Found the following HTML validation problems:
dot-pls.html:63:1 (dot-pls.Rd:19): Warning: missing </ul> before </div>
loadings.o2plsda.html:55:1 (loadings.o2plsda.Rd:14): Warning: missing </ul> before </div>
loadings.plsda.html:51:1 (loadings.plsda.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Waddell",
                    role = c("aut", "cre"),
                    email = "jason.waddell@openanalytics.eu")
as necessary.
Found the following HTML validation problems:
print.oaii_content_audio.html:53:1 (print.oaii_content_audio.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_aac.html:53:1 (print.oaii_content_audio_aac.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_flac.html:53:1 (print.oaii_content_audio_flac.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_mp3.html:53:1 (print.oaii_content_audio_mp3.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_opus.html:53:1 (print.oaii_content_audio_opus.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_images.html:53:1 (print.oaii_content_images.Rd:12): Warning: missing </ul> before </div>
print.oaii_files_df.html:53:1 (print.oaii_files_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_fine_tuning_events_df.html:53:1 (print.oaii_fine_tuning_events_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_fine_tuning_job.html:53:1 (print.oaii_fine_tuning_job.Rd:12): Warning: missing </ul> before </div>
print.oaii_fine_tuning_jobs_df.html:53:1 (print.oaii_fine_tuning_jobs_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_models_df.html:53:1 (print.oaii_models_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_res_se.html:53:1 (print.oaii_res_se.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jason",
                      family = "Waddell",
                      role = c("aut", "cre"),
                      email = "jason.waddell@openanalytics.eu"),
               person(given = "Willem",
                      family = "Ligtenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Rougier",
                      role = "aut",
                      email = "j.c.rougier@bristol.ac.uk"),
               person(given = c("Robin", "K.", "S."),
                      family = "Hankin",
                      role = "cre",
                      email = "hankin.robin@gmail.com"))
as necessary.
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philip Stubbings <phil@parasec.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Stubbings",
                    role = c("aut", "cre"),
                    email = "phil@parasec.net")
as necessary.
Maintainer: ‘Alejandro Ordonez <ordonezjosealejandro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Ordonez",
                      role = c("aut", "cre"),
                      email = "ordonezjosealejandro@gmail.com"),
               person(given = c("Marcos", "O."),
                      family = "Prates",
                      role = "aut"),
               person(given = c("Larissa", "A."),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos.",
                      role = "aut"))
as necessary.

The Description field contains
  Details can be found in Ordonez et al. (2020) <arXiv:2004.04341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print_payout.html:55:1 (print_payout.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calc_permeability.html:58:1 (calc_permeability.Rd:16): Warning: missing </ul> before </div>
ind_permeability.html:46:1 (ind_permeability.Rd:10): Warning: missing </ul> before </div>
ind_psp.html:50:1 (ind_psp.Rd:12): Warning: missing </ul> before </div>
obic_evalmeasure.html:50:1 (obic_evalmeasure.Rd:12): Warning: missing </ul> before </div>
obic_recommendations.html:46:1 (obic_recommendations.Rd:10): Warning: missing </ul> before </div>
obic_recommendations_bkp.html:54:1 (obic_recommendations_bkp.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Tengfei",
                      family = "Yin",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
theme_Publication.html:46:1 (theme_Publication.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘John Snyder <jcs8v6@mail.missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zheng",
                      role = "aut"),
               person(given = "John",
                      family = "Snyder",
                      role = "cre",
                      email = "jcs8v6@mail.missouri.edu"))
as necessary.
checkRd: (-1) OBMb.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
OBREMatVMatMEl11.html:70:1 (OBREMatVMatMEl11.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatMEl12.html:70:1 (OBREMatVMatMEl12.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatMEl21.html:70:1 (OBREMatVMatMEl21.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatMEl22.html:70:1 (OBREMatVMatMEl22.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatQEl11.html:70:1 (OBREMatVMatQEl11.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatQEl12.html:70:1 (OBREMatVMatQEl12.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatQEl22.html:70:1 (OBREMatVMatQEl22.Rd:22): Warning: missing </ul> before </div>
OBREmatMArgumentA.html:83:1 (OBREmatMArgumentA.Rd:33): Warning: missing </ul> before </div>
OBREmatMArgumentB.html:83:1 (OBREmatMArgumentB.Rd:33): Warning: missing </ul> before </div>
OBREmatMArgumentC.html:83:1 (OBREmatMArgumentC.Rd:33): Warning: missing </ul> before </div>
OBREnvADen.html:70:1 (OBREnvADen.Rd:22): Warning: missing </ul> before </div>
OBREnvANum1.html:70:1 (OBREnvANum1.Rd:22): Warning: missing </ul> before </div>
OBREnvANum2.html:70:1 (OBREnvANum2.Rd:22): Warning: missing </ul> before </div>
fisherEl11Part1.html:59:1 (fisherEl11Part1.Rd:16): Warning: missing </ul> before </div>
fisherEl11Part2.html:59:1 (fisherEl11Part2.Rd:16): Warning: missing </ul> before </div>
fisherEl12Part1.html:59:1 (fisherEl12Part1.Rd:16): Warning: missing </ul> before </div>
fisherEl12Part2.html:59:1 (fisherEl12Part2.Rd:16): Warning: missing </ul> before </div>
fisherEl22Part1.html:59:1 (fisherEl22Part1.Rd:16): Warning: missing </ul> before </div>
fisherEl22Part2.html:59:1 (fisherEl22Part2.Rd:16): Warning: missing </ul> before </div>
summary.html:46:1 (summary.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Paul R. Hibbing <paulhibbing@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
check_interactive.html:46:1 (check_interactive.Rd:10): Warning: missing </ul> before </div>
interactive_comp_lookup.html:62:1 (interactive_comp_lookup.Rd:19): Warning: missing </ul> before </div>
interactive_tree_intensity.html:49:1 (interactive_tree_intensity.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Found the following HTML validation problems:
check_condition.html:50:1 (check_condition.Rd:12): Warning: missing </ul> before </div>
execute_render.html:54:1 (execute_render.Rd:14): Warning: missing </ul> before </div>
execute_run_after.html:54:1 (execute_run_after.Rd:14): Warning: missing </ul> before </div>
execute_run_before.html:50:1 (execute_run_before.Rd:12): Warning: missing </ul> before </div>
leaving_page_backwards.html:54:1 (leaving_page_backwards.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yudong Chen <yudong.chen@statslab.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yudong",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "yudong.chen@statslab.cam.ac.uk"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  <arxiv:2003.03668> for online detection of sudden mean changes in a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ChangepointDetector.Rd:93: Lost braces; missing escapes or markup?
    93 | \code{'sparse'}, then only (S^{diag}, S^{off,d})
       |                               ^
checkRd: (-1) ChangepointDetector.Rd:93: Lost braces; missing escapes or markup?
    93 | \code{'sparse'}, then only (S^{diag}, S^{off,d})
       |                                         ^
checkRd: (-1) ChangepointDetector.Rd:94: Lost braces; missing escapes or markup?
    94 | and (S^{diag}, S^{off,s}) are included in \code{stat} respectively.);
       |        ^
checkRd: (-1) ChangepointDetector.Rd:94: Lost braces; missing escapes or markup?
    94 | and (S^{diag}, S^{off,s}) are included in \code{stat} respectively.);
       |                  ^
Found the following HTML validation problems:
print.ChangepointDetector.html:51:1 (print.ChangepointDetector.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Luke Miller <contact@lukemiller.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plotWaveSpectrum.html:51:1 (plotWaveSpectrum.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
argShow.html:58:1 (argShow.Rd:16): Warning: missing </ul> before </div>
handleFlags-vector-method.html:69:1 (handleFlags-vector-method.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_alpha.html:46:1 (check_alpha.Rd:10): Warning: missing </ul> before </div>
check_honesty_inference.html:54:1 (check_honesty_inference.Rd:14): Warning: missing </ul> before </div>
check_maxdepth.html:46:1 (check_maxdepth.Rd:10): Warning: missing </ul> before </div>
check_minnodesize.html:46:1 (check_minnodesize.Rd:10): Warning: missing </ul> before </div>
check_ntrees.html:46:1 (check_ntrees.Rd:10): Warning: missing </ul> before </div>
check_samplefraction.html:46:1 (check_samplefraction.Rd:10): Warning: missing </ul> before </div>
check_x_y.html:50:1 (check_x_y.Rd:12): Warning: missing </ul> before </div>
forest_weights_fitted_cpp.html:58:1 (forest_weights_fitted_cpp.Rd:18): Warning: missing </ul> before </div>
forest_weights_predicted_cpp.html:63:1 (forest_weights_predicted_cpp.Rd:21): Warning: missing </ul> before </div>
honest_fitted_cpp.html:68:1 (honest_fitted_cpp.Rd:24): Warning: missing </ul> before </div>
honest_predictions_cpp.html:68:1 (honest_predictions_cpp.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.oclust.html:86:1 (plot.oclust.Rd:37): Warning: missing </ul> before </div>
print.oclust.html:51:1 (print.oclust.Rd:12): Warning: missing </ul> before </div>
print.summary.oclust.html:55:1 (print.summary.oclust.Rd:14): Warning: missing </ul> before </div>
summary.oclust.html:51:1 (summary.oclust.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Andrea Pagotto <ajpagotto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Pagotto",
                    role = c("aut", "cre"),
                    email = "ajpagotto@gmail.com")
as necessary.

The Description field contains
  and MacKay (2007) <arXiv:0710.3742> for univariate or multivariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) onlineCPD.Rd:35: Lost braces
    35 |  function(x, lambda){const_hazard(x, lambda=100)}
       |                     ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘duckdb_connection.R’ ‘get_database_functions.R’ ‘mysql_connection.R’
    ‘postgres_connection.R’ ‘snowflake_connection.R’
    ‘sqlite_connection.R’ ‘submit_query.R’ ‘vertica_connection.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘octopus_api.R’
Found the following HTML validation problems:
check_datetime_format.html:47:1 (check_datetime_format.Rd:10): Warning: missing </ul> before </div>
check_logical.html:47:1 (check_logical.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
OdbcConnection.html:199:1 (OdbcConnection.Rd:132): Warning: missing </ul> before </div>
OdbcDriver.html:76:1 (OdbcDriver.Rd:35): Warning: missing </ul> before </div>
OdbcResult.html:102:1 (OdbcResult.Rd:57): Warning: missing </ul> before </div>
SQLServer.html:90:1 (SQLServer.Rd:70): Warning: <h4> anchor "+E2+80+98odbcConnectionColumns_+28+29+E2+80+99" already defined
driver-Snowflake.html:83:1 (driver-Snowflake.Rd:26): Warning: missing </ul> before </div>
isTempTable.html:63:1 (isTempTable.Rd:21): Warning: missing </ul> before </div>
odbcPreviewQuery.html:68:1 (odbcPreviewQuery.Rd:26): Warning: missing </ul> before </div>
Found the following HTML validation problems:
metadata.html:60:1 (metadata.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Sevvandi Kandanaarachchi <sevvandik@gmail.com>’

The Description field contains
  anomalies (Kandanaarachchi, Hyndman 2022) <arXiv:2210.07407>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Sascha",
                      family = "Thomsen",
                      role = "aut"))
as necessary.
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Muntashir-Al-Arefin <muntashir.a2i@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Muntashir-Al-Arefin",
                    role = c("aut", "cre"),
                    email = "muntashir.a2i@gmail.com")
as necessary.
Found the following HTML validation problems:
plot.power.html:116:1 (plot.power.Rd:55): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.html:55:1 (print.Rd:14): Warning: missing </ul> before </div>
summary.html:56:1 (summary.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Found the following HTML validation problems:
body_add_xml.html:56:1 (body_add_xml.Rd:15): Warning: missing </ul> before </div>
notes_location_label.html:51:1 (notes_location_label.Rd:12): Warning: missing </ul> before </div>
notes_location_type.html:51:1 (notes_location_type.Rd:12): Warning: missing </ul> before </div>
pack_folder.html:51:1 (pack_folder.Rd:12): Warning: missing </ul> before </div>
sanitize_images.html:49:1 (sanitize_images.Rd:10): Warning: missing </ul> before </div>
stop_if_not_in_slide_range.html:59:1 (stop_if_not_in_slide_range.Rd:17): Warning: missing </ul> before </div>
unpack_folder.html:51:1 (unpack_folder.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = "Qianying",
                      family = "Liu",
                      role = "aut"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
NEWS.html:91:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:91:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:91:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:91:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:92:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:92:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:92:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:92:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:93:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:93:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:93:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:93:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:94:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:94:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:94:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:94:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:95:81 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:95:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:95:208 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:95:212 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:91:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:91:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:92:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:92:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:93:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:93:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:94:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:94:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:95:81 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:95:208 (NEWS.Rd:47): Warning: trimming empty <p>
Maintainer: ‘Hai-Tang Chiou <htchiou1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hai-Tang",
                      family = "Chiou",
                      role = c("aut", "cre"),
                      email = "htchiou1@gmail.com"),
               person(given = "Ching-Kang",
                      family = "Ing",
                      role = "aut"),
               person(given = c("Tze", "Leung"),
                      family = "Lai",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘set_parameters.Rd’
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘01-opIndicators.R’
Maintainer: ‘Matheus H. J. Saldanha <mhjsaldanha@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/matheushjs/ollggamma
which should likely be
  https://github.com/matheushjs/ollggamma/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘OLStraj.R’ ‘cbc_lm.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’
Maintainer: ‘Yujiao Mai <yujiaomai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yujiao",
                      family = "Mai",
                      role = c("cre", "aut"),
                      email = "yujiaomai@gmail.com"),
               person(given = c("Deo", "Kumar"),
                      family = "Srivastava",
                      role = "aut"),
               person(given = c("Kevin", "R."),
                      family = "Krull",
                      role = "aut"))
as necessary.
Maintainer: ‘Hae Kyung Im <haky@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hae", "Kyung"),
                      family = "Im",
                      role = c("aut", "cre"),
                      email = "haky@uchicago.edu"),
               person(given = c("Heather", "E."),
                      family = "Wheeler",
                      role = "aut"),
               person(given = c("Keston", "Aquino"),
                      family = "Michaels",
                      role = "aut"),
               person(given = "Vassily",
                      family = "Trubetskoy",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘krigr_cross_validation.Rd’:
    \keyword{prediction,}
  File ‘make_PCs_irlba.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
  File ‘make_PCs_svd.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
Found the following HTML validation problems:
shared-upset.html:77:1 (shared-upset.Rd:28): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.cvo2m.html:55:1 (print.cvo2m.Rd:14): Warning: missing </ul> before </div>
print.o2m.html:51:1 (print.o2m.Rd:12): Warning: missing </ul> before </div>
print.pre.o2m.html:51:1 (print.pre.o2m.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ctassoc.Rd’:
    https://doi.org/10.1080/03610927608827353
Maintainer: ‘Patrick O'Keefe <okeefep@ohsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "O'Keefe",
                    role = c("aut", "cre"),
                    email = "okeefep@ohsu.edu")
as necessary.
Maintainer: ‘Qi Yan <qiy17@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qi",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "qiy17@pitt.edu")
as necessary.
Found the following HTML validation problems:
assertCharacter.html:89:1 (assertCharacter.Rd:37): Warning: missing </ul> before </div>
assertChoice.html:88:1 (assertChoice.Rd:36): Warning: missing </ul> before </div>
assertClass.html:84:1 (assertClass.Rd:34): Warning: missing </ul> before </div>
assertList.html:88:1 (assertList.Rd:36): Warning: missing </ul> before </div>
assertLogical.html:78:1 (assertLogical.Rd:30): Warning: missing </ul> before </div>
assertNumeric.html:98:1 (assertNumeric.Rd:42): Warning: missing </ul> before </div>
assertTable.html:94:1 (assertTable.Rd:40): Warning: missing </ul> before </div>
assertTrue.html:58:1 (assertTrue.Rd:16): Warning: missing </ul> before </div>
exportSummarisedResult.html:81:1 (exportSummarisedResult.Rd:33): Warning: missing </ul> before </div>
validateNameLevel.html:69:1 (validateNameLevel.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dateRange-startDate.html:42:1 (dateRange-startDate.Rd:9): Warning: missing </ul> before </div>
interval.html:40:1 (interval.Rd:7): Warning: missing </ul> before </div>
Found the following HTML validation problems:
omopViewerPanels.html:48:1 (omopViewerPanels.Rd:11): Warning: missing </ul> before </div>
omopViewerResults.html:48:1 (omopViewerResults.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_colwise.html:46:1 (as_colwise.Rd:10): Warning: missing </ul> before </div>
new_solution.html:78:1 (new_solution.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
knit_print.svg.html:46:1 (knit_print.svg.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
make_omelette.html:54:1 (make_omelette.Rd:14): Warning: missing </ul> before </div>
plate_omelette.html:57:1 (plate_omelette.Rd:20): Warning: missing </ul> before </div>
plate_omelette_rxnko.html:48:1 (plate_omelette_rxnko.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) dot-discoveryRequest.Rd:15-16: Lost braces
    15 | \item{service}{One of {"locations", "deployments", "deviceCategories", "devices",
       |                       ^
checkRd: (-1) dot-discoveryRequest.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{method}{One of {"get", "getTree"}}
       |                      ^
checkRd: (-1) dot-saveAsFile.Rd:19: Lost braces; missing escapes or markup?
    19 | (numeric) Result code from {0: done, -1: error, -2: fileExists}
       |                            ^
Found the following HTML validation problems:
dot-log.html:50:1 (dot-log.Rd:12): Warning: missing </ul> before </div>
dot-prettyPrint.html:63:1 (dot-prettyPrint.Rd:19): Warning: missing </ul> before </div>
dot-print.html:56:1 (dot-print.Rd:15): Warning: missing </ul> before </div>
dot-printErrorMessage.html:47:1 (dot-printErrorMessage.Rd:10): Warning: missing </ul> before </div>
dot-printProductOrderStats.html:56:1 (dot-printProductOrderStats.Rd:15): Warning: missing </ul> before </div>
dot-printProductRequest.html:54:1 (dot-printProductRequest.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-label_index.html:57:1 (dot-label_index.Rd:16): Warning: missing </ul> before </div>
dot-validate_group_stratum_nesting.html:52:1 (dot-validate_group_stratum_nesting.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
glds.html:81:1 (glds.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.
Maintainer: ‘Aniko Szabo <aszabo@mcw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aniko",
                      family = "Szabo",
                      role = c("aut", "cre"),
                      email = "aszabo@mcw.edu"),
               person(given = "Lisa",
                      family = "Pappas",
                      role = "aut"))
as necessary.
checkRd: (-1) oncotree.fit.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
export_formattableWidget.html:63:1 (export_formattableWidget.Rd:19): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘global.R’
Maintainer: ‘Eric E. Graves <gravcon5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eric", "E."),
                    family = "Graves",
                    role = c("aut", "cre"),
                    email = "gravcon5@gmail.com")
as necessary.
Found the following HTML validation problems:
acum.html:46:1 (acum.Rd:10): Warning: missing </ul> before </div>
generate_overlapping_batches.html:54:1 (generate_overlapping_batches.Rd:14): Warning: missing </ul> before </div>
load_onemap_sequences.html:46:1 (load_onemap_sequences.Rd:10): Warning: missing </ul> before </div>
map_save_ram.html:95:1 (map_save_ram.Rd:42): Warning: missing </ul> before </div>
save_onemap_sequences.html:54:1 (save_onemap_sequences.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
search_geo.html:55:1 (search_geo.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Holger von Jouanne-Diedrich <holger.jouanne-diedrich@h-ab.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "von Jouanne-Diedrich",
                    role = c("aut", "cre"),
                    email = "holger.jouanne-diedrich@h-ab.de")
as necessary.
Maintainer: ‘Jun Li <jli49@kent.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lingjun",
                      family = "Li",
                      role = "aut"),
               person(given = "Jun",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "jli49@kent.edu"))
as necessary.

The Description field contains
  <arXiv:1911.07762>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
lapply_cbind.html:54:1 (lapply_cbind.Rd:14): Warning: missing </ul> before </div>
lapply_cbind_df.html:54:1 (lapply_cbind_df.Rd:14): Warning: missing </ul> before </div>
lapply_rbind.html:54:1 (lapply_rbind.Rd:14): Warning: missing </ul> before </div>
lapply_rbind_df.html:54:1 (lapply_rbind_df.Rd:14): Warning: missing </ul> before </div>
lp_vector_cpp.html:44:1 (lp_vector_cpp.Rd:9): Warning: missing </ul> before </div>
print_to_message.html:46:1 (print_to_message.Rd:10): Warning: missing </ul> before </div>
pst.html:46:1 (pst.Rd:10): Warning: missing </ul> before </div>
rls_update_cpp.html:77:1 (rls_update_cpp.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘David Degras <ddegrasv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Degras",
                      role = c("aut", "cre"),
                      email = "ddegrasv@gmail.com"),
               person(given = "Herve",
                      family = "Cardot",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tab_onsv.R’ ‘tab_onsv.Rd’
Maintainer: ‘Sergei Tarasov <sergei.tarasov@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Tarasov",
                    role = c("aut", "cre"),
                    email = "sergei.tarasov@helsinki.fi")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘1onto.R’ ‘edit_matches.R’
Found the following HTML validation problems:
make_tree.html:57:1 (make_tree.Rd:17): Warning: missing </ul> before </div>
show-onto-method.html:47:1 (show-onto-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Found the following HTML validation problems:
check.html:50:1 (check.Rd:12): Warning: missing </ul> before </div>
get_term_property.html:58:1 (get_term_property.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Found the following HTML validation problems:
private.html:46:1 (private.Rd:10): Warning: missing </ul> before </div>
super.html:46:1 (super.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>’

The BugReports field in DESCRIPTION has
  https://github.com/sthawinke/oosse
which should likely be
  https://github.com/sthawinke/oosse/issues
instead.
Maintainer: ‘Philipp Külpmann <philipp@kuelpmann.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de",
                      comment = c(ORCID = "0000-0002-5818-6958")),
               person(given = "Sebastian",
                      family = "Malkusch",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6766-140X")),
               person(given = "Alfred",
                      family = "Ultsch",
                      role = "aut",
                      comment = c(ORCID = "0000-0002-7845-3283")))
as necessary.
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Petr",
                      family = "Simecek",
                      role = "aut",
                      email = "simecek@gmail.com"),
               person(given = "Juergen",
                      family = "Pilz",
                      role = "aut",
                      email = "juergen.pilz@aau.at"),
               person(given = "Mingui",
                      family = "Wang",
                      role = "aut",
                      email = "mail.mwang@gmail.com"),
               person(given = "Albrecht",
                      family = "Gebhardt.",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Found the following HTML validation problems:
dot-openBankingClient.html:202:1 (dot-openBankingClient.Rd:109): Warning: missing </ul> before </div>
dot-openBankingClient.html:124:1 (dot-openBankingClient.Rd:67): Warning: <h5> anchor "Usage" already defined
dot-openBankingClient.html:130:1 (dot-openBankingClient.Rd:71): Warning: <h5> anchor "Returns" already defined
dot-openBankingClient.html:147:1 (dot-openBankingClient.Rd:80): Warning: <h5> anchor "Usage" already defined
dot-openBankingClient.html:153:1 (dot-openBankingClient.Rd:84): Warning: <h5> anchor "Returns" already defined
dot-openBankingClient.html:170:1 (dot-openBankingClient.Rd:93): Warning: <h5> anchor "Usage" already defined
dot-openBankingClient.html:176:1 (dot-openBankingClient.Rd:97): Warning: <h5> anchor "Arguments" already defined
dot-openBankingClient.html:191:1 (dot-openBankingClient.Rd:106): Warning: <h5> anchor "Returns" already defined
Found the following HTML validation problems:
opencage_key.html:52:1 (opencage_key.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Aaron",
                      family = "Puchert",
                      role = "aut",
                      email = "aaronpuchert@alice-dsl.net"))
as necessary.
License stub is invalid DCF.
File ‘OpenCL/libs/R_OpenCL.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Running ‘buffer.R’ [0s/1s]
  Comparing ‘buffer.Rout’ to ‘buffer.Rout.save’ ...5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< > 
  Running ‘kernel.R’ [2s/3s]
  Comparing ‘kernel.Rout’ to ‘kernel.Rout.save’ ...5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< >
Maintainer: ‘Kari Gunnarsson <kari.gunnarsson@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kari",
                    family = "Gunnarsson",
                    role = c("aut", "cre"),
                    email = "kari.gunnarsson@outlook.com")
as necessary.
Found the following HTML validation problems:
print.openEBGM.html:56:1 (print.openEBGM.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
collection_viewer.html:53:1 (collection_viewer.Rd:14): Warning: missing </ul> before </div>
conformance.html:49:1 (conformance.Rd:11): Warning: missing </ul> before </div>
delete_service.html:51:1 (delete_service.Rd:13): Warning: missing </ul> before </div>
delete_user_process.html:52:1 (delete_user_process.Rd:13): Warning: missing </ul> before </div>
list_jobs.html:47:1 (list_jobs.Rd:11): Warning: missing </ul> before </div>
logout.html:47:1 (logout.Rd:11): Warning: missing </ul> before </div>
print.ProcessInfo.html:51:1 (print.ProcessInfo.Rd:12): Warning: missing </ul> before </div>
print.User.html:51:1 (print.User.Rd:12): Warning: missing </ul> before </div>
process_viewer.html:53:1 (process_viewer.Rd:14): Warning: missing </ul> before </div>
toJSON-deprecated.html:52:1 (toJSON-deprecated.Rd:17): Warning: missing </ul> before </div>
update_user_process.html:76:1 (update_user_process.Rd:28): Warning: missing </ul> before </div>
validate_process.html:56:1 (validate_process.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘format_search_term.R’ ‘openFDA.R’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [1s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(opengraph)
  > 
  > test_check('opengraph')
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 8 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-property.R:3:3'): og_property works ──────────────────────────
  og_property("https://www.rstudio.com", "og:title") (`actual`) isn't fully contained within c("Posit", NA_character_) (`expected`).
  * Missing from `expected`: "Posit | The Open-Source Data Science Company"
  * Present in `expected`:   "Posit", NA
  
  ── Failure ('test-validate.R:7:3'): og_validate() works ────────────────────────
  og_validate(web) (`actual`) not equal to TRUE (`expected`).
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 8 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
GaborFeatureExtract.html:65:1 (GaborFeatureExtract.Rd:140): Warning: <h3> anchor "Methods" already defined
GaborFeatureExtract.html:119:1 (GaborFeatureExtract.Rd:165): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:160:1 (GaborFeatureExtract.Rd:195): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:180:1 (GaborFeatureExtract.Rd:213): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:225:1 (GaborFeatureExtract.Rd:249): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:245:1 (GaborFeatureExtract.Rd:267): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:290:1 (GaborFeatureExtract.Rd:303): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:300:1 (GaborFeatureExtract.Rd:311): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:325:1 (GaborFeatureExtract.Rd:327): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:337:1 (GaborFeatureExtract.Rd:337): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:368:1 (GaborFeatureExtract.Rd:358): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:374:1 (GaborFeatureExtract.Rd:362): Warning: <h5> anchor "Arguments" already defined
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acs12.Rd’ ‘arbuthnot.Rd’ ‘ask.Rd’ ‘biontech_adolescents.Rd’
    ‘birds.Rd’ ‘blizzard_salary.Rd’ ‘census.Rd’ ‘cia_factbook.Rd’
    ‘climber_drugs.Rd’ ‘comics.Rd’ ‘daycare_fines.Rd’ ‘dotPlot.Rd’
    ‘drone_blades.Rd’ ‘epa2021.Rd’ ‘exam_grades.Rd’ ‘fact_opinion.Rd’
    ‘family_college.Rd’ ‘fish_age.Rd’ ‘friday.Rd’ ‘gdp_countries.Rd’
    ‘gss_wordsum_class.Rd’ ‘house.Rd’ ‘iowa.Rd’ ‘ipo.Rd’ ‘iran.Rd’
    ‘labor_market_discriminiation.Rd’ ‘lecture_learning.Rd’
    ‘lego_population.Rd’ ‘lego_sample.Rd’ ‘lizard_run.Rd’
    ‘london_boroughs.Rd’ ‘london_murders.Rd’ ‘malaria.Rd’ ‘mariokart.Rd’
    ‘mlb_teams.Rd’ ‘mlbbat10.Rd’ ‘mn_police_use_of_force.Rd’
    ‘nba_finals.Rd’ ‘nba_finals_teams.Rd’ ‘nycflights.Rd’ ‘orings.Rd’
    ‘oscars.Rd’ ‘paralympic_1500.Rd’ ‘piracy.Rd’ ‘race_justice.Rd’
    ‘simpsons_paradox_covid.Rd’ ‘soda.Rd’ ‘sowc_child_mortality.Rd’
    ‘sowc_demographics.Rd’ ‘sowc_maternal_newborn.Rd’ ‘ssd_speed.Rd’
    ‘twins.Rd’ ‘ucla_textbooks_f18.Rd’ ‘us_temperature.Rd’ ‘usb_admit.Rd’
    ‘world_pop.Rd’
Found the following HTML validation problems:
lab_report.html:88:1 (lab_report.Rd:41): Warning: missing </ul> before </div>
openintro_pal.html:54:1 (openintro_pal.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
acessor.html:69:1 (acessor.Rd:24): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’ ‘weather_now.R’
Maintainer: ‘Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuseppe",
                      family = "Casalicchio",
                      role = c("aut", "cre"),
                      email = "giuseppe.casalicchio@stat.uni-muenchen.de"),
               person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Dominik",
                      family = "Kirchhoff",
                      role = "aut",
                      email = "dom.kirchhoff@gmail.com"),
               person(given = "Michel",
                      family = "Lang",
                      role = "aut",
                      email = "michellang@gmail.com"),
               person(given = "Benjamin",
                      family = "Hofner",
                      role = "aut",
                      email = "benjamin.hofner@fau.de"),
               person(given = "Jakob",
                      family = "Bossek",
                      role = "aut",
                      email = "j.bossek@gmail.com"),
               person(given = "Pascal",
                      family = "Kerschke",
                      role = "aut",
                      email = "kerschke@uni-muenster.de"),
               person(given = "Joaquin",
                      family = "Vanschoren",
                      role = "aut",
                      email = "joaquin.vanschoren@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
uploadOMLTask.html:103:1 (uploadOMLTask.Rd:51): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_at_age_ts.html:67:1 (get_at_age_ts.Rd:25): Warning: missing </ul> before </div>
get_ts.html:105:1 (get_ts.Rd:73): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘OpenRange_api_load_species.Rd’ ‘OpenRange_api_species.Rd’
    ‘OpenRange_load_species.Rd’ ‘OpenRange_sf.R’ ‘OpenRange_species.Rd’
Found the following HTML validation problems:
calculate_similarity.html:54:1 (calculate_similarity.Rd:14): Warning: missing </ul> before </div>
check_excel_input.html:46:1 (check_excel_input.Rd:10): Warning: missing </ul> before </div>
check_excel_input_test.html:46:1 (check_excel_input_test.Rd:10): Warning: missing </ul> before </div>
count_matches.html:50:1 (count_matches.Rd:12): Warning: missing </ul> before </div>
dt_default.html:50:1 (dt_default.Rd:12): Warning: missing </ul> before </div>
emptify_object.html:46:1 (emptify_object.Rd:10): Warning: missing </ul> before </div>
make-names.html:48:1 (make-names.Rd:13): Warning: missing </ul> before </div>
network_graph_images.html:130:1 (network_graph_images.Rd:65): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Jakub Jędrusiak [aut, cre, cph] (<https://orcid.org/0000-0002-6481-8210>, University of Wroclaw), Peter Organisciak [ctb] (<https://orcid.org/0000-0002-9058-2280>, University of Denver), Selcuk Acar [ctb] (<https://orcid.org/0000-0003-4044-985X>, University of North Texas), Denis Dumas [ctb] (<https://orcid.org/0000-0002-8446-4720>, University of Georgia), Pier-Luc de Chantal [ctb] (<https://orcid.org/0000-0002-6974-6172>, Université du Québec à Montréal), Kelly Berthiaume [ctb] (<https://orcid.org/0000-0002-5285-0512>, University of North Texas)’
  Authors@R: ‘Jakub Jędrusiak [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-6481-8210>, affiliation: University of Wroclaw), Peter Organisciak [ctb] (ORCID: <https://orcid.org/0000-0002-9058-2280>, affiliation: University of Denver), Selcuk Acar [ctb] (ORCID: <https://orcid.org/0000-0003-4044-985X>, affiliation: University of North Texas), Denis Dumas [ctb] (ORCID: <https://orcid.org/0000-0002-8446-4720>, affiliation: University of Georgia), Pier-Luc de Chantal [ctb] (ORCID: <https://orcid.org/0000-0002-6974-6172>, affiliation: Université du Québec à Montréal), Kelly Berthiaume [ctb] (ORCID: <https://orcid.org/0000-0002-5285-0512>, affiliation: University of North Texas)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘oscai.R’
Maintainer: ‘Win Cowger <wincowger@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#Open-Specy_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Found the following HTML validation problems:
pbkdf.html:60:1 (pbkdf.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
autoplot.osmtile.html:55:1 (autoplot.osmtile.Rd:14): Warning: missing </ul> before </div>
plot.osmtile.html:63:1 (plot.osmtile.Rd:18): Warning: missing </ul> before </div>
print.OpenStreetMap.html:51:1 (print.OpenStreetMap.Rd:12): Warning: missing </ul> before </div>
projectMercator.html:54:1 (projectMercator.Rd:14): Warning: missing </ul> before </div>
raster-osmtile-method.html:51:1 (raster-osmtile-method.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.eava_summary.html:52:1 (print.eava_summary.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
all.equal.html:55:1 (all.equal.Rd:15): Warning: missing </ul> before </div>
as_POSIXct_utc.html:46:1 (as_POSIXct_utc.Rd:10): Warning: missing </ul> before </div>
temp_xlsx.html:46:1 (temp_xlsx.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Romain Francois <romain@r-enthusiasts.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Romain",
                    family = "Francois",
                    role = c("aut", "cre"),
                    email = "romain@r-enthusiasts.com")
as necessary.
Found the following HTML validation problems:
not-in.html:50:1 (not-in.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de",
                      comment = c(ORCID = "0000-0002-5818-6958")),
               person(given = "Sebastian",
                      family = "Malkusch",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6766-140X")),
               person(given = "Martin",
                      family = "Maechler",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Rousseeuw",
                      role = "ctb"),
               person(given = "Anja",
                      family = "Struyf",
                      role = "ctb"),
               person(given = "Mia",
                      family = "Hubert",
                      role = "ctb"),
               person(given = "Kurt",
                      family = "Hornik",
                      role = "ctb"))
as necessary.
Maintainer: ‘Monsuru Adepeju <monsuur2010@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monsuru",
                      family = "Adepeju,",
                      role = c("cre", "aut")),
               person(given = "Monsuru",
                      family = "Adepeju",
                      role = "cre",
                      email = "monsuur2010@yahoo.com"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/MAnalytics/opitools/issues/1
which should likely be
  https://github.com/MAnalytics/opitools/issues/1/issues
instead.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) word_imp.Rd:14: Lost braces
    14 | number of individual records. An \code{n} x code{2} dataframe can
       |                                                 ^
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
checkRd: (-1) MonteCarlo.Rd:23: Lost braces
    23 | N is computed from \code{p} length. M is code{10^4} by default.
       |                                              ^
Maintainer: ‘Seung Won Hyun <yellowatom09@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seung", "Won"),
                      family = "Hyun",
                      role = c("aut", "cre"),
                      email = "yellowatom09@gmail.com"),
               person(given = c("Weng", "Kee"),
                      family = "Wong",
                      role = "aut"),
               person(given = "Yarong",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Mizanur Khondoker <mizanur.khondoker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mizanur",
                    family = "Khondoker",
                    role = c("aut", "cre"),
                    email = "mizanur.khondoker@gmail.com")
as necessary.
Found the following HTML validation problems:
dot-rangeCheck.html:59:1 (dot-rangeCheck.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_inputs.html:154:1 (check_inputs.Rd:71): Warning: missing </ul> before </div>
Maintainer: ‘Bruno Remillard <bruno.remillard@hec.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Remillard",
                    role = c("aut", "cre"),
                    email = "bruno.remillard@hec.ca")
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) drawdesign.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:44: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Nicholas Hamilton <n.hamilton@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "n.hamilton@unsw.edu.au")
as necessary.
checkRd: (-1) gnu_style.Rd:24: Lost braces
    24 | [GNU Command Line Standards]{http://www.gnu.org/prep/standards/standards.html}
       |                             ^
Maintainer: ‘Monica Lopez Raton <monica.lopez.raton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monica",
                      family = "Lopez-Raton",
                      role = "aut"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"),
               person(given = c("Monica", "Lopez"),
                      family = "Raton",
                      role = "cre",
                      email = "monica.lopez.raton@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running ‘testthat.R’ [37s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(optimall)
  > 
  > test_check("optimall")
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 262 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On Linux (1): 'test-optimall_shiny.R:15:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-allocate_wave.R:250:3'): the output of allocate_wave is as expected ──
  output$nsample_actual not equal to ...$stratum_size.
  2/3 mismatches (average diff: 1)
  [1] 9 -  8 ==  1
  [2] 9 - 10 == -1
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 262 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Michael",
                      family = "Sklar",
                      role = "aut"),
               person(given = c("Abba", "M."),
                      family = "Krieger",
                      role = "aut"),
               person(given = "David",
                      family = "Azriel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  M. Krieger, Michael Sklar and David Azriel (2020) <arXiv:1905.03337>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiao Lin <xlin3@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiao",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "xlin3@mdanderson.org"),
               person(given = "Xuelin",
                      family = "Huang",
                      role = "aut",
                      email = "xlhuang@mdanderson.org"))
as necessary.
Maintainer: ‘Enrique del Castillo <exd13@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Enrique", "del"),
                      family = "Castillo",
                      role = c("aut", "cre"),
                      email = "exd13@psu.edu"),
               person(given = "Peng",
                      family = "Chen",
                      role = "aut"),
               person(given = "Adam",
                      family = "Meyers",
                      role = "aut"),
               person(given = "John",
                      family = "Hunt",
                      role = "aut"),
               person(given = "James",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
get_info.html:46:1 (get_info.Rd:10): Warning: missing </ul> before </div>
samplingf.html:72:1 (samplingf.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘Vithor Rosa Franco <vithorfranco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vithor", "Rosa"),
                    family = "Franco",
                    role = c("aut", "cre"),
                    email = "vithorfranco@gmail.com")
as necessary.

The Description field contains
  Ruder (2016) <arXiv:1609.04747v2>. Currently, the Steepest 2-Groups
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kai Husmann <kai.husmann@uni-goettingen.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Florian Gerber <flora.fauna.gerber@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Edgar Bueno <edgar.bueno@stat.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edgar",
                    family = "Bueno",
                    role = c("aut", "cre"),
                    email = "edgar.bueno@stat.su.se")
as necessary.
Maintainer: ‘Mitchell Lyons <mitchell.lyons@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘find_optimal.Rd’:
    \keyword{optimal,}
    \keyword{partition,}
  File ‘get_characteristic.Rd’:
    \keyword{characteristic,}
    \keyword{diagnostic,}
  File ‘merge_clusters.Rd’:
    \keyword{iterative,}
    \keyword{merging,}
    \keyword{reallocation,}
Maintainer: ‘Antoine Champion <antoine.champion@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Champion",
                    role = c("aut", "cre"),
                    email = "antoine.champion@outlook.com")
as necessary.
Maintainer: ‘Doug Kelkhoff <doug.kelkhoff@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://matrix.to/#/#r-pkg-options:matrix.org
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Found the following HTML validation problems:
assert_naming_fn_signature.html:46:1 (assert_naming_fn_signature.Rd:10): Warning: missing </ul> before </div>
option_spec.html:166:1 (option_spec.Rd:109): Warning: missing </ul> before </div>
Maintainer: ‘John T. Buynak <jbuynak94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Buynak",
                    role = c("aut", "cre"),
                    email = "jbuynak94@gmail.com")
as necessary.
Maintainer: ‘Robin Wellmann <r.wellmann@uni-hohenheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Wellmann",
                    role = c("aut", "cre"),
                    email = "r.wellmann@uni-hohenheim.de")
as necessary.
Found the following HTML validation problems:
show-BlockedInfinitySparseMatrix-method.html:47:1 (show-BlockedInfinitySparseMatrix-method.Rd:10): Warning: missing </ul> before </div>
show-InfinitySparseMatrix-method.html:48:1 (show-InfinitySparseMatrix-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
new_strat.html:63:1 (new_strat.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Prakash <prakash2@uwalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Prakash",
                    role = c("aut", "cre"),
                    email = "prakash2@uwalumni.com",
                    comment = "PKS Prakash")
as necessary.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "H."),
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jaekim8080@gmail.com")
as necessary.
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gero",
                    family = "Szepannek",
                    role = c("aut", "cre"),
                    email = "gero.szepannek@web.de")
as necessary.
Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adetayo",
                      family = "Kasim",
                      role = "aut"),
               person(given = "Martin",
                      family = "Otava",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Rudradev",
                      family = "Sengupta",
                      role = "cre",
                      email = "rudradev.sengupta@uhasselt.be"))
as necessary.
Maintainer: ‘Emily V. Dressler <EmilyVDressler@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emily", "V."),
                      family = "Dressler",
                      role = c("aut", "cre"),
                      email = "emilyvdressler@gmail.com"),
               person(given = c("PhD", "Zhengyan"),
                      family = "Huang",
                      role = "aut"))
as necessary.
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "Alberto", "Cardozo"),
                    family = "Delgado",
                    role = c("aut", "cre"),
                    email = "cardozorpackages@gmail.com")
as necessary.
Maintainer: ‘Christian Sims <christian_j_sims@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Sims",
                    role = c("aut", "cre"),
                    email = "christian_j_sims@yahoo.com")
as necessary.
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kaspar",
                    family = "Rufibach",
                    role = c("aut", "cre"),
                    email = "kaspar.rufibach@gmail.com")
as necessary.
checkRd: (-1) internal.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:56-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:62-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:70: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Philippe Lambert <p.lambert@uliege.be>’

The Description field contains
  <doi:10.1177/1471082X231181173> ; Preprint: <arXiv:2210.01668>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘James A. Fordyce <jfordyce@utk.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Fordyce",
                      role = "aut"),
               person(given = c("James", "A."),
                      family = "Fordyce",
                      role = "cre",
                      email = "jfordyce@utk.edu"))
as necessary.
Maintainer: ‘Marco Corneli <marcogenni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Corneli",
                      role = c("aut", "cre"),
                      email = "marcogenni@gmail.com"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"))
as necessary.
Maintainer: ‘Ken Ryan <kjryan@mail.wvu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ken",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "kjryan@mail.wvu.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
Agresti_equation_1.html:54:1 (Agresti_equation_1.Rd:14): Warning: missing </ul> before </div>
Agresti_equation_2.html:58:1 (Agresti_equation_2.Rd:16): Warning: missing </ul> before </div>
Agresti_equation_3.html:54:1 (Agresti_equation_3.Rd:14): Warning: missing </ul> before </div>
Agresti_f.html:54:1 (Agresti_f.Rd:14): Warning: missing </ul> before </div>
Cliff_dependent_compute_cov.html:46:1 (Cliff_dependent_compute_cov.Rd:10): Warning: missing </ul> before </div>
McCullagh_compute_df.html:50:1 (McCullagh_compute_df.Rd:12): Warning: missing </ul> before </div>
McCullagh_compute_lambda.html:51:1 (McCullagh_compute_lambda.Rd:13): Warning: missing </ul> before </div>
McCullagh_derivative_omega_wrt_psi.html:70:1 (McCullagh_derivative_omega_wrt_psi.Rd:22): Warning: missing </ul> before </div>
McCullagh_logits.html:51:1 (McCullagh_logits.Rd:13): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_kappa_2.html:59:1 (Schuster_second_deriv_log_l_wrt_kappa_2.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_kappa_v.html:59:1 (Schuster_second_deriv_log_l_wrt_kappa_v.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_marginal_pi_2.html:59:1 (Schuster_second_deriv_log_l_wrt_marginal_pi_2.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_marginal_pi_kappa.html:59:1 (Schuster_second_deriv_log_l_wrt_marginal_pi_kappa.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_marginal_pi_v.html:59:1 (Schuster_second_deriv_log_l_wrt_marginal_pi_v.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_v_2.html:59:1 (Schuster_second_deriv_log_l_wrt_v_2.Rd:17): Warning: missing </ul> before </div>
handle_untied_below_maximum.html:70:1 (handle_untied_below_maximum.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fadoua",
                      family = "Balabdaoui",
                      role = "aut"),
               person(given = "Kaspar",
                      family = "Rufibach",
                      role = c("aut", "cre"),
                      email = "kaspar.rufibach@gmail.com"),
               person(given = "Filippo",
                      family = "Santambrogio",
                      role = "aut"))
as necessary.
checkRd: (-1) minK.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) minK.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) minK.Rd:15: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ordAOV.Rd: LRTSim, RLRTSim, RLRsim, exactLRT, exactRLRT
  ordGene.Rd: LRTSim, RLRTSim
  ordSmooth.Rd: gam, mgcv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
sync.html:51:1 (sync.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Gabriel Okasa <okasa.gabriel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriel",
                      family = "Okasa",
                      role = c("aut", "cre"),
                      email = "okasa.gabriel@gmail.com"),
               person(given = "Michael",
                      family = "Lechner",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Lechner & Okasa (2019) <arXiv:1907.02436>. The Ordered Forest flexibly
  2017) <arXiv:1508.04409>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) orf.Rd:74: Lost braces
    74 | matrix of covariates \code{X} and a vector of outcomes 'code{Y} to the \code{orf}
       |                                                             ^
Found the following HTML validation problems:
check_X.html:46:1 (check_X.Rd:10): Warning: missing </ul> before </div>
check_newdata.html:50:1 (check_newdata.Rd:12): Warning: missing </ul> before </div>
get_honest_C.html:59:1 (get_honest_C.Rd:16): Warning: missing </ul> before </div>
get_weights_C.html:55:1 (get_weights_C.Rd:14): Warning: missing </ul> before </div>
margins_output.html:47:1 (margins_output.Rd:10): Warning: missing </ul> before </div>
margins_output_latex.html:47:1 (margins_output_latex.Rd:10): Warning: missing </ul> before </div>
pred_honest_C.html:59:1 (pred_honest_C.Rd:16): Warning: missing </ul> before </div>
pred_weights_C.html:59:1 (pred_weights_C.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_project_quarto_external_results.html:50:1 (create_project_quarto_external_results.Rd:12): Warning: missing </ul> before </div>
create_project_quarto_internal_results.html:50:1 (create_project_quarto_internal_results.Rd:12): Warning: missing </ul> before </div>
move_directory.html:54:1 (move_directory.Rd:14): Warning: missing </ul> before </div>
path.html:46:1 (path.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Yi Tang <yi.tang.uk@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "yi.tang.uk@me.com")
as necessary.
Maintainer: ‘Tianqing Liu <tianqingliu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianqing",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "tianqingliu@gmail.com"),
               person(given = "Nan",
                      family = "Lin",
                      role = "aut"),
               person(given = "Ningzhong",
                      family = "Shi",
                      role = "aut"),
               person(given = "Baoxue",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘cluster of fitted mean data.eps’ ‘cluster of fitted mean data.txt’
  ‘cluster of raw data.txt’
Maintainer: ‘Duncan Murdoch <murdoch.duncan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Murdoch",
                    role = c("aut", "cre"),
                    email = "murdoch.duncan@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
check_id_and_time.html:52:1 (check_id_and_time.Rd:14): Warning: missing </ul> before </div>
id_folds_to_folds.html:52:1 (id_folds_to_folds.Rd:13): Warning: missing </ul> before </div>
wrap_in_try.html:50:1 (wrap_in_try.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
zsum.html:46:1 (zsum.Rd:10): Warning: missing </ul> before </div>
zsumgra.html:46:1 (zsumgra.Rd:10): Warning: missing </ul> before </div>
zsummin.html:46:1 (zsummin.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Found the following HTML validation problems:
zsum.html:46:1 (zsum.Rd:11): Warning: missing </ul> before </div>
zsumgra.html:46:1 (zsumgra.Rd:11): Warning: missing </ul> before </div>
zsummin.html:46:1 (zsummin.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
oddstable.html:46:1 (oddstable.Rd:10): Warning: missing </ul> before </div>
oddstable_graph.html:68:1 (oddstable_graph.Rd:24): Warning: missing </ul> before </div>
orm_graph.html:80:1 (orm_graph.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brandon",
                    family = "Whitcher",
                    role = c("aut", "cre"),
                    email = "bwhitcher@gmail.com")
as necessary.
checkRd: (-1) hillEquation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:81-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:84-85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:86-87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:91-93: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
petWrapper.html:50:1 (petWrapper.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhu",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0002-0773-0052")
as necessary.
Found the following HTML validation problems:
KernelDist_cross.html:50:1 (KernelDist_cross.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Andrew Redd <andrew.redd@hsc.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Redd",
                    role = c("aut", "cre"),
                    email = "andrew.redd@hsc.utah.edu")
as necessary.
Found the following HTML validation problems:
p_rho.html:58:1 (p_rho.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Novomestky",
                    role = c("aut", "cre"),
                    email = "fnovomes@poly.edu")
as necessary.
checkRd: (-1) polynomial.derivatives.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fitS4.R’ ‘helpers.R’
checkRd: (-1) oscar.Rd:44: Lost braces; missing escapes or markup?
    44 | \item{print}{Level of verbosity in Fortran (may not be visible on all terminals); should be an integer between {range, range}, Default: 3}
       |                                                                                                                ^
checkRd: (-1) oscar.control.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{start}{Starting point generation method, see vignettes for details; should be an integer between {range,range}, Default: 2}
       |                                                                                                        ^
Maintainer: ‘Steffen Kriewald <kriewald@pik-potsdam.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steffen",
                      family = "Kriewald",
                      role = c("aut", "cre"),
                      email = "kriewald@pik-potsdam.de"),
               person(given = "Till",
                      family = "Fluschnik",
                      role = "aut"),
               person(given = "Dominik",
                      family = "Reusser",
                      role = "aut"),
               person(given = "Diego",
                      family = "Rybski",
                      role = "aut"))
as necessary.
Maintainer: ‘Olga Savchuk <olga.y.savchuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olga",
                    family = "Savchuk",
                    role = c("aut", "cre"),
                    email = "olga.y.savchuk@gmail.com")
as necessary.

The Description field contains
  functions, <arXiv:1703.05157>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sebastien Haneuse <shaneuse@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastien",
                      family = "Haneuse",
                      role = c("aut", "cre"),
                      email = "shaneuse@hsph.harvard.edu"),
               person(given = "Takumi",
                      family = "Saegusa",
                      role = "aut"),
               person(given = "Nilanjan",
                      family = "Chaterjee",
                      role = "aut"),
               person(given = "Norman",
                      family = "Breslow",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xavier Domingo-Almenara <xavier.domingo@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xavier",
                    family = "Domingo-Almenara",
                    role = c("aut", "cre"),
                    email = "xavier.domingo@urv.cat")
as necessary.
Maintainer: ‘Aaron Wolen <aaron@wolen.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
osf_refresh.html:47:1 (osf_refresh.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Brodie Gaslam <brodie.gaslam@yahoo.com>’

Found the following (possibly) invalid file URI:
  URI: ./Introduction.html
    From: inst/doc/nse-fun.html
Maintainer: ‘Xiaoyao Yin <yinxy1992@sina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaoyao",
                    family = "Yin",
                    role = c("aut", "cre"),
                    email = "yinxy1992@sina.com")
as necessary.
Found the following HTML validation problems:
osqpSettings.html:154:1 (osqpSettings.Rd:75): Warning: missing </ul> before </div>
Maintainer: ‘Adrian Staempfli <adrian.staempfli@ost.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Staempfli",
                      role = c("aut", "cre"),
                      email = "adrian.staempfli@ost.ch"),
               person(given = "Christoph",
                      family = "Strauss",
                      role = "aut"))
as necessary.
Maintainer: ‘Zardad Khan <zardadkhan@awkum.edu.pk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zardad",
                      family = "Khan",
                      role = c("aut", "cre"),
                      email = "zardadkhan@awkum.edu.pk"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Osama",
                      family = "Mahmoud",
                      role = "aut"),
               person(given = "Werner",
                      family = "Adler",
                      role = "aut"),
               person(family = "Miftahuddin",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcus Young <M.A.Young@soton.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) otp_create_surface.Rd:33: Lost braces; missing escapes or markup?
    33 | The file will be named surface_{id}.tiff, with {id} replaced by the OTP id assigned
       |                                ^
checkRd: (-1) otp_create_surface.Rd:33: Lost braces; missing escapes or markup?
    33 | The file will be named surface_{id}.tiff, with {id} replaced by the OTP id assigned
       |                                                ^
Found the following HTML validation problems:
otp_check_mode.html:46:1 (otp_check_mode.Rd:10): Warning: missing </ul> before </div>
otp_check_params.html:50:1 (otp_check_params.Rd:12): Warning: missing </ul> before </div>
otp_from_epoch.html:50:1 (otp_from_epoch.Rd:12): Warning: missing </ul> before </div>
otp_is_date.html:46:1 (otp_is_date.Rd:10): Warning: missing </ul> before </div>
otp_is_time.html:46:1 (otp_is_time.Rd:10): Warning: missing </ul> before </div>
otp_vector_match.html:50:1 (otp_vector_match.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) imput_cov.Rd:79: Lost braces
    79 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                     ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                                                   ^
checkRd: (-1) merge_dbs.Rd:179: Lost braces
   179 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^
Maintainer: ‘Pietro Coretto <pcoretto@unisa.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Junwen Xia <xiajunwen@ruc.edu.cn>’

The Description field contains
  available (Xia, J., Zhan, Z., Zhang, J. (2022) <arXiv:2210.05538>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
app_set_up.html:46:1 (app_set_up.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandra",
                    family = "Linz",
                    role = c("aut", "cre"),
                    email = "amlinz16@gmail.com")
as necessary.
Maintainer: ‘Finlay Campbell <finlaycampbell93@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Finlay Campbell <finlaycampbell93@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘zika_girardot_2015.Rd’:
    https://doi.org/10.2807/1560-7917.ES.2016.21.28.30283
Maintainer: ‘Rafael Pilliard Hellwig <rafael.taph@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) fmat.Rd:15: Lost braces; missing escapes or markup?
    15 | \item outcome: codes {I, P, R, NC, O, UH, UO, eUH, eUO, NE}
       |                      ^
checkRd: (-1) fmat.Rd:24: Lost braces; missing escapes or markup?
    24 | The input parameters given by the user are {I, P, R, NC, O, UH, UO} and
       |                                            ^
checkRd: (-1) fmat.Rd:25: Lost braces; missing escapes or markup?
    25 | the parameter 'e'. The parameter e is multiplied by {UH, UO} internally so as to
       |                                                     ^
checkRd: (-1) fmat.Rd:26: Lost braces; missing escapes or markup?
    26 | produce {eUH, eUO}.
       |         ^
checkRd: (-1) middleearth.Rd:14: Lost braces; missing escapes or markup?
    14 | \item \strong{code:} one of the outcome codes {I, P, R, NC, O, UH, UO, UH, UO, NE}
       |                                               ^
Found the following HTML validation problems:
validate_outliermbc_gmm.html:46:1 (validate_outliermbc_gmm.Rd:10): Warning: missing </ul> before </div>
validate_outliermbc_lcwm.html:46:1 (validate_outliermbc_lcwm.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Andres Missiego Manjon <andres.missiego@edu.uah.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andres", "Missiego"),
                      family = "Manjon",
                      role = c("aut", "cre"),
                      email = "andres.missiego@edu.uah.es"),
               person(given = c("Juan", "Jose", "Cuadrado"),
                      family = "Gallego",
                      role = "aut"))
as necessary.
Maintainer: ‘Antony Unwin <unwin@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antony",
                    family = "Unwin",
                    role = c("aut", "cre"),
                    email = "unwin@math.uni-augsburg.de")
as necessary.
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukasz",
                    family = "Komsta",
                    role = c("aut", "cre"),
                    email = "lukasz.komsta@umlub.pl")
as necessary.
Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
                      email = "jmbeauli@uark.edu"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
Found the following HTML validation problems:
config_extensions.html:46:1 (config_extensions.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
generate_contrast.html:64:1 (generate_contrast.Rd:24): Warning: missing </ul> before </div>
phi.html:50:1 (phi.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘owid.R’
Found the following HTML validation problems:
find_cities_by_bbox.html:52:1 (find_cities_by_bbox.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calcurve_plot.html:63:1 (calcurve_plot.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
OX_default.html:77:1 (OX_default.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Kevin", "C."),
                      family = "Johnson",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
oz-states.html:52:1 (oz-states.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
suppresser.html:46:1 (suppresser.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.package.html:55:1 (as.package.Rd:10): Warning: missing </ul> before </div>
update_deps.html:51:1 (update_deps.Rd:10): Warning: missing </ul> before </div>
use_directory.html:57:1 (use_directory.Rd:15): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes
Found the following HTML validation problems:
add_plugin_clean.html:59:1 (add_plugin_clean.Rd:16): Warning: missing </ul> before </div>
add_plugin_html.html:54:1 (add_plugin_html.Rd:14): Warning: missing </ul> before </div>
ease_lit.html:46:1 (ease_lit.Rd:10): Warning: missing </ul> before </div>
jsdoc.html:54:1 (jsdoc.Rd:16): Warning: missing </ul> before </div>
mockup.html:54:1 (mockup.Rd:23): Warning: missing </ul> before </div>
npm_run.html:46:1 (npm_run.Rd:10): Warning: missing </ul> before </div>
npx.html:46:1 (npx.Rd:10): Warning: missing </ul> before </div>
set_npm.html:49:1 (set_npm.Rd:10): Warning: missing </ul> before </div>
set_yarn.html:49:1 (set_yarn.Rd:10): Warning: missing </ul> before </div>
use_loader_file.html:47:1 (use_loader_file.Rd:10): Warning: missing </ul> before </div>
use_loader_pug.html:46:1 (use_loader_pug.Rd:10): Warning: missing </ul> before </div>
use_loader_svelte.html:46:1 (use_loader_svelte.Rd:10): Warning: missing </ul> before </div>
use_loader_ts.html:46:1 (use_loader_ts.Rd:10): Warning: missing </ul> before </div>
use_tailwind.html:47:1 (use_tailwind.Rd:10): Warning: missing </ul> before </div>
yarn_run.html:46:1 (yarn_run.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Marion Brandolini-Bunlon <marion.brandolini-bunlon@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marion",
                      family = "Brandolini-Bunlon",
                      role = c("aut", "cre"),
                      email = "marion.brandolini-bunlon@inra.fr"),
               person(given = "Stephanie",
                      family = "Bougeard",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Petera",
                      role = "aut"),
               person(given = "Estelle",
                      family = "Pujos-Guillot",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ginv.html:56:1 (ginv.Rd:22): Warning: missing </ul> before </div>
inertie.html:50:1 (inertie.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
install_local.html:59:1 (install_local.Rd:16): Warning: missing </ul> before </div>
packrat-mode.html:83:1 (packrat-mode.Rd:40): Warning: missing </ul> before </div>
repos_create.html:56:1 (repos_create.Rd:15): Warning: missing </ul> before </div>
repos_upload.html:59:1 (repos_upload.Rd:19): Warning: missing </ul> before </div>
snapshotImpl.html:125:1 (snapshotImpl.Rd:66): Warning: missing </ul> before </div>
unbundle.html:59:1 (unbundle.Rd:17): Warning: missing </ul> before </div>
unused_packages.html:51:1 (unused_packages.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
p_set_cranrepo.html:46:1 (p_set_cranrepo.Rd:10): Warning: missing </ul> before </div>
print.p_version_diff.html:51:1 (print.p_version_diff.Rd:12): Warning: missing </ul> before </div>
print.search_any.html:51:1 (print.search_any.Rd:12): Warning: missing </ul> before </div>
print.wide_table.html:55:1 (print.wide_table.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Matthew Hutchinson <matthewhutchinson15@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Antonio"),
                      family = "Balbuena",
                      role = "aut",
                      email = "j.a.balbuena@uv.es"),
               person(given = "Timothee",
                      family = "Poisot",
                      role = "aut",
                      email = "tim@poisotlab.io"),
               person(given = "Matthew",
                      family = "Hutchinson",
                      role = c("aut", "cre"),
                      email = "matthewhutchinson15@gmail.com"),
               person(given = c("Fernando", "Cagua;", "see", "PLoS", "ONE", "Balbuena", "et", "al", "2013"),
                      family = "<https://doi.org/10.1371/journal.pone.0061048>",
                      role = "aut",
                      email = "https://doi.org/10.1371/journal.pone.0061048"))
as necessary.
checkRd: (-1) residuals_paco.Rd:10: Escaped LaTeX specials: \$
Maintainer: ‘Ye Henry Li <hlowl2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ye", "Henry"),
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "hlowl2@gmail.com"),
               person(given = "Dangna",
                      family = "Li",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
MINetworkPlot_topEdges.html:50:1 (MINetworkPlot_topEdges.Rd:12): Warning: missing </ul> before </div>
MINetwork_simplified_topEdges.html:50:1 (MINetwork_simplified_topEdges.Rd:12): Warning: missing </ul> before </div>
constellationPlot.html:71:1 (constellationPlot.Rd:23): Warning: missing </ul> before </div>
getRepresentativeNetworks.html:59:1 (getRepresentativeNetworks.Rd:17): Warning: missing </ul> before </div>
outputNetworks_topEdges_matrix.html:54:1 (outputNetworks_topEdges_matrix.Rd:14): Warning: missing </ul> before </div>
outputRepresentativeNetworks_topEdges.html:55:1 (outputRepresentativeNetworks_topEdges.Rd:15): Warning: missing </ul> before </div>
refineSubpopulationLabels.html:59:1 (refineSubpopulationLabels.Rd:17): Warning: missing </ul> before </div>
runElbowPointAnalysis.html:71:1 (runElbowPointAnalysis.Rd:23): Warning: missing </ul> before </div>
samplePass.html:67:1 (samplePass.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
available_packages.html:46:1 (available_packages.Rd:10): Warning: missing </ul> before </div>
read_cran_file.html:58:1 (read_cran_file.Rd:16): Warning: missing </ul> before </div>
standard_args.html:174:1 (standard_args.Rd:83): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:324:1 (inst/NEWS.Rd:156): Warning: missing </ul> before </div>
NEWS.html:67:1 (inst/NEWS.Rd:30): Warning: <h4> anchor "Changed" already defined
NEWS.html:90:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "Changed" already defined
NEWS.html:114:1 (inst/NEWS.Rd:53): Warning: <h4> anchor "Changed" already defined
NEWS.html:132:1 (inst/NEWS.Rd:62): Warning: <h4> anchor "Fixed" already defined
NEWS.html:147:1 (inst/NEWS.Rd:70): Warning: <h4> anchor "Changed" already defined
NEWS.html:180:1 (inst/NEWS.Rd:86): Warning: <h4> anchor "Changed" already defined
NEWS.html:195:1 (inst/NEWS.Rd:94): Warning: <h4> anchor "Added" already defined
NEWS.html:206:1 (inst/NEWS.Rd:99): Warning: <h4> anchor "Changed" already defined
NEWS.html:224:1 (inst/NEWS.Rd:108): Warning: <h4> anchor "Changed" already defined
NEWS.html:289:1 (inst/NEWS.Rd:142): Warning: <h4> anchor "Updates" already defined
NEWS.html:310:1 (inst/NEWS.Rd:152): Warning: <h4> anchor "Added" already defined
Maintainer: ‘Marina Evangelou <m.evangelou@ic.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marina",
                    family = "Evangelou",
                    role = c("aut", "cre"),
                    email = "m.evangelou@ic.ac.uk")
as necessary.
Maintainer: ‘Steve Haroz <painbow@steveharoz.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steve",
                    family = "Haroz",
                    role = c("aut", "cre"),
                    email = "painbow@steveharoz.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/steveharoz/painbow/issues/new
which should likely be
  https://github.com/steveharoz/painbow/issues/new/issues
instead.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Stephane Champely <champely@univ-lyon1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephane",
                    family = "Champely",
                    role = c("aut", "cre"),
                    email = "champely@univ-lyon1.fr")
as necessary.
Found the following HTML validation problems:
pairsD3Output.html:54:1 (pairsD3Output.Rd:14): Warning: missing </ul> before </div>
renderPairsD3.html:54:1 (renderPairsD3.Rd:14): Warning: missing </ul> before </div>
savePairs.html:59:1 (savePairs.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Catherine Hurley <catherine.hurley@mu.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "C.B.",
                      family = "Hurley",
                      role = "aut"),
               person(given = "R.W.",
                      family = "Oldford",
                      role = "aut"),
               person(given = "Catherine",
                      family = "Hurley",
                      role = "cre",
                      email = "catherine.hurley@mu.ie"))
as necessary.
'library' or 'require' calls not declared from:
  ‘gclus’ ‘irr’ ‘seriation’
Found the following HTML validation problems:
path_cor.html:50:1 (path_cor.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.pairwiseCI.html:55:1 (print.pairwiseCI.Rd:16): Warning: missing </ul> before </div>
print.pairwiseTest.html:55:1 (print.pairwiseTest.Rd:13): Warning: missing </ul> before </div>
print.summary.pairwiseCI.html:51:1 (print.summary.pairwiseCI.Rd:13): Warning: missing </ul> before </div>
print.summary.pairwiseTest.html:51:1 (print.summary.pairwiseTest.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
logLik.pers.html:59:1 (logLik.pers.Rd:16): Warning: missing </ul> before </div>
lrtest.pers.html:50:1 (lrtest.pers.Rd:12): Warning: missing </ul> before </div>
plot.grm.html:124:1 (plot.grm.Rd:57): Warning: missing </ul> before </div>
plot.pair.html:104:1 (plot.pair.Rd:45): Warning: missing </ul> before </div>
plot.pairSE.html:114:1 (plot.pairSE.Rd:51): Warning: missing </ul> before </div>
plot.pers.html:109:1 (plot.pers.Rd:48): Warning: missing </ul> before </div>
plot.rfa.html:104:1 (plot.rfa.Rd:45): Warning: missing </ul> before </div>
residuals.pers.html:59:1 (residuals.pers.Rd:16): Warning: missing </ul> before </div>
summary.grm.html:55:1 (summary.grm.Rd:14): Warning: missing </ul> before </div>
summary.pair.html:55:1 (summary.pair.Rd:14): Warning: missing </ul> before </div>
summary.pairS.html:55:1 (summary.pairS.Rd:14): Warning: missing </ul> before </div>
summary.pairSE.html:55:1 (summary.pairSE.Rd:14): Warning: missing </ul> before </div>
summary.pairwiseSepRel.html:51:1 (summary.pairwiseSepRel.Rd:12): Warning: missing </ul> before </div>
summary.pers.html:59:1 (summary.pers.Rd:16): Warning: missing </ul> before </div>
summary.q3.html:55:1 (summary.q3.Rd:14): Warning: missing </ul> before </div>
summary.rfa.html:55:1 (summary.rfa.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) MICS2014Ch.Rd:296: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Ch.Rd:297: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:214: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:215: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:109: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:110: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:336: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:337: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018bh.Rd:88: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018bh.Rd:89: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018fs.Rd:308: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018fs.Rd:309: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:362: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:363: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:70: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:243: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:244: Lost braces in \enumerate; meant \describe ?
Found the following HTML validation problems:
faq.html:192:1 (faq.Rd:163): Warning: missing </ul> before </div>
features.html:207:1 (features.Rd:122): Warning: missing </ul> before </div>
get-started.html:867:1 (get-started.Rd:826): Warning: missing </ul> before </div>
install.html:172:1 (install.Rd:97): Warning: missing </ul> before </div>
package-dependency-types.html:131:1 (package-dependency-types.Rd:10): Warning: missing </ul> before </div>
pak-config.html:246:1 (pak-config.Rd:52): Warning: missing </ul> before </div>
pak_package_sources.html:708:1 (pak_package_sources.Rd:15): Warning: missing </ul> before </div>
sysreqs.html:715:1 (sysreqs.Rd:676): Warning: missing </ul> before </div>
Found the following HTML validation problems:
lat_bins.html:74:1 (lat_bins.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
arguments.html:119:1 (arguments.Rd:60): Warning: missing </ul> before </div>
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "timcdlucas@gmail.com"),
               person(given = "Anjali",
                      family = "Goswami",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
PaleoPopModel.html:219:1 (PaleoPopModel.Rd:177): Warning: <h5> anchor "Usage" already defined
PaleoPopModel.html:225:1 (PaleoPopModel.Rd:181): Warning: <h5> anchor "Returns" already defined
PaleoPopModel.html:242:1 (PaleoPopModel.Rd:190): Warning: <h5> anchor "Usage" already defined
PaleoPopModel.html:248:1 (PaleoPopModel.Rd:194): Warning: <h5> anchor "Arguments" already defined
PaleoRegion.html:146:1 (PaleoRegion.Rd:104): Warning: <h5> anchor "Usage" already defined
PaleoRegion.html:152:1 (PaleoRegion.Rd:108): Warning: <h5> anchor "Arguments" already defined
PaleoRegion.html:182:1 (PaleoRegion.Rd:124): Warning: <h5> anchor "Usage" already defined
PaleoRegion.html:188:1 (PaleoRegion.Rd:128): Warning: <h5> anchor "Returns" already defined
PaleoRegion.html:205:1 (PaleoRegion.Rd:137): Warning: <h5> anchor "Usage" already defined
PaleoRegion.html:211:1 (PaleoRegion.Rd:141): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘David W. Bapst <dwbapst@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "W."),
                      family = "Bapst",
                      role = c("aut", "cre"),
                      email = "dwbapst@gmail.com"),
               person(given = c("Peter", "J."),
                      family = "Wagner",
                      role = "aut"))
as necessary.
Maintainer: ‘Emil Hvitfeldt <emilhhvitfeldt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "AUTHORS"),
                      family = "file.",
                      role = "aut"),
               person(given = "Emil",
                      family = "Hvitfeldt",
                      role = "cre",
                      email = "emilhhvitfeldt@gmail.com"))
as necessary.
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Lucas",
                    role = c("aut", "cre"),
                    email = "timcdlucas@gmail.com")
as necessary.
Maintainer: ‘Allison Horst <ahorst@ucsb.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
coef.palm.html:66:1 (coef.palm.Rd:21): Warning: missing </ul> before </div>
summary.palm.html:51:1 (summary.palm.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Heidi Seibold <heidi@seibold.co>’

The Description field contains
  found in Seibold, Hothorn, Zeileis (2016) <arXiv:1612.07498>. The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiaoyan Wang<xywang@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "xywang@ucla.edu"),
               person(given = "Gang",
                      family = "Li",
                      role = "aut"))
as necessary.

The Description field contains
  to Gang Li and Xiaoyan Wang (2016) <arXiv:1611.03063> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
is.AcousticEvent.html:46:1 (is.AcousticEvent.Rd:10): Warning: missing </ul> before </div>
is.AcousticStudy.html:46:1 (is.AcousticStudy.Rd:10): Warning: missing </ul> before </div>
is.PAMpalSettings.html:46:1 (is.PAMpalSettings.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joseph G Kreke <jkreke2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "G"),
                      family = "Kreke",
                      role = c("aut", "cre"),
                      email = "jkreke2@gmail.com"),
               person(given = "PhD;",
                      family = "Harris",
                      role = "aut"),
               person(given = c("Inc.", "Sangeet"),
                      family = "Khemlani",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research", "Laboratory.", "Greg"),
                      family = "Trafton",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research"),
                      family = "Laboratory.",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
Citation.html:74:1 (Citation.Rd:28): Warning: missing </ul> before </div>
ListAttributes.html:61:1 (ListAttributes.Rd:21): Warning: missing </ul> before </div>
filter.html:58:1 (filter.Rd:16): Warning: missing </ul> before </div>
set_pandoc_path.html:47:1 (set_pandoc_path.Rd:11): Warning: missing </ul> before </div>
utility_functions.html:65:1 (utility_functions.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Jing Peng <jing.peng@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jing",
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "jing.peng@uconn.edu")
as necessary.
Found the following HTML validation problems:
distances.html:48:1 (distances.Rd:11): Warning: missing </ul> before </div>
estimates.html:52:1 (estimates.Rd:13): Warning: missing </ul> before </div>
extract.html:50:1 (extract.Rd:12): Warning: missing </ul> before </div>
get_unrefined_balance.html:46:1 (get_unrefined_balance.Rd:10): Warning: missing </ul> before </div>
plot_matched_set.html:93:1 (plot_matched_set.Rd:39): Warning: missing </ul> before </div>
sub-.matched.set.html:59:1 (sub-.matched.set.Rd:16): Warning: missing </ul> before </div>
weights.html:48:1 (weights.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-modifyOther.html:58:1 (dot-modifyOther.Rd:16): Warning: missing </ul> before </div>
dot-modifySelf.html:58:1 (dot-modifySelf.Rd:16): Warning: missing </ul> before </div>
pfilterd-setter.html:78:1 (pfilterd-setter.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Jacob A. Long <jacob.long@sc.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/jacob-long/panelr
which should likely be
  https://github.com/jacob-long/panelr/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_panels.R’ ‘clean_raw.Rd’ ‘create_means.R’ ‘helper_functions.R’
    ‘panelsummary.R’ ‘panelsummary_raw.R’
checkRd: (-1) panelsummary.Rd:112: Lost braces; missing escapes or markup?
   112 | \item `"{exp(estimate) * std.error}"
       |         ^
checkRd: (-1) panelsummary_raw.Rd:90: Lost braces; missing escapes or markup?
    90 | \item `"{exp(estimate) * std.error}"
       |         ^
Found the following HTML validation problems:
add_panels.html:83:1 (add_panels.Rd:33): Warning: missing </ul> before </div>
add_panels_cfe.html:88:1 (add_panels_cfe.Rd:36): Warning: missing </ul> before </div>
check_dimensions_match.html:50:1 (check_dimensions_match.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.pvarfeols.html:51:1 (coef.pvarfeols.Rd:12): Warning: missing </ul> before </div>
coef.pvarhk.html:51:1 (coef.pvarhk.Rd:12): Warning: missing </ul> before </div>
knit_print.pvarfeols.html:51:1 (knit_print.pvarfeols.Rd:12): Warning: missing </ul> before </div>
knit_print.pvargmm.html:51:1 (knit_print.pvargmm.Rd:12): Warning: missing </ul> before </div>
knit_print.pvarhk.html:51:1 (knit_print.pvarhk.Rd:12): Warning: missing </ul> before </div>
knit_print.summary.pvarfeols.html:51:1 (knit_print.summary.pvarfeols.Rd:12): Warning: missing </ul> before </div>
knit_print.summary.pvargmm.html:51:1 (knit_print.summary.pvargmm.Rd:12): Warning: missing </ul> before </div>
knit_print.summary.pvarhk.html:51:1 (knit_print.summary.pvarhk.Rd:12): Warning: missing </ul> before </div>
plot.pvarstability.html:51:1 (plot.pvarstability.Rd:12): Warning: missing </ul> before </div>
print.pvarfeols.html:51:1 (print.pvarfeols.Rd:12): Warning: missing </ul> before </div>
print.pvargmm.html:51:1 (print.pvargmm.Rd:12): Warning: missing </ul> before </div>
print.pvarhk.html:51:1 (print.pvarhk.Rd:12): Warning: missing </ul> before </div>
print.pvarstability.html:51:1 (print.pvarstability.Rd:12): Warning: missing </ul> before </div>
print.summary.pvarfeols.html:51:1 (print.summary.pvarfeols.Rd:12): Warning: missing </ul> before </div>
print.summary.pvargmm.html:51:1 (print.summary.pvargmm.Rd:12): Warning: missing </ul> before </div>
print.summary.pvarhk.html:51:1 (print.summary.pvarhk.Rd:12): Warning: missing </ul> before </div>
summary.pvarfeols.html:51:1 (summary.pvarfeols.Rd:12): Warning: missing </ul> before </div>
summary.pvargmm.html:51:1 (summary.pvargmm.Rd:12): Warning: missing </ul> before </div>
summary.pvarhk.html:51:1 (summary.pvarhk.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pg_cache_clear-defunct.html:46:1 (pg_cache_clear-defunct.Rd:10): Warning: missing </ul> before </div>
pg_cache_list-defunct.html:46:1 (pg_cache_list-defunct.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Cathrine Ulla Jensen <cuj@ifro.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toke", "Emil"),
                      family = "Panduro",
                      role = "aut",
                      email = "tepp@ifro.ku.dk"),
               person(given = c("Cathrine", "Ulla"),
                      family = "Jensen",
                      role = c("aut", "cre"),
                      email = "cuj@ifro.ku.dk"))
as necessary.
checkRd: (-1) hvidovre.Rd:11: Lost braces
    11 |     \item{\code{roof_tile}}{a numeric vector, roof_tile}{dummy, roof made out of tiles =1}
       |                                                         ^
checkRd: (-1) hvidovre.Rd:25: Lost braces
    25 |     \item{\code{railways}}{a numeric vector, railways}{distance to nearest railway in meters}
       |                                                       ^
checkRd: (-1) hvidovre.Rd:26: Lost braces
    26 |     \item{\code{nature_SLD}}{a numeric vector, nature_SLD}{distance to nearest nature area in meters}
       |                                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_control_form.R’ ‘mod_leaflet_map.R’
Found the following HTML validation problems:
gsPEN_cpp.html:88:1 (gsPEN_cpp.Rd:36): Warning: missing </ul> before </div>
gsPEN_sparse_cpp.html:88:1 (gsPEN_sparse_cpp.Rd:36): Warning: missing </ul> before </div>
gsfPEN_cpp.html:113:1 (gsfPEN_cpp.Rd:51): Warning: missing </ul> before </div>
gsfPEN_sparse_cpp.html:113:1 (gsfPEN_sparse_cpp.Rd:51): Warning: missing </ul> before </div>
Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "Joseph", "L."),
                      family = "Schafer",
                      role = "aut"),
               person(given = c("Jing", "hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Found the following HTML validation problems:
checklegal.html:50:1 (checklegal.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_effect_sizes.html:63:1 (add_effect_sizes.Rd:20): Warning: missing </ul> before </div>
apa_factorial_plot_single.html:74:1 (apa_factorial_plot_single.Rd:28): Warning: missing </ul> before </div>
beautify.html:56:1 (beautify.Rd:14): Warning: missing </ul> before </div>
canonize.html:55:1 (canonize.Rd:14): Warning: missing </ul> before </div>
corresponding_author_line.html:46:1 (corresponding_author_line.Rd:10): Warning: missing </ul> before </div>
defaults.html:54:1 (defaults.Rd:14): Warning: missing </ul> before </div>
escape_latex.html:55:1 (escape_latex.Rd:14): Warning: missing </ul> before </div>
fast_aggregate.html:60:1 (fast_aggregate.Rd:17): Warning: missing </ul> before </div>
hd_int.html:50:1 (hd_int.Rd:12): Warning: missing </ul> before </div>
localize.html:48:1 (localize.Rd:10): Warning: missing </ul> before </div>
print_scientific.html:46:1 (print_scientific.Rd:10): Warning: missing </ul> before </div>
sel.html:52:1 (sel.Rd:12): Warning: missing </ul> before </div>
sort_columns.html:47:1 (sort_columns.Rd:10): Warning: missing </ul> before </div>
strip_math_tags.html:50:1 (strip_math_tags.Rd:13): Warning: missing </ul> before </div>
validate.html:99:1 (validate.Rd:42): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:66:1 (inst/NEWS.Rd:24): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:82:1 (inst/NEWS.Rd:32): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:104:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:124:1 (inst/NEWS.Rd:52): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:135:1 (inst/NEWS.Rd:57): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:181:1 (inst/NEWS.Rd:79): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:199:1 (inst/NEWS.Rd:87): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:223:1 (inst/NEWS.Rd:101): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:242:1 (inst/NEWS.Rd:110): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:258:1 (inst/NEWS.Rd:120): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:274:1 (inst/NEWS.Rd:128): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:290:1 (inst/NEWS.Rd:137): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:320:1 (inst/NEWS.Rd:150): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:344:1 (inst/NEWS.Rd:160): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:370:1 (inst/NEWS.Rd:172): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:386:1 (inst/NEWS.Rd:180): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:402:1 (inst/NEWS.Rd:188): Warning: <h4> anchor "Bug-fixes" already defined
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
clusterRequire.html:50:1 (clusterRequire.Rd:12): Warning: missing </ul> before </div>
excludeFromList.html:50:1 (excludeFromList.Rd:12): Warning: missing </ul> before </div>
layoutEmail.html:51:1 (layoutEmail.Rd:12): Warning: missing </ul> before </div>
layoutErrorReport.html:52:1 (layoutErrorReport.Rd:12): Warning: missing </ul> before </div>
layoutParallel.html:51:1 (layoutParallel.Rd:12): Warning: missing </ul> before </div>
layoutSimple.html:50:1 (layoutSimple.Rd:12): Warning: missing </ul> before </div>
layoutStackTrace.html:50:1 (layoutStackTrace.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Erin Conlon <econlon@umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Miroshnikov",
                      role = "aut"),
               person(given = "Erin",
                      family = "Conlon",
                      role = c("aut", "cre"),
                      email = "econlon@umass.edu"))
as necessary.
Maintainer: ‘Thuc Duy Le <Thuc.Le@unisa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thuc", "Duy"),
                      family = "Le",
                      role = c("aut", "cre"),
                      email = "thuc.le@unisa.edu.au"),
               person(given = "Tao",
                      family = "Hoang",
                      role = "aut"),
               person(given = "Shu",
                      family = "Hu",
                      role = "aut"),
               person(given = "Liang",
                      family = "Zhang",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
predict.parameters_clusters.html:59:1 (predict.parameters_clusters.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
spectemp.html:70:1 (spectemp.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plotOptPath.html:110:1 (plotOptPath.Rd:58): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fix_column_names.html:50:1 (fix_column_names.Rd:12): Warning: missing </ul> before </div>
parse_opts.html:50:1 (parse_opts.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Samuel Wilson <samwilson303@gmail.com>’

The Description field contains
  al. <arXiv:1206.2944>.  The package allows the user to run scoring
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) returns.Rd:21: Lost braces; missing escapes or markup?
    21 |   \item{...}{Other options including {type} which refers to the
       |                                      ^
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"),
               person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) PPS.fit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forbes400.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forbes400.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:11: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
print.PGP_Model.html:51:1 (print.PGP_Model.Rd:12): Warning: missing </ul> before </div>
print.PPP_Model.html:51:1 (print.PPP_Model.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/parglm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexios Galanos <alexios@4dscape.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.LaTeX2item.html:58:1 (print.LaTeX2item.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rmd_chunk.html:73:1 (rmd_chunk.Rd:27): Warning: missing </ul> before </div>
rmd_code_block.html:73:1 (rmd_code_block.Rd:27): Warning: missing </ul> before </div>
rmd_code_block_literal.html:63:1 (rmd_code_block_literal.Rd:21): Warning: missing </ul> before </div>
rmd_fenced_div_open.html:58:1 (rmd_fenced_div_open.Rd:18): Warning: missing </ul> before </div>
rmd_heading.html:50:1 (rmd_heading.Rd:12): Warning: missing </ul> before </div>
rmd_inline_code.html:68:1 (rmd_inline_code.Rd:24): Warning: missing </ul> before </div>
rmd_markdown.html:46:1 (rmd_markdown.Rd:10): Warning: missing </ul> before </div>
rmd_raw_chunk.html:63:1 (rmd_raw_chunk.Rd:21): Warning: missing </ul> before </div>
rmd_shortcode.html:63:1 (rmd_shortcode.Rd:21): Warning: missing </ul> before </div>
rmd_span.html:63:1 (rmd_span.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Maintainer: ‘Marcela Nunez Lemus <marcela.nunez.lemus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marcela", "Nunez"),
                      family = "Lemus",
                      role = c("aut", "cre"),
                      email = "marcela.nunez.lemus@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Larissa", "Avila"),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H"),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘Annette Molinaro <annette.molinaro@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annette",
                      family = "Molinaro",
                      role = c("aut", "cre"),
                      email = "annette.molinaro@ucsf.edu"),
               person(given = "Adam",
                      family = "Olshen",
                      role = "aut",
                      email = "olshena@biostat.ucsf.edu"),
               person(given = "Karen",
                      family = "Lostritto",
                      role = "aut",
                      email = "karen.lostritto@yale.edu"),
               person(given = "Gregory",
                      family = "Ryslik",
                      role = "aut",
                      email = "gregory.ryslik@yale.edu"),
               person(given = "Steve",
                      family = "Weston",
                      role = "aut",
                      email = "stephen.weston@yale.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
dumpDSA.html:51:1 (dumpDSA.Rd:13): Warning: missing </ul> before </div>
predict.partDSA.html:56:1 (predict.partDSA.Rd:14): Warning: missing </ul> before </div>
print.partDSA.html:57:1 (print.partDSA.Rd:18): Warning: missing </ul> before </div>
trim.html:59:1 (trim.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Ben Derrick <ben.derrick@uwe.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Derrick",
                    role = c("aut", "cre"),
                    email = "ben.derrick@uwe.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘evolve.Rd’ ‘genesis.Rd’ ‘simulate.Rd’ ‘wield.Rd’
Maintainer: ‘Adam Clark <adam.tclark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "adam.tclark@gmail.com")
as necessary.
Maintainer: ‘David Weisman <David.Weisman@acm.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Weisman",
                      role = c("aut", "cre"),
                      email = "david.weisman@acm.org"),
               person(given = "Dan",
                      family = "Simovici",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
hits.html:48:1 (hits.Rd:13): Warning: missing </ul> before </div>
print_color.html:52:1 (print_color.Rd:19): Warning: missing </ul> before </div>
print_helpers.html:68:1 (print_helpers.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("cre", "aut"),
                      email = "normmatloff@gmail.com"),
               person(given = "Clark",
                      family = "Fitzgerald",
                      role = "aut",
                      email = "clarkfitzg@gmail.com"),
               person(given = c("with", "contributions", "by", "Alex"),
                      family = "Rumbaugh",
                      email = "aprumbaugh@ucdavis.edu"),
               person(given = "Hadley",
                      family = "Wickham",
                      email = "h.wickham@gmail.com"))
as necessary.
Found the following files/directories:
  ‘co2’ ‘co2.1’ ‘co2.2’ ‘co2s.1’ ‘co2s.2’ ‘ctm.1’ ‘ctm.2’ ‘m’ ‘m.1’
  ‘m.2’ ‘test’ ‘test.1’ ‘test.2’ ‘testa.1’ ‘testa.2’ ‘xfile.1’
  ‘xfile.2’
Found the following HTML validation problems:
forestplot.html:69:1 (forestplot.Rd:25): Warning: missing </ul> before </div>
get_ran_var.html:53:1 (get_ran_var.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-i.html:54:1 (dot-i.Rd:14): Warning: missing </ul> before </div>
extract.html:61:1 (extract.Rd:18): Warning: missing </ul> before </div>
format_field_matrix.html:61:1 (format_field_matrix.Rd:21): Warning: missing </ul> before </div>
parttime_logical.html:49:1 (parttime_logical.Rd:12): Warning: missing </ul> before </div>
trim.html:50:1 (trim.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Maintainer: ‘Yukun Zhang <yukzhang@ucalgary.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yukun",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "yukzhang@ucalgary.ca"),
               person(given = "Milad",
                      family = "Yavari",
                      role = "aut"),
               person(given = "Bob",
                      family = "Haennel",
                      role = "aut"),
               person(given = "Haocheng",
                      family = "Li",
                      role = c("aut", "ctb")))
as necessary.
Maintainer: ‘Zhiqiu Hu <zhiqiu.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhiqiu", "Hu;", "Shizhong", "Xu;", "Zhiquan", "Wang;", "Rongcai"),
                      family = "Yang",
                      role = "aut"),
               person(given = "Zhiqiu",
                      family = "Hu",
                      role = "cre",
                      email = "zhiqiu.hu@gmail.com"))
as necessary.
checkRd: (-1) PAS-package.Rd:30: Lost braces
    30 |     {\code{bin model}}{\cr Zhiqiu Hu, Zhiquan Wang, and Shizhong Xu (2012) An infinitesimal model for quantitative trait genomic value prediction. PloS ONE 7: e41336.}
       |                       ^
Maintainer: ‘Marco Chak Yan YU <marcocyyu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marco", "Chak", "Yan"),
                    family = "YU",
                    role = c("aut", "cre"),
                    email = "marcocyyu@gmail.com")
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Emmanuel Charpentier <emm.charpentier@free.fr>’

Found the following (possibly) invalid file URI:
  URI: emm.charpentier@free.fr
    From: man/patchSynctex-package.Rd
Found the following HTML validation problems:
create_HTML_report.html:70:1 (create_HTML_report.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Steven Andrew Culpepper <sculpepp@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
pmmFit.html:53:1 (pmmFit.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mockDisconnect.html:46:1 (mockDisconnect.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Seong Hyun Hwang <krshh1412@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seong", "Hyun"),
                      family = "Hwang",
                      role = c("aut", "cre"),
                      email = "krshh1412@gmail.com"),
               person(given = c("Rachel", "Myoung"),
                      family = "Moon",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
print.summary.pc_params.html:51:1 (print.summary.pc_params.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) plotHeat.Rd:113: Lost braces
   113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
       |     ^
Found the following HTML validation problems:
createPhenotype.html:170:1 (createPhenotype.Rd:90): Warning: missing </ul> before </div>
plotRasterstackAsImage.html:50:1 (plotRasterstackAsImage.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Chunqiao Luo <chunqiaoluo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
equivalent_at.html:56:1 (equivalent_at.Rd:19): Warning: missing </ul> before </div>
get_ree_internal.html:124:1 (get_ree_internal.Rd:73): Warning: missing </ul> before </div>
metabolic_row_wise.html:59:1 (metabolic_row_wise.Rd:23): Warning: missing </ul> before </div>
paired_equivalence_wrapper.html:94:1 (paired_equivalence_wrapper.Rd:42): Warning: missing </ul> before </div>
reconstruct_transitions.html:49:1 (reconstruct_transitions.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.list.struct.html:51:1 (as.list.struct.Rd:12): Warning: missing </ul> before </div>
merge_config.html:50:1 (merge_config.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dyfan Jones <dyfan.r.jones@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.aws.amazon.com/connect/latest/adminguide/historical-metrics-definitions.html##average-non-talk-time-historical
    From: man/connect_get_metric_data_v2.Rd
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Dyfan Jones <dyfan.r.jones@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.aws.amazon.com/kms/latest/developerguide/concepts.html##aws-managed-cmk
    From: man/kms_describe_key.Rd
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Hoffmann",
                      role = c("aut", "cre"),
                      email = "tjhoffm@gmail.com"),
               person(given = c("with", "contributions", "from", "Christoph"),
                      family = "Lange",
                      role = "aut",
                      email = "clange@hsph.harvard.edu"))
as necessary.
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Rampal", "S."),
                    family = "Etienne",
                    role = c("aut", "cre"),
                    email = "r.s.etienne@rug.nl")
as necessary.
checkRd: (-1) pbd_loglik.Rd:31: Lost braces
    31 |     \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:32: Lost braces
    32 |     \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:33: Lost braces
    33 |     \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:34: Lost braces
    34 |     \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:35: Lost braces
    35 |     \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:36: Lost braces
    36 |     \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
       |                    ^
checkRd: (-1) pbd_loglik.Rd:37: Lost braces
    37 |     \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}  
       |                    ^
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaodong",
                      family = "Luo",
                      role = "aut"),
               person(given = "Bo",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu",
                      comment = c(ORCID = "0000-0002-5893-0169")))
as necessary.
Maintainer: ‘Brenton Kenkel <brenton.kenkel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fortran", "code", "by", "Alan", "Genz.", "R", "code", "by", "Brenton"),
                      family = "Kenkel",
                      role = "aut"),
               person(given = c("based", "on", "Adelchi", "Azzalini's", "'mnormt'"),
                      family = "package.",
                      role = "aut"),
               person(given = "Brenton",
                      family = "Kenkel",
                      role = "cre",
                      email = "brenton.kenkel@gmail.com"))
as necessary.
Found the following HTML validation problems:
any_modcomp.html:56:1 (any_modcomp.Rd:22): Warning: missing </ul> before </div>
x2__modcomp.html:95:1 (x2__modcomp.Rd:46): Warning: missing </ul> before </div>
Maintainer: ‘Kevin kuang <kvn.kuang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Kuang",
                      role = c("aut", "cre"),
                      email = "kvn.kuang@mail.utoronto.ca",
                      comment = "aut"),
               person(given = "Quyu",
                      family = "Kong",
                      role = "aut",
                      comment = "ctb"),
               person(given = "Francesco",
                      family = "Napolitano",
                      role = "aut",
                      comment = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  perProb.Rd: pMvdc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
show-pbox.html:47:1 (show-pbox.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
File ‘PBSddesolve/libs/PBSddesolve.so’:
  Found non-API call to R: ‘FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
File ‘PBSmodelling/libs/PBSmodelling.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘swang1 <swang1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuangcai",
                      family = "Wang",
                      role = "aut"),
               person(family = "swang1",
                      role = "cre",
                      email = "swang1@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de",
                    comment = c(ORCID = "0000-0002-8226-3132"))
as necessary.
Found the following HTML validation problems:
get.pc.html:51:1 (get.pc.Rd:12): Warning: missing </ul> before </div>
hist_plot.html:52:1 (hist_plot.Rd:13): Warning: missing </ul> before </div>
manhattan_plot.html:68:1 (manhattan_plot.Rd:23): Warning: missing </ul> before </div>
ped2pcadapt.html:50:1 (ped2pcadapt.Rd:12): Warning: missing </ul> before </div>
print_convert.html:62:1 (print_convert.Rd:18): Warning: missing </ul> before </div>
qq_plot.html:50:1 (qq_plot.Rd:12): Warning: missing </ul> before </div>
read.pcadapt.html:96:1 (read.pcadapt.Rd:43): Warning: missing </ul> before </div>
score_plot.html:70:1 (score_plot.Rd:25): Warning: missing </ul> before </div>
scree_plot.html:52:1 (scree_plot.Rd:12): Warning: missing </ul> before </div>
vcf2pcadapt.html:57:1 (vcf2pcadapt.Rd:15): Warning: missing </ul> before </div>
vcf_convert.html:56:1 (vcf_convert.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Manuela Ott <manuela.c.ott@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘twoby2Calibrate.Rd’:
    https://doi.org/10.1080/01621459.2018.1469992
    https://doi.org/10.1111/insr.12307
checkRd: (-1) twoby2Calibrate.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:85-86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:87-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:97-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:104-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:108-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:111-116: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Elia Degiorgi <degioe@usi.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elia",
                      family = "Degiorgi",
                      role = c("aut", "cre"),
                      email = "degioe@usi.ch"),
               person(given = "Federico",
                      family = "Milan",
                      role = "aut"),
               person(given = "Davide",
                      family = "Zaramella",
                      role = "aut"),
               person(given = "Valerija",
                      family = "Stoeva",
                      role = "aut"))
as necessary.
Maintainer: ‘Pedro Fonseca <pedro.teles.fonseca@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Derek W. Brown <derek9@gwmail.gwu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Chavent <Marie.Chavent@u-bordeaux.fr>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘MFAmix.Rd’:
    \keyword{multivariate, mixed type data, data struc [TRUNCATED]
Maintainer: ‘Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
permutePval.html:77:1 (permutePval.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Yi-Hui Zhou <yihui_zhou@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi-Hui",
                    family = "Zhou",
                    role = c("aut", "cre"),
                    email = "yihui_zhou@ncsu.edu")
as necessary.
Maintainer: ‘Pariya Behrouzi <pariya.behrouzi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Willem",
                      family = "Kruijer",
                      role = "aut"),
               person(given = "Pariya",
                      family = "Behrouzi",
                      role = c("aut", "cre"),
                      email = "pariya.behrouzi@gmail.com"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"))
as necessary.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("B", "N"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
Found the following HTML validation problems:
pci_info.html:85:1 (pci_info.Rd:46): Warning: missing </ul> before </div>
Maintainer: ‘Christine Hohensinn <research@christinehohensinn.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christine",
                    family = "Hohensinn",
                    role = c("cre", "aut"),
                    email = "research@christinehohensinn.at")
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Tay",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stanford.edu"))
as necessary.

The Description field contains
  regression' <arXiv:1810.04651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrew Ying <aying9339@gmail.com>’

The Description field contains
  arXiv e-prints, arXiv-2009 <arXiv:2009.10982>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Krzysztof Bartoszek <krzbar@protonmail.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = c("aut", "cre"),
                      email = "krzbar@protonmail.ch"),
               person(given = "Pietro",
                      family = "Lio'",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) PCM_ABC.Rd:106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:108-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:114: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:117: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:205-207: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:208-211: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:212-216: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:221-224: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:225-228: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:229-231: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:232: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:233: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:234: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:235: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:236: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:237: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:238: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:239: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:240: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:58-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:67: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
PCMAbCdEf.html:96:1 (PCMAbCdEf.Rd:46): Warning: missing </ul> before </div>
PCMTreeEdgeTimes.html:46:1 (PCMTreeEdgeTimes.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘S. Varet <suzanne.varet@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "S.",
                    family = "Varet",
                    role = c("aut", "cre"),
                    email = "suzanne.varet@universite-paris-saclay.fr")
as necessary.
Maintainer: ‘Kristof Meers <kristof.meers+cran@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marlies",
                      family = "Vervloet",
                      role = c("aut", "cre")),
               person(given = "Henk",
                      family = "Kiers",
                      role = "aut"),
               person(given = "Eva",
                      family = "Ceulemans",
                      role = "ctb"),
               person(given = "Kristof",
                      family = "Meers",
                      role = "cre",
                      email = "kristof.meers+cran@kuleuven.be"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Lawrence G. Chillrud [aut, cre, cph] (<https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (<https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (<https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (<https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (<https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (<https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (00hj8s172)’
  Authors@R: ‘Lawrence G. Chillrud [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (ORCID: <https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (ORCID: <https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (ORCID: <https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (ORCID: <https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (ORCID: <https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (ROR: <https://ror.org/00hj8s172>)’
Found the following HTML validation problems:
mutate.names.matrix.p.null.html:54:1 (mutate.names.matrix.p.null.Rd:15): Warning: missing </ul> before </div>
select.pcpsmethod.html:49:1 (select.pcpsmethod.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) getPCRAData.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getPCRAData.Rd:29: Lost braces in \itemize; meant \describe ?
'::' or ':::' imports not declared from:
  ‘MASS’ ‘tensr’
'library' or 'require' calls not declared from:
  ‘MASS’ ‘facmodCS’ ‘fit.models’ ‘sandwich’
Maintainer: ‘Mahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Delia Bailey <delia.bailey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Delia",
                      family = "Bailey",
                      role = c("aut", "cre"),
                      email = "delia.bailey@gmail.com"),
               person(given = c("Jonathan", "N."),
                      family = "Katz",
                      role = "aut",
                      email = "jkatz@caltech.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jason Wilson <jason.wilson@biola.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Wilson",
                    role = c("aut", "cre"),
                    email = "jason.wilson@biola.edu")
as necessary.
Maintainer: ‘Aleksei Krasikov <krasikov.as@phystech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aleksei",
                    family = "Krasikov",
                    role = c("aut", "cre"),
                    email = "krasikov.as@phystech.edu")
as necessary.
Found the following HTML validation problems:
PeriodicTS_ts-class.html:34:1 (PeriodicTS_ts-class.Rd:17): Warning: <h3> anchor "Objects-from-the-Class" already defined
checkRd: (-1) pcvpcr.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
checkRd: (-1) pcvpls.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
Found the following HTML validation problems:
getCrossvalParams.html:50:1 (getCrossvalParams.Rd:12): Warning: missing </ul> before </div>
normalize.html:58:1 (normalize.Rd:18): Warning: missing </ul> before </div>
pcvreg.html:84:1 (pcvreg.Rd:34): Warning: missing </ul> before </div>
Found the following HTML validation problems:
summary.conjugate.html:51:1 (summary.conjugate.Rd:12): Warning: missing </ul> before </div>
summary.pcvrss.html:52:1 (summary.pcvrss.Rd:13): Warning: missing </ul> before </div>
Found the following significant warnings:
  rcpp_coxph.h:368:40: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = unsigned int; T1 = arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find>; out_eT = int; typename arma::arma_not_cx<in_eT>::result = unsigned int]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  rcpp_coxph.h:377:44: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = unsigned int; T1 = arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find>; out_eT = int; typename arma::arma_not_cx<in_eT>::result = unsigned int]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pda.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Andreas M. Brandmaier <brandmaier@mpib-berlin.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andreas", "M."),
                    family = "Brandmaier",
                    role = c("aut", "cre"),
                    email = "brandmaier@mpib-berlin.mpg.de")
as necessary.

Found the following (possibly) invalid file URI:
  URI: openclipart.org
    From: man/complex.shapes.Rd
Maintainer: ‘Menardi Giovanna <menardi@stat.unipd.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jenny Farmer <jfarmer@carolina.rr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jenny",
                      family = "Farmer",
                      role = c("aut", "cre"),
                      email = "jfarmer@carolina.rr.com"),
               person(given = "Donald",
                      family = "Jacobs",
                      role = "aut",
                      email = "djacobs1@uncc.ecu"))
as necessary.
Found the following HTML validation problems:
extract_tables.html:107:1 (extract_tables.Rd:55): Warning: missing </ul> before </div>
format_text.html:100:1 (format_text.Rd:50): Warning: missing </ul> before </div>
Maintainer: ‘Jeffrey Wong <jeff.ct.wong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Wong",
                    role = c("aut", "cre"),
                    email = "jeff.ct.wong@gmail.com")
as necessary.
Maintainer: ‘J.F. Palomeque-Gonzalez <jfpalomeque.gonzalez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.F.",
                      family = "Palomeque-Gonzalez",
                      role = c("aut", "cre"),
                      email = "jfpalomeque.gonzalez@gmail.com"),
               person(given = "M.",
                      family = "San-Juan",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhenbang Wang <bruce1edward@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Cabrera",
                      role = "aut",
                      email = "xavier.cabrera@gmail.com"),
               person(given = "Fei",
                      family = "Wang",
                      role = "aut",
                      email = "cherry8177@gmail.com"),
               person(given = "Zhenbang",
                      family = "Wang",
                      role = "cre",
                      email = "bruce1edward@gmail.com"))
as necessary.
Maintainer: ‘Luca Belmonte <luca.belmonte@unimore.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luca",
                      family = "Belmonte",
                      role = c("aut", "cre"),
                      email = "luca.belmonte@unimore.it"),
               person(given = c("Sheref", "S."),
                      family = "Mansy",
                      role = "aut",
                      email = "sheref.mansy@unitn.it"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PdPDB.Rd’:
    \keyword{PDB,}
    \keyword{alignment,}
    \keyword{metal,}
    \keyword{metalloproteins,}
    \keyword{patterns,}
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
checkRd: (-1) embedded.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) embedded.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
checkRd: (-1) ensemble.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) ensemble.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
checkRd: (-1) staged.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) staged.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
Maintainer: ‘Yuanhui Xiao <xiao_yuanhui@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuanhui",
                    family = "Xiao",
                    role = c("aut", "cre"),
                    email = "xiao_yuanhui@hotmail.com")
as necessary.
checkRd: (-1) Peacock.test-package.Rd:28: Escaped LaTeX specials: \_
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toby", "Dylan"),
                      family = "Hocking",
                      role = c("aut", "cre"),
                      email = "toby.hocking@r-project.org"),
               person(given = "Guillem",
                      family = "Rigaill",
                      role = "aut"))
as necessary.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Hughes",
                    role = c("aut", "cre"),
                    email = "drjphughesjr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juha Karvanen <juha.karvanen@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Juha",
                    family = "Karvanen",
                    role = c("aut", "cre"),
                    email = "juha.karvanen@iki.fi")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
pedbp-defunct.html:74:1 (pedbp-defunct.Rd:40): Warning: missing </ul> before </div>
checkRd: (-1) variogramGuess.Rd:94: Lost braces
    94 | Method \code{"b"} was proposed by \doi{10.1016/0098-3004(95)00095-X}{Jian et al. (1996)} and
       |                                                                     ^
checkRd: (-1) variogramGuess.Rd:98: Lost braces
    98 | \doi{10.1016/j.cageo.2008.10.011}{Hiemstra et al. (2009)}.
       |                                  ^
checkRd: (-1) variogramGuess.Rd:100: Lost braces
   100 | Method \code{"d"} was developed by \doi{10.1007/s11004-012-9434-1}{Desassis & Renard (2012)}.
       |                                                                   ^
Found the following HTML validation problems:
plotModelSeries.html:173:1 (plotModelSeries.Rd:115): Warning: <h4> anchor "obj" already defined
plotModelSeries.html:191:1 (plotModelSeries.Rd:124): Warning: <h4> anchor "grid" already defined
plotModelSeries.html:217:1 (plotModelSeries.Rd:146): Warning: <h4> anchor "line" already defined
plotModelSeries.html:231:1 (plotModelSeries.Rd:156): Warning: <h4> anchor "arrange" already defined
plotModelSeries.html:260:1 (plotModelSeries.Rd:181): Warning: <h4> anchor "ind" already defined
Found the following HTML validation problems:
md_bond.html:71:1 (md_bond.Rd:23): Warning: missing </ul> before </div>
md_money.html:63:1 (md_money.Rd:19): Warning: missing </ul> before </div>
md_moneycn.html:63:1 (md_moneycn.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.nucleus.html:51:1 (print.nucleus.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
haplotype.html:152:1 (haplotype.Rd:99): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Qingyang Zhang <qz008@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "qz008@uark.edu"),
               person(given = "Yanchuan",
                      family = "Li",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PEGroupTesting-package.Rd’:
    \keyword{Group testing, maximum likelihood estimat [TRUNCATED]
Maintainer: ‘Stéphane Guerrier <stef.guerrier@gmail.com>’

The Description field contains
  methods proposed in Guerrier et al. (2023) <arXiv:2012.10745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniele Cuntrera <daniele.cuntrera@unipa.it>’

The Description field contains
  Muggeo, V. M. (2022) <arXiv:2212.08582>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Christian Schellhase <cschellhase@wiwi.uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Schellhase",
                    role = c("aut", "cre"),
                    email = "cschellhase@wiwi.uni-bielefeld.de")
as necessary.
checkRd: (-1) my.bspline.Rd:38: Escaped LaTeX specials: \$ \$ \$
Maintainer: ‘Andreas Groll <groll@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Groll",
                    role = c("aut", "cre"),
                    email = "groll@statistik.tu-dortmund.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘pencoxfrail.rd’:
    \keyword{Cox frailty model; LASSO; Penalization; T [TRUNCATED]
'library' or 'require' call not declared from: ‘mgcv’
Maintainer: ‘Christian Schellhase <christian.schellhase@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Schellhase",
                    role = c("aut", "cre"),
                    email = "christian.schellhase@gmx.net")
as necessary.
checkRd: (-1) my.bspline.Rd:21: Escaped LaTeX specials: \$ \$ \$ \$ \$ \$
checkRd: (-1) my.bspline.Rd:27: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) pendensity.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:57: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:82: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:96: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:100: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:105: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:109: Escaped LaTeX specials: \$
Maintainer: ‘Elena Geminiani <geminianielena@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yan Liu <yanliuresearch@gmail.com>’

The Description field contains
  (2019) <arXiv:1912.11703>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/penPHcure.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
AtA.html:46:1 (AtA.Rd:10): Warning: missing </ul> before </div>
eigenMatMult.html:48:1 (eigenMatMult.Rd:13): Warning: missing </ul> before </div>
manyouter.html:50:1 (manyouter.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-find_stable_bdb_bisquare.html:74:1 (dot-find_stable_bdb_bisquare.Rd:26): Warning: missing </ul> before </div>
dot-run_replicated_cv.html:82:1 (dot-run_replicated_cv.Rd:34): Warning: missing </ul> before </div>
print.nsoptim_metrics.html:51:1 (print.nsoptim_metrics.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Levi Waldron <lwaldron.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Levi",
                    family = "Waldron",
                    role = c("aut", "cre"),
                    email = "lwaldron.research@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nathan Sheffield <nathan@code.databio.org>’

The BugReports field in DESCRIPTION has
  https://github.com/pepkit/pepr
which should likely be
  https://github.com/pepkit/pepr/issues
instead.
Found the following HTML validation problems:
extract_ranked.html:61:1 (extract_ranked.Rd:15): Warning: missing </ul> before </div>
print.filterMS.html:51:1 (print.filterMS.Rd:12): Warning: missing </ul> before </div>
print.msDat.html:51:1 (print.msDat.Rd:12): Warning: missing </ul> before </div>
print.rankEN.html:51:1 (print.rankEN.Rd:12): Warning: missing </ul> before </div>
summary.binMS.html:54:1 (summary.binMS.Rd:12): Warning: missing </ul> before </div>
summary.filterMS.html:53:1 (summary.filterMS.Rd:12): Warning: missing </ul> before </div>
summary.rankEN.html:60:1 (summary.rankEN.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
diffcalc.html:50:1 (diffcalc.Rd:12): Warning: missing </ul> before </div>
nolesser.html:50:1 (nolesser.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jorge Cimentada <cimentadaj@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
DrawdownDeviation.html:54:1 (DrawdownDeviation.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
b_rcs.html:56:1 (b_rcs.Rd:14): Warning: missing </ul> before </div>
b_rcs_prime.html:51:1 (b_rcs_prime.Rd:12): Warning: missing </ul> before </div>
plot_per_mod.html:131:1 (plot_per_mod.Rd:54): Warning: missing </ul> before </div>
rcs_per.html:78:1 (rcs_per.Rd:34): Warning: missing </ul> before </div>
Maintainer: ‘Julien Idé <julien.ide.fr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Idé",
                    role = c("aut", "cre"),
                    email = "julien.ide.fr@gmail.com")
as necessary.
Found the following HTML validation problems:
add_left_sidebar.html:46:1 (add_left_sidebar.Rd:10): Warning: missing </ul> before </div>
add_reset_button.html:46:1 (add_reset_button.Rd:10): Warning: missing </ul> before </div>
add_right_sidebar.html:46:1 (add_right_sidebar.Rd:10): Warning: missing </ul> before </div>
remove_reset_button.html:46:1 (remove_reset_button.Rd:10): Warning: missing </ul> before </div>
ui_tooltip.html:55:1 (ui_tooltip.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Marie-Pierre Sylvestre <marie-pierre.sylvestre@umontreal.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie-Pierre",
                      family = "Sylvestre",
                      role = c("aut", "cre"),
                      email = "marie-pierre.sylvestre@umontreal.ca"),
               person(given = "Thad",
                      family = "Edens",
                      role = "aut"),
               person(given = "Todd",
                      family = "MacKenzie",
                      role = "aut"),
               person(given = "Michal",
                      family = "Abrahamowicz",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Laura Vicente-Gonzalez <laura20vg@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Laura",
                      family = "Vicente-Gonzalez",
                      role = c("aut", "cre"),
                      email = "laura20vg@usal.es"),
               person(given = c("Jose", "Luis"),
                      family = "Vicente-Villardon",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dot-onAttach.html:51:1 (dot-onAttach.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Fay",
                      role = "aut"),
               person(given = c("Michael", "P."),
                      family = "Fay",
                      role = "cre",
                      email = "mfay@niaid.nih.gov"))
as necessary.
Maintainer: ‘Alfonso Benitez-Paez <alfbenpa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alfonso",
                    family = "Benitez-Paez",
                    role = c("aut", "cre"),
                    email = "alfbenpa@gmail.com")
as necessary.
Maintainer: ‘Osama Abdalla <osama.abdalla@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Osama",
                    family = "Abdalla",
                    role = c("aut", "cre"),
                    email = "osama.abdalla@mail.utoronto.ca")
as necessary.
Maintainer: ‘Gabriel Kaiser <quantresearch.gk@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘perplexR-package.Rd’:
    \keyword{annotate;}
Found the following HTML validation problems:
API_Request.html:109:1 (API_Request.Rd:53): Warning: missing </ul> before </div>
execAddin.html:46:1 (execAddin.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Roozbeh Safshekan <rse@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Roozbeh",
                      family = "Safshekan",
                      role = c("aut", "cre"),
                      email = "rse@mit.edu"),
               person(given = "Rich",
                      family = "Nielsen",
                      role = "aut"))
as necessary.
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
HDtweedie_kfold_aug.html:82:1 (HDtweedie_kfold_aug.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.individual_treatment_effects.html:55:1 (print.individual_treatment_effects.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
update_core.html:68:1 (update_core.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Maintainer: ‘Kenneth B. Hoehn <perspectev@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  http://evolve.zoo.ox.ac.uk/Evolve/Perspectev.html.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘KM Gates <gateskm@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "KM",
                      family = "Gates",
                      role = c("aut", "cre"),
                      email = "gateskm@email.unc.edu"),
               person(given = "Zachary",
                      family = "Fisher",
                      role = "aut"),
               person(given = "Cara",
                      family = "Arizmendi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
is_Iterator.html:46:1 (is_Iterator.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Piotr Sobczyk <pj.sobczyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Sobczyk",
                      role = c("aut", "cre"),
                      email = "pj.sobczyk@gmail.com"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Malgorzata",
                      family = "Bogdan",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Fixed issues
Found the following HTML validation problems:
data_NorthernPike.html:67:1 (data_NorthernPike.Rd:19): Warning: missing </ul> before </div>
data_NorthernPike_tagloss.html:66:1 (data_NorthernPike_tagloss.Rd:19): Warning: missing </ul> before </div>
data_rodli.html:63:1 (data_rodli.Rd:17): Warning: missing </ul> before </div>
data_spas_harrison.html:59:1 (data_spas_harrison.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Aaron Schlegel <aaron@aaronschlegel.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Schlegel",
                    role = c("aut", "cre"),
                    email = "aaron@aaronschlegel.me")
as necessary.
Found the following HTML validation problems:
dot-Petfinder.class.html:196:1 (dot-Petfinder.class.Rd:118): Warning: missing </ul> before </div>
dot-Petfinder.class.html:80:1 (dot-Petfinder.class.Rd:35): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:94:1 (dot-Petfinder.class.Rd:44): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:108:1 (dot-Petfinder.class.Rd:53): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:145:1 (dot-Petfinder.class.Rd:85): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:173:1 (dot-Petfinder.class.Rd:107): Warning: <h5> anchor "Usage" already defined
checkRd: (-1) read_PN.Rd:15: Lost braces
    15 | A code{\link{marked_petrinet}}
       |       ^
Found the following HTML validation problems:
Utils.html:82:1 (Utils.Rd:44): Warning: missing </ul> before </div>
enabled.html:46:1 (enabled.Rd:10): Warning: missing </ul> before </div>
enabled_transition.html:50:1 (enabled_transition.Rd:12): Warning: missing </ul> before </div>
execute.html:52:1 (execute.Rd:12): Warning: missing </ul> before </div>
final_marking.html:46:1 (final_marking.Rd:10): Warning: missing </ul> before </div>
initial_marking.html:46:1 (initial_marking.Rd:10): Warning: missing </ul> before </div>
marking.html:46:1 (marking.Rd:10): Warning: missing </ul> before </div>
nodes.html:46:1 (nodes.Rd:10): Warning: missing </ul> before </div>
parse_trace.html:50:1 (parse_trace.Rd:12): Warning: missing </ul> before </div>
parsel_trace.html:50:1 (parsel_trace.Rd:12): Warning: missing </ul> before </div>
part_of.html:50:1 (part_of.Rd:12): Warning: missing </ul> before </div>
post_set.html:50:1 (post_set.Rd:12): Warning: missing </ul> before </div>
pre_set.html:50:1 (pre_set.Rd:12): Warning: missing </ul> before </div>
render_PN.html:46:1 (render_PN.Rd:10): Warning: missing </ul> before </div>
visNetwork_from_PN.html:46:1 (visNetwork_from_PN.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
eco.xxx.regression.list.html:61:1 (eco.xxx.regression.list.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Washington Junger <wjunger@ims.uerj.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Washington",
                    family = "Junger",
                    role = c("aut", "cre"),
                    email = "wjunger@ims.uerj.br")
as necessary.
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘pgdraw-package.Rd’:
    \keyword{distribution,}
Maintainer: ‘Gul Inan <ginan@metu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = c("aut", "cre"),
                      email = "ginan@metu.edu.tr",
                      comment = "Lecturer, Middle East Technical University"),
               person(given = "Jianhui",
                      family = "Zhou",
                      role = "aut",
                      comment = "Associate Professor, University of Virginia"),
               person(given = "Lan",
                      family = "Wang",
                      role = "aut",
                      comment = c(ROR = "Professor", "University of Minnesota")))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PGEE-package.Rd’:
    \keyword{high-dimensional covariates, longitudinal [TRUNCATED]
checkRd: (-1) PatentsRD.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRD.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRDUS.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) DTV.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Yang Feng <yangfengstat@gmail.com>’

The Description field contains
  projection as introduced in Fan, Feng and Xia (2019)<arXiv:1501.01617>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’
  Authors@R: ‘J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’
Maintainer: ‘Gangcai Xie <gcxiester@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gangcai",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "gcxiester@gmail.com")
as necessary.
Maintainer: ‘Philip Barrett <pobarrett@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Barrett",
                    role = c("aut", "cre"),
                    email = "pobarrett@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pgsc.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Rui",
                      family = "Qin",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘animation.gif’
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Rui",
                      family = "Qin",
                      role = "aut"))
as necessary.
checkRd: (-1) PhageCocktail.Rd:100-103: Lost braces
   100 | "Result": {
       |           ^
checkRd: (-1) PhageCocktail.Rd:105-112: Lost braces
   105 | "BacteriaLysed": {
       |                  ^
Found the following HTML validation problems:
get_terms.html:60:1 (get_terms.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
broadcast_log.html:53:1 (broadcast_log.Rd:12): Warning: missing </ul> before </div>
check_pharmpy.html:46:1 (check_pharmpy.Rd:10): Warning: missing </ul> before </div>
create_report.html:52:1 (create_report.Rd:12): Warning: missing </ul> before </div>
install_pharmpy.html:50:1 (install_pharmpy.Rd:12): Warning: missing </ul> before </div>
install_pharmpy_devel.html:58:1 (install_pharmpy_devel.Rd:18): Warning: missing </ul> before </div>
print_fit_summary.html:50:1 (print_fit_summary.Rd:12): Warning: missing </ul> before </div>
print_log.html:46:1 (print_log.Rd:10): Warning: missing </ul> before </div>
reset_index.html:48:1 (reset_index.Rd:10): Warning: missing </ul> before </div>
reset_indices_results.html:46:1 (reset_indices_results.Rd:10): Warning: missing </ul> before </div>
write_results.html:60:1 (write_results.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Lu Zhang <luzhangstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "luzhangstat@gmail.com"),
               person(given = "Jun",
                      family = "Yin",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
patlist.display.html:71:1 (patlist.display.Rd:21): Warning: missing </ul> before </div>
print.summary.RunPRMD.html:53:1 (print.summary.RunPRMD.Rd:12): Warning: missing </ul> before </div>
print.summary.SimPRMD.html:51:1 (print.summary.SimPRMD.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jun Yin <vivien.jyin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Yin",
                      role = c("aut", "cre"),
                      email = "vivien.jyin@gmail.com"),
               person(given = "Yu",
                      family = "Du",
                      role = "aut"),
               person(given = "Sumithra",
                      family = "Mandrekar",
                      role = "aut"))
as necessary.
checkRd: (-1) rosePlotsAct.Rd:19: Lost braces; missing escapes or markup?
    19 | A \code{plotly} {htmlwidget} with rose plots for locomotor activity.
       |                 ^
checkRd: (-1) rosePlotsSleep.Rd:19: Lost braces; missing escapes or markup?
    19 | #' @return A \code{plotly} {htmlwidget} with rose plots for sleep data.
       |                            ^
Found the following HTML validation problems:
check_reward.html:51:1 (check_reward.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.html:51:1 (as.data.frame.Rd:12): Warning: missing </ul> before </div>
as.matrix.html:52:1 (as.matrix.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Zhili Qiao <zlqiao@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhili",
                    family = "Qiao",
                    role = c("aut", "cre"),
                    email = "zlqiao@iastate.edu")
as necessary.
Maintainer: ‘Jesse Hemerik <jesse.hemerik@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "jesse.hemerik@wur.nl"),
               person(given = "Livio",
                      family = "Finos",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Doktor <daniel.doktor@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Doktor",
                      role = c("aut", "cre"),
                      email = "daniel.doktor@ufz.de"))
as necessary.
Maintainer: ‘Maximilian Lange <maximilian.lange@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maximilian",
                    family = "Lange",
                    role = c("aut", "cre"),
                    email = "maximilian.lange@ufz.de")
as necessary.
Maintainer: ‘Koen Hufkens <koen.hufkens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bijan",
                      family = "Seyednasrollah",
                      role = c("aut", "cre"),
                      email = "bijan.s.nasr@gmail.com"),
               person(given = c("Jennifer", "J."),
                      family = "Swenson",
                      role = "aut"),
               person(given = "Jean-Christophe",
                      family = "Domec",
                      role = "aut"),
               person(given = c("James", "S."),
                      family = "Clark",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
f_goal2.html:78:1 (f_goal2.Rd:28): Warning: missing </ul> before </div>
find_season.peaks.html:56:1 (find_season.peaks.Rd:21): Warning: missing </ul> before </div>
lambda_vcurve.html:72:1 (lambda_vcurve.Rd:28): Warning: missing </ul> before </div>
plot_phenofit.html:85:1 (plot_phenofit.Rd:35): Warning: missing </ul> before </div>
plot_season.html:92:1 (plot_season.Rd:40): Warning: missing </ul> before </div>
process_phenofit.html:76:1 (process_phenofit.Rd:32): Warning: missing </ul> before </div>
rcpp_season_filter.html:68:1 (rcpp_season_filter.Rd:26): Warning: missing </ul> before </div>
season_input.html:55:1 (season_input.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
FitDoubleLogBeck.html:102:1 (FitDoubleLogBeck.Rd:47): Warning: missing </ul> before </div>
FitDoubleLogElmore.html:96:1 (FitDoubleLogElmore.Rd:43): Warning: missing </ul> before </div>
Maintainer: ‘Maximilian Lange <maximilian.lange@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joerg",
                      family = "Schaber",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Lange",
                      role = "cre",
                      email = "maximilian.lange@ufz.de"))
as necessary.
checkRd: (-1) connectedSets.Rd:27: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:29: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:31: Escaped LaTeX specials: \_ \_
checkRd: (-1) maxConnectedSet.Rd:35: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:37: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:39: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:41: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:45: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:47: Escaped LaTeX specials: \_ \_
Found the following HTML validation problems:
cohortDoc.html:40:1 (cohortDoc.Rd:7): Warning: missing </ul> before </div>
directoryDoc.html:40:1 (directoryDoc.Rd:7): Warning: missing </ul> before </div>
expectationsDoc.html:40:1 (expectationsDoc.Rd:7): Warning: missing </ul> before </div>
matchedDoc.html:42:1 (matchedDoc.Rd:9): Warning: missing </ul> before </div>
populationSampleDoc.html:51:1 (populationSampleDoc.Rd:16): Warning: missing </ul> before </div>
resultDoc.html:40:1 (resultDoc.Rd:7): Warning: missing </ul> before </div>
survivalDoc.html:40:1 (survivalDoc.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Hannah Meyer <hannah.v.meyer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
read_lines.html:54:1 (read_lines.Rd:14): Warning: missing </ul> before </div>
testNumerics.html:60:1 (testNumerics.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Janez Komelj <jkomelj@siol.net>’

The Description field contains
  <doi:10.4236/ajcm.2023.134026> (or reprint <arXiv:2312.00011> with
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ursula Neumann <ursula.neumann@uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nikolas",
                      family = "Rothe",
                      role = "aut"),
               person(given = "Ursula",
                      family = "Neumann",
                      role = c("aut", "cre"),
                      email = "ursula.neumann@uni-marburg.de"))
as necessary.
Maintainer: ‘John E. Kolassa <kolassa@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "E."),
                      family = "Kolassa",
                      role = c("aut", "cre"),
                      email = "kolassa@stat.rutgers.edu"),
               person(given = "Juan",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
andersenplot.html:46:1 (andersenplot.Rd:10): Warning: missing </ul> before </div>
arjasplot.html:70:1 (arjasplot.Rd:22): Warning: missing </ul> before </div>
compete.simulation.html:54:1 (compete.simulation.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘df_to_tier.R’
Maintainer: ‘Daniel R. McCloy <drmccloy@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "R."),
                    family = "McCloy",
                    role = c("aut", "cre"),
                    email = "drmccloy@uw.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘indo.Rd’:
    http://dx.doi.org/10.1121/1.4870068
  File ‘normVowels.Rd’:
    http://dx.doi.org/10.1016/0378-5955(90)90170-T
    http://dx.doi.org/10.1121/1.1912396
    http://dx.doi.org/10.1121/1.399849
  File ‘repulsiveForce.Rd’:
    http://dx.doi.org/10.1177/0023830914559234
    http://dx.doi.org/10.1145/378456.378457
Maintainer: ‘Santiago Barreda <sbarreda@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Santiago",
                    family = "Barreda",
                    role = c("aut", "cre"),
                    email = "sbarreda@ucdavis.edu")
as necessary.
Found the following HTML validation problems:
Trig.html:66:1 (Trig.Rd:26): Warning: missing </ul> before </div>
absorbance_spct.html:78:1 (absorbance_spct.Rd:29): Warning: missing </ul> before </div>
absorptance_spct.html:78:1 (absorptance_spct.Rd:29): Warning: missing </ul> before </div>
adaptive_smoothing.html:67:1 (adaptive_smoothing.Rd:25): Warning: missing </ul> before </div>
check_and_rename_vars.html:79:1 (check_and_rename_vars.Rd:33): Warning: missing </ul> before </div>
clean_spct.html:69:1 (clean_spct.Rd:22): Warning: missing </ul> before </div>
clear_photobio.cache.html:47:1 (clear_photobio.cache.Rd:11): Warning: missing </ul> before </div>
f_dispatcher_spct.html:55:1 (f_dispatcher_spct.Rd:14): Warning: missing </ul> before </div>
make_wl_consistent.html:54:1 (make_wl_consistent.Rd:12): Warning: missing </ul> before </div>
print.waveband.html:51:1 (print.waveband.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bake-par.R’ ‘bake.R’ ‘calculated-parameters.R’ ‘conductance.R’
    ‘constants.R’ ‘enviro-par.R’ ‘fit_aq_response.R’
    ‘fit_aq_response2.Rd’ ‘fit_photosynthesis.R’ ‘fit_r_light.R’
    ‘fit_r_light2.Rd’ ‘leaf-par.R’ ‘make_parameters.R’ ‘models.R’
    ‘parameter_names.R’ ‘photosynthesis.R’ ‘read_licor.R’
    ‘simulate_error.R’ ‘simulate_error.Rd’ ‘utils.R’
Found the following HTML validation problems:
calculated-parameters.html:46:1 (calculated-parameters.Rd:12): Warning: missing </ul> before </div>
required_variables.html:50:1 (required_variables.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
make_inheritance_checks.html:60:1 (make_inheritance_checks.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Jennifer Pohle <jennifer.pohle@uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jennifer",
                    family = "Pohle",
                    role = c("aut", "cre"),
                    email = "jennifer.pohle@uni-bielefeld.de")
as necessary.

The Description field contains
  hidden semi-Markov models. <arXiv:2101.09197>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Caterina Pisani <caterina.pisani@unisi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Caterina",
                    family = "Pisani",
                    role = c("aut", "cre"),
                    email = "caterina.pisani@unisi.it")
as necessary.
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
Maintainer: ‘John R. Stevens <john.r.stevens@usu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Conrad"),
                      family = "Stack",
                      role = "aut"),
               person(given = c("John", "R."),
                      family = "Stevens",
                      role = "cre",
                      email = "john.r.stevens@usu.edu"))
as necessary.
Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Francois Michonneau <francois.michonneau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R", "Hackathon", "et"),
                      family = "al.",
                      role = "aut",
                      comment = "alphabetically: Ben Bolker, Marguerite Butler,\n    Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut\n    Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara,\n    Emmanuel Paradis, Jim Regetz, Derrick Zwickl"),
               person(given = "Francois",
                      family = "Michonneau",
                      role = "cre",
                      email = "francois.michonneau@gmail.com"))
as necessary.
Found the following HTML validation problems:
as_tree-methods.html:54:1 (as_tree-methods.Rd:25): Warning: missing </ul> before </div>
phylocanvas-shiny.html:68:1 (phylocanvas-shiny.Rd:25): Warning: missing </ul> before </div>
phylocanvas.html:103:1 (phylocanvas.Rd:41): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_range_alpha.html:51:1 (check_range_alpha.Rd:12): Warning: missing </ul> before </div>
qr_solve_exact.html:58:1 (qr_solve_exact.Rd:16): Warning: missing </ul> before </div>
transform_shifts_values.html:62:1 (transform_shifts_values.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Shaun Wilkinson <shaunpwilkinson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ramon Diaz-Uriarte <rdiaz02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Diaz-Uriarte",
                      role = c("aut", "cre"),
                      email = "rdiaz@cnio.es"),
               person(given = "Theodore",
                      family = "Garland",
                      role = "aut"),
               person(family = "Jr",
                      role = "aut",
                      email = "theodore.garland@ucr.edu"))
as necessary.
checkRd: (-1) GarlandJanis.IC.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.IC.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:7: Escaped LaTeX specials: \&
Maintainer: ‘Xia Hua <xia.hua@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xia",
                      family = "Hua",
                      role = c("aut", "cre"),
                      email = "xia.hua@anu.edu.au"),
               person(given = "Lindell",
                      family = "Bromham",
                      role = "aut",
                      email = "lindell.bromham@anu.edu.au"))
as necessary.
Found the following HTML validation problems:
fpd.html:50:1 (fpd.Rd:12): Warning: missing </ul> before </div>
noto.html:50:1 (noto.Rd:12): Warning: missing </ul> before </div>
sscd.html:50:1 (sscd.Rd:12): Warning: missing </ul> before </div>
tars.html:50:1 (tars.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
show_warnings.html:48:1 (show_warnings.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
vcov.phylosem.html:55:1 (vcov.phylosem.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Julia Fukuyama <julia.fukuyama@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julia",
                    family = "Fukuyama",
                    role = c("aut", "cre"),
                    email = "julia.fukuyama@gmail.com")
as necessary.
Found the following HTML validation problems:
print.psgraphtest.html:51:1 (print.psgraphtest.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Found the following HTML validation problems:
dotplot.html:46:1 (dotplot.Rd:10): Warning: missing </ul> before </div>
gridplot.html:46:1 (gridplot.Rd:10): Warning: missing </ul> before </div>
kStarTest.html:54:1 (kStarTest.Rd:14): Warning: missing </ul> before </div>
kTest.html:54:1 (kTest.Rd:14): Warning: missing </ul> before </div>
layouterize.html:50:1 (layouterize.Rd:12): Warning: missing </ul> before </div>
layouterizeRatio.html:54:1 (layouterizeRatio.Rd:14): Warning: missing </ul> before </div>
mantelStat.html:50:1 (mantelStat.Rd:12): Warning: missing </ul> before </div>
moranTest.html:54:1 (moranTest.Rd:14): Warning: missing </ul> before </div>
multiplot.phylo4d.html:282:1 (multiplot.phylo4d.Rd:165): Warning: missing </ul> before </div>
plot.phylosimsignal.html:94:1 (plot.phylosimsignal.Rd:41): Warning: missing </ul> before </div>
print.graphclust.html:51:1 (print.graphclust.Rd:12): Warning: missing </ul> before </div>
print.phylosimsignal.html:51:1 (print.phylosimsignal.Rd:12): Warning: missing </ul> before </div>
white2red.html:46:1 (white2red.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Beer <dlbeer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Beer",
                      role = c("aut", "cre"),
                      email = "dlbeer@gmail.com"),
               person(given = "Anusha",
                      family = "Beer",
                      role = "aut"))
as necessary.
Maintainer: ‘Alan Grafen <alan.grafen@sjc.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Grafen",
                    role = c("aut", "cre"),
                    email = "alan.grafen@sjc.ox.ac.uk")
as necessary.
Found the following significant warnings:
  cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following HTML validation problems:
family.communityPGLMM.html:53:1 (family.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
model.frame.communityPGLMM.html:62:1 (model.frame.communityPGLMM.Rd:22): Warning: missing </ul> before </div>
nobs.communityPGLMM.html:56:1 (nobs.communityPGLMM.Rd:15): Warning: missing </ul> before </div>
print.communityPGLMM.html:55:1 (print.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
print.pglmm_compare.html:55:1 (print.pglmm_compare.Rd:14): Warning: missing </ul> before </div>
simulate.communityPGLMM.html:66:1 (simulate.communityPGLMM.Rd:21): Warning: missing </ul> before </div>
summary.communityPGLMM.html:55:1 (summary.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
summary.pglmm_compare.html:55:1 (summary.pglmm_compare.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘J. Dustin Tracy <tracy@chapman.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Dustin"),
                      family = "Tracy",
                      role = c("aut", "cre"),
                      email = "tracy@chapman.edu"),
               person(given = "Zhiyi",
                      family = "Xu",
                      role = "aut"),
               person(given = "Sari",
                      family = "Acra",
                      role = "aut"),
               person(given = c("Kong", "Y."),
                      family = "Chen",
                      role = "aut"),
               person(given = c("Maciej", "S."),
                      family = "Buchowski",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Donnelly",
                      role = "aut"))
as necessary.
checkRd: (-1) pa-internal.Rd:11: Lost braces
    11 | code{l2df}: convert list to data.frame
       |     ^
checkRd: (-1) pa-internal.Rd:14: Lost braces
    14 | code{convertTZ}: force a new timezone on datetime
       |     ^
checkRd: (-1) pa-internal.Rd:16: Lost braces
    16 | code{createTime}: create datetime variable
       |     ^
checkRd: (-1) pa-internal.Rd:18: Lost braces
    18 | code{addDayIndex}: create ID_day variable from timestamp
       |     ^
Maintainer: ‘Steven W. Kembel <steve.kembel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Steven", "W."),
                      family = "Kembel",
                      role = c("aut", "cre"),
                      email = "steve.kembel@gmail.com"),
               person(given = c("David", "D."),
                      family = "Ackerly",
                      role = "aut",
                      email = "dackerly@berkeley.edu"),
               person(given = c("Simon", "P."),
                      family = "Blomberg",
                      role = "aut",
                      email = "s.blomberg1@uq.edu.au"),
               person(given = c("Will", "K."),
                      family = "Cornwell",
                      role = "aut",
                      email = "cornwell@zoology.ubc.ca"),
               person(given = c("Peter", "D."),
                      family = "Cowan",
                      role = "aut",
                      email = "pdc@berkeley.edu"),
               person(given = c("Matthew", "R."),
                      family = "Helmus",
                      role = "aut",
                      email = "mrhelmus@wisc.edu"),
               person(given = "Helene",
                      family = "Morlon",
                      role = "aut",
                      email = "morlon.helene@gmail.com"),
               person(given = c("Campbell", "O."),
                      family = "Webb",
                      role = "aut",
                      email = "cwebb@oeb.harvard.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) IvesGodfray.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Kcalc.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) phylocom.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylosignal.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) sample2matrix.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) traitgram.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) utility.Rd:37: Escaped LaTeX specials: \$ \$
Maintainer: ‘Chun Pan <chunpan2003@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chun",
                    family = "Pan",
                    role = c("aut", "cre"),
                    email = "chunpan2003@hotmail.com")
as necessary.
Maintainer: ‘Matt Deppe <deppemj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Deppe",
                    role = c("aut", "cre"),
                    email = "deppemj@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exr-read.R’ ‘exr-types-read.R’ ‘exr-write.R’ ‘utils.R’
Maintainer: ‘Andrew G. Chapple <agc6@rice.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G."),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "agc6@rice.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘piecenorm.R’
Found the following HTML validation problems:
normalisr.html:198:1 (normalisr.Rd:218): Warning: <h5> anchor "Usage" already defined
normalisr.html:214:1 (normalisr.Rd:228): Warning: <h5> anchor "Usage" already defined
normalisr.html:231:1 (normalisr.Rd:239): Warning: <h5> anchor "Usage" already defined
normalisr.html:247:1 (normalisr.Rd:249): Warning: <h5> anchor "Usage" already defined
normalisr.html:253:1 (normalisr.Rd:253): Warning: <h5> anchor "Arguments" already defined
normalisr.html:276:1 (normalisr.Rd:266): Warning: <h5> anchor "Usage" already defined
normalisr.html:282:1 (normalisr.Rd:270): Warning: <h5> anchor "Arguments" already defined
normalisr.html:305:1 (normalisr.Rd:283): Warning: <h5> anchor "Usage" already defined
normalisr.html:321:1 (normalisr.Rd:293): Warning: <h5> anchor "Usage" already defined
normalisr.html:327:1 (normalisr.Rd:297): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
as.psem.html:50:1 (as.psem.Rd:12): Warning: missing </ul> before </div>
cbind_fill.html:48:1 (cbind_fill.Rd:12): Warning: missing </ul> before </div>
evaluateClasses.html:46:1 (evaluateClasses.Rd:10): Warning: missing </ul> before </div>
getDAG.html:46:1 (getDAG.Rd:10): Warning: missing </ul> before </div>
print.anova.psem.html:51:1 (print.anova.psem.Rd:12): Warning: missing </ul> before </div>
print.basisSet.html:51:1 (print.basisSet.Rd:12): Warning: missing </ul> before </div>
print.multigroup.psem.html:51:1 (print.multigroup.psem.Rd:12): Warning: missing </ul> before </div>
print.psem.html:51:1 (print.psem.Rd:12): Warning: missing </ul> before </div>
print.summary.psem.html:51:1 (print.summary.psem.Rd:12): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
deprecated.html:68:1 (deprecated.Rd:22): Warning: missing </ul> before </div>
extra_cols.html:63:1 (extra_cols.Rd:19): Warning: missing </ul> before </div>
new_tbl_format_setup.html:110:1 (new_tbl_format_setup.Rd:49): Warning: missing </ul> before </div>
scale_x_num.html:219:1 (scale_x_num.Rd:117): Warning: missing </ul> before </div>
tbl_nrow.html:51:1 (tbl_nrow.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.cima.html:61:1 (print.cima.Rd:18): Warning: missing </ul> before </div>
print.pima.html:61:1 (print.pima.Rd:18): Warning: missing </ul> before </div>
print.pima_tau2h.html:56:1 (print.pima_tau2h.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
confint.pim.html:66:1 (confint.pim.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Michael",
                      family = "Yan",
                      role = "aut"))
as necessary.
Maintainer: ‘Danilo Freire <danilofreire@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
cache_browse.html:71:1 (cache_browse.Rd:17): Warning: missing </ul> before </div>
custom-pins.html:89:1 (custom-pins.Rd:40): Warning: missing </ul> before </div>
new_board.html:74:1 (new_board.Rd:30): Warning: missing </ul> before </div>
pin_default_name.html:50:1 (pin_default_name.Rd:12): Warning: missing </ul> before </div>
pin_exists.html:55:1 (pin_exists.Rd:15): Warning: missing </ul> before </div>
pin_log.html:46:1 (pin_log.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
bin_chopper.html:54:1 (bin_chopper.Rd:14): Warning: missing </ul> before </div>
bindividual_alpha.html:50:1 (bindividual_alpha.Rd:12): Warning: missing </ul> before </div>
contiguize_intervals.html:68:1 (contiguize_intervals.Rd:24): Warning: missing </ul> before </div>
flatten_cp_bin_intervals.html:50:1 (flatten_cp_bin_intervals.Rd:12): Warning: missing </ul> before </div>
minq_to_alpha.html:50:1 (minq_to_alpha.Rd:12): Warning: missing </ul> before </div>
pinterval_bcbootstrap.html:110:1 (pinterval_bcbootstrap.Rd:48): Warning: missing </ul> before </div>
weights_calculator.html:50:1 (weights_calculator.Rd:12): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Brenton M. Wiernik [cre, aut] (<https://orcid.org/0000-0001-9560-6336>, @bmwiernik)’
  Authors@R: ‘Brenton M. Wiernik [cre, aut] (ORCID: <https://orcid.org/0000-0001-9560-6336>, Twitter: @bmwiernik)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aliases.Rd’ ‘bind.Rd’
Maintainer: ‘Michael Sweeting <mjs212@medschl.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Sweeting",
                    role = c("aut", "cre"),
                    email = "mjs212@medschl.cam.ac.uk")
as necessary.
Maintainer: ‘Sahil Seth <me@sahilseth.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Houston", "R"),
                      family = "Users",
                      role = "aut"),
               person(given = "Neeraj",
                      family = "Tandon",
                      role = "aut"),
               person(given = "Ed",
                      family = "Goodwin",
                      role = "aut"),
               person(given = c("Ju", "Yeong"),
                      family = "Kim",
                      role = "aut"),
               person(given = "Sahil",
                      family = "Seth",
                      role = c("aut", "cre"),
                      email = "me@sahilseth.com"))
as necessary.
Found the following HTML validation problems:
make_list.html:46:1 (make_list.Rd:10): Warning: missing </ul> before </div>
make_output.html:46:1 (make_output.Rd:10): Warning: missing </ul> before </div>
splitlisttodf.html:46:1 (splitlisttodf.Rd:10): Warning: missing </ul> before </div>
splitmultistrtolist.html:46:1 (splitmultistrtolist.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alex Ioannides <alex.ioannides@yahoo.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Ioannides",
                    role = c("aut", "cre"),
                    email = "alex.ioannides@yahoo.co.uk")
as necessary.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Found the following HTML validation problems:
piqp_model.html:305:1 (piqp_model.Rd:188): Warning: missing </ul> before </div>
piqp_model.html:140:1 (piqp_model.Rd:81): Warning: <h5> anchor "Usage" already defined
piqp_model.html:146:1 (piqp_model.Rd:85): Warning: <h5> anchor "Returns" already defined
piqp_model.html:163:1 (piqp_model.Rd:94): Warning: <h5> anchor "Usage" already defined
piqp_model.html:178:1 (piqp_model.Rd:107): Warning: <h5> anchor "Arguments" already defined
piqp_model.html:221:1 (piqp_model.Rd:140): Warning: <h5> anchor "Usage" already defined
piqp_model.html:237:1 (piqp_model.Rd:150): Warning: <h5> anchor "Usage" already defined
piqp_model.html:253:1 (piqp_model.Rd:160): Warning: <h5> anchor "Usage" already defined
piqp_model.html:259:1 (piqp_model.Rd:164): Warning: <h5> anchor "Arguments" already defined
piqp_model.html:282:1 (piqp_model.Rd:177): Warning: <h5> anchor "Usage" already defined
piqp_model.html:288:1 (piqp_model.Rd:181): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Lars Van Cutsem <lars.vancutsem@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lars",
                    family = "Van Cutsem",
                    role = c("aut", "cre"),
                    email = "lars.vancutsem@hotmail.com")
as necessary.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Duncan",
                      family = "Garmonsway",
                      role = "ctb"),
               person(given = "Colin",
                      family = "Hirsch",
                      role = "cph"),
               person(given = "Daniel",
                      family = "Frey",
                      role = "cph"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Leonardo Egidi <legidi@units.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leonardo",
                      family = "Egidi",
                      role = c("aut", "cre"),
                      email = "legidi@units.it"),
               person(given = "Roberta",
                      family = "Pappadà",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Pauli",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘extract_col.Rd’ ‘na2empty.Rd’ ‘omit_na_cols.Rd’ ‘omit_na_rows.Rd’
    ‘pivot.R’ ‘pivot.Rd’ ‘utils.R’ ‘validate_col.Rd’
Maintainer: ‘Martin Stingl <martin.stingl@dfv.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Stingl",
                    role = c("aut", "cre"),
                    email = "martin.stingl@dfv.de")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:71:1 (inst/NEWS.Rd:36): Warning: missing </ul> before </div>
checkRd: (-1) get_pixels.Rd:27-29: Lost braces
    27 | if (interactive()) {
       |                    ^
Found the following HTML validation problems:
get_pixels.html:73:1 (get_pixels.Rd:29): Warning: missing </ul> before </div>
checkRd: (-1) sprinkle_colnames.Rd:26-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sprinkle_colnames.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:63-68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:69-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:74-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:78-83: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
chain.html:46:1 (chain.Rd:10): Warning: missing </ul> before </div>
compoundAssignment.html:47:1 (compoundAssignment.Rd:10): Warning: missing </ul> before </div>
knit_print.dust.html:59:1 (knit_print.dust.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_DQC.html:60:1 (add_DQC.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eun-Kyung",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "lee.eunk@gmail.com"),
               person(given = "Hye-sun",
                      family = "Cho",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
needs_compile.html:48:1 (needs_compile.Rd:11): Warning: missing </ul> before </div>
pkg_has_src.html:46:1 (pkg_has_src.Rd:10): Warning: missing </ul> before </div>
pkg_links_to_rcpp.html:48:1 (pkg_links_to_rcpp.Rd:13): Warning: missing </ul> before </div>
without_compiler.html:54:1 (without_compiler.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
call_with_callback.html:57:1 (call_with_callback.Rd:15): Warning: missing </ul> before </div>
cmc__update_replica_pkgs.html:50:1 (cmc__update_replica_pkgs.Rd:12): Warning: missing </ul> before </div>
cmc__update_replica_rds.html:54:1 (cmc__update_replica_rds.Rd:14): Warning: missing </ul> before </div>
parse_installed.html:157:1 (parse_installed.Rd:85): Warning: missing </ul> before </div>
Found the following HTML validation problems:
assert_that.html:75:1 (assert_that.Rd:28): Warning: missing </ul> before </div>
collapse.html:52:1 (collapse.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Found the following HTML validation problems:
as_pkgdown.html:52:1 (as_pkgdown.Rd:13): Warning: missing </ul> before </div>
build_favicons.html:60:1 (build_favicons.Rd:12): Warning: missing </ul> before </div>
build_redirects.html:67:1 (build_redirects.Rd:13): Warning: missing </ul> before </div>
build_site_github_pages.html:93:1 (build_site_github_pages.Rd:30): Warning: missing </ul> before </div>
check_pkgdown.html:68:1 (check_pkgdown.Rd:13): Warning: missing </ul> before </div>
clean.html:58:1 (clean.Rd:17): Warning: missing </ul> before </div>
deploy_site_github.html:113:1 (deploy_site_github.Rd:44): Warning: missing </ul> before </div>
deploy_to_branch.html:91:1 (deploy_to_branch.Rd:39): Warning: missing </ul> before </div>
preview_site.html:58:1 (preview_site.Rd:15): Warning: missing </ul> before </div>
render_page.html:86:1 (render_page.Rd:32): Warning: missing </ul> before </div>
Found the following HTML validation problems:
download_files_with_md5_mismatch.html:63:1 (download_files_with_md5_mismatch.Rd:21): Warning: missing </ul> before </div>
make_pgk_cache_subdir_for_all_relative_files.html:50:1 (make_pgk_cache_subdir_for_all_relative_files.Rd:12): Warning: missing </ul> before </div>
make_pgk_cache_subdir_for_relative_file.html:50:1 (make_pgk_cache_subdir_for_relative_file.Rd:12): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘buildPackageGraph.Rd’ ‘collectFunNames.Rd’ ‘functions.r’
    ‘plotPackageGraph.Rd’ ‘utils.r’
Found the following HTML validation problems:
check_dep_version.html:51:1 (check_dep_version.Rd:13): Warning: missing </ul> before </div>
check_suggested.html:54:1 (check_suggested.Rd:14): Warning: missing </ul> before </div>
is_dev_package.html:47:1 (is_dev_package.Rd:10): Warning: missing </ul> before </div>
load_code.html:51:1 (load_code.Rd:12): Warning: missing </ul> before </div>
load_data.html:46:1 (load_data.Rd:10): Warning: missing </ul> before </div>
load_dll.html:46:1 (load_dll.Rd:10): Warning: missing </ul> before </div>
run_pkg_hook.html:52:1 (run_pkg_hook.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Meta-Lina Spohn <metalina.spohn@stat.math.ethz.ch>’

The Description field contains
  Michel et al. (2021) <arXiv:2109.10150>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Francois Deslandes <francois.deslandes@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jade",
                      family = "Giguelay",
                      role = "aut"),
               person(given = "Francois",
                      family = "Deslandes",
                      role = "cre",
                      email = "francois.deslandes@inra.fr"))
as necessary.
Found the following HTML validation problems:
auc_integrate.html:94:1 (auc_integrate.Rd:42): Warning: missing </ul> before </div>
print.PKNCAconc.html:74:1 (print.PKNCAconc.Rd:29): Warning: missing </ul> before </div>
print.PKNCAdata.html:51:1 (print.PKNCAdata.Rd:12): Warning: missing </ul> before </div>
summary.PKNCAdata.html:53:1 (summary.PKNCAdata.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
analytical_eqn_wrapper.html:54:1 (analytical_eqn_wrapper.Rd:14): Warning: missing </ul> before </div>
calc_dydP.html:58:1 (calc_dydP.Rd:16): Warning: missing </ul> before </div>
check_iov_specification.html:57:1 (check_iov_specification.Rd:14): Warning: missing </ul> before </div>
check_mixture_model.html:50:1 (check_mixture_model.Rd:12): Warning: missing </ul> before </div>
check_obs_input.html:48:1 (check_obs_input.Rd:12): Warning: missing </ul> before </div>
create_event_table.html:88:1 (create_event_table.Rd:36): Warning: missing </ul> before </div>
get_fixed_parameters.html:49:1 (get_fixed_parameters.Rd:10): Warning: missing </ul> before </div>
get_t_obs_from_regimen.html:73:1 (get_t_obs_from_regimen.Rd:27): Warning: missing </ul> before </div>
is_newer_package.html:52:1 (is_newer_package.Rd:13): Warning: missing </ul> before </div>
lower_triangle_mat_size.html:46:1 (lower_triangle_mat_size.Rd:10): Warning: missing </ul> before </div>
parse_obs_types.html:54:1 (parse_obs_types.Rd:16): Warning: missing </ul> before </div>
shift_state_indices.html:52:1 (shift_state_indices.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Jaki <jaki.thomas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Jaki",
                      role = c("aut", "cre"),
                      email = "jaki.thomas@gmail.com"),
               person(given = c("Martin", "J."),
                      family = "Wolfsegger",
                      role = "aut",
                      email = "wolfseggerm@gmx.at"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kyun-Seop",
                      family = "Bae",
                      role = c("aut", "cre"),
                      email = "k@acr.kr"),
               person(given = c("Jee", "Eun"),
                      family = "Lee",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
getsubs.html:46:1 (getsubs.Rd:10): Warning: missing </ul> before </div>
mk_runlabel.html:51:1 (mk_runlabel.Rd:12): Warning: missing </ul> before </div>
perc.permutation.html:50:1 (perc.permutation.Rd:12): Warning: missing </ul> before </div>
perc.rank.html:50:1 (perc.rank.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Nan-Hung Hsieh <d99622005@ntu.edu.tw>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
pksim.html:65:1 (pksim.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Davi Castro-Tavares <davi.tavares@leibniz-zmt.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Erick Marroquin <ericksuhel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erick",
                    family = "Marroquin",
                    role = c("aut", "cre"),
                    email = "ericksuhel@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘User_manual_for_planningML.Rmd’ using rmarkdown

Quitting from User_manual_for_planningML.Rmd:161-165 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `auc()`:
! length(x) == length(unique(x)) is not TRUE
---
Backtrace:
    ▆
 1. └─planningML::samplesize(...)
 2.   └─base::replicate(...)
 3.     └─base::sapply(...)
 4.       └─base::lapply(X = X, FUN = FUN, ...)
 5.         └─planningML (local) FUN(X[[i]], ...)
 6.           └─planningML (local) HCT.simulation(...)
 7.             └─MESS::auc(x = 1 - TNR.grid, y = TPR.grid, type = "spline")
 8.               └─base::stopifnot(length(x) == length(unique(x)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'User_manual_for_planningML.Rmd' failed with diagnostics:
length(x) == length(unique(x)) is not TRUE
--- failed re-building ‘User_manual_for_planningML.Rmd’

SUMMARY: processing the following file failed:
  ‘User_manual_for_planningML.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Dan Kelley <Dan.Kelley@Dal.Ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Kelley",
                      role = c("aut", "cre"),
                      email = "Dan.Kelley@Dal.Ca"),
               person(given = "Frank",
                      family = "Schmitt",
                      role = "aut",
                      email = "frankschmitt@gmx.de"))
as necessary.
Found the following HTML validation problems:
check.tokens.html:50:1 (check.tokens.Rd:12): Warning: missing </ul> before </div>
sub-sub-plan-method.html:59:1 (sub-sub-plan-method.Rd:16): Warning: missing </ul> before </div>
sub-subset-plan-method.html:63:1 (sub-subset-plan-method.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
PhotosynTuzet.html:70:1 (PhotosynTuzet.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Yves Rozenholc <yves.rozenholc@parisdescartes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yves",
                      family = "Rozenholc",
                      role = c("aut", "cre"),
                      email = "yves.rozenholc@parisdescartes.fr"),
               person(given = "Nicolas",
                      family = "Pécuchet",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Laurent-Puig",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘P2Run.csv’ ‘P2Run.html’ ‘P2Run.png’
Found the following HTML validation problems:
check_plate_input.html:50:1 (check_plate_input.Rd:12): Warning: missing </ul> before </div>
is_1536.html:46:1 (is_1536.Rd:10): Warning: missing </ul> before </div>
plate_effect.html:52:1 (plate_effect.Rd:12): Warning: missing </ul> before </div>
plate_map_multiple.html:51:1 (plate_map_multiple.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) one_design.Rd:125-126: Lost braces
   125 | function serves for the purpose of spot-testing for any pre-specified {n,
       |                                                                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘VDJ_build.R’
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson",
                      role = c("aut", "cre"),
                      email = "alec_stephenson@hotmail.com"),
               person(given = "Jeff",
                      family = "Sonas.",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_season_form.R’
Maintainer: ‘JungJun Lee <ljjoj@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "JungJun",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "ljjoj@korea.ac.kr"),
               person(given = "Jae-Hwan",
                      family = "Jhong",
                      role = "aut"),
               person(given = "Young-Rae",
                      family = "Cho",
                      role = "aut"),
               person(given = "SungHwan",
                      family = "Kim",
                      role = "aut"),
               person(given = "Ja-yong",
                      family = "Koo",
                      role = "aut"))
as necessary.
Maintainer: ‘Jason Sinnwell <sinnwell.jason@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J"),
                      family = "Schaid",
                      role = "aut"),
               person(given = "Jason",
                      family = "Sinnwell",
                      role = "cre",
                      email = "sinnwell.jason@mayo.edu"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pleiotest.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
xrsx_xrsy.html:58:1 (xrsx_xrsy.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.plfd.html:51:1 (print.plfd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dhammapal Bharne <dhammapalb@uohyd.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dhammapal",
                      family = "Bharne",
                      role = c("aut", "cre"),
                      email = "dhammapalb@uohyd.ac.in"),
               person(given = "Vaibhav",
                      family = "Vindal",
                      role = "aut"))
as necessary.
Maintainer: ‘Robert B. Gramacy <rbg@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "B."),
                    family = "Gramacy",
                    role = c("aut", "cre"),
                    email = "rbg@vt.edu")
as necessary.

The Description field contains
  (PL) following Gramacy & Polson (2011) <arXiv:0909.5262>.  The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
'library' or 'require' call not declared from: ‘MASS’
Found the following HTML validation problems:
set_pliman_viewer.html:46:1 (set_pliman_viewer.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) check_hwe.Rd:103: Lost braces; missing escapes or markup?
   103 | {'ALL', 'AFF', 'UNAFF', 'ALL(QT)', 'ALL(NP)'}), A1 (Allele 1; usually minor),
       | ^
Found the following HTML validation problems:
testNumerics.html:60:1 (testNumerics.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Jonathan P. Weeks <weeksjp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonathan", "P."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeksjp@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhi Wei <zhiwei04@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhi", "Wei", "&", "Wenguang"),
                      family = "Sun",
                      role = "aut"),
               person(given = "Zhi",
                      family = "Wei",
                      role = "cre",
                      email = "zhiwei04@gmail.com"))
as necessary.
Found the following HTML validation problems:
fitted.PLmod.html:51:1 (fitted.PLmod.Rd:12): Warning: missing </ul> before </div>
fixef.PLmod.html:51:1 (fixef.PLmod.Rd:12): Warning: missing </ul> before </div>
iterPlot.html:46:1 (iterPlot.Rd:10): Warning: missing </ul> before </div>
plot.PLmod.html:51:1 (plot.PLmod.Rd:12): Warning: missing </ul> before </div>
predict.PLmod.html:55:1 (predict.PLmod.Rd:14): Warning: missing </ul> before </div>
print.PLmod.html:55:1 (print.PLmod.Rd:14): Warning: missing </ul> before </div>
print.summary.PLmod.html:55:1 (print.summary.PLmod.Rd:14): Warning: missing </ul> before </div>
ranef.PLmod.html:51:1 (ranef.PLmod.Rd:12): Warning: missing </ul> before </div>
residuals.PLmod.html:51:1 (residuals.PLmod.Rd:12): Warning: missing </ul> before </div>
simulate.PLmod.html:51:1 (simulate.PLmod.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plmm_fit.html:128:1 (plmm_fit.Rd:60): Warning: missing </ul> before </div>
Maintainer: ‘Euloge Clovis Kenne Pagui <kenne@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Euloge", "Clovis", "Kenne"),
                      family = "Pagui",
                      role = c("aut", "cre"),
                      email = "kenne@stat.unipd.it"),
               person(given = "Antonio",
                      family = "Canale",
                      role = "aut"),
               person(given = "Alan",
                      family = "Genz",
                      role = "ctb"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "ctb"))
as necessary.
checkRd: (-1) delta2a.Rd:21: Lost braces; missing escapes or markup?
    21 | delta_k = log(a_k - a_{k+1})
       |                       ^
checkRd: (-1) ordprob.mple.Rd:29: Lost braces
    29 | logical. If code{TRUE} all the q variable are assumed to have the same mean.
       |                 ^
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot3D.html:40:1 (plot3D.Rd:73): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Olivia Cheronet <cheronetolivia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olivia",
                    family = "Cheronet",
                    role = c("aut", "cre"),
                    email = "cheronetolivia@gmail.com")
as necessary.
Found the following HTML validation problems:
print.ggplotdap.html:51:1 (print.ggplotdap.Rd:12): Warning: missing </ul> before </div>
print.plotdap.html:51:1 (print.plotdap.Rd:12): Warning: missing </ul> before </div>
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(plotDK)
  > 
  > test_check("plotDK")
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plotDK.R:67:5'): The returned plot has the correct labels ────
  c("x", "y", "group", "subgroup", "text", "fill") (`actual`) and names(labels) (`expected`) don't have the same values.
  * Only in `actual`: "x", "y", "group", "subgroup", "text", "fill"
  
  ── Failure ('test-plotDK.R:72:5'): The returned plot has the correct labels ────
  labels$fill not equal to "test_label".
  target is NULL, current is character
  ── Failure ('test-plotDK.R:81:5'): The returned plot has the correct labels ────
  labels$fill not equal to "fill".
  target is NULL, current is character
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 48 ]
  Error: Test failures
  Execution halted
checkRd: (-1) add_bars.Rd:15: Lost braces
    15 | When \\code{y0} is not specified, the lowest value of the y-axis is used.}
       |            ^
checkRd: (-1) add_bars.Rd:24: Lost braces
    24 | \\code{\\link[graphics]{par}}.}
       |       ^
checkRd: (-1) add_bars.Rd:24: Lost braces
    24 | \\code{\\link[graphics]{par}}.}
       |                        ^
checkRd: (-1) plotluck.Rd:129: Lost braces
   129 |  in factors are are shown as a special factor level code{"?"}. They can be
       |                                                         ^
Found the following HTML validation problems:
add_fun.html:56:1 (add_fun.Rd:15): Warning: missing </ul> before </div>
as.widget.html:52:1 (as.widget.Rd:12): Warning: missing </ul> before </div>
geom2trace.html:57:1 (geom2trace.Rd:14): Warning: missing </ul> before </div>
get_figure.html:50:1 (get_figure.Rd:12): Warning: missing </ul> before </div>
plotly-shiny.html:92:1 (plotly-shiny.Rd:43): Warning: missing </ul> before </div>
plotly_empty.html:46:1 (plotly_empty.Rd:10): Warning: missing </ul> before </div>
print.api.html:51:1 (print.api.Rd:12): Warning: missing </ul> before </div>
print.api_grid.html:51:1 (print.api_grid.Rd:12): Warning: missing </ul> before </div>
print.api_grid_local.html:51:1 (print.api_grid_local.Rd:12): Warning: missing </ul> before </div>
print.api_plot.html:51:1 (print.api_plot.Rd:12): Warning: missing </ul> before </div>
print.kaleidoScope.html:51:1 (print.kaleidoScope.Rd:12): Warning: missing </ul> before </div>
to_basic.html:69:1 (to_basic.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plotmo.misc.html:221:1 (plotmo.misc.Rd:103): Warning: missing </ul> before </div>
Maintainer: ‘Stephen Milborrow <milbo@sonic.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Milborrow",
                    role = c("aut", "cre"),
                    email = "milbo@sonic.net")
as necessary.
Maintainer: ‘Joaquin Bienvenido Ordieres Mere <j.ordieres@upm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Javier", "Celigueta"),
                      family = "Mu<b1>oz",
                      role = "aut",
                      email = "b1"),
               person(given = c("Joaquin", "Bienvenido", "Ordieres"),
                      family = "Mere",
                      role = "cre",
                      email = "j.ordieres@upm.es"))
as necessary.
Maintainer: ‘Yao Geng <gengyao0103521@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yao",
                      family = "Geng",
                      role = "cre",
                      email = "gengyao0103521@qq.com"))
as necessary.
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein-package.Rd:20: Lost braces
    20 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Found the following HTML validation problems:
direct_label.html:77:1 (direct_label.Rd:31): Warning: missing </ul> before </div>
roc_key.html:54:1 (roc_key.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Found the following HTML validation problems:
ClustreePlotAtomic.html:155:1 (ClustreePlotAtomic.Rd:83): Warning: missing </ul> before </div>
DensityHistoPlotAtomic.html:269:1 (DensityHistoPlotAtomic.Rd:155): Warning: missing </ul> before </div>
GSEAPlotAtomic.html:147:1 (GSEAPlotAtomic.Rd:73): Warning: missing </ul> before </div>
LinePlotSingle.html:292:1 (LinePlotSingle.Rd:166): Warning: missing </ul> before </div>
PieChartAtomic.html:179:1 (PieChartAtomic.Rd:97): Warning: missing </ul> before </div>
RidgePlotAtomic.html:237:1 (RidgePlotAtomic.Rd:135): Warning: missing </ul> before </div>
SplitBarPlotAtomic.html:247:1 (SplitBarPlotAtomic.Rd:139): Warning: missing </ul> before </div>
common_args.html:251:1 (common_args.Rd:125): Warning: missing </ul> before </div>
dot-anno_ggcat.html:110:1 (dot-anno_ggcat.Rd:50): Warning: missing </ul> before </div>
dot-compute_velocity_on_grid.html:88:1 (dot-compute_velocity_on_grid.Rd:36): Warning: missing </ul> before </div>
heatmap-anno.html:258:1 (heatmap-anno.Rd:203): Warning: missing </ul> before </div>
heatmap-layer.html:133:1 (heatmap-layer.Rd:75): Warning: missing </ul> before </div>
validate_common_args.html:217:1 (validate_common_args.Rd:123): Warning: missing </ul> before </div>
Maintainer: ‘January Weiner <january.weiner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "January",
                    family = "Weiner",
                    role = c("aut", "cre"),
                    email = "january.weiner@gmail.com")
as necessary.
Maintainer: ‘Felipe Queiroz <ffelipeq@outlook.com>’

The Description field contains
  are described in Queiroz and Ferrari (2022) <arXiv:2202.01697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ana Lopez-Cheda <ana.lopez.cheda@udc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("German", "Aneiros"),
                      family = "Perez",
                      role = "aut"),
               person(given = "Ana",
                      family = "Lopez-Cheda",
                      role = c("aut", "cre"),
                      email = "ana.lopez.cheda@udc.es"))
as necessary.
Maintainer: ‘Ghislain Durif <gd.dev@libertymail.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne-Laure",
                      family = "Boulesteix",
                      role = "aut",
                      email = "boulesteix@ibe.med.uni-muenchen.de"),
               person(given = "Ghislain",
                      family = "Durif",
                      role = c("aut", "cre"),
                      email = "gd.dev@libertymail.net"),
               person(given = "Sophie",
                      family = "Lambert-Lacroix",
                      role = "aut",
                      email = "sophie.lambert-lacroix@univ-grenoble-alpes.fr"),
               person(given = "Julie",
                      family = "Peyre",
                      role = "aut",
                      email = "Julie.Peyre@univ-grenoble-alpes.fr"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut",
                      email = "k.strimmer@imperial.ac.uk"))
as necessary.
Maintainer: ‘Shunyao Wu <wushunyao@qdu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shunyao",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wushunyao@qdu.edu.cn"),
               person(given = "Qi",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Zhiruo",
                      family = "Li",
                      role = "aut"),
               person(given = "Hua",
                      family = "Liang",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PLSiMCpp.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
multi_predict.html:74:1 (multi_predict.Rd:29): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cbh.html:54:1 (cbh.Rd:14): Warning: missing </ul> before </div>
find_family.html:46:1 (find_family.Rd:10): Warning: missing </ul> before </div>
formula_setup.html:96:1 (formula_setup.Rd:44): Warning: missing </ul> before </div>
lasso_gam_loop.html:91:1 (lasso_gam_loop.Rd:39): Warning: missing </ul> before </div>
meandist.html:46:1 (meandist.Rd:10): Warning: missing </ul> before </div>
nzeros.html:46:1 (nzeros.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_GQI.html:55:1 (get_GQI.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eva", "Herrmann;", "R", "interface", "etc", "by", "Martin"),
                      family = "Maechler",
                      role = "aut",
                      email = "eherrmann@mathematik.tu-darmstadt.de",
                      comment = "C original"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "cre",
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plug.R’
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
add_listener.html:54:1 (add_listener.Rd:10): Warning: missing </ul> before </div>
changed.html:46:1 (changed.Rd:8): Warning: missing </ul> before </div>
is_paused.html:46:1 (is_paused.Rd:8): Warning: missing </ul> before </div>
notify_listeners.html:50:1 (notify_listeners.Rd:10): Warning: missing </ul> before </div>
proxy_bindings.html:50:1 (proxy_bindings.Rd:10): Warning: missing </ul> before </div>
remove_listener.html:53:1 (remove_listener.Rd:12): Warning: missing </ul> before </div>
shape_changed.html:50:1 (shape_changed.Rd:10): Warning: missing </ul> before </div>
unpause.html:46:1 (unpause.Rd:8): Warning: missing </ul> before </div>
variable_names.html:46:1 (variable_names.Rd:8): Warning: missing </ul> before </div>
checkRd: (-1) plu_more.Rd:16: Lost braces; missing escapes or markup?
    16 | Additional arguments are replaced with "{n} more".
       |                                         ^
Maintainer: ‘Michael Doyle <michaeledoyle7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Doyle",
                    role = c("aut", "cre"),
                    email = "michaeledoyle7@gmail.com")
as necessary.
Found the following HTML validation problems:
amv_dim.html:46:1 (amv_dim.Rd:10): Warning: missing </ul> before </div>
as.list.split.html:51:1 (as.list.split.Rd:12): Warning: missing </ul> before </div>
compact.html:46:1 (compact.Rd:10): Warning: missing </ul> before </div>
defaults.html:50:1 (defaults.Rd:12): Warning: missing </ul> before </div>
dims.html:46:1 (dims.Rd:10): Warning: missing </ul> before </div>
empty.html:46:1 (empty.Rd:10): Warning: missing </ul> before </div>
get-split.html:55:1 (get-split.Rd:14): Warning: missing </ul> before </div>
indexed_array.html:51:1 (indexed_array.Rd:15): Warning: missing </ul> before </div>
indexed_df.html:54:1 (indexed_df.Rd:14): Warning: missing </ul> before </div>
join.keys.html:56:1 (join.keys.Rd:15): Warning: missing </ul> before </div>
loop_apply.html:55:1 (loop_apply.Rd:14): Warning: missing </ul> before </div>
nunique.html:46:1 (nunique.Rd:10): Warning: missing </ul> before </div>
print.split.html:51:1 (print.split.Rd:12): Warning: missing </ul> before </div>
quickdf.html:48:1 (quickdf.Rd:10): Warning: missing </ul> before </div>
reduce_dim.html:46:1 (reduce_dim.Rd:10): Warning: missing </ul> before </div>
split_labels.html:50:1 (split_labels.Rd:12): Warning: missing </ul> before </div>
tryapply.html:56:1 (tryapply.Rd:15): Warning: missing </ul> before </div>
unrowname.html:46:1 (unrowname.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.PMCMR.html:53:1 (print.PMCMR.Rd:12): Warning: missing </ul> before </div>
print.gesdTest.html:53:1 (print.gesdTest.Rd:12): Warning: missing </ul> before </div>
print.powerOneWayPMCMR.html:54:1 (print.powerOneWayPMCMR.Rd:12): Warning: missing </ul> before </div>
print.trendPMCMR.html:53:1 (print.trendPMCMR.Rd:12): Warning: missing </ul> before </div>
summary.gesdTest.html:51:1 (summary.gesdTest.Rd:12): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:241:1 (inst/NEWS.Rd:134): Warning: missing </ul> before </div>
NEWS.html:122:1 (inst/NEWS.Rd:67): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:155:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:172:1 (inst/NEWS.Rd:99): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:191:1 (inst/NEWS.Rd:110): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:207:1 (inst/NEWS.Rd:118): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:223:1 (inst/NEWS.Rd:126): Warning: <h4> anchor "NEW-FEATURES" already defined
checkRd: (-1) PMCMR-deprecated.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘earned_value.R’ ‘planned_value.R’ ‘pmevR6.R’
Found the following HTML validation problems:
ev.html:137:1 (ev.Rd:91): Warning: <h5> anchor "Usage" already defined
ev.html:153:1 (ev.Rd:101): Warning: <h5> anchor "Usage" already defined
ev.html:159:1 (ev.Rd:105): Warning: <h5> anchor "Arguments" already defined
get_planned_value.html:51:1 (get_planned_value.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Johan Dahlin <uni@johandahlin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johan",
                    family = "Dahlin",
                    role = c("aut", "cre"),
                    email = "uni@johandahlin.com")
as necessary.
checkRd: (-1) pmledecon.Rd:113: Lost braces; missing escapes or markup?
   113 |     likelihood less than $10^{-10}$ are replaced by $10^{-10}$.
       |                              ^
checkRd: (-1) pmledecon.Rd:113: Lost braces; missing escapes or markup?
   113 |     likelihood less than $10^{-10}$ are replaced by $10^{-10}$.
       |                                                         ^
Maintainer: ‘Dmitriy Bolotov <rpmmlsupport@softwareag.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tridivesh",
                      family = "Jena",
                      role = "aut"),
               person(given = c("Wen", "Ching"),
                      family = "Lin",
                      role = "aut"),
               person(given = "Dmitriy",
                      family = "Bolotov",
                      role = c("aut", "cre"),
                      email = "rpmmlsupport@softwareag.com"))
as necessary.
Maintainer: ‘Paul H. Lee <honglee@graduate.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "H."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "honglee@graduate.hku.hk"),
               person(given = c("Philip", "L.", "H."),
                      family = "Yu",
                      role = "aut"))
as necessary.
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                   ^
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                              ^
Maintainer: ‘Alexander Davis <ajdavis2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Davis",
                    role = c("aut", "cre"),
                    email = "ajdavis2@mdanderson.org")
as necessary.
Found the following HTML validation problems:
check_run_stage_args.html:118:1 (check_run_stage_args.Rd:61): Warning: missing </ul> before </div>
gibbs_step_err.html:52:1 (gibbs_step_err.Rd:12): Warning: missing </ul> before </div>
new_sample_err.html:55:1 (new_sample_err.Rd:14): Warning: missing </ul> before </div>
particle_select_err.html:56:1 (particle_select_err.Rd:15): Warning: missing </ul> before </div>
set_epsilon.html:51:1 (set_epsilon.Rd:12): Warning: missing </ul> before </div>
set_mix.html:51:1 (set_mix.Rd:12): Warning: missing </ul> before </div>
set_proposal.html:61:1 (set_proposal.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
Maintainer: ‘Jake Lawlor <jakealawlor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Lawlor",
                    role = c("aut", "cre"),
                    email = "jakealawlor@gmail.com")
as necessary.
Maintainer: ‘Hector Haffenden <haffendenh@cardiff.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hector",
                    family = "Haffenden",
                    role = c("aut", "cre"),
                    email = "haffendenh@cardiff.ac.uk")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
pocket_modify_bulk_.html:62:1 (pocket_modify_bulk_.Rd:18): Warning: missing </ul> before </div>
pocket_post_.html:58:1 (pocket_post_.Rd:16): Warning: missing </ul> before </div>
warn_for_failures_.html:46:1 (warn_for_failures_.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Dabao Zhang <zhangdb@purdue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dabao",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangdb@purdue.edu"),
               person(given = "Zhongli",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Zeyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yu-ting",
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘"Brewer, Ben (arb5mt)" <arb5mt@virginia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nolan", "A."),
                      family = "Wages",
                      role = "aut"),
               person(family = "\"Brewer",
                      role = "cre"),
               person(family = "Ben\"",
                      role = "cre",
                      email = "arb5mt@virginia.edu",
                      comment = "arb5mt"))
as necessary.
Maintainer: ‘Markus Boenn <markus.boenn.sf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Boenn",
                    role = c("aut", "cre"),
                    email = "markus.boenn.sf@gmail.com",
                    comment = "State Office for Consumer Protection Saxony-Anhalt, Germany")
as necessary.
Maintainer: ‘Martina Mincheva <m.z.mincheva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jianqing",
                      family = "Fan",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Liao",
                      role = "aut"),
               person(given = "Martina",
                      family = "Mincheva",
                      role = c("aut", "cre"),
                      email = "m.z.mincheva@gmail.com"))
as necessary.
Maintainer: ‘Michaela Dvorzak <m.dvorzak@gmx.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniela",
                    family = "Witten",
                    role = c("aut", "cre"),
                    email = "dwitten@u.washington.edu")
as necessary.
Found the following HTML validation problems:
print.action_levels.html:51:1 (print.action_levels.Rd:12): Warning: missing </ul> before </div>
print.ptblank_agent.html:56:1 (print.ptblank_agent.Rd:14): Warning: missing </ul> before </div>
print.ptblank_informant.html:56:1 (print.ptblank_informant.Rd:14): Warning: missing </ul> before </div>
print.ptblank_multiagent.html:56:1 (print.ptblank_multiagent.Rd:14): Warning: missing </ul> before </div>
print.ptblank_multiagent_report.long.html:56:1 (print.ptblank_multiagent_report.long.Rd:14): Warning: missing </ul> before </div>
print.ptblank_tbl_scan.html:56:1 (print.ptblank_tbl_scan.Rd:14): Warning: missing </ul> before </div>
print.read_fn.html:51:1 (print.read_fn.Rd:12): Warning: missing </ul> before </div>
print.tbl_store.html:51:1 (print.tbl_store.Rd:12): Warning: missing </ul> before </div>
print.x_list_i.html:51:1 (print.x_list_i.Rd:12): Warning: missing </ul> before </div>
print.x_list_n.html:52:1 (print.x_list_n.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Paul Evangelista <paul.evangelista@westpoint.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Paul",
                      family = "Evangelista",
                      role = "aut",
                      email = "paul.evangelista@westpoint.edu"),
               person(given = "Dave",
                      family = "Beskow\"",
                      role = "aut",
                      email = "david.beskow@westpoint.edu"),
               person(given = "Paul",
                      family = "Evangelista",
                      role = "cre",
                      email = "paul.evangelista@westpoint.edu"))
as necessary.
Maintainer: ‘Patrick Schmidt <pschmidte@gmail.com>’

The Description field contains
  Katzfuss and Gneiting (2015) <arXiv:1506.01917> for more details on the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) estimate.functional.Rd:34: Lost braces; missing escapes or markup?
    34 | \item{bw}{function describing bandwidth selection (see ?gmm for alternatives). Standard is that the bandwidth depends on the sample length $T$ by $m(T)=T^{1/5}$.}
       |                                                                                                                                                           ^
Maintainer: ‘Marieke van der Maaten-Theunissen <marieke.theunissen@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marieke",
                      family = "van der Maaten-Theunissen",
                      role = c("aut", "cph", "cre", "trl"),
                      email = "marieke.theunissen@tu-dresden.de"),
               person(given = "Ernst",
                      family = "van der Maaten",
                      role = c("aut", "trl")),
               person(given = "Gottfried",
                      family = "Jetsckhe",
                      role = c("aut", "trl")),
               person(given = "Mario",
                      family = "Trouillier",
                      role = c("aut", "trl")))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rachel",
                      family = "Nordgren",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yiran",
                      family = "Hu",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘David Kahle <david@kahle.io>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) pois.fe.robust.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pois.fe.robust.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pois.fe.robust.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

The Description field contains
  bag-of-words-based topic modeling) (Cortes, (2018) <arXiv:1811.01908>),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.poismf.html:51:1 (print.poismf.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yaru",
                      family = "Shi",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Toby Kenney <tkenney@mathstat.dal.ca>’

The Description field contains
  Kenney, T. Huang, H. Gu (2019) <arXiv:1904.11745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Pechel Cactcha <davidpechel@uy1.uninet.cm>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Pechel"),
                      family = "Cactcha",
                      role = c("aut", "cre"),
                      email = "davidpechel@uy1.uninet.cm"),
               person(given = c("Laure", "Pauline"),
                      family = "Fotso",
                      role = "aut"),
               person(given = c("Celestin", "C"),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.
Maintainer: ‘Drew Linzer <drew@votamatic.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Drew",
                      family = "Linzer",
                      role = c("aut", "cre"),
                      email = "drew@votamatic.org"),
               person(given = "Jeffrey",
                      family = "Lewis.",
                      role = "aut",
                      email = "jblewis@ucla.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) carcinoma.Rd:8: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:69: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pp_measures.Rd: diversity
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
create_dot_body.html:54:1 (create_dot_body.Rd:14): Warning: missing </ul> before </div>
export_graphviz.html:50:1 (export_graphviz.Rd:12): Warning: missing </ul> before </div>
print.policy_tree.html:51:1 (print.policy_tree.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Barry Edwards <barry.edwards@ucf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Barry",
                      family = "Edwards",
                      role = c("aut", "cre"),
                      email = "barry.edwards@ucf.edu"),
               person(given = "Philip",
                      family = "Pollock",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
available.imported.functions.html:172:1 (available.imported.functions.Rd:86): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.polite.html:51:1 (print.polite.Rd:12): Warning: missing </ul> before </div>
use_manners.html:50:1 (use_manners.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hiperfrac.R’ ‘rice.R’
Maintainer: ‘John D. Johnson <john.d.johnson@marquette.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "D."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "john.d.johnson@marquette.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘crosstab3way.Rmd’ using rmarkdown

Quitting from crosstab3way.Rmd:40-54 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    ▆
 1. └─ggplot2::labs(...)
 2.   └─ggplot2::class_labels(args)
 3.     └─S7::new_object(labels)
 4.       └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'crosstab3way.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘crosstab3way.Rmd’

--- re-building ‘crosstabs.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘crosstabs.Rmd’

--- re-building ‘toplines.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘toplines.Rmd’

SUMMARY: processing the following file failed:
  ‘crosstab3way.Rmd’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hits.R’ ‘size.R’ ‘utils.R’
Found the following HTML validation problems:
as.sparseMatrix.html:68:1 (as.sparseMatrix.Rd:29): Warning: missing </ul> before </div>
dotplot-method.html:70:1 (dotplot-method.Rd:28): Warning: missing </ul> before </div>
means-method.html:58:1 (means-method.Rd:18): Warning: missing </ul> before </div>
polmineR-defunct.html:49:1 (polmineR-defunct.Rd:14): Warning: missing </ul> before </div>
polmineR-generics.html:50:1 (polmineR-generics.Rd:14): Warning: missing </ul> before </div>
ranges.html:142:1 (ranges.Rd:90): Warning: missing </ul> before </div>
renamed.html:73:1 (renamed.Rd:40): Warning: missing </ul> before </div>
view.html:50:1 (view.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Conrad Burden <conrad.burden@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conrad",
                    family = "Burden",
                    role = c("aut", "cre"),
                    email = "conrad.burden@anu.edu.au")
as necessary.

The Description field contains
  Conrad J. Burden (2014) <arXiv:1406.2780>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
plot_polyregion.html:62:1 (plot_polyregion.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Roeland E. Voorrips <roeland.voorrips@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roeland", "E."),
                    family = "Voorrips",
                    role = c("aut", "cre"),
                    email = "roeland.voorrips@wur.nl")
as necessary.
Found the following HTML validation problems:
minor.html:52:1 (minor.Rd:12): Warning: missing </ul> before </div>
polyMatrix-mmult.html:53:1 (polyMatrix-mmult.Rd:16): Warning: missing </ul> before </div>
polyMatrix.apply.html:50:1 (polyMatrix.apply.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = c("with", "contribution", "by", "Kurt"),
                      family = "Hornik",
                      role = "aut"),
               person(given = "Georgi",
                      family = "Boshnakov",
                      role = "aut"),
               person(given = "Brian",
                      family = "Ripley.",
                      role = "aut"))
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Zwart <Alec.Zwart@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Zwart",
                    role = c("aut", "cre"),
                    email = "alec.zwart@csiro.au")
as necessary.
checkRd: (-1) inputData.Rd:94: Lost braces
    94 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) inputData.Rd:95: Lost braces
    95 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) preprocessData.Rd:81: Lost braces
    81 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) preprocessData.Rd:82: Lost braces
    82 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) stat_quantile_prob.Rd:14: Lost braces; missing escapes or markup?
    14 | Number {25, 50, 75}
       |        ^
Found the following HTML validation problems:
segMaker.html:58:1 (segMaker.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Norm Matloff <matloff@cs.ucdavis.edu>’

The Description field contains
  Matloff, and Pete Mohanty (<arXiv:1806.06850>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Baker <p.baker1@uq.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) calculateDIC.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculateDIC.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polySegratioMM-package.Rd:70-72: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘test-data.R’ ‘test-inits.R’ ‘test.bug’ ‘test.cmd’
Maintainer: ‘Peter Baker <p.baker1@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Baker",
                    role = c("aut", "cre"),
                    email = "p.baker1@uq.edu.au")
as necessary.
Maintainer: ‘Sourav Chatterjee <souravc@stanford.edu>’

The Description field contains
  Vidyasagar (2022) <arxiv:2209.07028>. The method is fully
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
condeptree.html:54:1 (condeptree.Rd:14): Warning: missing </ul> before </div>
outgoing.html:58:1 (outgoing.Rd:16): Warning: missing </ul> before </div>
xicorln.html:50:1 (xicorln.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Junghi Kim <junghikim0@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junghi",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "junghikim0@gmail.com"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Cyril Piou <cyril.piou@cirad.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pomic-package.Rd’:
    http://dx.doi.org/10.1016/j.ecolmodel.2009.05.003
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
checkRd: (-1) MLM_Model.Rd:31: Lost braces; missing escapes or markup?
    31 |   the weight vectors \bold{{w}^{i}} corresponds to class \eqn{i}{i}.
       |                                ^
checkRd: (-1) MLM_Model.Rd:33: Lost braces; missing escapes or markup?
    33 | We set \eqn{{\bold{{w}}^{h}} = 0} and the parameters to be learned are the weight vectors \bold{{w}^{i}}
       |                                                                                                     ^
Found the following HTML validation problems:
as_pomp.html:50:1 (as_pomp.Rd:13): Warning: missing </ul> before </div>
pStop.html:63:1 (pStop.Rd:30): Warning: missing </ul> before </div>
plot.html:162:1 (plot.Rd:95): Warning: missing </ul> before </div>
print.html:57:1 (print.Rd:19): Warning: missing </ul> before </div>
window.html:55:1 (window.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Gavin Douglas <gavinmdouglas@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forceLocus.Rd: forcePool
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Chris Salahub <chris.salahub@uwaterloo.ca>’

The Description field contains
  in Salahub and Olford (2023) <arXiv:2310.16600>. This package provides
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lech Kujawski <lech.kujawski@ug.edu.pl>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PooledMeanGroup-package.Rd’:
    \keyword{package, PMG, pooled mean group, dynamic  [TRUNCATED]
Found the following HTML validation problems:
heatmap-pairwisefst-method.html:148:1 (heatmap-pairwisefst-method.Rd:73): Warning: missing </ul> before </div>
is.countdata.html:46:1 (is.countdata.Rd:10): Warning: missing </ul> before </div>
is.fitted.graph.html:46:1 (is.fitted.graph.Rd:10): Warning: missing </ul> before </div>
is.fstats.html:46:1 (is.fstats.Rd:10): Warning: missing </ul> before </div>
is.graph.params.html:46:1 (is.graph.params.Rd:10): Warning: missing </ul> before </div>
is.pairwisefst.html:46:1 (is.pairwisefst.Rd:10): Warning: missing </ul> before </div>
is.pooldata.html:46:1 (is.pooldata.Rd:10): Warning: missing </ul> before </div>
plot-fitted.graph-method.html:51:1 (plot-fitted.graph-method.Rd:12): Warning: missing </ul> before </div>
plot-graph.params-method.html:51:1 (plot-graph.params-method.Rd:12): Warning: missing </ul> before </div>
show-countdata-method.html:47:1 (show-countdata-method.Rd:10): Warning: missing </ul> before </div>
show-fitted.graph-method.html:47:1 (show-fitted.graph-method.Rd:10): Warning: missing </ul> before </div>
show-fstats-method.html:47:1 (show-fstats-method.Rd:10): Warning: missing </ul> before </div>
show-graph.params-method.html:47:1 (show-graph.params-method.Rd:10): Warning: missing </ul> before </div>
show-pairwisefst-method.html:47:1 (show-pairwisefst-method.Rd:10): Warning: missing </ul> before </div>
show-pooldata-method.html:47:1 (show-pooldata-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
DBI-custom.html:105:1 (DBI-custom.Rd:37): Warning: missing </ul> before </div>
Pool-class.html:97:1 (Pool-class.Rd:44): Warning: missing </ul> before </div>
hooks.html:81:1 (hooks.Rd:44): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘getPrevalence.R’
Maintainer: ‘Stefano Nembrini <stefanonembrini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefano",
                    family = "Nembrini",
                    role = c("aut", "cre"),
                    email = "stefanonembrini@gmail.com")
as necessary.
Found the following HTML validation problems:
fisher.html:54:1 (fisher.Rd:14): Warning: missing </ul> before </div>
gaussianize.html:50:1 (gaussianize.Rd:12): Warning: missing </ul> before </div>
m_effective.html:46:1 (m_effective.Rd:10): Warning: missing </ul> before </div>
tippett.html:54:1 (tippett.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Chris Stubben <chris.stubben@hci.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Stubben",
                      role = c("aut", "cre"),
                      email = "chris.stubben@hci.utah.edu"),
               person(given = "Brook",
                      family = "Milligan",
                      role = "aut"),
               person(given = "Patrick",
                      family = "Nantel",
                      role = "aut"))
as necessary.
Running examples in ‘PopComm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: circle_plot
> ### Title: Plot Circular Ligand-Receptor Interaction Network
> ### Aliases: circle_plot
> 
> ### ** Examples
> 
> # Plot Circular Cell-Cell Interaction Network
> data(filtered_lr_eg)
> p <- circle_plot(filtered_lr_eg, edge_width = "count", show_self_interactions = TRUE)
Warning: edge attribute loop.angle contains NAs. Replacing with default value
Error in p[[type]][[name]][is.na(p[[type]][[name]])] <- i.default.values[[type]][[name]] : 
  replacement has length zero
Calls: circle_plot -> plot -> plot.igraph -> params
Execution halted
Found the following HTML validation problems:
design_summary.html:54:1 (design_summary.Rd:14): Warning: missing </ul> before </div>
log_prior_pdf.html:81:1 (log_prior_pdf.Rd:30): Warning: missing </ul> before </div>
median_hilow_poped.html:52:1 (median_hilow_poped.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Aki Jarl Laruson <akijarl@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aki", "Jarl", "Laruson;", "Floyd"),
                      family = "Reed",
                      role = "aut"),
               person(given = c("Aki", "Jarl"),
                      family = "Laruson",
                      role = "cre",
                      email = "akijarl@gmail.com"))
as necessary.
Maintainer: ‘Jiacheng Miao <jiacheng.miao@wisc.edu>’

The Description field contains
  (2023) <arXiv:2311.14220>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
bruvo.msn.html:198:1 (bruvo.msn.Rd:133): Warning: <h4> anchor "mlg.compute" already defined
plot_poppr_msn.html:247:1 (plot_poppr_msn.Rd:163): Warning: <h4> anchor "mlg.compute" already defined
poppr.msn.html:186:1 (poppr.msn.Rd:125): Warning: <h4> anchor "mlg.compute" already defined
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Golding",
                    role = c("aut", "cre"),
                    email = "nick.golding.research@gmail.com")
as necessary.
Maintainer: ‘"Mark C. Wheldon" <biostatmark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mark", "C."),
                      family = "Wheldon",
                      role = "aut"),
               person(given = c("\"Mark", "C."),
                      family = "Wheldon\"",
                      role = "cre",
                      email = "biostatmark@gmail.com"))
as necessary.
Found the following HTML validation problems:
map.build.html:147:1 (map.build.Rd:63): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Guillaume Chapron <gchapron@carnivoreconservation.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guillaume",
                    family = "Chapron",
                    role = c("aut", "cre"),
                    email = "gchapron@carnivoreconservation.org")
as necessary.
Maintainer: ‘Marios Batsaris <m.batsaris@aegean.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marios",
                    family = "Batsaris",
                    role = c("aut", "cre"),
                    email = "m.batsaris@aegean.gr")
as necessary.
Found the following HTML validation problems:
lifetab.html:263:1 (lifetab.Rd:183): Warning: <h3> anchor "ax" already defined
Found the following HTML validation problems:
internal.html:156:1 (internal.Rd:89): Warning: missing </ul> before </div>
Found the following HTML validation problems:
clean_plant_data.html:80:1 (clean_plant_data.Rd:30): Warning: missing </ul> before </div>
clean_rodent_data.html:81:1 (clean_rodent_data.Rd:27): Warning: missing </ul> before </div>
load_datafile.html:82:1 (load_datafile.Rd:34): Warning: missing </ul> before </div>
ndvi.html:77:1 (ndvi.Rd:31): Warning: missing </ul> before </div>
phenocam.html:51:1 (phenocam.Rd:13): Warning: missing </ul> before </div>
print.html:51:1 (print.Rd:13): Warning: missing </ul> before </div>
weather.html:71:1 (weather.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Esam Mahdi <emahdi2012@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Esam",
                    family = "Mahdi",
                    role = c("aut", "cre"),
                    email = "emahdi2012@gmail.com")
as necessary.
'::' or ':::' import not declared from: ‘RPESE’
'library' or 'require' calls not declared from:
  ‘TTR’ ‘doMC’
Found the following HTML validation problems:
CCCgarch.MM.html:56:1 (CCCgarch.MM.Rd:14): Warning: missing </ul> before </div>
extract_risk.html:62:1 (extract_risk.Rd:18): Warning: missing </ul> before </div>
name.replace.html:46:1 (name.replace.Rd:10): Warning: missing </ul> before </div>
set.portfolio.moments_v1.html:59:1 (set.portfolio.moments_v1.Rd:17): Warning: missing </ul> before </div>
summary.optimize.portfolio.rebalancing.html:51:1 (summary.optimize.portfolio.rebalancing.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
stockDataResample.html:69:1 (stockDataResample.Rd:25): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
dot-F_func.html:90:1 (dot-F_func.Rd:32): Warning: missing </ul> before </div>
Found the following HTML validation problems:
jolla.html:66:1 (jolla.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘James Robinson <james.em.robinson@gmail.com>’

The Description field contains
  <arXiv:1806.11544>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Char Leung <charleung@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Char",
                    family = "Leung",
                    role = c("aut", "cre"),
                    email = "charleung@hotmail.fr")
as necessary.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Found the following HTML validation problems:
null_to_na.html:46:1 (null_to_na.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
po_compile.html:62:1 (po_compile.Rd:18): Warning: missing </ul> before </div>
po_create.html:66:1 (po_create.Rd:21): Warning: missing </ul> before </div>
po_explain_plurals.html:55:1 (po_explain_plurals.Rd:14): Warning: missing </ul> before </div>
po_update.html:84:1 (po_update.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = "Leif",
                      family = "Johnson",
                      role = "aut",
                      email = "ltjohnson@google.com"))
as necessary.
Found the following HTML validation problems:
H2.html:61:1 (H2.Rd:19): Warning: missing </ul> before </div>
analyseMCMCs.html:59:1 (analyseMCMCs.Rd:22): Warning: missing </ul> before </div>
logLik.POUMM.html:51:1 (logLik.POUMM.Rd:12): Warning: missing </ul> before </div>
loglik_abc_g0_g0Prior.html:64:1 (loglik_abc_g0_g0Prior.Rd:20): Warning: missing </ul> before </div>
summary.POUMM.html:85:1 (summary.POUMM.Rd:38): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ebp.Rd: nlme
  write.excel.Rd: openxlsx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
power4test.html:756:1 (power4test.Rd:593): Warning: <h4> anchor "Single-Group-Model" already defined
power4test.html:878:1 (power4test.Rd:690): Warning: <h4> anchor "Multigroup-Model" already defined
power4test.html:936:1 (power4test.Rd:739): Warning: <h4> anchor "Single-Group-Model" already defined
power4test.html:1046:1 (power4test.Rd:814): Warning: <h4> anchor "Multigroup-Model" already defined
power4test.html:1156:1 (power4test.Rd:913): Warning: <h4> anchor "Single-Group-Model" already defined
ptable_pop.html:280:1 (ptable_pop.Rd:214): Warning: <h4> anchor "Single-Group-Model" already defined
ptable_pop.html:402:1 (ptable_pop.Rd:311): Warning: <h4> anchor "Multigroup-Model" already defined
ptable_pop.html:460:1 (ptable_pop.Rd:360): Warning: <h4> anchor "Single-Group-Model" already defined
ptable_pop.html:570:1 (ptable_pop.Rd:435): Warning: <h4> anchor "Multigroup-Model" already defined
sim_data.html:653:1 (sim_data.Rd:511): Warning: <h4> anchor "Single-Group-Model" already defined
sim_data.html:706:1 (sim_data.Rd:558): Warning: <h4> anchor "Single-Group-Model" already defined
sim_data.html:828:1 (sim_data.Rd:655): Warning: <h4> anchor "Multigroup-Model" already defined
sim_data.html:886:1 (sim_data.Rd:704): Warning: <h4> anchor "Single-Group-Model" already defined
sim_data.html:996:1 (sim_data.Rd:779): Warning: <h4> anchor "Multigroup-Model" already defined
Maintainer: ‘Eric Kawaguchi <erickawaguchi@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qing",
                      family = "Yang",
                      role = "aut"),
               person(given = c("Wing", "K."),
                      family = "Fung",
                      role = "aut"),
               person(given = "Eric",
                      family = "Kawaguchi",
                      role = c("ctb", "cre"),
                      email = "erickawaguchi@ucla.edu"),
               person(given = "Gang",
                      family = "Li",
                      role = c("aut", "cre")))
as necessary.
Found the following HTML validation problems:
power_example.html:62:1 (power_example.Rd:18): Warning: missing </ul> before </div>
result_example.html:59:1 (result_example.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Charles Kooperberg <clk@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Kooperberg",
                      role = c("aut", "cre"),
                      email = "clk@fredhutch.org"),
               person(given = "Li",
                      family = "Hsu",
                      role = "aut",
                      email = "lih@fredhutch.org"))
as necessary.
checkRd: (-1) coalesce_xy.Rd:22: Lost braces; missing escapes or markup?
    22 | the \code{conflict} argument of {powerjoin}'s join functions. \code{coalesce_xy()} is
       |                                 ^
checkRd: (-1) power_left_join.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{by}{As in {dplyr}, but extended so user can supply a formula or a list
       |                 ^
checkRd: (-1) power_left_join.Rd:79: Lost braces; missing escapes or markup?
    79 | \item{keep}{A boolean for compatibility with {dplyr}, or a value among "left",
       |                                              ^
checkRd: (-1) preprocess_inputs.Rd:37: Lost braces; missing escapes or markup?
    37 | only be used in the \code{x} and \code{y} arguments of {powerjoin} join functions. No
       |                                                        ^
Found the following HTML validation problems:
plot.bs_xmin.html:63:1 (plot.bs_xmin.Rd:21): Warning: missing </ul> before </div>
show-distribution-method.html:49:1 (show-distribution-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Weiliang Qiu <weiliang.qiu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Weiliang",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "weiliang.qiu@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘FSR.R’ ‘SR.R’ ‘helper_functions_model.R’ ‘plot.powerNLSEM.R’
    ‘smart_search.R’
Maintainer: ‘Daniel E. Weeks <weeks@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "E."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeks@pitt.edu")
as necessary.
Found the following HTML validation problems:
OwensQOwen.html:74:1 (OwensQOwen.Rd:33): Warning: <h3> anchor "_sec_note" already defined
checkRd: (-1) bira2.Rd:91: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:146: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:148: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:126: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:219: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:221: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:223: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:225: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:227: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:229: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:231: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:233: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:235: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:237: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:301: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:303: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:305: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:307: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:309: Escaped LaTeX specials: \&
checkRd: (-1) med_pn.Rd:129: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘save.R’
Maintainer: ‘Thorsten Pohlert <thorsten.pohlert@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorsten",
                    family = "Pohlert",
                    role = c("aut", "cre"),
                    email = "thorsten.pohlert@gmx.de")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:60:1 (inst/NEWS.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘David Hofmeyr <dhofmeyr@sun.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hofmeyr",
                    role = c("aut", "cre"),
                    email = "n.pavlidis@lancaster.ac.uk")
as necessary.
Found the following HTML validation problems:
hp_plot.html:55:1 (hp_plot.Rd:14): Warning: missing </ul> before </div>
node_plot.html:59:1 (node_plot.Rd:15): Warning: missing </ul> before </div>
tree_plot.html:59:1 (tree_plot.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Seongho Kim <biostatistician.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seongho",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "biostatistician.kim@gmail.com")
as necessary.
Found the following HTML validation problems:
negloglik_hp.html:55:1 (negloglik_hp.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Ben Youngman <b.youngman@exeter.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ben",
                      family = "Youngman",
                      role = c("aut", "cre"),
                      email = "b.youngman@exeter.ac.uk"),
               person(given = "Theo",
                      family = "Economou",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ProgPredLasso.Rd: cvCovEst
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = "Sengwee",
                      family = "Toh",
                      role = "aut",
                      email = "darren_toh@harvardpilgrim.org"))
as necessary.
Maintainer: ‘Taiane Schaedler Prass <taianeprass@gmail.com>’

The Description field contains
  <arXiv:2303.04754>) and has been found to outperform several other
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ccp_ppm.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{model}{Determines of model fit is such that there are p_{it}s (model=1) or
       |                                                               ^
checkRd: (-1) curve_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) gaussian_ppmx.Rd:143: Lost braces; missing escapes or markup?
   143 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) gaussian_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) ordinal_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) ordinal_ppmx.Rd:147: Lost braces; missing escapes or markup?
   147 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each sujbects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
Maintainer: ‘Jan Steinfeld <jan.d.steinfeld@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
JEvalMstep.html:81:1 (JEvalMstep.Rd:26): Warning: missing </ul> before </div>
VEstep.html:74:1 (VEstep.Rd:24): Warning: missing </ul> before </div>
correctTau.html:46:1 (correctTau.Rd:10): Warning: missing </ul> before </div>
mainVEMPar.html:93:1 (mainVEMPar.Rd:39): Warning: missing </ul> before </div>
tauUpdate.html:74:1 (tauUpdate.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
optimize_design.html:63:1 (optimize_design.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Jack G. Gambino <jack.gambino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jack", "G."),
                    family = "Gambino",
                    role = c("aut", "cre"),
                    email = "jack.gambino@gmail.com")
as necessary.
Maintainer: ‘Karla Mayra Perez <karla.mayra25@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Karla", "Mayra"),
                      family = "Perez",
                      role = c("aut", "cre"),
                      email = "karla.mayra25@gmail.com"),
               person(given = c("Luis", "E."),
                      family = "Nieto-Barajas",
                      role = "aut"))
as necessary.

The Description field contains
  (2019) <arXiv:1902.06020>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eun-Kyung",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "lee.eunk@gmail.com")
as necessary.
Maintainer: ‘Jessica J. Kraker <krakerjj@uwec.edu>’

The Description field contains
  mathematical derivations and applications can be found on arXiv:
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Guangbao Guo <ggb11111111@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guangbao",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "ggb11111111@163.com"),
               person(given = "Jiarui",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Jiaqiang Zhu <jiaqiang@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shiquan",
                      family = "Sun",
                      role = "aut"),
               person(given = "Jiaqiang",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "jiaqiang@umich.edu"),
               person(given = "Xiang",
                      family = "Zhou",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PQLseq.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pqrfe.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabor",
                      family = "Csardi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Sindre",
                      family = "Sorhus",
                      role = "aut"))
as necessary.
Maintainer: ‘Miron B. Kursa <m@mbq.me>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘praznik/libs/praznik.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Chong Wu <wuxx0845@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chong",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wuxx0845@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Claudio Zandonella Callegher <claudiozandonella@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘PRDA.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
  File ‘prospective.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
  File ‘retrospective.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PRDA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) PRDA.Rd:8: Lost braces; missing escapes or markup?
     8 | Given an hypothetical value of effect size, {PRDA} performs a prospective
       |                                             ^
checkRd: (-1) PRDA.Rd:22: Lost braces; missing escapes or markup?
    22 | In {PRDA} there are two main functions:
       |    ^
checkRd: (-1) PRDA.Rd:51: Lost braces; missing escapes or markup?
    51 | Alternatively, {PRDA} allows users to specify a distribution of plausible
       |                ^
Maintainer: ‘Lucas Venezian Povoa <lucasvenez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lucas", "Venezian"),
                      family = "Povoa",
                      role = c("aut", "cre"),
                      email = "lucasvenez@gmail.com"),
               person(given = c("Jonas", "Teixeira"),
                      family = "Nery",
                      role = "ctb"))
as necessary.
Running examples in ‘precintcon-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pplot.deciles
> ### Title: Plot deciles
> ### Aliases: pplot.deciles precintcon.plot.deciles
> ### Keywords: deciles precipitation
> 
> ### ** Examples
> 
> ## Loading the monthly precipitation serie.
> #
> data(monthly)
> 
> ## Performing the a set of statistical analysis
> #
> pplot.deciles(monthly)
Error:
! The `show_guide` argument of `layer()` was deprecated in ggplot2 2.0.0
  and is now defunct.
ℹ Please use the `show.legend` argument instead.
Backtrace:
    ▆
 1. └─precintcon::pplot.deciles(monthly)
 2.   └─precintcon::precintcon.plot.deciles(...)
 3.     └─base::mapply(...)
 4.       └─precintcon (local) `<fn>`(...)
 5.         └─ggplot2::geom_boxplot(...)
 6.           └─ggplot2::layer(...)
 7.             └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)")
 8.               └─lifecycle:::deprecate_stop0(msg)
 9.                 └─rlang::cnd_signal(...)
Execution halted
Found the following HTML validation problems:
theme_precisely.html:54:1 (theme_precisely.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Lorenz Walthert <lorenz.walthert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenz",
                    family = "Walthert",
                    role = c("aut", "cre"),
                    email = "lorenz.walthert@icloud.com")
as necessary.
Found the following HTML validation problems:
call_precommit.html:52:1 (call_precommit.Rd:12): Warning: missing </ul> before </div>
communicate_captured_call.html:46:1 (communicate_captured_call.Rd:10): Warning: missing </ul> before </div>
copy_artifacts.html:52:1 (copy_artifacts.Rd:13): Warning: missing </ul> before </div>
empty_on_cran.html:48:1 (empty_on_cran.Rd:10): Warning: missing </ul> before </div>
ensure_named.html:50:1 (ensure_named.Rd:12): Warning: missing </ul> before </div>
fallback_doc.html:40:1 (fallback_doc.Rd:7): Warning: missing </ul> before </div>
generate_uninstalled_pkg_name.html:46:1 (generate_uninstalled_pkg_name.Rd:10): Warning: missing </ul> before </div>
git_init.html:47:1 (git_init.Rd:10): Warning: missing </ul> before </div>
local_test_setup.html:68:1 (local_test_setup.Rd:25): Warning: missing </ul> before </div>
path_derive_precommit_exec_impl.html:48:1 (path_derive_precommit_exec_impl.Rd:11): Warning: missing </ul> before </div>
release_complete.html:46:1 (release_complete.Rd:10): Warning: missing </ul> before </div>
run_test_impl.html:99:1 (run_test_impl.Rd:47): Warning: missing </ul> before </div>
update_rev_in_config.html:54:1 (update_rev_in_config.Rd:12): Warning: missing </ul> before </div>
use_ci.html:71:1 (use_ci.Rd:29): Warning: missing </ul> before </div>
checkRd: (-1) diagnose_expressions.Rd:39: Lost braces
    39 | \item wrapping a function argument in two curly braces (e.g. `{{arg}} > 0) means
       |                                                               ^
File ‘precondition/libs/precondition.so’:
  Found non-API calls to R: ‘PRENV’, ‘R_PromiseExpr’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
expand.grid2.html:50:1 (expand.grid2.Rd:12): Warning: missing </ul> before </div>
gg_color_hue.html:46:1 (gg_color_hue.Rd:10): Warning: missing </ul> before </div>
is.mynumeric.html:50:1 (is.mynumeric.Rd:12): Warning: missing </ul> before </div>
myseq.html:50:1 (myseq.Rd:12): Warning: missing </ul> before </div>
rank2group2.html:50:1 (rank2group2.Rd:12): Warning: missing </ul> before </div>
revOperator.html:46:1 (revOperator.Rd:10): Warning: missing </ul> before </div>
slope2angle.html:113:1 (slope2angle.Rd:51): Warning: missing </ul> before </div>
Maintainer: ‘Suman Kundu <suman_math@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suman",
                      family = "Kundu",
                      role = c("aut", "cre"),
                      email = "suman_math@yahoo.com"),
               person(given = c("Yurii", "S."),
                      family = "Aulchenko",
                      role = "aut"),
               person(given = c("A.", "Cecile", "J.W."),
                      family = "Janssens",
                      role = "aut"))
as necessary.
Maintainer: ‘David Stanley <dstanley@uoguelph.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Stanley",
                    role = c("aut", "cre"),
                    email = "dstanley@uoguelph.ca")
as necessary.
Maintainer: ‘Marcel Miché <marcel.miche.predictme@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcel",
                    family = "Miché",
                    role = c("aut", "cre"),
                    email = "marcel.miche.predictme@gmail.com")
as necessary.
Found the following HTML validation problems:
run_app.html:46:1 (run_app.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.html:88:1 (plot.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Orestis Efthimiou <oremiou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Orestis",
                    family = "Efthimiou",
                    role = c("aut", "cre"),
                    email = "oremiou@gmail.com")
as necessary.
Maintainer: ‘Atesh Koul <atesh.koul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atesh",
                    family = "Koul",
                    role = c("aut", "cre"),
                    email = "atesh.koul@gmail.com")
as necessary.
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘PredPsych’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PredPsych.Rcheck/00install.out’ for details.
Maintainer: ‘Amin Adibi <adibi@alumni.ubc.ca>’

The Description field contains
  <arXiv:2003.00316>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) dev_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:68-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:26-27: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
overall_power_binom.html:113:1 (overall_power_binom.Rd:58): Warning: missing </ul> before </div>
overall_sample_size_bin.html:123:1 (overall_sample_size_bin.Rd:64): Warning: missing </ul> before </div>
Maintainer: ‘John Lepird <jlepird@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lepird",
                    role = c("aut", "cre"),
                    email = "jlepird@alum.mit.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
dot-estimateEntropy.html:60:1 (dot-estimateEntropy.Rd:17): Warning: missing </ul> before </div>
dot-getLogIndifProb.html:54:1 (dot-getLogIndifProb.Rd:14): Warning: missing </ul> before </div>
dot-getLogStrictProb.html:54:1 (dot-getLogStrictProb.Rd:14): Warning: missing </ul> before </div>
dot-sampleEntropy.html:46:1 (dot-sampleEntropy.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Denis Mollison <denis.mollison@gmail.com>’

The Description field contains
  (2023) <arXiv:2303.15310>, (see also the package manual
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chin Soon Lim <chinsoon12@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chin", "Soon"),
                    family = "Lim",
                    role = c("aut", "cre"),
                    email = "chinsoon12@hotmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chinsoon12/PreKnitPostHTMLRender
which should likely be
  https://github.com/chinsoon12/PreKnitPostHTMLRender/issues
instead.
Found the following HTML validation problems:
eval_src.html:50:1 (eval_src.Rd:12): Warning: missing </ul> before </div>
post_html_render_proc.html:55:1 (post_html_render_proc.Rd:12): Warning: missing </ul> before </div>
pre_knit_proc.html:51:1 (pre_knit_proc.Rd:12): Warning: missing </ul> before </div>
run_code.html:50:1 (run_code.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Silvia Liverani <liveranis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "I."),
                      family = "Hastie",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Liverani",
                      role = c("aut", "cre"),
                      email = "liveranis@gmail.com"),
               person(given = c("Sylvia", "Richardson", "with", "contributions", "from", "Aurore", "J."),
                      family = "Lavigne",
                      role = "aut"),
               person(given = "Lucy",
                      family = "Leigh",
                      role = "aut"),
               person(given = "Lamiae",
                      family = "Azizi",
                      role = "aut"),
               person(given = "Xi",
                      family = "Liu",
                      role = "aut"),
               person(given = "Ruizhu",
                      family = "Huang",
                      role = "aut"),
               person(given = "Austin",
                      family = "Gratton",
                      role = "aut"),
               person(given = "Wei",
                      family = "Jing",
                      role = "aut"))
as necessary.
Maintainer: ‘Swamiji Pravedson <swamiji.pravedson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Swamiji",
                    family = "Pravedson",
                    role = c("aut", "cre"),
                    email = "swamiji.pravedson@gmail.com")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Josef Frank <josef.frank@gmx.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Frank",
                    role = c("aut", "cre"),
                    email = "josef.frank@gmx.ch")
as necessary.
checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
checkRd: (-1) format_number.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) format_number.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) format_number.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gustavo Soutinho <gustavosoutinho@sapo.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gustavo",
                      family = "Soutinho",
                      role = c("aut", "cre"),
                      email = "gustavosoutinho@sapo.pt"),
               person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Oliveira",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
add_y_axis.html:71:1 (add_y_axis.Rd:25): Warning: missing </ul> before </div>
boxplot.prettyB.html:100:1 (boxplot.prettyB.Rd:55): Warning: missing </ul> before </div>
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:210:1 (inst/NEWS.Rd:100): Warning: missing </ul> before </div>
NEWS.html:61:1 (inst/NEWS.Rd:24): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:81:1 (inst/NEWS.Rd:34): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:100:1 (inst/NEWS.Rd:44): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:123:1 (inst/NEWS.Rd:58): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:140:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:155:1 (inst/NEWS.Rd:76): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:171:1 (inst/NEWS.Rd:84): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:190:1 (inst/NEWS.Rd:94): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Dewey Dunnington <dewey@fishandwhistle.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dewey",
                    family = "Dunnington",
                    role = c("aut", "cre"),
                    email = "dewey@fishandwhistle.net")
as necessary.
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon",
                      role = c("aut", "cre"),
                      email = "drjimlemon@gmail.com"),
               person(given = "Philippe",
                      family = "Grosjean",
                      role = "aut",
                      email = "phgrosjean@sciviews.org"))
as necessary.
Found the following files/directories:
  ‘hista.png’ ‘plotcd.png’ ‘test.R’ ‘test.html’ ‘testR2html.R’
  ‘testglm.csv’ ‘testglm.html’ ‘testglm.tab’
Maintainer: ‘Brecht Devleesschauwer <brechtdv@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘estimate_risk.Rd’
Found the following HTML validation problems:
theme_prevR.html:48:1 (theme_prevR.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ankur",
                    family = "Chakravarthy",
                    role = c("aut", "cre"),
                    email = "ankur.chakravarthy.10@ucl.ac.uk")
as necessary.
Maintainer: ‘Zichong Li <zichongli5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zichong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "zichongli5@gmail.com"),
               person(given = "Qianli",
                      family = "Shen",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
dot-dpcens.html:83:1 (dot-dpcens.Rd:37): Warning: missing </ul> before </div>
dot-name_deprecation.html:71:1 (dot-name_deprecation.Rd:26): Warning: missing </ul> before </div>
dot-ppcens.html:77:1 (dot-ppcens.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘David Schruth <data@anthropoidea.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Schruth",
                      role = "cre",
                      email = "data@anthropoidea.org"),
               person(given = "Marc",
                      family = "Myers",
                      role = "ctb"),
               person(given = "Noel",
                      family = "Rowe",
                      role = "aut"))
as necessary.
Maintainer: ‘Florian Privé <florian.prive.21@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
Found the following HTML validation problems:
primefactr-package.html:40:1 (primefactr-package.Rd:8): Warning: missing </ul> before </div>
Maintainer: ‘Ziwei Zhu <ziweiz@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziwei",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "ziweiz@umich.edu"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  component analysis with heterogeneous missingness. <arXiv:1906.12125>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hank Stevens <hank.stevens@miamioh.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M", "H", "H"),
                      family = "Stevens",
                      role = "aut"),
               person(given = "Hank",
                      family = "Stevens",
                      role = "cre",
                      email = "hank.stevens@miamioh.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) alogistic.Rd:20: Lost braces
    20 | The user does not put these directly into this function, but rather uses code{ode} in the \code{deSolve} package.
       |                                                                              ^
Found the following HTML validation problems:
clustalo.html:64:1 (clustalo.Rd:18): Warning: missing </ul> before </div>
identify.primerTree_plot.html:53:1 (identify.primerTree_plot.Rd:13): Warning: missing </ul> before </div>
parse_primer_hits.html:47:1 (parse_primer_hits.Rd:11): Warning: missing </ul> before </div>
seq_lengths.primerTree.html:51:1 (seq_lengths.primerTree.Rd:12): Warning: missing </ul> before </div>
File ‘PRIMME/libs/PRIMME.so’:
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘primme/libprimme.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (HenrikBengtsson), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
  Authors@R: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (github: HenrikBengtsson), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
Found the following HTML validation problems:
deprecated.html:58:1 (deprecated.Rd:22): Warning: missing </ul> before </div>
checkRd: (-1) findbeta.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{lower.v}{logical, if TRUE the specified percentile.value is the upper limit for the mean (or the median or the mode) at the specified confidence level (percentile). If {FALSE} the specified percentile.value is the lower limit for the mean (or the median or the mode) at the specified confidence level (percentile). The default is FALSE.}
       |                                                                                                                                                                               ^
Maintainer: ‘Roman Hornung <hornung@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Klau",
                      role = "aut"),
               person(given = "Roman",
                      family = "Hornung",
                      role = c("aut", "cre"),
                      email = "hornung@ibe.med.uni-muenchen.de"),
               person(given = "Alina",
                      family = "Bauer",
                      role = "aut"),
               person(given = "Jonas",
                      family = "Hagenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Tammo Krueger <tammokrueger@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tammo",
                      family = "Krueger",
                      role = c("aut", "cre"),
                      email = "tammokrueger@googlemail.com"),
               person(given = "Nicole",
                      family = "Kraemer",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
evaluation_table.html:50:1 (evaluation_table.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Danilo Freire <danilofreire@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
wpb_region_list.html:51:1 (wpb_region_list.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Prithul Chaturvedi <prithulc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prithul",
                    family = "Chaturvedi",
                    role = c("aut", "cre"),
                    email = "prithulc@gmail.com")
as necessary.
Maintainer: ‘Staal A. Vinterbo <Staal.Vinterbo@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Staal", "A."),
                    family = "Vinterbo",
                    role = c("aut", "cre"),
                    email = "Staal.Vinterbo@ntnu.no")
as necessary.
Found the following HTML validation problems:
GPsInElevGaps.html:80:1 (GPsInElevGaps.Rd:33): Warning: missing </ul> before </div>
changewindowSize.html:56:1 (changewindowSize.Rd:16): Warning: missing </ul> before </div>
classifSumm.html:66:1 (classifSumm.Rd:22): Warning: missing </ul> before </div>
collectBestMatchInfo.html:62:1 (collectBestMatchInfo.Rd:18): Warning: missing </ul> before </div>
contigChunks.html:53:1 (contigChunks.Rd:15): Warning: missing </ul> before </div>
elevOrGapClassif.html:53:1 (elevOrGapClassif.Rd:14): Warning: missing </ul> before </div>
fullElevGap.html:66:1 (fullElevGap.Rd:21): Warning: missing </ul> before </div>
fullElevGapShrink.html:92:1 (fullElevGapShrink.Rd:39): Warning: missing </ul> before </div>
geneAnnotationPlot.html:91:1 (geneAnnotationPlot.Rd:38): Warning: missing </ul> before </div>
genomeChunks.html:53:1 (genomeChunks.Rd:15): Warning: missing </ul> before </div>
linkChunks.html:65:1 (linkChunks.Rd:20): Warning: missing </ul> before </div>
noPattern.html:49:1 (noPattern.Rd:11): Warning: missing </ul> before </div>
partialElevGap.html:63:1 (partialElevGap.Rd:19): Warning: missing </ul> before </div>
partialElevGapShrink.html:92:1 (partialElevGapShrink.Rd:39): Warning: missing </ul> before </div>
patternBuilder.html:53:1 (patternBuilder.Rd:14): Warning: missing </ul> before </div>
patternMatcher.html:84:1 (patternMatcher.Rd:33): Warning: missing </ul> before </div>
patternTranslator.html:65:1 (patternTranslator.Rd:20): Warning: missing </ul> before </div>
pileupFormatter.html:52:1 (pileupFormatter.Rd:13): Warning: missing </ul> before </div>
removeNoPatterns.html:48:1 (removeNoPatterns.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
inf_conformal-butcher.html:97:1 (inf_conformal-butcher.Rd:73): Warning: missing </ul> before </div>
required_pkgs.cal_object.html:80:1 (required_pkgs.cal_object.Rd:41): Warning: missing </ul> before </div>
required_pkgs.int_conformal_cv.html:62:1 (required_pkgs.int_conformal_cv.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Jim Albert <albert@bgsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jim",
                    family = "Albert",
                    role = c("aut", "cre"),
                    email = "albert@bgsu.edu")
as necessary.
Maintainer: ‘Junhui Li <junhuili@cau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhui",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "junhuili@cau.edu.cn")
as necessary.
Maintainer: ‘Alexander McLain <mclaina@mailbox.sc.edu>’

The Description field contains
  Zgodic, and Bondell (2022) <arXiv:2209.08139>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tim Liao <tfliao@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Liao",
                    role = c("aut", "cre"),
                    email = "tfliao@illinois.edu")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Found the following HTML validation problems:
exams.html:55:1 (exams.Rd:15): Warning: missing </ul> before </div>
metricsgrades.html:60:1 (metricsgrades.Rd:17): Warning: missing </ul> before </div>
website.html:56:1 (website.Rd:15): Warning: missing </ul> before </div>
widgets.html:59:1 (widgets.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Giuliana Cortese <gcortese@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giuliana",
                    family = "Cortese",
                    role = c("aut", "cre"),
                    email = "gcortese@stat.unipd.it")
as necessary.
Maintainer: ‘Rishabh Gupta <rishabh.uk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rishabh",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "rishabh.uk@gmail.com"),
               person(given = c("Nicholas", "J."),
                      family = "Matzke",
                      role = "aut"))
as necessary.
checkRd: (-1) proc.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) proc.Rd:28: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
export_graph.html:76:1 (export_graph.Rd:30): Warning: missing </ul> before </div>
export_map.html:76:1 (export_map.Rd:30): Warning: missing </ul> before </div>
frequency.html:60:1 (frequency.Rd:20): Warning: missing </ul> before </div>
get_activities.html:48:1 (get_activities.Rd:13): Warning: missing </ul> before </div>
layout_pm.html:54:1 (layout_pm.Rd:14): Warning: missing </ul> before </div>
performance.html:75:1 (performance.Rd:29): Warning: missing </ul> before </div>
precedence_matrix_absolute.html:52:1 (precedence_matrix_absolute.Rd:12): Warning: missing </ul> before </div>
processMapOutput.html:56:1 (processMapOutput.Rd:16): Warning: missing </ul> before </div>
renderProcessMap.html:55:1 (renderProcessMap.Rd:15): Warning: missing </ul> before </div>
render_map.html:84:1 (render_map.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘gert.janssenswillen@uhasselt.be <gert.janssenswillen@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gert",
                      family = "Janssenswillen",
                      role = "aut"),
               person(family = "gert.janssenswillen@uhasselt.be",
                      role = "cre",
                      email = "gert.janssenswillen@uhasselt.be"))
as necessary.
Found the following HTML validation problems:
activity_dashboard.html:46:1 (activity_dashboard.Rd:10): Warning: missing </ul> before </div>
performance_dashboard.html:46:1 (performance_dashboard.Rd:10): Warning: missing </ul> before </div>
resource_dashboard.html:46:1 (resource_dashboard.Rd:10): Warning: missing </ul> before </div>
rework_dashboard.html:46:1 (rework_dashboard.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_vocabulary.html:46:1 (get_vocabulary.Rd:10): Warning: missing </ul> before </div>
reexports.html:100:1 (reexports.Rd:39): Warning: missing </ul> before </div>
Maintainer: ‘Eric Coissac <eric.coissac@metabarcoding.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eric",
                      family = "Coissac",
                      role = c("aut", "cre"),
                      email = "eric.coissac@metabarcoding.org"),
               person(given = "Christelle",
                      family = "Gonindard-Melodelima",
                      role = "aut"))
as necessary.
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Gabriele Rovigatti <gabriele.rovigatti@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Rovigatti",
                    role = c("aut", "cre"),
                    email = "gabriele.rovigatti@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
checkCauses.html:50:1 (checkCauses.Rd:12): Warning: missing </ul> before </div>
head.Hist.html:47:1 (head.Hist.Rd:10): Warning: missing </ul> before </div>
is.na.Hist.html:48:1 (is.na.Hist.Rd:10): Warning: missing </ul> before </div>
str.Hist.html:47:1 (str.Hist.Rd:10): Warning: missing </ul> before </div>
sub-.Hist.html:60:1 (sub-.Hist.Rd:16): Warning: missing </ul> before </div>
subset.Hist.html:64:1 (subset.Hist.Rd:18): Warning: missing </ul> before </div>
tail.Hist.html:47:1 (tail.Hist.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘fareprim.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘fisher.Rd’:
    https://doi.org/10.1007/BF00158354
  File ‘hicksmoorsteen.Rd’:
    https://doi.org/10.1111/j.1467-9957.2010.02169.x
    https://doi.org/10.1111/j.1467-8489.2010.00512.x
  File ‘lowe.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘usagri.Rd’:
    https://doi.org/10.2307/1244458
    https://doi.org/10.1111/j.0002-9092.2004.00683.x
checkRd: (-1) paasche.Rd:91: Lost braces
    91 |     \code{OSME} \tab Output-oriented scale-mix efficiency score \emph{(code{orientation = "out"})}\cr
       |                                                                            ^
Found the following HTML validation problems:
col_labels.html:46:1 (col_labels.Rd:10): Warning: missing </ul> before </div>
ddecker.html:50:1 (ddecker.Rd:12): Warning: missing </ul> before </div>
find_col_level.html:46:1 (find_col_level.Rd:10): Warning: missing </ul> before </div>
find_row_level.html:46:1 (find_row_level.Rd:10): Warning: missing </ul> before </div>
fluct.html:58:1 (fluct.Rd:16): Warning: missing </ul> before </div>
flucts.html:46:1 (flucts.Rd:10): Warning: missing </ul> before </div>
hbar.html:58:1 (hbar.Rd:16): Warning: missing </ul> before </div>
hspine.html:58:1 (hspine.Rd:16): Warning: missing </ul> before </div>
mosaic.html:48:1 (mosaic.Rd:11): Warning: missing </ul> before </div>
nested.html:48:1 (nested.Rd:11): Warning: missing </ul> before </div>
row_labels.html:46:1 (row_labels.Rd:10): Warning: missing </ul> before </div>
scale_x_product.html:46:1 (scale_x_product.Rd:10): Warning: missing </ul> before </div>
scale_y_product.html:46:1 (scale_y_product.Rd:10): Warning: missing </ul> before </div>
spine.html:58:1 (spine.Rd:16): Warning: missing </ul> before </div>
stacked.html:50:1 (stacked.Rd:12): Warning: missing </ul> before </div>
tile.html:55:1 (tile.Rd:14): Warning: missing </ul> before </div>
vbar.html:58:1 (vbar.Rd:16): Warning: missing </ul> before </div>
vspine.html:58:1 (vspine.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
install_go.html:56:1 (install_go.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
xNetSubscribe.html:53:1 (xNetSubscribe.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) plot.profileModel.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) profileModel.Rd:277: Escaped LaTeX specials: \&
Maintainer: ‘Christopher David Desjardins <cddesjardins@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Okan",
                      family = "Bulut",
                      role = "aut",
                      email = "okanbulut84@gmail.com"),
               person(given = c("Christopher", "David"),
                      family = "Desjardins",
                      role = c("aut", "cre"),
                      email = "cddesjardins@gmail.com"))
as necessary.
checkRd: (-1) PS.Rd:9: Lost braces
     9 |                 \item{CD}{}{Character disorder scale score}
       |                            ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘how-to-use.Rmd’ using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘how-to-use.Rmd’

--- re-building ‘plots-gallery.Rmd’ using rmarkdown

Quitting from plots-gallery.Rmd:1148-1150 [unnamed-chunk-47]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'plots-gallery.Rmd' failed with diagnostics:
Problem while computing stat.
ℹ Error occurred in the 1st layer.
Caused by error in `compute_layer()`:
! The package "MASS" is required for calculating 2D density.
--- failed re-building ‘plots-gallery.Rmd’

SUMMARY: processing the following file failed:
  ‘plots-gallery.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
autoplot.batch.html:51:1 (autoplot.batch.Rd:12): Warning: missing </ul> before </div>
autoplot.online.html:51:1 (autoplot.online.Rd:12): Warning: missing </ul> before </div>
init_experts_list.html:61:1 (init_experts_list.Rd:18): Warning: missing </ul> before </div>
make_basis_mats.html:98:1 (make_basis_mats.Rd:42): Warning: missing </ul> before </div>
make_hat_mats.html:109:1 (make_hat_mats.Rd:49): Warning: missing </ul> before </div>
make_knots.html:68:1 (make_knots.Rd:20): Warning: missing </ul> before </div>
plot.batch.html:51:1 (plot.batch.Rd:12): Warning: missing </ul> before </div>
plot.online.html:51:1 (plot.online.Rd:12): Warning: missing </ul> before </div>
post_process_model.html:54:1 (post_process_model.Rd:12): Warning: missing </ul> before </div>
print.batch.html:51:1 (print.batch.Rd:12): Warning: missing </ul> before </div>
print.online.html:51:1 (print.online.Rd:12): Warning: missing </ul> before </div>
summary.online.html:51:1 (summary.online.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"),
               person(given = "Riad",
                      family = "Jarjour",
                      role = "aut"))
as necessary.
checkRd: (-1) proftools-package.Rd:40: Lost braces
    40 |   by the code{kcachegrind} program available on some operating
       |              ^
Found the following HTML validation problems:
parse_rprof.html:53:1 (parse_rprof.Rd:15): Warning: missing </ul> before </div>
print.profvis.html:70:1 (print.profvis.Rd:23): Warning: missing </ul> before </div>
profvisOutput.html:68:1 (profvisOutput.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
handler_newline.html:71:1 (handler_newline.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create.template.html:54:1 (create.template.Rd:15): Warning: missing </ul> before </div>
internal.var.diff.from.html:51:1 (internal.var.diff.from.Rd:12): Warning: missing </ul> before </div>
migrate.template.html:47:1 (migrate.template.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) prolific_prescreener.Rd:254: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_prescreener.Rd:255: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:243: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:244: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
api_access.html:130:1 (api_access.Rd:97): Warning: <h5> anchor "+2AReturn-Value+2A" already defined
api_access.html:137:1 (api_access.Rd:102): Warning: <h5> anchor "+2AUsage+2A" already defined
Maintainer: ‘Francesco Vidoli <fvidoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Resce",
                      role = "aut"),
               person(given = "Menelaos",
                      family = "Tasiou",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Vidoli",
                      role = c("aut", "cre"),
                      email = "fvidoli@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Austria.Rd’:
    https://doi.org/10.1016/j.jclepro.2019.02.115
Found the following HTML validation problems:
WorkQueue.html:118:1 (WorkQueue.Rd:73): Warning: <h5> anchor "Usage" already defined
WorkQueue.html:124:1 (WorkQueue.Rd:77): Warning: <h5> anchor "Arguments" already defined
WorkQueue.html:147:1 (WorkQueue.Rd:90): Warning: <h5> anchor "Usage" already defined
WorkQueue.html:153:1 (WorkQueue.Rd:94): Warning: <h5> anchor "Arguments" already defined
resolve.html:55:1 (resolve.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) impute_plot.Rd:32: Lost braces; missing escapes or markup?
    32 | \item{global}{Logical. If \code{TRUE} ({default}), a global density plot is
       |                                        ^
Maintainer: ‘Paul E. Promote <promotedev@alteryx.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "E."),
                    family = "Promote",
                    role = c("aut", "cre"),
                    email = "promotedev@alteryx.com")
as necessary.
Found the following HTML validation problems:
add.dependency.html:78:1 (add.dependency.Rd:27): Warning: missing </ul> before </div>
add.metadata.html:54:1 (add.metadata.Rd:14): Warning: missing </ul> before </div>
capture.src.html:50:1 (capture.src.Rd:12): Warning: missing </ul> before </div>
is.https.html:48:1 (is.https.Rd:11): Warning: missing </ul> before </div>
promote.get.html:50:1 (promote.get.Rd:12): Warning: missing </ul> before </div>
promote.post.html:64:1 (promote.post.Rd:20): Warning: missing </ul> before </div>
promote.spider.block.html:51:1 (promote.spider.block.Rd:13): Warning: missing </ul> before </div>
promote.spider.func.html:46:1 (promote.spider.func.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘complete_chat.R’ ‘complete_prompt.R’ ‘format_prompt.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_url.R’
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "Michael", "O"),
                      family = "Ranola",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Lange",
                      role = "aut"),
               person(given = "Steve",
                      family = "Horvath",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Maintainer: ‘Maria Alvarez <maria.alvarez@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Alvarez",
                      role = c("aut", "cre"),
                      email = "maria.alvarez@uvigo.es"),
               person(given = "Javier",
                      family = "Roca-Pardinas",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
cluster_iss.html:57:1 (cluster_iss.Rd:20): Warning: missing </ul> before </div>
dot-expand_txt.html:58:1 (dot-expand_txt.Rd:17): Warning: missing </ul> before </div>
dot-get_phi_tilde.html:46:1 (dot-get_phi_tilde.Rd:10): Warning: missing </ul> before </div>
dot-rcorrect.html:72:1 (dot-rcorrect.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Daan Seynaeve <daan.seynaeve@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Daan",
                      family = "Seynaeve",
                      role = c("aut", "cre"),
                      email = "daan.seynaeve@openanalytics.eu"),
               person(given = c("based", "on", "read.dcf", "by", "R", "Core", "Development"),
                      family = "Team",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
df_for_plotting.html:50:1 (df_for_plotting.Rd:12): Warning: missing </ul> before </div>
fit.prophet.html:62:1 (fit.prophet.Rd:15): Warning: missing </ul> before </div>
validate_column_name.html:68:1 (validate_column_name.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Osama Mahmoud <ofamah@essex.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osama",
                      family = "Mahmoud",
                      role = c("aut", "cre"),
                      email = "ofamah@essex.ac.uk"),
               person(given = "Andrew",
                      family = "Harrison",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Zardad",
                      family = "Khan",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Travis Loux <travis.loux@slu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Travis",
                    family = "Loux",
                    role = c("aut", "cre"),
                    email = "travis.loux@slu.edu")
as necessary.
Maintainer: ‘Nadine Fischoff <nadine.khattak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nadine",
                    family = "Fischoff",
                    role = c("aut", "cre"),
                    email = "nadine.khattak@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘getBills.Rd’:
    \keyword{api,}
    \keyword{congress,}
    \keyword{propublica,}
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Xi", "LUO", "with", "contributions", "from", "Dylan"),
                      family = "Small",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Vikaas",
                      family = "Sohal",
                      role = "aut"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Found the following HTML validation problems:
bitAND.html:50:1 (bitAND.Rd:12): Warning: missing </ul> before </div>
convCppM.html:50:1 (convCppM.Rd:12): Warning: missing </ul> before </div>
get_msc_coeff.html:50:1 (get_msc_coeff.Rd:12): Warning: missing </ul> before </div>
pkg_info.html:46:1 (pkg_info.Rd:10): Warning: missing </ul> before </div>
resample_fwhm.html:58:1 (resample_fwhm.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                  ^
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                                      ^
Found the following HTML validation problems:
herb_check.html:59:1 (herb_check.Rd:17): Warning: missing </ul> before </div>
struc_addSimData.html:57:1 (struc_addSimData.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nba_data.R’ ‘nba_data.Rd’ ‘nfl_data.R’ ‘nhl_data.R’ ‘nhl_data.Rd’
Maintainer: ‘Simon Liles <simon@quantknot.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Liles",
                    role = c("aut", "cre"),
                    email = "simon@quantknot.com")
as necessary.
Maintainer: ‘Arthur Leroy <arthur.leroy.pro@gmail.com>’

The Description field contains
  <arXiv:2307.08975>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot.protoclust.html:53:1 (plot.protoclust.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
geobuf.html:69:1 (geobuf.Rd:25): Warning: missing </ul> before </div>
mapbox.html:63:1 (mapbox.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Przemysław Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  available at http://biecek.pl/BetaBit/Warsaw.  It's a part of Beta and
  http://biecek.pl/BetaBit.
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
dynGraph.html:46:1 (dynGraph.Rd:10): Warning: missing </ul> before </div>
fixUploadedFilesNames.html:46:1 (fixUploadedFilesNames.Rd:10): Warning: missing </ul> before </div>
get_cut_from_merge_id.html:57:1 (get_cut_from_merge_id.Rd:17): Warning: missing </ul> before </div>
get_paths_from_cut.html:54:1 (get_paths_from_cut.Rd:13): Warning: missing </ul> before </div>
load_obj.html:46:1 (load_obj.Rd:10): Warning: missing </ul> before </div>
protoclust_to_json.html:46:1 (protoclust_to_json.Rd:10): Warning: missing </ul> before </div>
selectJS.html:46:1 (selectJS.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.
checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cell.R’ ‘command.R’ ‘instrument.R’ ‘io.R’ ‘modplug.R’ ‘note.R’
    ‘render.R’ ‘s3.R’ ‘select_ops.R’
checkRd: (-1) pr_stem_sentences.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capital letters 
       |                       ^
checkRd: (-1) pr_stem_words.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capitals letters 
       |                       ^
checkRd: (-1) proust_sentiments.Rd:7: Lost braces; missing escapes or markup?
     7 | See the {rfeel} package now: http://github.com/ColinFay/rfeel}
       |         ^
checkRd: (-1) proust_sentiments.Rd:20: Lost braces; missing escapes or markup?
    20 | See the {rfeel} package now: http://github.com/ColinFay/rfeel
       |         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_proverbs.R’
Found the following HTML validation problems:
crossprod.html:65:1 (crossprod.Rd:23): Warning: missing </ul> before </div>
File ‘proxy/libs/proxy.so’:
  Found non-API calls to R: ‘OBJECT’, ‘Rf_NonNullStringMatch’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Yi Zhao <zhayi@umich.edu>’

The Description field contains
  <arXiv:2105.03993>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘M. S. Islam <shahed-sta@sust.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "S."),
                    family = "Islam",
                    role = c("aut", "cre"),
                    email = "shahed-sta@sust.edu")
as necessary.
File ‘pryr/libs/pryr.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘NAMED’, ‘PRCODE’,
    ‘PRENV’, ‘PRVALUE’, ‘Rf_findVarInFrame3’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
as.envlist.html:46:1 (as.envlist.Rd:10): Warning: missing </ul> before </div>
explicit.html:56:1 (explicit.Rd:17): Warning: missing </ul> before </div>
print.envlist.html:61:1 (print.envlist.Rd:18): Warning: missing </ul> before </div>
standardise_call.html:50:1 (standardise_call.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘boot.weighting.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PSAboot.Rd: Match
  balance.matching.Rd: cv.trans.psa
  boot.ctree.Rd: cv.trans.psa
  boot.matching.Rd: cv.trans.psa, Match
  boot.matchit.Rd: cv.trans.psa
  boot.rpart.Rd: cv.trans.psa
  boot.strata.Rd: cv.trans.psa
  boot.weighting.Rd: cv.trans.psa
  boxplot.PSAboot.balance.Rd: facet_wrap
  hist.PSAboot.Rd: geom_histogram
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
calculate_ps_weights.html:60:1 (calculate_ps_weights.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Kyu Ha Lee <klee@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee@hsph.harvard.edu"),
               person(given = "Sounak",
                      family = "Chakraborty",
                      role = "aut"),
               person(given = "Harrison",
                      family = "Reeder",
                      role = "aut"),
               person(given = c("", "Jianguo"),
                      family = "Sun",
                      role = "aut",
                      comment = "Tony"))
as necessary.
Found the following HTML validation problems:
create_alpha_string.html:56:1 (create_alpha_string.Rd:19): Warning: missing </ul> before </div>
create_tau_string.html:52:1 (create_tau_string.Rd:17): Warning: missing </ul> before </div>
eval_constraints.html:49:1 (eval_constraints.Rd:13): Warning: missing </ul> before </div>
get_prior_string_covariates.html:46:1 (get_prior_string_covariates.Rd:10): Warning: missing </ul> before </div>
trim_cols.html:56:1 (trim_cols.Rd:19): Warning: missing </ul> before </div>
trim_rows.html:56:1 (trim_rows.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
apply_mcmc.html:162:1 (apply_mcmc.Rd:87): Warning: missing </ul> before </div>
fix_col_names.html:50:1 (fix_col_names.Rd:12): Warning: missing </ul> before </div>
ps_message.html:50:1 (ps_message.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) qpc.Rd:43: Lost braces
    43 | S{Sulewski, P. (2020). \emph{Normal Distribution with Plasticizing Component,} Communications in Statistics ? Theory and Method 51(11), 3806-3835.}
       |  ^
Found the following HTML validation problems:
rcpp_ctap_simple.html:50:1 (rcpp_ctap_simple.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
replace_nas.html:46:1 (replace_nas.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pseudohouseholds.R’
Found the following HTML validation problems:
pool_performance_internal.html:61:1 (pool_performance_internal.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Neeraj Bokde <neerajdhanraj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neeraj",
                      family = "Bokde",
                      role = c("aut", "cre"),
                      email = "neerajdhanraj@gmail.com"),
               person(given = "Gualberto",
                      family = "Asencio-Cortes",
                      role = "aut"),
               person(given = "Francisco",
                      family = "Martinez-Alvarez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data1.Rd:14: Lost braces
    14 | The data set from {AbouRizk, S.M., Halpin, D.W., Wilson, J. R. (1994). \emph{Fitting beta distributions based on sample data.} Journal of Construction Engineering and Management 120(2), 288–305.}
       |                   ^
checkRd: (-1) data2.Rd:14: Lost braces; missing escapes or markup?
    14 | The data set presents the height of 99 five-year-old British boys in cm downloaded from {http://www.mas.ncl.ac.uk/njnsm/medfac/docs/intro.pdf.}
       |                                                                                         ^
Maintainer: ‘Oleg Sysoev <Oleg.Sysoev@liu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oleg",
                      family = "Sysoev",
                      role = c("aut", "cre"),
                      email = "oleg.sysoev@liu.se"),
               person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = "aut"),
               person(given = c("Katarina", "Ekholm"),
                      family = "Selling",
                      role = "aut"),
               person(given = "Lotta",
                      family = "Ekstrom",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plot.psicaTree.html:58:1 (plot.psicaTree.Rd:15): Warning: missing </ul> before </div>
predict.psicaTree.html:56:1 (predict.psicaTree.Rd:15): Warning: missing </ul> before </div>
print.psicaTree.html:51:1 (print.psicaTree.Rd:12): Warning: missing </ul> before </div>
prune.psicaTree.html:57:1 (prune.psicaTree.Rd:16): Warning: missing </ul> before </div>
snip.psicaTree.html:52:1 (snip.psicaTree.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) table1.Rd:14: Lost braces
    14 | The first data set from {Sulewski, P. (2017) \emph{A new test for independence in 2x2 contingency tables,} Acta Universitatis Lodziensis. Folia Oeconomica, 4(330), 55–75}
       |                         ^
checkRd: (-1) table3.Rd:14: Lost braces
    14 | The third data set from {Sulewski, P. (2021). \emph{Logarithmic Minimum Test for Independence in Three Way Con-tingency Table of Small Sizes.} Journal of Statistical Computation and Simulation 91(13), 2780-2799}
       |                         ^
Maintainer: ‘Claus Bendtsen <papyrus.bendtsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claus",
                      family = "Bendtsen.",
                      role = "aut",
                      email = "papyrus.bendtsen@gmail.com"),
               person(given = "Claus",
                      family = "Bendtsen",
                      role = "cre",
                      email = "papyrus.bendtsen@gmail.com"))
as necessary.
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Jim", "Ramsey.", "R", "port", "by", "Brian", "Ripley"),
                      family = "<Brian.Ripley@R-project.org>.",
                      role = "aut",
                      email = "Brian.Ripley@R-project.org"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "cre",
                      email = "Brian.Ripley@R-project.org"))
as necessary.
Maintainer: ‘Andre M. de Roos <A.M.deRoos@uva.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lenard Dome <lenarddome@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘psp.Rd’:
    \keyword{computational modelling; parameter space  [TRUNCATED]
  File ‘pspGlobal.Rd’:
    \keyword{computational modelling; parameter space  [TRUNCATED]
  File ‘psp_global.Rd’:
    \keyword{computational modelling; parameter space; [TRUNCATED]
Maintainer: ‘Haiyan Wang <hwang@ksu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luann", "C."),
                      family = "Jung",
                      role = "aut"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "hwang@ksu.edu"),
               person(given = "Diego",
                      family = "Maldonado",
                      role = "aut"),
               person(given = "Sharad",
                      family = "Silwal",
                      role = "aut"),
               person(given = "Siti",
                      family = "Tolos",
                      role = "aut"),
               person(given = "Suojin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘summary.riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testConstancy.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testEquality.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Qing",
                      family = "Fei",
                      role = "aut"))
as necessary.
Maintainer: ‘Blondeau Da Silva Stephane <blondeaudasilva@xlim.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane.",
                      role = "aut"),
               person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane",
                      role = "cre",
                      email = "blondeaudasilva@xlim.fr"))
as necessary.
Maintainer: ‘Pedro H. C. Sant'Anna <pedro.h.santanna@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pedro", "H.", "C."),
                      family = "Sant'Anna",
                      role = c("aut", "cre"),
                      email = "pedro.h.santanna@vanderbilt.edu"),
               person(given = "Xiaojun",
                      family = "Song",
                      role = "aut",
                      email = "sxj@gsm.pku.edu.cn"))
as necessary.
Maintainer: ‘Bo Liu <bl226@duke.edu>’

The Description field contains
  See Liu and Li (2023) <arXiv:2304.02740> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PStrata-package.Rd: lme4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PSTf-class.Rd: TraMineR
  cprob.Rd: TraMineR
  generate.Rd: TraMineR
  plot-PSTr.Rd: seqdef
  pmine.Rd: TraMineR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Huzhang Mao <huzhangmao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huzhang",
                      family = "Mao",
                      role = c("aut", "cre"),
                      email = "huzhangmao@gmail.com"),
               person(given = "Liang",
                      family = "Li",
                      role = "aut",
                      email = "LLi15@mdanderson.org"))
as necessary.
Found the following HTML validation problems:
confint.html:53:1 (confint.Rd:13): Warning: missing </ul> before </div>
print.html:80:1 (print.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
checkRd: (-1) dprime.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
is.psychobject.html:46:1 (is.psychobject.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Promax.html:159:1 (Promax.Rd:97): Warning: <h3> anchor "_sec_note" already defined
best.scales.html:272:1 (best.scales.Rd:172): Warning: <h3> anchor "_sec_note" already defined
cortest.mat.html:129:1 (cortest.mat.Rd:69): Warning: <h3> anchor "_sec_note" already defined
fa.parallel.html:227:1 (fa.parallel.Rd:133): Warning: <h3> anchor "_sec_note" already defined
skew.html:136:1 (skew.Rd:69): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
requiredPackages.html:63:1 (requiredPackages.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
SetUnitSystem.html:47:1 (SetUnitSystem.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coefficent_to_p.html:54:1 (coefficent_to_p.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Ken Knoblauch <ken.knoblauch@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Knoblauch",
                      role = "aut"),
               person(given = "Ken",
                      family = "Knoblauch",
                      role = "cre",
                      email = "ken.knoblauch@inserm.fr"))
as necessary.
Maintainer: ‘Didier G. Leibovici <GeotRYcs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Didier", "G."),
                    family = "Leibovici",
                    role = c("aut", "cre"),
                    email = "doi:10.18637/jss.v034.i10",
                    comment = "2010")
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = c("Alina", "Levine", "&", "Justin"),
                      family = "Bleich",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PTE.Rd’:
    \keyword{medicine,}
checkRd: (-1) PTE_bootstrap_inference.Rd:39-42: Lost braces
    39 |                                                         continuous = function(Xytrain){ #defalt is OLS regression
       |                                                                                       ^
checkRd: (-1) PTE_bootstrap_inference.Rd:43-47: Lost braces
    43 |                                                         incidence = function(Xytrain){ #default is logistic regression
       |                                                                                      ^
checkRd: (-1) PTE_bootstrap_inference.Rd:48-52: Lost braces
    48 |                                                         survival = function(Xytrain){ #default is Weibull regression
       |                                                                                     ^
checkRd: (-1) PTE_bootstrap_inference.Rd:66-68: Lost braces
    66 |                                         function(mod, Xyleftout){
       |                                                                 ^
checkRd: (-1) PTE_bootstrap_inference.Rd:74-77: Lost braces
    74 |                                         function(results, indices_1_1, indices_0_0, indices_0_1, indices_1_0){
       |                                                                                                              ^
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

The Description field contains
  available in Wang et al (2022) <arXiv:2209.08414>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jose M. Maisog <bravas02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "M."),
                      family = "Maisog",
                      role = c("aut", "cre"),
                      email = "bravas02@gmail.com"),
               person(given = "Yuan",
                      family = "Wang",
                      role = "aut"),
               person(given = "George",
                      family = "Luta",
                      role = "aut"),
               person(given = "Jianfei",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter DeWitt <peter.dewitt@cuanschutz.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mirko Signorelli <msignorelli.rpackages@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ron Wehrens <ron.wehrens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ptw-package.Rd:20-28: Lost braces
    20 | @Article{Bloemberg2010,
       |         ^
checkRd: (-1) ptw-package.Rd:30-38: Lost braces
    30 | Article{Wehrens2015,
       |        ^
Found the following HTML validation problems:
QCMetaFilenames.html:99:1 (QCMetaFilenames.Rd:48): Warning: missing </ul> before </div>
checkEnglishLocale.html:48:1 (checkEnglishLocale.Rd:11): Warning: missing </ul> before </div>
print.PTXQC_table.html:51:1 (print.PTXQC_table.Rd:12): Warning: missing </ul> before </div>
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: axis_labs
> ### Title: Apply labels from variables to axis-labels in plots.
> ### Aliases: axis_labs
> 
> ### ** Examples
> 
> data(kfm, package = "ISwR")
> require(sjlabelled, quietly = TRUE)

Attaching package: ‘sjlabelled’

The following object is masked from ‘package:ggplot2’:

    as_label

> kfm <- kfm |>
+   var_labels(
+     dl.milk = "Breast-milk intake (dl/day)",
+     sex = "Sex",
+     weight = "Child weight (kg)",
+     ml.suppl = "Milk substitute (ml/day)",
+     mat.weight = "Maternal weight (kg)",
+     mat.height = "Maternal height (cm)"
+   )
> 
> kfm |>
+   gf_point(weight ~ dl.milk) |>
+   gf_lm(col = 2, interval = "confidence", col = 2) |>
+   axis_labs()
Warning in rep(yes, length.out = len) :
  'x' is NULL so the result will be NULL
Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : 
  replacement has length zero
Calls: axis_labs -> ifelse
Execution halted
Found the following HTML validation problems:
inv_logit.html:46:1 (inv_logit.Rd:10): Warning: missing </ul> before </div>
round_pval.html:46:1 (round_pval.Rd:10): Warning: missing </ul> before </div>
stats_quotes.html:54:1 (stats_quotes.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’

The Description field contains
  <arXiv:1911.12445>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ma.Rd:62: Lost braces
    62 | \item{yi}{Numeric vector of length code{k} with observed effect size
       |                                        ^
checkRd: (-1) ma.Rd:65: Lost braces
    65 | \item{vi}{Numeric vector of length code{k} with sampling variances.}
       |                                        ^
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
checkRd: (-1) plotWordCloud.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{PubMed wordcloud using function 'wordcloud' of package {wordcloud}}
       |                                                               ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                  ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                                           ^
Maintainer: ‘Hyebin Song <hps5320@psu.edu>’

The Description field contains
  <arXiv:1711.08129>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tong",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "hetong007@gmail.com")
as necessary.
Maintainer: ‘Zachary Kurtz <zdkurtz@gmail.com>’

The Description field contains
  Müller, Richard Bonneau, Zachary Kurtz (2016) <arXiv:1605.07072>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.pulsar.html:54:1 (print.pulsar.Rd:15): Warning: missing </ul> before </div>
print.pulsar.refit.html:51:1 (print.pulsar.refit.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luis", "J."),
                    family = "Villanueva-Rivera",
                    role = c("aut", "cre"),
                    email = "ljvillanueva@coquipr.com")
as necessary.

The Description field contains
  (http://ljvillanueva.github.io/pumilio/).
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
get_pval_tstat.html:57:1 (get_pval_tstat.Rd:16): Warning: missing </ul> before </div>
get_rawpt.html:55:1 (get_rawpt.Rd:14): Warning: missing </ul> before </div>
make_model.html:50:1 (make_model.Rd:12): Warning: missing </ul> before </div>
plot.pumpgridresult.mdes.html:85:1 (plot.pumpgridresult.mdes.Rd:36): Warning: missing </ul> before </div>
plot.pumpgridresult.sample.html:85:1 (plot.pumpgridresult.sample.Rd:36): Warning: missing </ul> before </div>
run_grid.html:76:1 (run_grid.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mean2.html:46:1 (mean2.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘source_pmc.R’ ‘source_pubmed.R’ ‘source_pubtations.R’
Maintainer: ‘Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>’

The BugReports field in DESCRIPTION has
  https://github.com/richelbilderbeek/pureseqtmr/
which should likely be
  https://github.com/richelbilderbeek/pureseqtmr/issues
instead.
Found the following HTML validation problems:
parse_pureseqtm_proteome_text.html:47:1 (parse_pureseqtm_proteome_text.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Philip D. Waggoner <philip.waggoner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "philip.waggoner@gmail.com")
as necessary.
Found the following HTML validation problems:
get-attr.html:54:1 (get-attr.Rd:13): Warning: missing </ul> before </div>
progress_bars.html:117:1 (progress_bars.Rd:56): Warning: missing </ul> before </div>
reduce_right.html:111:1 (reduce_right.Rd:50): Warning: missing </ul> before </div>
update_list.html:66:1 (update_list.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pushbar-buttons.html:48:1 (pushbar-buttons.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
handle_output.html:58:1 (handle_output.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Vygantas Butkus <Vygantas.Butkus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vygantas",
                    family = "Butkus",
                    role = c("aut", "cre"),
                    email = "vygantas.butkus@gmail.com")
as necessary.
checkRd: (-1) DataSets.Rd:10: Lost braces; missing escapes or markup?
    10 | \format{the \code{PvarQuantileDF} is a \code{data.frame} with fields \code{prob} an {Qaunt}. 
       |                                                                                     ^
Maintainer: ‘Ryota Suzuki <suzuki@ef-prime.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ryota",
                      family = "Suzuki",
                      role = c("aut", "cre"),
                      email = "suzuki@ef-prime.com"),
               person(given = "Yoshikazu",
                      family = "Terada",
                      role = "aut",
                      email = "terada@sigmath.es.osaka-u.ac.jp"),
               person(given = "Hidetoshi",
                      family = "Shimodaira",
                      role = "aut",
                      email = "shimo@i.kyoto-u.ac.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘da.Rd’ ‘da_object_oriented_functions.R’
    ‘higher_level_disprop_analysis.R’ ‘lower_level_disprop_analysis.R’
    ‘print.da.Rd’
checkRd: (-1) pvlrt.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
checkRd: (-1) r_contin_table_zip.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
Maintainer: ‘Thiago Santos <thiago.santos@ufvjm.edu.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thiago",
                    family = "Santos",
                    role = c("aut", "cre"),
                    email = "thiago.santos@ufvjm.edu.br")
as necessary.
Maintainer: ‘Tianchen Xu <zjph602xutianchen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianchen",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "zjph602xutianchen@gmail.com",
                    comment = c(ORCID = "0000-0002-0102-7630"))
as necessary.
'library' or 'require' calls not declared from:
  ‘Hmisc’ ‘car’ ‘dplyr’ ‘ggplot2’
Maintainer: ‘Chris Aberson <chris.aberson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Aberson",
                    role = c("aut", "cre"),
                    email = "chris.aberson@gmail.com")
as necessary.
Maintainer: ‘Pengcheng Lu <plu2@kumc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pengcheng",
                      family = "Lu",
                      role = c("aut", "cre"),
                      email = "plu2@kumc.edu"),
               person(given = "Junhao",
                      family = "Liu",
                      role = "aut"),
               person(given = "Devin",
                      family = "Koestler",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pwrFDR.R’
checkRd: (-1) aid_st2.Rd:6: Escaped LaTeX specials: \&
Found the following HTML validation problems:
nested_data.html:68:1 (nested_data.Rd:21): Warning: missing </ul> before </div>
sim_normal.no.nesting.html:67:1 (sim_normal.no.nesting.Rd:21): Warning: missing </ul> before </div>
sim_normal.with.nesting.html:70:1 (sim_normal.with.nesting.Rd:23): Warning: missing </ul> before </div>
sim_poisson.no.nesting.html:67:1 (sim_poisson.no.nesting.Rd:21): Warning: missing </ul> before </div>
sim_tetrads.html:65:1 (sim_tetrads.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt8.0.Rd’:
    http://dx.doi.org/10.15141/S5159X
    http://dx.doi.org/10.1016/j.jdeveco.2012.10.001
  File ‘pwt8.1.Rd’:
    http://dx.doi.org/10.15141/S5NP4S
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt9.0.Rd’:
    https://doi.org/10.15141/S5J01T
  File ‘pwt9.1.Rd’:
    https://doi.org/10.15141/S50T0R
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
add_totals_to_df.html:64:1 (add_totals_to_df.Rd:19): Warning: missing </ul> before </div>
create_dummy_tibbles.html:46:1 (create_dummy_tibbles.Rd:10): Warning: missing </ul> before </div>
extract_section.html:54:1 (extract_section.Rd:14): Warning: missing </ul> before </div>
get_section.html:50:1 (get_section.Rd:12): Warning: missing </ul> before </div>
return_px.html:46:1 (return_px.Rd:10): Warning: missing </ul> before </div>
section_interval.html:50:1 (section_interval.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Tyler Burleigh [aut] (https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
  Authors@R: ‘Tyler Burleigh [aut] (twitter: https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (ORCID: <https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
Maintainer: ‘Minato Nakazawa <minato-nakazawa@umin.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Minato",
                    family = "Nakazawa",
                    role = c("aut", "cre"),
                    email = "minato-nakazawa@umin.net")
as necessary.
Found the following HTML validation problems:
clone.html:46:1 (clone.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) crosstab.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  univariate_plot.Rd: ggplot2, patchwork
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Tomasz",
                      family = "Zadlo",
                      role = "aut"))
as necessary.
checkRd: (-1) srswrRe.Rd:10: Lost braces
    10 |   \item{listRanef}{{\emph{ranef(model)}} object where {\emph{model}} is an { \emph{lmer}} object.}
       |                                                                            ^
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang@wpi.edu")
as necessary.

The Description field contains
  <arXiv:2005.00905>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ayush Agarwal<ayush.agarwal50@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ayush",
                      family = "Agarwal",
                      role = c("aut", "cre"),
                      email = "ayush.agarwal50@gmail.com"),
               person(given = "Dootika",
                      family = "Vats",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘qb_records.R’
Maintainer: ‘Ingo Rohlfing <i.rohlfing@uni-koeln.de>’

The BugReports field in DESCRIPTION has
  https://github.com/ingorohlfing/qcapower
which should likely be
  https://github.com/ingorohlfing/qcapower/issues
instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:260:1 (inst/NEWS.Rd:135): Warning: missing </ul> before </div>
NEWS.html:60:1 (inst/NEWS.Rd:29): Warning: <h4> anchor "CHANGED" already defined
NEWS.html:78:1 (inst/NEWS.Rd:39): Warning: <h4> anchor "CHANGED" already defined
NEWS.html:100:1 (inst/NEWS.Rd:50): Warning: <h4> anchor "FIXED" already defined
NEWS.html:167:1 (inst/NEWS.Rd:88): Warning: <h4> anchor "CHANGED" already defined
NEWS.html:198:1 (inst/NEWS.Rd:104): Warning: <h4> anchor "FIXED" already defined
NEWS.html:238:1 (inst/NEWS.Rd:127): Warning: <h4> anchor "NEW" already defined
Maintainer: ‘Jirka Lewandowski <jirka.lewandowski@wzb.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jirka",
                    family = "Lewandowski",
                    role = c("aut", "cre"),
                    email = "jirka.lewandowski@wzb.eu")
as necessary.
Maintainer: ‘Luca Scrucca <luca.scrucca@unipg.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Leanne", "K."),
                      family = "Kupers",
                      role = "aut"),
               person(given = "Ilja",
                      family = "Nolte",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Ilja", "M."),
                      family = "Nolte",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alireza Lorzadeh <alorzadeh@bcgsc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alireza",
                    family = "Lorzadeh",
                    role = c("aut", "cre"),
                    email = "alorzadeh@bcgsc.ca")
as necessary.
Found the following HTML validation problems:
mqcs.html:58:1 (mqcs.Rd:19): Warning: missing </ul> before </div>
mqcs.add.html:57:1 (mqcs.add.Rd:17): Warning: missing </ul> before </div>
npqcs.html:57:1 (npqcs.Rd:17): Warning: missing </ul> before </div>
npqcs.add.html:57:1 (npqcs.add.Rd:17): Warning: missing </ul> before </div>
plot.fdqcs.depth.html:103:1 (plot.fdqcs.depth.Rd:47): Warning: missing </ul> before </div>
plot.mqcs.html:105:1 (plot.mqcs.Rd:55): Warning: missing </ul> before </div>
plot.npqcs.html:109:1 (plot.npqcs.Rd:57): Warning: missing </ul> before </div>
plot.qcs.html:250:1 (plot.qcs.Rd:188): Warning: missing </ul> before </div>
qcd.html:95:1 (qcd.Rd:43): Warning: missing </ul> before </div>
qcs.add.html:81:1 (qcs.add.Rd:35): Warning: missing </ul> before </div>
Maintainer: ‘Tinniam V Ganesh<tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Xuejun Ma <yinuoyumi@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuejun",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "yinuoyumi@163.com"),
               person(given = "Jingxiao",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Jingke",
                      family = "Zhou",
                      role = "aut"))
as necessary.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tyler",
                    family = "Rinker",
                    role = c("aut", "cre"),
                    email = "tyler.rinker@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.view_data.html:51:1 (print.view_data.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
c.extracted.html:51:1 (c.extracted.Rd:12): Warning: missing </ul> before </div>
print.explain.html:51:1 (print.explain.Rd:12): Warning: missing </ul> before </div>
print.extracted.html:51:1 (print.extracted.Rd:12): Warning: missing </ul> before </div>
print.regexr.html:51:1 (print.regexr.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Deprecated.html:65:1 (Deprecated.Rd:20): Warning: missing </ul> before </div>
print.v_outer.html:55:1 (print.v_outer.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘David Jungreis <dbjungreis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Jungreis",
                      role = c("aut", "cre"),
                      email = "dbjungreis@gmail.com"),
               person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
AIT.more.html:60:1 (AIT.more.Rd:18): Warning: missing </ul> before </div>
AIT.obj.html:58:1 (AIT.obj.Rd:17): Warning: missing </ul> before </div>
CS.more.html:64:1 (CS.more.Rd:20): Warning: missing </ul> before </div>
CS.obj.html:64:1 (CS.obj.Rd:20): Warning: missing </ul> before </div>
KL.more.html:60:1 (KL.more.Rd:18): Warning: missing </ul> before </div>
KL.obj.html:58:1 (KL.obj.Rd:17): Warning: missing </ul> before </div>
MEANmeth.html:51:1 (MEANmeth.Rd:13): Warning: missing </ul> before </div>
QFASA.const.eqn.html:60:1 (QFASA.const.eqn.Rd:18): Warning: missing </ul> before </div>
chisq.CA.html:50:1 (chisq.CA.Rd:12): Warning: missing </ul> before </div>
comp.gen.pseudo.seals.html:71:1 (comp.gen.pseudo.seals.Rd:24): Warning: missing </ul> before </div>
create.d.mat.html:50:1 (create.d.mat.Rd:12): Warning: missing </ul> before </div>
gen.pseudo.seals.html:71:1 (gen.pseudo.seals.Rd:24): Warning: missing </ul> before </div>
mean_geometric.html:46:1 (mean_geometric.Rd:10): Warning: missing </ul> before </div>
testfordiff.ind.boot.html:54:1 (testfordiff.ind.boot.Rd:14): Warning: missing </ul> before </div>
testfordiff.ind.boot.fun.html:58:1 (testfordiff.ind.boot.fun.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
S_fromUL.html:51:1 (S_fromUL.Rd:12): Warning: missing </ul> before </div>
sum_counterdiag.html:53:1 (sum_counterdiag.Rd:13): Warning: missing </ul> before </div>
tr.html:46:1 (tr.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.MellinQF.html:55:1 (print.MellinQF.Rd:14): Warning: missing </ul> before </div>
print.MellinQF_ratio.html:55:1 (print.MellinQF_ratio.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Indranil Ghosh <indranilg49@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Indranil",
                    family = "Ghosh",
                    role = c("aut", "cre"),
                    email = "indranilg49@gmail.com")
as necessary.

The Description field contains
  theoretic models (Flitney and Abbott 2002) <arXiv:quant-ph/0208069>.
  1998) <arXiv:quant-ph/9804010>, Prisoner's Dilemma (J. Orlin Grabbe
  2005) <arXiv:quant-ph/0506219>, Two Person Duel (Flitney and Abbott
  2004) <arXiv:quant-ph/0305058>, Battle of the Sexes (Nawaz and Toor
  2004) <arXiv:quant-ph/0110096>, Hawk and Dove Game (Nawaz and Toor
  2010) <arXiv:quant-ph/0108075>, Newcomb's Paradox (Piotrowski and
  Sladkowski 2002) <arXiv:quant-ph/0202074> and Monty Hall Problem
  (Flitney and Abbott 2002) <arXiv:quant-ph/0109035>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emerson", "Luis", "de", "Santa", "Helena", "Wagner", "Santos", "de", "Lima"),
                      family = "<wagnersantos.ufs@hotmail.com>",
                      role = "aut",
                      email = "wagnersantos.ufs@hotmail.com"),
               person(given = c("Wagner", "Santos"),
                      family = "de Lima",
                      role = "cre",
                      email = "wagnersantos.ufs@hotmail.com"))
as necessary.
Found the following HTML validation problems:
checknames.html:52:1 (checknames.Rd:10): Warning: missing </ul> before </div>
glance.qgcompfit.html:63:1 (glance.qgcompfit.Rd:12): Warning: missing </ul> before </div>
homogeneity_test.html:53:1 (homogeneity_test.Rd:15): Warning: missing </ul> before </div>
tidy.qgcompfit.html:76:1 (tidy.qgcompfit.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
acc.html:54:1 (acc.Rd:14): Warning: missing </ul> before </div>
adjLD.html:83:1 (adjLD.Rd:33): Warning: missing </ul> before </div>
adjLDStat.html:83:1 (adjLDStat.Rd:33): Warning: missing </ul> before </div>
auc.html:50:1 (auc.Rd:12): Warning: missing </ul> before </div>
gblup.html:73:1 (gblup.Rd:27): Warning: missing </ul> before </div>
getGRM.html:73:1 (getGRM.Rd:27): Warning: missing </ul> before </div>
getLDsets.html:54:1 (getLDsets.Rd:14): Warning: missing </ul> before </div>
hwe.html:46:1 (hwe.Rd:10): Warning: missing </ul> before </div>
mergeGRM.html:47:1 (mergeGRM.Rd:10): Warning: missing </ul> before </div>
plotBayes.html:58:1 (plotBayes.Rd:16): Warning: missing </ul> before </div>
plotForest.html:99:1 (plotForest.Rd:42): Warning: missing </ul> before </div>
rnag.html:50:1 (rnag.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘qgis_run_algorithm_p.Rd’
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

The BugReports field in DESCRIPTION has
  https://github.com/SachaEpskamp/qgraph
which should likely be
  https://github.com/SachaEpskamp/qgraph/issues
instead.
Maintainer: ‘ManHsia Yang <ymh@tari.gov.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "ManHsia",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "ymh@tari.gov.tw")
as necessary.
checkRd: (-1) qif.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
qiita_api.html:83:1 (qiita_api.Rd:33): Warning: missing </ul> before </div>
Found the following HTML validation problems:
defunct.html:51:1 (defunct.Rd:17): Warning: missing </ul> before </div>
rpartD.html:168:1 (rpartD.Rd:45): Warning: <h4> anchor "Dichotomize-Single-Predictor" already defined
rpartD.html:185:1 (rpartD.Rd:57): Warning: <h4> anchor "Dichotomize-Multiple-Predictors" already defined
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
tokenize.html:230:1 (tokenize.Rd:113): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
sim.strings.html:102:1 (sim.strings.Rd:52): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Liam Bressler <liam.bressler@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liam",
                    family = "Bressler",
                    role = c("aut", "cre"),
                    email = "liam.bressler@yale.edu")
as necessary.
checkRd: (-1) qmethod-package.Rd:109: Lost braces
   109 |   \item Van Exel, J., and G. de Graaf, 2005. \emph{Q Methodology: A Sneak Preview}\cr \url{https://qmethodblog.files.wordpress.com/2016/01/qmethodologyasneakpreviewreferenceupdate.pdf}{Available at this link}.
       |                                                                                                                                                                                         ^
checkRd: (-1) qmethod-package.Rd:110: Lost braces
   110 |   \item Brown, S. R., 1980. \emph{Political subjectivity: Applications of Q methodology in political science}, New Haven, CT: Yale University Press.\cr \url{https://qmethodblog.files.wordpress.com/2016/01/brown-1980-politicalsubjectivity.pdf}{Available at this link}.
       |                                                                                                                                                                                                                                                   ^
Maintainer: ‘Juan Gea <juangea@geax.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Gea"),
                      family = "Rosat",
                      role = "aut"),
               person(given = c("Ramon", "Martínez", "Coscollà"),
                      family = ".",
                      role = "aut"),
               person(given = "Juan",
                      family = "Gea",
                      role = "cre",
                      email = "juangea@geax.net"))
as necessary.
Maintainer: ‘Wilson Jr. Aala <s98107020@gs.ncku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Wilson", "Jr."),
                    family = "Aala",
                    role = c("aut", "cre"),
                    email = "s98107020@gs.ncku.edu.tw")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
interpol.html:69:1 (interpol.Rd:20): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_qqboxplot.Rd: geom_boxplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Stephen Turner <vustephen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "vustephen@gmail.com")
as necessary.
Maintainer: ‘Wayne Oldford <rwoldford@uwaterloo.ca>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘qqtest.Rd’:
    https://doi.org/10.1080/00031305.2015.1090338
checkRd: (-1) hideLocation.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{trueLoc}{A vector of one or more numbers in the set {1, 2, ..., nSubjects} whose locations are to be hidden.}
       |                                                           ^
checkRd: (-1) hideLocation.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{nSubjects}{An integer larger than 1 used to define the set {1, 2, ..., nSubjects}.}
       |                                                                  ^
Maintainer: ‘Robert Stine  <stine@upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "Stine",
                    role = c("aut", "cre"),
                    email = "stine@upenn.edu")
as necessary.
Found the following HTML validation problems:
matrixInput.html:54:1 (matrixInput.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Xiaoyu Song <xs2148@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaoyu",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "xs2148@cumc.columbia.edu")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘qr_vcard.R’
Found the following HTML validation problems:
add_logo.html:90:1 (add_logo.Rd:41): Warning: missing </ul> before </div>
qr_vcard.html:134:1 (qr_vcard.Rd:68): Warning: missing </ul> before </div>
Maintainer: ‘Karl Gregory <gregorkb@stat.sc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Gregory",
                    role = c("aut", "cre"),
                    email = "gregorkb@stat.sc.edu")
as necessary.
Maintainer: ‘Bob Rudis <bob@rud.is>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Yan Li <bluefatterplaydota@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Li",
                      role = c("aut", "cre", "trl"),
                      email = "bluefatterplaydota@gmail.com"),
               person(given = "Matthew",
                      family = "Sperrin",
                      role = c("aut", "ctb")),
               person(given = "ClinRisk",
                      family = "Ltd.",
                      role = "cph"),
               person(given = c("Tjeerd", "Pieter"),
                      family = "van Staa",
                      role = c("aut", "ths")))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qris.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
qris.extend.html:62:1 (qris.extend.Rd:18): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘all_new_functions.R’
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:111:1 (inst/NEWS.Rd:44): Warning: missing </ul> before </div>
NEWS.html:71:1 (inst/NEWS.Rd:28): Warning: <h4> anchor "New-Features" already defined
NEWS.html:82:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "Bug-Fixes" already defined
NEWS.html:97:1 (inst/NEWS.Rd:40): Warning: <h4> anchor "New-Features" already defined
Maintainer: ‘Maria de los Angeles Resa <maria@stat.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "de", "los", "Angeles"),
                      family = "Resa",
                      role = c("aut", "cre"),
                      email = "maria@stat.columbia.edu"),
               person(given = "Birol",
                      family = "Emir",
                      role = "aut"),
               person(given = "Javier",
                      family = "Cabrera",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:159:1 (inst/NEWS.Rd:73): Warning: missing </ul> before </div>
NEWS.html:43:1 (inst/NEWS.Rd:17): Warning: <h4> anchor "New-Features" already defined
NEWS.html:58:1 (inst/NEWS.Rd:25): Warning: <h4> anchor "New-Features" already defined
NEWS.html:73:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "New-Features" already defined
NEWS.html:89:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "New-Features" already defined
NEWS.html:118:1 (inst/NEWS.Rd:58): Warning: <h4> anchor "New-Features" already defined
NEWS.html:145:1 (inst/NEWS.Rd:69): Warning: <h4> anchor "Bug-Fixes" already defined
'::' or ':::' imports not declared from:
  ‘simsalapar’ ‘stabledist’
Found the following HTML validation problems:
qrnn.initialize.html:68:1 (qrnn.initialize.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
catquo.html:46:1 (catquo.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Kuhn",
                    role = c("aut", "cre"),
                    email = "mxkuhn@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
File ‘qs/libs/qs.so’:
  Found non-API calls to R: ‘CLOENV’, ‘ENCLOS’, ‘FRAME’, ‘HASHTAB’,
    ‘IS_S4_OBJECT’, ‘LEVELS’, ‘OBJECT’, ‘PRENV’, ‘Rf_allocSExp’,
    ‘SETLEVELS’, ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FRAME’,
    ‘SET_HASHTAB’, ‘SET_PRENV’, ‘SET_S4_OBJECT’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
catquo.html:46:1 (catquo.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Found the following HTML validation problems:
cat_remote.html:56:1 (cat_remote.Rd:16): Warning: missing </ul> before </div>
create_ssh_connection.html:47:1 (create_ssh_connection.Rd:11): Warning: missing </ul> before </div>
get_default_qsub_config.html:47:1 (get_default_qsub_config.Rd:10): Warning: missing </ul> before </div>
instantiate_qsub_config.html:48:1 (instantiate_qsub_config.Rd:12): Warning: missing </ul> before </div>
is_job_running.html:46:1 (is_job_running.Rd:10): Warning: missing </ul> before </div>
is_qsub_config.html:46:1 (is_qsub_config.Rd:10): Warning: missing </ul> before </div>
is_remote_local.html:46:1 (is_remote_local.Rd:10): Warning: missing </ul> before </div>
ls_remote.html:56:1 (ls_remote.Rd:16): Warning: missing </ul> before </div>
mkdir_remote.html:57:1 (mkdir_remote.Rd:17): Warning: missing </ul> before </div>
qacct.html:46:1 (qacct.Rd:10): Warning: missing </ul> before </div>
qacct_remote.html:52:1 (qacct_remote.Rd:14): Warning: missing </ul> before </div>
qstat_j.html:46:1 (qstat_j.Rd:10): Warning: missing </ul> before </div>
qstat_j_remote.html:52:1 (qstat_j_remote.Rd:14): Warning: missing </ul> before </div>
qstat_remote.html:52:1 (qstat_remote.Rd:14): Warning: missing </ul> before </div>
qsub_retrieve.html:54:1 (qsub_retrieve.Rd:14): Warning: missing </ul> before </div>
rm_remote.html:64:1 (rm_remote.Rd:20): Warning: missing </ul> before </div>
test_qsub_config.html:46:1 (test_qsub_config.Rd:10): Warning: missing </ul> before </div>
write_remote.html:60:1 (write_remote.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
BoundsObj.html:90:1 (BoundsObj.Rd:40): Warning: missing </ul> before </div>
DR.html:50:1 (DR.Rd:12): Warning: missing </ul> before </div>
QTE.html:207:1 (QTE.Rd:119): Warning: missing </ul> before </div>
QTEparams.html:154:1 (QTEparams.Rd:77): Warning: missing </ul> before </div>
SE.html:84:1 (SE.Rd:34): Warning: missing </ul> before </div>
compute.MDiD.html:93:1 (compute.MDiD.Rd:43): Warning: missing </ul> before </div>
computeDiffSE.html:72:1 (computeDiffSE.Rd:20): Warning: missing </ul> before </div>
getlb.html:62:1 (getlb.Rd:19): Warning: missing </ul> before </div>
getub.html:62:1 (getub.Rd:19): Warning: missing </ul> before </div>
panel.checks.html:47:1 (panel.checks.Rd:10): Warning: missing </ul> before </div>
plot.BoundsObj.html:95:1 (plot.BoundsObj.Rd:40): Warning: missing </ul> before </div>
plot.QTE.html:120:1 (plot.QTE.Rd:55): Warning: missing </ul> before </div>
print.matrix1.html:47:1 (print.matrix1.Rd:10): Warning: missing </ul> before </div>
print.matrix2.html:47:1 (print.matrix2.Rd:10): Warning: missing </ul> before </div>
print.summary.BoundsObj.html:51:1 (print.summary.BoundsObj.Rd:12): Warning: missing </ul> before </div>
print.summary.QTE.html:51:1 (print.summary.QTE.Rd:12): Warning: missing </ul> before </div>
qteToTexreg.html:60:1 (qteToTexreg.Rd:14): Warning: missing </ul> before </div>
summary.QTE.html:51:1 (summary.QTE.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.band.qte.html:51:1 (print.band.qte.Rd:12): Warning: missing </ul> before </div>
print.bw.qte.html:51:1 (print.bw.qte.Rd:12): Warning: missing </ul> before </div>
print.qte.html:51:1 (print.qte.Rd:12): Warning: missing </ul> before </div>
print.summary.qte.html:51:1 (print.summary.qte.Rd:12): Warning: missing </ul> before </div>
print.test.qte.html:51:1 (print.test.qte.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
validate_dir_path.html:46:1 (validate_dir_path.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
calc_invsqrt_mat.html:46:1 (calc_invsqrt_mat.Rd:10): Warning: missing </ul> before </div>
calc_sqrt_mat.html:46:1 (calc_sqrt_mat.Rd:10): Warning: missing </ul> before </div>
process_inputs.html:83:1 (process_inputs.Rd:33): Warning: missing </ul> before </div>
rcpp_log_dmvnorm2.html:58:1 (rcpp_log_dmvnorm2.Rd:16): Warning: missing </ul> before </div>
subset_kinship.html:53:1 (subset_kinship.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
qtlcharts-shiny.html:120:1 (qtlcharts-shiny.Rd:106): Warning: missing </ul> before </div>
Maintainer: ‘Ivan D. Pavicevic <ivanp84@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ivan", "D."),
                    family = "Pavicevic",
                    role = c("aut", "cre"),
                    email = "ivanp84@gmail.com")
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhou",
                      family = "Ya-Hui",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elias", "Chaibub"),
                      family = "Neto",
                      role = "aut",
                      email = "echaibub@hotmail.com"),
               person(given = c("Brian", "S"),
                      family = "Yandell",
                      role = "aut",
                      email = "brian.yandell@wisc.edu"),
               person(given = c("Brian", "S."),
                      family = "Yandell",
                      role = "cre",
                      email = "brian.yandell@wisc.edu"))
as necessary.
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elias", "Chaibub"),
                      family = "Neto",
                      role = "aut",
                      email = "echaibub@hotmail.com"),
               person(given = c("Brian", "S."),
                      family = "yandell",
                      role = c("aut", "cre"),
                      email = "brian.yandell@wisc.edu"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pscdbp.Rd’:
    http://dx.doi.org/10.1371/journal.pgen.0020130
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘bic.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘mcmc.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
    http://dx.doi.org/10.1007/s10994-008-5057-7
  File ‘parents.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
checkRd: (-1) IPWE_mean_IndCen.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:61-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{case}{string. One of {"a", "b", "c"}, corresponding to three models.}
       |                            ^
checkRd: (-1) simJLSDdata.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:32-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
data_provided.html:55:1 (data_provided.Rd:15): Warning: missing </ul> before </div>
result_read_fb_mobility_data.html:69:1 (result_read_fb_mobility_data.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Siva Rajesh Kasa <sivarajesh.kasa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Kasa",
                      role = "aut"),
               person(given = c("Siva", "Rajesh"),
                      family = "Kasa",
                      role = "cre",
                      email = "sivarajesh.kasa@gmail.com"))
as necessary.
Maintainer: ‘Berwin A. Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Berwin", "A.", "Turlach", "R", "port", "by", "Andreas", "Weingessel", "<Andreas.Weingessel@ci.tuwien.ac.at>", "Fortran", "contributions", "from", "Cleve", "Moler"),
                      family = "dpodi/LINPACK)",
                      role = "aut",
                      email = "Andreas.Weingessel@ci.tuwien.ac.at",
                      comment = "a modified version of"),
               person(given = c("Berwin", "A."),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
checkRd: (-1) find_lcp.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:18-19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:23-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) als_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:13: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
check_existing_download.html:54:1 (check_existing_download.Rd:14): Warning: missing </ul> before </div>
check_for_warnings.html:46:1 (check_for_warnings.Rd:10): Warning: missing </ul> before </div>
construct_header.html:47:1 (construct_header.Rd:11): Warning: missing </ul> before </div>
export_responses_filedownload.html:56:1 (export_responses_filedownload.Rd:15): Warning: missing </ul> before </div>
export_responses_request.html:60:1 (export_responses_request.Rd:17): Warning: missing </ul> before </div>
infer_data_types.html:54:1 (infer_data_types.Rd:14): Warning: missing </ul> before </div>
qualtrics_response_codes.html:46:1 (qualtrics_response_codes.Rd:10): Warning: missing </ul> before </div>
wrapper_mc.html:50:1 (wrapper_mc.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.coefficients_textmodel.html:56:1 (print.coefficients_textmodel.Rd:15): Warning: missing </ul> before </div>
print.statistics_textmodel.html:56:1 (print.statistics_textmodel.Rd:15): Warning: missing </ul> before </div>
print.summary.textmodel.html:56:1 (print.summary.textmodel.Rd:15): Warning: missing </ul> before </div>
print.textmodel_wordfish.html:51:1 (print.textmodel_wordfish.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.network.html:50:1 (as.network.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_dots.html:50:1 (check_dots.Rd:12): Warning: missing </ul> before </div>
compute_mattr.html:54:1 (compute_mattr.Rd:13): Warning: missing </ul> before </div>
compute_msttr.html:51:1 (compute_msttr.Rd:13): Warning: missing </ul> before </div>
dfm_split_hyphenated_features.html:48:1 (dfm_split_hyphenated_features.Rd:10): Warning: missing </ul> before </div>
get_docvars.html:62:1 (get_docvars.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Joachim Zuckarelli <joachim@zuckarelli.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joachim",
                    family = "Zuckarelli",
                    role = c("aut", "cre"),
                    email = "joachim@zuckarelli.de")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Cinzia Viroli <cinzia.viroli@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Berrettini",
                      role = "aut"),
               person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = c("aut", "cre"),
                      email = "cinzia.viroli@unibo.it"))
as necessary.
Maintainer: ‘Zoe Ashwood <zashwood@law.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zoe",
                      family = "Ashwood",
                      role = c("aut", "cre"),
                      email = "zashwood@law.stanford.edu"),
               person(given = "Becky",
                      family = "Elias",
                      role = "aut",
                      email = "Becky.Elias@kingcounty.gov"),
               person(given = c("Daniel", "E."),
                      family = "Ho",
                      role = "aut",
                      email = "dho@law.stanford.edu"))
as necessary.
Found the following calls to attach():
File ‘quantmod/R/attachSymbols.R’:
  attach(NULL, pos = pos, name = DB$name)
  attach(NULL, pos = pos, name = DB$name)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Teng Fei <tfei@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Teng",
                      family = "Fei",
                      role = c("aut", "cre"),
                      email = "tfei@emory.edu"),
               person(given = "Tianwei",
                      family = "Yu",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
quant_est.html:75:1 (quant_est.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lipsitz",
                      role = "aut"),
               person(given = "Alexandre",
                      family = "Belloni",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"))
as necessary.
Found the following HTML validation problems:
plot-LagOperator.html:89:1 (plot-LagOperator.Rd:39): Warning: missing </ul> before </div>
quantspec-defunct.html:144:1 (quantspec-defunct.Rd:78): Warning: missing </ul> before </div>
Maintainer: ‘Salonik Resch <resc0059@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Salonik",
                    family = "Resch",
                    role = c("aut", "cre"),
                    email = "resc0059@umn.edu")
as necessary.

The Description field contains
  <arXiv:1411.4028>, and a variational quantum classifier (Schuld 2018)
  <arXiv:1804.00633>. Can be used with the gridsynth algorithm
  <arXiv:1212.6253> to perform decomposition into the Clifford+T set.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) quarries.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:20-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:23-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:26-28: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
dot-NormalizeStatus.html:58:1 (dot-NormalizeStatus.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
quarto_serve.html:73:1 (quarto_serve.Rd:27): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘quax.Rd’
Maintainer: ‘Laura Anderlucci <laura.anderlucci@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = "aut"),
               person(given = "Laura",
                      family = "Anderlucci",
                      role = c("aut", "cre"),
                      email = "laura.anderlucci@unibo.it"))
as necessary.
Found the following HTML validation problems:
prefix_operators_name.html:46:1 (prefix_operators_name.Rd:10): Warning: missing </ul> before </div>
queryBuilderConfigClass.html:290:1 (queryBuilderConfigClass.Rd:159): Warning: missing </ul> before </div>
queryBuilderConfigClass.html:129:1 (queryBuilderConfigClass.Rd:64): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:135:1 (queryBuilderConfigClass.Rd:68): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:160:1 (queryBuilderConfigClass.Rd:83): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:166:1 (queryBuilderConfigClass.Rd:87): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:191:1 (queryBuilderConfigClass.Rd:102): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:197:1 (queryBuilderConfigClass.Rd:106): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:220:1 (queryBuilderConfigClass.Rd:119): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:226:1 (queryBuilderConfigClass.Rd:123): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:251:1 (queryBuilderConfigClass.Rd:138): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:267:1 (queryBuilderConfigClass.Rd:148): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:273:1 (queryBuilderConfigClass.Rd:152): Warning: <h5> anchor "Arguments" already defined
substitute_q.html:50:1 (substitute_q.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
escape_regex.html:48:1 (escape_regex.Rd:11): Warning: missing </ul> before </div>
first_non_null.html:50:1 (first_non_null.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
summary.queue_list.html:51:1 (summary.queue_list.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Pedro Canadilla <pedro.canadilla@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pedro",
                    family = "Canadilla",
                    role = c("aut", "cre"),
                    email = "pedro.canadilla@gmail.com")
as necessary.
Found the following HTML validation problems:
hasBbox.html:58:1 (hasBbox.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Linares Daniel <danilinares@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
aic.html:46:1 (aic.Rd:10): Warning: missing </ul> before </div>
avbootstrap.html:56:1 (avbootstrap.Rd:16): Warning: missing </ul> before </div>
logliks.html:48:1 (logliks.Rd:11): Warning: missing </ul> before </div>
parbootstrap.html:46:1 (parbootstrap.Rd:10): Warning: missing </ul> before </div>
sse.html:46:1 (sse.Rd:10): Warning: missing </ul> before </div>
summary.quickpsy.html:53:1 (summary.quickpsy.Rd:13): Warning: missing </ul> before </div>
thresholds.html:55:1 (thresholds.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) display_table.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{normtest}{A character indicating test of normality, the default method is \code{\link{shapiro.test}} when sample size no more than 5000, otherwise \code{\link[nortest]{lillie.test}} {Kolmogorov-Smirnov} is used, see package \strong{nortest} for more methods.Use 'shapiro.test', 'lillie.test', 'ad.test', etc to specify methods.}
       |                                                                                                                                                                                             ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘quickReg.Rmd’ using rmarkdown

Quitting from quickReg.Rmd:130-162 [plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    ▆
 1. └─ggplot2::labs(list(title = "Regression Model", x = "variables"))
 2.   └─ggplot2::class_labels(args)
 3.     └─S7::new_object(labels)
 4.       └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'quickReg.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘quickReg.Rmd’

SUMMARY: processing the following file failed:
  ‘quickReg.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘A. Luise Kuehn <luise.kuehn@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "Luise"),
                    family = "Kuehn",
                    role = c("aut", "cre"),
                    email = "luise.kuehn@uni-greifswald.de")
as necessary.
Found the following HTML validation problems:
first_non_na.html:46:1 (first_non_na.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
augment.html:51:1 (augment.Rd:12): Warning: missing </ul> before </div>
glance.html:50:1 (glance.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Radford Neal <radfordneal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Radford",
                    family = "Neal",
                    role = c("aut", "cre"),
                    email = "radfordneal@gmail.com")
as necessary.
File ‘quotedargs/libs/quotedargs.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘LEVELS’, ‘PRCODE’, ‘PRENV’,
    ‘PRVALUE’, ‘Rf_allocSExp’, ‘SETLEVELS’, ‘SET_NAMED’, ‘SET_PRCODE’,
    ‘SET_PRENV’, ‘SET_PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Found the following HTML validation problems:
mse.InteractionClassification.html:54:1 (mse.InteractionClassification.Rd:13): Warning: missing </ul> before </div>
mse.payoffs.html:52:1 (mse.payoffs.Rd:12): Warning: missing </ul> before </div>
summary.InteractionClassification.html:54:1 (summary.InteractionClassification.Rd:13): Warning: missing </ul> before </div>
summary.payoffs.html:51:1 (summary.payoffs.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Vitor Marques <vmrodriguespro@gmail.com>’

The Description field contains
  <arXiv:quant-ph/9706062v2>; C. Godsil (2011) <arXiv:1103.2578v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
check_comments.html:50:1 (check_comments.Rd:12): Warning: missing </ul> before </div>
deprecated.html:72:1 (deprecated.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Obadia <thomas.obadia@pasteur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pierre-Yves",
                      family = "Boelle",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Obadia",
                      role = c("aut", "cre"),
                      email = "thomas.obadia@pasteur.fr"))
as necessary.
checkRd: (-1) est.R0.ML.Rd:98: Lost braces
    98 | Supplementary Material S1 from \doi{10.1186/1472-6947-12-147}{Obadia et al., 2012}.
       |                                                              ^
checkRd: (-1) plot.R0.R.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from one estimation method.
       |                                                      ^
checkRd: (-1) plot.R0.sR.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from an
       |                                                      ^
Maintainer: ‘Denise Rava <drava@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denise",
                    family = "Rava",
                    role = c("aut", "cre"),
                    email = "drava@ucsd.edu")
as necessary.

The Description field contains
  selection process. Rava, D. and Xu, R. (2020) <arXiv:2003.09460>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) do_admb.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_pars.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Andrea Fasulo <fasulo@istat.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrea", "Fasulo,Giulio", "Barcaroli,Stefano", "Falorsi,Alessio", "Guandalini,Daniela", "Pagliuca,Marco", "Dionisio"),
                      family = "Terribili",
                      role = "aut"),
               person(given = "Andrea",
                      family = "Fasulo",
                      role = "cre",
                      email = "fasulo@istat.it"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2country
which should likely be
  https://github.com/oobianom/r2country/issues
instead.
Found the following HTML validation problems:
d3-shiny.html:68:1 (d3-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Robin Van Oirbeek <robin.vanoirbeek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Van Oirbeek",
                    role = c("aut", "cre"),
                    email = "robin.vanoirbeek@gmail.com")
as necessary.
Found the following HTML validation problems:
print.R2.html:51:1 (print.R2.Rd:12): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  runMLwiN.Rd: mcmc.list
  sixway.Rd: mcmc, mcmc.list
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
extract-methods-igls.html:68:1 (extract-methods-igls.Rd:25): Warning: missing </ul> before </div>
extract-methods-mcmc.html:68:1 (extract-methods-mcmc.Rd:25): Warning: missing </ul> before </div>
formula.mlwinfitIGLS.html:55:1 (formula.mlwinfitIGLS.Rd:14): Warning: missing </ul> before </div>
formula.mlwinfitMCMC.html:55:1 (formula.mlwinfitMCMC.Rd:14): Warning: missing </ul> before </div>
summary.mlwinfitIGLS.html:51:1 (summary.mlwinfitIGLS.Rd:12): Warning: missing </ul> before </div>
summary.mlwinfitMCMC.html:51:1 (summary.mlwinfitMCMC.Rd:12): Warning: missing </ul> before </div>
Found the following calls to attach():
File ‘R2OpenBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
as.fmap.html:46:1 (as.fmap.Rd:10): Warning: missing </ul> before </div>
decorate.html:50:1 (decorate.Rd:12): Warning: missing </ul> before </div>
decorate.WrappedModel.html:57:1 (decorate.WrappedModel.Rd:15): Warning: missing </ul> before </div>
decorate.default.html:59:1 (decorate.default.Rd:16): Warning: missing </ul> before </div>
decorate.earth.html:55:1 (decorate.earth.Rd:14): Warning: missing </ul> before </div>
decorate.elm.html:55:1 (decorate.elm.Rd:14): Warning: missing </ul> before </div>
decorate.randomForest.html:55:1 (decorate.randomForest.Rd:14): Warning: missing </ul> before </div>
decorate.svm.formula.html:55:1 (decorate.svm.formula.Rd:14): Warning: missing </ul> before </div>
decorate.train.html:51:1 (decorate.train.Rd:12): Warning: missing </ul> before </div>
verify.html:54:1 (verify.Rd:14): Warning: missing </ul> before </div>
verify.default.html:55:1 (verify.default.Rd:14): Warning: missing </ul> before </div>
verify.train.html:63:1 (verify.train.Rd:18): Warning: missing </ul> before </div>
verify.xgb.Booster.html:79:1 (verify.xgb.Booster.Rd:30): Warning: missing </ul> before </div>
write.fmap.html:50:1 (write.fmap.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rtf_page_footer.html:136:1 (rtf_page_footer.Rd:72): Warning: missing </ul> before </div>
rtf_page_header.html:136:1 (rtf_page_header.Rd:72): Warning: missing </ul> before </div>
Found the following HTML validation problems:
power_studies_results.html:47:1 (power_studies_results.Rd:11): Warning: missing </ul> before </div>
pvaluecdf.html:47:1 (pvaluecdf.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2shortcode
which should likely be
  https://github.com/oobianom/r2shortcode/issues
instead.
Found the following calls to attach():
File ‘R2WinBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
dot-m_multi_spec.html:52:1 (dot-m_multi_spec.Rd:13): Warning: missing </ul> before </div>
m_stop_animate.html:47:1 (m_stop_animate.Rd:11): Warning: missing </ul> before </div>
m_viewer_spec.html:98:1 (m_viewer_spec.Rd:43): Warning: missing </ul> before </div>
r3dmol-shiny.html:68:1 (r3dmol-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Sam Wilks <sw463@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sam",
                    family = "Wilks",
                    role = c("aut", "cre"),
                    email = "sw463@cam.ac.uk")
as necessary.
Maintainer: ‘Thomas Bock <thsteinbock@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Bock",
                    role = c("aut", "cre"),
                    email = "thsteinbock@web.de")
as necessary.
Found the following HTML validation problems:
makevec_prop.html:50:1 (makevec_prop.Rd:12): Warning: missing </ul> before </div>
rot_vector.html:46:1 (rot_vector.Rd:10): Warning: missing </ul> before </div>
show_lineup.html:46:1 (show_lineup.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ian G. Taylor <Ian.Taylor@noaa.gov>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) r4ss-package.Rd:9: Lost braces; missing escapes or markup?
     9 | A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.19.01, from April 2022).
       |                                                                                                                                                                                                                                                                                                                                                                                                ^
Found the following HTML validation problems:
add_legend.html:104:1 (add_legend.Rd:48): Warning: missing </ul> before </div>
get_tuning_table.html:74:1 (get_tuning_table.Rd:28): Warning: missing </ul> before </div>
get_tv_parlabs.html:51:1 (get_tv_parlabs.Rd:13): Warning: missing </ul> before </div>
is.wholenumber.html:52:1 (is.wholenumber.Rd:13): Warning: missing </ul> before </div>
sspar.html:69:1 (sspar.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
expand_od_pairs.html:55:1 (expand_od_pairs.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) extract_class.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) extract_class.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) extract_class.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
Repository.html:83:1 (Repository.Rd:117): Warning: <h5> anchor "Usage" already defined
Repository.html:116:1 (Repository.Rd:138): Warning: <h5> anchor "Usage" already defined
Repository.html:122:1 (Repository.Rd:142): Warning: <h5> anchor "Arguments" already defined
Repository.html:145:1 (Repository.Rd:155): Warning: <h5> anchor "Usage" already defined
Repository.html:151:1 (Repository.Rd:159): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
as.list.R6.html:52:1 (as.list.R6.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) post_RA_fits.Rd:61: Lost braces; missing escapes or markup?
    61 |     \item{\code{H(po_{bm_{n.bm}}, po_act)}:}{ last benchmark prior bm_{n.bm} inducing the fit \code{fits.bm[[n.bm]]} and actual prior}
       |                                                                       ^
Maintainer: ‘Andrew Taylor Burchill <andrew.burchill@asu.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘brute_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘codes_to_colors.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘exampleGUI.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘how_many.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘how_robust.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘rabi.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘rs_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘simple_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘tweaked_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ao_get_leaners_progress_by_course.R’
Found the following HTML validation problems:
plotPC.html:50:1 (plotPC.Rd:12): Warning: missing </ul> before </div>
plotPP.html:62:1 (plotPP.Rd:18): Warning: missing </ul> before </div>
plotUMINoise.html:54:1 (plotUMINoise.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Bass_ind_skeleton.html:46:1 (Bass_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Bass_pop_skeleton.html:46:1 (Bass_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Bass_spatial_skeleton.html:46:1 (Bass_spatial_skeleton.Rd:10): Warning: missing </ul> before </div>
Bream_ind_skeleton.html:46:1 (Bream_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Bream_pop_skeleton.html:46:1 (Bream_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Bream_spatial_skeleton.html:46:1 (Bream_spatial_skeleton.Rd:10): Warning: missing </ul> before </div>
ClamF_ind_skeleton.html:46:1 (ClamF_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
ClamF_pop_skeleton.html:46:1 (ClamF_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Clam_ind_skeleton.html:46:1 (Clam_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Clam_pop_skeleton.html:46:1 (Clam_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Mussel_ind_skeleton.html:46:1 (Mussel_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Mussel_pop_skeleton.html:46:1 (Mussel_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Mussel_spatial_skeleton.html:46:1 (Mussel_spatial_skeleton.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
chartJSRadarOutput.html:54:1 (chartJSRadarOutput.Rd:14): Warning: missing </ul> before </div>
chartJSRadar_html.html:66:1 (chartJSRadar_html.Rd:20): Warning: missing </ul> before </div>
renderChartJSRadar.html:54:1 (renderChartJSRadar.Rd:14): Warning: missing </ul> before </div>
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘José Matute <jmatuteflores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.rcorr.html:51:1 (print.rcorr.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_character.html:46:1 (as_character.Rd:10): Warning: missing </ul> before </div>
as_duration.html:46:1 (as_duration.Rd:10): Warning: missing </ul> before </div>
as_factor.html:50:1 (as_factor.Rd:12): Warning: missing </ul> before </div>
copy_attr.html:54:1 (copy_attr.Rd:14): Warning: missing </ul> before </div>
deregister.html:63:1 (deregister.Rd:21): Warning: missing </ul> before </div>
fix_smart.html:50:1 (fix_smart.Rd:12): Warning: missing </ul> before </div>
indexr.html:66:1 (indexr.Rd:20): Warning: missing </ul> before </div>
render.html:50:1 (render.Rd:12): Warning: missing </ul> before </div>
render.datatables.html:55:1 (render.datatables.Rd:14): Warning: missing </ul> before </div>
render.plotly.html:55:1 (render.plotly.Rd:14): Warning: missing </ul> before </div>
store.html:54:1 (store.Rd:14): Warning: missing </ul> before </div>
write_parquet.html:54:1 (write_parquet.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pdp_plot.html:90:1 (pdp_plot.Rd:38): Warning: missing </ul> before </div>
print.crtree.predict.html:55:1 (print.crtree.predict.Rd:14): Warning: missing </ul> before </div>
print.gbt.predict.html:55:1 (print.gbt.predict.Rd:14): Warning: missing </ul> before </div>
print.logistic.predict.html:55:1 (print.logistic.predict.Rd:14): Warning: missing </ul> before </div>
print.mnl.predict.html:55:1 (print.mnl.predict.Rd:14): Warning: missing </ul> before </div>
print.nb.predict.html:55:1 (print.nb.predict.Rd:14): Warning: missing </ul> before </div>
print.nn.predict.html:55:1 (print.nn.predict.Rd:14): Warning: missing </ul> before </div>
print.regress.predict.html:55:1 (print.regress.predict.Rd:14): Warning: missing </ul> before </div>
print.rforest.predict.html:55:1 (print.rforest.predict.Rd:14): Warning: missing </ul> before </div>
print_predict_model.html:58:1 (print_predict_model.Rd:16): Warning: missing </ul> before </div>
render.DiagrammeR.html:55:1 (render.DiagrammeR.Rd:14): Warning: missing </ul> before </div>
varimp.html:62:1 (varimp.Rd:18): Warning: missing </ul> before </div>
varimp_plot.html:62:1 (varimp_plot.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.conjoint.predict.html:55:1 (print.conjoint.predict.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Doug Nychka <nychka@mines.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Doug",
                      family = "Nychka",
                      role = c("aut", "cre"),
                      email = "nychka@mines.edu"),
               person(given = "Eric",
                      family = "Gilleland",
                      role = "aut"),
               person(given = "Liangying",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Tim",
                      family = "Hoar",
                      role = "aut"),
               person(given = "Kate",
                      family = "Young",
                      role = "aut"))
as necessary.
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "david.morina@uab.cat",
                      comment = "Barcelona Graduate School of Mathematics"),
               person(given = "Manuel",
                      family = "Higueras",
                      role = "aut",
                      comment = "Basque Center for Applied Mathematics"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut",
                      comment = "Universitat Autònoma de Barcelona"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Mark Hogue <mark.hogue.chp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Hogue",
                    role = c("aut", "cre"),
                    email = "mark.hogue.chp@gmail.com")
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johannes",
                      family = "Burkhardt",
                      role = c("aut", "cre"),
                      email = "johannes.burkhardt@gmail.com"),
               person(given = "Matthias",
                      family = "Bannert",
                      role = "aut",
                      email = "matthias.bannert@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_element.Rd’
Found the following HTML validation problems:
popsd.html:53:1 (popsd.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
agg_supertransparent.html:117:1 (agg_supertransparent.Rd:55): Warning: missing </ul> before </div>
Found the following HTML validation problems:
RagGrid-shiny.html:68:1 (RagGrid-shiny.Rd:25): Warning: missing </ul> before </div>
depPath.html:46:1 (depPath.Rd:10): Warning: missing </ul> before </div>
formatColumns.html:55:1 (formatColumns.Rd:15): Warning: missing </ul> before </div>
getDeps.html:50:1 (getDeps.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
embed_databricks.html:84:1 (embed_databricks.Rd:32): Warning: missing </ul> before </div>
ragnar_chunks_view.html:48:1 (ragnar_chunks_view.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.blank.html:50:1 (is.blank.Rd:12): Warning: missing </ul> before </div>
price_with_intensity_link.html:118:1 (price_with_intensity_link.Rd:55): Warning: missing </ul> before </div>
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dione", "Pereira"),
                      family = "Cardoso",
                      role = c("aut", "cre"),
                      email = "cardoso.dione@gmail.com"),
               person(given = c("Edilson", "Marcelino"),
                      family = "Silva",
                      role = "aut"),
               person(given = c("Paulo", "Cesar"),
                      family = "Ossani",
                      role = "aut"),
               person(given = c("Marx", "Leandro", "Naves"),
                      family = "Silva",
                      role = "ctb"),
               person(given = c("Joel", "Augusto"),
                      family = "Muniz",
                      role = "ctb"),
               person(given = c("Daniel", "Furtado"),
                      family = "Ferreira",
                      role = "ctb"),
               person(given = c("Junior", "Cesar"),
                      family = "Avanzi",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
  File ‘RainFallExample.Rd’:
    \keyword{
          Erosivity index; R-Factor; Universal [TRUNCATED]
  File ‘RainfallErosivityFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
Maintainer: ‘Jost von Hardenberg <j.vonhardenberg@isac.cnr.it>’

The BugReports field in DESCRIPTION has
  https://github.com/jhardenberg/rainfarmr
which should likely be
  https://github.com/jhardenberg/rainfarmr/issues
instead.
Maintainer: ‘Kory D. Johnson <korydjohnson@gmail.com>’

The Description field contains
  <arXiv:1510.06322>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Erica Ponzi <erica.ponzi@medisin.uio.no>’

The Description field contains
  <arXiv:2101.09110>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
data_heatmap.html:62:1 (data_heatmap.Rd:18): Warning: missing </ul> before </div>
get_final_decomposition_robustH.html:58:1 (get_final_decomposition_robustH.Rd:16): Warning: missing </ul> before </div>
get_individual_decomposition_robustH.html:63:1 (get_individual_decomposition_robustH.Rd:21): Warning: missing </ul> before </div>
get_joint_decomposition_robustH.html:54:1 (get_joint_decomposition_robustH.Rd:14): Warning: missing </ul> before </div>
get_joint_scores_robustH.html:78:1 (get_joint_scores_robustH.Rd:30): Warning: missing </ul> before </div>
get_sv_threshold.html:50:1 (get_sv_threshold.Rd:12): Warning: missing </ul> before </div>
get_wedin_bound_samples.html:58:1 (get_wedin_bound_samples.Rd:16): Warning: missing </ul> before </div>
sim_dist.html:54:1 (sim_dist.Rd:14): Warning: missing </ul> before </div>
wedin_bound_resampling.html:58:1 (wedin_bound_resampling.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Phil Mike Jones <philmikejones@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Found the following HTML validation problems:
Rtimer.html:107:1 (Rtimer.Rd:63): Warning: <h5> anchor "Usage" already defined
Rtimer.html:126:1 (Rtimer.Rd:74): Warning: <h5> anchor "Returns" already defined
Rtimer.html:143:1 (Rtimer.Rd:83): Warning: <h5> anchor "Usage" already defined
Rtimer.html:149:1 (Rtimer.Rd:87): Warning: <h5> anchor "Arguments" already defined
Rtimer.html:162:1 (Rtimer.Rd:94): Warning: <h5> anchor "Returns" already defined
Rtimer.html:179:1 (Rtimer.Rd:103): Warning: <h5> anchor "Usage" already defined
Rtimer.html:185:1 (Rtimer.Rd:107): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Veronica Nava <veronicanava245@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Veronica",
                      family = "Nava",
                      role = c("aut", "cre"),
                      email = "veronicanava245@gmail.com"),
               person(given = c("Maria", "Luce"),
                      family = "Frezzotti",
                      role = "ctb"),
               person(given = "Barbara",
                      family = "Leoni",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘RamanMP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: peak.finder
> ### Title: Peaks identification
> ### Aliases: peak.finder
> ### Keywords: peaks
> 
> ### ** Examples
> 
> data("MPdatabase")
> peak.data<-peak.finder(MPdatabase[,c(1,7)], threshold = 500, m=7)
Error: <ggplot2::element_text> object properties are invalid:
- @size must be <NULL>, <integer>, or <double>, not <character>
Execution halted
Maintainer: ‘Chapman Siu <chpmn.siu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chapman",
                    family = "Siu",
                    role = c("aut", "cre"),
                    email = "chpmn.siu@gmail.com")
as necessary.
Found the following HTML validation problems:
Unlist.html:48:1 (Unlist.Rd:11): Warning: missing </ul> before </div>
satisfy.html:46:1 (satisfy.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
amAxisBreaks.html:69:1 (amAxisBreaks.Rd:27): Warning: missing </ul> before </div>
updateAmPieChart.html:57:1 (updateAmPieChart.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
amChartsOutput.html:58:1 (amChartsOutput.Rd:16): Warning: missing </ul> before </div>
getCurrentStockData.html:123:1 (getCurrentStockData.Rd:60): Warning: missing </ul> before </div>
renderAmCharts.html:55:1 (renderAmCharts.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Xinwei Ma <x1ma@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matias", "D."),
                      family = "Cattaneo",
                      role = "aut"),
               person(given = "Paul",
                      family = "Cheung",
                      role = "aut"),
               person(given = "Xinwei",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "x1ma@ucsd.edu"),
               person(given = "Yusufcan",
                      family = "Masatlioglu",
                      role = "aut"),
               person(given = "Elchin",
                      family = "Suleymanov",
                      role = "aut"))
as necessary.

The Description field contains
  Cattaneo, Ma, Masatlioglu and Suleymanov (2020) <arXiv:1712.03448> and
  Cattaneo, Cheung, Ma, and Masatlioglu (2022) <arXiv:2110.10650>, which
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.ramchoiceRevealAtte.html:47:1 (print.ramchoiceRevealAtte.Rd:10): Warning: missing </ul> before </div>
print.ramchoiceRevealPref.html:47:1 (print.ramchoiceRevealPref.Rd:10): Warning: missing </ul> before </div>
print.ramchoiceRevealPrefModel.html:47:1 (print.ramchoiceRevealPrefModel.Rd:10): Warning: missing </ul> before </div>
summary.ramchoiceRevealAtte.html:47:1 (summary.ramchoiceRevealAtte.Rd:10): Warning: missing </ul> before </div>
summary.ramchoiceRevealPref.html:47:1 (summary.ramchoiceRevealPref.Rd:10): Warning: missing </ul> before </div>
summary.ramchoiceRevealPrefModel.html:47:1 (summary.ramchoiceRevealPrefModel.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Zhiyong Zhang <zzhang4@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zzhang4@nd.edu"),
               person(given = "Jack",
                      family = "McArdle",
                      role = "aut"),
               person(given = "Aki",
                      family = "Hamagami",
                      role = "aut"),
               person(given = c("&", "Kevin"),
                      family = "Grimm",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ramEffectSE.html:60:1 (ramEffectSE.Rd:21): Warning: missing </ul> before </div>
ramFlip.html:49:1 (ramFlip.Rd:16): Warning: missing </ul> before </div>
ramIndex.html:48:1 (ramIndex.Rd:15): Warning: missing </ul> before </div>
ramMatrix.html:47:1 (ramMatrix.Rd:14): Warning: missing </ul> before </div>
ramParseLavaan.html:61:1 (ramParseLavaan.Rd:22): Warning: missing </ul> before </div>
ramPathBridge.html:61:1 (ramPathBridge.Rd:22): Warning: missing </ul> before </div>
ramRmOne.html:49:1 (ramRmOne.Rd:16): Warning: missing </ul> before </div>
ramUniquePath.html:49:1 (ramUniquePath.Rd:16): Warning: missing </ul> before </div>
summary.RAMpath.html:78:1 (summary.RAMpath.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Zach Branson <zach@stat.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zach",
                    family = "Branson",
                    role = c("aut", "cre"),
                    email = "zach@stat.cmu.edu")
as necessary.

The Description field contains
  variable. See Branson (2021) <arXiv:1804.08760> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

The Description field contains
  <arXiv:1809.05212>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘randcorr-package.Rd’:
    \keyword{matrix,}
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Grace",
                      family = "Deng",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu"))
as necessary.
Found the following HTML validation problems:
argument_convention.html:100:1 (argument_convention.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Ron Ammar <ron.ammar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Ammar",
                    role = c("aut", "cre"),
                    email = "ron.ammar@gmail.com")
as necessary.
Maintainer: ‘Peter Langfelder <peter.langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lin",
                      family = "Song",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Maintainer: ‘Joseph J. Lee <joseph.j.lee@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "J."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "joseph.j.lee@post.harvard.edu"),
               person(given = "Tirthankar",
                      family = "Dasgupta",
                      role = "aut"))
as necessary.
Maintainer: ‘D. Labes <detlewlabes@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "D.",
                    family = "Labes",
                    role = c("aut", "cre"),
                    email = "detlewlabes@gmx.de")
as necessary.
checkRd: (-1) makeDesignMatrix.Rd:16: Lost braces; missing escapes or markup?
    16 | is randomized to a certain treatment {j}, the entry of \code{(i,j)} of the
       |                                      ^
Found the following HTML validation problems:
TV.html:46:1 (TV.Rd:10): Warning: missing </ul> before </div>
cash-assessment-method.html:51:1 (cash-assessment-method.Rd:12): Warning: missing </ul> before </div>
cash-comparison-method.html:51:1 (cash-comparison-method.Rd:12): Warning: missing </ul> before </div>
cash-derFunc-method.html:51:1 (cash-derFunc-method.Rd:12): Warning: missing </ul> before </div>
cash-desFunc-method.html:51:1 (cash-desFunc-method.Rd:12): Warning: missing </ul> before </div>
cash-desScores-method.html:51:1 (cash-desScores-method.Rd:12): Warning: missing </ul> before </div>
cash-endpoint-method.html:51:1 (cash-endpoint-method.Rd:12): Warning: missing </ul> before </div>
cash-evaluation-method.html:51:1 (cash-evaluation-method.Rd:12): Warning: missing </ul> before </div>
cash-issue-method.html:51:1 (cash-issue-method.Rd:12): Warning: missing </ul> before </div>
cash-probUnDesirable-method.html:51:1 (cash-probUnDesirable-method.Rd:12): Warning: missing </ul> before </div>
cash-randPar-method.html:51:1 (cash-randPar-method.Rd:12): Warning: missing </ul> before </div>
cash-randSeq-method.html:51:1 (cash-randSeq-method.Rd:12): Warning: missing </ul> before </div>
lambda.html:46:1 (lambda.Rd:10): Warning: missing </ul> before </div>
mti.html:46:1 (mti.Rd:10): Warning: missing </ul> before </div>
mu.html:46:1 (mu.Rd:10): Warning: missing </ul> before </div>
overview.html:278:1 (overview.Rd:144): Warning: missing </ul> before </div>
scale.html:46:1 (scale.Rd:10): Warning: missing </ul> before </div>
seed.html:48:1 (seed.Rd:11): Warning: missing </ul> before </div>
shape.html:46:1 (shape.Rd:10): Warning: missing </ul> before </div>
sigma.html:46:1 (sigma.Rd:10): Warning: missing </ul> before </div>
File ‘randomizr/libs/randomizr.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
NEWS.html:112:1 (NEWS.Rd:64): Warning: <h3> anchor "Changes-in-version-1.1.3.5" already defined
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Saip Ciss <saip.ciss@wanadoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Saip",
                    family = "Ciss",
                    role = c("aut", "cre"),
                    email = "saip.ciss@wanadoo.fr")
as necessary.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##experimental
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Siddharth R <r.siddharthcse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aghila",
                      family = "G",
                      role = "aut"),
               person(given = "Siddharth",
                      family = "R",
                      role = c("aut", "cre"),
                      email = "r.siddharthcse@gmail.com"))
as necessary.
Found the following HTML validation problems:
randtests.aux.html:52:1 (randtests.aux.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Mihai Valcu <valcu@orn.mpg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jay Burns <jay.burns@sruc.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Vasyl Pihur <vpihur@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vasyl",
                      family = "Pihur",
                      role = c("aut", "cre"),
                      email = "vpihur@gmail.com"),
               person(given = "Somnath",
                      family = "Datta",
                      role = "aut",
                      email = "somnath.datta@louisville.edu"),
               person(given = "Susmita",
                      family = "Datta",
                      role = "aut",
                      email = "susmita.datta@louisville.edu"))
as necessary.
Maintainer: ‘Quentin Grimonprez <quentingrim@yahoo.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
show-methods.html:50:1 (show-methods.Rd:13): Warning: missing </ul> before </div>
sub-Rankclust-method.html:56:1 (sub-Rankclust-method.Rd:14): Warning: missing </ul> before </div>
summary-Rankclust-method.html:51:1 (summary-Rankclust-method.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Zhaozhi Qian <qianzhaozhi@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhaozhi",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "qianzhaozhi@connect.hku.hk")
as necessary.
Found the following HTML validation problems:
GenerateExample.html:57:1 (GenerateExample.Rd:14): Warning: missing </ul> before </div>
GenerateExampleTopQ.html:53:1 (GenerateExampleTopQ.Rd:12): Warning: missing </ul> before </div>
ModelSummary.html:47:1 (ModelSummary.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Frank Konietschke <frank.konietschke@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre"),
                      email = "frank.konietschke@charite.de"),
               person(given = "Sarah",
                      family = "Friedrich",
                      role = "aut"),
               person(given = "Edgar",
                      family = "Brunner",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"))
as necessary.
checkRd: (-1) grottaBar.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:83: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Hsiuying Wang <wang@stat.nycu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hsiuying",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wang@stat.nycu.edu.tw"),
               person(given = "Yu-Chun",
                      family = "Lin",
                      role = "aut"),
               person(given = "Wan-Ting",
                      family = "Huang",
                      role = "aut"))
as necessary.
checkRd: (-1) rankL2R.Rd:18: Lost braces; missing escapes or markup?
    18 | where the vector dimension is 2^{response.number}.}
       |                                 ^
Found the following HTML validation problems:
get_parameters.html:47:1 (get_parameters.Rd:10): Warning: missing </ul> before </div>
get_schema_graphviz_dot.html:60:1 (get_schema_graphviz_dot.Rd:20): Warning: missing </ul> before </div>
get_schema_structure.html:56:1 (get_schema_structure.Rd:14): Warning: missing </ul> before </div>
print.rapi_api.html:51:1 (print.rapi_api.Rd:12): Warning: missing </ul> before </div>
print.rapi_operation.html:51:1 (print.rapi_operation.Rd:12): Warning: missing </ul> before </div>
print.rapi_schema_function.html:51:1 (print.rapi_schema_function.Rd:12): Warning: missing </ul> before </div>
print_wrap.html:48:1 (print_wrap.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Running examples in ‘RapidoPGS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rapidopgs_single
> ### Title: Compute PGS from GWAS summary statistics using posteriors from
> ###   Wakefield's approximate Bayes Factors
> ### Aliases: rapidopgs_single
> 
> ### ** Examples
> 
> sumstats <- data.table(SNPID=c("rs139096444","rs3843766","rs61977545", "rs544733737",
+ 		"rs2177641", "rs183491817", "rs72995775","rs78598863", "rs1411315"), 
+ 		CHR=c(4,20,14,2,4,6,6,21,13), 
+ 		BP=c(1479959, 13000913, 29107209, 203573414, 57331393, 11003529, 149256398, 
+ 				25630085, 79166661), 
+ 		REF=c("C","C","C","T","G","C","C","G","T"), 
+ 		ALT=c("A","T","T","A","A","A","T","A","C"), 
+ 		BETA=c(0.012,0.0079,0.0224,0.0033,0.0153,0.058,0.0742,0.001,-0.0131),
+ 		SE=c(0.0099,0.0066,0.0203,0.0171,0.0063,0.0255,0.043,0.0188,0.0074))
> 
> PGS  <- rapidopgs_single(sumstats,  trait = "cc")
Assigning LD blocks...
Loading required namespace: GenomeInfoDb
Failed with error:  ‘there is no package called ‘GenomeInfoDb’’
Error in .requirePackage(package) : 
  unable to load required package ‘GenomeInfoDb’
Calls: rapidopgs_single ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Maintainer: ‘Markus Loecher <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = "Madhav",
                      family = "Kumar",
                      role = "aut",
                      email = "madhavkumar2005@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘evds_table_api.R’ ‘excel_internal.R’ ‘request_funcs.R’
    ‘sp_df_utils.R’
checkRd: (-1) user_log_dir.Rd:48: Lost braces
    48 | \\env{$XDG_CACHE_HOME} if defined
       |      ^
Found the following HTML validation problems:
as.character.rapport.inputs.html:51:1 (as.character.rapport.inputs.Rd:12): Warning: missing </ul> before </div>
as.character.rapport.meta.html:51:1 (as.character.rapport.meta.Rd:12): Warning: missing </ul> before </div>
as.yaml.bool.html:46:1 (as.yaml.bool.Rd:10): Warning: missing </ul> before </div>
check.input.value.html:58:1 (check.input.value.Rd:18): Warning: missing </ul> before </div>
check.input.value.class.html:58:1 (check.input.value.class.Rd:18): Warning: missing </ul> before </div>
check.report.chunks.html:50:1 (check.report.chunks.Rd:12): Warning: missing </ul> before </div>
check.tpl.html:63:1 (check.tpl.Rd:21): Warning: missing </ul> before </div>
guess.input.html:46:1 (guess.input.Rd:10): Warning: missing </ul> before </div>
guess.input.description.html:46:1 (guess.input.description.Rd:10): Warning: missing </ul> before </div>
guess.input.label.html:46:1 (guess.input.label.Rd:10): Warning: missing </ul> before </div>
guess.input.name.html:46:1 (guess.input.name.Rd:10): Warning: missing </ul> before </div>
guess.l.html:63:1 (guess.l.Rd:21): Warning: missing </ul> before </div>
guess.old.input.length.html:50:1 (guess.old.input.length.Rd:12): Warning: missing </ul> before </div>
guess.old.input.type.html:46:1 (guess.old.input.type.Rd:10): Warning: missing </ul> before </div>
print.rapport.info.html:51:1 (print.rapport.info.Rd:12): Warning: missing </ul> before </div>
print.rapport.inputs.html:51:1 (print.rapport.inputs.Rd:12): Warning: missing </ul> before </div>
print.rapport.meta.html:51:1 (print.rapport.meta.Rd:12): Warning: missing </ul> before </div>
rapport.renew.html:50:1 (rapport.renew.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
run_models.html:83:1 (run_models.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Luis Cayuela <luis.cayuela@urjc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Cayuela",
                      role = c("aut", "cre"),
                      email = "luis.cayuela@urjc.es"),
               person(given = c("Nicholas", "J."),
                      family = "Gotelli",
                      role = "aut"))
as necessary.
Maintainer: ‘Boris Leroy <leroy.boris@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Boris",
                    family = "Leroy",
                    role = c("aut", "cre"),
                    email = "leroy.boris@gmail.com")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "Jiali",
                      family = "Mei",
                      role = "aut"),
               person(given = c("authors", "of", "the", "ARPACK", "library.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:311:1 (inst/NEWS.Rd:152): Warning: missing </ul> before </div>
NEWS.html:57:1 (inst/NEWS.Rd:23): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:72:1 (inst/NEWS.Rd:31): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:87:1 (inst/NEWS.Rd:39): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:106:1 (inst/NEWS.Rd:48): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:126:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:146:1 (inst/NEWS.Rd:71): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:169:1 (inst/NEWS.Rd:83): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:189:1 (inst/NEWS.Rd:93): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:207:1 (inst/NEWS.Rd:102): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:218:1 (inst/NEWS.Rd:107): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:239:1 (inst/NEWS.Rd:117): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:250:1 (inst/NEWS.Rd:122): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:265:1 (inst/NEWS.Rd:130): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:280:1 (inst/NEWS.Rd:138): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:296:1 (inst/NEWS.Rd:147): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Johann Gaebler <me@jgaeb.com>’

The Description field contains
  Disparate Impact" Jung et al. (2024) <arXiv:1809.05651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ye Tian <ye.t@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ye",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "ye.t@columbia.edu"),
               person(given = "Yang",
                      family = "Feng",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘findblocks_bc.Rd’ ‘getdata_bc.Rd’ ‘listdata_bc.Rd’ ‘opendata_bc.Rd’
    ‘utils.R’
Maintainer: ‘Joshua O'Brien <joshmobrien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "O'Brien",
                    role = c("aut", "cre"),
                    email = "joshmobrien@gmail.com")
as necessary.
Maintainer: ‘Martin Seilmayer <m.seilmayer@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "m.seilmayer@hzdr.de")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Found the following HTML validation problems:
getData.html:47:1 (getData.Rd:17): Warning: missing </ul> before </div>
projectRaster.html:114:1 (projectRaster.Rd:56): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
helpers.html:148:1 (helpers.Rd:71): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_function.html:46:1 (get_function.Rd:10): Warning: missing </ul> before </div>
get_precision.html:46:1 (get_precision.Rd:10): Warning: missing </ul> before </div>
get_rates.html:46:1 (get_rates.Rd:10): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ratematrix.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
Found the following HTML validation problems:
posterior_interval.optim_fit.html:59:1 (posterior_interval.optim_fit.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
AthenaDriver.html:66:1 (AthenaDriver.Rd:25): Warning: missing </ul> before </div>
sql_translate_env.html:51:1 (sql_translate_env.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Waldemar", "W."),
                      family = "Koczkodaj",
                      role = "aut"),
               person(given = "Feng",
                      family = "Li",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"))
as necessary.
checkRd: (-1) S1.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{m_bar}{the sample vector of moments for a specified vector $(h_{a,r},y)$}
       |                                                                      ^
checkRd: (-1) S1.Rd:16: Lost braces; missing escapes or markup?
    16 | \item{N_k}{index of the $ h_{a,r}$ function considered}
       |                             ^
Found the following HTML validation problems:
inverse.html:54:1 (inverse.Rd:14): Warning: missing </ul> before </div>
which.min2.html:54:1 (which.min2.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yixuan",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "yixuan.qiu@cos.name")
as necessary.
Maintainer: ‘Solveig Pospiech <s.pospiech@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Solveig",
                      family = "Pospiech",
                      role = c("aut", "cre"),
                      email = "s.pospiech@gmx.de"),
               person(given = "Wiebke",
                      family = "Fahlbusch",
                      role = "ctb"))
as necessary.
Maintainer: ‘Graham Williams <Graham.Williams@togaware.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) acquireAuditData.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) rattle.Rd:44: Escaped LaTeX specials: \_
Maintainer: ‘Ozvan Bocher <bocherozvan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ozvan",
                      family = "Bocher",
                      role = c("aut", "cre"),
                      email = "bocherozvan@gmail.com"),
               person(given = "Hervé",
                      family = "Perdry",
                      role = "aut"))
as necessary.
checkRd: (-1) rbm.haplos.power.Rd:35: Lost braces; missing escapes or markup?
    35 |   \item{simus.haplos}{ Which method to simulate the data, if \code{simus.haplos="freqs"}, {rbm.haplos.freqs()} is used, otherwise \code{rbm.haplos.thresholds()} is used.}
       |                                                                                           ^
Maintainer: ‘Davide Massidda <davide.massidda@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giulio",
                      family = "Vidotto",
                      role = "aut",
                      email = "giulio.vidotto@unipd.it"),
               person(given = "Stefano",
                      family = "Noventa",
                      role = "aut",
                      email = "stefano.noventa@uni-tuebingen.de"),
               person(given = "Davide",
                      family = "Massidda",
                      role = c("aut", "cre"),
                      email = "davide.massidda@gmail.com"),
               person(given = "Marco",
                      family = "Vicentini",
                      role = "aut",
                      email = "marco.vicentini@gmail.com"))
as necessary.
Found the following HTML validation problems:
convert_ss_to_polygons.html:45:1 (convert_ss_to_polygons.Rd:10): Warning: missing </ul> before </div>
interpolate_location.html:62:1 (interpolate_location.Rd:18): Warning: missing </ul> before </div>
remove_node_duplicates.html:45:1 (remove_node_duplicates.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
convert_to_native_raster.html:46:1 (convert_to_native_raster.Rd:10): Warning: missing </ul> before </div>
make_vignette_overlay.html:73:1 (make_vignette_overlay.Rd:27): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘render_model.R’
Found the following HTML validation problems:
cross.html:50:1 (cross.Rd:12): Warning: missing </ul> before </div>
unit_vector.html:46:1 (unit_vector.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
drawkeyfunction_lines.html:54:1 (drawkeyfunction_lines.Rd:14): Warning: missing </ul> before </div>
drawkeyfunction_points.html:54:1 (drawkeyfunction_points.Rd:14): Warning: missing </ul> before </div>
generate_soil_textures.html:69:1 (generate_soil_textures.Rd:27): Warning: missing </ul> before </div>
generate_surface.html:51:1 (generate_surface.Rd:13): Warning: missing </ul> before </div>
get_polygon_data_value.html:51:1 (get_polygon_data_value.Rd:15): Warning: missing </ul> before </div>
make_base.html:71:1 (make_base.Rd:29): Warning: missing </ul> before </div>
make_base_triangulated.html:54:1 (make_base_triangulated.Rd:14): Warning: missing </ul> before </div>
make_lines.html:79:1 (make_lines.Rd:31): Warning: missing </ul> before </div>
make_shadow.html:61:1 (make_shadow.Rd:21): Warning: missing </ul> before </div>
make_water.html:69:1 (make_water.Rd:25): Warning: missing </ul> before </div>
make_waterlines.html:79:1 (make_waterlines.Rd:31): Warning: missing </ul> before </div>
render_snapshot_software.html:71:1 (render_snapshot_software.Rd:35): Warning: missing </ul> before </div>
translate_shape_string.html:46:1 (translate_shape_string.Rd:10): Warning: missing </ul> before </div>
write_stl.html:46:1 (write_stl.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Amanda Rehbein <amanda.rehbein@usp.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.ray_shape.html:51:1 (print.ray_shape.Rd:12): Warning: missing </ul> before </div>
print.ray_vertex_data.html:51:1 (print.ray_vertex_data.Rd:12): Warning: missing </ul> before </div>
save_png.html:54:1 (save_png.Rd:14): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BayesianOptimization.Rd: GP_fit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
get_est_vy.html:46:1 (get_est_vy.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Wilson Freitas <wilson.freitas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilson",
                    family = "Freitas",
                    role = c("aut", "cre"),
                    email = "wilson.freitas@gmail.com")
as necessary.
Found the following HTML validation problems:
show-methods.html:56:1 (show-methods.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
AIC.RegressionByComposition.html:56:1 (AIC.RegressionByComposition.Rd:15): Warning: missing </ul> before </div>
coef.RegressionByComposition.html:52:1 (coef.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
fitted.RegressionByComposition.html:52:1 (fitted.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
logLik.RegressionByComposition.html:52:1 (logLik.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
predict.RegressionByComposition.html:56:1 (predict.RegressionByComposition.Rd:15): Warning: missing </ul> before </div>
summary.RegressionByComposition.html:56:1 (summary.RegressionByComposition.Rd:15): Warning: missing </ul> before </div>
vcov.RegressionByComposition.html:52:1 (vcov.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Diego Gallardo <dgallardo@ubiobio.cl>’

The Description field contains
  Gallardo and Saulo <arXiv:2110.04428> The package also provides tools
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Failed with error:  ‘unused argument (quitely = TRUE)’

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
File ‘Rbeast/libs/Rbeast.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
blocks_str.html:56:1 (blocks_str.Rd:16): Warning: missing </ul> before </div>
chunk_blocks.html:69:1 (chunk_blocks.Rd:25): Warning: missing </ul> before </div>
chunk_origin.html:52:1 (chunk_origin.Rd:15): Warning: missing </ul> before </div>
nbt_list_of.html:46:1 (nbt_list_of.Rd:10): Warning: missing </ul> before </div>
rac_cast.html:58:1 (rac_cast.Rd:16): Warning: missing </ul> before </div>
rac_type_full.html:49:1 (rac_type_full.Rd:13): Warning: missing </ul> before </div>
to_rnbt_value.html:50:1 (to_rnbt_value.Rd:12): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Wacek Kusnierczyk <waku@idi.ntnu.no>’
  Authors@R: ‘Wacek Kusnierczyk [aut, cre], Dirk Eddelbuettel [ctb], Berend Hasselman [ctb]’
Found the following HTML validation problems:
dlink-set.html:53:1 (dlink-set.Rd:15): Warning: missing </ul> before </div>
fill.html:51:1 (fill.Rd:12): Warning: missing </ul> before </div>
integrate_density_log.html:72:1 (integrate_density_log.Rd:27): Warning: missing </ul> before </div>
knn.html:70:1 (knn.Rd:22): Warning: missing </ul> before </div>
support.html:46:1 (support.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rmMessWarn.html:47:1 (rmMessWarn.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
documentation_biom.rbiom.html:56:1 (documentation_biom.rbiom.Rd:15): Warning: missing </ul> before </div>
documentation_default.html:458:1 (documentation_default.Rd:277): Warning: missing </ul> before </div>
documentation_dist_test.html:57:1 (documentation_dist_test.Rd:16): Warning: missing </ul> before </div>
documentation_rank.2.html:46:1 (documentation_rank.2.Rd:13): Warning: missing </ul> before </div>
documentation_rank.NULL.html:46:1 (documentation_rank.NULL.Rd:13): Warning: missing </ul> before </div>
documentation_taxa.4.html:44:1 (documentation_taxa.4.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
option_string.html:48:1 (option_string.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Jialun Zhang <reatank@foxmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jialun",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "reatank@foxmail.com"),
               person(given = "Zhilan",
                      family = "Fan",
                      role = "aut"),
               person(given = "Hang",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
write.jkl.html:50:1 (write.jkl.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LoggerAxytrek-class.html:49:1 (LoggerAxytrek-class.Rd:19): Warning: missing </ul> before </div>
LoggerCats-class.html:49:1 (LoggerCats-class.Rd:19): Warning: missing </ul> before </div>
LoggerData-class.html:49:1 (LoggerData-class.Rd:19): Warning: missing </ul> before </div>
LoggerList-class.html:47:1 (LoggerList-class.Rd:17): Warning: missing </ul> before </div>
LoggerLul-class.html:49:1 (LoggerLul-class.Rd:19): Warning: missing </ul> before </div>
LoggerWacu-class.html:49:1 (LoggerWacu-class.Rd:19): Warning: missing </ul> before </div>
Metric-class.html:60:1 (Metric-class.Rd:27): Warning: missing </ul> before </div>
MetricList-class.html:89:1 (MetricList-class.Rd:37): Warning: missing </ul> before </div>
MetricList-class.html:45:1 (MetricList-class.Rd:20): Warning: <h4> anchor "Return-Value" already defined
MetricList-class.html:53:1 (MetricList-class.Rd:23): Warning: <h4> anchor "Return-Value" already defined
MetricList-class.html:67:1 (MetricList-class.Rd:32): Warning: <h4> anchor "Return-Value" already defined
ZoomHistory-class.html:49:1 (ZoomHistory-class.Rd:19): Warning: missing </ul> before </div>
axytrek2h5.html:54:1 (axytrek2h5.Rd:14): Warning: missing </ul> before </div>
cats2h5.html:54:1 (cats2h5.Rd:14): Warning: missing </ul> before </div>
demoaxytrek2h5.html:50:1 (demoaxytrek2h5.Rd:12): Warning: missing </ul> before </div>
democats2h5.html:50:1 (democats2h5.Rd:12): Warning: missing </ul> before </div>
democatsmkbe.html:54:1 (democatsmkbe.Rd:14): Warning: missing </ul> before </div>
demolul2h5.html:50:1 (demolul2h5.Rd:12): Warning: missing </ul> before </div>
demowacu2h5.html:50:1 (demowacu2h5.Rd:12): Warning: missing </ul> before </div>
lul2h5.html:54:1 (lul2h5.Rd:14): Warning: missing </ul> before </div>
wacu2h5.html:63:1 (wacu2h5.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
BM25.html:142:1 (BM25.Rd:163): Warning: <h5> anchor "Usage" already defined
BM25.html:148:1 (BM25.Rd:167): Warning: <h5> anchor "Returns" already defined
BM25.html:155:1 (BM25.Rd:170): Warning: <h5> anchor "Examples" already defined
BM25.html:174:1 (BM25.Rd:184): Warning: <h5> anchor "Usage" already defined
BM25.html:180:1 (BM25.Rd:188): Warning: <h5> anchor "Arguments" already defined
BM25.html:193:1 (BM25.Rd:195): Warning: <h5> anchor "Returns" already defined
BM25.html:200:1 (BM25.Rd:198): Warning: <h5> anchor "Examples" already defined
BM25.html:219:1 (BM25.Rd:212): Warning: <h5> anchor "Usage" already defined
BM25.html:225:1 (BM25.Rd:216): Warning: <h5> anchor "Returns" already defined
BM25.html:232:1 (BM25.Rd:219): Warning: <h5> anchor "Examples" already defined
BM25.html:253:1 (BM25.Rd:235): Warning: <h5> anchor "Usage" already defined
BM25.html:259:1 (BM25.Rd:239): Warning: <h5> anchor "Arguments" already defined
BM25.html:274:1 (BM25.Rd:248): Warning: <h5> anchor "Returns" already defined
BM25.html:281:1 (BM25.Rd:251): Warning: <h5> anchor "Examples" already defined
BM25.html:302:1 (BM25.Rd:267): Warning: <h5> anchor "Usage" already defined
BM25.html:308:1 (BM25.Rd:271): Warning: <h5> anchor "Arguments" already defined
BM25.html:323:1 (BM25.Rd:280): Warning: <h5> anchor "Returns" already defined
BM25.html:330:1 (BM25.Rd:283): Warning: <h5> anchor "Examples" already defined
BM25.html:351:1 (BM25.Rd:299): Warning: <h5> anchor "Usage" already defined
BM25.html:357:1 (BM25.Rd:303): Warning: <h5> anchor "Arguments" already defined
BM25.html:378:1 (BM25.Rd:318): Warning: <h5> anchor "Returns" already defined
BM25.html:385:1 (BM25.Rd:321): Warning: <h5> anchor "Examples" already defined
BM25.html:416:1 (BM25.Rd:347): Warning: <h5> anchor "Usage" already defined
BM25.html:422:1 (BM25.Rd:351): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Abdelmoneim Amer Desouki <desouki@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Abdelmoneim", "Amer"),
                    family = "Desouki",
                    role = c("aut", "cre"),
                    email = "desouki@hhu.de")
as necessary.

The Description field contains
  Desouki, M. Roeder, A. Ngonga (2019) <arXiv:1903.10326>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marco Scutari <scutari@bnlearn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Baptiste",
                      family = "Denis",
                      role = c("aut", "cre")),
               person(given = "Marco",
                      family = "Scutari",
                      role = c("ctb", "cre"),
                      email = "scutari@bnlearn.com"))
as necessary.
Found the following HTML validation problems:
B4.html:41:1 (B4.Rd:8): Warning: missing </ul> before </div>
C12.html:41:1 (C12.Rd:8): Warning: missing </ul> before </div>
C13.html:40:1 (C13.Rd:7): Warning: missing </ul> before </div>
C50.html:41:1 (C50.Rd:7): Warning: missing </ul> before </div>
D9.html:40:1 (D9.Rd:7): Warning: missing </ul> before </div>
M1.html:40:1 (M1.Rd:7): Warning: missing </ul> before </div>
S10.html:42:1 (S10.Rd:8): Warning: missing </ul> before </div>
S33.html:41:1 (S33.Rd:7): Warning: missing </ul> before </div>
S40.html:41:1 (S40.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Luke J. Keele <luke.keele@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luke", "J."),
                    family = "Keele",
                    role = c("aut", "cre"),
                    email = "luke.keele@gmail.com")
as necessary.
Maintainer: ‘Bahadir Yuzbasi <b.yzb@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bahadir",
                      family = "Yuzbasi",
                      role = c("aut", "cre"),
                      email = "b.yzb@hotmail.com"),
               person(given = "Mohammad",
                      family = "Arashi",
                      role = "aut"),
               person(given = "Fikri",
                      family = "Akdeniz",
                      role = "aut"))
as necessary.

The Description field contains
  Yuzbasi et al. (2019) <arXiv:1910.03660>. Special cases of this
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rbridge.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
show-methods.html:53:1 (show-methods.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Serguei Rouzinov <rouzinovs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Serguei",
                      family = "Rouzinov",
                      role = c("aut", "cre"),
                      email = "rouzinovs@gmail.com"),
               person(given = "André",
                      family = "Berchtold",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/xiangzhou09/rbw
which should likely be
  https://github.com/xiangzhou09/rbw/issues
instead.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Baoluo",
                      family = "Sun",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Sun and Tan (2020) <arXiv:2009.09286>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Amir Goldberg <amirgo@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amir",
                      family = "Goldberg",
                      role = c("aut", "cre"),
                      email = "amirgo@stanford.edu"),
               person(given = c("Sarah", "K."),
                      family = "Stein",
                      role = "aut"))
as necessary.
Maintainer: ‘Qiao Liu <liuqiao@stanford.edu>’

The Description field contains
  methods is given in Liu (2022) <arXiv:2212.05925>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Herdiantri Sufriyana <herdi@tmu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rcausim/blob/master/doc/causal_simulation_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
Maintainer: ‘Dr. Fayed Alshammri <fayed333@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fayed",
                      family = "Alshammri",
                      role = "aut"),
               person(given = c("Dr.", "Fayed"),
                      family = "Alshammri",
                      role = "cre",
                      email = "fayed333@hotmail.com"))
as necessary.
Maintainer: ‘Jean Morrison <jeanm@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean",
                    family = "Morrison",
                    role = c("aut", "cre"),
                    email = "jeanm@uchicago.edu")
as necessary.

The Description field contains
  <arXiv:1702.06986>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘temp.RData’
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "geyer@umn.edu"),
               person(given = c("Glen", "D."),
                      family = "Meeden",
                      role = "aut",
                      email = "gmeeden@umn.edu"),
               person(given = c("incorporates", "code", "from", "cddlib", "written", "by", "Komei"),
                      family = "Fukuda",
                      role = "aut",
                      email = "fukuda@ifor.math.ethz.ch",
                      comment = c(ROR = "ver 0.94f")))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get.fingerprint.Rd: fingerprint-class, featvec-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
copy.image.to.clipboard.html:51:1 (copy.image.to.clipboard.Rd:12): Warning: missing </ul> before </div>
do.aromaticity.html:46:1 (do.aromaticity.Rd:10): Warning: missing </ul> before </div>
do.isotopes.html:46:1 (do.isotopes.Rd:10): Warning: missing </ul> before </div>
generate.formula.html:71:1 (generate.formula.Rd:27): Warning: missing </ul> before </div>
generate.formula.iter.html:76:1 (generate.formula.iter.Rd:30): Warning: missing </ul> before </div>
get.depictor.html:98:1 (get.depictor.Rd:42): Warning: missing </ul> before </div>
get.exact.mass.html:46:1 (get.exact.mass.Rd:10): Warning: missing </ul> before </div>
get.formula.html:50:1 (get.formula.Rd:12): Warning: missing </ul> before </div>
get.isotopes.pattern.html:50:1 (get.isotopes.pattern.Rd:12): Warning: missing </ul> before </div>
get.mcs.html:54:1 (get.mcs.Rd:14): Warning: missing </ul> before </div>
get.mol2formula.html:50:1 (get.mol2formula.Rd:12): Warning: missing </ul> before </div>
get.natural.mass.html:46:1 (get.natural.mass.Rd:10): Warning: missing </ul> before </div>
get.total.charge.html:46:1 (get.total.charge.Rd:10): Warning: missing </ul> before </div>
get.total.formal.charge.html:46:1 (get.total.formal.charge.Rd:10): Warning: missing </ul> before </div>
isvalid.formula.html:50:1 (isvalid.formula.Rd:12): Warning: missing </ul> before </div>
matches.html:54:1 (matches.Rd:15): Warning: missing </ul> before </div>
set.charge.formula.html:50:1 (set.charge.formula.Rd:12): Warning: missing </ul> before </div>
view.image.2d.html:50:1 (view.image.2d.Rd:12): Warning: missing </ul> before </div>
view.molecule.2d.html:69:1 (view.molecule.2d.Rd:24): Warning: missing </ul> before </div>
view.table.html:54:1 (view.table.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cdo_execute.html:88:1 (cdo_execute.Rd:41): Warning: missing </ul> before </div>
cdo_set_output.html:50:1 (cdo_set_output.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
Maintainer: ‘Bruno Melo <ctbrunomelo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bruno", "M.", "S.", "S."),
                      family = "Melo",
                      role = "aut"),
               person(given = "Bruno",
                      family = "Melo",
                      role = "cre",
                      email = "ctbrunomelo@gmail.com"))
as necessary.
checkRd: (-1) nc_open_CGLS.Rd:29-32: Lost braces
    29 | if(resolution == "300m"){
       |                         ^
checkRd: (-1) nc_open_CGLS.Rd:33-36: Lost braces
    33 | if(resolution == "1km"){
       |                        ^
Found the following HTML validation problems:
countdown.html:50:1 (countdown.Rd:12): Warning: missing </ul> before </div>
html_img.html:50:1 (html_img.Rd:12): Warning: missing </ul> before </div>
last_update.html:50:1 (last_update.Rd:12): Warning: missing </ul> before </div>
str_rank.html:60:1 (str_rank.Rd:20): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:212:1 (inst/NEWS.Rd:90): Warning: missing </ul> before </div>
NEWS.html:43:1 (inst/NEWS.Rd:15): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:73:1 (inst/NEWS.Rd:28): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:88:1 (inst/NEWS.Rd:36): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:112:1 (inst/NEWS.Rd:47): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:127:1 (inst/NEWS.Rd:55): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:153:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:180:1 (inst/NEWS.Rd:80): Warning: <h4> anchor "NEW-FEATURES" already defined
checkRd: (-1) Rchoice.Rd:159: Lost braces; missing escapes or markup?
   159 |  \code{ranp}. If the parameters are assumed to be normally distributed \eqn{\beta_i ~ N(\beta, \Sigma)}, then the random parameter are constructed as: \deqn{\beta_{ir}=\beta+L\omega_{ir}} where \eqn{LL'=\Sigma} and \eqn{\omega_{ir}} is the {r}-th draw from standard normal distribution for individual \eqn{i}. 
       |                                                                                                                                                                                                                                                 ^
Found the following HTML validation problems:
rFormula.html:77:1 (rFormula.Rd:29): Warning: missing </ul> before </div>
Maintainer: ‘Anne Philippe <anne.philippe@univ-nantes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne",
                      family = "Philippe",
                      role = c("aut", "cre"),
                      email = "anne.philippe@univ-nantes.fr"),
               person(given = "Marie-Anne",
                      family = "Vibet",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘data.csv’
Maintainer: ‘Hongen Zhang <hzhang.henry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hongen",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang.henry@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
sql_variant.html:50:1 (sql_variant.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Sebastien Bihorel <sb.pmlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Bihorel",
                    role = c("aut", "cre"),
                    email = "sb.pmlab@gmail.com")
as necessary.
Maintainer: ‘Wolfgang Konen <wolfgang.konen@fh-koeln.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Konen",
                      role = c("aut", "cre"),
                      email = "wolfgang.konen@fh-koeln.de"),
               person(given = "Nikolaus",
                      family = "Hansen",
                      role = "aut",
                      email = "hansen.AT.lri.fr"))
as necessary.
Found the following files/directories:
  ‘outcmaesdisp.dat’
Found the following HTML validation problems:
myrep.html:51:1 (myrep.Rd:13): Warning: missing </ul> before </div>
print.rcmdcheck.html:66:1 (print.rcmdcheck.Rd:23): Warning: missing </ul> before </div>
print.rcmdcheck_comparison.html:57:1 (print.rcmdcheck_comparison.Rd:16): Warning: missing </ul> before </div>
xopen.rcmdcheck.html:61:1 (xopen.rcmdcheck.Rd:18): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  RcmdrPlugin.cpd.Rd: cpd, Rcmdr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Aurora Torrente <etorrent@est-econ.uc3m.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Lopez-Pintado",
                      role = "aut",
                      email = "sl2929@columbia.edu"),
               person(given = "Aurora",
                      family = "Torrente.",
                      role = "aut",
                      email = "etorrent@est-econ.uc3m.es"),
               person(given = "Aurora",
                      family = "Torrente",
                      role = "cre",
                      email = "etorrent@est-econ.uc3m.es"))
as necessary.
Maintainer: ‘David Leiva <dleivaur@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maribel",
                      family = "Pero",
                      role = "aut",
                      email = "mpero@ub.edu"),
               person(given = "David",
                      family = "Leiva",
                      role = c("aut", "cre"),
                      email = "dleivaur@ub.edu"),
               person(given = "Joan",
                      family = "Guardia",
                      role = "aut",
                      email = "jguardia@ub.edu"),
               person(given = "Antonio",
                      family = "Solanas",
                      role = "aut",
                      email = "antonio.solanas@ub.edu"))
as necessary.
Maintainer: ‘Daniel-Corneliu Leucuta <danny.ldc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel-Corneliu",
                    family = "Leucuta",
                    role = c("aut", "cre"),
                    email = "danny.ldc@gmail.com")
as necessary.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Maintainer: ‘Yoshinobu Kanda <ycanda-tky@umin.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yoshinobu",
                    family = "Kanda",
                    role = c("aut", "cre"),
                    email = "ycanda-tky@umin.ac.jp")
as necessary.
Maintainer: ‘Francois Husson <francois.husson@institut-agro.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Husson",
                      role = c("aut", "cre"),
                      email = "francois.husson@institut-agro.fr"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Le",
                      role = "aut"))
as necessary.
Maintainer: ‘Richard M. Heiberger <rmh@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Richard", "M."),
                      family = "Heiberger",
                      role = c("aut", "cre"),
                      email = "rmh@temple.edu"),
               person(given = c("with", "contributions", "from", "Burt"),
                      family = "Holland",
                      role = "aut"))
as necessary.
Maintainer: ‘A. C. Del Re <acdelre@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "C.", "Del"),
                    family = "Re",
                    role = c("aut", "cre"),
                    email = "acdelre@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) RcmdrPlugin.MA-package.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) RcmdrPlugin.MA-package.Rd:23: Escaped LaTeX specials: \&
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrew",
                      family = "Heiss",
                      role = c("aut", "cre"),
                      email = "andrew@andrewheiss.com"),
               person(given = "Richard",
                      family = "Payne",
                      role = "aut"),
               person(given = "Christa",
                      family = "Schank",
                      role = "aut"),
               person(given = "Jessica",
                      family = "Reese",
                      role = "aut"))
as necessary.
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Maintainer: ‘Achmad Fauzi Bagus F <fauzi.pandya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Monalisa", "Sipahutar,Setia"),
                      family = "Pramana",
                      role = "aut",
                      email = "11.6790@stis.ac.id"),
               person(given = "Achmad",
                      family = "Fauzi",
                      role = c("aut", "cre"),
                      email = "fauzi.pandya@gmail.com"))
as necessary.
Maintainer: ‘Arto Luoma <arto.luoma@wippies.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arto",
                    family = "Luoma",
                    role = c("aut", "cre"),
                    email = "arto.luoma@wippies.com")
as necessary.
Maintainer: ‘Marcelo Goulart Correia <mgoulart.inc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcelo", "Goulart"),
                    family = "Correia",
                    role = c("aut", "cre"),
                    email = "mgoulart.inc@gmail.com")
as necessary.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
Found the following HTML validation problems:
Utilities.html:74:1 (Utilities.Rd:40): Warning: missing </ul> before </div>
checkRd: (-1) nonlinearAR1.sim.Rd:8: Lost braces; missing escapes or markup?
     8 | of the form z_n = g(z_{n-1}) + epsilon. A normal distribution is assumed for the innovations.
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘Erich Neuwirth <erich.neuwirth@univie.ac.at>’

The Description field contains
  Cynthia Brewer as described at http://colorbrewer2.org.
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
conesa_cols.html:46:1 (conesa_cols.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
nagelkerkeHermite.html:48:1 (nagelkerkeHermite.Rd:10): Warning: missing </ul> before </div>
pairwiseDifferences.html:48:1 (pairwiseDifferences.Rd:10): Warning: missing </ul> before </div>
pairwiseOrdinalMatrix.html:47:1 (pairwiseOrdinalMatrix.Rd:10): Warning: missing </ul> before </div>
pairwiseOrdinalPairedMatrix.html:49:1 (pairwiseOrdinalPairedMatrix.Rd:11): Warning: missing </ul> before </div>
pairwiseOrdinalPairedTest.html:47:1 (pairwiseOrdinalPairedTest.Rd:10): Warning: missing </ul> before </div>
pairwiseOrdinalTest.html:47:1 (pairwiseOrdinalTest.Rd:10): Warning: missing </ul> before </div>
pairwiseRobustMatrix.html:47:1 (pairwiseRobustMatrix.Rd:10): Warning: missing </ul> before </div>
pairwiseRobustTest.html:46:1 (pairwiseRobustTest.Rd:10): Warning: missing </ul> before </div>
pairwiseSignMatrix.html:46:1 (pairwiseSignMatrix.Rd:10): Warning: missing </ul> before </div>
pairwiseSignTest.html:46:1 (pairwiseSignTest.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
option.rcontroll.html:47:1 (option.rcontroll.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
optimize_files.html:69:1 (optimize_files.Rd:23): Warning: missing </ul> before </div>
optimize_folder.html:81:1 (optimize_folder.Rd:31): Warning: missing </ul> before </div>
optimize_text.html:56:1 (optimize_text.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Joseph Wood <jwood000@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://github.com/jwood000/RcppAlgos/issues/9#issue-467908452Issue%20#9
    From: NEWS.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Found the following HTML validation problems:
armadillo_throttle_cores.html:50:1 (armadillo_throttle_cores.Rd:13): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RcppCensSpatial.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"),
               person(given = c("based", "on", "code", "written", "during"),
                      family = "2005",
                      role = "aut"),
               person(given = c("2006", "by", "Dominick"),
                      family = "Samperi",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"),
               person(given = c("with", "contributions", "by", "David"),
                      family = "Reiss",
                      role = "aut"),
               person(given = c("and", "based", "on", "code", "written", "during"),
                      family = "2005",
                      role = "aut"),
               person(given = c("2006", "by", "Dominick"),
                      family = "Samperi",
                      role = "aut"))
as necessary.
Maintainer: ‘Zach DeBruine <zacharydebruine@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zach",
                    family = "DeBruine",
                    role = c("aut", "cre"),
                    email = "zacharydebruine@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
'library' or 'require' call not declared from: ‘rbenchmark’
Found the following HTML validation problems:
checks.html:120:1 (checks.Rd:70): Warning: missing </ul> before </div>
cl_functions.html:86:1 (cl_functions.Rd:38): Warning: missing </ul> before </div>
get_pkg_registry.html:46:1 (get_pkg_registry.Rd:10): Warning: missing </ul> before </div>
subcorpus_get_ranges.html:47:1 (subcorpus_get_ranges.Rd:11): Warning: missing </ul> before </div>
tmp_registry.html:49:1 (tmp_registry.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"))
as necessary.
Maintainer: ‘Shusei Eshima <shuseieshima@gmail.com>’

The Description field contains
  (2023) <arXiv:2305.19045>. Jagger uses patterns derived from
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:206:1 (inst/NEWS.Rd:96): Warning: missing </ul> before </div>
NEWS.html:51:1 (inst/NEWS.Rd:18): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:66:1 (inst/NEWS.Rd:26): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:83:1 (inst/NEWS.Rd:36): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:102:1 (inst/NEWS.Rd:46): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:120:1 (inst/NEWS.Rd:55): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:135:1 (inst/NEWS.Rd:63): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:149:1 (inst/NEWS.Rd:69): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:169:1 (inst/NEWS.Rd:80): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:184:1 (inst/NEWS.Rd:88): Warning: <h4> anchor "NEW-FEATURES" already defined
Found the following HTML validation problems:
tbbLibraryPath.html:50:1 (tbbLibraryPath.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Karl Forner <karl.forner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Forner",
                    role = c("aut", "cre"),
                    email = "karl.forner@gmail.com")
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dirk", "Eddelbuettel;", "the"),
                      family = "authors",
                      role = "aut"),
               person(given = c("contributors", "of"),
                      family = "QuantLib",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "cre",
                      email = "edd@debian.org"))
as necessary.
Found the following HTML validation problems:
Rcpp-internal.html:61:1 (Rcpp-internal.Rd:18): Warning: missing </ul> before </div>
populate.html:52:1 (populate.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Kevin Ushey <kevinushey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Ushey",
                    role = c("aut", "cre"),
                    email = "kevinushey@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘print.rcpptimer.R’
Found the following HTML validation problems:
print.rcpptimer.html:60:1 (print.rcpptimer.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Jonathan Olmsted <jpolmsted@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rtn.Rd’:
    http://dx.doi.org/10.1007/BF00143942
Maintainer: ‘Marc A. Suchard <msuchard@ucla.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Found the following HTML validation problems:
extract_txt_char.html:54:1 (extract_txt_char.Rd:14): Warning: missing </ul> before </div>
extract_txt_cons.html:54:1 (extract_txt_cons.Rd:14): Warning: missing </ul> before </div>
extract_txt_death.html:54:1 (extract_txt_death.Rd:14): Warning: missing </ul> before </div>
extract_txt_drug.html:54:1 (extract_txt_drug.Rd:14): Warning: missing </ul> before </div>
extract_txt_hes_primary.html:54:1 (extract_txt_hes_primary.Rd:14): Warning: missing </ul> before </div>
extract_txt_linkage.html:50:1 (extract_txt_linkage.Rd:12): Warning: missing </ul> before </div>
extract_txt_obs.html:54:1 (extract_txt_obs.Rd:14): Warning: missing </ul> before </div>
extract_txt_pat.html:54:1 (extract_txt_pat.Rd:14): Warning: missing </ul> before </div>
extract_txt_prac.html:54:1 (extract_txt_prac.Rd:14): Warning: missing </ul> before </div>
extract_txt_prob.html:54:1 (extract_txt_prob.Rd:14): Warning: missing </ul> before </div>
extract_txt_ref.html:54:1 (extract_txt_ref.Rd:14): Warning: missing </ul> before </div>
implement_output.html:74:1 (implement_output.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Jamie Spaulding <jspaulding02@hamline.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jamie",
                      family = "Spaulding",
                      role = c("aut", "cre"),
                      email = "jspaulding02@hamline.edu"),
               person(given = "Keith",
                      family = "Morris",
                      role = "aut"))
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Maintainer: ‘J.S. Pierre <jean-sebastien.pierre@univ-rennes1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Sebastien",
                      family = "PIERRE",
                      role = c("aut", "cre")),
               person(given = "J.S.",
                      family = "Pierre",
                      role = "cre",
                      email = "jean-sebastien.pierre@univ-rennes1.fr"))
as necessary.
Found the following HTML validation problems:
GET_agency_id.html:46:1 (GET_agency_id.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Colin Millar <colin.millar@ices.dk>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rct3-package.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
  File ‘rct3.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
Maintainer: ‘Isidoro Garcia-Urquieta <isidoro.gu@gmail.com>’

The Description field contains
  <arXiv:1607.00698>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Fusion.html:100:1 (Fusion.Rd:94): Warning: <h5> anchor "Usage" already defined
Fusion.html:114:1 (Fusion.Rd:103): Warning: <h5> anchor "Usage" already defined
Fusion.html:128:1 (Fusion.Rd:112): Warning: <h5> anchor "Usage" already defined
Fusion.html:144:1 (Fusion.Rd:122): Warning: <h5> anchor "Usage" already defined
Fusion.html:150:1 (Fusion.Rd:126): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Wojciech Rosa <w.rosa@pollub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wojciech",
                    family = "Rosa",
                    role = c("aut", "cre"),
                    email = "w.rosa@pollub.pl")
as necessary.
Found the following HTML validation problems:
dot-downloader.html:46:1 (dot-downloader.Rd:10): Warning: missing </ul> before </div>
dot-ok_to_proceed.html:46:1 (dot-ok_to_proceed.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_markdown.html:50:1 (as_markdown.Rd:12): Warning: missing </ul> before </div>
md_document.html:65:1 (md_document.Rd:23): Warning: missing </ul> before </div>
output_format.html:60:1 (output_format.Rd:18): Warning: missing </ul> before </div>
read_rdfile.html:50:1 (read_rdfile.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
creatbin.html:50:1 (creatbin.Rd:12): Warning: missing </ul> before </div>
genList.html:50:1 (genList.Rd:12): Warning: missing </ul> before </div>
odd.html:46:1 (odd.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.CJMrdbwdensity.html:47:1 (print.CJMrdbwdensity.Rd:10): Warning: missing </ul> before </div>
print.CJMrddensity.html:47:1 (print.CJMrddensity.Rd:10): Warning: missing </ul> before </div>
summary.CJMrdbwdensity.html:47:1 (summary.CJMrdbwdensity.Rd:10): Warning: missing </ul> before </div>
summary.CJMrddensity.html:47:1 (summary.CJMrddensity.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Chi Seng Pun <cspun@ntu.edu.sg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chi", "Seng"),
                      family = "Pun",
                      role = c("aut", "cre"),
                      email = "cspun@ntu.edu.sg"),
               person(given = c("Matthew", "Zakharia"),
                      family = "Hadimaja",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
c.rdf.html:51:1 (c.rdf.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
client_cache_date.html:47:1 (client_cache_date.Rd:11): Warning: missing </ul> before </div>
collapse_api_responses.html:46:1 (collapse_api_responses.Rd:10): Warning: missing </ul> before </div>
download_datasets.html:97:1 (download_datasets.Rd:42): Warning: missing </ul> before </div>
last_api_update.html:46:1 (last_api_update.Rd:10): Warning: missing </ul> before </div>
rbind_list_base.html:46:1 (rbind_list_base.Rd:10): Warning: missing </ul> before </div>
read_dhs_dataset.html:66:1 (read_dhs_dataset.Rd:22): Warning: missing </ul> before </div>
response_is_json.html:46:1 (response_is_json.Rd:10): Warning: missing </ul> before </div>
response_to_json.html:46:1 (response_to_json.Rd:10): Warning: missing </ul> before </div>
unzip_special.html:88:1 (unzip_special.Rd:40): Warning: missing </ul> before </div>
update_rdhs_config.html:118:1 (update_rdhs_config.Rd:58): Warning: missing </ul> before </div>
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

The Description field contains
  A client library for 'The Guardian' (https://www.guardian.com/) and
Please enclose URLs in angle brackets (<...>).

The BugReports field in DESCRIPTION has
  https://github.com/ironholds/rdian
which should likely be
  https://github.com/ironholds/rdian/issues
instead.
Maintainer: ‘Gennaro Tedesco: <gennarotedesco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gennaro",
                    family = "Tedesco",
                    role = c("aut", "cre"),
                    email = "gennarotedesco@gmail.com")
as necessary.
Maintainer: ‘Christopher Bolen <cbolen1@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) farthest_point_sampling.Rd:28: Lost braces; missing escapes or markup?
    28 | space P = {p_1, ..., p_k}, such that each p_i is the farthest 
       |           ^
Maintainer: ‘Richard Reeve <richard.reeve@glasgow.ac.uk>’

The Description field contains
  <arXiv:1404.6520v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Ops.binary.html:51:1 (Ops.binary.Rd:12): Warning: missing </ul> before </div>
loadAttributes.html:50:1 (loadAttributes.Rd:12): Warning: missing </ul> before </div>
phy_abundance.html:55:1 (phy_abundance.Rd:17): Warning: missing </ul> before </div>
saveAttributes.html:46:1 (saveAttributes.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Christopher Strothmann <rdmpackage@gmail.com>’

The Description field contains
  presented in Strothmann et al. (2022) <arXiv:2201.03329> and Strothmann
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) computeCBMeasure.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Christian Graul <christian.graul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Graul",
                    role = c("aut", "cre"),
                    email = "christian.graul@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hasan BULUT <hasan.bulut@omu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hasan",
                    family = "BULUT",
                    role = c("aut", "cre"),
                    email = "hasan.bulut@omu.edu.tr")
as necessary.
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
insert_ref.html:256:1 (insert_ref.Rd:196): Warning: <h4> anchor "Rd-macro-insertNoCite" already defined
set_Rdpack_bibstyle.html:45:1 (set_Rdpack_bibstyle.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhirui",
                      family = "Hu",
                      role = "aut"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"))
as necessary.

The Description field contains
  Also see Hu and Tak (2020) <arXiv:2005.08049>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
doi2handle-defunct.html:48:1 (doi2handle-defunct.Rd:13): Warning: missing </ul> before </div>
dryad_fetch-defunct.html:46:1 (dryad_fetch-defunct.Rd:10): Warning: missing </ul> before </div>
dryad_metadata-defunct.html:46:1 (dryad_metadata-defunct.Rd:10): Warning: missing </ul> before </div>
dryad_package_dois-defunct.html:46:1 (dryad_package_dois-defunct.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dsdp-readsdpa.html:52:1 (dsdp-readsdpa.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helpers-process-tracing.R’ ‘process_tracing_estimator.Rd’
Maintainer: ‘Aaron J. Baraff <ajbaraff@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aaron", "J."),
                    family = "Baraff",
                    role = c("aut", "cre"),
                    email = "ajbaraff@uw.edu")
as necessary.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Kisung",
                      family = "You",
                      role = "aut"),
               person(given = c("Sujit", "K."),
                      family = "Ghosh",
                      role = "aut"),
               person(given = "Bingyue",
                      family = "Su",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Suh",
                      role = "aut"),
               person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"))
as necessary.
Found the following HTML validation problems:
as.tags.reactable.html:56:1 (as.tags.reactable.Rd:15): Warning: missing </ul> before </div>
knit_print.reactable.html:50:1 (knit_print.reactable.Rd:12): Warning: missing </ul> before </div>
widget_html.reactable.html:58:1 (widget_html.reactable.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
reactlog_write.html:58:1 (reactlog_write.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_lfs_grossflows.html:48:1 (check_lfs_grossflows.Rd:11): Warning: missing </ul> before </div>
extract_abs_sheets.html:63:1 (extract_abs_sheets.Rd:21): Warning: missing </ul> before </div>
fast_str_squish.html:46:1 (fast_str_squish.Rd:10): Warning: missing </ul> before </div>
tidy_abs_list.html:53:1 (tidy_abs_list.Rd:15): Warning: missing </ul> before </div>
tidy_awe.html:46:1 (tidy_awe.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhadip",
                    family = "Datta",
                    role = c("aut", "cre"),
                    email = "subhadipdatta007@gmail.com")
as necessary.
Maintainer: ‘Nicholas Cooper <njcooper@gmx.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Cooper",
                    role = c("aut", "cre"),
                    email = "njcooper@gmx.co.uk")
as necessary.
checkRd: (-1) reader-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:55: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘temp.txt’ ‘temp2.csv’ ‘temp3.rda’
Found the following HTML validation problems:
print.html:60:1 (print.Rd:21): Warning: missing </ul> before </div>
unzip_single_gt3x.html:82:1 (unzip_single_gt3x.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasper",
                    family = "Kristensen",
                    role = c("aut", "cre"),
                    email = "kaskr@dtu.dk")
as necessary.
Maintainer: ‘Clemens Druee <druee@uni-trier.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Clemens",
                      family = "Druee",
                      role = c("aut", "cre"),
                      email = "druee@uni-trier.de"),
               person(given = "Universitaet",
                      family = "Trier",
                      role = "aut"))
as necessary.
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
Maintainer: ‘Mark Ewing <b.mark@ewingsonline.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Ewing",
                    role = c("aut", "cre"),
                    email = "b.mark@ewingsonline.com")
as necessary.
Found the following HTML validation problems:
read_excel_noguess.html:52:1 (read_excel_noguess.Rd:13): Warning: missing </ul> before </div>
tables_from_seriesid.html:46:1 (tables_from_seriesid.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) ReAD.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
checkRd: (-1) em_hmm.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  melt_delim.Rd: tibble
  read_delim.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘readr/libs/readr.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
    ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
saveToExport.html:47:1 (saveToExport.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_docid.html:54:1 (add_docid.Rd:14): Warning: missing </ul> before </div>
as.character.readtext.html:52:1 (as.character.readtext.Rd:12): Warning: missing </ul> before </div>
cache_remote.html:77:1 (cache_remote.Rd:25): Warning: missing </ul> before </div>
get_temp.html:61:1 (get_temp.Rd:19): Warning: missing </ul> before </div>
impute_types.html:47:1 (impute_types.Rd:10): Warning: missing </ul> before </div>
print.readtext.html:59:1 (print.readtext.Rd:16): Warning: missing </ul> before </div>
sort_fields.html:58:1 (sort_fields.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
REML_Rm.html:153:1 (REML_Rm.Rd:68): Warning: missing </ul> before </div>
R_mstep2.html:141:1 (R_mstep2.Rd:62): Warning: missing </ul> before </div>
print.html:57:1 (print.Rd:20): Warning: missing </ul> before </div>
vp_cp.html:62:1 (vp_cp.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wesley",
                      family = "Graybill",
                      role = "aut"),
               person(given = "Mingli",
                      family = "Chen",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"),
               person(given = "Alfred",
                      family = "Galichon",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Wieland <thomas.wieland.geo@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.geo@googlemail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Automotive.Rd:29: Lost braces
    29 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). Own postprocessing.
       |                                                           ^
checkRd: (-1) Automotive.Rd:33: Lost braces
    33 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). 
       |                                                           ^
'library' or 'require' call not declared from: ‘deconvolveR’
Found the following HTML validation problems:
ThreshFDR.html:56:1 (ThreshFDR.Rd:14): Warning: missing </ul> before </div>
plot.medde.html:51:1 (plot.medde.Rd:12): Warning: missing </ul> before </div>
qmedde.html:51:1 (qmedde.Rd:12): Warning: missing </ul> before </div>
rmedde.html:54:1 (rmedde.Rd:14): Warning: missing </ul> before </div>
'library' or 'require' calls not declared from:
  ‘FNN’ ‘MASS’ ‘e1071’ ‘flexmix’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DateTime.Rd: ClassGroups
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_CD_local.R’ ‘gg_PIT_local.R’
Maintainer: ‘Louis Raimbault <Louis.Raimbault@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Louis",
                      family = "Raimbault",
                      role = c("aut", "cre"),
                      email = "louis.raimbault@icloud.com"),
               person(family = "A.Mokkadem",
                      role = "aut"),
               person(family = "M.Pelletier",
                      role = "aut"))
as necessary.

The Description field contains
  Raimbault (2020) <arXiv:2011.14195>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/LouisRaimbault/RecAssoRules-R
which should likely be
  https://github.com/LouisRaimbault/RecAssoRules-R/issues
instead.
Found the following HTML validation problems:
compute_vertical_inflow.html:52:1 (compute_vertical_inflow.Rd:13): Warning: missing </ul> before </div>
compute_vertical_inflow_cell.html:50:1 (compute_vertical_inflow_cell.Rd:12): Warning: missing </ul> before </div>
compute_water_budget.html:58:1 (compute_water_budget.Rd:16): Warning: missing </ul> before </div>
compute_water_budget_cell.html:50:1 (compute_water_budget_cell.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
Found the following HTML validation problems:
fixed.html:85:1 (fixed.Rd:48): Warning: missing </ul> before </div>
selections.html:213:1 (selections.Rd:167): Warning: missing </ul> before </div>
Maintainer: ‘Leonardo Dapporto <leondap@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leonardo",
                      family = "Dapporto",
                      role = c("aut", "cre"),
                      email = "leondap@gmail.com"),
               person(given = "Matteo",
                      family = "Ramazzotti",
                      role = "aut"),
               person(given = "Simone",
                      family = "Fattorini",
                      role = "aut"),
               person(given = "Roger",
                      family = "Vila",
                      role = "aut"),
               person(given = "Gerard",
                      family = "Talavera",
                      role = "aut"),
               person(given = c("Roger", "H.L."),
                      family = "Dennis",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
is.recmap.html:46:1 (is.recmap.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
example_der_fun.html:50:1 (example_der_fun.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) recombinator.Rd:32-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) recombinator.Rd:35-38: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Os",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Found the following HTML validation problems:
getMinimalTrain.html:94:1 (getMinimalTrain.Rd:69): Warning: <h3> anchor "_sec_note" already defined
resample.html:57:1 (resample.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Magdalena Chrapek <Magdalena.Chrapek@ujk.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Magdalena",
                    family = "Chrapek",
                    role = c("aut", "cre"),
                    email = "magdalena.chrapek@ujk.edu.pl")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:375:1 (inst/NEWS.Rd:155): Warning: missing </ul> before </div>
NEWS.html:71:1 (inst/NEWS.Rd:28): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:86:1 (inst/NEWS.Rd:36): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:100:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:117:1 (inst/NEWS.Rd:49): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:132:1 (inst/NEWS.Rd:57): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:149:1 (inst/NEWS.Rd:64): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:170:1 (inst/NEWS.Rd:74): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:202:1 (inst/NEWS.Rd:86): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:255:1 (inst/NEWS.Rd:106): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:273:1 (inst/NEWS.Rd:115): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:302:1 (inst/NEWS.Rd:126): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:343:1 (inst/NEWS.Rd:142): Warning: <h4> anchor "BUG-FIXES" already defined
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "David",
                      family = "Cortes",
                      role = "aut"),
               person(given = "Chih-Jen",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yu-Chin",
                      family = "Juan",
                      role = "aut"),
               person(given = "Wei-Sheng",
                      family = "Chin",
                      role = "aut"),
               person(given = "Yong",
                      family = "Zhuang",
                      role = "aut"),
               person(given = "Bo-Wen",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Meng-Yuan",
                      family = "Yang",
                      role = "aut"),
               person(given = c("other", "contributors.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
checkRd: (-1) pseudo.geefit.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.geefit.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
dot-calculateCrossingPercentageCmplx.html:59:1 (dot-calculateCrossingPercentageCmplx.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_type.html:50:1 (as_type.Rd:12): Warning: missing </ul> before </div>
check_types.html:46:1 (check_types.Rd:10): Warning: missing </ul> before </div>
correct_constraints.html:46:1 (correct_constraints.Rd:10): Warning: missing </ul> before </div>
modelToVn.html:65:1 (modelToVn.Rd:23): Warning: missing </ul> before </div>
norm_type_ref.html:55:1 (norm_type_ref.Rd:15): Warning: missing </ul> before </div>
recover_RelDataModel.html:49:1 (recover_RelDataModel.Rd:13): Warning: missing </ul> before </div>
sub-.RelDataModel.html:61:1 (sub-.RelDataModel.Rd:18): Warning: missing </ul> before </div>
view_confrontation_report.html:51:1 (view_confrontation_report.Rd:13): Warning: missing </ul> before </div>
write_json_data_model.html:50:1 (write_json_data_model.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
show-method.html:72:1 (show-method.Rd:36): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Extraction.html:58:1 (Extraction.Rd:18): Warning: missing </ul> before </div>
as.character.response.html:52:1 (as.character.response.Rd:13): Warning: missing </ul> before </div>
checkbox_suffixes.html:53:1 (checkbox_suffixes.Rd:12): Warning: missing </ul> before </div>
exportDataQuality.html:59:1 (exportDataQuality.Rd:17): Warning: missing </ul> before </div>
fileRepositoryPath.html:59:1 (fileRepositoryPath.Rd:19): Warning: missing </ul> before </div>
writeDataForImport.html:47:1 (writeDataForImport.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
checkbox_names.html:58:1 (checkbox_names.Rd:16): Warning: missing </ul> before </div>
fill_data.html:54:1 (fill_data.Rd:14): Warning: missing </ul> before </div>
recalculate.html:60:1 (recalculate.Rd:16): Warning: missing </ul> before </div>
split_event.html:58:1 (split_event.Rd:16): Warning: missing </ul> before </div>
split_form.html:62:1 (split_form.Rd:18): Warning: missing </ul> before </div>
to_factor.html:54:1 (to_factor.Rd:14): Warning: missing </ul> before </div>
transform_checkboxes.html:60:1 (transform_checkboxes.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_labelled_xlsx_features.html:82:1 (add_labelled_xlsx_features.Rd:34): Warning: missing </ul> before </div>
bind_supertbl_metadata.html:47:1 (bind_supertbl_metadata.Rd:10): Warning: missing </ul> before </div>
check_equal_col_summaries.html:55:1 (check_equal_col_summaries.Rd:14): Warning: missing </ul> before </div>
check_extra_field_values.html:50:1 (check_extra_field_values.Rd:12): Warning: missing </ul> before </div>
check_field_is_logical.html:46:1 (check_field_is_logical.Rd:10): Warning: missing </ul> before </div>
check_fields_are_checkboxes.html:50:1 (check_fields_are_checkboxes.Rd:12): Warning: missing </ul> before </div>
check_fields_exist.html:54:1 (check_fields_exist.Rd:14): Warning: missing </ul> before </div>
check_metadata_fields_exist.html:57:1 (check_metadata_fields_exist.Rd:15): Warning: missing </ul> before </div>
parse_logical_cols.html:54:1 (parse_logical_cols.Rd:14): Warning: missing </ul> before </div>
supertbl_recode.html:55:1 (supertbl_recode.Rd:14): Warning: missing </ul> before </div>
update_dag_cols.html:63:1 (update_dag_cols.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘redSolve.R’
Maintainer: ‘Ivan Rivera <ivan.s.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Rivera",
                    role = c("aut", "cre"),
                    email = "ivan.s.rivera@gmail.com")
as necessary.
Maintainer: ‘Siddhartha Kundu <siddhartha_kundu@aiims.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siddhartha",
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "2021:ManuscriptUnderPreparation")
as necessary.
Maintainer: ‘Juan A. Ferrer-Bonsoms <jafhernandez@tecnun.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "A."),
                      family = "Ferrer-Bonsoms",
                      role = c("aut", "cre"),
                      email = "jafhernandez@tecnun.es"),
               person(given = "Laura",
                      family = "Jareno",
                      role = "aut"),
               person(given = "Angel",
                      family = "Rubio",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot.redist_plans.html:59:1 (plot.redist_plans.Rd:16): Warning: missing </ul> before </div>
File ‘redland/libs/redland.so’:
  Found non-API call to R: ‘SET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
freeQueryResults.html:50:1 (freeQueryResults.Rd:13): Warning: missing </ul> before </div>
length-SWIGArray-method.html:47:1 (length-SWIGArray-method.Rd:9): Warning: missing </ul> before </div>
roclet_output.roclet_mergeNamespace.html:61:1 (roclet_output.roclet_mergeNamespace.Rd:16): Warning: missing </ul> before </div>
setNameSpace.html:61:1 (setNameSpace.Rd:19): Warning: missing </ul> before </div>
setQueryResultsLimit.html:53:1 (setQueryResultsLimit.Rd:16): Warning: missing </ul> before </div>
sub-ExternalReference-method.html:63:1 (sub-ExternalReference-method.Rd:17): Warning: missing </ul> before </div>
subset-ExternalReference-method.html:63:1 (subset-ExternalReference-method.Rd:17): Warning: missing </ul> before </div>
File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following HTML validation problems:
parse_redis_url.html:46:1 (parse_redis_url.Rd:10): Warning: missing </ul> before </div>
redis_api.html:57:1 (redis_api.Rd:17): Warning: missing </ul> before </div>
redis_multi.html:53:1 (redis_multi.Rd:12): Warning: missing </ul> before </div>
redis_scripts.html:59:1 (redis_scripts.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Finnegan <dan.finnegan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Finnegan",
                    role = c("aut", "cre"),
                    email = "dan.finnegan@gmail.com")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Found the following HTML validation problems:
expandGrpVar.html:48:1 (expandGrpVar.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) make_refreshable.Rd:13: Lost braces
    13 | not that quotes need to be escaped (code{\"}).}
       |                                         ^
Maintainer: ‘"David Hugh-Jones" <davidhughjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "\"David",
                    family = "Hugh-Jones\"",
                    role = c("aut", "cre"),
                    email = "davidhughjones@gmail.com")
as necessary.
Found the following HTML validation problems:
pffr.check.html:94:1 (pffr.check.Rd:40): Warning: missing </ul> before </div>
qq.pffr.html:93:1 (qq.pffr.Rd:41): Warning: missing </ul> before </div>
Found the following HTML validation problems:
make_linCom.html:56:1 (make_linCom.Rd:15): Warning: missing </ul> before </div>
make_muPC.html:55:1 (make_muPC.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘William Belzak <wbelzak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Belzak",
                    role = c("aut", "cre"),
                    email = "wbelzak@gmail.com")
as necessary.
Maintainer: ‘Daniel Crouch <djmcrouch@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J.M."),
                      family = "Crouch",
                      role = "aut"),
               person(given = c("Graham", "H.M.", "Goddard", "&", "Cathryn", "M."),
                      family = "Lewis",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Crouch",
                      role = "cre",
                      email = "djmcrouch@gmail.com"))
as necessary.
Found the following files/directories:
  ‘EnvironmentalA.txt’ ‘EnvironmentalB.txt’ ‘Example.txt’
  ‘Example_Predictions.txt’ ‘Example_RRDist.txt’
  ‘Example_RRDistCol.TIF’ ‘Example_RRDistGrey.TIF’ ‘GeneticA.txt’
  ‘GeneticB.txt’ ‘Inds.txt’
Maintainer: ‘Billy Buchanan <Billy.Buchanan@fayette.kyschools.us>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Billy",
                    family = "Buchanan",
                    role = c("aut", "cre"),
                    email = "billy.buchanan@fayette.kyschools.us")
as necessary.
Maintainer: ‘Daniel Antal <daniel.antal@ceemid.eu>’

The BugReports field in DESCRIPTION has
  https://github.com/rOpenGov/regions
which should likely be
  https://github.com/rOpenGov/regions/issues
instead.
checkRd: (-1) impute_down_nuts.Rd:21: Lost braces
    21 | NUTS typologies, defaults to code{"geo_var".}}
       |                                  ^
checkRd: (-1) validate_data_frame.Rd:19: Lost braces
    19 | NUTS typologies, defaults to code{"geo_var".}}
       |                                  ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/registr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gfpca_twoStep.Rd: gamm4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
crossprods_irregular.html:49:1 (crossprods_irregular.Rd:11): Warning: missing </ul> before </div>
crossprods_regular.html:49:1 (crossprods_regular.Rd:11): Warning: missing </ul> before </div>
initial_params.html:59:1 (initial_params.Rd:15): Warning: missing </ul> before </div>
mean_sim.html:46:1 (mean_sim.Rd:10): Warning: missing </ul> before </div>
psi1_sim.html:46:1 (psi1_sim.Rd:10): Warning: missing </ul> before </div>
psi2_sim.html:46:1 (psi2_sim.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘David Meyer <David.Meyer@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "david.meyer@r-project.org")
as necessary.
Found the following HTML validation problems:
REGModel.html:154:1 (REGModel.Rd:157): Warning: <h5> anchor "Usage" already defined
REGModel.html:160:1 (REGModel.Rd:161): Warning: <h5> anchor "Arguments" already defined
REGModel.html:185:1 (REGModel.Rd:176): Warning: <h5> anchor "Usage" already defined
REGModel.html:191:1 (REGModel.Rd:180): Warning: <h5> anchor "Arguments" already defined
REGModel.html:219:1 (REGModel.Rd:198): Warning: <h5> anchor "Usage" already defined
REGModel.html:225:1 (REGModel.Rd:202): Warning: <h5> anchor "Arguments" already defined
REGModel.html:248:1 (REGModel.Rd:215): Warning: <h5> anchor "Usage" already defined
REGModel.html:254:1 (REGModel.Rd:219): Warning: <h5> anchor "Arguments" already defined
REGModel.html:277:1 (REGModel.Rd:232): Warning: <h5> anchor "Usage" already defined
REGModel.html:283:1 (REGModel.Rd:236): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:136:1 (REGModelList.Rd:96): Warning: <h5> anchor "Usage" already defined
REGModelList.html:149:1 (REGModelList.Rd:107): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:173:1 (REGModelList.Rd:125): Warning: <h5> anchor "Returns" already defined
REGModelList.html:190:1 (REGModelList.Rd:134): Warning: <h5> anchor "Usage" already defined
REGModelList.html:202:1 (REGModelList.Rd:144): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:234:1 (REGModelList.Rd:166): Warning: <h5> anchor "Usage" already defined
REGModelList.html:240:1 (REGModelList.Rd:170): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:263:1 (REGModelList.Rd:183): Warning: <h5> anchor "Usage" already defined
REGModelList.html:269:1 (REGModelList.Rd:187): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
Replacer.html:130:1 (Replacer.Rd:98): Warning: <h5> anchor "Usage" already defined
Replacer.html:136:1 (Replacer.Rd:102): Warning: <h5> anchor "Arguments" already defined
Replacer.html:151:1 (Replacer.Rd:111): Warning: <h5> anchor "Returns" already defined
Replacer.html:158:1 (Replacer.Rd:114): Warning: <h5> anchor "Examples" already defined
Replacer.html:181:1 (Replacer.Rd:132): Warning: <h5> anchor "Usage" already defined
Replacer.html:187:1 (Replacer.Rd:136): Warning: <h5> anchor "Arguments" already defined
Replacer.html:204:1 (Replacer.Rd:147): Warning: <h5> anchor "Returns" already defined
Replacer.html:211:1 (Replacer.Rd:150): Warning: <h5> anchor "Examples" already defined
Replacer.html:231:1 (Replacer.Rd:165): Warning: <h5> anchor "Usage" already defined
Replacer.html:237:1 (Replacer.Rd:169): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
checkRd: (-1) fbase1.binomial.Rd:32: Lost braces; missing escapes or markup?
    32 | In all base log-likelihood functions, we have dropped any additive terms that are independent of the distribution parameter, e.g. constant terms or those terms that are dependent on the response variable only. This is done for computational efficiency. Therefore, these functions cannot be used to obtain the absolute values of log-likelihood functions but only in the context of optimization and/or sampling. Users can write thin wrappers around these functions to add the constant terms to the function value. (Derivatives do not need correction. For binomial family, all factorial terms are ignored since they only depend on \code{n} and {y}.)
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
Found the following HTML validation problems:
run_app.html:46:1 (run_app.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add.n.r.html:46:1 (add.n.r.Rd:10): Warning: missing </ul> before </div>
add.pr.html:54:1 (add.pr.Rd:14): Warning: missing </ul> before </div>
add.sig.html:50:1 (add.sig.Rd:12): Warning: missing </ul> before </div>
scale_01.html:46:1 (scale_01.Rd:10): Warning: missing </ul> before </div>
test_coef_equality.html:65:1 (test_coef_equality.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Pawel Teisseyre <teisseyrep@ipipan.waw.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pawel",
                      family = "Teisseyre",
                      role = c("aut", "cre"),
                      email = "teisseyrep@ipipan.waw.pl"),
               person(given = c("Robert", "A."),
                      family = "Klopotek",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
rcpp_RAMmult.html:78:1 (rcpp_RAMmult.Rd:26): Warning: missing </ul> before </div>
rcpp_fit_fun.html:108:1 (rcpp_fit_fun.Rd:48): Warning: missing </ul> before </div>
rcpp_grad_ram.html:103:1 (rcpp_grad_ram.Rd:45): Warning: missing </ul> before </div>
rcpp_quasi_calc.html:58:1 (rcpp_quasi_calc.Rd:16): Warning: missing </ul> before </div>
stabsel_par.html:138:1 (stabsel_par.Rd:66): Warning: missing </ul> before </div>
Maintainer: ‘Yanming Di<diy@stat.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yanming",
                    family = "Di",
                    role = c("aut", "cre"),
                    email = "diy@stat.oregonstate.edu")
as necessary.
Maintainer: ‘Mathieu Gautier <mathieu.gautier@supagro.inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mathieu",
                      family = "Gautier",
                      role = c("aut", "cre"),
                      email = "mathieu.gautier@supagro.inra.fr"),
               person(given = "Alexander",
                      family = "Klassmann",
                      role = "aut"),
               person(given = "Renaud",
                      family = "Vitalis",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) plot.ehh.Rd:27: Lost braces
    27 | \item{type}{plot type (see code{\link[graphics]{plot.default}} and \code{\link[graphics]{matplot}}). 
       |                                ^
checkRd: (-1) plot.ehhs.Rd:27: Lost braces
    27 | \item{type}{plot type (see code{\link[graphics]{plot.default}}.
       |                                ^
File ‘rehh/libs/rehh.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:116:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:134:1 (inst/NEWS.Rd:79): Warning: <h4> anchor "Changes-in-+E2+80+98C+2B+2B+E2+80+99-code+3A" already defined
NEWS.html:145:1 (inst/NEWS.Rd:85): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:160:1 (inst/NEWS.Rd:95): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:174:1 (inst/NEWS.Rd:102): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:189:1 (inst/NEWS.Rd:112): Warning: <h4> anchor "Changes-in-documentation+3A" already defined
NEWS.html:200:1 (inst/NEWS.Rd:117): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:215:1 (inst/NEWS.Rd:127): Warning: <h4> anchor "Changes-in-+E2+80+98C+2B+2B+E2+80+99-code+3A" already defined
NEWS.html:226:1 (inst/NEWS.Rd:133): Warning: <h4> anchor "Changes-in-documentation+3A" already defined
NEWS.html:237:1 (inst/NEWS.Rd:139): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:258:1 (inst/NEWS.Rd:152): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:273:1 (inst/NEWS.Rd:160): Warning: <h4> anchor "Changes-in-documentation+3A" already defined
NEWS.html:290:1 (inst/NEWS.Rd:168): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
Maintainer: ‘Calli Gross <calli@calligross.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Calli",
                    family = "Gross",
                    role = c("aut", "cre"),
                    email = "calli@calligross.de")
as necessary.
Maintainer: ‘Arnaud Buzzi <arnaud.buzzi@sia-partners.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Buzzi",
                    role = c("aut", "cre"),
                    email = "arnaud.buzzi@sia-partners.com")
as necessary.
Maintainer: ‘Fabien Laporte <fabien.laporte@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fabien",
                      family = "Laporte",
                      role = c("aut", "cre"),
                      email = "fabien.laporte@inra.fr"),
               person(given = "Tristan",
                      family = "Mary-Huard",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark S. Handcock <handcock@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mark", "S."),
                    family = "Handcock",
                    role = c("aut", "cre"),
                    email = "handcock@stat.ucla.edu")
as necessary.
Maintainer: ‘Miguel Rodríguez Asensio <miguel.rodriguezasensio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miguel", "Rodríguez"),
                    family = "Asensio",
                    role = c("aut", "cre"),
                    email = "miguel.rodriguezasensio@gmail.com")
as necessary.
checkRd: (-1) polarizacion_Dalton.Rd:26: Lost braces; missing escapes or markup?
    26 | {Pd = sqrt(sum(p_j*(x_j-mean(x_p))/4.5)^2)}
       | ^
checkRd: (-1) reparto_div.Rd:37: Lost braces; missing escapes or markup?
    37 | The set of divisors is formed by the odd numbers, that is {1,3,..,2n+1}.
       |                                                           ^
Maintainer: ‘Werner A. Stahel <stahel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Werner", "A."),
                    family = "Stahel",
                    role = c("aut", "cre"),
                    email = "stahel@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Carter T. Butts <buttsc@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carter", "T."),
                    family = "Butts",
                    role = c("aut", "cre"),
                    email = "buttsc@uci.edu")
as necessary.
checkRd: (-1) rem.dyad.Rd:121: Lost braces; missing escapes or markup?
   121 | \item Single or multiple covariates, time varying: For \code{CovSnd}, \code{CovRec}, or \code{CovInt}, an \code{m} by \code{p} by {n} array whose respective dimensions index time (i.e., event number), covariate, and actor.  For \code{CovEvent}, a \code{m} by \code{p} by \code{n} by \code{n} array, whose dimensions are analogous to the previous case.
       |                                                                                                                                   ^
Maintainer: ‘Kenneth Tay <kjytay@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Tay",
                      role = c("aut", "cre"),
                      email = "kjytay@stanford.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.

The Description field contains
  (2019) <arXiv:1912.01808> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexander I. Jordan <alexander.jordan@h-its.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michael Hernandez <michael@hernandez.ai>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Hernandez",
                      role = c("aut", "cre"),
                      email = "micahel@hernandez.ai"),
               person(given = "Yuri",
                      family = "Balasanov",
                      role = "aut"))
as necessary.
Maintainer: ‘David Firth <d.firth@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Firth", "with", "contributions", "from", "Heather"),
                      family = "Turner",
                      role = "aut"),
               person(given = "John",
                      family = "Fox",
                      role = "aut"),
               person(given = "David",
                      family = "Firth",
                      role = "cre",
                      email = "d.firth@warwick.ac.uk"))
as necessary.
Maintainer: ‘James M. Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("James", "M."),
                    family = "Curran",
                    role = c("aut", "cre"),
                    email = "j.curran@auckland.ac.nz")
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Tony Wang <xwang@imedacs.com>’

The Description field contains
  <arXiv:2203.02771>. Methods for missing-not-at-random include
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
commParams.html:126:1 (commParams.Rd:61): Warning: missing </ul> before </div>
get_class.html:64:1 (get_class.Rd:19): Warning: missing </ul> before </div>
prep_MCMC.html:89:1 (prep_MCMC.Rd:33): Warning: missing </ul> before </div>
updateMI.html:69:1 (updateMI.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
test_covar_fun.html:56:1 (test_covar_fun.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
EotCycle.html:107:1 (EotCycle.Rd:51): Warning: missing </ul> before </div>
Found the following HTML validation problems:
github_remote.html:89:1 (github_remote.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_dep_version.html:50:1 (get_dep_version.Rd:12): Warning: missing </ul> before </div>
install_if_not_installed.html:46:1 (install_if_not_installed.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Laurence Brandenberger <lbrandenberger@ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Laurence",
                    family = "Brandenberger",
                    role = c("aut", "cre"),
                    email = "lbrandenberger@ethz.ch")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
aomstats.html:165:1 (aomstats.Rd:102): Warning: <h3> anchor "attr_actors" already defined
aomstats.html:186:1 (aomstats.Rd:122): Warning: <h3> anchor "attr_dyads" already defined
remstats.html:217:1 (remstats.Rd:146): Warning: <h3> anchor "attr_actors" already defined
remstats.html:238:1 (remstats.Rd:166): Warning: <h3> anchor "attr_dyads" already defined
tomstats.html:182:1 (tomstats.Rd:116): Warning: <h3> anchor "attr_actors" already defined
tomstats.html:203:1 (tomstats.Rd:136): Warning: <h3> anchor "attr_dyads" already defined
Maintainer: ‘Miguel F. Acevedo <acevedo@unt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miguel", "F."),
                    family = "Acevedo",
                    role = c("aut", "cre"),
                    email = "acevedo@unt.edu")
as necessary.
Maintainer: ‘Minji Lee <minjilee101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minji",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "minjilee101@gmail.com"),
               person(given = "Zhihua",
                      family = "Su",
                      role = "aut"))
as necessary.
Maintainer: ‘Jordan Hayes <jhayes@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jordan",
                    family = "Hayes",
                    role = c("aut", "cre"),
                    email = "jhayes@ucr.edu")
as necessary.
Found the following HTML validation problems:
remote.html:49:1 (remote.Rd:12): Warning: missing </ul> before </div>
vendor.html:72:1 (vendor.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Juan Carlos Aledo <caledo@uma.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Carlos"),
                    family = "Aledo",
                    role = c("aut", "cre"),
                    email = "caledo@uma.es")
as necessary.
Maintainer: ‘Gourav Kumar Vani <kumaragri.vani1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gourav", "Kumar"),
                      family = "Vani",
                      role = c("aut", "cre"),
                      email = "kumaragri.vani1@gmail.com"),
               person(given = c("Dr.", "Vivek"),
                      family = "Badhe",
                      role = "aut",
                      email = "vivekbadhe.jbp@gmail.com"))
as necessary.
Found the following HTML validation problems:
all_checklists.html:50:1 (all_checklists.Rd:12): Warning: missing </ul> before </div>
cards_info.html:46:1 (cards_info.Rd:10): Warning: missing </ul> before </div>
check_new_tasks.html:50:1 (check_new_tasks.Rd:12): Warning: missing </ul> before </div>
compare_checklists.html:50:1 (compare_checklists.Rd:12): Warning: missing </ul> before </div>
get_board_id.html:46:1 (get_board_id.Rd:10): Warning: missing </ul> before </div>
get_checklist.html:50:1 (get_checklist.Rd:12): Warning: missing </ul> before </div>
set_key_token.html:56:1 (set_key_token.Rd:14): Warning: missing </ul> before </div>
trello_updates.html:58:1 (trello_updates.Rd:16): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) twosidedPValuestobins.Rd:84: Lost braces; missing escapes or markup?
    84 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
checkRd: (-1) ztobins.Rd:90: Lost braces; missing escapes or markup?
    90 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
Found the following HTML validation problems:
Evaluate.html:53:1 (Evaluate.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) method.A.Rd:200-205: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:206-211: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:231-236: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:237-242: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:201-206: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:207-212: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:232-237: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:238-243: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.
Maintainer: ‘Dzmitry G Batrakou <d.batrakou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dzmitry", "G"),
                    family = "Batrakou",
                    role = c("aut", "cre"),
                    email = "d.batrakou@gmail.com")
as necessary.
Maintainer: ‘David Hervas Marin <ddhervas@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "Hervas"),
                    family = "Marin",
                    role = c("aut", "cre"),
                    email = "ddhervas@yahoo.es")
as necessary.
Maintainer: ‘Nick Parsons <nick.parsons@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Parsons",
                    role = c("aut", "cre"),
                    email = "nick.parsons@warwick.ac.uk")
as necessary.
Maintainer: ‘Francesco Napolitano <franapoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francesco",
                    family = "Napolitano",
                    role = c("aut", "cre"),
                    email = "franapoli@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) repo_build.Rd:44-47: Lost braces
    44 | ## chunk "item 1" {
       |                   ^
checkRd: (-1) repo_dependencies.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) repo_dependencies.Rd:49-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) repo_dependencies.Rd:51-53: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
addspace.html:46:1 (addspace.Rd:10): Warning: missing </ul> before </div>
cap.html:46:1 (cap.Rd:10): Warning: missing </ul> before </div>
formatp.html:47:1 (formatp.Rd:10): Warning: missing </ul> before </div>
ggkmcif2Parameters.html:312:1 (ggkmcif2Parameters.Rd:184): Warning: missing </ul> before </div>
hbld.html:46:1 (hbld.Rd:10): Warning: missing </ul> before </div>
lbld.html:46:1 (lbld.Rd:10): Warning: missing </ul> before </div>
lpvalue.html:50:1 (lpvalue.Rd:12): Warning: missing </ul> before </div>
niceNum.html:50:1 (niceNum.Rd:12): Warning: missing </ul> before </div>
nicename.html:52:1 (nicename.Rd:13): Warning: missing </ul> before </div>
psthr.html:50:1 (psthr.Rd:12): Warning: missing </ul> before </div>
pstprn.html:46:1 (pstprn.Rd:10): Warning: missing </ul> before </div>
pvalue.html:51:1 (pvalue.Rd:12): Warning: missing </ul> before </div>
rmds.html:46:1 (rmds.Rd:10): Warning: missing </ul> before </div>
sanitizestr.html:48:1 (sanitizestr.Rd:10): Warning: missing </ul> before </div>
xvar_function.default.html:46:1 (xvar_function.default.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Fischer <daniel.fischer@luke.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Fischer",
                      role = c("aut", "cre"),
                      email = "daniel.fischer@luke.fi"),
               person(given = "Alain",
                      family = "Berro",
                      role = "aut"),
               person(given = "Klaus",
                      family = "Nordhausen",
                      role = "aut"),
               person(given = "Anne",
                      family = "Ruiz-Gazen",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dist_col_type.html:67:1 (dist_col_type.Rd:22): Warning: missing </ul> before </div>
within_category_compare_cpp.html:78:1 (within_category_compare_cpp.Rd:31): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Analyze.html:54:1 (Analyze.Rd:14): Warning: missing </ul> before </div>
Cook.html:54:1 (Cook.Rd:14): Warning: missing </ul> before </div>
Gather.html:50:1 (Gather.Rd:12): Warning: missing </ul> before </div>
OutputFile.html:46:1 (OutputFile.Rd:10): Warning: missing </ul> before </div>
Present.html:58:1 (Present.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
reprex_addin.html:98:1 (reprex_addin.Rd:38): Warning: missing </ul> before </div>
reprex_venue.html:53:1 (reprex_venue.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Cache.html:325:1 (Cache.Rd:231): Warning: <h3> anchor "quick" already defined
checkRelative.html:73:1 (checkRelative.Rd:28): Warning: missing </ul> before </div>
cloudDownload.html:95:1 (cloudDownload.Rd:45): Warning: missing </ul> before </div>
cloudUploadFromCache.html:91:1 (cloudUploadFromCache.Rd:43): Warning: missing </ul> before </div>
dot-removeCacheAtts.html:46:1 (dot-removeCacheAtts.Rd:10): Warning: missing </ul> before </div>
downloadRemote.html:162:1 (downloadRemote.Rd:98): Warning: missing </ul> before </div>
guessAtTarget.html:57:1 (guessAtTarget.Rd:20): Warning: missing </ul> before </div>
purge.html:113:1 (purge.Rd:65): Warning: missing </ul> before </div>
remapFilenames.html:59:1 (remapFilenames.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
isReproducible.html:68:1 (isReproducible.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
repr_-times-.data.table.html:57:1 (repr_-times-.data.table.Rd:19): Warning: missing </ul> before </div>
repr_-times-.factor.html:57:1 (repr_-times-.factor.Rd:19): Warning: missing </ul> before </div>
repr_-times-.function.html:65:1 (repr_-times-.function.Rd:23): Warning: missing </ul> before </div>
repr_-times-.help_files_with_topic.html:57:1 (repr_-times-.help_files_with_topic.Rd:19): Warning: missing </ul> before </div>
repr_-times-.list.html:57:1 (repr_-times-.list.Rd:19): Warning: missing </ul> before </div>
repr_-times-.vector.html:106:1 (repr_-times-.vector.Rd:66): Warning: missing </ul> before </div>
repr_geojson.-times.html:102:1 (repr_geojson.-times.Rd:63): Warning: missing </ul> before </div>
repr_plotly1.-times.html:54:1 (repr_plotly1.-times.Rd:16): Warning: missing </ul> before </div>
repr_vega-times.html:51:1 (repr_vega-times.Rd:13): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate_impact.R’ ‘plot_repsd.R’ ‘repsd_pval.R’
Maintainer: ‘Yupeng He <yupeng.he.bioinfo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yupeng",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "yupeng.he.bioinfo@gmail.com")
as necessary.
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Require2.R’ ‘helpers.R’ ‘pak.R’ ‘pkgDep3.R’
Found the following HTML validation problems:
availablePackagesOverride.html:84:1 (availablePackagesOverride.Rd:38): Warning: missing </ul> before </div>
availableVersionOK.html:46:1 (availableVersionOK.Rd:10): Warning: missing </ul> before </div>
checkLibPaths.html:66:1 (checkLibPaths.Rd:24): Warning: missing </ul> before </div>
chooseCRANmirror2.html:46:1 (chooseCRANmirror2.Rd:10): Warning: missing </ul> before </div>
clearRequire.html:86:1 (clearRequire.Rd:43): Warning: missing </ul> before </div>
dealWithMissingLibPaths.html:71:1 (dealWithMissingLibPaths.Rd:31): Warning: missing </ul> before </div>
doLibPaths.html:63:1 (doLibPaths.Rd:25): Warning: missing </ul> before </div>
dot-installed.pkgs.html:99:1 (dot-installed.pkgs.Rd:49): Warning: missing </ul> before </div>
envPkgCreate.html:47:1 (envPkgCreate.Rd:11): Warning: missing </ul> before </div>
getCRANrepos.html:53:1 (getCRANrepos.Rd:12): Warning: missing </ul> before </div>
linkOrCopy.html:55:1 (linkOrCopy.Rd:16): Warning: missing </ul> before </div>
rmBase.html:52:1 (rmBase.Rd:14): Warning: missing </ul> before </div>
setLinuxBinaryRepo.html:56:1 (setLinuxBinaryRepo.Rd:15): Warning: missing </ul> before </div>
setup.html:94:1 (setup.Rd:44): Warning: missing </ul> before </div>
Found the following HTML validation problems:
disk.html:54:1 (disk.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
residuals.reReg.html:72:1 (residuals.reReg.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) NCBirths2004.Rd:16: Lost braces
    16 |     \item{\code{Smoker}}{Mother a smoker? code{No}, \code{Yes}}
       |                                               ^
Maintainer: ‘Tim Hesterberg <timhesterberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Hesterberg",
                    role = c("aut", "cre"),
                    email = "timhesterberg@gmail.com")
as necessary.
checkRd: (-1) ExpandProbs.Rd:35: Lost braces; missing escapes or markup?
    35 |      {z_probs2 sqrt((n-1)/n) = t_probs,n-1}
       |      ^
Found the following HTML validation problems:
diss_to_neighbors.html:93:1 (diss_to_neighbors.Rd:45): Warning: missing </ul> before </div>
format_xr_xu_indices.html:46:1 (format_xr_xu_indices.Rd:10): Warning: missing </ul> before </div>
ith_subsets_ortho_diss.html:62:1 (ith_subsets_ortho_diss.Rd:18): Warning: missing </ul> before </div>
local_ortho_diss.html:86:1 (local_ortho_diss.Rd:36): Warning: missing </ul> before </div>
pkg_info.html:46:1 (pkg_info.Rd:10): Warning: missing </ul> before </div>
sub-.local_ortho_diss.html:63:1 (sub-.local_ortho_diss.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Sean Turner <swd.turner@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) cast.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) cast.Rd:46: Escaped LaTeX specials: \_
File ‘reshape2/libs/reshape2.so’:
  Found non-API calls to R: ‘OBJECT’, ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
add_margins.html:57:1 (add_margins.Rd:16): Warning: missing </ul> before </div>
guess_value.html:55:1 (guess_value.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Konstantin Hopf <konstantin.hopf@uni-bamberg.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘to_df.R’
Found the following HTML validation problems:
print.ResIN.html:51:1 (print.ResIN.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) resistance.Rd:52: Lost braces
    52 |     \item B. Bollob\'{a}s, 1998.  \emph{Modern Graph Theory}.  Springer.
       |                      ^
Maintainer: ‘Maeve Upton <uptonmaeve010@gmail.com>’

The Description field contains
  et al 2023) <arXiv:2301.09556>, spatio-temporal splines (Upton et al
  2023) <arXiv:2301.09556> and generalised additive models (Upton et al
  2023) <arXiv:2301.09556>.  This package facilitates data loading, model
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yannick Marcon <yannick.marcon@obiba.org>’

The BugReports field in DESCRIPTION has
  https://github.com/obiba/resourcer
which should likely be
  https://github.com/obiba/resourcer/issues
instead.
Found the following HTML validation problems:
convert_MR_print.html:62:1 (convert_MR_print.Rd:18): Warning: missing </ul> before </div>
flow_unit_parse.html:50:1 (flow_unit_parse.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ben Waxer <bwaxer@auriq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Waxer",
                    role = c("aut", "cre"),
                    email = "bwaxer@auriq.com")
as necessary.

The Description field contains
  http://www.auriq.com/documentation/source/install/index.html.
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
print.status.html:52:1 (print.status.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Dmitry Selivanov <selivanov.dmitriy@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#RestRserve_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_result.Rd’ ‘bind.R’ ‘bind.Rd’ ‘result.R’ ‘result.Rd’
Found the following HTML validation problems:
resumer.html:101:1 (resumer.Rd:45): Warning: missing </ul> before </div>
Maintainer: ‘Miron B. Kursa <M.Kursa@icm.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miron", "B."),
                    family = "Kursa",
                    role = c("aut", "cre"),
                    email = "m.kursa@icm.edu.pl")
as necessary.
Found the following HTML validation problems:
close.RethinkDB_connection.html:51:1 (close.RethinkDB_connection.Rd:12): Warning: missing </ul> before </div>
close.RethinkDB_cursor.html:52:1 (close.RethinkDB_cursor.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
eng_python.html:154:1 (eng_python.Rd:81): Warning: missing </ul> before </div>
miniconda-params.html:42:1 (miniconda-params.Rd:9): Warning: missing </ul> before </div>
py_config_error_message.html:46:1 (py_config_error_message.Rd:10): Warning: missing </ul> before </div>
py_del_attr.html:50:1 (py_del_attr.Rd:12): Warning: missing </ul> before </div>
py_help.html:46:1 (py_help.Rd:10): Warning: missing </ul> before </div>
py_require.html:241:1 (py_require.Rd:164): Warning: missing </ul> before </div>
py_set_attr.html:54:1 (py_set_attr.Rd:14): Warning: missing </ul> before </div>
py_to_r_wrapper.html:48:1 (py_to_r_wrapper.Rd:10): Warning: missing </ul> before </div>
register_class_filter.html:47:1 (register_class_filter.Rd:11): Warning: missing </ul> before </div>
register_help_topics.html:50:1 (register_help_topics.Rd:12): Warning: missing </ul> before </div>
with-as-operator.html:50:1 (with-as-operator.Rd:13): Warning: missing </ul> before </div>
with.python.builtin.object.html:64:1 (with.python.builtin.object.Rd:17): Warning: missing </ul> before </div>
checkRd: (-1) harmonize_values.Rd:44: Lost braces; missing escapes or markup?
    44 | \item{perl}{Use perl-like regex? Defaults to {FALSE}.}
       |                                              ^
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Koohafkan",
                    role = c("aut", "cre"),
                    email = "michael.koohafkan@gmail.com")
as necessary.
Maintainer: ‘Julien Boelaert <jubo.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Boelaert",
                    role = c("aut", "cre"),
                    email = "jubo.stats@gmail.com")
as necessary.
checkRd: (-1) cpUpper.Rd:39: Lost braces
    39 | \code{"fastfloyd"}{ (default) uses an iterative variant of the Floyd-Warshall algorithm, in which the check of consistency of the current observation with a given cluster is done in a single step of the Floyd-Warshall algorithm. Much faster than \code{"floyd"}.}
       |                   ^
checkRd: (-1) cpUpper.Rd:41: Lost braces
    41 | \code{"floyd"}{ uses the algorithm described in Crawford and Pendakur (2013): at each step the complete Floyd-Warshall algorithm is run to check whether each cluster can accomodate the current observation.}
       |               ^
checkRd: (-1) rec.Rd:23: Escaped LaTeX specials: \$
Found the following HTML validation problems:
extract_refs.html:46:1 (extract_refs.Rd:10): Warning: missing </ul> before </div>
extract_sections.html:50:1 (extract_sections.Rd:12): Warning: missing </ul> before </div>
read_docx.html:46:1 (read_docx.Rd:10): Warning: missing </ul> before </div>
read_md.html:46:1 (read_md.Rd:10): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:297:1 (inst/NEWS.Rd:139): Warning: missing </ul> before </div>
NEWS.html:67:1 (inst/NEWS.Rd:31): Warning: <h4> anchor "Changed" already defined
NEWS.html:85:1 (inst/NEWS.Rd:40): Warning: <h4> anchor "Added" already defined
NEWS.html:100:1 (inst/NEWS.Rd:47): Warning: <h4> anchor "Changed" already defined
NEWS.html:125:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "Changed" already defined
NEWS.html:142:1 (inst/NEWS.Rd:66): Warning: <h4> anchor "Added" already defined
NEWS.html:157:1 (inst/NEWS.Rd:74): Warning: <h4> anchor "Changed" already defined
NEWS.html:186:1 (inst/NEWS.Rd:88): Warning: <h4> anchor "Changed" already defined
NEWS.html:207:1 (inst/NEWS.Rd:98): Warning: <h4> anchor "Fixed" already defined
NEWS.html:222:1 (inst/NEWS.Rd:106): Warning: <h4> anchor "Changed" already defined
NEWS.html:239:1 (inst/NEWS.Rd:113): Warning: <h4> anchor "Added" already defined
NEWS.html:253:1 (inst/NEWS.Rd:119): Warning: <h4> anchor "Fixed" already defined
NEWS.html:268:1 (inst/NEWS.Rd:127): Warning: <h4> anchor "Fixed" already defined
NEWS.html:283:1 (inst/NEWS.Rd:135): Warning: <h4> anchor "Added" already defined
checkRd: (-1) saveRev.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{use_wd}{logical - If TRUE, the history will be prepended by setwd({'users current working directory'}). This function will set the script's working directory to
       |                                                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_an_exercise.Rd’ ‘define_exercises.Rd’
    ‘define_exercises_from_csv.Rd’ ‘define_exercises_from_excel.Rd’
'::' or ':::' import not declared from: ‘Matrix’
'library' or 'require' call not declared from: ‘Matrix’
Found the following HTML validation problems:
register_shortcuts.html:48:1 (register_shortcuts.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Pablo Barbera <pbarbera@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Barbera",
                      role = c("aut", "cre"),
                      email = "pbarbera@usc.edu"),
               person(given = "Michael",
                      family = "Piccirilli",
                      role = "aut",
                      email = "mrp2181@columbia.edu"),
               person(given = "Andrew",
                      family = "Geisler",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
callAPI.html:57:1 (callAPI.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ankur",
                      family = "Chakravarthy",
                      role = c("aut", "cre"),
                      email = "ankur.chakravarthy.10@ucl.ac.uk"),
               person(family = "PhD",
                      role = "aut"))
as necessary.
Maintainer: ‘Shangzhi Hong <shangzhi-hong@hotmail.com>’

The Description field contains
  <arXiv:2004.14823>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Miron Bartosz Kursa <M.Kursa@icm.edu.pl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
parse_sensor.html:46:1 (parse_sensor.Rd:10): Warning: missing </ul> before </div>
parse_station.html:46:1 (parse_station.Rd:10): Warning: missing </ul> before </div>
parse_timepoint.html:46:1 (parse_timepoint.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) fs_search.Rd:76: Lost braces
    76 | \\code{\link{fs_auth}} \code{\link{fs_browse}}
       |       ^
Found the following HTML validation problems:
fs_add_author.html:54:1 (fs_add_author.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘common_names.R’ ‘distribution.R’ ‘fb_tbl.R’
Maintainer: ‘Karthik Ram <karthik.ram@gmail.com>’

The Description field contains
  of the 'rOpenSci' suite (http://ropensci.org).
Please enclose URLs in angle brackets (<...>).

The BugReports field in DESCRIPTION has
  http://www.github.com/ropensci/rfisheries/issues/new
which should likely be
  http://www.github.com/ropensci/rfisheries/issues/new/issues
instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘John Kloke <johndkloke@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Kloke",
                      role = c("aut", "cre"),
                      email = "johndkloke@gmail.com"),
               person(given = "Joseph",
                      family = "McKean",
                      role = "aut"))
as necessary.
Maintainer: ‘Matthias Kohl <Matthias.Kohl@stamats.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dimitri",
                      family = "Justeau-Allaire",
                      role = c("aut", "cre"),
                      email = "dimitri.justeau@gmail.com"),
               person(given = "Grégoire",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Ibanez",
                      role = "aut"),
               person(given = "Xavier",
                      family = "Lorca",
                      role = "aut"),
               person(given = "Ghislain",
                      family = "Vieilledent",
                      role = "aut"),
               person(given = "Philippe",
                      family = "Birnbaum",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
'library' or 'require' calls not declared from:
  ‘rpanel’ ‘tkrplot’
Found the following HTML validation problems:
autohonestRF.html:47:1 (autohonestRF.Rd:10): Warning: missing </ul> before </div>
forest_checker.html:46:1 (forest_checker.Rd:10): Warning: missing </ul> before </div>
honestRF.html:47:1 (honestRF.Rd:10): Warning: missing </ul> before </div>
loadForestry-forestry.html:47:1 (loadForestry-forestry.Rd:10): Warning: missing </ul> before </div>
relinkCPP.html:47:1 (relinkCPP.Rd:10): Warning: missing </ul> before </div>
saveForestry-forestry.html:55:1 (saveForestry-forestry.Rd:14): Warning: missing </ul> before </div>
testing_data_checker-forestry.html:54:1 (testing_data_checker-forestry.Rd:15): Warning: missing </ul> before </div>
training_data_checker-forestry.html:191:1 (training_data_checker-forestry.Rd:109): Warning: missing </ul> before </div>
Found the following HTML validation problems:
QICu.geeglm.html:46:1 (QICu.geeglm.Rd:10): Warning: missing </ul> before </div>
adj.r.squared.html:50:1 (adj.r.squared.Rd:12): Warning: missing </ul> before </div>
apress.html:50:1 (apress.Rd:12): Warning: missing </ul> before </div>
int.p.val.html:50:1 (int.p.val.Rd:12): Warning: missing </ul> before </div>
max_abs_resid.html:46:1 (max_abs_resid.Rd:10): Warning: missing </ul> before </div>
r.squared.html:50:1 (r.squared.Rd:12): Warning: missing </ul> before </div>
rmse.html:50:1 (rmse.Rd:12): Warning: missing </ul> before </div>
which.max.na.html:46:1 (which.max.na.Rd:10): Warning: missing </ul> before </div>
which.min.na.html:46:1 (which.min.na.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Markus Loecher <Markus.Loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Loecher",
                    role = c("aut", "cre"),
                    email = "Markus.Loecher@gmail.com")
as necessary.
Found the following HTML validation problems:
data_transformer.html:109:1 (data_transformer.Rd:99): Warning: <h5> anchor "Usage" already defined
data_transformer.html:123:1 (data_transformer.Rd:108): Warning: <h5> anchor "Usage" already defined
data_transformer.html:139:1 (data_transformer.Rd:118): Warning: <h5> anchor "Usage" already defined
data_transformer.html:179:1 (data_transformer.Rd:146): Warning: <h5> anchor "Usage" already defined
data_transformer.html:193:1 (data_transformer.Rd:155): Warning: <h5> anchor "Usage" already defined
data_transformer.html:209:1 (data_transformer.Rd:165): Warning: <h5> anchor "Usage" already defined
data_transformer.html:215:1 (data_transformer.Rd:169): Warning: <h5> anchor "Arguments" already defined
data_transformer.html:228:1 (data_transformer.Rd:176): Warning: <h5> anchor "Examples" already defined
data_transformer.html:248:1 (data_transformer.Rd:192): Warning: <h5> anchor "Usage" already defined
data_transformer.html:262:1 (data_transformer.Rd:201): Warning: <h5> anchor "Usage" already defined
data_transformer.html:278:1 (data_transformer.Rd:211): Warning: <h5> anchor "Usage" already defined
data_transformer.html:284:1 (data_transformer.Rd:215): Warning: <h5> anchor "Arguments" already defined
data_transformer.html:297:1 (data_transformer.Rd:222): Warning: <h5> anchor "Examples" already defined
data_transformer.html:320:1 (data_transformer.Rd:240): Warning: <h5> anchor "Usage" already defined
data_transformer.html:326:1 (data_transformer.Rd:244): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Joseph Kelly <josephkelly@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joseph",
                      family = "Kelly",
                      role = c("aut", "cre"),
                      email = "josephkelly@post.harvard.edu"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = "aut"),
               person(given = "Carl",
                      family = "Morris",
                      role = "aut"))
as necessary.
Maintainer: ‘Cristian Quiroz-Moreno <cristianquirozd1997@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
checkRd: (-1) GenDataPopulation.Rd:21: Lost braces
    21 | {data}{Population of data}
       |       ^
checkRd: (-1) GenDataSample.Rd:23: Lost braces
    23 | {data}{Sample of data}
       |       ^
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Maintainer: ‘Lorenzo Rimella <lorenzo.rimella@hotmail.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenzo",
                    family = "Rimella",
                    role = c("aut", "cre"),
                    email = "lorenzo.rimella@hotmail.it")
as necessary.
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

The Description field contains
  Miolane et al. (2020) <arXiv:2004.04667>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘connection.R’ ‘level-set.R’ ‘lie-group.R’ ‘manifold.R’ ‘open-set.R’
    ‘spd-matrices.R’ ‘utils.R’
checkRd: (-1) RiemannianMetric.Rd:450-453: Lost braces
   450 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
checkRd: (-1) RiemannianMetric.Rd:484-487: Lost braces
   484 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
checkRd: (-1) RiemannianMetric.Rd:588-591: Lost braces
   588 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
Maintainer: ‘Jose Miguel Cotes Torres <jmcotes@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "Miguel", "Cotes", "Torres.", "Universidad", "Nacional", "de", "Colombia", "-", "Sede"),
                      family = "Medellin",
                      role = "aut"),
               person(given = c("Jose", "Miguel", "Cotes"),
                      family = "Torres",
                      role = "cre",
                      email = "jmcotes@unal.edu.co"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (JOSS reviewer), Jonathan Cardoso Silva [rev] (JOSS reviewer)’
  Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (what: JOSS reviewer), Jonathan Cardoso Silva [rev] (what: JOSS reviewer)’
checkRd: (-1) Ghana_2021_school_attendance.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Ghana_2021_school_attendance_geometry.Rd:75: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Virgilio Gómez-Rubio <virgilio.gomez@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("María", "José"),
                      family = "Haro-Delicado",
                      role = "aut"),
               person(given = "Virgilio",
                      family = "Gómez-Rubio",
                      role = c("aut", "cre"),
                      email = "virgilio.gomez@uclm.es"),
               person(given = "Francisco",
                      family = "Parreńo-Torres",
                      role = "aut"))
as necessary.
Maintainer: ‘Danail Obreschkow <danail.obreschkow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danail",
                    family = "Obreschkow",
                    role = c("aut", "cre"),
                    email = "danail.obreschkow@gmail.com")
as necessary.
Maintainer: ‘Francisco Richter <richtf@usi.ch>’

The Description field contains
  Environments." <arXiv:2304.01956>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
gn_debug.html:46:1 (gn_debug.Rd:10): Warning: missing </ul> before </div>
install_gnparser.html:79:1 (install_gnparser.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check.functions.html:62:1 (check.functions.Rd:18): Warning: missing </ul> before </div>
power_studies_results.html:47:1 (power_studies_results.Rd:11): Warning: missing </ul> before </div>
pvaluecdf.html:47:1 (pvaluecdf.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Jalpa Joshi Dave <jalpa@tatvic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jalpa", "Joshi"),
                    family = "Dave",
                    role = c("aut", "cre"),
                    email = "jalpa@tatvic.com")
as necessary.
Found the following HTML validation problems:
ValidateToken.html:47:1 (ValidateToken.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
archive_course.html:46:1 (archive_course.Rd:10): Warning: missing </ul> before </div>
commit_to_form.html:54:1 (commit_to_form.Rd:14): Warning: missing </ul> before </div>
create_topic.html:50:1 (create_topic.Rd:12): Warning: missing </ul> before </div>
delete_course.html:46:1 (delete_course.Rd:10): Warning: missing </ul> before </div>
delete_coursework.html:50:1 (delete_coursework.Rd:12): Warning: missing </ul> before </div>
get_course_properties.html:46:1 (get_course_properties.Rd:10): Warning: missing </ul> before </div>
get_coursework_properties.html:50:1 (get_coursework_properties.Rd:12): Warning: missing </ul> before </div>
get_drive_file_list.html:46:1 (get_drive_file_list.Rd:10): Warning: missing </ul> before </div>
get_topic_properties.html:50:1 (get_topic_properties.Rd:12): Warning: missing </ul> before </div>
is.google_forms_request.html:46:1 (is.google_forms_request.Rd:10): Warning: missing </ul> before </div>
publish_coursework.html:50:1 (publish_coursework.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Marcin Szymanski <ms32035@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcin",
                    family = "Szymanski",
                    role = c("aut", "cre"),
                    email = "ms32035@gmail.com")
as necessary.
Found the following HTML validation problems:
GetFitDataset.html:60:1 (GetFitDataset.Rd:16): Warning: missing </ul> before </div>
GetFitDatasource.html:51:1 (GetFitDatasource.Rd:12): Warning: missing </ul> before </div>
GetFitDatasources.html:46:1 (GetFitDatasources.Rd:10): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Michal Bojanowski [aut, cre] (<https://orcid.org/0000-0001-7503-852X>, Kozminski University), David Schoch [aut] (<https://orcid.org/0000-0003-2952-4812>)’
  Authors@R: ‘Michal Bojanowski [aut, cre] (ORCID: <https://orcid.org/0000-0001-7503-852X>, affil: Kozminski University), David Schoch [aut] (ORCID: <https://orcid.org/0000-0003-2952-4812>)’
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Found the following HTML validation problems:
grid.utext.html:58:1 (grid.utext.Rd:14): Warning: missing </ul> before </div>
grid.utextvp.html:58:1 (grid.utextvp.Rd:14): Warning: missing </ul> before </div>
splitString.html:47:1 (splitString.Rd:11): Warning: missing </ul> before </div>
splitTextGrob.html:51:1 (splitTextGrob.Rd:12): Warning: missing </ul> before </div>
utextDynamic.html:63:1 (utextDynamic.Rd:15): Warning: missing </ul> before </div>
utextStatic.html:64:1 (utextStatic.Rd:17): Warning: missing </ul> before </div>
utextvpDynamic.html:67:1 (utextvpDynamic.Rd:16): Warning: missing </ul> before </div>
utextvpStatic.html:68:1 (utextvpStatic.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
GreenplumResult-class.html:51:1 (GreenplumResult-class.Rd:13): Warning: missing </ul> before </div>
dbConnect-GreenplumDriver-method.html:92:1 (dbConnect-GreenplumDriver-method.Rd:41): Warning: missing </ul> before </div>
greenplum-tables.html:97:1 (greenplum-tables.Rd:39): Warning: missing </ul> before </div>
hidden_aliases.html:89:1 (hidden_aliases.Rd:41): Warning: missing </ul> before </div>
checkRd: (-1) code_sawtooth_design.Rd:53: Lost braces
    53 | /url{http://www.sawtoothsoftware.com/help/lighthouse-studio/manual/index.html?hid_web_cbc_exporting.html}
       |     ^
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Found the following HTML validation problems:
CheckJRERuntimeVersion.html:48:1 (CheckJRERuntimeVersion.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Yichuan Bai <ycbai@iastate.edu>’

The Description field contains
  <arXiv:2307.12325>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam Mantz <amantz@slac.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Mantz",
                    role = c("aut", "cre"),
                    email = "amantz@slac.stanford.edu")
as necessary.
checkRd: (-1) rhandsontable-package.Rd:8: Lost braces
     8 | R interface for creating tables using Handsontable, url{https://handsontable.com/}
       |                                                        ^
Found the following HTML validation problems:
set_data.html:66:1 (set_data.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gerry Tonkin-Hill <g.tonkinhill@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Victhor Sartório <victhor@dme.ufrj.br>’

The Description field contains
  See Neal (2017) <arXiv:1701.02434> for further details on Hamiltonian
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rezgar", "Arabzadeh;", "Shahab"),
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = "cre",
                      email = "rezgararabzadeh@ut.ac.ir"))
as necessary.
Maintainer: ‘Shonosuke Sugasawa <shonosuke622@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shonosuke",
                    family = "Sugasawa",
                    role = c("aut", "cre"),
                    email = "shonosuke622@gmail.com")
as necessary.
Found the following HTML validation problems:
cash-.rating.set.html:51:1 (cash-.rating.set.Rd:12): Warning: missing </ul> before </div>
contingency_table.html:58:1 (contingency_table.Rd:16): Warning: missing </ul> before </div>
kappa_ct.html:46:1 (kappa_ct.Rd:10): Warning: missing </ul> before </div>
random_contingency_table.html:73:1 (random_contingency_table.Rd:27): Warning: missing </ul> before </div>
sample_contingency_table.html:54:1 (sample_contingency_table.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Christophe Dutang <christophe.dutang@ensimag.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christophe",
                      family = "Dutang",
                      role = c("aut", "cre"),
                      email = "christophe.dutang@ensimag.fr"),
               person(given = "Julie",
                      family = "Barthes",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘mydata.rda’ ‘thedata.rda’
checkRd: (-1) GenerateClusterData.Rd:34: Lost braces; missing escapes or markup?
    34 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2},
       |                                                ^
checkRd: (-1) GenerateClusterData.Rd:35: Lost braces; missing escapes or markup?
    35 | -v_{(numberOfClusters-1)/2} (if \code{numberOfClusters} is odd)
       |    ^
checkRd: (-1) GenerateClusterData.Rd:36: Lost braces; missing escapes or markup?
    36 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2}
       |                                                ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:25-26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:27-28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:29-30: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:31-32: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:33-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:35-36: Lost braces
    35 |    \item{pam_cluster_64_7_5715},{N=64, seven clusters with 5715 vectors per
       |                                 ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:37-38: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:39-40: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
Found the following HTML validation problems:
ComputeAverageTime.html:53:1 (ComputeAverageTime.Rd:13): Warning: missing </ul> before </div>
ComputeStandardDeviation.html:54:1 (ComputeStandardDeviation.Rd:13): Warning: missing </ul> before </div>
CrossprodAllocator.html:58:1 (CrossprodAllocator.Rd:16): Warning: missing </ul> before </div>
DeformtransAllocator.html:59:1 (DeformtransAllocator.Rd:16): Warning: missing </ul> before </div>
DeterminantAllocator.html:58:1 (DeterminantAllocator.Rd:16): Warning: missing </ul> before </div>
EigenAllocator.html:58:1 (EigenAllocator.Rd:16): Warning: missing </ul> before </div>
LsfitAllocator.html:57:1 (LsfitAllocator.Rd:16): Warning: missing </ul> before </div>
MatmatAllocator.html:59:1 (MatmatAllocator.Rd:16): Warning: missing </ul> before </div>
MatvecAllocator.html:59:1 (MatvecAllocator.Rd:16): Warning: missing </ul> before </div>
QrAllocator.html:59:1 (QrAllocator.Rd:16): Warning: missing </ul> before </div>
SolveAllocator.html:59:1 (SolveAllocator.Rd:17): Warning: missing </ul> before </div>
SparseCholeskyAllocator.html:58:1 (SparseCholeskyAllocator.Rd:16): Warning: missing </ul> before </div>
SparseLuAllocator.html:57:1 (SparseLuAllocator.Rd:16): Warning: missing </ul> before </div>
SparseQrAllocator.html:57:1 (SparseQrAllocator.Rd:16): Warning: missing </ul> before </div>
SvdAllocator.html:58:1 (SvdAllocator.Rd:16): Warning: missing </ul> before </div>
TransposeAllocator.html:58:1 (TransposeAllocator.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Ei-ji Nakama <nakama@ki.rim.or.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junji",
                      family = "NAKANO",
                      role = "aut",
                      email = "nakanoj@ism.ac.jp"),
               person(given = "Ei-ji",
                      family = "Nakama",
                      role = c("aut", "cre"),
                      email = "nakama@ki.rim.or.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘RHRVEasy.R’ ‘easyStatsFunctions.R’
Found the following HTML validation problems:
SaveHRVIndices.html:62:1 (SaveHRVIndices.Rd:22): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check.html:46:1 (check.Rd:10): Warning: missing </ul> before </div>
check_for_cran.html:46:1 (check_for_cran.Rd:10): Warning: missing </ul> before </div>
check_shortcuts.html:72:1 (check_shortcuts.Rd:49): Warning: missing </ul> before </div>
get_check.html:46:1 (get_check.Rd:10): Warning: missing </ul> before </div>
last_check.html:46:1 (last_check.Rd:10): Warning: missing </ul> before </div>
list_my_checks.html:46:1 (list_my_checks.Rd:10): Warning: missing </ul> before </div>
list_package_checks.html:46:1 (list_package_checks.Rd:10): Warning: missing </ul> before </div>
list_validated_emails.html:46:1 (list_validated_emails.Rd:10): Warning: missing </ul> before </div>
local_check_linux.html:46:1 (local_check_linux.Rd:10): Warning: missing </ul> before </div>
local_check_linux_images.html:46:1 (local_check_linux_images.Rd:10): Warning: missing </ul> before </div>
platforms.html:46:1 (platforms.Rd:10): Warning: missing </ul> before </div>
rhub-package.html:328:1 (rhub-package.Rd:261): Warning: missing </ul> before </div>
rhub_doctor.html:49:1 (rhub_doctor.Rd:12): Warning: missing </ul> before </div>
rhubv2.html:205:1 (rhubv2.Rd:129): Warning: missing </ul> before </div>
validate_email.html:46:1 (validate_email.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "LI",
                      role = c("aut", "cre"),
                      email = "ynaulx@gmail.com"),
               person(given = "Linna",
                      family = "MA",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiang",
                    family = "LI",
                    role = c("aut", "cre"),
                    email = "ynaulx@gmail.com")
as necessary.
Found the following HTML validation problems:
col_renamer.html:60:1 (col_renamer.Rd:18): Warning: missing </ul> before </div>
label_sirs.html:88:1 (label_sirs.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Steffen Moritz <steffen.moritz10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
dot-onAttach.html:46:1 (dot-onAttach.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Xinyuan Fan <fxy22@mails.tsinghua.edu.cn>’

The Description field contains
  and Wu (2024) <arXiv:2403.00600>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) iex.chart.Rd:23: Lost braces; missing escapes or markup?
    23 | r takes only of of the values accepted IN API request. {"5y", "2y", "1y", "ytd", "6m", "3m", "1m", "1d"}
       |                                                        ^
Maintainer: ‘Kean Ming Tan <ktan@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kean", "Ming"),
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "ktan@umn.edu")
as necessary.

The Description field contains
  Journal of the Royal Statistical Society: Series B. <arXiv:1604.08697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pavel", "V."),
                      family = "Moskalev",
                      role = c("aut", "cre"),
                      email = "moskalefff@gmail.com"),
               person(given = c("Alexey", "G."),
                      family = "Bukhovets",
                      role = "aut"),
               person(given = c("Tatyana", "Ya."),
                      family = "Biruchinskay",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
req_figma_template.html:70:1 (req_figma_template.Rd:28): Warning: missing </ul> before </div>
request_figma.html:57:1 (request_figma.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
convert_to_local_time.html:52:1 (convert_to_local_time.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Joel Carlson <jnkcarlson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joel",
                    family = "Carlson",
                    role = c("aut", "cre"),
                    email = "jnkcarlson@gmail.com")
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
File ‘RInside/libs/RInside.so’:
  Found ‘srand’, possibly from ‘srand’ (C)
    Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
  Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
    ‘R_DefParams’, ‘R_ReplDLLinit’, ‘R_RunExitFinalizers’,
    ‘R_SetParams’, ‘R_SignalHandlers’, ‘R_TempDir’, ‘Rf_endEmbeddedR’,
    ‘Rf_initEmbeddedR’, ‘run_Rmainloop’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘population_utils.R’
Found the following HTML validation problems:
helpers.html:144:1 (helpers.Rd:75): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.iptw_result.html:51:1 (print.iptw_result.Rd:12): Warning: missing </ul> before </div>
print.riskdiff_iptw_result.html:51:1 (print.riskdiff_iptw_result.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
parse_dcf_dependencies.html:46:1 (parse_dcf_dependencies.Rd:10): Warning: missing </ul> before </div>
remove_base_packages.html:46:1 (remove_base_packages.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  parity portfolios. <arXiv:1311.4057>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) riskParityPortfolio.Rd:163: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:164: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:165: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:167: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:168: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:169: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:170: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) riskPredict.Rd:38: Lost braces
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       | ^
checkRd: (-1) riskPredict.Rd:38: Lost braces
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       |     ^
checkRd: (-1) riskPredict.Rd:38: Lost braces; missing escapes or markup?
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       |             ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       | ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |     ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces; missing escapes or markup?
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |             ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |                      ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces; missing escapes or markup?
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |                              ^
Maintainer: ‘Saralees Nadarajah <mbbsssn2@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "mbbsssn2@manchester.ac.uk"),
               person(given = "Stephen",
                      family = "Chan",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
risk_mod_random_start.html:102:1 (risk_mod_random_start.Rd:46): Warning: missing </ul> before </div>
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Found the following HTML validation problems:
scale.DesignOptions.html:55:1 (scale.DesignOptions.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Gregory Pasternack <gpast@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Pasternack",
                      role = c("aut", "cre"),
                      email = "gpast@ucdavis.edu"),
               person(given = "Rafaeli",
                      family = "Arroyo",
                      role = "aut",
                      email = "rtoarroyo@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plotdensity.R’
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Maintainer: ‘Aleksander Mendyk <mfmendyk@cyf-kr.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aleksander",
                      family = "Mendyk",
                      role = c("aut", "cre"),
                      email = "mfmendyk@cyf-kr.edu.pl"),
               person(given = c("with", "contributions", "from", "Sebastian"),
                      family = "Polak.",
                      role = "aut",
                      email = "mfpolak@@cyf-kr.edu.pl"))
as necessary.
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                             ^
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                                                                   ^
Maintainer: ‘Gabriela Cohen-Freue <gcohen@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriela",
                      family = "Cohen-Freue",
                      role = c("aut", "cre"),
                      email = "gcohen@stat.ubc.ca"),
               person(given = "Davor",
                      family = "Cubranic",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "B."),
                      family = "Kaufmann",
                      role = "aut"),
               person(given = "R.H.",
                      family = "Zamar",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jeroen Ooms <jeroen@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeroen",
                      family = "Ooms",
                      role = c("aut", "cre"),
                      email = "jeroen@berkeley.edu"),
               person(given = "Forbes",
                      family = "Lindesay",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
global_quiet_param.html:46:1 (global_quiet_param.Rd:10): Warning: missing </ul> before </div>
java_env_set_rprofile.html:50:1 (java_env_set_rprofile.Rd:12): Warning: missing </ul> before </div>
java_env_set_session.html:46:1 (java_env_set_session.Rd:10): Warning: missing </ul> before </div>
rje_envvar_exists.html:48:1 (rje_envvar_exists.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "simon.urbanek@r-project.org")
as necessary.

Package installs .java files.
Package has FOSS license, installs .class/.jar but has no 'java' directory.
Non-standard file/directory found at top level:
  ‘jri’
Found the following possibly unsafe calls:
File ‘rJava/R/import.R’:
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File ‘rJava/R/jinit.R’:
  unlockBinding(x, .env)
  unlockBinding(x, pe)
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  Found ‘_exit’, possibly from ‘_exit’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)
File ‘rJava/libs/rJava.so’:
  Found non-API calls to R: ‘EXTPTR_PROT’, ‘EXTPTR_PTR’,
    ‘R_CStackLimit’, ‘R_CStackStart’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
rJava-internal.html:141:1 (rJava-internal.Rd:78): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
License stub is invalid DCF.
Found the following HTML validation problems:
setProviderCredentials.html:54:1 (setProviderCredentials.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Carlos Prieto <cprietos@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlos",
                      family = "Prieto",
                      role = c("aut", "cre"),
                      email = "cprietos@usal.es"),
               person(given = "David",
                      family = "Barrios",
                      role = "aut",
                      email = "metal@usal.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aaron Schumacher <ajschumacher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Schumacher",
                      role = c("aut", "cre"),
                      email = "ajschumacher@gmail.com"),
               person(given = "Håkon",
                      family = "Malmedal",
                      role = "aut"),
               person(given = "Måns",
                      family = "Magnusson",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
id.html:52:1 (id.Rd:15): Warning: missing </ul> before </div>
status.html:52:1 (status.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rjournal_website.html:50:1 (rjournal_website.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Shruti Gupta <shrutigupta34@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shruti",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "shrutigupta34@gmail.com"),
               person(given = "Coda",
                      family = "Hale"),
               person(given = "Yammer",
                      family = "Inc.",
                      role = c("ctb", "cph")))
as necessary.
Found the following HTML validation problems:
writeDatFromDataframes.html:59:1 (writeDatFromDataframes.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Mutua Kilai <kilaimutua@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mutua",
                    family = "Kilai",
                    role = c("aut", "cre"),
                    email = "kilaimutua@gmail.com")
as necessary.
Maintainer: ‘Halaleh Kamari <halaleh.kamari@univ-evry.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Halaleh",
                    family = "Kamari",
                    role = c("aut", "cre"),
                    email = "halaleh.kamari@univ-evry.fr")
as necessary.

The Description field contains
  H., Huet, S. and Taupin, M.-L. (2019) <arXiv:1905.13695>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Titus K Rotich <rktitus@uoeld.ac.ke>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Titus", "K"),
                    family = "Rotich",
                    role = c("aut", "cre"),
                    email = "rktitus@uoeld.ac.ke")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘higher_order_metadata.R’
Found the following HTML validation problems:
pipe.html:44:1 (pipe.Rd:9): Warning: missing </ul> before </div>
Found the following HTML validation problems:
KorAPCorpusStats-class.html:47:1 (KorAPCorpusStats-class.Rd:12): Warning: missing </ul> before </div>
KorAPQuery-class.html:74:1 (KorAPQuery-class.Rd:38): Warning: missing </ul> before </div>
apiCall-KorAPConnection-method.html:66:1 (apiCall-KorAPConnection-method.Rd:24): Warning: missing </ul> before </div>
initialize-KorAPQuery-method.html:105:1 (initialize-KorAPQuery-method.Rd:46): Warning: missing </ul> before </div>
log_info.html:52:1 (log_info.Rd:12): Warning: missing </ul> before </div>
show-KorAPConnection-method.html:47:1 (show-KorAPConnection-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Aldo Marchetto <aldo.marchetto@cnr.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aldo",
                    family = "Marchetto",
                    role = c("aut", "cre"),
                    email = "aldo.marchetto@cnr.it")
as necessary.
Maintainer: ‘Md Ashad Alam <malam@tulane.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Md", "Ashad"),
                    family = "Alam",
                    role = c("aut", "cre"),
                    email = "malam@tulane.edu")
as necessary.
Maintainer: ‘Dennis Boos <boos@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dennis", "D."),
                      family = "Boos",
                      role = "aut"),
               person(given = "Douglas",
                      family = "Nychka",
                      role = "aut"),
               person(given = "Dennis",
                      family = "Boos",
                      role = "cre",
                      email = "boos@ncsu.edu"))
as necessary.
checkRd: (-1) Exponential.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) Gamma.Rd:80: Escaped LaTeX specials: \&
checkRd: (-1) college.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) college.Rd:15: Escaped LaTeX specials: \$
Maintainer: ‘Luke Winslow <lawinslow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Winslow",
                      role = c("aut", "cre"),
                      email = "lawinslow@gmail.com"),
               person(given = "Jordan",
                      family = "Read",
                      role = "aut"),
               person(given = "Richard",
                      family = "Woolway",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Brentrup",
                      role = "aut"),
               person(given = "Taylor",
                      family = "Leach",
                      role = "aut"),
               person(given = "Jake",
                      family = "Zwart",
                      role = "aut"),
               person(given = "Sam",
                      family = "Albers",
                      role = "aut"),
               person(given = "Doug",
                      family = "Collinge",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
get.datetime.html:50:1 (get.datetime.Rd:12): Warning: missing </ul> before </div>
File ‘rlang/libs/rlang.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘OBJECT’, ‘PRENV’, ‘PRVALUE’,
    ‘R_PromiseExpr’, ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’, ‘SETLENGTH’,
    ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FORMALS’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘SET_TYPEOF’, ‘XTRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
check.html:68:1 (check.Rd:15): Warning: missing </ul> before </div>
las_specification_tools.html:171:1 (las_specification_tools.Rd:180): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chartEvent.Rd: App
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
listen.html:59:1 (listen.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Patricia Conde-Clemente <patricia.condeclemente@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patricia",
                      family = "Conde-Clemente",
                      role = c("aut", "cre"),
                      email = "patricia.condeclemente@gmail.com"),
               person(given = c("Jose", "M."),
                      family = "Alonso",
                      role = "aut"),
               person(given = "Gracian",
                      family = "Trivino",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wei-Min Wang <wmwang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei-Min",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wmwang@gmail.com")
as necessary.
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Found the following HTML validation problems:
printspl.html:63:1 (printspl.Rd:24): Warning: missing </ul> before </div>
spLayer.SpatialGridDataFrame.html:79:1 (spLayer.SpatialGridDataFrame.Rd:30): Warning: missing </ul> before </div>
spLayer.SpatialLines.html:104:1 (spLayer.SpatialLines.Rd:45): Warning: missing </ul> before </div>
spLayer.SpatialPoints.html:145:1 (spLayer.SpatialPoints.Rd:64): Warning: missing </ul> before </div>
spLayer.SpatialPolygons.html:124:1 (spLayer.SpatialPolygons.Rd:57): Warning: missing </ul> before </div>
spLayer.default.html:51:1 (spLayer.default.Rd:12): Warning: missing </ul> before </div>
spLayerControl.html:113:1 (spLayerControl.Rd:51): Warning: missing </ul> before </div>
summarymaplayer.html:69:1 (summarymaplayer.Rd:30): Warning: missing </ul> before </div>
uiJS.html:51:1 (uiJS.Rd:12): Warning: missing </ul> before </div>
writeMap.html:110:1 (writeMap.Rd:53): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.rle.html:52:1 (as.rle.Rd:16): Warning: missing </ul> before </div>
compress.html:50:1 (compress.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
EscalationRule.html:285:1 (EscalationRule.Rd:165): Warning: missing </ul> before </div>
EscalationRule.html:130:1 (EscalationRule.Rd:72): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:136:1 (EscalationRule.Rd:76): Warning: <h5> anchor "Arguments" already defined
EscalationRule.html:175:1 (EscalationRule.Rd:101): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:181:1 (EscalationRule.Rd:105): Warning: <h5> anchor "Arguments" already defined
EscalationRule.html:194:1 (EscalationRule.Rd:112): Warning: <h5> anchor "Returns" already defined
EscalationRule.html:211:1 (EscalationRule.Rd:121): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:217:1 (EscalationRule.Rd:125): Warning: <h5> anchor "Arguments" already defined
EscalationRule.html:246:1 (EscalationRule.Rd:144): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:262:1 (EscalationRule.Rd:154): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:268:1 (EscalationRule.Rd:158): Warning: <h5> anchor "Arguments" already defined
clean_python_settings.html:46:1 (clean_python_settings.Rd:10): Warning: missing </ul> before </div>
setup_python.html:47:1 (setup_python.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Otryakhin and Podolskij (2018) <arXiv:1802.06373>, and also different
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
openOutput.html:51:1 (openOutput.Rd:12): Warning: missing </ul> before </div>
skipFeatureList.html:50:1 (skipFeatureList.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Rlgt-package.html:127:1 (Rlgt-package.Rd:79): Warning: <h4> anchor "Model-Equations" already defined
Rlgt-package.html:177:1 (Rlgt-package.Rd:110): Warning: <h4> anchor "Model-Equations" already defined
Rlgt-package.html:200:1 (Rlgt-package.Rd:120): Warning: <h4> anchor "Additional-Notations" already defined
Rlgt-package.html:213:1 (Rlgt-package.Rd:127): Warning: <h4> anchor "Additional-Parameters" already defined
lgt.html:51:1 (lgt.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Jouni Helske <jouni.helske@iki.fi>’

Found the following (possibly) invalid file URI:
  URI: https//cranlogs.r-pkg.org:443/badges/Rlibeemd
    From: README.md
Found the following HTML validation problems:
print.factorGSEA.html:51:1 (print.factorGSEA.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael Piccirilli <michael.r.piccirilli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Piccirilli",
                    role = c("aut", "cre"),
                    email = "michael.r.piccirilli@gmail.com")
as necessary.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Found the following HTML validation problems:
args_env.html:50:1 (args_env.Rd:12): Warning: missing </ul> before </div>
args_list.html:46:1 (args_list.Rd:10): Warning: missing </ul> before </div>
callwith.html:62:1 (callwith.Rd:18): Warning: missing </ul> before </div>
contains.html:50:1 (contains.Rd:12): Warning: missing </ul> before </div>
dot-evalwith.html:48:1 (dot-evalwith.Rd:11): Warning: missing </ul> before </div>
dots.html:46:1 (dots.Rd:10): Warning: missing </ul> before </div>
list.apply.html:54:1 (list.apply.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘You-Gan Wang <you-gan.wang@qut.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "You-Gan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "you-gan.wang@qut.edu.au"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"),
               person(given = "Aurelien",
                      family = "Callens",
                      role = "aut"),
               person(given = "Na",
                      family = "Wang.",
                      role = "aut"))
as necessary.
Maintainer: ‘Yusuf Bilgic <bilgic@geneseo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yusuf",
                      family = "Bilgic",
                      role = c("aut", "cre"),
                      email = "bilgic@geneseo.edu"),
               person(given = "Herb",
                      family = "Susmann",
                      role = "aut"),
               person(given = "Joseph",
                      family = "McKean",
                      role = "aut"))
as necessary.
Maintainer: ‘Yingsong Hu <yingsonghu@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yingsong",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "yingsonghu@hotmail.com"),
               person(given = "Wayne",
                      family = "Murray",
                      role = "aut"),
               person(given = "Yin",
                      family = "Shan",
                      role = "aut"),
               person(family = "Australia.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sunny Kumar <sunny.nitie14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sunny",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "sunny.nitie14@gmail.com")
as necessary.
Found the following HTML validation problems:
AllocationRule.html:281:1 (AllocationRule.Rd:161): Warning: missing </ul> before </div>
AllocationRule.html:129:1 (AllocationRule.Rd:71): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:135:1 (AllocationRule.Rd:75): Warning: <h5> anchor "Arguments" already defined
AllocationRule.html:171:1 (AllocationRule.Rd:97): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:177:1 (AllocationRule.Rd:101): Warning: <h5> anchor "Arguments" already defined
AllocationRule.html:190:1 (AllocationRule.Rd:108): Warning: <h5> anchor "Returns" already defined
AllocationRule.html:207:1 (AllocationRule.Rd:117): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:213:1 (AllocationRule.Rd:121): Warning: <h5> anchor "Arguments" already defined
AllocationRule.html:242:1 (AllocationRule.Rd:140): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:258:1 (AllocationRule.Rd:150): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:264:1 (AllocationRule.Rd:154): Warning: <h5> anchor "Arguments" already defined
clean_python_settings.html:46:1 (clean_python_settings.Rd:10): Warning: missing </ul> before </div>
setup_python.html:47:1 (setup_python.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Fabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tong",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "hetong007@gmail.com"),
               person(given = "Oliver",
                      family = "Keyes",
                      role = "ctb"))
as necessary.

The Description field contains
  in Chinese (http://www.ltp-cloud.com/).
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
checkRd: (-1) ms_simplify.Rd:36: Lost braces
    36 | \url{https://github.com/mbloch/mapshaper/wiki/Simplification-Tips}{link}
       |                                                                   ^
Found the following HTML validation problems:
as_sf.html:57:1 (as_sf.Rd:18): Warning: missing </ul> before </div>
mz_contours.html:52:1 (mz_contours.Rd:13): Warning: missing </ul> before </div>
mz_date_time.html:52:1 (mz_date_time.Rd:12): Warning: missing </ul> before </div>
mz_place.html:71:1 (mz_place.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
html-dependencies.html:93:1 (html-dependencies.Rd:52): Warning: missing </ul> before </div>
html_notebook_metadata.html:48:1 (html_notebook_metadata.Rd:10): Warning: missing </ul> before </div>
latex-dependencies.html:55:1 (latex-dependencies.Rd:15): Warning: missing </ul> before </div>
latex_dependency.html:54:1 (latex_dependency.Rd:14): Warning: missing </ul> before </div>
shiny_prerendered_chunk.html:56:1 (shiny_prerendered_chunk.Rd:15): Warning: missing </ul> before </div>
shiny_prerendered_clean.html:47:1 (shiny_prerendered_clean.Rd:10): Warning: missing </ul> before </div>
shiny_prerendered_server_start_code.html:46:1 (shiny_prerendered_server_start_code.Rd:10): Warning: missing </ul> before </div>
yaml_front_matter.html:50:1 (yaml_front_matter.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
months_f.html:50:1 (months_f.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Marshall Brown <mdbrown@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marshall",
                    family = "Brown",
                    role = c("aut", "cre"),
                    email = "mdbrown@fredhutch.org")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘replace_doi.R’
Found the following HTML validation problems:
pilltabs_print.html:54:1 (pilltabs_print.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Mark Peterson <mark.phillip.peterson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Peterson",
                    role = c("aut", "cre"),
                    email = "mark.phillip.peterson@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘model-table.R’
Found the following HTML validation problems:
construct_table_from_formulas.html:46:1 (construct_table_from_formulas.Rd:10): Warning: missing </ul> before </div>
construct_table_from_models.html:48:1 (construct_table_from_models.Rd:11): Warning: missing </ul> before </div>
model_table_reconstructable.html:50:1 (model_table_reconstructable.Rd:12): Warning: missing </ul> before </div>
validate_model_table.html:46:1 (validate_model_table.Rd:10): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Johan Larsson <johanlarsson@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Johann R. Kleinbub <johann.kleinbub@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Johann", "R."),
                      family = "Kleinbub",
                      role = c("aut", "cre"),
                      email = "johann.kleinbub@gmail.com"),
               person(given = "Fabian",
                      family = "Ramseyer",
                      role = "aut"))
as necessary.
Maintainer: ‘Junhewk Kim <junhewk.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhewk",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "junhewk.kim@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ci.Rd: lavaan
  mbco.Rd: mxOption
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  <arXiv:2306.03883>). These procedures enable us to verify the overall
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Ryan M. Hope <rmh3093@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ryan", "M."),
                    family = "Hope",
                    role = c("aut", "cre"),
                    email = "rmh3093@gmail.com")
as necessary.
File ‘Rmixmod/libs/Rmixmod.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Object: ‘mixmod.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following HTML validation problems:
ellipse.html:54:1 (ellipse.Rd:14): Warning: missing </ul> before </div>
extract-methods.html:121:1 (extract-methods.Rd:101): Warning: missing </ul> before </div>
mixmodLearn.html:46:1 (mixmodLearn.Rd:10): Warning: missing </ul> before </div>
mixmodXmlInput.html:46:1 (mixmodXmlInput.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) histMisclassif.Rd:22: Lost braces
    22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
       |                 ^
checkRd: (-1) histMisclassif.Rd:22: Lost braces
    22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
       |                    ^
Maintainer: ‘Robert M. Kirkpatrick <rkirkpatrick2@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "M."),
                    family = "Kirkpatrick",
                    role = c("aut", "cre"),
                    email = "rkirkpatrick2@vcu.edu")
as necessary.
Maintainer: ‘Herdiantri Sufriyana <herdi@nycu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rmlnomogram/blob/master/doc/ml_nomogram_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "file"),
                      family = "AUTHORS",
                      role = "aut"),
               person(given = "Jan",
                      family = "Wijffels",
                      role = "cre",
                      email = "jwijffels@bnosac.be"))
as necessary.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘decrypt.Rd’ ‘encrypt.Rd’ ‘encrypt_raw.Rd’
checkRd: (-1) nsgaControl.Rd:20-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:28-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:36-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Henrik A. Friberg <haf@mosek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "MOSEK",
                      family = "ApS",
                      role = "aut"),
               person(given = c("Henrik", "A."),
                      family = "Friberg",
                      role = "cre",
                      email = "haf@mosek.com"))
as necessary.
Found the following calls to attach():
File ‘Rmosek/R/builder.R’:
  attach(builderenv, pos, name, warn.conflicts)
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
ai_ratio.html:55:1 (ai_ratio.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
integrateR.html:149:1 (integrateR.Rd:85): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Priyam Das <pdas@ncsu.edu>’

The Description field contains
  Described in the paper : Das (2016) <arXiv:1604.08616> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xu Qin <xuqin@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@uchicago.edu"),
               person(given = "Guanglei",
                      family = "Hong",
                      role = "aut"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Kentaro Ueno <ueno_kentaro@kuhp.kyoto-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kentaro",
                    family = "Ueno",
                    role = c("aut", "cre"),
                    email = "ueno_kentaro@kuhp.kyoto-u.ac.jp")
as necessary.
Maintainer: ‘Uwe Menzel <uwemenzel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Uwe",
                    family = "Menzel",
                    role = c("aut", "cre"),
                    email = "uwemenzel@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Iain", "M."),
                      family = "Johnstone",
                      role = "aut"),
               person(given = "Zongming",
                      family = "Ma",
                      role = "aut"),
               person(given = c("Patrick", "O."),
                      family = "Perry",
                      role = "aut"),
               person(given = "Morteza",
                      family = "Shahram",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/evanbiederstedt/RMTstat
which should likely be
  https://github.com/evanbiederstedt/RMTstat/issues
instead.
Maintainer: ‘Chenyu Ren <chenyu.ren@connect.polyu.hk>’

The Description field contains
  Ting Li, Zhongyuan Lyu, Chenyu Ren, Dong Xia (2023) <arXiv:2302.04437>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Rmumps__del_ptr.html:47:1 (Rmumps__del_ptr.Rd:10): Warning: missing </ul> before </div>
Rmumps__set_mat_ptr.html:51:1 (Rmumps__set_mat_ptr.Rd:12): Warning: missing </ul> before </div>
Rmumps__set_permutation.html:51:1 (Rmumps__set_permutation.Rd:12): Warning: missing </ul> before </div>
Rmumps__solveptr.html:59:1 (Rmumps__solveptr.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mvl_verify.html:47:1 (mvl_verify.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Sara Viviani <sara.viviani@yahoo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlo",
                      family = "Cafiero",
                      role = "aut"),
               person(given = "Sara",
                      family = "Viviani",
                      role = c("aut", "cre"),
                      email = "sara.viviani@yahoo.it"),
               person(given = "Mark",
                      family = "Nord",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RM.weights-package.Rd’:
    \keyword{ Conditional maximum likelihood, Rasch mo [TRUNCATED]
Found the following HTML validation problems:
dbWriteTable.html:151:1 (dbWriteTable.Rd:86): Warning: missing </ul> before </div>
make.db.names-MySQLConnection-character-method.html:105:1 (make.db.names-MySQLConnection-character-method.Rd:53): Warning: missing </ul> before </div>
checkRd: (-1) myTarGetClientList.Rd:33: Lost braces
    33 | {MyTarget API Documenation}{https://target.my.com/doc/api/detailed/#resource_agency_clients}
       |                            ^
Found the following HTML validation problems:
sampleChimeras.html:47:1 (sampleChimeras.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
all_numeric.html:50:1 (all_numeric.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
nassqs_fields.html:48:1 (nassqs_fields.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) rncl.Rd:53-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:59-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:65-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:73-78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:80-84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:86-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:92-93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:101-102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:104-105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:107-110: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:112-115: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:117-119: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:121-124: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kam Hamidieh <khamidieh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kam",
                    family = "Hamidieh",
                    role = c("aut", "cre"),
                    email = "khamidieh@gmail.com")
as necessary.
Maintainer: ‘Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NlistServersInCategory.Rd:11: Escaped LaTeX specials: \_
Maintainer: ‘Jan C. Thiele <rnetlogo@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jan", "C."),
                    family = "Thiele",
                    role = c("aut", "cre"),
                    email = "rnetlogo@gmx.de")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:338:1 (inst/NEWS.Rd:305): Warning: missing </ul> before </div>
NEWS.html:58:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:79:1 (inst/NEWS.Rd:83): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:93:1 (inst/NEWS.Rd:91): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:111:1 (inst/NEWS.Rd:105): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:122:1 (inst/NEWS.Rd:112): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:137:1 (inst/NEWS.Rd:126): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:155:1 (inst/NEWS.Rd:146): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:169:1 (inst/NEWS.Rd:156): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:193:1 (inst/NEWS.Rd:176): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:208:1 (inst/NEWS.Rd:195): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:236:1 (inst/NEWS.Rd:215): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:254:1 (inst/NEWS.Rd:234): Warning: <h4> anchor "NEW-FUNCTIONS" already defined
NEWS.html:265:1 (inst/NEWS.Rd:242): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:295:1 (inst/NEWS.Rd:266): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:306:1 (inst/NEWS.Rd:276): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:324:1 (inst/NEWS.Rd:296): Warning: <h4> anchor "BUG-FIXES" already defined
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kasper", "Welbers", "&", "Wouter"),
                      family = "van Atteveldt",
                      role = "aut"),
               person(given = "Kasper",
                      family = "Welbers",
                      role = "cre",
                      email = "kasperwelbers@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compare_documents.Rd’ ‘term_char_sim.Rd’ ‘term_union.Rd’
checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
add_characters.html:62:1 (add_characters.Rd:22): Warning: missing </ul> before </div>
lcapply.html:51:1 (lcapply.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ruizhe Chen <rchen18@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hesen",
                      family = "Li",
                      role = "aut"),
               person(given = "Ruizhe",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "rchen18@uic.edu"),
               person(given = "Hai",
                      family = "Nguyen",
                      role = "aut"),
               person(given = "Yu-Che",
                      family = "Chung",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
process_file_name.html:56:1 (process_file_name.Rd:15): Warning: missing </ul> before </div>
validate_year.html:54:1 (validate_year.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Found the following HTML validation problems:
detectCores.html:46:1 (detectCores.Rd:10): Warning: missing </ul> before </div>
getMergedDataset.html:57:1 (getMergedDataset.Rd:17): Warning: missing </ul> before </div>
ggplotClusters.html:52:1 (ggplotClusters.Rd:13): Warning: missing </ul> before </div>
ggplotCriterion.html:52:1 (ggplotCriterion.Rd:12): Warning: missing </ul> before </div>
ggplotLoadings.html:91:1 (ggplotLoadings.Rd:36): Warning: missing </ul> before </div>
ggplotPlotly.html:58:1 (ggplotPlotly.Rd:16): Warning: missing </ul> before </div>
ggplotScores.html:94:1 (ggplotScores.Rd:39): Warning: missing </ul> before </div>
plotClusters.html:64:1 (plotClusters.Rd:22): Warning: missing </ul> before </div>
plotCriterion.html:52:1 (plotCriterion.Rd:12): Warning: missing </ul> before </div>
plotLoadings.html:101:1 (plotLoadings.Rd:42): Warning: missing </ul> before </div>
plotScores.html:96:1 (plotScores.Rd:41): Warning: missing </ul> before </div>
setPPMbounds.html:50:1 (setPPMbounds.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
NEWS.html:47:79 (NEWS.Rd:17): Warning: missing </p> before <a>
NEWS.html:47:5 (NEWS.Rd:17): Warning: missing </a> before <a>
NEWS.html:47:202 (NEWS.Rd:17): Warning: inserting implicit <p>
NEWS.html:47:206 (NEWS.Rd:17): Warning: discarding unexpected </a>
NEWS.html:47:79 (NEWS.Rd:17): Warning: trimming empty <p>
NEWS.html:47:202 (NEWS.Rd:17): Warning: trimming empty <p>
Maintainer: ‘Bastiaan Quast <bquast@gmail.com>’

The Description field contains
  <arXiv:1412.3555>) and vanilla RNN.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.nrfa_api.html:51:1 (print.nrfa_api.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jongbin Jung <me@jongbin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jongbin",
                    family = "Jung",
                    role = c("aut", "cre"),
                    email = "me@jongbin.com")
as necessary.

The Description field contains
  implemented in Jung et al. (2017) <arXiv:1702.04690> based on Rosenbaum
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘projectRoads.Rd’
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  package. See Aleman-Gomez et al. (2021) <arXiv:2103.08874> for details
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) fData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:28-29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:45-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:55-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:59-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:66-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Gentry",
                      role = "aut",
                      email = "geoffjentry@gmail.com"),
               person(given = c("Duncan", "Temple"),
                      family = "Lang",
                      role = "aut",
                      email = "duncan@r-project.org"),
               person(given = "Pablo",
                      family = "Barbera",
                      role = "cre",
                      email = "pablo.barbera@nyu.edu"))
as necessary.
Maintainer: ‘Paul Smirnov <s.paul@mail.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Smirnov",
                    role = c("aut", "cre"),
                    email = "s.paul@mail.ru")
as necessary.
File ‘robfilter/libs/robfilter.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Ufuk Beyaztas <ufukbeyaztas@gmail.com>’

The Description field contains
  <arXiv:2111.01238> and Beyaztas, U., and Shang, H. L. (2022)
  <arXiv:2203.05065>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Found the following HTML validation problems:
h_get_erb.html:62:1 (h_get_erb.Rd:18): Warning: missing </ul> before </div>
h_interaction.html:50:1 (h_interaction.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Joseph Blubaugh <jestonblu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Blubaugh",
                    role = c("aut", "cre"),
                    email = "jestonblu@gmail.com")
as necessary.
Found the following HTML validation problems:
createITPSplineResult.html:85:1 (createITPSplineResult.Rd:35): Warning: missing </ul> before </div>
rewireCompl.html:84:1 (rewireCompl.Rd:35): Warning: missing </ul> before </div>
rewireOnl.html:50:1 (rewireOnl.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Grose <dan.grose@lancaster.ac.uk>’

The Description field contains
  (2014) <arXiv:1204.3358> and Agamennoni et al. (2018)
  of Ruckdeschel et al. (2014) <arXiv:1204.3358>, as well as the
  <arXiv:2007.03238>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.html:67:1 (print.Rd:22): Warning: missing </ul> before </div>
summary.html:67:1 (summary.Rd:22): Warning: missing </ul> before </div>
Package required but not available: ‘beadarray’

Package suggested but not available for checking: ‘beadarrayExampleData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wennan Chang <wnchang@iu.edu>’

The Description field contains
  <arXiv:2005.11599>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
CTLERob-methods.html:66:1 (CTLERob-methods.Rd:24): Warning: missing </ul> before </div>
blockMap.html:46:1 (blockMap.Rd:10): Warning: missing </ul> before </div>
compPlot.html:66:1 (compPlot.Rd:20): Warning: missing </ul> before </div>
orderedLines.html:54:1 (orderedLines.Rd:14): Warning: missing </ul> before </div>
plot_CTLE-methods.html:61:1 (plot_CTLE-methods.Rd:21): Warning: missing </ul> before </div>
plot_mixtureReg.html:72:1 (plot_mixtureReg.Rd:24): Warning: missing </ul> before </div>
plot_mixtureRegList.html:58:1 (plot_mixtureRegList.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.list.robotstxt_text.html:51:1 (as.list.robotstxt_text.Rd:12): Warning: missing </ul> before </div>
fix_url.html:46:1 (fix_url.Rd:10): Warning: missing </ul> before </div>
get_robotstxt.html:132:1 (get_robotstxt.Rd:66): Warning: missing </ul> before </div>
get_robotstxts.html:136:1 (get_robotstxts.Rd:70): Warning: missing </ul> before </div>
guess_domain.html:46:1 (guess_domain.Rd:10): Warning: missing </ul> before </div>
is_suspect_robotstxt.html:46:1 (is_suspect_robotstxt.Rd:10): Warning: missing </ul> before </div>
is_valid_robotstxt.html:50:1 (is_valid_robotstxt.Rd:12): Warning: missing </ul> before </div>
named_list.html:46:1 (named_list.Rd:10): Warning: missing </ul> before </div>
null_to_defeault.html:50:1 (null_to_defeault.Rd:12): Warning: missing </ul> before </div>
paths_allowed.html:160:1 (paths_allowed.Rd:86): Warning: missing </ul> before </div>
paths_allowed_worker_spiderbar.html:62:1 (paths_allowed_worker_spiderbar.Rd:20): Warning: missing </ul> before </div>
print.robotstxt.html:51:1 (print.robotstxt.Rd:12): Warning: missing </ul> before </div>
print.robotstxt_text.html:51:1 (print.robotstxt_text.Rd:12): Warning: missing </ul> before </div>
remove_domain.html:46:1 (remove_domain.Rd:10): Warning: missing </ul> before </div>
rt_get_comments.html:46:1 (rt_get_comments.Rd:10): Warning: missing </ul> before </div>
rt_get_fields.html:54:1 (rt_get_fields.Rd:14): Warning: missing </ul> before </div>
rt_get_fields_worker.html:59:1 (rt_get_fields_worker.Rd:17): Warning: missing </ul> before </div>
rt_get_rtxt.html:47:1 (rt_get_rtxt.Rd:10): Warning: missing </ul> before </div>
rt_get_useragent.html:46:1 (rt_get_useragent.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Aditya Mishra <amishra@flatironinstitute.org>’

The Description field contains
  <arXiv:1909.04990>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
robservable-shiny.html:68:1 (robservable-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Jakob Raymaekers <j.raymaekers@maastrichtuniversity.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jakob",
                    family = "Raymaekers",
                    role = c("aut", "cre"),
                    email = "j.raymaekers@maastrichtuniversity.nl")
as necessary.

The Description field contains
  F. (2022) <arXiv:2202.08060>.  All algorithms run in quasilinear time.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) predict.robu.Rd:36-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:43-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:50-55: Lost braces in \itemize; meant \describe ?
Maintainer: ‘A. Randriamiharisoa <exelami@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alfio",
                      family = "Marazzi",
                      role = "aut",
                      email = "Alfio.Marazzi@unisante.ch"),
               person(given = "Jean-Luc",
                      family = "Muralti",
                      role = "aut"),
               person(given = "A.",
                      family = "Randriamiharisoa",
                      role = "cre",
                      email = "exelami@gmail.com"))
as necessary.
Maintainer: ‘Ray Bai <raybaistat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ray",
                    family = "Bai",
                    role = c("aut", "cre"),
                    email = "raybaistat@gmail.com")
as necessary.

The Description field contains
  (2020) <arXiv:2005.02930> for correcting and quantifying publication
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Erlis Ruli <erlisr@yahoo.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  by Ruli et al. (2017) <arXiv:1706.01752>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "Bouveyron", "&", "Stephane"),
                      family = "Girard",
                      role = "aut"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "cre",
                      email = "charles.bouveyron@gmail.com"))
as necessary.
Maintainer: ‘Chuan Hong <hong.chuan.hannah@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chuan",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "hong.chuan.hannah@gmail.com"),
               person(given = "Yong",
                      family = "Chen",
                      role = "aut"),
               person(given = "Yang",
                      family = "Ning",
                      role = "aut"),
               person(given = "Hao",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Zijian Guo <zijguo@stat.rutgers.edu>’

The Description field contains
  variables via TSHT('Guo et al.' (2016) <arXiv:1603.05224>) and
  SearchingSampling('Guo' (2021) <arXiv:2104.06911>), which are effective
  <arXiv:1609.06713>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Santiago I. Hurtado <santih@carina.fcaglp.unlp.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Santiago", "I."),
                    family = "Hurtado",
                    role = c("aut", "cre"),
                    email = "santih@carina.fcaglp.unlp.edu.ar")
as necessary.
Maintainer: ‘Youyi Fong <youyifong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Youyi",
                    family = "Fong",
                    role = c("aut", "cre"),
                    email = "youyifong@gmail.com")
as necessary.
Found the following HTML validation problems:
multinom.test.html:108:1 (multinom.test.Rd:46): Warning: missing </ul> before </div>
mw.mw.2.perm.html:93:1 (mw.mw.2.perm.Rd:39): Warning: missing </ul> before </div>
wmw.paired.replicates.test.html:108:1 (wmw.paired.replicates.test.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Maria del Carmen Calatrava Moreno <mc.calatrava.moreno@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "del", "Carmen", "Calatrava"),
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "mc.calatrava.moreno@gmail.com"),
               person(given = "Thomas",
                      family = "Auzinger",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
lmRob.fit.html:72:1 (lmRob.fit.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Ian M. Johnson <ijca2013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ian", "M."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "ijca2013@gmail.com")
as necessary.
Maintainer: ‘Claudio Agostinelli <claudio.agostinelli@unitn.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudio",
                      family = "Agostinelli",
                      role = c("aut", "cre"),
                      email = "claudio.agostinelli@unitn.it"),
               person(given = c("Victor", "J."),
                      family = "Yohai",
                      role = "aut",
                      email = "victoryohai@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Luke McGuinness <luke.mcguinness@bristol.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/mcguinlu/robvis
which should likely be
  https://github.com/mcguinlu/robvis/issues
instead.
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Maintainer: ‘Ben Sherwood <ben.sherwood@ku.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Sherwood",
                    role = c("aut", "cre"),
                    email = "ben.sherwood@ku.edu")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
ciAUC.html:52:1 (ciAUC.Rd:14): Warning: missing </ul> before </div>
ciROC.html:53:1 (ciROC.Rd:15): Warning: missing </ul> before </div>
gainstable.html:48:1 (gainstable.Rd:11): Warning: missing </ul> before </div>
ksplot.html:52:1 (ksplot.Rd:14): Warning: missing </ul> before </div>
measureit.html:48:1 (measureit.Rd:11): Warning: missing </ul> before </div>
checkRd: (-1) descriptiveTable.Rd:18: Lost braces
    18 | other object type that does not fail in code{model.frame(object)}.}
       |                                             ^
Maintainer: ‘Jeffrey R. Webber <jwebber@geo.umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "R."),
                    family = "Webber",
                    role = c("aut", "cre"),
                    email = "jwebber@geo.umass.edu")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rocNIT.Rd’:
    \keyword{Non-inferiority test, receiver operating  [TRUNCATED]
Maintainer: ‘Felix G.M. Ernst <felix.gm.ernst@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
checkRd: (-1) performance.Rd:35: Escaped LaTeX specials: \#
checkRd: (-1) performance.Rd:36: Escaped LaTeX specials: \# \# \#
checkRd: (-1) performance.Rd:37: Escaped LaTeX specials: \# \#
Found the following HTML validation problems:
poly.kernel.html:58:1 (poly.kernel.Rd:16): Warning: missing </ul> before </div>
radial.kernel.html:58:1 (radial.kernel.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dbGetInfo-ODBCConnection-method.html:51:1 (dbGetInfo-ODBCConnection-method.Rd:13): Warning: missing </ul> before </div>
dbListTables-ODBCConnection-method.html:47:1 (dbListTables-ODBCConnection-method.Rd:11): Warning: missing </ul> before </div>
dbRemoveTable-ODBCConnection-character-method.html:51:1 (dbRemoveTable-ODBCConnection-character-method.Rd:13): Warning: missing </ul> before </div>
odbc-query.html:75:1 (odbc-query.Rd:28): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ODEAdaptiveSolver-class.html:77:1 (ODEAdaptiveSolver-class.Rd:34): Warning: missing </ul> before </div>
getODE-method.html:50:1 (getODE-method.Rd:12): Warning: missing </ul> before </div>
getRateCounts-method.html:50:1 (getRateCounts-method.Rd:12): Warning: missing </ul> before </div>
getTolerance-method.html:50:1 (getTolerance-method.Rd:12): Warning: missing </ul> before </div>
importFromExamples.html:50:1 (importFromExamples.Rd:12): Warning: missing </ul> before </div>
setSolver-method.html:50:1 (setSolver-method.Rd:12): Warning: missing </ul> before </div>
showMethods2.html:46:1 (showMethods2.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  described in Centofanti et al. (2021) <arXiv:2112.10643>.  It allows
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rofanova.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:65:1 (inst/NEWS.Rd:29): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:87:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "New-features" already defined
NEWS.html:123:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:141:1 (inst/NEWS.Rd:72): Warning: <h4> anchor "New-features" already defined
NEWS.html:173:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:204:1 (inst/NEWS.Rd:108): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:233:1 (inst/NEWS.Rd:124): Warning: <h4> anchor "New-feature" already defined
NEWS.html:249:1 (inst/NEWS.Rd:133): Warning: <h4> anchor "Changes" already defined
NEWS.html:262:1 (inst/NEWS.Rd:140): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:289:1 (inst/NEWS.Rd:156): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:301:1 (inst/NEWS.Rd:162): Warning: <h4> anchor "New-features" already defined
NEWS.html:321:1 (inst/NEWS.Rd:174): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:353:1 (inst/NEWS.Rd:191): Warning: <h4> anchor "New-features" already defined
NEWS.html:370:1 (inst/NEWS.Rd:200): Warning: <h4> anchor "Bug-fixes" already defined
Maintainer: ‘Benjamin Schwendinger <benjaminschwe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Schwendinger",
                    role = c("aut", "cre"),
                    email = "benjaminschwe@gmail.com")
as necessary.
Found the following HTML validation problems:
control.html:280:1 (control.Rd:150): Warning: missing </ul> before </div>
Found the following HTML validation problems:
neos_control.html:124:1 (neos_control.Rd:62): Warning: missing </ul> before </div>
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_solve.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:28-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
ROI_constraint.html:81:1 (ROI_constraint.Rd:24): Warning: missing </ul> before </div>
ROI_options.html:53:1 (ROI_options.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
apply_filter_dimension.html:50:1 (apply_filter_dimension.Rd:12): Warning: missing </ul> before </div>
apply_select_dimension.html:50:1 (apply_select_dimension.Rd:12): Warning: missing </ul> before </div>
apply_select_fact.html:50:1 (apply_select_fact.Rd:12): Warning: missing </ul> before </div>
group_facts.html:46:1 (group_facts.Rd:10): Warning: missing </ul> before </div>
remove_all_measures_na.html:50:1 (remove_all_measures_na.Rd:12): Warning: missing </ul> before </div>
remove_duplicate_dimension_rows.html:48:1 (remove_duplicate_dimension_rows.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rollbar.configure.html:54:1 (rollbar.configure.Rd:14): Warning: missing </ul> before </div>
rollbar.critical.html:50:1 (rollbar.critical.Rd:12): Warning: missing </ul> before </div>
rollbar.debug.html:50:1 (rollbar.debug.Rd:12): Warning: missing </ul> before </div>
rollbar.error.html:50:1 (rollbar.error.Rd:12): Warning: missing </ul> before </div>
rollbar.warning.html:50:1 (rollbar.warning.Rd:12): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Siqi Zhang [ctb], Russell Goldenberg [ctb] (The JS library inst/resources/scrollama/scrollama.min.js)’
  Authors@R: ‘Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Siqi Zhang [ctb], Russell Goldenberg [ctb] (The JS library inst/resources/scrollama/scrollama.min.js)’
Found the following HTML validation problems:
check_lookback.html:46:1 (check_lookback.Rd:10): Warning: missing </ul> before </div>
run_checks_one.html:62:1 (run_checks_one.Rd:18): Warning: missing </ul> before </div>
run_checks_two.html:62:1 (run_checks_two.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Found the following HTML validation problems:
loglikhresid.html:61:1 (loglikhresid.Rd:18): Warning: missing </ul> before </div>
summary.rologit.html:51:1 (summary.rologit.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Pingping Qu <quping14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pingping",
                      family = "Qu",
                      role = c("aut", "cre"),
                      email = "quping14@gmail.com"),
               person(given = "John",
                      family = "Crowley",
                      role = "aut"))
as necessary.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
checkRd: (-1) update_tidy_omic.Rd:16-17: Lost braces
    16 | in \code{updated_tidy_data} (names) and the table {features, samples,
       |                                                   ^
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Horner",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.
Maintainer: ‘Yoann Robin <yoann.robin.k@gmail.com>’

The Description field contains
  generator, see Mezzadri, F. (2007) <arXiv:math-ph/0609050>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bob Rudis <bob@rud.is>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Ruokun Huang <hruokun.2008@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ruokun",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "hruokun.2008@gmail.com")
as necessary.
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
Found the following HTML validation problems:
library.force.html:54:1 (library.force.Rd:15): Warning: missing </ul> before </div>
read.tsv.html:54:1 (read.tsv.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) read_ascii.Rd:33: Lost braces
    33 | \item{respondent_pattern}{For use when the file does not contain a line for every card for every respondent (or contains extra lines that correspond to no respondent), a regular expression that matches the file's respondent identifier; e.g., if the respondent number is stored in the first four digits of each line, preceded by a space, "(?<=^\\s)\\d{4}".}
       |                                                                                                                                                                                                                                                                                                                                                               ^
Found the following HTML validation problems:
plotrope.html:61:1 (plotrope.Rd:19): Warning: missing </ul> before </div>
symmetric.matrix2vector.html:48:1 (symmetric.matrix2vector.Rd:10): Warning: missing </ul> before </div>
vector2symmetric.matrix.html:47:1 (vector2symmetric.matrix.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Rajendra S. Pingte <rajendra.pingte@oracle.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Mukhin",
                      role = "aut"),
               person(given = c("David", "A."),
                      family = "James",
                      role = "aut"),
               person(given = "Jake",
                      family = "Luciani",
                      role = "aut"),
               person(given = c("Rajendra", "S."),
                      family = "Pingte",
                      role = "cre",
                      email = "rajendra.pingte@oracle.com"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Max Czapanskiy [aut, cre] (0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (<https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (<https://orcid.org/0000-0002-4170-7294>)’
  Authors@R: ‘Max Czapanskiy [aut, cre] (ORCID-ID: 0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (ORCID: <https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (ORCID: <https://orcid.org/0000-0002-4170-7294>)’
Maintainer: ‘Martin Wiegand <Martin.Wiegand@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Wiegand",
                    role = c("aut", "cre"),
                    email = "martin.wiegand@mrc-bsu.cam.ac.uk")
as necessary.

The Description field contains
  Wiegand and Nadarajah (2019) <arXiv:1903.09556>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nicola Lunardon <nicola.lunardon@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Lunardon",
                      role = c("aut", "cre"),
                      email = "nicola.lunardon@unimib.it"),
               person(given = "Giovanna",
                      family = "Menardi",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fanova.Rd: leveneTest, lmer, Anova
  formatPvalue.Rd: noZero, formatCI
  formatR.Rd: noZero, formatCI
  ggBoxplot.Rd: ggplot, geom_boxplot
  ggqq.Rd: ggplot
  oneway.Rd: leveneTest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
print.gemm.html:59:1 (print.gemm.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
file_formats.html:101:1 (file_formats.Rd:55): Warning: missing </ul> before </div>
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                ^
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                       ^
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                                  ^
Found the following HTML validation problems:
deprecated.html:223:1 (deprecated.Rd:167): Warning: missing </ul> before </div>
Found the following HTML validation problems:
RosvDownload.html:150:1 (RosvDownload.Rd:92): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:168:1 (RosvDownload.Rd:104): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:184:1 (RosvDownload.Rd:114): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:190:1 (RosvDownload.Rd:118): Warning: <h5> anchor "Arguments" already defined
RosvDownload.html:213:1 (RosvDownload.Rd:131): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:219:1 (RosvDownload.Rd:135): Warning: <h5> anchor "Arguments" already defined
RosvQuery1.html:138:1 (RosvQuery1.Rd:83): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:155:1 (RosvQuery1.Rd:94): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:171:1 (RosvQuery1.Rd:104): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:177:1 (RosvQuery1.Rd:108): Warning: <h5> anchor "Arguments" already defined
RosvQuery1.html:200:1 (RosvQuery1.Rd:121): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:206:1 (RosvQuery1.Rd:125): Warning: <h5> anchor "Arguments" already defined
RosvQueryBatch.html:134:1 (RosvQueryBatch.Rd:86): Warning: <h5> anchor "Usage" already defined
RosvQueryBatch.html:150:1 (RosvQueryBatch.Rd:96): Warning: <h5> anchor "Usage" already defined
RosvQueryBatch.html:176:1 (RosvQueryBatch.Rd:113): Warning: <h5> anchor "Usage" already defined
RosvQueryBatch.html:182:1 (RosvQueryBatch.Rd:117): Warning: <h5> anchor "Arguments" already defined
RosvVulns.html:109:1 (RosvVulns.Rd:62): Warning: <h5> anchor "Usage" already defined
RosvVulns.html:125:1 (RosvVulns.Rd:72): Warning: <h5> anchor "Usage" already defined
RosvVulns.html:131:1 (RosvVulns.Rd:76): Warning: <h5> anchor "Arguments" already defined
RosvVulns.html:154:1 (RosvVulns.Rd:89): Warning: <h5> anchor "Usage" already defined
RosvVulns.html:160:1 (RosvVulns.Rd:93): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Michel Ballings <michel.ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
Arrow3D.html:60:1 (Arrow3D.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
suggest_new_fact.html:57:1 (suggest_new_fact.Rd:15): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:255:1 (inst/NEWS.Rd:141): Warning: missing </ul> before </div>
NEWS.html:40:1 (inst/NEWS.Rd:16): Warning: <h4> anchor "Misc" already defined
NEWS.html:88:1 (inst/NEWS.Rd:43): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:104:1 (inst/NEWS.Rd:52): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:120:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:136:1 (inst/NEWS.Rd:70): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:153:1 (inst/NEWS.Rd:80): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:170:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:197:1 (inst/NEWS.Rd:107): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:232:1 (inst/NEWS.Rd:128): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Marie Delacre <marie.delacre@ulb.ac.be>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Intention.Rd’:
    \keyword{Reminder,}
Found the following HTML validation problems:
config_tag_accepts_linters.html:51:1 (config_tag_accepts_linters.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
regex_capture.html:55:1 (regex_capture.Rd:14): Warning: missing </ul> before </div>
try_parse_typed.html:46:1 (try_parse_typed.Rd:10): Warning: missing </ul> before </div>
try_parse_typedreturn.html:46:1 (try_parse_typedreturn.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Adam Spannbauer <spannbaueradam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Spannbauer",
                    role = c("aut", "cre"),
                    email = "spannbaueradam@gmail.com")
as necessary.
Found the following HTML validation problems:
packed_bar_shiny.html:77:1 (packed_bar_shiny.Rd:31): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:184:1 (inst/NEWS.Rd:81): Warning: missing </ul> before </div>
NEWS.html:133:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "New-function" already defined
NEWS.html:142:1 (inst/NEWS.Rd:63): Warning: <h4> anchor "New-output" already defined
Maintainer: ‘Adrian Bowman <adrian.bowman@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Bowman",
                      role = "aut"),
               person(family = "Bowman",
                      role = "aut"),
               person(family = "Gibson",
                      role = "aut"),
               person(family = "Crawford",
                      role = "aut"),
               person(given = "Adrian",
                      family = "Bowman",
                      role = "cre",
                      email = "adrian.bowman@glasgow.ac.uk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Clyde.Rd:8: Lost braces
     8 | These data record the water quality, in terms of dissolved oxygen (\code{DO}) on a percentage scale, at a number of sampling stations (\code{Station}) on the River Clyde.  The date (\code{Day}, \\code{Month}, \code{Year}) is also available, along with the day of the year (\code{Doy} between 1 and 365) and an identified (\code{id}) of the survey on which each measurement was made.
       |                                                                                                                                                                                                         ^
checkRd: (-1) rp.pos.Rd:22-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:25-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:28-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:31-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:43: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephan",
                    family = "Dlugosz",
                    role = c("aut", "cre"),
                    email = "stephan.dlugosz@googlemail.com")
as necessary.
Maintainer: ‘Giuliano Galimberti <giuliano.galimberti@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Galimberti",
                      role = c("aut", "cre"),
                      email = "giuliano.galimberti@unibo.it"),
               person(given = "Gabriele",
                      family = "Soffritti",
                      role = "aut"),
               person(given = c("Matteo", "Di"),
                      family = "Maso",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel David Peris Diaz <madape@alumni.uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Manuel", "David", "Peris"),
                      family = "Diaz",
                      role = c("aut", "cre"),
                      email = "madape@alumni.uv.es"),
               person(given = c("Maria", "Isabel", "Alcoriza"),
                      family = "Balaguer",
                      role = "aut"))
as necessary.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Shengyu",
                      family = "Zhang",
                      role = "aut",
                      email = "syzhang@uw.edu"),
               person(given = "Douglas",
                      family = "Martin",
                      role = "aut",
                      email = "doug@amath.washington.edu"))
as necessary.
Maintainer: ‘Timothy I. Cannings <timothy.cannings@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "I."),
                      family = "Cannings",
                      role = c("aut", "cre"),
                      email = "timothy.cannings@ed.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Xin",
                      family = "Chen",
                      role = "aut",
                      email = "chenx26@uw.edu"))
as necessary.
Found the following HTML validation problems:
crosstabTest.html:55:1 (crosstabTest.Rd:14): Warning: missing </ul> before </div>
rpf.dTheta.html:59:1 (rpf.dTheta.Rd:19): Warning: missing </ul> before </div>
rpf.mean.info.html:58:1 (rpf.mean.info.Rd:14): Warning: missing </ul> before </div>
rpf.mean.info1.html:54:1 (rpf.mean.info1.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
anova.phylopars.lm.html:57:1 (anova.phylopars.lm.Rd:17): Warning: missing </ul> before </div>
logLik.phylopars.html:57:1 (logLik.phylopars.Rd:17): Warning: missing </ul> before </div>
logLik.phylopars.lm.html:57:1 (logLik.phylopars.lm.Rd:17): Warning: missing </ul> before </div>
print.SSC.html:57:1 (print.SSC.Rd:17): Warning: missing </ul> before </div>
print.phylopars.html:57:1 (print.phylopars.Rd:17): Warning: missing </ul> before </div>
print.phylopars.lm.html:57:1 (print.phylopars.lm.Rd:17): Warning: missing </ul> before </div>
summary.phylopars.html:57:1 (summary.phylopars.Rd:18): Warning: missing </ul> before </div>
summary.phylopars.lm.html:57:1 (summary.phylopars.lm.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot_phylopic.html:57:1 (plot_phylopic.Rd:18): Warning: missing </ul> before </div>
scales.html:170:1 (scales.Rd:93): Warning: missing </ul> before </div>
Maintainer: ‘Colin FAY <contact@colinfay.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Colin",
                    family = "FAY",
                    role = c("aut", "cre"),
                    email = "contact@colinfay.me")
as necessary.
checkRd: (-1) rpivotTable.Rd:60: Lost braces; missing escapes or markup?
    60 | An example is: onRefresh=htmlwidgets::JS("function(config) { Shiny.onInputChange('myPivotData', config); }")
       |                                                            ^
Maintainer: ‘Peter Filzmoser <peter.filzmoser@tuwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Filzmoser",
                      role = c("aut", "cre"),
                      email = "peter.filzmoser@tuwien.ac.at"),
               person(given = "Sukru",
                      family = "Acitas",
                      role = "aut"),
               person(given = "Birdal",
                      family = "Senoglu",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Plattner",
                      role = "aut"))
as necessary.
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Devin", "C."),
                      family = "Koestler",
                      role = "aut"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
checkRd: (-1) plotImage.blcTree.Rd:17: Lost braces
    17 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
checkRd: (-1) plotImage.glcTree.Rd:16: Lost braces
    16 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
Found the following significant warnings:
  rowwise_imax_idx.cpp:17:21: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = int; derived = arma::subview<int>; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  rowwise_max_idx.cpp:17:21: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::subview<double>; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rpm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following HTML validation problems:
print.rpms.html:51:1 (print.rpms.Rd:12): Warning: missing </ul> before </div>
print.rpms_zinf.html:51:1 (print.rpms_zinf.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Sascha Herrmann <sascha.herrmann.consulting@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sascha",
                    family = "Herrmann",
                    role = c("aut", "cre"),
                    email = "sascha.herrmann.consulting@gmail.com")
as necessary.
Found the following HTML validation problems:
box2lower.html:54:1 (box2lower.Rd:14): Warning: missing </ul> before </div>
box2upper.html:54:1 (box2upper.Rd:14): Warning: missing </ul> before </div>
bp.signalprocessor.html:46:1 (bp.signalprocessor.Rd:10): Warning: missing </ul> before </div>
currentVPOBreakoutMethod.html:60:1 (currentVPOBreakoutMethod.Rd:17): Warning: missing </ul> before </div>
currentVPOReversalMethod.html:60:1 (currentVPOReversalMethod.Rd:17): Warning: missing </ul> before </div>
doubleBottom.html:50:1 (doubleBottom.Rd:12): Warning: missing </ul> before </div>
doubleTop.html:50:1 (doubleTop.Rd:12): Warning: missing </ul> before </div>
fallingBottom.html:50:1 (fallingBottom.Rd:12): Warning: missing </ul> before </div>
fallingTop.html:50:1 (fallingTop.Rd:12): Warning: missing </ul> before </div>
maxBox.html:50:1 (maxBox.Rd:12): Warning: missing </ul> before </div>
minBox.html:50:1 (minBox.Rd:12): Warning: missing </ul> before </div>
nextBox.html:58:1 (nextBox.Rd:16): Warning: missing </ul> before </div>
nextReversal.html:62:1 (nextReversal.Rd:18): Warning: missing </ul> before </div>
raisingBottom.html:50:1 (raisingBottom.Rd:12): Warning: missing </ul> before </div>
raisingTop.html:50:1 (raisingTop.Rd:12): Warning: missing </ul> before </div>
signalanalyzer.html:50:1 (signalanalyzer.Rd:12): Warning: missing </ul> before </div>
xo.priceobjective.processor.html:64:1 (xo.priceobjective.processor.Rd:17): Warning: missing </ul> before </div>
xo.processor.html:68:1 (xo.processor.Rd:21): Warning: missing </ul> before </div>
xo.signalprocessor.html:50:1 (xo.signalprocessor.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Aaron Schlegel <aaron@aaronschlegel.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Schlegel",
                    role = c("aut", "cre"),
                    email = "aaron@aaronschlegel.me")
as necessary.
checkRd: (-1) get.poetry.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{output}{Can be any or a combination of the input terms {'author', 'title', 'lines', 'linecount'}. If NULL, all
       |                                                              ^
Found the following HTML validation problems:
bs.html:50:1 (bs.Rd:12): Warning: missing </ul> before </div>
dbConnCheck.html:46:1 (dbConnCheck.Rd:10): Warning: missing </ul> before </div>
dbExistsTable.html:50:1 (dbExistsTable.Rd:12): Warning: missing </ul> before </div>
dbGetDefs.html:50:1 (dbGetDefs.Rd:12): Warning: missing </ul> before </div>
pgCheckGeom.html:56:1 (pgCheckGeom.Rd:15): Warning: missing </ul> before </div>
pgGetGeomQ.html:57:1 (pgGetGeomQ.Rd:17): Warning: missing </ul> before </div>
pgGetSRID.html:54:1 (pgGetSRID.Rd:14): Warning: missing </ul> before </div>
warn_deprecated_rc.html:50:1 (warn_deprecated_rc.Rd:12): Warning: missing </ul> before </div>
warn_deprecated_sp.html:50:1 (warn_deprecated_sp.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Redshift.html:117:1 (Redshift.Rd:67): Warning: missing </ul> before </div>
dbDataType.html:54:1 (dbDataType.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = c("aut", "cre"),
                      email = "lafaye@unsw.edu.au"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"),
               person(given = "Jeremie",
                      family = "Riou",
                      role = "aut"))
as necessary.
Maintainer: ‘Torsten Schoeps <torsten.schoeps@bioinf.med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Heiko", "Mannsperger", "with", "contributions", "of", "Stephan"),
                      family = "Gade",
                      role = "aut"),
               person(given = "Torsten",
                      family = "Schoeps",
                      role = "cre",
                      email = "torsten.schoeps@bioinf.med.uni-goettingen.de"))
as necessary.
Maintainer: ‘Tomas Boril <borilt@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) as.tg.Rd:18: Lost braces; missing escapes or markup?
    18 | Renames the \code{class(tg)["name"]} attribute and sets {class(tg)["type"] <- "TextGrid"} (if it is not already set)
       |                                                         ^
Found the following HTML validation problems:
PrestoConnection-class.html:264:1 (PrestoConnection-class.Rd:203): Warning: missing </ul> before </div>
dbCreateTableAs.html:82:1 (dbCreateTableAs.Rd:29): Warning: missing </ul> before </div>
dbRenameTable.html:58:1 (dbRenameTable.Rd:16): Warning: missing </ul> before </div>
dbplyr-db.html:140:1 (dbplyr-db.Rd:83): Warning: missing </ul> before </div>
dbplyr-sql.html:85:1 (dbplyr-sql.Rd:31): Warning: missing </ul> before </div>
dbplyr_edition.PrestoConnection.html:47:1 (dbplyr_edition.PrestoConnection.Rd:10): Warning: missing </ul> before </div>
dplyr_function_implementations.html:83:1 (dplyr_function_implementations.Rd:32): Warning: missing </ul> before </div>
sqlCreateTableAs.html:77:1 (sqlCreateTableAs.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
Maintainer: ‘Miguel Conde <miguelco2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miguel",
                    family = "Conde",
                    role = c("aut", "cre"),
                    email = "miguelco2000@gmail.com")
as necessary.
checkRd: (-1) check_node.Rd:11: Lost braces
    11 | \item{x}{\\code{list}, the node to check}
       |                ^
Found the following HTML validation problems:
print.rpsftm.coxph.html:55:1 (print.rpsftm.coxph.Rd:14): Warning: missing </ul> before </div>
print.rpsftm.summary.coxph.html:64:1 (print.rpsftm.summary.coxph.Rd:21): Warning: missing </ul> before </div>
print.rpsftm.summary.survreg.html:55:1 (print.rpsftm.summary.survreg.Rd:14): Warning: missing </ul> before </div>
print.rpsftm.survreg.html:51:1 (print.rpsftm.survreg.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LRT_nongaussian.html:62:1 (LRT_nongaussian.Rd:18): Warning: missing </ul> before </div>
bootstrap_nongaussian.html:105:1 (bootstrap_nongaussian.Rd:47): Warning: missing </ul> before </div>
group_vars.html:56:1 (group_vars.Rd:15): Warning: missing </ul> before </div>
permut_nongaussian.html:105:1 (permut_nongaussian.Rd:47): Warning: missing </ul> before </div>
with_warnings.html:48:1 (with_warnings.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
ex_data_table_step.default.html:74:1 (ex_data_table_step.default.Rd:27): Warning: missing </ul> before </div>
checkRd: (-1) ex.Rd:20: Lost braces
    20 | Execute a ops-dag using `code{wrap()}` data as values.
       |                              ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                          ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                                                   ^
checkRd: (-1) R2_lik.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{R2_lik()} is also computed for LMMs and GLMMs in the {MuMIn} package.
       |                                                            ^
checkRd: (-1) R2_pred.Rd:32: Lost braces; missing escapes or markup?
    32 | Note that the version of \code{binaryPGLMM()} in the package ape is replaced by a version contained within {rr2} that outputs all of the required information for the calculation of R2_resid.
       |                                                                                                            ^
checkRd: (-1) R2_resid.Rd:69: Lost braces; missing escapes or markup?
    69 | Note that the version of \code{binaryPGLMM()} in the package ape is replaced by a version contained within {rr2} that outputs all of the required information for the calculation of \code{R2_resid()}
       |                                                                                                            ^
Found the following HTML validation problems:
inv.logit.html:46:1 (inv.logit.Rd:10): Warning: missing </ul> before </div>
File ‘rrapply/libs/rrapply.so’:
  Found non-API calls to R: ‘Rf_isValidString’, ‘Rf_lazy_duplicate’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Wei Jiang <wjiangaa@connect.ust.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "wjiangaa@connect.ust.hk"),
               person(given = "Jing-Hao",
                      family = "Xue",
                      role = "aut"),
               person(given = "Weichuan",
                      family = "Yu",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘HL_H0.pdf’ ‘pi0infer.pdf’ ‘rate.txt’ ‘summary.txt’
Maintainer: ‘Yi He <yi.he@stats.oxon.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "yi.he@stats.oxon.org"),
               person(given = "Yuelin",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Jeffrey Endelman <endelman@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Endelman",
                    role = c("aut", "cre"),
                    email = "endelman@wisc.edu")
as necessary.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Maintainer: ‘Ludovik Çoba <Ludovik.Coba@inf.unibz.it>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rrecsys.Rd’:
    http://dx.doi.org/10.1109/MC.2009.263
checkRd: (-1) rrecsys.Rd:72: Lost braces; missing escapes or markup?
    72 |  The average deviation rating $dev_{ij}$ between co-rated items is defined by:
       |                                    ^
checkRd: (-1) rrecsys.Rd:76: Lost braces; missing escapes or markup?
    76 |  Where $c_{ij}$ is the number of co-ratings between items $i$ and $j$ and $r_{ui}$ is an existing rating for user $u$ on item $i$. The Weighted Slope One takes into account both, information from users who rated the same item and the number of observed ratings.
       |           ^
checkRd: (-1) rrecsys.Rd:76: Lost braces; missing escapes or markup?
    76 |  Where $c_{ij}$ is the number of co-ratings between items $i$ and $j$ and $r_{ui}$ is an existing rating for user $u$ on item $i$. The Weighted Slope One takes into account both, information from users who rated the same item and the number of observed ratings.
       |                                                                              ^
Found the following HTML validation problems:
histogram.html:68:1 (histogram.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Michael Treadwell <michael.treadwell@interworks.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Treadwell",
                    role = c("aut", "cre"),
                    email = "michael.treadwell@interworks.com")
as necessary.
checkRd: (-1) lateformeeting.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) regrad.Rd:46: Lost braces; missing escapes or markup?
    46 |  \item \code{x-axis} {1st column: The names of the different institutions}
       |                      ^
checkRd: (-1) regrad.Rd:47: Lost braces; missing escapes or markup?
    47 |  \item \code{y-axis} {2nd column: The value to show completeness}
       |                      ^
Found the following HTML validation problems:
AddResults.html:48:1 (AddResults.Rd:10): Warning: missing </ul> before </div>
Easy.Run.html:63:1 (Easy.Run.Rd:18): Warning: missing </ul> before </div>
Engine.Finish.html:47:1 (Engine.Finish.Rd:10): Warning: missing </ul> before </div>
Engine.RunModel.html:46:1 (Engine.RunModel.Rd:10): Warning: missing </ul> before </div>
Engine.endAt.html:51:1 (Engine.endAt.Rd:12): Warning: missing </ul> before </div>
Engine.getId.html:48:1 (Engine.getId.Rd:10): Warning: missing </ul> before </div>
Engine.resetModelOutput.html:46:1 (Engine.resetModelOutput.Rd:10): Warning: missing </ul> before </div>
Engine.setParameter.html:54:1 (Engine.setParameter.Rd:14): Warning: missing </ul> before </div>
PB.init.html:51:1 (PB.init.Rd:12): Warning: missing </ul> before </div>
PB.pset.html:46:1 (PB.pset.Rd:10): Warning: missing </ul> before </div>
PB.rnum.html:46:1 (PB.rnum.Rd:10): Warning: missing </ul> before </div>
PB.set.html:46:1 (PB.set.Rd:10): Warning: missing </ul> before </div>
PB.update.html:46:1 (PB.update.Rd:10): Warning: missing </ul> before </div>
SetResults.html:46:1 (SetResults.Rd:10): Warning: missing </ul> before </div>
SetResultsParameters.html:47:1 (SetResultsParameters.Rd:10): Warning: missing </ul> before </div>
SetSimulationParameter.html:54:1 (SetSimulationParameter.Rd:14): Warning: missing </ul> before </div>
SetSimulationParameters.html:52:1 (SetSimulationParameters.Rd:12): Warning: missing </ul> before </div>
setId.html:46:1 (setId.Rd:10): Warning: missing </ul> before </div>
setKeyRandom.html:47:1 (setKeyRandom.Rd:10): Warning: missing </ul> before </div>
setOutputDir.html:47:1 (setOutputDir.Rd:10): Warning: missing </ul> before </div>
setpkgcores.html:46:1 (setpkgcores.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Bowen Wang <bowenwang7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bowen",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "bowenwang7@gmail.com")
as necessary.
Maintainer: ‘Houtao Deng <softwaredeng@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Panos Toulis <panos.toulis@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panos",
                    family = "Toulis",
                    role = c("aut", "cre"),
                    email = "panos.toulis@chicagobooth.edu")
as necessary.
checkRd: (-1) rrinf_clust.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}. See \link{example_clustering} for details.}
       |                                                                                  ^
checkRd: (-1) rrtest_clust.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}.
       |                                                                                  ^
Found the following HTML validation problems:
check_model.html:46:1 (check_model.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Matthias Greiner <matthias.greiner@bfr.bund.de>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rriskDistributions-package.Rd’:
    \concept{
      Beta, Normal, Lognormal, Cauhy, Chi-Quad [TRUNCATED]
Found the following HTML validation problems:
plot.html:146:1 (plot.Rd:76): Warning: missing </ul> before </div>
summary.html:64:1 (summary.Rd:24): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sort_tips.Rd’ ‘sort_tips.r’ ‘tips.r’ ‘validate_rankedPhylo.r’
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rrpack.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) mrrr.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:71-72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:74: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
summary.html:78:1 (summary.Rd:40): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.powerplot.html:51:1 (plot.powerplot.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Gregory Hunt <ghunt@wm.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
center.html:46:1 (center.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Beatriz Cobo Rodríguez <beacr@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Beatriz", "Cobo"),
                      family = "Rodríguez",
                      role = c("aut", "cre"),
                      email = "beacr@ugr.es"),
               person(given = c("María", "del", "Mar", "Rueda"),
                      family = "García",
                      role = "aut"),
               person(given = c("Antonio", "Arcos"),
                      family = "Cebrián",
                      role = "aut"))
as necessary.
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CART_Dummy.Rd’:
    \keyword{CART, partitions}
  File ‘CT.Rd’:
    \keyword{smoothing, hanning}
  File ‘GC.Rd’:
    \keyword{Logistic Regression, Credit data}
  File ‘octane.Rd’:
    \keyword{Histogram, Stem-and-leaf plots}
Found the following HTML validation problems:
check_output_format.html:62:1 (check_output_format.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rsample-dplyr.html:144:1 (rsample-dplyr.Rd:64): Warning: missing </ul> before </div>
Maintainer: ‘Paulo Prado <prado@ib.usp.br>’

The Description field contains
  Resampling Stats (http://www.resample.com) is an add-in for running
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
splot.html:63:1 (splot.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-sampling_defaults.html:55:1 (dot-sampling_defaults.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fitted.RSA.html:55:1 (fitted.RSA.Rd:14): Warning: missing </ul> before </div>
residuals.RSA.html:55:1 (residuals.RSA.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Xiuquan (Xander) Wang <xiuquan.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiuquan",
                      family = "Wang",
                      role = "aut",
                      comment = "Xander"),
               person(given = "Xiuquan",
                      family = "Wang",
                      role = "cre",
                      email = "xiuquan.wang@gmail.com",
                      comment = "Xander"))
as necessary.
checkRd: (-1) rSCA.modeling.Rd:61: Lost braces; missing escapes or markup?
    61 |                 a predefined string to specify how the information of leaf nodes will be stored in the map file. A full list of options for mapvalue is: {mean, max, min, median, interval, radius, variation, random}. Default value is "mean". Use "interval" to get an interval bounded by the minimum and maximum values, (i.e., [min, max]). The option of "radius" will output the mean and the radius [i.e., (max - min) / 2] at the same time. Use "variation" to output the mean and the standard deviation. The option of "random" will output the information as an interval like the "interval" option, but it will use a random value within the interval as the predicted value.
       |                                                                                                                                                          ^
Found the following HTML validation problems:
result2CSV.html:51:1 (result2CSV.Rd:13): Warning: missing </ul> before </div>
shinyAppServer.html:52:1 (shinyAppServer.Rd:14): Warning: missing </ul> before </div>
summary-SimResult-method.html:48:1 (summary-SimResult-method.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
tree.plot.html:50:1 (tree.plot.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
File ‘RSclient/libs/RSclient.so’:
  Found non-API calls to R: ‘BODY’, ‘EXTPTR_PTR’, ‘FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
RCC.html:316:1 (RCC.Rd:228): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Sai Chimata <schimata@yotabitesllc.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sai",
                    family = "Chimata",
                    role = c("aut", "cre"),
                    email = "schimata@yotabitesllc.com")
as necessary.
Found the following HTML validation problems:
addConnectServer.html:62:1 (addConnectServer.Rd:18): Warning: missing </ul> before </div>
authorizedUsers.html:47:1 (authorizedUsers.Rd:11): Warning: missing </ul> before </div>
connectSPCSUser.html:69:1 (connectSPCSUser.Rd:23): Warning: missing </ul> before </div>
lint.html:57:1 (lint.Rd:16): Warning: missing </ul> before </div>
makeLinterMessage.html:55:1 (makeLinterMessage.Rd:14): Warning: missing </ul> before </div>
showMetrics.html:103:1 (showMetrics.Rd:52): Warning: missing </ul> before </div>
syncAppMetadata.html:48:1 (syncAppMetadata.Rd:10): Warning: missing </ul> before </div>
writeManifest.html:173:1 (writeManifest.Rd:104): Warning: missing </ul> before </div>
Found the following HTML validation problems:
set_api_key.html:47:1 (set_api_key.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mudassir Shabbir <mudassir.shabbir@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mudassir",
                      family = "Shabbir",
                      role = c("aut", "cre"),
                      email = "mudassir.shabbir@gmail.com"),
               person(given = "Nabil",
                      family = "Mustafa",
                      role = "aut"),
               person(given = "Saurabh",
                      family = "Ray",
                      role = "aut"))
as necessary.
Maintainer: ‘EL KHMISSI Mohamed <mohamed.el-khmissi01@etu.umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("EL", "KHMISSI"),
                    family = "Mohamed",
                    role = c("aut", "cre"),
                    email = "mohamed.el-khmissi01@etu.umontpellier.fr")
as necessary.
Found the following HTML validation problems:
SDMXStructureType-methods.html:49:1 (SDMXStructureType-methods.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mitra",
                    family = "Ebrahimpoor",
                    role = c("aut", "cre"),
                    email = "mitra.ebrahimpoor@gmail.com")
as necessary.
Found the following HTML validation problems:
doMYBUTTS.html:55:1 (doMYBUTTS.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) remoteDriver-class.Rd:39-40: Lost braces
    39 | browser being used; should be one of {chrome|firefox|htmlunit|
       |                                      ^
checkRd: (-1) remoteDriver-class.Rd:50: Lost braces; missing escapes or markup?
    50 | of {WINDOWS|XP|VISTA|MAC|LINUX|UNIX}. When requesting a new session,
       |    ^
checkRd: (-1) remoteDriver-class.Rd:194-196: Lost braces
   194 |   element, available schemes: {"class name", "css selector",
       |                               ^
checkRd: (-1) webElement-class.Rd:50-52: Lost braces
    50 |     element, available schemes: {"class name", "css selector",
       |                                 ^
checkRd: (-1) webElement-class.Rd:67-69: Lost braces
    67 |     element, available schemes: {"class name", "css selector",
       |                                 ^
'library' or 'require' call not declared from: ‘selectr’
Maintainer: ‘Zhiyong Zhang <zhiyongzhang@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ke-Hai",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhiyongzhang@nd.edu"))
as necessary.
Found the following HTML validation problems:
rsem.index.html:52:1 (rsem.index.Rd:15): Warning: missing </ul> before </div>
rsem.indexv.html:52:1 (rsem.indexv.Rd:15): Warning: missing </ul> before </div>
rsem.indexvc.html:52:1 (rsem.indexvc.Rd:15): Warning: missing </ul> before </div>
rsem.switch.html:48:1 (rsem.switch.Rd:14): Warning: missing </ul> before </div>
semdiag.combinations.html:49:1 (semdiag.combinations.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Subhasree", "Bose", "with", "contributons", "from", "Saptarsi"),
                      family = "Goswami.",
                      role = "aut",
                      email = "subhasree10.7@gmail.com"),
               person(given = "Subhasree",
                      family = "Bose",
                      role = "cre",
                      email = "subhasree10.7@gmail.com"))
as necessary.
Maintainer: ‘Youhua Chen <haydi@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Youhua", "Chen,Tsung-Jen"),
                      family = "Shen",
                      role = "aut"),
               person(given = "Youhua",
                      family = "Chen",
                      role = "cre",
                      email = "haydi@126.com"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

Package has FOSS license, installs .class/.jar but has no 'java' directory.

The BugReports field in DESCRIPTION has
  https://github.com/s-u/Rserve
which should likely be
  https://github.com/s-u/Rserve/issues
instead.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rserve/libs/Rserve.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
  Found ‘rand’, possibly from ‘rand’ (C)
  Found ‘random’, possibly from ‘random’ (C)
  Found ‘srandom’, possibly from ‘srandom’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
File ‘Rserve/libs/Rserve.so’:
  Found non-API calls to R: ‘BODY’, ‘FORMALS’, ‘R_Consolefile’,
    ‘R_Outputfile’, ‘R_TempDir’, ‘R_Visible’, ‘R_curErrorBuf’,
    ‘ptr_R_Busy’, ‘ptr_R_ClearerrConsole’, ‘ptr_R_FlushConsole’,
    ‘ptr_R_ReadConsole’, ‘ptr_R_ResetConsole’, ‘ptr_R_ShowMessage’,
    ‘ptr_R_WriteConsole’, ‘ptr_R_WriteConsoleEx’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Martin Zaefferer <martin.zaefferer@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Konen",
                      role = "aut",
                      email = "wolfgang.konen@fh-koeln.de"),
               person(given = "Martin",
                      family = "Zaefferer",
                      role = c("aut", "cre"),
                      email = "martin.zaefferer@gmx.de"),
               person(given = c("Patrick", "Koch;", "Bug"),
                      family = "hunting",
                      role = "aut"),
               person(given = c("testing", "by", "Ayodele"),
                      family = "Fasika",
                      role = "aut"),
               person(given = "Ashwin",
                      family = "Kumar",
                      role = "aut"),
               person(given = "Prawyn",
                      family = "Jebakumar",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
sfaCheckCondition.html:50:1 (sfaCheckCondition.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Maintainer: ‘Jonathan Dench <jdenc017@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Dench",
                    role = c("aut", "cre"),
                    email = "jdenc017@gmail.com")
as necessary.
Found the following HTML validation problems:
rust_regime_means.html:50:1 (rust_regime_means.Rd:12): Warning: missing </ul> before </div>
rust_rodionov.html:54:1 (rust_rodionov.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.multisimsum.html:46:1 (is.multisimsum.Rd:10): Warning: missing </ul> before </div>
is.simsum.html:46:1 (is.simsum.Rd:10): Warning: missing </ul> before </div>
is.summary.multisimsum.html:46:1 (is.summary.multisimsum.Rd:10): Warning: missing </ul> before </div>
is.summary.simsum.html:46:1 (is.summary.simsum.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_indices.Rd’ ‘get_stac_data.R’ ‘get_stac_data.Rd’
    ‘landsat_mask_function.Rd’
Maintainer: ‘Yumi Kondo <y.kondo@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yumi",
                    family = "Kondo",
                    role = c("aut", "cre"),
                    email = "y.kondo@stat.ubc.ca")
as necessary.
Found the following HTML validation problems:
apply_rules.html:55:1 (apply_rules.Rd:15): Warning: missing </ul> before </div>
extract_raw_rules.html:46:1 (extract_raw_rules.Rd:10): Warning: missing </ul> before </div>
extract_replacement_rules.html:46:1 (extract_replacement_rules.Rd:10): Warning: missing </ul> before </div>
extract_rule_info.html:46:1 (extract_rule_info.Rd:10): Warning: missing </ul> before </div>
extract_rules.html:51:1 (extract_rules.Rd:10): Warning: missing </ul> before </div>
extract_rules_info.html:46:1 (extract_rules_info.Rd:10): Warning: missing </ul> before </div>
remove_accents.html:46:1 (remove_accents.Rd:10): Warning: missing </ul> before </div>
rslp_.html:53:1 (rslp_.Rd:15): Warning: missing </ul> before </div>
verify_sufix.html:51:1 (verify_sufix.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Maintainer: ‘Paul F. Petrowski <pfpetrowski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "F."),
                    family = "Petrowski",
                    role = c("aut", "cre"),
                    email = "pfpetrowski@gmail.com")
as necessary.
'library' or 'require' call not declared from: ‘plot3D’
Found the following HTML validation problems:
SnnsRObject-initializeNet.html:53:1 (SnnsRObject-initializeNet.Rd:14): Warning: missing </ul> before </div>
SnnsRObject-setUnitDefaults.html:75:1 (SnnsRObject-setUnitDefaults.Rd:24): Warning: missing </ul> before </div>
exportToSnnsNetFile.html:55:1 (exportToSnnsNetFile.Rd:14): Warning: missing </ul> before </div>
inputColumns.html:47:1 (inputColumns.Rd:10): Warning: missing </ul> before </div>
outputColumns.html:47:1 (outputColumns.Rd:10): Warning: missing </ul> before </div>
plotRegressionError.html:57:1 (plotRegressionError.Rd:14): Warning: missing </ul> before </div>
print.rsnns.html:51:1 (print.rsnns.Rd:12): Warning: missing </ul> before </div>
savePatFile.html:55:1 (savePatFile.Rd:14): Warning: missing </ul> before </div>
setSnnsRSeedValue.html:46:1 (setSnnsRSeedValue.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
query_fb_marketing_api.html:109:1 (query_fb_marketing_api.Rd:69): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:120:1 (query_fb_marketing_api.Rd:75): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:135:1 (query_fb_marketing_api.Rd:83): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:206:1 (query_fb_marketing_api.Rd:118): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:265:1 (query_fb_marketing_api.Rd:148): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:304:1 (query_fb_marketing_api.Rd:167): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:315:1 (query_fb_marketing_api.Rd:173): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:334:1 (query_fb_marketing_api.Rd:183): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:353:1 (query_fb_marketing_api.Rd:193): Warning: <h4> anchor "----------" already defined
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Gabe",
                      family = "Becker",
                      role = "aut"),
               person(given = "Jan",
                      family = "Vogel",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Found the following HTML validation problems:
bru_get_mapper.inla_rspde_anisotropic2d.html:50:1 (bru_get_mapper.inla_rspde_anisotropic2d.Rd:12): Warning: missing </ul> before </div>
bru_get_mapper.inla_rspde_fintrinsic.html:50:1 (bru_get_mapper.inla_rspde_fintrinsic.Rd:12): Warning: missing </ul> before </div>
bru_get_mapper.inla_rspde_matern1d.html:64:1 (bru_get_mapper.inla_rspde_matern1d.Rd:25): Warning: missing </ul> before </div>
bru_get_mapper.inla_rspde_spacetime.html:50:1 (bru_get_mapper.inla_rspde_spacetime.Rd:12): Warning: missing </ul> before </div>
summary.intrinsicCBrSPDEobj.html:63:1 (summary.intrinsicCBrSPDEobj.Rd:22): Warning: missing </ul> before </div>
summary.rSPDEobj.html:64:1 (summary.rSPDEobj.Rd:23): Warning: missing </ul> before </div>
summary.rSPDEobj1d.html:63:1 (summary.rSPDEobj1d.Rd:22): Warning: missing </ul> before </div>
summary.spacetimeobj.html:63:1 (summary.spacetimeobj.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Anatoly Sorokin <lptolik@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rSpectral.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rSpectral.Rd: igraph
  spectral_igraph_communities.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Theodore Lytras <thlytras@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Theodore",
                    family = "Lytras",
                    role = c("aut", "cre"),
                    email = "thlytras@gmail.com")
as necessary.
Maintainer: ‘Tiago Mendes Dantas <t.mendesdantas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tiago", "Mendes"),
                    family = "Dantas",
                    role = c("aut", "cre"),
                    email = "t.mendesdantas@gmail.com")
as necessary.
Found the following HTML validation problems:
getFeatures.html:50:1 (getFeatures.Rd:12): Warning: missing </ul> before </div>
getPlaylistSongs.html:58:1 (getPlaylistSongs.Rd:16): Warning: missing </ul> before </div>
getRelated.html:50:1 (getRelated.Rd:12): Warning: missing </ul> before </div>
getTopTracks.html:54:1 (getTopTracks.Rd:14): Warning: missing </ul> before </div>
getTrack.html:50:1 (getTrack.Rd:12): Warning: missing </ul> before </div>
searchPlaylist.html:54:1 (searchPlaylist.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Melina Vidoni <melinavidoni@santafe-conicet.gov.ar>’

Found the following (possibly) invalid file URIs:
  URI: reference/get_shortest_path.html
    From: inst/doc/igraph.html
  URI: reference/index.html
    From: inst/doc/rsppfp.html
  URI: reference/direct_graph.html
    From: inst/doc/rsppfp.html
  URI: reference/parse_vpath.html
    From: inst/doc/rsppfp.html
  URI: articles/benchmark.html
    From: README.md
  URI: articles/references.html
    From: README.md

Found the following URLs which should use \doi (with the DOI name only):
  File ‘modify_graph_hsu.Rd’:
    https://doi.org/10.1007/978-3-642-03095-6_60
  File ‘modify_graph_vd.Rd’:
    https://doi.org/10.1016/j.ejor.2004.01.032
Found the following HTML validation problems:
dbBeginTransaction.html:50:1 (dbBeginTransaction.Rd:12): Warning: missing </ul> before </div>
query-dep.html:68:1 (query-dep.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhasree",
                    family = "Bose",
                    role = c("aut", "cre"),
                    email = "subhasree10.7@gmail.com")
as necessary.
Maintainer: ‘Busra Sevinc <busra.sevincc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Busra",
                      family = "Sevinc",
                      role = c("aut", "cre"),
                      email = "busra.sevincc@gmail.com"),
               person(given = "Bekir",
                      family = "Cetintav",
                      role = "aut"),
               person(given = "Melek",
                      family = "Esemen",
                      role = "aut"),
               person(given = "Selma",
                      family = "Gurler",
                      role = "aut"))
as necessary.
Maintainer: ‘Jesse Krijthe <jkrijthe@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/jkrijthe/RSSL
which should likely be
  https://github.com/jkrijthe/RSSL/issues
instead.
Found the following significant warnings:
  utils.cpp:31:17: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&, arma::uword&) const [with elem_type = double; derived = arma::subview<double>; arma::uword = unsigned int]’ is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RSSL.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = c("aut", "cre"),
                      email = "rezgararabzadeh@ut.ac.ir"),
               person(given = "Parisa",
                      family = "Aberi",
                      role = "aut"),
               person(given = "Kaveh",
                      family = "Panaghi",
                      role = "aut"),
               person(given = "Shahab",
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Majid",
                      family = "Montaseri",
                      role = "aut"))
as necessary.
Maintainer: ‘Shawn T. O'Neil <shawn.oneil@cgrb.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Shawn", "T."),
                    family = "O'Neil",
                    role = c("aut", "cre"),
                    email = "shawn.oneil@cgrb.oregonstate.edu")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom-funs.R’
Found the following HTML validation problems:
family.stanmvreg.html:51:1 (family.stanmvreg.Rd:12): Warning: missing </ul> before </div>
family.stanreg.html:47:1 (family.stanreg.Rd:10): Warning: missing </ul> before </div>
formula.stanreg.html:52:1 (formula.stanreg.Rd:13): Warning: missing </ul> before </div>
model.frame.stanmvreg.html:55:1 (model.frame.stanmvreg.Rd:14): Warning: missing </ul> before </div>
model.frame.stanreg.html:51:1 (model.frame.stanreg.Rd:12): Warning: missing </ul> before </div>
model.matrix.stanreg.html:47:1 (model.matrix.stanreg.Rd:10): Warning: missing </ul> before </div>
print.survfit.stanjm.html:57:1 (print.survfit.stanjm.Rd:16): Warning: missing </ul> before </div>
rstanarm-deprecated.html:79:1 (rstanarm-deprecated.Rd:37): Warning: missing </ul> before </div>
terms.stanmvreg.html:51:1 (terms.stanmvreg.Rd:12): Warning: missing </ul> before </div>
terms.stanreg.html:47:1 (terms.stanreg.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
stanemax-methods.html:88:1 (stanemax-methods.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
nsamples.html:51:1 (nsamples.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Xuehui YANG <jianghang@bagualu.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuehui",
                    family = "YANG",
                    role = c("aut", "cre"),
                    email = "jianghang@bagualu.net")
as necessary.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"),
               person(given = "Alexander",
                      family = "Franks",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
tr.html:46:1 (tr.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
eform.html:86:1 (eform.Rd:37): Warning: missing </ul> before </div>
gsm.control.html:174:1 (gsm.control.Rd:83): Warning: missing </ul> before </div>
lines.html:129:1 (lines.Rd:50): Warning: missing </ul> before </div>
rstpm2-internal.html:59:1 (rstpm2-internal.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Leydold",
                    role = c("aut", "cre"),
                    email = "josef.leydold@wu.ac.at")
as necessary.
Found the following HTML validation problems:
createProjectTemplate.html:101:1 (createProjectTemplate.Rd:47): Warning: missing </ul> before </div>
document_position.html:59:1 (document_position.Rd:20): Warning: missing </ul> before </div>
filesPaneNavigate.html:47:1 (filesPaneNavigate.Rd:10): Warning: missing </ul> before </div>
primary_selection.html:53:1 (primary_selection.Rd:12): Warning: missing </ul> before </div>
selections.html:54:1 (selections.Rd:17): Warning: missing </ul> before </div>
setGhostText.html:49:1 (setGhostText.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Martin Atzmueller <martin@atzmueller.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Atzmueller",
                    role = c("aut", "cre"),
                    email = "martin@atzmueller.net")
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Found the following HTML validation problems:
perturb.nu.vector.html:52:1 (perturb.nu.vector.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Rohan Sadler <rohan.sadler@ausvet.com.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Evan",
                      family = "Sergeant",
                      role = "aut"),
               person(given = "Rohan",
                      family = "Sadler",
                      role = "cre",
                      email = "rohan.sadler@ausvet.com.au"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lp.Rd’
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kasper",
                      family = "Welbers",
                      role = c("aut", "cre"),
                      email = "kasperwelbers@gmail.com"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Johan Jordaan <djjordaan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johan",
                    family = "Jordaan",
                    role = c("aut", "cre"),
                    email = "djjordaan@gmail.com")
as necessary.
Maintainer: ‘Haydar Demirhan <haydar.demirhan@rmit.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haydar",
                    family = "Demirhan",
                    role = c("aut", "cre"),
                    email = "haydar.demirhan@rmit.edu.au")
as necessary.
Found the following HTML validation problems:
head_tail.html:107:1 (head_tail.Rd:61): Warning: missing </ul> before </div>
make_col_df.html:71:1 (make_col_df.Rd:26): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_row.Rd’ ‘delete_selected_rows.Rd’ ‘for_each_col.Rd’ ‘redo.Rd’
    ‘set_calculation.Rd’ ‘set_column_defaults.Rd’ ‘set_editor.Rd’
    ‘set_formatter_color.Rd’ ‘set_formatter_datetime.Rd’
    ‘set_formatter_html.Rd’ ‘set_formatter_image.Rd’
    ‘set_formatter_link.Rd’ ‘set_formatter_money.Rd’
    ‘set_formatter_plaintext.Rd’ ‘set_formatter_progress.Rd’
    ‘set_formatter_star.Rd’ ‘set_formatter_textarea.Rd’
    ‘set_formatter_tick_cross.Rd’ ‘set_formatter_toggle_switch.Rd’
    ‘set_formatter_traffic_light.Rd’ ‘set_header_filter.Rd’
    ‘set_multi_column_header.Rd’ ‘set_options_group_by.Rd’
    ‘set_options_pagination.Rd’ ‘set_tooltip.Rd’ ‘tabulatorContext.Rd’
    ‘titanic.Rd’ ‘trigger_download.Rd’ ‘trigger_get_data.Rd’
    ‘trigger_get_sheet_data.Rd’ ‘undo.Rd’
Maintainer: ‘Miron B. Kursa <M.Kursa@icm.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miron", "B."),
                    family = "Kursa",
                    role = c("aut", "cre"),
                    email = "m.kursa@icm.edu.pl")
as necessary.
Maintainer: ‘David Zarruk Valencia <davidzarruk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Zarruk", "Valencia", "&", "Rodrigo", "Azuero"),
                      family = "Melo",
                      role = "aut"),
               person(given = c("David", "Zarruk"),
                      family = "Valencia",
                      role = "cre",
                      email = "davidzarruk@gmail.com"))
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Ruscio",
                      role = c("aut", "cre"),
                      email = "ruscio@tcnj.edu"),
               person(given = "Shirley",
                      family = "Wang",
                      role = "aut",
                      email = "shirleywang@g.harvard.edu"))
as necessary.
Maintainer: ‘Mateu Menendez-Serra <mateu.menendez@ceab.csic.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mateu",
                      family = "Menendez-Serra",
                      role = c("aut", "cre"),
                      email = "mateu.menendez@ceab.csic.es"),
               person(given = c("Vicente", "J."),
                      family = "Ontiveros",
                      role = "aut"),
               person(given = c("Emilio", "O."),
                      family = "Casamayor",
                      role = "aut"),
               person(given = "David",
                      family = "Alonso",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘RTCC.Rd’:
    https://doi.org/10.1038/s41396-019-0454-4
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                              ^
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                                    ^
Found the following HTML validation problems:
deprecated.html:53:1 (deprecated.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Claas-Thido Pfaff <claas-thido.pfaff@idiv-biodiversity.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claas-Thido",
                    family = "Pfaff",
                    role = c("aut", "cre"),
                    email = "claas-thido.pfaff@idiv-biodiversity.de")
as necessary.
Found the following HTML validation problems:
cs_fold.html:54:1 (cs_fold.Rd:14): Warning: missing </ul> before </div>
rs_fold.html:54:1 (rs_fold.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Jake Anderson <ajakef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Anderson",
                    role = c("aut", "cre"),
                    email = "ajakef@gmail.com")
as necessary.
Maintainer: ‘Loren Collingwood <loren.collingwood@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "P."),
                      family = "Jurka",
                      role = "aut"),
               person(given = "Loren",
                      family = "Collingwood",
                      role = c("aut", "cre"),
                      email = "loren.collingwood@gmail.com"),
               person(given = c("Amber", "E."),
                      family = "Boydstun",
                      role = "aut"),
               person(given = "Emiliano",
                      family = "Grossman",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Lingxiao Li <lilingxiao@mail.sdu.edu.cn>’

The Description field contains
  discussed in Barigozzi et al. (2022) <arXiv:2206.09800>, and Barigozzi
  et al. (2023) <arXiv:2303.18163>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘test_addPageBreak.doc’ ‘test_addPlot.doc’ ‘test_addSessionInfo.doc’
  ‘test_addTable.doc’
Found the following HTML validation problems:
ajs_article.html:71:1 (ajs_article.Rd:28): Warning: missing </ul> before </div>
jss_article.html:71:1 (jss_article.Rd:28): Warning: missing </ul> before </div>
rjournal_article.html:172:1 (rjournal_article.Rd:75): Warning: missing </ul> before </div>
rss_article.html:62:1 (rss_article.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.tide_harmonics.html:46:1 (is.tide_harmonics.Rd:10): Warning: missing </ul> before </div>
tide_stations.html:50:1 (tide_stations.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RTIGER’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RTIGER.Rcheck/00install.out’ for details.
Maintainer: ‘Tomas Okal <tomas.okal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Okal",
                    role = c("aut", "cre"),
                    email = "tomas.okal@gmail.com")
as necessary.
Maintainer: ‘Paul Saary <rtk@paulsaary.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Saary",
                      role = c("aut", "cre"),
                      email = "rtk@paulsaary.de"),
               person(given = "Falk",
                      family = "Hildebrand",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘str_rtl.Rd’
Found the following HTML validation problems:
getMinBBox.html:48:1 (getMinBBox.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
save_auth_rtoot.html:54:1 (save_auth_rtoot.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) rt_GET.Rd:13: Lost braces
    13 | code{\link[httr]{GET}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
checkRd: (-1) rt_POST.Rd:13: Lost braces
    13 | code{\link[httr]{POST}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
Found the following HTML validation problems:
compact.html:46:1 (compact.Rd:10): Warning: missing </ul> before </div>
print.rt_api.html:51:1 (print.rt_api.Rd:12): Warning: missing </ul> before </div>
rt.html:168:1 (rt.Rd:81): Warning: missing </ul> before </div>
rt_url.html:56:1 (rt_url.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
theme_rtrek.html:70:1 (theme_rtrek.Rd:29): Warning: missing </ul> before </div>
Found the following HTML validation problems:
split_data.html:54:1 (split_data.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Avi Blinder <aviblinder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Avi",
                    family = "Blinder",
                    role = c("aut", "cre"),
                    email = "aviblinder@gmail.com")
as necessary.
Found the following HTML validation problems:
print.count.summary.html:51:1 (print.count.summary.Rd:12): Warning: missing </ul> before </div>
print.trim.html:51:1 (print.trim.Rd:12): Warning: missing </ul> before </div>
print.trim.gof.html:47:1 (print.trim.gof.Rd:10): Warning: missing </ul> before </div>
print.trim.overall.html:47:1 (print.trim.overall.Rd:10): Warning: missing </ul> before </div>
print.trim.wald.html:47:1 (print.trim.wald.Rd:10): Warning: missing </ul> before </div>
print.trimcommand.html:51:1 (print.trimcommand.Rd:12): Warning: missing </ul> before </div>
summary.trimbatch.html:51:1 (summary.trimbatch.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Houjie Wang <wanghoujie6688@gmail.com>’

The Description field contains
  Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexandre Maurel <alexandre.maurel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandre",
                    family = "Maurel",
                    role = c("aut", "cre"),
                    email = "alexandre.maurel@gmail.com")
as necessary.

The Description field contains
  (https://github.com/tercen/TSON).
Please enclose URLs in angle brackets (<...>).
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Colors.Rd: xts
  rtsplot.Rd: xts
  rtsplot.candle.Rd: xts
  rtsplot.fake.stock.data.Rd: xts
  rtsplot.hl.Rd: xts
  rtsplot.lines.Rd: xts
  rtsplot.matplot.Rd: xts
  rtsplot.ohlc.Rd: xts
  rtsplot.polygon.Rd: xts
  rtsplot.scale.volume.Rd: xts
  rtsplot.text.Rd: xts
  rtsplot.volume.Rd: xts
  rtsplot.x.highlight.Rd: xts
  rtsplot2Y.Rd: xts
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Babak Naimi <naimi.b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babak",
                    family = "Naimi",
                    role = c("aut", "cre"),
                    email = "naimi.b@gmail.com")
as necessary.
checkRd: (-1) rts.Rd:32: Lost braces
    32 | If a name of a raster time series file is provided for the \code{x} argument, it acts the same as code{\link[rts]{read.rts}}.
       |                                                                                                       ^
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Park and Wang (2018)<arXiv:1807.02215>. This work was partially
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
twigs.html:65:1 (twigs.Rd:20): Warning: missing </ul> before </div>
twigs_index.html:65:1 (twigs_index.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_api_response.html:50:1 (check_api_response.Rd:12): Warning: missing </ul> before </div>
create_theme.html:132:1 (create_theme.Rd:74): Warning: missing </ul> before </div>
delete_form.html:51:1 (delete_form.Rd:13): Warning: missing </ul> before </div>
get_authorization.html:46:1 (get_authorization.Rd:10): Warning: missing </ul> before </div>
get_me.html:47:1 (get_me.Rd:11): Warning: missing </ul> before </div>
get_response.html:51:1 (get_response.Rd:12): Warning: missing </ul> before </div>
get_teams.html:50:1 (get_teams.Rd:14): Warning: missing </ul> before </div>
get_workspaces.html:91:1 (get_workspaces.Rd:46): Warning: missing </ul> before </div>
post_response.html:59:1 (post_response.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Found the following HTML validation problems:
check_known_collections.html:53:1 (check_known_collections.Rd:12): Warning: missing </ul> before </div>
get_ploidy_from_frame.html:46:1 (get_ploidy_from_frame.Rd:10): Warning: missing </ul> before </div>
modify_scaled_likelihoods_for_known_mixture_fish.html:55:1 (modify_scaled_likelihoods_for_known_mixture_fish.Rd:16): Warning: missing </ul> before </div>
read_gsi_sim.html:57:1 (read_gsi_sim.Rd:16): Warning: missing </ul> before </div>
tidy_mcmc_coll_rep_stuff.html:59:1 (tidy_mcmc_coll_rep_stuff.Rd:16): Warning: missing </ul> before </div>
tidy_mcmc_pofz.html:59:1 (tidy_mcmc_pofz.Rd:16): Warning: missing </ul> before </div>
tidy_pi_traces.html:59:1 (tidy_pi_traces.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_pack_names.html:48:1 (add_pack_names.Rd:10): Warning: missing </ul> before </div>
expose_single.html:65:1 (expose_single.Rd:20): Warning: missing </ul> before </div>
pack_info.html:52:1 (pack_info.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
multi_predict.html:72:1 (multi_predict.Rd:25): Warning: missing </ul> before </div>
tidy.cubist.html:322:1 (tidy.cubist.Rd:293): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.rumidas.html:51:1 (print.rumidas.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Bryan Jenks <bryanjenks@protonmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/tallguyjenks/runes
which should likely be
  https://github.com/tallguyjenks/runes/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Frédéric Gosselin [cre, aut] (<https://orcid.org/0000-0003-3737-106X>, INRAE), Institut national de recherche pour l‘agriculture, l’alimentation et l'environnement [cph] (INRAE)’
  Authors@R: ‘Frédéric Gosselin [cre, aut] (ORCID: <https://orcid.org/0000-0003-3737-106X>, institution: INRAE), Institut national de recherche pour l‘agriculture, l’alimentation et l'environnement [cph] (INRAE)’
'library' or 'require' calls in package code:
  ‘nimble’ ‘nimbleAPT’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Found the following HTML validation problems:
dot-seq_at.html:50:1 (dot-seq_at.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Mauricio Santelices <m.santelicesa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauricio",
                    family = "Santelices",
                    role = c("aut", "cre"),
                    email = "m.santelicesa@gmail.com")
as necessary.
Maintainer: ‘Johann Gagnon-Bartsch <johanngb@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johann",
                    family = "Gagnon-Bartsch",
                    role = c("aut", "cre"),
                    email = "johanngb@umich.edu")
as necessary.
checkRd: (-1) RUVIII.Rd:51: Lost braces
    51 | If code{return.info} is \code{TRUE}, a list is returned that contains:
       |        ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                                   ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘RVA.Rmd’ using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’

SUMMARY: processing the following file failed:
  ‘RVA.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
calc.cfb.html:67:1 (calc.cfb.Rd:25): Warning: missing </ul> before </div>
get.cpm.colors.html:46:1 (get.cpm.colors.Rd:10): Warning: missing </ul> before </div>
get.cutoff.df.html:65:1 (get.cutoff.df.Rd:19): Warning: missing </ul> before </div>
get.cutoff.ggplot.html:57:1 (get.cutoff.ggplot.Rd:15): Warning: missing </ul> before </div>
make.cutoff.plotly.html:49:1 (make.cutoff.plotly.Rd:10): Warning: missing </ul> before </div>
plot_cutoff_single.html:64:1 (plot_cutoff_single.Rd:18): Warning: missing </ul> before </div>
plot_heatmap.cfb.html:62:1 (plot_heatmap.cfb.Rd:20): Warning: missing </ul> before </div>
plot_heatmap.cpm.html:62:1 (plot_heatmap.cpm.Rd:20): Warning: missing </ul> before </div>
produce.cutoff.message.html:86:1 (produce.cutoff.message.Rd:35): Warning: missing </ul> before </div>
produce.cutoff.warning.html:51:1 (produce.cutoff.warning.Rd:12): Warning: missing </ul> before </div>
reformat.ensembl.html:56:1 (reformat.ensembl.Rd:16): Warning: missing </ul> before </div>
transform.geneid.html:64:1 (transform.geneid.Rd:20): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:528:1 (inst/NEWS.Rd:259): Warning: missing </ul> before </div>
NEWS.html:53:1 (inst/NEWS.Rd:23): Warning: <h4> anchor "bug-fixed" already defined
NEWS.html:71:1 (inst/NEWS.Rd:32): Warning: <h4> anchor "bug-fixed" already defined
NEWS.html:134:1 (inst/NEWS.Rd:65): Warning: <h4> anchor "small-changes-and-fixes" already defined
NEWS.html:158:1 (inst/NEWS.Rd:77): Warning: <h4> anchor "small-changes-and-fixes" already defined
NEWS.html:176:1 (inst/NEWS.Rd:87): Warning: <h4> anchor "new-features" already defined
NEWS.html:205:1 (inst/NEWS.Rd:101): Warning: <h4> anchor "new-features" already defined
NEWS.html:223:1 (inst/NEWS.Rd:111): Warning: <h4> anchor "new-features" already defined
NEWS.html:284:1 (inst/NEWS.Rd:142): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:300:1 (inst/NEWS.Rd:151): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:315:1 (inst/NEWS.Rd:159): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:330:1 (inst/NEWS.Rd:168): Warning: <h4> anchor "new-features" already defined
NEWS.html:365:1 (inst/NEWS.Rd:184): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:383:1 (inst/NEWS.Rd:193): Warning: <h4> anchor "new-features" already defined
NEWS.html:400:1 (inst/NEWS.Rd:200): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:418:1 (inst/NEWS.Rd:210): Warning: <h4> anchor "new-features" already defined
NEWS.html:435:1 (inst/NEWS.Rd:217): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:456:1 (inst/NEWS.Rd:228): Warning: <h4> anchor "bug-fixes" already defined
Found the following HTML validation problems:
meshInfo.html:46:1 (meshInfo.Rd:10): Warning: missing </ul> before </div>
vcgPlatonic.html:88:1 (vcgPlatonic.Rd:49): Warning: missing </ul> before </div>
Maintainer: ‘Etor Arza <etorarza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Etor",
                    family = "Arza",
                    role = c("aut", "cre"),
                    email = "etorarza@gmail.com")
as necessary.
Found the following HTML validation problems:
cpp_helper_from_ranks_to_integrable_values.html:50:1 (cpp_helper_from_ranks_to_integrable_values.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rx_multiple.html:58:1 (rx_multiple.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LiveHTML.html:136:1 (LiveHTML.Rd:80): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:142:1 (LiveHTML.Rd:84): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:165:1 (LiveHTML.Rd:97): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:181:1 (LiveHTML.Rd:107): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:187:1 (LiveHTML.Rd:111): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:210:1 (LiveHTML.Rd:124): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:216:1 (LiveHTML.Rd:128): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:241:1 (LiveHTML.Rd:143): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:257:1 (LiveHTML.Rd:153): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:263:1 (LiveHTML.Rd:157): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:286:1 (LiveHTML.Rd:170): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:292:1 (LiveHTML.Rd:174): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:315:1 (LiveHTML.Rd:187): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:321:1 (LiveHTML.Rd:191): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:345:1 (LiveHTML.Rd:205): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:351:1 (LiveHTML.Rd:209): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:376:1 (LiveHTML.Rd:224): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:382:1 (LiveHTML.Rd:228): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:411:1 (LiveHTML.Rd:247): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:417:1 (LiveHTML.Rd:251): Warning: <h5> anchor "Arguments" already defined
google_form.html:46:1 (google_form.Rd:10): Warning: missing </ul> before </div>
repair_encoding.html:49:1 (repair_encoding.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.
Maintainer: ‘Charles Determan Jr <cdetermanjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Determan Jr.",
                      role = "aut"),
               person(given = "Charles",
                      family = "Determan Jr",
                      role = "cre",
                      email = "cdetermanjr@gmail.com"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CRAN.R-project.org
    From: README.md

The BugReports field in DESCRIPTION has
  http://github.com/cdeterman/RViennaCL/issues/new
which should likely be
  http://github.com/cdeterman/RViennaCL/issues/new/issues
instead.
Maintainer: ‘Alun Thomas <Alun.Thomas@utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alun",
                    family = "Thomas",
                    role = c("aut", "cre"),
                    email = "alun.thomas@utah.edu")
as necessary.
Maintainer: ‘Alexey Seleznev <selesnow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Seleznev",
                    role = c("aut", "cre"),
                    email = "selesnow@gmail.com")
as necessary.
Maintainer: ‘Parker Holzer <parker.holzer@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Parker",
                    family = "Holzer",
                    role = c("aut", "cre"),
                    email = "parker.holzer@yale.edu")
as necessary.

The Description field contains
  <arXiv:2005.14083>, which is a particular application of the radial
  al. (2020) <arXiv:2005.14083> when publishing results that use this
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Navarro Fabien <fnavarro@math.cnrs.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "F.",
                      family = "Navarro",
                      role = "aut"),
               person(given = "C.",
                      family = "Chesneau",
                      role = "aut"),
               person(given = "Navarro",
                      family = "Fabien",
                      role = "cre",
                      email = "fnavarro@math.cnrs.fr"))
as necessary.
checkRd: (-1) HardThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
checkRd: (-1) SoftThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
Found the following HTML validation problems:
npl.html:49:1 (npl.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘wcvp_checklist.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wcvp_summary_gt.Rd: gt
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alan Butler <rabutler@usbr.gov>’

Found the following (possibly) invalid URLs:
  URL: http://www.riverware.org/HelpSystem/index.html#page/SolutionApproaches/Solutions_MRM.4.5.html#ww477402
    From: man/read_rw_csv.Rd
    Message: Invalid URL: '#' not allowed in fragment
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
as_rwd_agg.html:63:1 (as_rwd_agg.Rd:25): Warning: missing </ul> before </div>
createSlotAggList.html:48:1 (createSlotAggList.Rd:11): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:78:1 (inst/NEWS.Rd:37): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Mafalda Sá Ferreira <msm.ferreira@campus.fct.unl.pt>’

The Description field contains
  <arXiv:2112.07508v3> and Oliveira et al. (2021) <arXiv:2102.05373v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
lookup_emoji.html:63:1 (lookup_emoji.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Found the following HTML validation problems:
WBjdoql.html:104:1 (WBjdoql.Rd:42): Warning: missing </ul> before </div>
WBsearchURL.html:62:1 (WBsearchURL.Rd:18): Warning: missing </ul> before </div>
filterstring.html:58:1 (filterstring.Rd:16): Warning: missing </ul> before </div>
sexstring.html:46:1 (sexstring.Rd:10): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Maintainer: ‘Andy South <southandy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andy",
                    family = "South",
                    role = c("aut", "cre"),
                    email = "southandy@gmail.com")
as necessary.
Malformed Title field: should not end in a period.
Found the following HTML validation problems:
funmaintext.html:122:1 (funmaintext.Rd:54): Warning: missing </ul> before </div>
s_hs.html:89:1 (s_hs.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Felipe Souza <lipecaso@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) wtss_to_ts.Rd:31: Lost braces; missing escapes or markup?
    31 | This period can be either {"month", "week", "day"}, 
       |                           ^
checkRd: (-1) wtss_to_ts.Rd:32: Lost braces; missing escapes or markup?
    32 | {"months", "weeks", "days"} or
       | ^
checkRd: (-1) wtss_to_ts.Rd:33: Lost braces; missing escapes or markup?
    33 | {12, 52, 365}. This function creates a new time series with the required 
       | ^
'::' or ':::' imports not declared from:
  ‘changepoint’ ‘strucchange’
'library' or 'require' calls not declared from:
  ‘changepoint’ ‘strucchange’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [5s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(Rwtss)
  Rwtss - R interface to Web Time Series Service.
  Loaded Rwtss v0.9.2.
          See ?Rwtss for help, citation("Rwtss") for use in publication.
          See demo(package = "Rwtss") for examples.
  > 
  > test_check("Rwtss")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_wtss.R:60:9'): Plot ──────────────────────────────────────────
  unname(summary(g)[1, 2]) == "gg" is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  Backtrace:
      ▆
   1. ├─vcr::use_cassette(...) at test_wtss.R:53:5
   2. │ └─base::withCallingHandlers(...)
   3. └─testthat::expect_true(unname(summary(g)[1, 2]) == "gg") at test_wtss.R:60:9
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ]
  Error: Test failures
  In addition: Warning message:
  `check_cassette_names()` was deprecated in vcr 2.0.0. 
  Execution halted
Found the following HTML validation problems:
dot-wtss_coverage_description.html:50:1 (dot-wtss_coverage_description.Rd:12): Warning: missing </ul> before </div>
dot-wtss_ggplot_series.html:51:1 (dot-wtss_ggplot_series.Rd:12): Warning: missing </ul> before </div>
pipe.html:40:1 (pipe.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Eric Hare <eric@omnianalytics.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Shum",
                      role = "aut",
                      email = "alex@ALShum.com"),
               person(given = "Eric",
                      family = "Hare",
                      role = "cre",
                      email = "eric@omnianalytics.io"))
as necessary.
Found the following HTML validation problems:
build_url.html:58:1 (build_url.Rd:16): Warning: missing </ul> before </div>
measurement_exists.html:50:1 (measurement_exists.Rd:12): Warning: missing </ul> before </div>
stop_for_error.html:46:1 (stop_for_error.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Bob Obenchain <wizbob@att.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bob",
                    family = "Obenchain",
                    role = c("aut", "cre"),
                    email = "wizbob@att.net")
as necessary.
checkRd: (-1) plot.eff.ridge.Rd:6: Lost braces
     6 |  emph{Single Interior Knot} at the MSE Optimal m-Extent of Shrinkage. The
       |      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  eff.biv.Rd: ellipse.lm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
methods_rxylib.html:59:1 (methods_rxylib.Rd:18): Warning: missing </ul> before </div>
Specified C++14: please drop specification unless essential
Found the following HTML validation problems:
set_output_width.html:46:1 (set_output_width.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mikkel Meyer Andersen <mikl@math.aau.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.

The Description field contains
  'Yandex Translate' (https://translate.yandex.com/) is a statistical
  https://tech.yandex.com/translate/doc/dg/concepts/About-docpage/ .
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Tom August <tomaug@ceh.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "August",
                    role = c("aut", "cre"),
                    email = "tomaug@ceh.ac.uk")
as necessary.
Found the following HTML validation problems:
parse_port.html:46:1 (parse_port.Rd:10): Warning: missing </ul> before </div>
parse_timepoint.html:46:1 (parse_timepoint.Rd:10): Warning: missing </ul> before </div>
parse_timeseries.html:46:1 (parse_timeseries.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joris Bierkens <j.bierkens@vu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joris",
                    family = "Bierkens",
                    role = c("aut", "cre"),
                    email = "j.bierkens@vu.nl")
as necessary.

The Description field contains
  <arXiv:1607.03188> applied and Bouncy Particle Sampler
  <arXiv:1510.02451> for a Gaussian target and Student distribution.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                   ^
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                                 ^
checkRd: (-1) ZigZagLogistic.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{dataY}{Vector of length n containing {0, 1}-valued observations of the dependent variable y.}
       |                                            ^
Found the following HTML validation problems:
receive.multipart.html:46:1 (receive.multipart.Rd:8): Warning: missing </ul> before </div>
send.multipart.html:52:1 (send.multipart.Rd:11): Warning: missing </ul> before </div>
checkRd: (-1) ciReg.Rd:10: Lost braces
    10 | \item{fit}{an object of class{lm}, i.e. the output from \code{\link{lm}}.}
       |                              ^
Found the following HTML validation problems:
s2_cell_is_valid.html:102:1 (s2_cell_is_valid.Rd:78): Warning: missing </ul> before </div>
s2_cell_union_normalize.html:103:1 (s2_cell_union_normalize.Rd:62): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘s3_check_for_file.R’ ‘s3_file_size.R’ ‘s3_get.Rd’ ‘s3_get_files.R’
    ‘s3_parse_uri.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fit_density_ratio.R’ ‘fit_plug_and_play.R’
Found the following HTML validation problems:
get_functions.html:46:1 (get_functions.Rd:10): Warning: missing </ul> before </div>
pnp_gaussian.html:58:1 (pnp_gaussian.Rd:16): Warning: missing </ul> before </div>
pnp_kde.html:58:1 (pnp_kde.Rd:16): Warning: missing </ul> before </div>
pnp_none.html:50:1 (pnp_none.Rd:12): Warning: missing </ul> before </div>
pnp_vine.html:54:1 (pnp_vine.Rd:14): Warning: missing </ul> before </div>
File ‘S7/libs/S7.so’:
  Found non-API calls to R: ‘FORMALS’, ‘Rf_allocSExp’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Zhongyang Zhang <zhongyang.zhang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhongyang.zhang@mssm.edu"),
               person(given = "Ke",
                      family = "Hao",
                      role = "aut"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "ctb"))
as necessary.
Maintainer: ‘Jakub Nowosad <nowosad.jakub@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhong Guan <zguan@iusb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhong",
                    family = "Guan",
                    role = c("aut", "cre"),
                    email = "zguan@iusb.edu")
as necessary.
checkRd: (-1) BootsChapt.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) SemiparChangePoint.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) schapt.Rd:44: Escaped LaTeX specials: \&
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rampal", "S.", "Etienne", "&", "Bart"),
                      family = "Haegeman",
                      role = "aut"),
               person(given = c("Rampal", "S."),
                      family = "Etienne",
                      role = "cre",
                      email = "r.s.etienne@rug.nl"))
as necessary.
Found the following HTML validation problems:
summary.sads-class.html:54:1 (summary.sads-class.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
run_app.html:81:1 (run_app.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Sheerin Dahwan Aziz <sheerindahwan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"),
               person(given = c("Sheerin", "Dahwan"),
                      family = "Aziz",
                      role = c("aut", "cre"),
                      email = "sheerindahwan@gmail.com"))
as necessary.
Maintainer: ‘Rizki Ananda Fauziah <rizkiananda133@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rizki", "Ananda"),
                      family = "Fauziah",
                      role = c("aut", "cre"),
                      email = "rizkiananda133@gmail.com"),
               person(given = c("Ika", "Yuni"),
                      family = "Wulansari",
                      role = "aut"))
as necessary.
Maintainer: ‘Velia Tri Marliana <221810642@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Velia", "Tri"),
                      family = "Marliana",
                      role = c("aut", "cre"),
                      email = "221810642@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Rizqina Rahmati <221810583@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rizqina",
                      family = "Rahmati",
                      role = c("aut", "cre"),
                      email = "221810583@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Wicak Surya Hasani <221710052@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Wicak", "Surya"),
                      family = "Hasani",
                      role = c("aut", "cre"),
                      email = "221710052@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
boostrap.data.html:63:1 (boostrap.data.Rd:26): Warning: missing </ul> before </div>
extract-methods.html:78:1 (extract-methods.Rd:36): Warning: missing </ul> before </div>
read-methods.html:55:1 (read-methods.Rd:16): Warning: missing </ul> before </div>
sub-SaemixModel-method.html:59:1 (sub-SaemixModel-method.Rd:16): Warning: missing </ul> before </div>
sub-SaemixObject-method.html:59:1 (sub-SaemixObject-method.Rd:16): Warning: missing </ul> before </div>
sub-SaemixRes-method.html:59:1 (sub-SaemixRes-method.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Yolanda Marhuenda <y.marhuenda@umh.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabel",
                      family = "Molina",
                      role = "aut"),
               person(given = "Yolanda",
                      family = "Marhuenda",
                      role = c("aut", "cre"),
                      email = "y.marhuenda@umh.es"))
as necessary.
Maintainer: ‘Sebastian Warnholz <wahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Warnholz",
                    role = c("aut", "cre"),
                    email = "wahani@gmail.com")
as necessary.
Found the following HTML validation problems:
update.html:64:1 (update.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.sim_setup.html:59:1 (as.data.frame.sim_setup.Rd:16): Warning: missing </ul> before </div>
base_add_id.html:50:1 (base_add_id.Rd:12): Warning: missing </ul> before </div>
pipe.html:50:1 (pipe.Rd:12): Warning: missing </ul> before </div>
read_data.html:62:1 (read_data.Rd:25): Warning: missing </ul> before </div>
sim_comp_preconf.html:52:1 (sim_comp_preconf.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Asun Lubiano <lubiano@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Trutschnig",
                      role = "aut",
                      email = "wolfgang@trutschnig.net"),
               person(given = "Asun",
                      family = "Lubiano",
                      role = c("aut", "cre"),
                      email = "lubiano@uniovi.es"))
as necessary.
Found the following HTML validation problems:
vars_tags.html:50:1 (vars_tags.Rd:12): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Alexander Ly <a.ly@jasp-stats.org>’

The Description field contains
  (2019) "Safe Testing" <arXiv:1906.07801>, for details on safe logrank
  Horizon" <arXiv:2011.06931v3> and Turner, Ly and Grunwald (2021) "Safe
  beyond" <arXiv:2106.02693> for details on safe contingency table tests.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
safetensors.html:127:1 (safetensors.Rd:80): Warning: <h5> anchor "Usage" already defined
safetensors.html:143:1 (safetensors.Rd:90): Warning: <h5> anchor "Usage" already defined
safetensors.html:149:1 (safetensors.Rd:94): Warning: <h5> anchor "Arguments" already defined
safetensors.html:172:1 (safetensors.Rd:107): Warning: <h5> anchor "Usage" already defined
safetensors.html:178:1 (safetensors.Rd:111): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
render_widget.html:54:1 (render_widget.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
backwards.tiebreak.html:54:1 (backwards.tiebreak.Rd:14): Warning: missing </ul> before </div>
forwards.tiebreak.html:54:1 (forwards.tiebreak.Rd:14): Warning: missing </ul> before </div>
ordered.preferences.html:46:1 (ordered.preferences.Rd:10): Warning: missing </ul> before </div>
ordered.tiebreak.html:50:1 (ordered.tiebreak.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Dragonera.Rd’:
    https://doi.org/10.1016/j.apenergy.2017.09.030
  File ‘EstacaDeBares.Rd’:
    https://doi.org/10.1016/j.oceaneng.2015.05.038
    https://doi.org/10.1109/JOE.2016.2529400
  File ‘SailoR-package.Rd’:
    https://doi.org/10.5194/gmd-13-3221-2020
  File ‘WRF.Rd’:
    https://doi.org/10.1002/2017JD027511
    https://doi.org/10.1007/s00382-019-04673-9
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘class-2-differential.r’ ‘dual-apply.r’ ‘dual-math.r’
    ‘dual-summary.r’ ‘dual-test-near-equality.r’ ‘dual.r’ ‘dualFun1.Rd’
Found the following HTML validation problems:
rforcecom.getServerTimestamp.html:52:1 (rforcecom.getServerTimestamp.Rd:16): Warning: missing </ul> before </div>
rforcecom.retrieve.html:100:1 (rforcecom.retrieve.Rd:48): Warning: missing </ul> before </div>
rforcecom.search.html:56:1 (rforcecom.search.Rd:18): Warning: missing </ul> before </div>
sf_report_folder_children.html:56:1 (sf_report_folder_children.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Yuwen Gu <yuwen.gu@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuwen",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "yuwen.gu@uconn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "zouxx019@umn.edu"))
as necessary.
Found the following HTML validation problems:
fit_CM.html:252:1 (fit_CM.Rd:123): Warning: <h3> anchor "start" already defined
smolt_func.html:200:1 (smolt_func.Rd:119): Warning: <h3> anchor "hatchery_args" already defined
Maintainer: ‘Scott Vander Wiel <scottv@lanl.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hannah",
                      family = "Director",
                      role = "aut"),
               person(given = c("Scott", "Vander"),
                      family = "Wiel",
                      role = c("aut", "cre"),
                      email = "scottv@lanl.gov"),
               person(given = "James",
                      family = "Gattiker",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Rix <alexrix@umich.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘approxdist.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘nonlogistic.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘obsloglik.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘obsloglikEM.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘sensitivity.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
Maintainer: ‘Norbert Krautenbacher <norbert.krautenbacher@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norbert",
                      family = "Krautenbacher",
                      role = c("aut", "cre"),
                      email = "norbert.krautenbacher@tum.de"),
               person(given = "Kevin",
                      family = "Strauss",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Mandl",
                      role = "aut"),
               person(given = "Christiane",
                      family = "Fuchs",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael Baldassaro <mbaldassaro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Baldassaro",
                    role = c("aut", "cre"),
                    email = "mbaldassaro@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) binaryChoice.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Hongchao Qi <hcqi1992@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongchao",
                      family = "Qi",
                      role = c("aut", "cre"),
                      email = "hcqi1992@gmail.com"),
               person(given = "Fang",
                      family = "Zhu",
                      role = "aut"))
as necessary.
Maintainer: ‘Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hugo", "Andres", "Gutierrez"),
                    family = "Rojas",
                    role = c("aut", "cre"),
                    email = "hagutierrezro@gmail.com")
as necessary.
Found the following HTML validation problems:
print.power.cmh.html:60:1 (print.power.cmh.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘William Wheeler <WheelerB@imsweb.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mitchell", "H."),
                      family = "Gail",
                      role = "aut"),
               person(given = "William",
                      family = "Wheeler",
                      role = "cre",
                      email = "WheelerB@imsweb.com"))
as necessary.
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Jonathan Lisic <jlisic@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Lisic",
                      role = c("aut", "cre"),
                      email = "jlisic@gmail.com"),
               person(given = "Anton",
                      family = "Grafström",
                      role = "aut"))
as necessary.
Maintainer: ‘Juliane Manitz <r@manitz.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juliane",
                      family = "Manitz",
                      role = c("aut", "cre"),
                      email = "r@manitz.org"),
               person(given = "Mark",
                      family = "Hempelmann",
                      role = "ctb"),
               person(given = "Goeran",
                      family = "Kauermann",
                      role = "ctb"),
               person(given = "Helmut",
                      family = "Kuechenhoff",
                      role = "aut"),
               person(given = "Shuai",
                      family = "Shao",
                      role = "ctb"),
               person(given = "Cornelia",
                      family = "Oberhauser",
                      role = "ctb"),
               person(given = "Nina",
                      family = "Westerheide",
                      role = "ctb"),
               person(given = "Manuel",
                      family = "Wiesenfarth",
                      role = "ctb"))
as necessary.
Maintainer: ‘Diana Trutschel <Diana.Trutschel@dzne.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diana",
                      family = "Trutschel",
                      role = c("aut", "cre"),
                      email = "diana.trutschel@dzne.de"),
               person(given = "Hendrik",
                      family = "Treutler",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
alokasi_dt.html:58:1 (alokasi_dt.Rd:17): Warning: missing </ul> before </div>
round_preserve_sum.html:50:1 (round_preserve_sum.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Emilio Lopez Escobar <emilio@quantos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emilio", "Lopez"),
                      family = "Escobar",
                      role = c("aut", "cre", "cph"),
                      email = "emilio@quantos.mx"),
               person(given = c("Ernesto", "Barrios"),
                      family = "Zamudio",
                      role = "ctb",
                      email = "ebarrios@itam.mx"),
               person(given = c("Juan", "Francisco", "Munoz"),
                      family = "Rosas",
                      role = "ctb",
                      email = "jfmunoz@go.ugr.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
CoreABS.html:136:1 (CoreABS.Rd:86): Warning: <h5> anchor "Usage" already defined
CoreABS.html:142:1 (CoreABS.Rd:90): Warning: <h5> anchor "Arguments" already defined
Zhu23ABS.html:158:1 (Zhu23ABS.Rd:134): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:164:1 (Zhu23ABS.Rd:138): Warning: <h5> anchor "Arguments" already defined
Zhu23ABS.html:274:1 (Zhu23ABS.Rd:191): Warning: <h5> anchor "Examples" already defined
Zhu23ABS.html:305:1 (Zhu23ABS.Rd:217): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:311:1 (Zhu23ABS.Rd:221): Warning: <h5> anchor "Arguments" already defined
Zhu23ABS.html:324:1 (Zhu23ABS.Rd:228): Warning: <h5> anchor "Details" already defined
Zhu23ABS.html:340:1 (Zhu23ABS.Rd:236): Warning: <h5> anchor "Examples" already defined
Zhu23ABS.html:360:1 (Zhu23ABS.Rd:251): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:376:1 (Zhu23ABS.Rd:261): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:382:1 (Zhu23ABS.Rd:265): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Haoming Jiang <jianghm.ustc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haoming",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "jianghm.ustc@gmail.com"),
               person(given = "Yukun",
                      family = "Ma",
                      role = "aut"),
               person(given = "Han",
                      family = "Liu",
                      role = "aut"),
               person(given = "Kathryn",
                      family = "Roeder",
                      role = "aut"),
               person(given = "Xingguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Tuo",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = c("Michael", "J."),
                      family = "Seo",
                      role = "aut"),
               person(given = "G.",
                      family = "Chu",
                      role = "aut"),
               person(given = "Balasubramanian",
                      family = "Narasimhan",
                      role = "aut"),
               person(given = "Jun",
                      family = "Li",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stanford.edu"))
as necessary.
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
Found the following HTML validation problems:
transformedWeights.html:56:1 (transformedWeights.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Jiayi Ji <Jiayi.Ji@mountsinai.org>’

The Description field contains
  cancer data <arXiv:2012.06093>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Florian Lecocq <florian.lecocq@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘samurais-package.Rd’:
    https://doi.org/10.1002/widm.1298
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/samurais.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) ModelHMMR-class.Rd:37: Lost braces; missing escapes or markup?
    37 |         class {StatHMMR}).
       |               ^
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
Maintainer: ‘Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "Myles"),
                    family = "McDonnell",
                    role = c("aut", "cre"),
                    email = "robertmylesmcdonnell@gmail.com")
as necessary.
Found the following HTML validation problems:
san_fran_Ocean_Beach.html:51:1 (san_fran_Ocean_Beach.Rd:13): Warning: missing </ul> before </div>
san_fran_aquatic_park.html:46:1 (san_fran_aquatic_park.Rd:10): Warning: missing </ul> before </div>
san_fran_baker_beach.html:51:1 (san_fran_baker_beach.Rd:13): Warning: missing </ul> before </div>
san_fran_crissy_field.html:50:1 (san_fran_crissy_field.Rd:12): Warning: missing </ul> before </div>
san_fran_hydeSt_pier.html:46:1 (san_fran_hydeSt_pier.Rd:10): Warning: missing </ul> before </div>
san_fran_islais_creek.html:46:1 (san_fran_islais_creek.Rd:10): Warning: missing </ul> before </div>
san_fran_jackrabbit.html:46:1 (san_fran_jackrabbit.Rd:10): Warning: missing </ul> before </div>
san_fran_mission_creek.html:46:1 (san_fran_mission_creek.Rd:10): Warning: missing </ul> before </div>
san_fran_sunnydale_cove.html:46:1 (san_fran_sunnydale_cove.Rd:10): Warning: missing </ul> before </div>
san_fran_windsurfer_circle.html:46:1 (san_fran_windsurfer_circle.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "January",
                      family = "Weiner",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
sankeywheel-shiny.html:68:1 (sankeywheel-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atsushi",
                    family = "Kawaguchi",
                    role = c("aut", "cre"),
                    email = "kawa_a24@yahoo.co.jp")
as necessary.
Found the following HTML validation problems:
covar.html:46:1 (covar.Rd:11): Warning: missing </ul> before </div>
grp.html:50:1 (grp.Rd:13): Warning: missing </ul> before </div>
strt.html:46:1 (strt.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-relabell.html:46:1 (dot-relabell.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Murtaza Nasir <mail@murtaza.cc>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arnaud Wolfer <adwolfer@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/adwolfer/santaR/issues/new
which should likely be
  https://github.com/adwolfer/santaR/issues/new/issues
instead.
Found the following HTML validation problems:
breaks-class.html:56:1 (breaks-class.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-sapflow_tidy.html:47:1 (dot-sapflow_tidy.Rd:10): Warning: missing </ul> before </div>
initialize-sfn_data-method.html:123:1 (initialize-sfn_data-method.Rd:62): Warning: missing </ul> before </div>
initialize-sfn_data_multi-method.html:51:1 (initialize-sfn_data_multi-method.Rd:12): Warning: missing </ul> before </div>
sfn_metrics.html:151:1 (sfn_metrics.Rd:84): Warning: <h3> anchor ".funs" already defined
show-sfn_data-method.html:47:1 (show-sfn_data-method.Rd:10): Warning: missing </ul> before </div>
show-sfn_data_multi-method.html:47:1 (show-sfn_data_multi-method.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cmc_psat.Rd’ ‘h-fun.R’ ‘mc-test.R’ ‘tshift.R’
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Maintainer: ‘Stuart K. Grange <stuart.grange@york.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
setup_mesos.html:90:1 (setup_mesos.Rd:38): Warning: missing </ul> before </div>
Found the following HTML validation problems:
embed_cat_prop_plot.html:84:1 (embed_cat_prop_plot.Rd:33): Warning: missing </ul> before </div>
embed_cat_table.html:69:1 (embed_cat_table.Rd:24): Warning: missing </ul> before </div>
embed_chr_table_html.html:59:1 (embed_chr_table_html.Rd:16): Warning: missing </ul> before </div>
make_link.list.html:115:1 (make_link.list.Rd:62): Warning: missing </ul> before </div>
Found the following HTML validation problems:
description.html:68:1 (description.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  method (Centofanti et al. (2021) <arXiv:2103.15224>) that aims to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sasfunclust.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:222:1 (inst/NEWS.Rd:99): Warning: missing </ul> before </div>
NEWS.html:113:1 (inst/NEWS.Rd:48): Warning: <h4> anchor "Other-improvements" already defined
NEWS.html:136:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "New-features+3A" already defined
NEWS.html:151:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "Other-improvements" already defined
NEWS.html:166:1 (inst/NEWS.Rd:75): Warning: <h4> anchor "New-features+3A" already defined
NEWS.html:180:1 (inst/NEWS.Rd:81): Warning: <h4> anchor "Other-improvements" already defined
NEWS.html:196:1 (inst/NEWS.Rd:89): Warning: <h4> anchor "New-features+3A" already defined
NEWS.html:207:1 (inst/NEWS.Rd:94): Warning: <h4> anchor "Other-improvements" already defined
Maintainer: ‘Steven Walker <steve.walker@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by"),
                      family = "Littell",
                      role = "aut"),
               person(family = "Milliken",
                      role = "aut"),
               person(family = "Stroup",
                      role = "aut"),
               person(family = "Wolfinger",
                      role = "aut"),
               person(given = c("modifications", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut"),
               person(given = "Steven",
                      family = "Walker",
                      role = c("aut", "cre"),
                      email = "steve.walker@utoronto.ca"))
as necessary.
Found the following HTML validation problems:
sas_engine.html:46:1 (sas_engine.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) gen.ds.Rd:43-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:50-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:64-65: Lost braces
    64 |    \item{the dependence parameter \code{dep} or the vector of dependence parameters \code{dep}. When missing, these coefficients are obtained from independent standard uniform sampling.
       |         ^
checkRd: (-1) gen.ds.Rd:66: Lost braces
    66 |    \item{the list \code{asy} of asymmetric weights \eqn{\beta_{i,b}} for \eqn{b \in B}  and \eqn{i \in b}. When missing, these coefficients are obtained from independent standard uniform sampling followed by renormalization in order to satisfy the sum-to-one constraints.}
       |         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_SpatRaster.Rd’ ‘clip_bands.Rd’ ‘get_band_names.Rd’
    ‘get_spatial_resolution.Rd’ ‘get_spectral_band_names.Rd’
    ‘merge_tiles.Rd’ ‘save_by_resolution.Rd’ ‘select_bands.Rd’
Maintainer: ‘Mo Huang <mohuangx@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SAVER-package.Rd’:
    https://doi.org/10.1038/s41592-018-0033-z
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
saws-internal.html:96:1 (saws-internal.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Tiago Santos <teixeiradossantos@tugraz.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) OTC.Rd:42: Lost braces; missing escapes or markup?
    42 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTC.Rd:83: Lost braces; missing escapes or markup?
    83 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTHist.Rd:29: Lost braces; missing escapes or markup?
    29 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) dOTC.Rd:72: Lost braces; missing escapes or markup?
    72 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Shift.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Viktoriya Krakovna <vkrakovna@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Viktoriya",
                    family = "Krakovna",
                    role = c("aut", "cre"),
                    email = "vkrakovna@gmail.com")
as necessary.

The Description field contains
  (2015), <arXiv:1506.02371>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
edge_density_plot.html:58:1 (edge_density_plot.Rd:16): Warning: missing </ul> before </div>
logposterior_plot.html:58:1 (logposterior_plot.Rd:16): Warning: missing </ul> before </div>
signal_size_plot.html:59:1 (signal_size_plot.Rd:17): Warning: missing </ul> before </div>
checkRd: (-1) setData.ReducedRankRegressions.Rd:14-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setData.ReducedRankRegressions.Rd:17-18: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Meiyue Wang <mwang024@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Meiyue",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "mwang024@ucr.edu"),
               person(given = "Shizhong",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Arash A. Amini <amini.aa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Arash", "A."),
                    family = "Amini",
                    role = c("aut", "cre"),
                    email = "amini.aa@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘sbmSDP-package.Rd’:
    \keyword{ 
      community detection
      stochastic block mo [TRUNCATED]
Maintainer: ‘Matthew Ludkin <m.ludkin1@lancaster.ac.uk>’

The Description field contains
  <doi:10.1080/10618600.2000.10474879>; Ludkin (2019) <arXiv:1909.09421>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘drawblock.dp.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
  File ‘sampler.dp.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
  File ‘sampler.rj.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Updated help pages with examples
    Updated conjugate model sampler
Maintainer: ‘Valerio Gherardi <vgherard@sissa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Valerio",
                    family = "Gherardi",
                    role = c("aut", "cre"),
                    email = "vgherard@sissa.it")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Frank D. Mann <frankdmann@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frank", "D."),
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "frankdmann@gmail.com")
as necessary.
Found the following HTML validation problems:
initialize_sciencebase_session.html:62:1 (initialize_sciencebase_session.Rd:18): Warning: missing </ul> before </div>
item_replace_files.html:75:1 (item_replace_files.Rd:27): Warning: missing </ul> before </div>
sbtools_GET.html:52:1 (sbtools_GET.Rd:13): Warning: missing </ul> before </div>
sbtools_POST.html:56:1 (sbtools_POST.Rd:15): Warning: missing </ul> before </div>
sbtools_PUT.html:56:1 (sbtools_PUT.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lee",
                      family = "Wilkinson",
                      role = "aut",
                      email = "leland.wilkinson@gmail.com"),
               person(given = "Anushka",
                      family = "Anand",
                      role = "aut"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "cre",
                      email = "simon.urbanek@r-project.org"))
as necessary.
License stub is invalid DCF.
Specified C++11: please drop specification unless essential
Maintainer: ‘Niloy Biswas <niloy_biswas@g.harvard.edu>’

The Description field contains
  <arXiv:2204.01668>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (ORCID: <https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Tingni Sun <tingni@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tingni",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "tingni@wharton.upenn.edu")
as necessary.
Found the following HTML validation problems:
deprecated-functions.html:68:1 (deprecated-functions.Rd:41): Warning: missing </ul> before </div>
dot-inheritParams.html:142:1 (dot-inheritParams.Rd:76): Warning: missing </ul> before </div>
plot_rand.html:84:1 (plot_rand.Rd:33): Warning: missing </ul> before </div>
print.sc.html:95:1 (print.sc.Rd:54): Warning: missing </ul> before </div>
summary.scdf.html:55:1 (summary.scdf.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
has_converged.html:56:1 (has_converged.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Xudong Han <hanxd1217@163.com>’

The Description field contains
  Thomas N. Kipf (2017) <arXiv:1609.02907v4>) to construct the gene-cell
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get.events.Rd:51: Lost braces
    51 |   code{\link[deSolve]{events}}
       |       ^
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Valentin",
                      family = "Rousson",
                      role = "aut",
                      email = "rousson@ifspm.unizh.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Yining Chen <y.chen101@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yining",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "y.chen101@lse.ac.uk"),
               person(given = "Richard",
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Ravi Selker <selker.ravi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Selker",
                    role = c("aut", "cre"),
                    email = "selker.ravi@gmail.com")
as necessary.
checkRd: (-1) scatterD3.Rd:209: Lost braces; missing escapes or markup?
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       | ^
checkRd: (-1) scatterD3.Rd:209: Lost braces
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       |                                              ^
Found the following HTML validation problems:
scatterD3-shiny.html:68:1 (scatterD3-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Uwe Ligges <ligges@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Uwe",
                      family = "Ligges",
                      role = c("aut", "cre"),
                      email = "ligges@statistik.tu-dortmund.de"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut"),
               person(given = "Sarah",
                      family = "Schnackenberg",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
scatterPlotMatrix-shiny.html:68:1 (scatterPlotMatrix-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Amit Frishberg <amfrishberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amit",
                      family = "Frishberg",
                      role = c("aut", "cre"),
                      email = "amfrishberg@gmail.com"),
               person(given = "Naama",
                      family = "Peshes-Yaloz",
                      role = "aut"),
               person(given = "Irit",
                      family = "Gat-Viks",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blair Drummond <blair.robert.drummond@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Blair",
                      family = "Drummomd",
                      role = "aut"),
               person(given = "Mathieu",
                      family = "Dextraze",
                      role = "ctb"),
               person(given = "Blair",
                      family = "Drummond",
                      role = "cre",
                      email = "blair.robert.drummond@gmail.com"))
as necessary.
Maintainer: ‘Xin Shao<xin_shao@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xin",
                    family = "Shao",
                    role = c("aut", "cre"),
                    email = "xin_shao@zju.edu.cn")
as necessary.
Maintainer: ‘Alexander Marx <amarx@mpi-inf.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Marx",
                    role = c("aut", "cre"),
                    email = "amarx@mpi-inf.mpg.de")
as necessary.
Maintainer: ‘Alicja Wolny-Dominiak<woali@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Adamic",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "woali@ue.katowice.pl"))
as necessary.
Maintainer: ‘"Yonas Ghebremichael Weldeselassie" <yonas.weldeselassie@open.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yonas", "Ghebremichael"),
                      family = "Weldeselassie",
                      role = "aut"),
               person(given = "Heather",
                      family = "Whitaker",
                      role = "aut"),
               person(given = "Paddy",
                      family = "Farrington",
                      role = "aut"),
               person(given = c("\"Yonas", "Ghebremichael"),
                      family = "Weldeselassie\"",
                      role = "cre",
                      email = "yonas.weldeselassie@open.ac.uk"))
as necessary.
Found the following HTML validation problems:
Logger.html:171:1 (Logger.Rd:120): Warning: <h5> anchor "Usage" already defined
Logger.html:183:1 (Logger.Rd:130): Warning: <h5> anchor "Arguments" already defined
Logger.html:226:1 (Logger.Rd:159): Warning: <h5> anchor "Usage" already defined
Logger.html:232:1 (Logger.Rd:163): Warning: <h5> anchor "Arguments" already defined
Logger.html:259:1 (Logger.Rd:180): Warning: <h5> anchor "Usage" already defined
Logger.html:265:1 (Logger.Rd:184): Warning: <h5> anchor "Arguments" already defined
Logger.html:292:1 (Logger.Rd:201): Warning: <h5> anchor "Usage" already defined
Logger.html:298:1 (Logger.Rd:205): Warning: <h5> anchor "Arguments" already defined
Logger.html:323:1 (Logger.Rd:220): Warning: <h5> anchor "Usage" already defined
Logger.html:329:1 (Logger.Rd:224): Warning: <h5> anchor "Arguments" already defined
Logger.html:353:1 (Logger.Rd:238): Warning: <h5> anchor "Usage" already defined
Logger.html:359:1 (Logger.Rd:242): Warning: <h5> anchor "Arguments" already defined
LoggerNull.html:111:1 (LoggerNull.Rd:64): Warning: <h5> anchor "Usage" already defined
LoggerNull.html:117:1 (LoggerNull.Rd:68): Warning: <h5> anchor "Arguments" already defined
LoggerNull.html:140:1 (LoggerNull.Rd:81): Warning: <h5> anchor "Usage" already defined
LoggerNull.html:146:1 (LoggerNull.Rd:85): Warning: <h5> anchor "Arguments" already defined
LoggerNull.html:169:1 (LoggerNull.Rd:98): Warning: <h5> anchor "Usage" already defined
LoggerNull.html:175:1 (LoggerNull.Rd:102): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
displayFailure.html:46:1 (displayFailure.Rd:10): Warning: missing </ul> before </div>
displaySuccess.html:50:1 (displaySuccess.Rd:12): Warning: missing </ul> before </div>
print.scdensity.html:52:1 (print.scdensity.Rd:12): Warning: missing </ul> before </div>
print.summary.scdensity.html:51:1 (print.summary.scdensity.Rd:12): Warning: missing </ul> before </div>
summary.scdensity.html:52:1 (summary.scdensity.Rd:12): Warning: missing </ul> before </div>
'library' or 'require' calls not declared from:
  ‘doSNOW’ ‘foreach’ ‘iterators’ ‘reshape’ ‘rlecuyer’ ‘snow’
Found the following HTML validation problems:
session_by_treatment.html:56:1 (session_by_treatment.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nap.R’ ‘randomization_test.R’ ‘scdtb.R’
Found the following HTML validation problems:
dot-error_message.html:70:1 (dot-error_message.Rd:26): Warning: missing </ul> before </div>
dot-shared-parameters.html:40:1 (dot-shared-parameters.Rd:7): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.MultivariateFormula.html:52:1 (print.MultivariateFormula.Rd:12): Warning: missing </ul> before </div>
print.SCGLR.html:51:1 (print.SCGLR.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Daisuke Murakami <dmuraka@ism.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daisuke",
                      family = "Murakami",
                      role = c("cre", "aut"),
                      email = "dmuraka@ism.ac.jp"),
               person(given = "Narumasa",
                      family = "Tsutsumida",
                      role = "ctb"),
               person(given = "Takahiro",
                      family = "Yoshida",
                      role = "ctb"),
               person(given = "Tomoki",
                      family = "Nakaya",
                      role = "ctb"),
               person(given = "Lu",
                      family = "Binbin",
                      role = "ctb"))
as necessary.

The Description field contains
  <arXiv:1905.00266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jeffrey A. Dahlke <jeff.dahlke.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "A."),
                    family = "Dahlke",
                    role = c("aut", "cre"),
                    email = "jeff.dahlke.phd@gmail.com")
as necessary.
Found the following HTML validation problems:
print.html:44:1 (print.Rd:9): Warning: missing </ul> before </div>
Found the following HTML validation problems:
format_authors.html:46:1 (format_authors.Rd:10): Warning: missing </ul> before </div>
tidy_id.html:48:1 (tidy_id.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Stuart Baumann <Stuart@StuartBaumann.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stuart",
                      family = "Baumann",
                      role = c("aut", "cre"),
                      email = "stuart@stuartbaumann.com"),
               person(given = "Margaryta",
                      family = "Klymak",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
scico_data.html:52:1 (scico_data.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Nathan Taback <nathan.taback@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nathan",
                    family = "Taback",
                    role = c("aut", "cre"),
                    email = "nathan.taback@utoronto.ca")
as necessary.
Maintainer: ‘Ashraf Uddin <mdaakib18@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashraf",
                    family = "Uddin",
                    role = c("aut", "cre"),
                    email = "mdaakib18@gmail.com")
as necessary.
Maintainer: ‘Ze Zhang <Ze.Zhang@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ze",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "ze.zhang@utsouthwestern.edu")
as necessary.
Maintainer: ‘Manuel Morales <Manuel.A.Morales@williams.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Manuel",
                      family = "Morales",
                      role = c("aut", "cre"),
                      email = "mmorales@williams.edu"),
               person(given = c("with", "code", "developed", "by", "the", "R", "Development", "Core"),
                      family = "Team",
                      role = "aut"),
               person(given = c("with", "general", "advice", "from", "the", "R-help", "listserv"),
                      family = "community",
                      role = "aut"),
               person(given = c("especially", "Duncan"),
                      family = "Murdoch.",
                      role = "aut"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/sciRmdTheme
which should likely be
  https://github.com/oobianom/sciRmdTheme/issues
instead.
Maintainer: ‘Duc Tran <duct@nevada.unr.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Maintainer: ‘Wenlong Ren <wenlongren@ntu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wenlong",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "wenlongren@ntu.edu.cn")
as necessary.
Maintainer: ‘Shota Ochi <shotaochi1990@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecgca102.Rd’:
    https://doi.org/10.13026/C2X30H
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jaejoon",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "jjsong2@mdanderson.org")
as necessary.
Maintainer: ‘Ed Merkle <merklee@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ed",
                    family = "Merkle",
                    role = c("aut", "cre"),
                    email = "merklee@missouri.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.casestudy.html:51:1 (print.casestudy.Rd:12): Warning: missing </ul> before </div>
print.mcstudy.html:51:1 (print.mcstudy.Rd:12): Warning: missing </ul> before </div>
summary.casestudy.html:51:1 (summary.casestudy.Rd:12): Warning: missing </ul> before </div>
summary.mcstudy.html:51:1 (summary.mcstudy.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_relative_skill.html:92:1 (add_relative_skill.Rd:41): Warning: missing </ul> before </div>
clean_forecast.html:58:1 (clean_forecast.Rd:17): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [ctb] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [ctb] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces
    19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.}
       |                                                                                                    ^
checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.}
       |                                                                                                                                                                                   ^
checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.}
       |                                                                               ^
Maintainer: ‘Debsurya De <debsurya001@gmail.com>’

The Description field contains
  <arXiv:1909.04024> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chakkrit Tantithamthavorn <kla@chakkrit.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chakkrit",
                    family = "Tantithamthavorn",
                    role = c("aut", "cre"),
                    email = "kla@chakkrit.com")
as necessary.
Maintainer: ‘Daniela M. Witten <dwitten@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = c("aut", "cre"),
                      email = "dwitten@uw.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Marlene Marchena <marchenamarlene@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Marchena",
                    role = c("aut", "cre"),
                    email = "marchenamarlene@gmail.com")
as necessary.

The Description field contains
  <arXiv:1009.3977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Peidli <stefanpeidli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefan",
                    family = "Peidli",
                    role = c("aut", "cre"),
                    email = "stefanpeidli@gmail.com")
as necessary.
Found the following HTML validation problems:
dot-inherit_scplot.html:148:1 (dot-inherit_scplot.Rd:74): Warning: missing </ul> before </div>
Maintainer: ‘Julien Boelaert <jubo.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Boelaert",
                    role = c("aut", "cre"),
                    email = "jubo.stats@gmail.com")
as necessary.
Maintainer: ‘Qi Zhang <karlmzhang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pengsheng",
                      family = "Ji",
                      role = "aut"),
               person(given = "Jiashun",
                      family = "Jin",
                      role = "aut"),
               person(given = "Qi",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "karlmzhang@gmail.com"))
as necessary.
Maintainer: ‘Elad Romanov <elad.romanov@gmail.com>’

The Description field contains
  appear). <arXiv:2009.12297>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
reset_array.html:50:1 (reset_array.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Holger Schwender <holger.schw@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Holger",
                      family = "Schwender",
                      role = c("aut", "cre"),
                      email = "holger.schw@gmx.de"),
               person(given = c("with", "a", "contribution", "of", "Arno"),
                      family = "Fritsch",
                      role = "aut"))
as necessary.
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
Maintainer: ‘Sagie Gur-Ari <sagiegurari@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: docs/api.md
    From: README.md
  URI: .github/CONTRIBUTING.md
    From: README.md
checkRd: (-1) scriptloc.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get location of script in a fashion analagous to ${BASH_SOURCE[0]}}
       |                                                          ^
Found the following HTML validation problems:
script_file_get.html:49:1 (script_file_get.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Raphaël Bonnet <raphael.bonnet@univ-cotedazur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Raphael",
                      family = "Bonnet",
                      role = c("aut", "cre")),
               person(given = "Marion",
                      family = "Guernoté",
                      role = "ctb"),
               person(given = "Terry",
                      family = "Gouin",
                      role = "ctb"),
               person(given = "Maxime",
                      family = "Laurens",
                      role = "ctb"),
               person(given = "Thibault",
                      family = "Meekel",
                      role = "ctb"),
               person(given = "Jean-François",
                      family = "Peyron",
                      role = c("aut", "ths")),
               person(given = "Raphaël",
                      family = "Bonnet",
                      role = "cre",
                      email = "raphael.bonnet@univ-cotedazur.fr"))
as necessary.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Qian Yang <bioqianyang@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qian",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "bioqianyang@163.com")
as necessary.
Found the following files/directories:
  ‘untitled_consensus_cluster’
Maintainer: ‘Conor Neilson <condwanaland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conor",
                    family = "Neilson",
                    role = c("aut", "cre"),
                    email = "condwanaland@gmail.com")
as necessary.
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
cost_func.html:58:1 (cost_func.Rd:16): Warning: missing </ul> before </div>
update_C.html:54:1 (update_C.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Osorio <dcosorioh@utexas.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(scUtils)
  > 
  > test_check("scUtils")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plots.R:59:3'): all kinds of colnames are allowed ────────────
  p$labels not equal to list(y = "Dim2", x = "Dim1", colour = "expression").
  Attributes: < names for target but not for current >
  Attributes: < Length mismatch: comparison on first 0 components >
  Length mismatch: comparison on first 2 components
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
is_wholenumber.html:54:1 (is_wholenumber.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Lilun Du <dulilun@ust.hk>’

The Description field contains
  Aggregation", <arXiv:2002.11992>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                  ^
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                                         ^
checkRd: (-1) geom_flat_violin.Rd:7: Lost braces
     7 | url{https://gist.github.com/dgrtwo/eb7750e74997891d7c20}
       |    ^
Maintainer: ‘John R. Ortiz <jrortizt@unal.edu.co>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘plot.Rd’:
    https://doi.org/10.25573/data.13118426.v2
Found the following HTML validation problems:
common_arguments.html:101:1 (common_arguments.Rd:47): Warning: missing </ul> before </div>
print.sdc_distinct_ids.html:70:1 (print.sdc_distinct_ids.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
distributeDraws_cpp.html:65:1 (distributeDraws_cpp.Rd:18): Warning: missing </ul> before </div>
distributeRandom_cpp.html:57:1 (distributeRandom_cpp.Rd:14): Warning: missing </ul> before </div>
randSample_cpp.html:64:1 (randSample_cpp.Rd:18): Warning: missing </ul> before </div>
sampleDonor_cpp.html:80:1 (sampleDonor_cpp.Rd:30): Warning: missing </ul> before </div>
setRisk_cpp.html:61:1 (setRisk_cpp.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) sdc_extabs.Rd:59: Lost braces
    59 | (including ]code{forcelist} variables) that can be used to form tables.}
       |                 ^
Found the following HTML validation problems:
smooth_raster.html:96:1 (smooth_raster.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print-method.html:51:1 (print-method.Rd:13): Warning: missing </ul> before </div>
print.sdcProblem-method.html:51:1 (print.sdcProblem-method.Rd:13): Warning: missing </ul> before </div>
show.sdcProblem-method.html:47:1 (show.sdcProblem-method.Rd:11): Warning: missing </ul> before </div>
summary.sdcProblem-method.html:51:1 (summary.sdcProblem-method.Rd:13): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Stefano Maria Iacus <siacus@iq.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stefano", "Maria"),
                    family = "Iacus",
                    role = c("aut", "cre"),
                    email = "siacus@iq.harvard.edu")
as necessary.
File ‘sde/libs/sde.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>’

The BugReports field in DESCRIPTION has
  https://github.com/egarpor/sdetorus
which should likely be
  https://github.com/egarpor/sdetorus/issues
instead.
Maintainer: ‘Takahiro Shimada <taka.shimada@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takahiro",
                    family = "Shimada",
                    role = c("aut", "cre"),
                    email = "taka.shimada@gmail.com")
as necessary.
Found the following HTML validation problems:
coef.sdmTMB.html:60:1 (coef.sdmTMB.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Junyue Wu <wu.junyue.p1@dc.tohoku.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junyue",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "wu.junyue.p1@dc.tohoku.ac.jp")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sdpdth.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) msdpd.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperpar.Rd:17: Lost braces
    17 | \item{c}{denotes the expected range of eqn{f} .}
       |                                           ^
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
assert_dtc_fmt.html:48:1 (assert_dtc_fmt.Rd:10): Warning: missing </ul> before </div>
ct_spec_vars.html:54:1 (ct_spec_vars.Rd:11): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assign_meta_data.Rd’
Found the following HTML validation problems:
dm.html:61:1 (dm.Rd:17): Warning: missing </ul> before </div>
edc_xx.html:62:1 (edc_xx.Rd:18): Warning: missing </ul> before </div>
spec_XX.html:66:1 (spec_XX.Rd:19): Warning: missing </ul> before </div>
spec_codelists.html:60:1 (spec_codelists.Rd:16): Warning: missing </ul> before </div>
spec_datasets.html:61:1 (spec_datasets.Rd:17): Warning: missing </ul> before </div>
vd.html:58:1 (vd.Rd:16): Warning: missing </ul> before </div>
xx_no_meta_data.html:75:1 (xx_no_meta_data.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Ali Uenlue <ali.uenlue@icloud.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SDT-package.Rd’:
    https://doi.org/10.1007/978-1-4899-2271-7
    https://doi.org/10.1207/S15327965PLI1104_01
    https://doi.org/10.3389/fpsyg.2016.00272
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘internalization.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘plot.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘plot.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘print.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘print.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘simplex.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘summary.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut"))
as necessary.
Maintainer: ‘Jocelyn Chi <jocetchi@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Hsiao, Lin, Wang, Lee, Lu, and Tzeng. (2021+) <arXiv:2105.03228>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wei Qian <weiqian@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "weiqian@stat.umn.edu")
as necessary.
Running examples in ‘seAMLess-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ternaryPlot
> ### Title: Given the immune compositions (ICs) of bulk-RNA samples, this
> ###   function creates a ternary plot similar to ALOT tube from EuroFlow
> ###   analysis and Figure 1E of our paper.
> ### Aliases: ternaryPlot
> 
> ### ** Examples
> 
> library(seAMLess)
> 
> data(minRes)
> ternaryPlot(minRes)
Error in loadNamespace(x) : there is no package called ‘ggtern’
Calls: ternaryPlot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘series.R’
Found the following HTML validation problems:
print.monthglm.html:51:1 (print.monthglm.Rd:12): Warning: missing </ul> before </div>
print.summary.Cosinor.html:51:1 (print.summary.Cosinor.Rd:12): Warning: missing </ul> before </div>
print.summary.monthglm.html:52:1 (print.summary.monthglm.Rd:13): Warning: missing </ul> before </div>
print.summary.nscosinor.html:52:1 (print.summary.nscosinor.Rd:13): Warning: missing </ul> before </div>
rinvgamma.html:49:1 (rinvgamma.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_diagram_by_level.html:59:1 (create_diagram_by_level.Rd:16): Warning: missing </ul> before </div>
crps_aux.html:51:1 (crps_aux.Rd:12): Warning: missing </ul> before </div>
crps_aux_esc.html:51:1 (crps_aux_esc.Rd:12): Warning: missing </ul> before </div>
delete_redundant_files.html:46:1 (delete_redundant_files.Rd:10): Warning: missing </ul> before </div>
download_chirps_monthly_high.html:58:1 (download_chirps_monthly_high.Rd:20): Warning: missing </ul> before </div>
download_chirps_monthly_low.html:63:1 (download_chirps_monthly_low.Rd:23): Warning: missing </ul> before </div>
modify_dt_map_plotting.html:50:1 (modify_dt_map_plotting.Rd:12): Warning: missing </ul> before </div>
season_strings_to_int.html:46:1 (season_strings_to_int.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Isabella Bitetto <bitetto@coispa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabella",
                      family = "Bitetto",
                      role = c("aut", "cre"),
                      email = "bitetto@coispa.it",
                      comment = "COISPA"),
               person(given = "Loretta",
                      family = "Malvarosa",
                      role = "aut",
                      comment = "NISEA"),
               person(given = c("Maria", "Teresa"),
                      family = "Spedicato",
                      role = "aut",
                      comment = "COISPA"),
               person(given = "Ralf",
                      family = "Doering",
                      role = "aut",
                      comment = "THUENEN"),
               person(given = "Joerg",
                      family = "Berkenhagen",
                      role = "aut",
                      comment = "THUENEN"))
as necessary.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.

The Description field contains
  <arXiv:1105.2334v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
share_secret_with_key.html:58:1 (share_secret_with_key.Rd:16): Warning: missing </ul> before </div>
share_secret_with_key1.html:58:1 (share_secret_with_key1.Rd:16): Warning: missing </ul> before </div>
store_secret_with_key.html:58:1 (store_secret_with_key.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Danielle Quinn <danielle.quinn@mun.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danielle",
                    family = "Quinn",
                    role = c("aut", "cre"),
                    email = "danielle.quinn@mun.ca")
as necessary.
Found the following HTML validation problems:
initialize_ss.html:50:1 (initialize_ss.Rd:12): Warning: missing </ul> before </div>
matmult3d.html:46:1 (matmult3d.Rd:10): Warning: missing </ul> before </div>
pct.html:46:1 (pct.Rd:10): Warning: missing </ul> before </div>
substr_r.html:50:1 (substr_r.Rd:12): Warning: missing </ul> before </div>
ts_c.html:52:1 (ts_c.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Jae Keun Yoo <peter.yoo@ewha.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae", "Keun"),
                      family = "Yoo",
                      role = c("aut", "cre"),
                      email = "peter.yoo@ewha.ac.kr"),
               person(given = "Bo-Young",
                      family = "Kim",
                      role = "aut"))
as necessary.
checkRd: (-1) seedCCA.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{u}{numeric, maximum number of projections. The default is 10. This is used for \code{type="seed1"}, \code{type="seed2"} and {tyepe="pls"}.}
       |                                                                                                                                   ^
Found the following HTML validation problems:
print.textmodel_lda.html:51:1 (print.textmodel_lda.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
assert_flag_or_scalar_integerish.html:51:1 (assert_flag_or_scalar_integerish.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SE.EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘SE.EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘SE.EQ.dissolution.profiles.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Found the following HTML validation problems:
logspec.dist.html:78:1 (logspec.dist.Rd:39): Warning: <h3> anchor "_sec_note" already defined
sh.html:94:1 (sh.Rd:65): Warning: <h3> anchor "_sec_note" already defined
spectro.html:346:1 (spectro.Rd:166): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
DynProg_algo_cpp.html:51:1 (DynProg_algo_cpp.Rd:12): Warning: missing </ul> before </div>
Gmixt_algo_cpp.html:70:1 (Gmixt_algo_cpp.Rd:22): Warning: missing </ul> before </div>
Gmixt_simultanee_fullcpp.html:62:1 (Gmixt_simultanee_fullcpp.Rd:18): Warning: missing </ul> before </div>
apply_rowSums.html:50:1 (apply_rowSums.Rd:12): Warning: missing </ul> before </div>
arma_repmat.html:54:1 (arma_repmat.Rd:14): Warning: missing </ul> before </div>
augment.html:50:1 (augment.Rd:12): Warning: missing </ul> before </div>
colsums_sapply.html:62:1 (colsums_sapply.Rd:18): Warning: missing </ul> before </div>
cumsum_cpp.html:46:1 (cumsum_cpp.Rd:10): Warning: missing </ul> before </div>
likelihood.html:50:1 (likelihood.Rd:12): Warning: missing </ul> before </div>
prep_segm_HMM.html:50:1 (prep_segm_HMM.Rd:12): Warning: missing </ul> before </div>
prep_segm_shiftfit.html:50:1 (prep_segm_shiftfit.Rd:12): Warning: missing </ul> before </div>
segclust_internal.html:97:1 (segclust_internal.Rd:43): Warning: missing </ul> before </div>
stat_segm_HMM.html:58:1 (stat_segm_HMM.Rd:16): Warning: missing </ul> before </div>
stat_segm_shiftfit.html:58:1 (stat_segm_shiftfit.Rd:16): Warning: missing </ul> before </div>
subsample_rename.html:55:1 (subsample_rename.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Eleni Ioanna Delatola <eldelatola@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eleni", "Ioanna"),
                      family = "Delatola",
                      role = c("aut", "cre"),
                      email = "eldelatola@yahoo.gr"),
               person(given = "Emilie",
                      family = "Lebarbier",
                      role = "aut"),
               person(given = "Tristan",
                      family = "Mary-Huard",
                      role = "aut"),
               person(given = "Francois",
                      family = "Radvanyi",
                      role = "aut"),
               person(given = "Stephane",
                      family = "Robin",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Wong",
                      role = "aut"))
as necessary.
Maintainer: ‘Rainer Machne <raim@tbi.univie.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Machne",
                      role = c("aut", "cre"),
                      email = "raim@tbi.univie.ac.at"),
               person(given = c("Douglas", "B."),
                      family = "Murray",
                      role = "aut"),
               person(given = c("Peter", "F."),
                      family = "Stadler",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ash.html:49:1 (ash.Rd:10): Warning: missing </ul> before </div>
backtrace.html:67:1 (backtrace.Rd:21): Warning: missing </ul> before </div>
log_1.html:47:1 (log_1.Rd:10): Warning: missing </ul> before </div>
plot.segments.html:85:1 (plot.segments.Rd:35): Warning: missing </ul> before </div>
plot.timeseries.html:74:1 (plot.timeseries.Rd:28): Warning: missing </ul> before </div>
plotSegmentation.html:80:1 (plotSegmentation.Rd:30): Warning: missing </ul> before </div>
plotdev.html:64:1 (plotdev.Rd:20): Warning: missing </ul> before </div>
print.segments.html:51:1 (print.segments.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Thales Mello <thalesmello@gmail.com>’

The Description field contains
  Leonardi (2018) <arXiv:1501.01756>. The Berlin weather sample dataset
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michelle Picoli <mipicoli@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plot.html:198:1 (plot.Rd:105): Warning: missing </ul> before </div>
Maintainer: ‘Danilo C Vieira <vieiradc@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Danilo", "C"),
                      family = "Vieira",
                      role = c("aut", "cre"),
                      email = "vieiradc@yahoo.com.br"),
               person(given = "Gustavo",
                      family = "Fonseca",
                      role = "aut",
                      email = "gfonseca.unifesp@gmail.com"),
               person(given = c("Fabio", "Cop"),
                      family = "Ferreira",
                      role = "aut",
                      email = "fabiocferreira.unifesp@gmail.com"),
               person(given = c("with", "contributions", "from", "Marco", "Colossi"),
                      family = "Brustolin.",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot.SEIRfansy.html:56:1 (plot.SEIRfansy.Rd:14): Warning: missing </ul> before </div>
plot.SEIRfansyPredict.html:56:1 (plot.SEIRfansyPredict.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Qingyuan Zhao <qingyzhao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hera",
                      family = "He",
                      role = "aut"),
               person(given = "Murat",
                      family = "Erdogdu",
                      role = "aut"),
               person(given = "Qingyuan",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "qingyzhao@gmail.com"))
as necessary.
Maintainer: ‘Heewon Jeon <madjakarta@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Heewon",
                    family = "Jeon",
                    role = c("aut", "cre"),
                    email = "madjakarta@gmail.com")
as necessary.

The Description field contains
  Sejong(http://www.sejong.or.kr/) corpus and
  Hannanum(http://semanticweb.kaist.ac.kr/home/index.php/HanNanum)
Please enclose URLs in angle brackets (<...>).
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘selcorr.R’
Maintainer: ‘Xuefei Mi <mi_xue_fei@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuefei",
                      family = "Mi",
                      role = c("aut", "cre"),
                      email = "mi_xue_fei@hotmail.com"),
               person(given = "Jose",
                      family = "Marulanda",
                      role = "aut"),
               person(given = c("H.", "Friedrich"),
                      family = "Utz",
                      role = "aut"),
               person(given = c("Albrecht", "E."),
                      family = "Melchinger",
                      role = "aut",
                      comment = "Project contact person: Melchinger@uni-hohenheim.de"))
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ryan",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = c("aut", "cre"),
                      email = "tibs@stanford.edu"),
               person(given = "Jonathan",
                      family = "Taylor",
                      role = "aut"),
               person(given = "Joshua",
                      family = "Loftus",
                      role = "aut"),
               person(given = "Stephen",
                      family = "Reid",
                      role = "aut"),
               person(given = "Jelena",
                      family = "Markovic",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:393:1 (inst/NEWS.Rd:274): Warning: missing </ul> before </div>
NEWS.html:67:1 (inst/NEWS.Rd:37): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:96:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:114:1 (inst/NEWS.Rd:75): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:127:1 (inst/NEWS.Rd:85): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:146:1 (inst/NEWS.Rd:99): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:166:1 (inst/NEWS.Rd:115): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:205:1 (inst/NEWS.Rd:144): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:221:1 (inst/NEWS.Rd:155): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:236:1 (inst/NEWS.Rd:165): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:258:1 (inst/NEWS.Rd:181): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:299:1 (inst/NEWS.Rd:211): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:328:1 (inst/NEWS.Rd:231): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:351:1 (inst/NEWS.Rd:247): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:368:1 (inst/NEWS.Rd:259): Warning: <h4> anchor "NEW-FEATURES" already defined
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.list.selenider_elements.Rd’ ‘elem_ancestors.Rd’ ‘elem_attr.Rd’
    ‘elem_cache.Rd’ ‘elem_click.Rd’ ‘elem_css_property.Rd’
    ‘elem_equal.Rd’ ‘elem_expect.Rd’ ‘elem_expect_all.Rd’
    ‘elem_filter.Rd’ ‘elem_flatten.Rd’ ‘elem_hover.Rd’ ‘elem_name.Rd’
    ‘elem_scroll_to.Rd’ ‘elem_select.Rd’ ‘elem_size.Rd’ ‘elem_text.Rd’
    ‘find_each_element.Rd’ ‘find_element.Rd’ ‘find_elements.Rd’
    ‘get_actual_element.Rd’ ‘s.Rd’
Found the following HTML validation problems:
chromote_options.html:132:1 (chromote_options.Rd:68): Warning: missing </ul> before </div>
Found the following HTML validation problems:
SccsData-class.html:53:1 (SccsData-class.Rd:16): Warning: missing </ul> before </div>
SccsIntervalData-class.html:54:1 (SccsIntervalData-class.Rd:16): Warning: missing </ul> before </div>
migrateDataModel.html:57:1 (migrateDataModel.Rd:14): Warning: missing </ul> before </div>
saveExposuresOutcomeList.html:50:1 (saveExposuresOutcomeList.Rd:12): Warning: missing </ul> before </div>
saveSccsAnalysisList.html:50:1 (saveSccsAnalysisList.Rd:12): Warning: missing </ul> before </div>
uploadResults.html:91:1 (uploadResults.Rd:41): Warning: missing </ul> before </div>
Maintainer: ‘Jie Qiao <qiaojie2004@vip.qq.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
mmpcAnm.html:46:1 (mmpcAnm.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjoern",
                    family = "Bornkamp",
                    role = c("aut", "cre"),
                    email = "bbnkmp@mail.de")
as necessary.
Found the following HTML validation problems:
validate_tab_name.html:46:1 (validate_tab_name.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Divyansh Agarwal <divyansh@upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Divyansh", "Agarwal", "Nancy", "R.", "Zhang"),
                      family = "<nzh@wharton.upenn.edu>",
                      role = "aut",
                      email = "nzh@wharton.upenn.edu"),
               person(given = "Divyansh",
                      family = "Agarwal",
                      role = "cre",
                      email = "divyansh@upenn.edu"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marko",
                    family = "Robnik-Sikonja",
                    role = c("aut", "cre"),
                    email = "marko.robnik@fri.uni-lj.si")
as necessary.
Maintainer: ‘Yiran Zhang <yiz038@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yiran",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "yiz038@health.ucsd.edu")
as necessary.

The Description field contains
  Zhang, Y. and Xu, R. (2022) <arXiv:2204.10426>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee15239@gmail.com"),
               person(given = "Catherine",
                      family = "Lee",
                      role = "aut"),
               person(given = "Danilo",
                      family = "Alvares",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Haneuse",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
old.functions.html:54:1 (old.functions.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Jinhua Su <944866518@qq.com>’

The Description field contains
  method<arXiv:2108.07928> is an improved method of two-step NR iteration
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Agnieszka Listwon-Krol <krol@lunenfeld.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Agnieszka",
                      family = "Listwon-Krol",
                      role = c("aut", "cre"),
                      email = "krol@lunenfeld.ca"),
               person(given = "Philippe",
                      family = "Saint-Pierre",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
compute_itcriteria_weights.html:47:1 (compute_itcriteria_weights.Rd:11): Warning: missing </ul> before </div>
cor_rsq.html:58:1 (cor_rsq.Rd:16): Warning: missing </ul> before </div>
dot_component_mm.html:50:1 (dot_component_mm.Rd:12): Warning: missing </ul> before </div>
dot_subcomponent_mm.html:54:1 (dot_subcomponent_mm.Rd:14): Warning: missing </ul> before </div>
esc_node.html:46:1 (esc_node.Rd:10): Warning: missing </ul> before </div>
extract_bootstrapped_values.html:58:1 (extract_bootstrapped_values.Rd:16): Warning: missing </ul> before </div>
extract_mm_coding.html:46:1 (extract_mm_coding.Rd:10): Warning: missing </ul> before </div>
extract_mm_edge_value.html:58:1 (extract_mm_edge_value.Rd:16): Warning: missing </ul> before </div>
extract_mm_edges.html:58:1 (extract_mm_edges.Rd:16): Warning: missing </ul> before </div>
extract_mm_nodes.html:54:1 (extract_mm_nodes.Rd:14): Warning: missing </ul> before </div>
get_global_htmt_style.html:50:1 (get_global_htmt_style.Rd:12): Warning: missing </ul> before </div>
get_global_style.html:50:1 (get_global_style.Rd:12): Warning: missing </ul> before </div>
get_mm_edge_style.html:54:1 (get_mm_edge_style.Rd:14): Warning: missing </ul> before </div>
get_mm_node_style.html:46:1 (get_mm_node_style.Rd:10): Warning: missing </ul> before </div>
predict_DA.html:56:1 (predict_DA.Rd:15): Warning: missing </ul> before </div>
predict_EA.html:56:1 (predict_EA.Rd:15): Warning: missing </ul> before </div>
print.seminr_pls_mga.html:55:1 (print.seminr_pls_mga.Rd:14): Warning: missing </ul> before </div>
report_missing.html:46:1 (report_missing.Rd:10): Warning: missing </ul> before </div>
seminr_theme_get.html:50:1 (seminr_theme_get.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
CompC.html:73:1 (CompC.Rd:25): Warning: missing </ul> before </div>
Distance.html:50:1 (Distance.Rd:12): Warning: missing </ul> before </div>
Longfun.html:58:1 (Longfun.Rd:16): Warning: missing </ul> before </div>
SearchIndicate.html:50:1 (SearchIndicate.Rd:12): Warning: missing </ul> before </div>
genData.html:46:1 (genData.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
gen_userp.html:202:1 (gen_userp.Rd:68): Warning: <h4> anchor "+E2+80+98gen_userp+E2+80+99" already defined
gen_userp.html:217:1 (gen_userp.Rd:81): Warning: <h4> anchor "+E2+80+98gen_sem_out_userp+E2+80+99" already defined
checkRd: (-1) NRW.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NRW.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:57-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:31-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:47: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  convert2igraph.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Unknown package ‘spreadr’ in Rd xrefs
Found the following HTML validation problems:
anova-lgc-method.html:51:1 (anova-lgc-method.Rd:12): Warning: missing </ul> before </div>
summary-lgc-method.html:51:1 (summary-lgc-method.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
checkBounded.html:58:1 (checkBounded.Rd:16): Warning: missing </ul> before </div>
checkEllipsis.html:46:1 (checkEllipsis.Rd:10): Warning: missing </ul> before </div>
checkPositive.html:50:1 (checkPositive.Rd:12): Warning: missing </ul> before </div>
checkPositiveDefinite.html:54:1 (checkPositiveDefinite.Rd:14): Warning: missing </ul> before </div>
checkSquare.html:50:1 (checkSquare.Rd:12): Warning: missing </ul> before </div>
checkSymmetricSquare.html:50:1 (checkSymmetricSquare.Rd:12): Warning: missing </ul> before </div>
semPower.showPlot.html:62:1 (semPower.showPlot.Rd:18): Warning: missing </ul> before </div>
summary.semPower.aPriori.html:51:1 (summary.semPower.aPriori.Rd:12): Warning: missing </ul> before </div>
summary.semPower.compromise.html:51:1 (summary.semPower.compromise.Rd:12): Warning: missing </ul> before </div>
summary.semPower.postHoc.html:51:1 (summary.semPower.postHoc.Rd:12): Warning: missing </ul> before </div>
validateInput.html:158:1 (validateInput.Rd:78): Warning: missing </ul> before </div>
Found the following HTML validation problems:
split_input.html:46:1 (split_input.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.semtree.html:53:1 (coef.semtree.Rd:14): Warning: missing </ul> before </div>
diversityMatrix.html:54:1 (diversityMatrix.Rd:14): Warning: missing </ul> before </div>
fitSubmodels.html:74:1 (fitSubmodels.Rd:28): Warning: missing </ul> before </div>
kl.html:59:1 (kl.Rd:18): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
semVer.html:121:1 (semVer.Rd:79): Warning: <h5> anchor "Usage" already defined
semVer.html:127:1 (semVer.Rd:83): Warning: <h5> anchor "Arguments" already defined
semVer.html:143:1 (semVer.Rd:93): Warning: <h5> anchor "Returns" already defined
semVer.html:150:1 (semVer.Rd:96): Warning: <h5> anchor "Examples" already defined
semVer.html:168:1 (semVer.Rd:109): Warning: <h5> anchor "Usage" already defined
semVer.html:174:1 (semVer.Rd:113): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
print.sg_mail.html:51:1 (print.sg_mail.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) sendmail_options.Rd:32-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:38-39: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
model_helper.html:54:1 (model_helper.Rd:14): Warning: missing </ul> before </div>
plot.sensemakr.html:60:1 (plot.sensemakr.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Found the following HTML validation problems:
pcoriaccel_estimate_pmf.html:66:1 (pcoriaccel_estimate_pmf.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "R."),
                      family = "Rosenbaum",
                      role = c("aut", "cre"),
                      email = "rosenbaum@wharton.upenn.edu"),
               person(given = c("Dylan", "S."),
                      family = "Small",
                      role = "aut"))
as necessary.
Maintainer: ‘Bo Zhang <bozhan@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "bozhan@wharton.upenn.edu")
as necessary.

The Description field contains
  B., Small, D. S. (2018). <arXiv:1812.00215>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dylan Small <dsmall@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dylan",
                    family = "Small",
                    role = c("aut", "cre"),
                    email = "dsmall@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Ibtihel Rebhi <ibtihel.rebhi@enit.utm.tn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ibtihel",
                      family = "Rebhi",
                      role = c("aut", "cre"),
                      email = "ibtihel.rebhi@enit.utm.tn"),
               person(given = "Dhafer",
                      family = "Malouche",
                      role = "ctb"))
as necessary.
Found the following HTML validation problems:
effects.html:123:1 (effects.Rd:73): Warning: missing </ul> before </div>
partdevs.html:160:1 (partdevs.Rd:107): Warning: missing </ul> before </div>
plot.effectsMed.html:89:1 (plot.effectsMed.Rd:36): Warning: missing </ul> before </div>
stderrs.html:131:1 (stderrs.Rd:79): Warning: missing </ul> before </div>
Maintainer: ‘Brian C. Franczak <bfrancza@math.mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cre"),
                      email = "bfrancza@math.mcmaster.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Maintainer: ‘Kjetil B Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kjetil", "B"),
                    family = "Halvorsen",
                    role = c("aut", "cre"),
                    email = "kjetil1001@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘E1.19.Rd’:
    \concept{Data on Book Prices, Pages and Type of Bi [TRUNCATED]
  File ‘E2.9.Rd’:
    \concept{Data on Capital, Labour and Value Added f [TRUNCATED]
  File ‘E4.11.Rd’:
    \concept{ Data on Cost of Repairing Starters, Ring [TRUNCATED]
  File ‘E7.2.Rd’:
    \concept{Prices of Crude Oil, Natural Gas, Bitumin [TRUNCATED]
  File ‘E9.3.Rd’:
    \concept{ Areas, lengths and widths of rectangles  [TRUNCATED]
  File ‘E9.8.Rd’:
    \concept{ Data on monthly rent, annual income and  [TRUNCATED]
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
get_default_embedding.html:54:1 (get_default_embedding.Rd:14): Warning: missing </ul> before </div>
read_embedding.html:56:1 (read_embedding.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
get_sentences2.html:50:1 (get_sentences2.Rd:12): Warning: missing </ul> before </div>
print.extract_emotion_terms.html:51:1 (print.extract_emotion_terms.Rd:12): Warning: missing </ul> before </div>
print.extract_profanity_terms.html:51:1 (print.extract_profanity_terms.Rd:12): Warning: missing </ul> before </div>
print.extract_sentiment_terms.html:51:1 (print.extract_sentiment_terms.Rd:12): Warning: missing </ul> before </div>
print.validate_sentiment.html:51:1 (print.validate_sentiment.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
sentometrics-defunct.html:91:1 (sentometrics-defunct.Rd:77): Warning: missing </ul> before </div>
Found the following HTML validation problems:
capture_function_calls.html:46:1 (capture_function_calls.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Brian Greenhill <bgreenhill@albany.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "D."),
                      family = "Greenhill",
                      role = "aut"),
               person(given = c("Michael", "D."),
                      family = "Ward",
                      role = "aut"),
               person(given = "Audrey",
                      family = "Sacks",
                      role = "aut"),
               person(given = "Brian",
                      family = "Greenhill",
                      role = "cre",
                      email = "bgreenhill@albany.edu"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Inder Tecuapetla-Gómez [cre, aut] (0000-0001-6251-972X), Fanny Galicia-Gómez [ctb], Francisco Rosales-Marticorena [ctb]’
  Authors@R: ‘Inder Tecuapetla-Gómez [cre, aut] (ORDIC: 0000-0001-6251-972X), Fanny Galicia-Gómez [ctb], Francisco Rosales-Marticorena [ctb]’
Maintainer: ‘Lewis A. Jones <LewisA.Jones@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiaoshu Zhu <xiaoshuzhu@westat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoshu",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "xiaoshuzhu@westat.com"),
               person(given = "Sharon",
                      family = "Lohr",
                      role = "aut"))
as necessary.
Maintainer: ‘Dalibor Krleža <dalibor.krleza@fer.hr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dalibor",
                    family = "Krleža",
                    role = c("aut", "cre"),
                    email = "dalibor.krleza@fer.hr")
as necessary.
Specified C++14: please drop specification unless essential
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
setInputDefinitions,HybridSequenceClassifier-method.html:72:1 (setInputDefinitions,HybridSequenceClassifier-method.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Bettina Budeus <bettina.budeus@stud.uni-due.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bettina",
                    family = "Budeus",
                    role = c("aut", "cre"),
                    email = "bettina.budeus@stud.uni-due.de")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘assocpointpair_result.csv’ ‘foundereffectfinder_result.csv’
  ‘getfreqs_result.csv’ ‘getfreqs_result.png’ ‘orPlot.pdf1_1.pdf’
  ‘orPlot.pdf2_1.pdf’ ‘orPlot.pdf3_1.pdf’ ‘orPlot.pdf4_1.pdf’
  ‘orPlot.pdf5_1.pdf’ ‘orPlot.pdf6_1.pdf’ ‘orPlot.pdf7_1.pdf’
  ‘orPlot.pdf8_1.pdf’ ‘q-values_result.csv’ ‘rewritetuple_result.csv’
  ‘tartan_plot.pdf’ ‘vispair_plot.pdf’ ‘vispairfeat_plot.pdf’
  ‘volcano_plot.pdf’
Found the following HTML validation problems:
data_to_stslist.html:75:1 (data_to_stslist.Rd:30): Warning: missing </ul> before </div>
emission_probs.html:58:1 (emission_probs.Rd:22): Warning: missing </ul> before </div>
get_marginals.html:94:1 (get_marginals.Rd:36): Warning: missing </ul> before </div>
gridplot.html:129:1 (gridplot.Rd:70): Warning: missing </ul> before </div>
initial_probs.html:58:1 (initial_probs.Rd:22): Warning: missing </ul> before </div>
nobs.html:63:1 (nobs.Rd:21): Warning: missing </ul> before </div>
predict.html:104:1 (predict.Rd:51): Warning: missing </ul> before </div>
simulate_pars.html:81:1 (simulate_pars.Rd:35): Warning: missing </ul> before </div>
sort_sequences.html:65:1 (sort_sequences.Rd:23): Warning: missing </ul> before </div>
summary.mnhmm.html:51:1 (summary.mnhmm.Rd:12): Warning: missing </ul> before </div>
transition_probs.html:58:1 (transition_probs.Rd:22): Warning: missing </ul> before </div>
update_nhmm.html:64:1 (update_nhmm.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Niklas Pfister <pfister@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Niklas",
                      family = "Pfister",
                      role = c("aut", "cre"),
                      email = "pfister@stat.math.ethz.ch"),
               person(given = "Jonas",
                      family = "Peters",
                      role = "aut"))
as necessary.
Maintainer: ‘Paul C. Boutros <pboutros@mednet.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fouad",
                      family = "Yousif",
                      role = "aut"),
               person(given = "Xihui",
                      family = "Lin",
                      role = "aut"),
               person(given = "Fan",
                      family = "Fan",
                      role = "aut"),
               person(given = "Christopher",
                      family = "Lalansingh",
                      role = "aut"),
               person(given = "John",
                      family = "Macdonald",
                      role = "aut"),
               person(given = c("Paul", "C."),
                      family = "Boutros",
                      role = "cre",
                      email = "pboutros@mednet.ucla.edu"))
as necessary.
Maintainer: ‘Mingli Lei<leimingli2013@sjtu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingli",
                      family = "Lei",
                      role = c("aut", "cre"),
                      email = "leimingli2013@sjtu.edu.cn"),
               person(given = "Jia",
                      family = "Xu",
                      role = "aut"),
               person(given = "Li-Ching",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lily",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jing",
                      family = "Li",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘consensus.R’
Found the following HTML validation problems:
isURL.html:46:1 (isURL.Rd:10): Warning: missing </ul> before </div>
verifyFilename.html:52:1 (verifyFilename.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Hui Zheng <hzheng1@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "A"),
                      family = "Schoenfeld",
                      role = "aut"),
               person(given = "Hui",
                      family = "Zheng",
                      role = c("aut", "cre"),
                      email = "hzheng1@mgh.harvard.edu"))
as necessary.
Found the following HTML validation problems:
SEQexpand.html:46:1 (SEQexpand.Rd:10): Warning: missing </ul> before </div>
clean_fastglm.html:46:1 (clean_fastglm.Rd:10): Warning: missing </ul> before </div>
inline.pred.html:66:1 (inline.pred.Rd:24): Warning: missing </ul> before </div>
internal.plot.html:50:1 (internal.plot.Rd:12): Warning: missing </ul> before </div>
internal.weights.html:54:1 (internal.weights.Rd:14): Warning: missing </ul> before </div>
prepare.data.html:58:1 (prepare.data.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
MakeAgePrior.html:280:1 (MakeAgePrior.Rd:180): Warning: <h3> anchor "MaxAgeParent" already defined
MergeFill.html:65:1 (MergeFill.Rd:20): Warning: missing </ul> before </div>
MkAPdefault.html:54:1 (MkAPdefault.Rd:14): Warning: missing </ul> before </div>
writeColumns.html:62:1 (writeColumns.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dbGetInfo.html:50:1 (dbGetInfo.Rd:13): Warning: missing </ul> before </div>
format.DrillConnection.html:51:1 (format.DrillConnection.Rd:12): Warning: missing </ul> before </div>
print.drill_conn.html:51:1 (print.drill_conn.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Martin Seilmayer <m.seilmayer@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "m.seilmayer@hzdr.de")
as necessary.
Found the following HTML validation problems:
isOpen.html:50:1 (isOpen.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Edward Schuberg <eschu003@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edward",
                    family = "Schuberg",
                    role = c("aut", "cre"),
                    email = "eschu003@ucr.edu")
as necessary.
Found the following HTML validation problems:
madansky.fun.html:58:1 (madansky.fun.Rd:16): Warning: missing </ul> before </div>
mr.fun.html:54:1 (mr.fun.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_seroprev_counts_by_bin.html:77:1 (get_seroprev_counts_by_bin.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Oisín Ryan <o.ryan@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oisín",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "o.ryan@uu.nl")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/ryanoisin/SEset
which should likely be
  https://github.com/ryanoisin/SEset/issues
instead.
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
Maintainer: ‘Rakshitha Godahewa <rakshithagw@gmail.com>’

The Description field contains
  in Godahewa et al. (2022) <arXiv:2211.08661v1>. The model uses the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhi Jin <nalanchongxuan@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhi",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "nalanchongxuan@163.com"),
               person(given = "Jing",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Found the following HTML validation problems:
CheckLayersName.html:50:1 (CheckLayersName.Rd:12): Warning: missing </ul> before </div>
SeuratObject-options.html:99:1 (SeuratObject-options.Rd:47): Warning: missing </ul> before </div>
SparseEmptyMatrix.html:50:1 (SparseEmptyMatrix.Rd:12): Warning: missing </ul> before </div>
Theta.html:46:1 (Theta.Rd:10): Warning: missing </ul> before </div>
dot-GetConsensusFeatures.html:61:1 (dot-GetConsensusFeatures.Rd:18): Warning: missing </ul> before </div>
dot-GetVariableFeatures.html:68:1 (dot-GetVariableFeatures.Rd:23): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Joiner.Rd’ ‘Splitter.Rd’ ‘add_node.Rd’ ‘print.sewage_pipeline.Rd’
    ‘pull_output.Rd’ ‘run.Rd’
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sfaendog.Rd’:
    https://doi.org/10.1016/0304-4076(87)90015-7
    https://doi.org/10.1093/ajae/aaw077
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘h_curve.Rd’ ‘sfc_4x4_meander.Rd’ ‘sfc_generator.Rd’
    ‘spacefilling.Rd’
Found the following HTML validation problems:
check_pkg_suggests.html:46:1 (check_pkg_suggests.Rd:10): Warning: missing </ul> before </div>
class_modify.html:50:1 (class_modify.Rd:12): Warning: missing </ul> before </div>
jc_clc_perm_impl.html:58:1 (jc_clc_perm_impl.Rd:16): Warning: missing </ul> before </div>
local_g_spt.html:67:1 (local_g_spt.Rd:20): Warning: missing </ul> before </div>
local_moran_bv_calc.html:50:1 (local_moran_bv_calc.Rd:12): Warning: missing </ul> before </div>
local_moran_bv_impl.html:58:1 (local_moran_bv_impl.Rd:16): Warning: missing </ul> before </div>
local_moran_bv_perm_impl.html:54:1 (local_moran_bv_perm_impl.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
File ‘sfheaders/libs/sfheaders.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘st_transform_outline.R’
Maintainer: ‘Kevin Titeca <sfinxinteractomics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
s2.html:50:1 (s2.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dbDataType.html:56:1 (dbDataType.Rd:15): Warning: missing </ul> before </div>
dbWriteTable.html:113:1 (dbWriteTable.Rd:58): Warning: missing </ul> before </div>
dot-stop_geos.html:46:1 (dot-stop_geos.Rd:10): Warning: missing </ul> before </div>
is_driver_available.html:51:1 (is_driver_available.Rd:13): Warning: missing </ul> before </div>
is_driver_can.html:56:1 (is_driver_can.Rd:15): Warning: missing </ul> before </div>
is_geometry_column.html:54:1 (is_geometry_column.Rd:14): Warning: missing </ul> before </div>
rawToHex.html:46:1 (rawToHex.Rd:10): Warning: missing </ul> before </div>
st_as_grob.html:50:1 (st_as_grob.Rd:12): Warning: missing </ul> before </div>
stars.html:167:1 (stars.Rd:89): Warning: missing </ul> before </div>
summary.sfc.html:59:1 (summary.sfc.Rd:16): Warning: missing </ul> before </div>
vctrs.html:72:1 (vctrs.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Utz-Uwe Haus <uhaus@cray.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following (possibly) invalid file URIs:
  URI: github
    From: README.md
  URI: Win-Builder
    From: README.md
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SFS.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Mohamed Laib <laib.med@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mohamed",
                      family = "Laib",
                      role = c("aut", "cre"),
                      email = "laib.med@gmail.com"),
               person(given = "Mikhail",
                      family = "Kanevski",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
Print_sftrack_objects.html:59:1 (Print_sftrack_objects.Rd:17): Warning: missing </ul> before </div>
Print_sftraj_objects.html:59:1 (Print_sftraj_objects.Rd:17): Warning: missing </ul> before </div>
active_group_replace.html:59:1 (active_group_replace.Rd:22): Warning: missing </ul> before </div>
calc_sort_index.html:50:1 (calc_sort_index.Rd:12): Warning: missing </ul> before </div>
check_NA_coords.html:46:1 (check_NA_coords.Rd:10): Warning: missing </ul> before </div>
check_NA_group.html:46:1 (check_NA_group.Rd:10): Warning: missing </ul> before </div>
check_group_id.html:46:1 (check_group_id.Rd:10): Warning: missing </ul> before </div>
check_group_names.html:46:1 (check_group_names.Rd:10): Warning: missing </ul> before </div>
check_names_exist.html:50:1 (check_names_exist.Rd:12): Warning: missing </ul> before </div>
check_ordered.html:54:1 (check_ordered.Rd:14): Warning: missing </ul> before </div>
check_t_regular.html:46:1 (check_t_regular.Rd:10): Warning: missing </ul> before </div>
check_time.html:46:1 (check_time.Rd:10): Warning: missing </ul> before </div>
dup_timestamp.html:50:1 (dup_timestamp.Rd:12): Warning: missing </ul> before </div>
group_labels.html:55:1 (group_labels.Rd:19): Warning: missing </ul> before </div>
group_name.html:55:1 (group_name.Rd:20): Warning: missing </ul> before </div>
is_linestring.html:50:1 (is_linestring.Rd:10): Warning: missing </ul> before </div>
merge_traj.html:46:1 (merge_traj.Rd:10): Warning: missing </ul> before </div>
new_sftrack.html:62:1 (new_sftrack.Rd:18): Warning: missing </ul> before </div>
new_sftraj.html:62:1 (new_sftraj.Rd:18): Warning: missing </ul> before </div>
step_recalc.html:51:1 (step_recalc.Rd:12): Warning: missing </ul> before </div>
summary_sftrack.html:46:1 (summary_sftrack.Rd:10): Warning: missing </ul> before </div>
which_duplicated.html:54:1 (which_duplicated.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Monique Graf <monique.p.n.graf@bluewin.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monique",
                    family = "Graf",
                    role = c("aut", "cre"),
                    email = "monique.p.n.graf@bluewin.ch")
as necessary.
Found the following HTML validation problems:
cpp.airwls.glmfit.html:105:1 (cpp.airwls.glmfit.Rd:45): Warning: missing </ul> before </div>
cpp.airwls.glmstep.html:90:1 (cpp.airwls.glmstep.Rd:36): Warning: missing </ul> before </div>
cpp.airwls.update.html:124:1 (cpp.airwls.update.Rd:57): Warning: missing </ul> before </div>
cpp.fit.airwls.html:168:1 (cpp.fit.airwls.Rd:84): Warning: missing </ul> before </div>
cpp.fit.block.sgd.html:198:1 (cpp.fit.block.sgd.Rd:102): Warning: missing </ul> before </div>
cpp.fit.coord.sgd.html:198:1 (cpp.fit.coord.sgd.Rd:102): Warning: missing </ul> before </div>
cpp.fit.newton.html:163:1 (cpp.fit.newton.Rd:81): Warning: missing </ul> before </div>
cpp.fit.random.block.sgd.html:198:1 (cpp.fit.random.block.sgd.Rd:102): Warning: missing </ul> before </div>
make.pos.diag.html:46:1 (make.pos.diag.Rd:10): Warning: missing </ul> before </div>
norm.procrustes.html:50:1 (norm.procrustes.Rd:12): Warning: missing </ul> before </div>
ols.fit.coef.html:54:1 (ols.fit.coef.Rd:14): Warning: missing </ul> before </div>
partition.html:54:1 (partition.Rd:12): Warning: missing </ul> before </div>
procrustes.html:58:1 (procrustes.Rd:16): Warning: missing </ul> before </div>
set.family.html:47:1 (set.family.Rd:10): Warning: missing </ul> before </div>
set.penalty.html:59:1 (set.penalty.Rd:16): Warning: missing </ul> before </div>
vglm.fit.coef.html:85:1 (vglm.fit.coef.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Youngki Shin <shiny11@mcmaster.ca>’

The Description field contains
  <arXiv:2209.14502> "Fast Inference for Quantile Regression with Tens of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  sgd/explicit_sgd.h:25:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  sgd/implicit_sgd.h:150:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  sgd/momentum_sgd.h:27:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  sgd/nesterov_sgd.h:27:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  validity-check/validity_check.h:21:17: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sgd.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
'library' or 'require' call not declared from: ‘microbenchmark’
Found the following HTML validation problems:
print.sgd.html:51:1 (print.sgd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Gregory Vaughan <gvaughan@bentley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Vaughan",
                      role = c("aut", "cre"),
                      email = "gvaughan@bentley.edu"),
               person(given = "Kun",
                      family = "Chen",
                      role = "ctb"),
               person(given = "Jun",
                      family = "Yan",
                      role = "ctb"))
as necessary.
checkRd: (-1) bisee.Rd:127: Lost braces
   127 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) hisee.Rd:101: Lost braces
   101 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) isee.Rd:116: Lost braces
   116 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) see.Rd:98: Lost braces
    98 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "James", "J.", "Majure", "Iowa", "State"),
                      family = "University",
                      role = "aut",
                      email = "majure@iastate.edu"),
               person(given = c("R", "port", "+", "extensions", "by", "Albrecht"),
                      family = "Gebhardt",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Maintainer: ‘Luigi Augugliaro <luigi.augugliaro@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luigi",
                    family = "Augugliaro",
                    role = c("aut", "cre"),
                    email = "luigi.augugliaro@unipa.it")
as necessary.
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "Alberto", "Cardozo"),
                      family = "Delgado",
                      role = c("aut", "cre"),
                      email = "cardozorpackages@gmail.com"),
               person(given = "G.",
                      family = "Paula",
                      role = "aut"),
               person(given = "L.",
                      family = "Vanegas",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
logLik.sglg.html:51:1 (logLik.sglg.Rd:12): Warning: missing </ul> before </div>
residuals.sglg.html:51:1 (residuals.sglg.Rd:12): Warning: missing </ul> before </div>
summary.sglg.html:51:1 (summary.sglg.Rd:12): Warning: missing </ul> before </div>