Found the following HTML validation problems:
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Coordinate.html:333:1 (Coordinate.Rd:215): Warning: <h5> anchor "Usage" already defined
Coordinate.html:339:1 (Coordinate.Rd:219): Warning: <h5> anchor "Arguments" already defined
Kmer_Table.html:281:1 (Kmer_Table.Rd:152): Warning: missing </ul> before </div>
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Kmer_Table.html:200:1 (Kmer_Table.Rd:107): Warning: <h5> anchor "Returns" already defined
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Kmer_Table.html:264:1 (Kmer_Table.Rd:145): Warning: <h5> anchor "Arguments" already defined
NCBI_Genome.html:270:1 (NCBI_Genome.Rd:161): Warning: missing </ul> before </div>
NCBI_Genome.html:162:1 (NCBI_Genome.Rd:101): Warning: <h5> anchor "Usage" already defined
NCBI_Genome.html:168:1 (NCBI_Genome.Rd:105): Warning: <h5> anchor "Arguments" already defined
NCBI_Genome.html:184:1 (NCBI_Genome.Rd:115): Warning: <h5> anchor "Returns" already defined
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UCSC_Genome.html:302:1 (UCSC_Genome.Rd:172): Warning: missing </ul> before </div>
UCSC_Genome.html:139:1 (UCSC_Genome.Rd:79): Warning: <h5> anchor "Usage" already defined
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UCSC_Genome.html:161:1 (UCSC_Genome.Rd:93): Warning: <h5> anchor "Returns" already defined
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UCSC_Genome.html:184:1 (UCSC_Genome.Rd:106): Warning: <h5> anchor "Returns" already defined
UCSC_Genome.html:201:1 (UCSC_Genome.Rd:115): Warning: <h5> anchor "Usage" already defined
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UCSC_Genome.html:222:1 (UCSC_Genome.Rd:128): Warning: <h5> anchor "Returns" already defined
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UCSC_Genome.html:262:1 (UCSC_Genome.Rd:152): Warning: <h5> anchor "Returns" already defined
UCSC_Genome.html:279:1 (UCSC_Genome.Rd:161): Warning: <h5> anchor "Usage" already defined
UCSC_Genome.html:285:1 (UCSC_Genome.Rd:165): Warning: <h5> anchor "Arguments" already defined
catHeader.html:46:1 (catHeader.Rd:10): Warning: missing </ul> before </div>
countBaseComposition.html:60:1 (countBaseComposition.Rd:17): Warning: missing </ul> before </div>
countDistribution.html:60:1 (countDistribution.Rd:16): Warning: missing </ul> before </div>
system3.html:105:1 (system3.Rd:53): Warning: missing </ul> before </div>
writeBED.html:50:1 (writeBED.Rd:12): Warning: missing </ul> before </div>
writeVCF.html:59:1 (writeVCF.Rd:16): Warning: missing </ul> before </div>