/coord-geo-polar-grey-new.svg
  • ggplot4/coord_geo_polar/coord-geo-polar-new.svg
  • ggplot4/coord_geo_polar/coord-geo-polar-pos-new.svg
  • ggplot4/coord_geo_polar/scale-on-fossil-ggtree-new.svg
  • ggplot4/coord_geo_polar/scale-on-fossil-ggtree-with-labels-new.svg
  • ggplot4/coord_geo_polar/stacked-scales-new.svg
  • ggplot4/coord_geo_radial/coord-geo-radial-new.svg
  • ggplot4/coord_geo_radial/scale-on-fossil-ggtree-new.svg
  • ggplot4/coord_geo_radial/scale-on-fossil-ggtree-with-labels-new.svg
  • ggplot4/coord_geo_radial/stacked-scales-new.svg
  • ggplot4/coord_trans_flip/coord-trans-flip-with-diff-trans-new.svg
  • ggplot4/coord_trans_xy/coord-trans-xy-with-expansion-new.svg
  • ggplot4/coord_trans_xy/coord-trans-xy-with-no-trans-new.svg
  • ggplot4/facet_color/facet-grid-color-blue-labels-new.svg
  • ggplot4/facet_color/facet-grid-color-lab-colors-new.svg
  • ggplot4/facet_color/facet-grid-color-triassic-blue-new.svg
  • ggplot4/facet_color/facet-grid-color-with-function-new.svg
  • ggplot4/facet_color/facet-grid-color-with-named-vector-new.svg
  • ggplot4/facet_color/facet-wrap-color-blue-labels-new.svg
  • ggplot4/geom_text_phylo/geom-text-phylo-new.svg
  • ggplot4/ggarrange2/double-ggarrange2-layout-new.svg
  • ggplot4/ggarrange2/double-ggarrange2-new.svg
  • ggplot4/ggarrange2/ggarrange2-layout-new.svg
  • ggplot4/ggarrange2/ggarrange2-no-dims-layout-new.svg
  • ggplot4/ggarrange2/ggarrange2-no-dims-new.svg
  • ggplot4/ggarrange2/ggarrange2-no-heights-layout-new.svg
  • ggplot4/ggarrange2/ggarrange2-no-heights-new.svg
  • ggplot4/ggarrange2/ggarrange2-with-layout-layout-new.svg
  • ggplot4/ggarrange2/ggarrange2-with-layout-new.svg
  • ggplot4/gggeo_scale/gggeo-scale-left-and-right-new.svg
  • ggplot4/gggeo_scale/gggeo-scale-top-new.svg
  • ggplot4/guides/guide-on-fossil-coord-geo-radial-new.svg
  • ggplot4/guides/guide-on-ggtree-new.svg
  • ggplot4/guides/guide-with-coord-geo-radial-new.svg
  • ggplot4/guides/guides-on-fossil-ggtree-new.svg
  • ggplot4/patterns/geo-pattern2-new.svg
  • ggplot4/patterns/ggpattern-new.svg
  • ggplot4/patterns/scale-fill-geopattern-labels-new.svg
  • ggplot4/patterns/scale-fill-geopattern-limits-new.svg
  • ggplot4/patterns/scale-fill-geopattern-na-new.svg
  • ggplot4/patterns/scale-fill-geopattern-na2-new.svg
  • ggplot4/patterns/scale-fill-geopattern-new.svg
  • ggplot4/points_range/geom-points-range-aes-new.svg
  • ggplot4/points_range/geom-points-range-bg-new.svg
  • ggplot4/points_range/geom-points-range-h-new.svg
  • guides/guide-on-fossil-coord-geo-radial-new.svg
  • guides/guide-on-ggtree-new.svg
  • guides/guide-with-coord-geo-radial-new.svg
  • guides/guides-on-fossil-ggtree-new.svg
  • patterns/geo-pattern2-new.svg
  • patterns/ggpattern-new.svg
  • patterns/scale-fill-geopattern-labels-new.svg
  • patterns/scale-fill-geopattern-limits-new.svg
  • patterns/scale-fill-geopattern-na-new.svg
  • patterns/scale-fill-geopattern-na2-new.svg
  • patterns/scale-fill-geopattern-new.svg
  • points_range/geom-points-range-aes-new.svg
  • points_range/geom-points-range-bg-new.svg
  • points_range/geom-points-range-h-new.svg
  Error: Test failures
  Execution halted