Found the following HTML validation problems:
Numbat.html:397:1 (Numbat.Rd:230): Warning: missing </ul> before </div>
Numbat.html:165:1 (Numbat.Rd:94): Warning: <h5> anchor "Usage" already defined
Numbat.html:171:1 (Numbat.Rd:98): Warning: <h5> anchor "Arguments" already defined
Numbat.html:194:1 (Numbat.Rd:111): Warning: <h5> anchor "Usage" already defined
Numbat.html:200:1 (Numbat.Rd:115): Warning: <h5> anchor "Arguments" already defined
Numbat.html:227:1 (Numbat.Rd:132): Warning: <h5> anchor "Usage" already defined
Numbat.html:233:1 (Numbat.Rd:136): Warning: <h5> anchor "Arguments" already defined
Numbat.html:256:1 (Numbat.Rd:149): Warning: <h5> anchor "Usage" already defined
Numbat.html:262:1 (Numbat.Rd:153): Warning: <h5> anchor "Arguments" already defined
Numbat.html:285:1 (Numbat.Rd:166): Warning: <h5> anchor "Usage" already defined
Numbat.html:291:1 (Numbat.Rd:170): Warning: <h5> anchor "Arguments" already defined
Numbat.html:314:1 (Numbat.Rd:183): Warning: <h5> anchor "Usage" already defined
Numbat.html:320:1 (Numbat.Rd:187): Warning: <h5> anchor "Arguments" already defined
Numbat.html:343:1 (Numbat.Rd:200): Warning: <h5> anchor "Usage" already defined
Numbat.html:349:1 (Numbat.Rd:204): Warning: <h5> anchor "Arguments" already defined
Numbat.html:374:1 (Numbat.Rd:219): Warning: <h5> anchor "Usage" already defined
Numbat.html:380:1 (Numbat.Rd:223): Warning: <h5> anchor "Arguments" already defined
approx_theta_post.html:78:1 (approx_theta_post.Rd:30): Warning: missing </ul> before </div>
calc_allele_lik.html:62:1 (calc_allele_lik.Rd:18): Warning: missing </ul> before </div>
check_contam.html:46:1 (check_contam.Rd:10): Warning: missing </ul> before </div>
check_exp_noise.html:46:1 (check_exp_noise.Rd:10): Warning: missing </ul> before </div>
exp_hclust.html:78:1 (exp_hclust.Rd:30): Warning: missing </ul> before </div>
get_internal_nodes.html:54:1 (get_internal_nodes.Rd:14): Warning: missing </ul> before </div>
get_lambdas_bar.html:54:1 (get_lambdas_bar.Rd:14): Warning: missing </ul> before </div>
log_message.html:50:1 (log_message.Rd:12): Warning: missing </ul> before </div>
relevel_chrom.html:46:1 (relevel_chrom.Rd:10): Warning: missing </ul> before </div>
run_group_hmms.html:98:1 (run_group_hmms.Rd:44): Warning: missing </ul> before </div>
upgma.html:56:1 (upgma.Rd:16): Warning: missing </ul> before </div>
viterbi_loh.html:51:1 (viterbi_loh.Rd:15): Warning: missing </ul> before </div>