Found the following HTML validation problems:
BenchmarkValidator.html:87:1 (BenchmarkValidator.Rd:72): Warning: <h3> anchor "Methods" already defined
BenchmarkValidator.html:153:1 (BenchmarkValidator.Rd:104): Warning: <h5> anchor "Usage" already defined
BenchmarkValidator.html:176:1 (BenchmarkValidator.Rd:119): Warning: <h5> anchor "Returns" already defined
BenchmarkValidator.html:192:1 (BenchmarkValidator.Rd:128): Warning: <h5> anchor "Usage" already defined
BenchmarkValidator.html:198:1 (BenchmarkValidator.Rd:132): Warning: <h5> anchor "Arguments" already defined
BenchmarkValidator.html:213:1 (BenchmarkValidator.Rd:141): Warning: <h5> anchor "Returns" already defined
BenchmarkValidator.html:229:1 (BenchmarkValidator.Rd:150): Warning: <h5> anchor "Usage" already defined
BenchmarkValidator.html:235:1 (BenchmarkValidator.Rd:154): Warning: <h5> anchor "Arguments" already defined
BenchmarkValidator.html:250:1 (BenchmarkValidator.Rd:163): Warning: <h5> anchor "Returns" already defined
BenchmarkValidator.html:266:1 (BenchmarkValidator.Rd:172): Warning: <h5> anchor "Usage" already defined
BenchmarkValidator.html:272:1 (BenchmarkValidator.Rd:176): Warning: <h5> anchor "Arguments" already defined
BenchmarkValidator.html:285:1 (BenchmarkValidator.Rd:183): Warning: <h5> anchor "Returns" already defined
BenchmarkValidator.html:301:1 (BenchmarkValidator.Rd:192): Warning: <h5> anchor "Usage" already defined
BenchmarkValidator.html:307:1 (BenchmarkValidator.Rd:196): Warning: <h5> anchor "Arguments" already defined
BenchmarkValidator.html:322:1 (BenchmarkValidator.Rd:205): Warning: <h5> anchor "Returns" already defined
BenchmarkValidator.html:339:1 (BenchmarkValidator.Rd:214): Warning: <h5> anchor "Usage" already defined
BenchmarkValidator.html:345:1 (BenchmarkValidator.Rd:218): Warning: <h5> anchor "Arguments" already defined
PRISMAReporter.html:65:1 (PRISMAReporter.Rd:61): Warning: <h3> anchor "Methods" already defined
PRISMAReporter.html:124:1 (PRISMAReporter.Rd:90): Warning: <h5> anchor "Usage" already defined
PRISMAReporter.html:151:1 (PRISMAReporter.Rd:109): Warning: <h5> anchor "Returns" already defined
PRISMAReporter.html:167:1 (PRISMAReporter.Rd:118): Warning: <h5> anchor "Usage" already defined
PRISMAReporter.html:173:1 (PRISMAReporter.Rd:122): Warning: <h5> anchor "Arguments" already defined
PRISMAReporter.html:186:1 (PRISMAReporter.Rd:129): Warning: <h5> anchor "Returns" already defined
PRISMAReporter.html:202:1 (PRISMAReporter.Rd:138): Warning: <h5> anchor "Usage" already defined
PRISMAReporter.html:208:1 (PRISMAReporter.Rd:142): Warning: <h5> anchor "Arguments" already defined
PRISMAReporter.html:221:1 (PRISMAReporter.Rd:149): Warning: <h5> anchor "Returns" already defined
PRISMAReporter.html:238:1 (PRISMAReporter.Rd:158): Warning: <h5> anchor "Usage" already defined
PRISMAReporter.html:244:1 (PRISMAReporter.Rd:162): Warning: <h5> anchor "Arguments" already defined
PubMedConnector.html:75:1 (PubMedConnector.Rd:64): Warning: <h3> anchor "Methods" already defined
PubMedConnector.html:136:1 (PubMedConnector.Rd:93): Warning: <h5> anchor "Usage" already defined
PubMedConnector.html:166:1 (PubMedConnector.Rd:115): Warning: <h5> anchor "Returns" already defined
PubMedConnector.html:182:1 (PubMedConnector.Rd:124): Warning: <h5> anchor "Usage" already defined
PubMedConnector.html:188:1 (PubMedConnector.Rd:128): Warning: <h5> anchor "Arguments" already defined
PubMedConnector.html:203:1 (PubMedConnector.Rd:137): Warning: <h5> anchor "Returns" already defined
PubMedConnector.html:219:1 (PubMedConnector.Rd:146): Warning: <h5> anchor "Usage" already defined
PubMedConnector.html:225:1 (PubMedConnector.Rd:150): Warning: <h5> anchor "Returns" already defined
PubMedConnector.html:241:1 (PubMedConnector.Rd:159): Warning: <h5> anchor "Usage" already defined
PubMedConnector.html:247:1 (PubMedConnector.Rd:163): Warning: <h5> anchor "Returns" already defined
PubMedConnector.html:264:1 (PubMedConnector.Rd:172): Warning: <h5> anchor "Usage" already defined
PubMedConnector.html:270:1 (PubMedConnector.Rd:176): Warning: <h5> anchor "Arguments" already defined
ReproducibilityManager.html:65:1 (ReproducibilityManager.Rd:78): Warning: <h3> anchor "Methods" already defined
ReproducibilityManager.html:124:1 (ReproducibilityManager.Rd:107): Warning: <h5> anchor "Usage" already defined
ReproducibilityManager.html:151:1 (ReproducibilityManager.Rd:126): Warning: <h5> anchor "Returns" already defined
ReproducibilityManager.html:167:1 (ReproducibilityManager.Rd:135): Warning: <h5> anchor "Usage" already defined
ReproducibilityManager.html:173:1 (ReproducibilityManager.Rd:139): Warning: <h5> anchor "Arguments" already defined
ReproducibilityManager.html:186:1 (ReproducibilityManager.Rd:146): Warning: <h5> anchor "Returns" already defined
ReproducibilityManager.html:202:1 (ReproducibilityManager.Rd:155): Warning: <h5> anchor "Usage" already defined
ReproducibilityManager.html:208:1 (ReproducibilityManager.Rd:159): Warning: <h5> anchor "Arguments" already defined
ReproducibilityManager.html:221:1 (ReproducibilityManager.Rd:166): Warning: <h5> anchor "Returns" already defined
ReproducibilityManager.html:238:1 (ReproducibilityManager.Rd:175): Warning: <h5> anchor "Usage" already defined
ReproducibilityManager.html:244:1 (ReproducibilityManager.Rd:179): Warning: <h5> anchor "Arguments" already defined
SearchAnalyzer.html:241:1 (SearchAnalyzer.Rd:130): Warning: missing </ul> before </div>
SearchAnalyzer.html:84:1 (SearchAnalyzer.Rd:44): Warning: <h3> anchor "Methods" already defined
SearchAnalyzer.html:160:1 (SearchAnalyzer.Rd:86): Warning: <h5> anchor "Usage" already defined
SearchAnalyzer.html:166:1 (SearchAnalyzer.Rd:90): Warning: <h5> anchor "Returns" already defined
SearchAnalyzer.html:182:1 (SearchAnalyzer.Rd:99): Warning: <h5> anchor "Usage" already defined
SearchAnalyzer.html:188:1 (SearchAnalyzer.Rd:103): Warning: <h5> anchor "Arguments" already defined
SearchAnalyzer.html:201:1 (SearchAnalyzer.Rd:110): Warning: <h5> anchor "Returns" already defined
SearchAnalyzer.html:218:1 (SearchAnalyzer.Rd:119): Warning: <h5> anchor "Usage" already defined
SearchAnalyzer.html:224:1 (SearchAnalyzer.Rd:123): Warning: <h5> anchor "Arguments" already defined
create_analysis_template.html:46:1 (create_analysis_template.Rd:10): Warning: missing </ul> before </div>
create_data_dictionary.html:50:1 (create_data_dictionary.Rd:12): Warning: missing </ul> before </div>
create_package_manifest.html:46:1 (create_package_manifest.Rd:10): Warning: missing </ul> before </div>
create_package_readme.html:54:1 (create_package_readme.Rd:14): Warning: missing </ul> before </div>