Found the following significant warnings:
  calcll_1d_baf.cpp:51:31: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_1d_baf.cpp:56:25: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_baf.cpp:55:31: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_baf.cpp:61:25: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_cpp.cpp:54:31: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_cpp.cpp:61:25: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_p3.cpp:62:35: warning: ‘eT arma::Cube<eT>::min(arma::uword&, arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_p3.cpp:64:29: warning: ‘eT arma::Cube<eT>::min(arma::uword&, arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_p1_cpp.cpp:57:31: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  calcll_p1_cpp.cpp:66:25: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-devel/EstMix.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’