Found the following HTML validation problems:
CDF.html:106:1 (CDF.Rd:59): Warning: <h5> anchor "Usage" already defined
CDF.html:112:1 (CDF.Rd:63): Warning: <h5> anchor "Arguments" already defined
CDF.html:125:1 (CDF.Rd:70): Warning: <h5> anchor "Returns" already defined
OneSampleTest.html:86:1 (OneSampleTest.Rd:42): Warning: missing </ul> before </div>
PermuTest.html:189:1 (PermuTest.Rd:105): Warning: missing </ul> before </div>
PermuTest.html:134:1 (PermuTest.Rd:76): Warning: <h5> anchor "Usage" already defined
PermuTest.html:140:1 (PermuTest.Rd:80): Warning: <h5> anchor "Returns" already defined
PermuTest.html:157:1 (PermuTest.Rd:89): Warning: <h5> anchor "Usage" already defined
PermuTest.html:163:1 (PermuTest.Rd:93): Warning: <h5> anchor "Arguments" already defined
PermuTest.html:178:1 (PermuTest.Rd:102): Warning: <h5> anchor "Returns" already defined
Maintainer: ‘Liam J. Revell <liam.revell@umb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Liam", "J."),
                    family = "Revell",
                    role = c("aut", "cre"),
                    email = "liam.revell@umb.edu")
as necessary.
Found the following HTML validation problems:
knit_print.html:57:1 (knit_print.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
db1rl.html:48:1 (db1rl.Rd:12): Warning: missing </ul> before </div>
db2.html:48:1 (db2.Rd:12): Warning: missing </ul> before </div>
db3.html:48:1 (db3.Rd:12): Warning: missing </ul> before </div>
db_flowers.html:47:1 (db_flowers.Rd:11): Warning: missing </ul> before </div>
db_per_and.html:48:1 (db_per_and.Rd:12): Warning: missing </ul> before </div>
db_per_or.html:48:1 (db_per_or.Rd:12): Warning: missing </ul> before </div>
db_per_xor.html:48:1 (db_per_xor.Rd:12): Warning: missing </ul> before </div>
db_tree_struct.html:47:1 (db_tree_struct.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.conductanceMatrix.html:51:1 (plot.conductanceMatrix.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
default_toolchain.html:46:1 (default_toolchain.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
propofnormal.html:50:1 (propofnormal.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
common_parameters.html:98:1 (common_parameters.Rd:43): Warning: missing </ul> before </div>
Maintainer: ‘Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexia",
                    family = "Jolicoeur-Martineau",
                    role = c("aut", "cre"),
                    email = "alexia.jolicoeur-martineau@mail.mcgill.ca")
as necessary.

The Description field contains
  <arXiv:1703.08111>. This approach has greatly enhanced predictive power
  are available <arXiv:1712.04058>. The software can now produce
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
rGE.html:50:1 (rGE.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘grab_crosswalk.R’ ‘lehdr.R’
Found the following HTML validation problems:
aggregate_lodes_df.html:54:1 (aggregate_lodes_df.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘S. Thomas Kelly <tomkellygenetics@gmail.com>’

The Description field contains
  to Leiden: guaranteeing well-connected communities. <arXiv:1810.08473>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Leonard <davidsleonard@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
get_panel_range.html:55:1 (get_panel_range.Rd:19): Warning: missing </ul> before </div>
lemon_plot.html:53:1 (lemon_plot.Rd:16): Warning: missing </ul> before </div>
remove_labels_from_axis.html:50:1 (remove_labels_from_axis.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Chris Hammill <cfhammill@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: www.schoolofhaskell.com/school/to-infinity-and-beyond/pick-of-the-week/a-little-lens-starter-tutorial
    From: README.md
Found the following HTML validation problems:
drop_while_il.html:48:1 (drop_while_il.Rd:10): Warning: missing </ul> before </div>
over_map.html:55:1 (over_map.Rd:14): Warning: missing </ul> before </div>
send.html:54:1 (send.Rd:14): Warning: missing </ul> before </div>
send_over.html:58:1 (send_over.Rd:16): Warning: missing </ul> before </div>
set.html:56:1 (set.Rd:14): Warning: missing </ul> before </div>
upper_tri_l.html:51:1 (upper_tri_l.Rd:14): Warning: missing </ul> before </div>
view.html:51:1 (view.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
backward_linkage.html:46:1 (backward_linkage.Rd:10): Warning: missing </ul> before </div>
employment_multiplier.html:50:1 (employment_multiplier.Rd:12): Warning: missing </ul> before </div>
employment_number.html:54:1 (employment_number.Rd:14): Warning: missing </ul> before </div>
forward_linkage.html:46:1 (forward_linkage.Rd:10): Warning: missing </ul> before </div>
income_multiplier.html:50:1 (income_multiplier.Rd:12): Warning: missing </ul> before </div>
multiplier_product_matrix.html:46:1 (multiplier_product_matrix.Rd:10): Warning: missing </ul> before </div>
power_dispersion.html:46:1 (power_dispersion.Rd:10): Warning: missing </ul> before </div>
power_dispersion_cv.html:46:1 (power_dispersion_cv.Rd:10): Warning: missing </ul> before </div>
sensitivity_dispersion.html:46:1 (sensitivity_dispersion.Rd:10): Warning: missing </ul> before </div>
sensitivity_dispersion_cv.html:46:1 (sensitivity_dispersion_cv.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Lucas Processi <lucasprocessi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lucas",
                      family = "Processi",
                      role = c("aut", "cre"),
                      email = "lucasprocessi@gmail.com"),
               person(given = "Luiz",
                      family = "Aizemberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Burhan Ozer Cavdar <bcavdar17@ku.edu.tr>’

The Description field contains
  <arXiv:2112.06251>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
dot-checkPenalties.html:48:1 (dot-checkPenalties.Rd:12): Warning: missing </ul> before </div>
dot-setAMatrix.html:73:1 (dot-setAMatrix.Rd:27): Warning: missing </ul> before </div>
dot-setMVector.html:78:1 (dot-setMVector.Rd:30): Warning: missing </ul> before </div>
dot-setSMatrix.html:73:1 (dot-setSMatrix.Rd:27): Warning: missing </ul> before </div>
lessSEM.html:616:70 (lessSEM.Rd:434): Warning: missing </p> before <a>
lessSEM.html:616:11 (lessSEM.Rd:434): Warning: missing </a> before <a>
lessSEM.html:616:245 (lessSEM.Rd:434): Warning: inserting implicit <p>
lessSEM.html:616:249 (lessSEM.Rd:434): Warning: discarding unexpected </a>
lessSEM.html:616:70 (lessSEM.Rd:434): Warning: trimming empty <p>
lessSEM.html:616:245 (lessSEM.Rd:434): Warning: trimming empty <p>
Maintainer: ‘Petter Mostad <mostad@chalmers.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petter",
                    family = "Mostad",
                    role = c("aut", "cre"),
                    email = "mostad@chalmers.se")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lets.presab.Rd: terra, sf
  lets.presab.grid.Rd: terra, sf
  lets.shFilter.Rd: terra, sf
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘letter_value.R’ ‘print_lv.R’
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) hash_sentiment_slangsd.Rd:28-37: Lost braces
    28 | article{DBLP:journals/corr/Wu-etal16,
       |        ^
checkRd: (-1) hash_sentiment_slangsd.Rd:29: Lost braces; missing escapes or markup?
    29 |   author    = {Liang Wu and Fred Morstatter and Huan Liu},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:30-31: Lost braces
    30 |   title     = {SlangSD: Building and Using a Sentiment Dictionary of Slang 
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:32: Lost braces; missing escapes or markup?
    32 |   journal   = {CoRR},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:33: Lost braces; missing escapes or markup?
    33 |   volume    = {abs/1608.05129},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:34: Lost braces; missing escapes or markup?
    34 |   year      = {2016},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:35: Lost braces; missing escapes or markup?
    35 |   url       = {http://arxiv.org/abs/1608.05129},
       |               ^
checkRd: (-1) hash_sentiment_slangsd.Rd:36: Lost braces; missing escapes or markup?
    36 |   timestamp = {Wed, 17 Aug 2016 23:32:57 GMT}
       |               ^
checkRd: (-1) sw_python.Rd:32: Lost braces; missing escapes or markup?
    32 | * Neither the name of the {organization} nor the names of its
       |                           ^
Found the following HTML validation problems:
LNToutput_methods.html:81:1 (LNToutput_methods.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Adam Spannbauer <spannbaueradam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Spannbauer",
                      role = c("aut", "cre"),
                      email = "spannbaueradam@gmail.com"),
               person(given = "Bryan",
                      family = "White",
                      role = "ctb"))
as necessary.
Maintainer: ‘Florian Erhard <florian.erhard@uni-wuerzburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Florian",
                    family = "Erhard",
                    role = c("aut", "cre"),
                    email = "florian.erhard@uni-wuerzburg.de")
as necessary.
Maintainer: ‘Yuan Tang <terrytangyuan@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.lfda.html:51:1 (print.lfda.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ali Karimnezhad <ali_karimnezhad@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ali",
                      family = "Karimnezhad",
                      role = c("aut", "cre"),
                      email = "ali_karimnezhad@yahoo.com"),
               person(given = "Johnary",
                      family = "Kim",
                      role = "aut"),
               person(given = "Anna",
                      family = "Akpawu",
                      role = "aut"),
               person(given = "Justin",
                      family = "Chitpin",
                      role = "aut"),
               person(given = c("David", "R"),
                      family = "Bickel",
                      role = "aut"))
as necessary.
Maintainer: ‘M. Padilla <padilla.mpf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ye",
                      family = "Yang",
                      role = "aut"),
               person(given = "Marta",
                      family = "Padilla",
                      role = "aut"),
               person(given = "Alaa",
                      family = "Ali",
                      role = "aut"),
               person(given = "Kyle",
                      family = "Leckett",
                      role = "aut"),
               person(given = "Zhenyu",
                      family = "Yang",
                      role = "aut"),
               person(given = "Zuojing",
                      family = "Li",
                      role = "aut"),
               person(given = c("Corey", "M."),
                      family = "Yanofsky",
                      role = "aut"),
               person(given = c("David", "R."),
                      family = "Bickel",
                      role = "aut"),
               person(given = "M.",
                      family = "Padilla",
                      role = "cre",
                      email = "padilla.mpf@gmail.com"))
as necessary.
Maintainer: ‘Ali Karimnezhad <ali.karimnezhad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ali",
                    family = "Karimnezhad",
                    role = c("aut", "cre"),
                    email = "ali.karimnezhad@gmail.com")
as necessary.
Found the following HTML validation problems:
dot-.oldfelm.html:171:1 (dot-.oldfelm.Rd:113): Warning: missing </ul> before </div>
Found the following HTML validation problems:
hasNext.html:46:1 (hasNext.Rd:10): Warning: missing </ul> before </div>
hasNext.iter.html:48:1 (hasNext.iter.Rd:10): Warning: missing </ul> before </div>
loop.mcmc.html:50:1 (loop.mcmc.Rd:12): Warning: missing </ul> before </div>
mcmcLoop.html:62:1 (mcmcLoop.Rd:18): Warning: missing </ul> before </div>
nextStep.html:46:1 (nextStep.Rd:10): Warning: missing </ul> before </div>
print.mcmc.html:52:1 (print.mcmc.Rd:12): Warning: missing </ul> before </div>
resetLoop.html:46:1 (resetLoop.Rd:10): Warning: missing </ul> before </div>
setTxtProgressBar2.html:58:1 (setTxtProgressBar2.Rd:16): Warning: missing </ul> before </div>
summary.mcmc.html:53:1 (summary.mcmc.Rd:12): Warning: missing </ul> before </div>
txtProgressBar2.html:84:1 (txtProgressBar2.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihuai",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "zihuai@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"),
               person(given = "Bhramar",
                      family = "Mukherjee",
                      role = "aut"),
               person(given = "Min",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) prior_to_num.Rd:13: Lost braces; missing escapes or markup?
    13 |   {'uniform', 'normal', 'student-t', 'gamma', 'inv-gamma', 'log-normal'}
       |   ^
Running ‘testthat.R’ [58s/69s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Short tests
  > #  - focus on testing that everything runs
  > #  - should take less than minute
  > library(testthat)
  > library(lgpr)
  Attached lgpr 1.2.4, using rstan 2.32.7. Type ?lgpr to get started.
  > 
  > test_check("lgpr")
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 446 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_misc-invgamma.R:34:3'): plotting the inverse gamma distribution works ──
  `c1` not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test_misc-invgamma.R:35:3'): plotting the inverse gamma distribution works ──
  `c2` not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 446 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
accept_reject.html:93:1 (accept_reject.Rd:36): Warning: missing </ul> before </div>
check_bw_bivariate.html:47:1 (check_bw_bivariate.Rd:10): Warning: missing </ul> before </div>
check_bw_method.html:47:1 (check_bw_method.Rd:10): Warning: missing </ul> before </div>
check_bw_trivariate.html:47:1 (check_bw_trivariate.Rd:10): Warning: missing </ul> before </div>
check_data.html:58:1 (check_data.Rd:14): Warning: missing </ul> before </div>
check_dmvnorm_arguments.html:67:1 (check_dmvnorm_arguments.Rd:20): Warning: missing </ul> before </div>
check_est_method.html:47:1 (check_est_method.Rd:10): Warning: missing </ul> before </div>
check_lg.html:46:1 (check_lg.Rd:10): Warning: missing </ul> before </div>
ci_test.html:97:1 (ci_test.Rd:40): Warning: missing </ul> before </div>
ci_test_statistic.html:60:1 (ci_test_statistic.Rd:19): Warning: missing </ul> before </div>
dmvnorm_wrapper_single.html:70:1 (dmvnorm_wrapper_single.Rd:22): Warning: missing </ul> before </div>
gradient.html:52:1 (gradient.Rd:13): Warning: missing </ul> before </div>
ind_teststat.html:58:1 (ind_teststat.Rd:16): Warning: missing </ul> before </div>
interpolate_conditional_density.html:71:1 (interpolate_conditional_density.Rd:25): Warning: missing </ul> before </div>
make_C.html:56:1 (make_C.Rd:15): Warning: missing </ul> before </div>
replicate_under_ci.html:81:1 (replicate_under_ci.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@umich.edu")
as necessary.
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Gentleman",
                      role = "aut"),
               person(given = "Arthur",
                      family = "Allignol",
                      role = "cre",
                      email = "arthur.allignol@gmail.com"))
as necessary.
Maintainer: ‘Jiechao Xiong <xiongjiechao@pku.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Feng",
                      family = "Ruan",
                      role = "aut"),
               person(given = "Jiechao",
                      family = "Xiong",
                      role = c("aut", "cre"),
                      email = "xiongjiechao@pku.edu.cn"),
               person(given = "Yuan",
                      family = "Yao",
                      role = "aut"))
as necessary.
checkRd: (-1) isingdata.Rd:14: Lost braces; missing escapes or markup?
    14 |     \item{X}{a 5000-by-100 matrix, each entry is in {-1,1}.}
       |                                                     ^
checkRd: (-1) predict.lb.Rd:16: Escaped LaTeX specials: \$
Found the following HTML validation problems:
package_dependencies.html:57:1 (package_dependencies.Rd:17): Warning: missing </ul> before </div>
session_dependencies.html:46:1 (session_dependencies.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.html:51:1 (as.Rd:13): Warning: missing </ul> before </div>
catalog_apply.html:147:1 (catalog_apply.Rd:110): Warning: <h3> anchor ".options" already defined
deprecated.html:76:1 (deprecated.Rd:45): Warning: missing </ul> before </div>
tools.html:102:1 (tools.Rd:66): Warning: missing </ul> before </div>
Maintainer: ‘Glenna Nightingale <glenna.evans@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Glenna",
                    family = "Nightingale",
                    role = c("aut", "cre"),
                    email = "glenna.evans@gmail.com")
as necessary.
Found the following HTML validation problems:
lint_lifecycle.html:98:1 (lint_lifecycle.Rd:42): Warning: missing </ul> before </div>
Maintainer: ‘Ruben H. Roa-Ureta <ruben.roa.ureta@mail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ruben", "H."),
                    family = "Roa-Ureta",
                    role = c("aut", "cre"),
                    email = "ruben.roa.ureta@mail.com")
as necessary.
Maintainer: ‘Martin Barner <m@martinbarner.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Barner",
                    role = c("aut", "cre"),
                    email = "m@martinbarner.de")
as necessary.
checkRd: (-1) lx_list_lights.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lx_list_lights.Rd:27: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
lgb_shared_dataset_params.html:57:1 (lgb_shared_dataset_params.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
lr_compute_processed.html:48:1 (lr_compute_processed.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
board_classic.html:47:1 (board_classic.Rd:10): Warning: missing </ul> before </div>
board_entries-set.html:50:1 (board_entries-set.Rd:12): Warning: missing </ul> before </div>
board_size.html:46:1 (board_size.Rd:10): Warning: missing </ul> before </div>
board_toggle_matrix.html:49:1 (board_toggle_matrix.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ruggero Bellio <ruggero.bellio@uniud.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruggero",
                      family = "Bellio",
                      role = c("aut", "cre"),
                      email = "ruggero.bellio@uniud.it"),
               person(given = "Donald",
                      family = "Pierce",
                      role = "aut"))
as necessary.
checkRd: (-1) likelihood_calculation.Rd:24: Lost braces
    24 | For eqn{i = 1\dots N} independent observations in a vector \var{X}, with individual observations \eqn{x_i}{xi}, and a set of parameter values \eqn{\theta}:
       |        ^
checkRd: (-1) simulated_annealing_algorithm.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulated_annealing_algorithm.Rd:27: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Peter Cahusac <peteqsac@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘L_1way_ANOVA.Rd’:
    \keyword{ANOVA;}
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_1way_RM_ANOVA.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_1way_cat.Rd’:
    \keyword{Likelihood-based;}
    \keyword{binomial;}
  File ‘L_2S_ttest.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
    \keyword{test;}
  File ‘L_2way_Factorial_ANOVA.Rd’:
    \keyword{ANOVA;}
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_2way_cat.Rd’:
    \keyword{Likelihood-based;}
  File ‘L_OR.Rd’:
    \keyword{Likelihood;}
    \keyword{interval;}
    \keyword{ratio;}
    \keyword{support;}
  File ‘L_RR.Rd’:
    \keyword{Likelihood;}
    \keyword{interval;}
    \keyword{risk;}
    \keyword{support;}
  File ‘L_corr.Rd’:
    \keyword{Likelihood;}
    \keyword{correlation;}
    \keyword{support;}
  File ‘L_efficacy.Rd’:
    \keyword{efficacy;}
    \keyword{interval;}
    \keyword{support;}
  File ‘L_logistic_regress.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
  File ‘L_regress.Rd’:
    \keyword{Likelihood;}
    \keyword{linear;}
    \keyword{quadratic;}
    \keyword{regression;}
    \keyword{support;}
  File ‘L_t_test_sample_size.Rd’:
    \keyword{Likelihood;}
    \keyword{evidence;}
    \keyword{size;}
    \keyword{test;}
  File ‘L_ttest.Rd’:
    \keyword{Likelihood;}
    \keyword{support;}
    \keyword{test;}
Found the following HTML validation problems:
makeItemsScale.html:92:1 (makeItemsScale.Rd:54): Warning: <h4> anchor "alpha" already defined
makeItemsScale.html:106:1 (makeItemsScale.Rd:66): Warning: <h4> anchor "variance" already defined
Found the following HTML validation problems:
label_wrap_mod.html:52:1 (label_wrap_mod.Rd:14): Warning: missing </ul> before </div>
likert.histogram.plot.html:124:1 (likert.histogram.plot.Rd:58): Warning: missing </ul> before </div>
likert.matrix.plot.html:56:1 (likert.matrix.plot.Rd:16): Warning: missing </ul> before </div>
likert.options.html:155:1 (likert.options.Rd:79): Warning: missing </ul> before </div>
print.likert.html:51:1 (print.likert.Rd:12): Warning: missing </ul> before </div>
print.likert.bar.plot.html:57:1 (print.likert.bar.plot.Rd:15): Warning: missing </ul> before </div>
print.likert.gap.html:51:1 (print.likert.gap.Rd:12): Warning: missing </ul> before </div>
print.likert.heat.plot.html:51:1 (print.likert.heat.plot.Rd:12): Warning: missing </ul> before </div>
print.xlikert.html:59:1 (print.xlikert.Rd:16): Warning: missing </ul> before </div>
summary.likert.html:70:1 (summary.likert.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Lana Garmire <lana.garmire.group@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Travis Barton <travisdatabarton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Travis",
                    family = "Barton",
                    role = c("aut", "cre"),
                    email = "travisdatabarton@gmail.com",
                    comment = "2018")
as necessary.
Maintainer: ‘Emil Hvitfeldt <emilhhvitfeldt@gmail.com>’

The Description field contains
  (2016) <arXiv:1602.04938>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
'library' or 'require' calls not declared from:
  ‘data.table’ ‘magrittr’ ‘purrr’
Found the following HTML validation problems:
print.palette.html:51:1 (print.palette.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ethan Z. Welty <ethan.welty+linbin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Derick L. Rivers <riversdl@alumni.vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Derick", "L."),
                      family = "Rivers",
                      role = c("aut", "cre"),
                      email = "riversdl@alumni.vcu.edu"),
               person(given = c("Edward", "L."),
                      family = "Boone",
                      role = "aut"))
as necessary.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Maintainer: ‘Yuancheng Si <siyuanchengman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Saralees", "Nadarajah", "&", "Yuancheng"),
                      family = "Si",
                      role = "aut"),
               person(given = "Peihao",
                      family = "Wang",
                      role = "aut"),
               person(given = "Yuancheng",
                      family = "Si",
                      role = "cre",
                      email = "siyuanchengman@gmail.com"))
as necessary.
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Moriña",
                    role = c("aut", "cre"),
                    email = "david.morina@uab.cat",
                    comment = "ISGlobal, Centre for Research in Environmental Epidemiology")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lineup-shiny.Rd’ ‘taggle-shiny.Rd’
Maintainer: ‘Vishesh Shrivastav <vishesh2k6@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vishesh",
                    family = "Shrivastav",
                    role = c("aut", "cre"),
                    email = "vishesh2k6@gmail.com")
as necessary.
Maintainer: ‘Micah Iserman <micah.iserman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Micah",
                    family = "Iserman",
                    role = c("aut", "cre"),
                    email = "micah.iserman@gmail.com")
as necessary.
Found the following HTML validation problems:
atlas.database.html:73:1 (atlas.database.Rd:27): Warning: missing </ul> before </div>
polygon.points_fd.html:54:1 (polygon.points_fd.Rd:14): Warning: missing </ul> before </div>
polygon.points_kde.html:58:1 (polygon.points_kde.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Yongfu Liao <liao961120@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: /../../issues/3
    From: README.md
Found the following HTML validation problems:
cond_cmpl.html:49:1 (cond_cmpl.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Lisa Ouellette <louellet@uncc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = c("aut", "cre"),
                      email = "charles.bouveyron@gmail.com"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"),
               person(given = "Stéphane",
                      family = "Petiot",
                      role = "aut"),
               person(given = "Carlos",
                      family = "Ocanto",
                      role = "aut"))
as necessary.
Maintainer: ‘Ksenia N. Kyzyurova <ksenia.kyzyurova@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ksenia", "N."),
                      family = "Kyzyurova",
                      role = c("aut", "cre"),
                      email = "ksenia.kyzyurova@gmail.com"),
               person(family = "kseniak.ucoz.net",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Grueneberg <cran@agrueneberg.info>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michal Bojanowski <michal2992@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: recon.icm.edu.pl
    From: man/linkprediction.Rd
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘auto.R’
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Aaron",
                      family = "Wolen",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
pkprofile-methods.html:61:1 (pkprofile-methods.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
checkRd: (-1) solveLP.Rd:119: Escaped LaTeX specials: \&
Maintainer: ‘Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yannick",
                      family = "Baraud",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Giraud",
                      role = "aut"),
               person(given = "Sylvie",
                      family = "Huet",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Auder",
                      role = "cre",
                      email = "benjamin.auder@universite-paris-saclay.fr"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VARselect.Rd: lm.ridge
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
ranges.html:67:1 (ranges.Rd:22): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Jim Hester [aut], Florent Angly [aut] (fangly), Russ Hyde [aut], Michael Chirico [aut, cre], Kun Ren [aut], Alexander Rosenstock [aut] (AshesITR), Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Jim Hester [aut], Florent Angly [aut] (fangly), Russ Hyde [aut], Michael Chirico [aut, cre], Kun Ren [aut], Alexander Rosenstock [aut] (AshesITR), Indrajeet Patil [aut] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Found the following HTML validation problems:
checkstyle_output.html:50:1 (checkstyle_output.Rd:12): Warning: missing </ul> before </div>
expect_lint_free.html:48:1 (expect_lint_free.Rd:10): Warning: missing </ul> before </div>
sarif_output.html:50:1 (sarif_output.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M", "Isabel"),
                    family = "Alcoriza-Balaguer",
                    role = c("aut", "cre"),
                    email = "maribel_alcoriza@iislafe.es")
as necessary.
Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cancerlipidome.Rd’:
    http://dx.doi.org/10.21228/M8RX01
    https://doi.org/10.3390/metabo8030041
  File ‘humanlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://doi.org/10.1194/jlr.M009449
  File ‘liverlipidome.Rd’:
    http://dx.doi.org/10.21228/M8MW26
    https://dx.doi.org/10.1194/jlr.P056002
Found the following HTML validation problems:
heatmap_lipidome.html:172:1 (heatmap_lipidome.Rd:102): Warning: missing </ul> before </div>
install_Bioconductor_dependencies.html:48:1 (install_Bioconductor_dependencies.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Mauro Sereno <mauro.sereno@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauro",
                    family = "Sereno",
                    role = c("aut", "cre"),
                    email = "mauro.sereno@unibo.it")
as necessary.
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Found the following HTML validation problems:
drop_dimnames.html:61:1 (drop_dimnames.Rd:22): Warning: missing </ul> before </div>
ndim.html:46:1 (ndim.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Patrick Roocks <mail@p-roocks.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "Roocks",
                    role = c("aut", "cre"),
                    email = "mail@p-roocks.de")
as necessary.
checkRd: (-1) ld_build_html_site.Rd:41: Lost braces
    41 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}}
       |                                                        ^
checkRd: (-1) ld_create_doc.Rd:29: Lost braces
    29 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}}
       |                                                        ^
Running examples in ‘listdown-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as_ld_yml
> ### Title: Turn a Computational Component List into YAML with Class
> ###   Information
> ### Aliases: as_ld_yml
> 
> ### ** Examples
> 
> if (require("ggplot2")) {
+ 
+   cc_list <- list(
+     Linear = ggplot(anscombe, aes(x = x1, y = y1)) + geom_point(),
+    `Non Linear` = ggplot(anscombe, aes(x = x2, y = y2)) + geom_point(),
+    `Outlier Vertical`= ggplot(anscombe, aes(x = x3, y = y3)) + geom_point(),
+    `Outlier Horizontal` =  ggplot(anscombe, aes(x = x4, y = y4)) +
+      geom_point())
+ 
+   as_ld_yml(cc_list)
+ }
Loading required package: ggplot2
Error in parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)),  : 
  <text>:2:1: unexpected symbol
1: x [[1]]  <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
   ^
Calls: as_ld_yml -> depth_first_copy -> eval -> parse
Execution halted
Running ‘testthat.r’ [23s/27s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
  > library(testthat)
  > library(listdown)
  > 
  > test_check("listdown")
  [ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-create-doc.r:27:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-as-yml.r:20:3'): Writing a yml file works. ─────────────────────
  Error in `parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)), 
      ", collapse = \":\"))"))`: <text>:2:1: unexpected symbol
  1: x [[1]]  <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
  2: x
     ^
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(as_ld_yml(cc_list), read_reference("as-yml.rds")) at test-as-yml.r:20:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─listdown::as_ld_yml(cc_list)
   5.   └─listdown (local) depth_first_copy()
   6.     ├─base::eval(...)
   7.     └─base::parse(...)
  ── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ────────────────────────
  ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds").
  4 string mismatches
  
  [ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
cash-set-.listenv.html:55:1 (cash-set-.listenv.Rd:16): Warning: missing </ul> before </div>
length.listenv.html:47:1 (length.listenv.Rd:11): Warning: missing </ul> before </div>
names.listenv.html:47:1 (names.listenv.Rd:11): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘list_bind.R’
Found the following HTML validation problems:
jsonedit-shiny.html:68:1 (jsonedit-shiny.Rd:25): Warning: missing </ul> before </div>
reactjson-shiny.html:68:1 (reactjson-shiny.Rd:25): Warning: missing </ul> before </div>
recurse.html:55:1 (recurse.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Russell S. Pierce <russell.s.pierce@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Russell", "S."),
                    family = "Pierce",
                    role = c("aut", "cre"),
                    email = "russell.s.pierce@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/drknexus/listWithDefaults
which should likely be
  https://github.com/drknexus/listWithDefaults/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Tim Taylor [ctb] (<https://orcid.org/0000-0002-8587-7113>)’
  Authors@R: ‘Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Tim Taylor [ctb] (ORCID: <https://orcid.org/0000-0002-8587-7113>)’
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Found the following HTML validation problems:
db_ack.html:63:1 (db_ack.Rd:18): Warning: missing </ul> before </div>
db_consume.html:48:1 (db_consume.Rd:10): Warning: missing </ul> before </div>
db_create_queue.html:91:1 (db_create_queue.Rd:20): Warning: missing </ul> before </div>
ensure_db.html:46:1 (ensure_db.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
lit_h.html:58:1 (lit_h.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Will Cornwell <wcornwell@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: \doi%7B10.1111/2041-210X.12138%7D
    From: README.md
Found the following HTML validation problems:
create_litter_project.html:48:1 (create_litter_project.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘dest.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    https://doi.org/10.1016/j.jspi.2010.05.030
    http://doi.org/10.1080/03610920601126522
  File ‘hatl.Rd’:
    http://doi.org/10.1080/03610929308831027
  File ‘infoliu.Rd’:
    https://doi.org/10.1109/TAC.1974.1100705
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘lstats.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    http://doi.org/10.2307/1267380
  File ‘plot.biasliu.Rd’:
    https://doi.org/10.1002/cem.2555
  File ‘plot.infoliu.Rd’:
    https://doi.org/10.1109/TAC.1974.1100705
  File ‘plot.liu.Rd’:
    http://doi.org/10.1080/03610929308831027
  File ‘press.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
    http://doi.org/10.1080/03610920601126522
  File ‘residuals.liu.Rd’:
    http://doi.org/10.1080/03610929508831585
    http://doi.org/10.1080/03610929308831027
  File ‘summary.liu.Rd’:
    http://doi.org/10.1080/03610918.2012.750354
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:77:1 (inst/NEWS.Rd:24): Warning: missing </ul> before </div>
NEWS.html:43:1 (inst/NEWS.Rd:12): Warning: <h4> anchor "Improvements" already defined
checkRd: (-1) lstats.liu.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) vcov.liu.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear Liu regression model for scalar or vector biasing parameter \code{d}{d} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{d}{d}.}
       |                                                                                                                             ^
Found the following HTML validation problems:
print.live_explainer.html:51:1 (print.live_explainer.Rd:12): Warning: missing </ul> before </div>
print.live_explorer.html:51:1 (print.live_explorer.Rd:12): Warning: missing </ul> before </div>
print.local_permutation_importance.html:51:1 (print.local_permutation_importance.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ryan Gill <ryan.gill@louisville.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michal",
                      family = "Czajkowski",
                      role = "aut"),
               person(given = "Ryan",
                      family = "Gill",
                      role = c("aut", "cre"),
                      email = "ryan.gill@louisville.edu"),
               person(given = "Greg",
                      family = "Rempala",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ViewExcel.html:50:1 (ViewExcel.Rd:12): Warning: missing </ul> before </div>
smallSet.html:50:1 (smallSet.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Lars Kotthoff <larsko@uwyo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lars",
                      family = "Kotthoff",
                      role = c("aut", "cre"),
                      email = "larsko@uwyo.edu"),
               person(given = "Bernd",
                      family = "Bischl",
                      role = "aut"),
               person(given = "Barry",
                      family = "Hurley",
                      role = "ctb"),
               person(given = "Talal",
                      family = "Rahwan",
                      role = "ctb"),
               person(given = "Damir",
                      family = "Pulatov",
                      role = "ctb"))
as necessary.
checkRd: (-1) MHDI.Rd:23: Escaped LaTeX specials: \&
Found the following HTML validation problems:
call_llm_par_structured.html:58:1 (call_llm_par_structured.Rd:16): Warning: missing </ul> before </div>
disable_structured_output.html:47:1 (disable_structured_output.Rd:10): Warning: missing </ul> before </div>
llm_fn_structured.html:91:1 (llm_fn_structured.Rd:38): Warning: missing </ul> before </div>
llm_validate_structured_col.html:59:1 (llm_validate_structured_col.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Diego F Coelho <diegofcoelho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Diego", "F"),
                      family = "Coelho",
                      role = c("aut", "cre"),
                      email = "diegofcoelho@gmail.com"),
               person(given = c("Pedro", "Vitor", "Oliveira"),
                      family = "Menezes",
                      role = "dtc",
                      email = "pedrod841@hotmail.com"),
               person(given = c("Carla", "Corina", "dos", "Santos"),
                      family = "Porto",
                      role = "dtc",
                      email = "carlacorina@hotmail.com.br"),
               person(given = c("Jon", "George"),
                      family = "Huddleston",
                      role = "rev",
                      email = "Jonathan.Huddleston@brunel.ac.uk"),
               person(given = c("Elias", "Basile"),
                      family = "Tambourgi",
                      role = "rev",
                      email = "eliastam@feq.unicamp.br"))
as necessary.
Found the following HTML validation problems:
AQSysList.html:48:1 (AQSysList.Rd:11): Warning: missing </ul> before </div>
ExportData.html:48:1 (ExportData.Rd:11): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xtable.lm.beta.Rd: xtable
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Maintainer: ‘"Antoine Tremblay, Statistics Canada" <trea26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antoine",
                      family = "Tremblay",
                      role = "aut"),
               person(given = "Statistics",
                      family = "Canada",
                      role = "aut"),
               person(given = "Johannes",
                      family = "Ransijn",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Copenhagen",
                      role = "aut"),
               person(given = "\"Antoine",
                      family = "Tremblay",
                      role = "cre"),
               person(given = "Statistics",
                      family = "Canada\"",
                      role = "cre",
                      email = "trea26@gmail.com"))
as necessary.
checkRd: (-1) relLik.Rd:16: Lost braces
    16 | \item{AIC(x), BIC(x) }{The \code{AIC} or ]code{BIC} value of the first model object.}
       |                                               ^
checkRd: (-1) relLik.Rd:17: Lost braces
    17 | \item{AIC(y), BIC(y) }{The \code{AIC} or ]code{BIC} value of the second model object.}
       |                                               ^
checkRd: (-1) bootstrap_pvals.Rd:78: Lost braces; missing escapes or markup?
    78 | $(n_{extreme} + 1) / (B + 1)$.
       |     ^
Found the following HTML validation problems:
plot.html:56:1 (plot.Rd:14): Warning: missing </ul> before </div>
print.coef_tbl.html:51:1 (print.coef_tbl.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Rune Haubo Bojesen Christensen <Rune.Haubo@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ham.Rd’:
    https://doi.org/10.1016/j.foodqual.2009.09.004
Found the following HTML validation problems:
rbindall.html:46:1 (rbindall.Rd:10): Warning: missing </ul> before </div>
rm_complete_terms.html:57:1 (rm_complete_terms.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Kvalnes <thomas.kvalnes@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Kvalnes",
                    role = c("aut", "cre"),
                    email = "thomas.kvalnes@ntnu.no")
as necessary.
Maintainer: ‘Marvin N. Wright <marv@wrig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marvin", "N."),
                    family = "Wright",
                    role = c("aut", "cre"),
                    email = "marv@wrig.de")
as necessary.
Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "Joseph", "L."),
                      family = "Schafer",
                      role = "aut"),
               person(given = c("Jing", "hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Found the following HTML validation problems:
Bsplines.html:56:1 (Bsplines.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.mlmm.html:63:1 (coef.mlmm.Rd:20): Warning: missing </ul> before </div>
iid.lmm.html:93:1 (iid.lmm.Rd:40): Warning: missing </ul> before </div>
restaureNA.html:59:1 (restaureNA.Rd:17): Warning: missing </ul> before </div>
summary.mlmm.html:80:1 (summary.mlmm.Rd:31): Warning: missing </ul> before </div>
summary.partialCor.html:59:1 (summary.partialCor.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pfactor.bernstein.html:172:1 (pfactor.bernstein.Rd:57): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:119:1 (inst/NEWS.Rd:47): Warning: missing </ul> before </div>
NEWS.html:46:1 (inst/NEWS.Rd:15): Warning: <h4> anchor "Improvement" already defined
checkRd: (-1) vcov.Rd:20: Lost braces
    20 | A list of matrix of estimated covariances in the linear ridge regression model for scalar or vector biasing parameter \code{K}{K} is produced. Each list element has row and column names corresponding to the parameter names given by the \code{coef(mod)}. List items are named correspond to values of biasing parameter \eqn{K}{K}.}
       |                                                                                                                               ^
Specified C++11: please drop specification unless essential
checkRd: (-1) lmSubsets-package.Rd:48: Escaped LaTeX specials: \&
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Francesco Pauli <francesco.pauli@deams.units.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francesco",
                    family = "Pauli",
                    role = c("aut", "cre"),
                    email = "francesco.pauli@deams.units.it",
                    comment = "see file LICENSEMEDIA for credits on sounds and images")
as necessary.
Maintainer: ‘Konrad Klotzke <omd.bms.utwente.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Paul",
                      family = "Fox",
                      role = "aut"),
               person(given = "Konrad",
                      family = "Klotzke",
                      role = c("aut", "cre"),
                      email = "omd.bms.utwente.stats@gmail.com"),
               person(given = c("Rinke", "Klein"),
                      family = "Entink",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
summaryIRTQ.html:50:1 (summaryIRTQ.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Wangshu Tu <wangshu.tu@carleton.ca>’

The Description field contains
  <arXiv:2011.06682>, and is designed for clustering compositional data.
  in papers: Tu and Subedi (2021) <arXiv:2101.01871> and Tu and Subedi
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
sim_data.html:67:1 (sim_data.Rd:20): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_carga_datos.R’ ‘mod_correlacion_utils.R’ ‘mod_dispersion.R’
    ‘mod_distribuciones.R’ ‘mod_distribuciones_fct.R’
    ‘mod_distribuciones_utils.R’ ‘mod_normal_utils.R’
Maintainer: ‘Hiroyuki Yamamoto <h.yama2396@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hiroyuki",
                    family = "Yamamoto",
                    role = c("aut", "cre"),
                    email = "h.yama2396@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Author
    Maintainer
Found the following HTML validation problems:
getPvalue.html:54:1 (getPvalue.Rd:14): Warning: missing </ul> before </div>
plotGaudermanModel.html:93:1 (plotGaudermanModel.Rd:39): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
File ‘lobstr/libs/lobstr.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘NAMED’, ‘OBJECT’,
    ‘PRCODE’, ‘PRENV’, ‘PRVALUE’, ‘R_lsInternal’, ‘Rf_findVarInFrame3’,
    ‘TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
tree_label.html:53:1 (tree_label.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Antonio Elías <antonioefz91@gmail.com>’

The Description field contains
  <arXiv:2007.16059>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/aefdz/localFDA
which should likely be
  https://github.com/aefdz/localFDA/issues
instead.
Maintainer: ‘Tore Selland Kleppe <tore.kleppe@uis.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tore", "Selland"),
                    family = "Kleppe",
                    role = c("aut", "cre"),
                    email = "tore.kleppe@uis.no")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Martin Walter <mf-walter@web.de>’

The Description field contains
  Pitkin (2013) <arXiv:1309.6392>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/xiangzhou09/localIV
which should likely be
  https://github.com/xiangzhou09/localIV/issues
instead.
checkRd: (-1) mte_tilde_at.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mte_tilde_at.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
dot-with_hf_token.html:53:1 (dot-with_hf_token.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
MarkovParameters.html:56:1 (MarkovParameters.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Walerian Sokolowski <walerian.sokolowski@wlogsolutions.com>’

The Description field contains
  LocalSolver (http://www.localsolver.com/) is an optimization engine
  developed by Innovation24 (http://www.innovation24.fr/). It is designed
  (http://www.wlogsolutions.com/en/) in collaboration with Decision
  (http://www.sgh.waw.pl/en/).
Please enclose URLs in angle brackets (<...>).
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘locate.R’
Maintainer: ‘Maximilian Zellner <zellnermaximilian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maximilian",
                    family = "Zellner",
                    role = c("aut", "cre"),
                    email = "zellnermaximilian@gmail.com")
as necessary.
Found the following HTML validation problems:
dat.html:49:1 (dat.Rd:14): Warning: missing </ul> before </div>
expit.html:50:1 (expit.Rd:15): Warning: missing </ul> before </div>
store.html:52:1 (store.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) FootballBrain.Rd:15: Lost braces; missing escapes or markup?
    15 |     { } \tab {or \code{FBConcuss}=football player with concussion history} \cr
       |     ^
checkRd: (-1) HappyPlanetIndex.Rd:14: Lost braces; missing escapes or markup?
    14 |     { } \tab {\code{5}=South Asia, \code{6}=East Asia, \code{7}=former Communist countries}\cr
       |     ^
checkRd: (-1) RockandRoll2012.Rd:17: Lost braces; missing escapes or markup?
    17 |     { } \tab {\code{Lifetime Achievement}, \code{Sideman}} \cr
       |     ^
checkRd: (-1) RockandRoll2015.Rd:17: Lost braces; missing escapes or markup?
    17 |     { } \tab {\code{Lifetime Achievement}, \code{Sideman}} \cr
       |     ^
checkRd: (-1) StudentSurvey.Rd:12: Lost braces; missing escapes or markup?
    12 |     \item{\code{Sex}}{code {F}=female or \code{M}=male}
       |                            ^
checkRd: (-1) SynchronizedMovement.Rd:16: Lost braces; missing escapes or markup?
    16 |     { } \tab {for High/Low Synchronization + High/Low Exertion}\cr
       |     ^
checkRd: (-1) TrafficFlow.Rd:25: Escaped LaTeX specials: \#
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PRDenEstC.Rd: bkde, dpik
  locpol.Rd: locpoly
  locpolSmoothers.Rd: locpoly
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = c("Sharon", "M."),
                      family = "Lutz",
                      role = "ctb"),
               person(given = "Christoph",
                      family = "Lange",
                      role = "ctb"))
as necessary.
Maintainer: ‘Jialu Ran <jialuran422@gmail.com>’

The Description field contains
  was proposed in Wang and Guo (2023) <arXiv:2008.08915>. For brain
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ilja M. Nolte <i.m.nolte@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ahmad",
                      family = "Vaez",
                      role = "aut"),
               person(given = c("Ilja", "M."),
                      family = "Nolte",
                      role = c("aut", "cre"),
                      email = "i.m.nolte@umcg.nl"),
               person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Rix <alexrix@umich.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘clmi.Rd’:
    https://doi.org/10.1097/EDE.0000000000001052
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bittermelon.R’ ‘lofi.Rd’
Found the following HTML validation problems:
BoxplotStrategybyPerformance.html:68:1 (BoxplotStrategybyPerformance.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaspar",
                      family = "Rufibach",
                      role = c("aut", "cre"),
                      email = "kaspar.rufibach@gmail.com"),
               person(given = "Lutz",
                      family = "Duembgen",
                      role = "aut",
                      email = "duembgen@stat.unibe.ch"))
as necessary.
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaspar",
                      family = "Rufibach",
                      role = c("aut", "cre"),
                      email = "kaspar.rufibach@gmail.com"),
               person(given = "Fadoua",
                      family = "Balabdaoui",
                      role = "aut",
                      email = "fadoua@ceremade.dauphine.fr"),
               person(given = "Hanna",
                      family = "Jankowski",
                      role = "aut",
                      email = "hkj@mathstat.yorku.ca"),
               person(given = "Kathrin",
                      family = "Weyermann",
                      role = "aut",
                      email = "kathrin.weyermann@bkw-fmb.ch"))
as necessary.
Found the following HTML validation problems:
appender_void.html:46:1 (appender_void.Rd:10): Warning: missing </ul> before </div>
delete_logger_index.html:50:1 (delete_logger_index.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
resetMsgComposer.html:46:1 (resetMsgComposer.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
write_ndjson.html:61:1 (write_ndjson.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Sneha Tody <sn.tody1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sneha",
                    family = "Tody",
                    role = c("aut", "cre"),
                    email = "sn.tody1@gmail.com")
as necessary.
Found the following HTML validation problems:
transform_data.html:89:1 (transform_data.Rd:40): Warning: missing </ul> before </div>
Maintainer: ‘Charles Kooperberg <clk@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Kooperberg",
                      role = c("aut", "cre"),
                      email = "clk@fredhutch.org"),
               person(given = "Ingo",
                      family = "Ruczinski",
                      role = "aut",
                      email = "ingo@jhu.edu"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘emayili_emailer.R’ ‘login_server.R’
Maintainer: ‘Zhiyong Zhang <johnnyzhz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haiyan",
                      family = "Liu",
                      role = "aut"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "johnnyzhz@gmail.com"))
as necessary.
Maintainer: ‘Andrew J. Landgraf <andland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "J."),
                    family = "Landgraf",
                    role = c("aut", "cre"),
                    email = "andland@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
log_like_Bernoulli.html:56:1 (log_like_Bernoulli.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Youjin Lee <youjin.lee@pennmedicine.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Youjin",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "youjin.lee@pennmedicine.upenn.edu")
as necessary.
Maintainer: ‘Manuel Escabias <escabias@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carmen", "Lucia", "Reina", "Ana", "Maria", "Aguilera"),
                      family = "<aaguiler@ugr.es>",
                      role = "aut",
                      email = "aaguiler@ugr.es"),
               person(given = "Manuel",
                      family = "Escabias",
                      role = c("aut", "cre"),
                      email = "escabias@ugr.es"))
as necessary.
Maintainer: ‘Thomas Wutzler <twutz@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wutzler",
                    role = c("aut", "cre"),
                    email = "twutz@bgc-jena.mpg.de")
as necessary.
Found the following HTML validation problems:
miscmethods.logitr.html:100:1 (miscmethods.logitr.Rd:56): Warning: missing </ul> before </div>
se.html:51:1 (se.Rd:13): Warning: missing </ul> before </div>
se.logitr.html:52:1 (se.logitr.Rd:13): Warning: missing </ul> before </div>
vcov.logitr.html:53:1 (vcov.logitr.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Andrew Thomas Jones <andrewthomasjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hien", "D."),
                      family = "Nguyen",
                      role = "aut"),
               person(given = c("Andrew", "T."),
                      family = "Jones",
                      role = "aut"),
               person(given = c("Geoffrey", "J."),
                      family = "McLachlan",
                      role = "aut"),
               person(given = c("Andrew", "Thomas"),
                      family = "Jones",
                      role = "cre",
                      email = "andrewthomasjones@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) logdensity.Rd:33: Lost braces; missing escapes or markup?
    33 | The function \code{logdensity} computes kernel density estimates (KDE) of strictly positive distributions by performing the KDE in the log domain and then transforming the result back again. The syntax and function structure is largely borrowed from the function \code{density} in package {stats}.
       |                                                                                                                                                                                                                                                                                                  ^
checkRd: (-1) logdensity_fft.Rd:33: Lost braces; missing escapes or markup?
    33 | The function \code{logdensity_fft} computes kernel density estimates (KDE) of strictly positive distributions by performing the KDE via fast fourier transform utilizing the \code{fft} function. The syntax and function structure is largely borrowed from the function \code{density} in package {stats}.
       |                                                                                                                                                                                                                                                                                                     ^
Maintainer: ‘Thomas Wutzler <twutz@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wutzler",
                    role = c("aut", "cre"),
                    email = "twutz@bgc-jena.mpg.de")
as necessary.
Found the following HTML validation problems:
getCorrMatFromAcf.html:51:1 (getCorrMatFromAcf.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Phillip Labuschagne <philliplab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Phillip",
                    family = "Labuschagne",
                    role = c("aut", "cre"),
                    email = "philliplab@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘logger.R’
Maintainer: ‘Guy Ashiri-Prossner <guy.ashiri@mail.huji.ac.il>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guy",
                    family = "Ashiri-Prossner",
                    role = c("aut", "cre"),
                    email = "guy.ashiri@mail.huji.ac.il")
as necessary.
Found the following HTML validation problems:
as.network.html:44:1 (as.network.Rd:9): Warning: missing </ul> before </div>
print.gofit.html:51:1 (print.gofit.Rd:12): Warning: missing </ul> before </div>
print.lolog.html:51:1 (print.lolog.Rd:12): Warning: missing </ul> before </div>
print.lologVariationalFit.html:51:1 (print.lologVariationalFit.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Eric Bridgeford <ericwb95@gmail.com>’

The Description field contains
  et al. (2017) <arXiv:1709.01233>, we provide several methods for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Madan G Kundu <madan_g.kundu@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Madan", "G"),
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "madan_g.kundu@yahoo.com")
as necessary.
Found the following HTML validation problems:
ConModelTest_cont.html:64:1 (ConModelTest_cont.Rd:19): Warning: missing </ul> before </div>
ConModelTest_disc.html:64:1 (ConModelTest_disc.Rd:19): Warning: missing </ul> before </div>
NuModelTest_cont.html:60:1 (NuModelTest_cont.Rd:17): Warning: missing </ul> before </div>
NuModelTest_disc.html:60:1 (NuModelTest_disc.Rd:17): Warning: missing </ul> before </div>
cliff_cal.html:60:1 (cliff_cal.Rd:17): Warning: missing </ul> before </div>
correlation_posthoc.html:62:1 (correlation_posthoc.Rd:18): Warning: missing </ul> before </div>
data_preprocess.html:62:1 (data_preprocess.Rd:18): Warning: missing </ul> before </div>
factor_p_cal.html:70:1 (factor_p_cal.Rd:22): Warning: missing </ul> before </div>
final_result_summarize_cont.html:133:1 (final_result_summarize_cont.Rd:63): Warning: missing </ul> before </div>
final_result_summarize_disc.html:148:1 (final_result_summarize_disc.Rd:72): Warning: missing </ul> before </div>
fix_name_fun.html:47:1 (fix_name_fun.Rd:11): Warning: missing </ul> before </div>
random_neg_ctrl_cont.html:100:1 (random_neg_ctrl_cont.Rd:37): Warning: missing </ul> before </div>
random_neg_ctrl_disc.html:104:1 (random_neg_ctrl_disc.Rd:39): Warning: missing </ul> before </div>
rm_sparse_cont.html:82:1 (rm_sparse_cont.Rd:28): Warning: missing </ul> before </div>
rm_sparse_disc.html:82:1 (rm_sparse_disc.Rd:28): Warning: missing </ul> before </div>
unlist_table.html:56:1 (unlist_table.Rd:15): Warning: missing </ul> before </div>
wilcox_posthoc.html:83:1 (wilcox_posthoc.Rd:33): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.elife_tstab.html:76:1 (plot.elife_tstab.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Zhuowei Sun <sunzw21@mails.jlu.edu.cn>’

The Description field contains
  this package: Sun, Z. et al. (2023) <arXiv:2305.17715> and Liu, C. et
  al. (2023) <arXiv:2305.17662>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Found the following HTML validation problems:
bay.exp.html:46:1 (bay.exp.Rd:10): Warning: missing </ul> before </div>
bay.fbm.html:45:1 (bay.fbm.Rd:10): Warning: missing </ul> before </div>
cov.exp.html:45:1 (cov.exp.Rd:10): Warning: missing </ul> before </div>
cov.fbm.html:45:1 (cov.fbm.Rd:10): Warning: missing </ul> before </div>
gam_exp.html:45:1 (gam_exp.Rd:10): Warning: missing </ul> before </div>
gam_fbm.html:45:1 (gam_fbm.Rd:10): Warning: missing </ul> before </div>
logV.exp.html:45:1 (logV.exp.Rd:10): Warning: missing </ul> before </div>
logV.fbm.html:45:1 (logV.fbm.Rd:10): Warning: missing </ul> before </div>
opti.FBM.html:45:1 (opti.FBM.Rd:10): Warning: missing </ul> before </div>
opti.FBMreem.html:45:1 (opti.FBMreem.Rd:10): Warning: missing </ul> before </div>
opti.exp.html:45:1 (opti.exp.Rd:10): Warning: missing </ul> before </div>
sig.exp.html:45:1 (sig.exp.Rd:10): Warning: missing </ul> before </div>
sig.fbm.html:45:1 (sig.fbm.Rd:10): Warning: missing </ul> before </div>
Running examples in ‘longreadvqs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AAcompare
> ### Title: Comparing viral quasispecies diversity metrics at amino acid
> ###   level
> ### Aliases: AAcompare
> 
> ### ** Examples
> 
> ## Locate input FASTA files-----------------------------------------------------------------------
> sample1filepath <- system.file("extdata", "s1.fasta", package = "longreadvqs")
> sample2filepath <- system.file("extdata", "s2.fasta", package = "longreadvqs")
> 
> ## Prepare data for viral quasispecies comparison between two samples-----------------------------
> set.seed(123)
> sample1 <- vqsassess(sample1filepath, pct = 5, samsize = 50, label = "sample1")
Error in (function (cond)  : 
  error in evaluating the argument 'pattern' in selecting a method for function 'nmismatch': pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
  formally defunct in Biostrings >= 2.77.1. Please call
  pwalign::pairwiseAlignment() to get rid of this error.
Calls: vqsassess ... pairwiseAlignment -> .call_fun_in_pwalign -> .Defunct
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘longreadvqs-vignette.Rmd’ using rmarkdown

Quitting from longreadvqs-vignette.Rmd:44-47 [cmd0]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! error in evaluating the argument 'pattern' in selecting a method for function 'nmismatch': pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
  formally defunct in Biostrings >= 2.77.1. Please call
  pwalign::pairwiseAlignment() to get rid of this error.
---
Backtrace:
    ▆
 1. ├─longreadvqs::vqssub(sample1, pct = 10, label = "sample1")
 2. │ ├─Biostrings::nmismatch(pairwiseAlignment(hapre$seqs, hapre$seqs[1]))
 3. │ └─Biostrings::pairwiseAlignment(hapre$seqs, hapre$seqs[1])
 4. │   └─Biostrings:::.call_fun_in_pwalign("pairwiseAlignment", ...)
 5. │     └─base::.Defunct(msg = wmsg(msg))
 6. │       └─base::stop(...)
 7. └─base (local) `<fn>`(`<dfnctErr>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'longreadvqs-vignette.Rmd' failed with diagnostics:
error in evaluating the argument 'pattern' in selecting a method for function 'nmismatch': pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
  formally defunct in Biostrings >= 2.77.1. Please call
  pwalign::pairwiseAlignment() to get rid of this error.
--- failed re-building ‘longreadvqs-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘longreadvqs-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Alessio Farcomeni <alessio.farcomeni@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alessio",
                    family = "Farcomeni",
                    role = c("aut", "cre"),
                    email = "alessio.farcomeni@uniroma1.it")
as necessary.
Maintainer: ‘Ross Jacobucci <rcjacobuc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ross",
                      family = "Jacobucci",
                      role = c("aut", "cre"),
                      email = "rcjacobuc@gmail.com"),
               person(given = "Sam",
                      family = "Stewart",
                      role = "aut"),
               person(given = "Mohamed",
                      family = "Abdolell",
                      role = "aut"),
               person(given = "Sarfaraz",
                      family = "Serang",
                      role = "ctb"),
               person(given = "Gabriela",
                      family = "Stegmann",
                      role = "ctb"))
as necessary.
Found the following HTML validation problems:
lrpPlot.html:58:1 (lrpPlot.Rd:16): Warning: missing </ul> before </div>
plot.lrp.html:51:1 (plot.lrp.Rd:12): Warning: missing </ul> before </div>
summary.lrp.html:51:1 (summary.lrp.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
geom_imageGlyph-deprecated.html:230:1 (geom_imageGlyph-deprecated.Rd:143): Warning: missing </ul> before </div>
geom_pointrangeGlyph-deprecated.html:200:1 (geom_pointrangeGlyph-deprecated.Rd:120): Warning: missing </ul> before </div>
geom_serialAxesGlyph-deprecated.html:232:1 (geom_serialAxesGlyph-deprecated.Rd:140): Warning: missing </ul> before </div>
geom_textGlyph-deprecated.html:185:1 (geom_textGlyph-deprecated.Rd:111): Warning: missing </ul> before </div>
get_scaledData.html:75:1 (get_scaledData.Rd:29): Warning: missing </ul> before </div>
is.CoordPolar.html:46:1 (is.CoordPolar.Rd:10): Warning: missing </ul> before </div>
is.l_ggplot.html:46:1 (is.l_ggplot.Rd:10): Warning: missing </ul> before </div>
itemLabel-deprecated.html:52:1 (itemLabel-deprecated.Rd:15): Warning: missing </ul> before </div>
lggplot-deprecated.html:60:1 (lggplot-deprecated.Rd:19): Warning: missing </ul> before </div>
loonLayer.html:84:1 (loonLayer.Rd:33): Warning: missing </ul> before </div>
selecting-deprecated.html:60:1 (selecting-deprecated.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_grid_size.html:69:1 (as_grid_size.Rd:26): Warning: missing </ul> before </div>
facet_grid_layout.html:168:1 (facet_grid_layout.Rd:89): Warning: missing </ul> before </div>
facet_separate_layout.html:85:1 (facet_separate_layout.Rd:35): Warning: missing </ul> before </div>
facet_wrap_layout.html:172:1 (facet_wrap_layout.Rd:91): Warning: missing </ul> before </div>
l_after_idle.html:51:1 (l_after_idle.Rd:10): Warning: missing </ul> before </div>
l_graphswitch_ids.html:48:1 (l_graphswitch_ids.Rd:10): Warning: missing </ul> before </div>
l_scaleto_active.html:47:1 (l_scaleto_active.Rd:10): Warning: missing </ul> before </div>
l_scaleto_plot.html:48:1 (l_scaleto_plot.Rd:10): Warning: missing </ul> before </div>
l_scaleto_selected.html:48:1 (l_scaleto_selected.Rd:10): Warning: missing </ul> before </div>
l_scaleto_world.html:48:1 (l_scaleto_world.Rd:10): Warning: missing </ul> before </div>
l_zoom.html:52:1 (l_zoom.Rd:12): Warning: missing </ul> before </div>
print.measures1d.html:52:1 (print.measures1d.Rd:12): Warning: missing </ul> before </div>
print.measures2d.html:52:1 (print.measures2d.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) loon.shiny.Rd:93-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loon.shiny.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loon.shiny.Rd:97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loon.shiny.Rd:98-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loon.shiny.Rd:103-108: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loon.shiny.Rd:105: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loon.shiny.Rd:106: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  loon.shiny.Rd: ggplot2loon, grid.arrange, shinyApp, runApp
  shiny.loon-deprecated.Rd: ggplot2loon, grid.arrange, shinyApp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
shiny.loon-deprecated.html:143:1 (shiny.loon-deprecated.Rd:73): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  l_tour.Rd: grand_tour, dependence_tour, frozen_tour, guided_tour,
    planned_tour
  tour_pairs.Rd: l_pairs
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alexis Dinno <alexis.dinno@pdx.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexis",
                    family = "Dinno",
                    role = c("aut", "cre"),
                    email = "alexis.dinno@pdx.edu")
as necessary.
Found the following HTML validation problems:
importance_sampling.html:125:1 (importance_sampling.Rd:71): Warning: missing </ul> before </div>
nobs.psis_loo_ss.html:51:1 (nobs.psis_loo_ss.Rd:12): Warning: missing </ul> before </div>
old-extractors.html:56:1 (old-extractors.Rd:17): Warning: missing </ul> before </div>
print_dims.html:68:1 (print_dims.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xi",
                      family = "LUO",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following HTML validation problems:
lotriAsExpression.html:69:1 (lotriAsExpression.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Sara Algeri <salgeri@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Algeri",
                      role = c("aut", "cre"),
                      email = "salgeri@umn.edu"),
               person(given = "Haoran",
                      family = "Liu",
                      role = "aut",
                      email = "liu00728@umn.edu"))
as necessary.

The Description field contains
  S. (2019) <arXiv:1906.06615>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
c_x.html:66:1 (c_x.Rd:20): Warning: missing </ul> before </div>
mvec.html:51:1 (mvec.Rd:12): Warning: missing </ul> before </div>
normal_dgps.html:58:1 (normal_dgps.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Daniela M Witten <dwitten@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M"),
                      family = "Witten",
                      role = c("aut", "cre"),
                      email = "dwitten@uw.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Kaijun Wang <kaijun.wang@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijun.wang@temple.edu"))
as necessary.
Found the following HTML validation problems:
print.summary.lphom.html:59:1 (print.summary.lphom.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plot.lpirfs_lin_iv_obj.html:51:1 (plot.lpirfs_lin_iv_obj.Rd:12): Warning: missing </ul> before </div>
plot.lpirfs_lin_obj.html:51:1 (plot.lpirfs_lin_obj.Rd:12): Warning: missing </ul> before </div>
plot.lpirfs_lin_panel_obj.html:51:1 (plot.lpirfs_lin_panel_obj.Rd:12): Warning: missing </ul> before </div>
plot.lpirfs_nl_iv_obj.html:51:1 (plot.lpirfs_nl_iv_obj.Rd:12): Warning: missing </ul> before </div>
plot.lpirfs_nl_obj.html:51:1 (plot.lpirfs_nl_obj.Rd:12): Warning: missing </ul> before </div>
plot.lpirfs_nl_panel_obj.html:51:1 (plot.lpirfs_nl_panel_obj.Rd:12): Warning: missing </ul> before </div>
summary.lpirfs_lin_iv_obj.html:51:1 (summary.lpirfs_lin_iv_obj.Rd:12): Warning: missing </ul> before </div>
summary.lpirfs_lin_obj.html:51:1 (summary.lpirfs_lin_obj.Rd:12): Warning: missing </ul> before </div>
summary.lpirfs_lin_panel_obj.html:51:1 (summary.lpirfs_lin_panel_obj.Rd:12): Warning: missing </ul> before </div>
summary.lpirfs_nl_iv_obj.html:51:1 (summary.lpirfs_nl_iv_obj.Rd:12): Warning: missing </ul> before </div>
summary.lpirfs_nl_obj.html:51:1 (summary.lpirfs_nl_obj.Rd:12): Warning: missing </ul> before </div>
summary.lpirfs_nl_panel_obj.html:51:1 (summary.lpirfs_nl_panel_obj.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Kaijun Wang <kaijunwang.19@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijunwang.19@gmail.com"))
as necessary.

The Description field contains
  (2020, Biometrika); <arXiv:1810.01724>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jeffrey Endelman <endelman@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Endelman",
                    role = c("aut", "cre"),
                    email = "endelman@wisc.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David A. Schoenfeld <Dschoenfeld@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "A."),
                    family = "Schoenfeld",
                    role = c("aut", "cre"),
                    email = "dschoenfeld@mgh.harvard.edu")
as necessary.
Maintainer: ‘Kaijun Wang <kaijunwang.19@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Kaijun",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "kaijunwang.19@gmail.com"))
as necessary.

The Description field contains
  S., and Wang, K (2021, <arXiv:2004.09588>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiangyu Zhang <zhan6004@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhan6004@umn.edu"),
               person(given = "Sara",
                      family = "Algeri",
                      role = "aut",
                      email = "salgeri@umn.edu"))
as necessary.

The Description field contains
  Algeri S. and Zhang X. (2020) <arXiv:2005.13011>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Rong Li <rong_li@ruc.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingcong",
                      family = "Wu",
                      role = "aut"),
               person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Rong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "rong_li@ruc.edu.cn"))
as necessary.
Found the following HTML validation problems:
plot.lqmix.html:51:1 (plot.lqmix.Rd:12): Warning: missing </ul> before </div>
plot.search_lqmix.html:51:1 (plot.search_lqmix.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Marco Geraci <marco.geraci@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Geraci",
                    role = c("aut", "cre"),
                    email = "marco.geraci@uniroma1.it")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "chedgala@espol.edu.ec"),
               person(given = "Luis",
                      family = "Benites",
                      role = "aut",
                      email = "lbenitess@pucp.edu.pe"),
               person(given = "Marcelo",
                      family = "Bourguignon",
                      role = "aut",
                      email = "m.p.bourguignon@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@uconn.edu"))
as necessary.
Maintainer: ‘Rick Wargo <lrequire@rickwargo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rick",
                    family = "Wargo",
                    role = c("aut", "cre"),
                    email = "lrequire@rickwargo.com")
as necessary.
Maintainer: ‘Adam Mantz <amantz@slac.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Mantz",
                    role = c("aut", "cre"),
                    email = "amantz@slac.stanford.edu")
as necessary.
Found the following HTML validation problems:
03_StandardSetting__20220517.html:285:1 (03_StandardSetting__20220517.Rd:413): Warning: <h5> anchor "Listing-1+3A-Feedback" already defined
03_StandardSetting__20220517.html:309:1 (03_StandardSetting__20220517.Rd:450): Warning: <h5> anchor "Listing-2+3A-Cut-Score-Berechnung" already defined
LSAmitR-methods.html:80:1 (LSAmitR-methods.Rd:40): Warning: missing </ul> before </div>
Maintainer: ‘Fridolin Wild <wild@brookes.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fridolin",
                    family = "Wild",
                    role = c("aut", "cre"),
                    email = "wild@brookes.ac.uk")
as necessary.
checkRd: (-1) specialchars.Rd:6: Escaped LaTeX specials: \&
Found the following HTML validation problems:
check_condition.html:56:1 (check_condition.Rd:16): Warning: missing </ul> before </div>
cov_yfz_gen.html:70:1 (cov_yfz_gen.Rd:22): Warning: missing </ul> before </div>
cov_yxw_gen.html:62:1 (cov_yxw_gen.Rd:18): Warning: missing </ul> before </div>
cov_yxz_gen.html:74:1 (cov_yxz_gen.Rd:24): Warning: missing </ul> before </div>
gen_X_W_cluster.html:54:1 (gen_X_W_cluster.Rd:14): Warning: missing </ul> before </div>
gen_cat_prop.html:54:1 (gen_cat_prop.Rd:14): Warning: missing </ul> before </div>
lambda_gen.html:63:1 (lambda_gen.Rd:19): Warning: missing </ul> before </div>
pt_bis_conversion.html:50:1 (pt_bis_conversion.Rd:12): Warning: missing </ul> before </div>
questionnaire_gen_family.html:82:1 (questionnaire_gen_family.Rd:33): Warning: missing </ul> before </div>
questionnaire_gen_polychoric.html:68:1 (questionnaire_gen_polychoric.Rd:21): Warning: missing </ul> before </div>
sample_from.html:58:1 (sample_from.Rd:16): Warning: missing </ul> before </div>
split_cat_prop.html:53:1 (split_cat_prop.Rd:15): Warning: missing </ul> before </div>
validate_questionnaire_gen.html:95:1 (validate_questionnaire_gen.Rd:41): Warning: missing </ul> before </div>
whitelist_message.html:46:1 (whitelist_message.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Guangwei Weng <wengx076@umn.edu>’

The Description field contains
  matrix. See Doss and Weng (2018) <arXiv:1806.00731> for more detail.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Fella Ulandari <16.9134@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fella",
                      family = "Ulandari",
                      role = c("aut", "cre"),
                      email = "16.9134@stis.ac.id"),
               person(given = "Robert",
                      family = "Kurniawan",
                      role = "aut"))
as necessary.
Maintainer: ‘Bjoern Schwalb <schwalb.bjoern@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bjoern",
                      family = "Schwalb",
                      role = c("aut", "cre"),
                      email = "schwalb.bjoern@gmail.com"),
               person(given = "Achim",
                      family = "Tresch",
                      role = "aut"),
               person(given = "Phillipp",
                      family = "Torkler",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Duemcke",
                      role = "ctb"),
               person(given = "Carina",
                      family = "Demel",
                      role = "ctb"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "ctb"),
               person(given = "Bill",
                      family = "Venables",
                      role = "ctb"))
as necessary.
Maintainer: ‘Sergio Andrés Cabrera Miranda <sergio05acm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sergio", "Andrés", "Cabrera"),
                      family = "Miranda",
                      role = c("aut", "cre"),
                      email = "https://orcid.org/0000-0002-8126-8521"),
               person(given = c("Juan", "Gabriel", "Triana"),
                      family = "Laverde",
                      role = "aut",
                      email = "https://orcid.org/0000-0003-2991-6082"))
as necessary.
Found the following HTML validation problems:
lsirm.formula.html:51:1 (lsirm.formula.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Mikhail A. Beketov <mikhail.beketov@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "A."),
                    family = "Beketov",
                    role = c("aut", "cre"),
                    email = "mikhail.beketov@gmx.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘LSMonteCarlo-package.Rd’:
    \keyword{ 
      Quantitative Finance
      Option pricing
      Mon [TRUNCATED]
Found the following HTML validation problems:
plugin.html:46:1 (plugin.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Gereon Poschmann <gereon.poschmann@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rafael",
                      family = "Dellen",
                      role = "aut"),
               person(given = c("with", "contributions", "of", "Fabian"),
                      family = "Kruse",
                      role = "aut"),
               person(given = "Gereon",
                      family = "Poschmann",
                      role = "cre",
                      email = "gereon.poschmann@hhu.de"))
as necessary.
Maintainer: ‘Danielle Navarro <djnavarro@protonmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mehdi Sarparast <mehdisarparast@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mehdi",
                    family = "Sarparast",
                    role = c("aut", "cre"),
                    email = "mehdisarparast@gmail.com")
as necessary.
Maintainer: ‘Arvin Satwani <arvinsatwani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhezhen",
                      family = "Jin",
                      role = "aut",
                      email = "zj7@columbia.edu"),
               person(given = "Arvin",
                      family = "Satwani",
                      role = c("aut", "cre"),
                      email = "arvinsatwani@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_plot_labels.Rd’ ‘datasim_helpers.R’ ‘datasim_make.Rd’
    ‘model_eval.R’ ‘model_eval.Rd’ ‘model_plot.R’ ‘model_skeleton.Rd’
    ‘model_values.R’ ‘model_values.Rd’ ‘mosaic_cull_for_do.Rd’ ‘ntiles.R’
    ‘ntiles.Rd’ ‘point_plot.R’ ‘point_plot.Rd’ ‘print.R’
    ‘random_terms.Rd’ ‘regression_summaries.Rd’ ‘sims.R’
    ‘statistical_annotations.Rd’ ‘trials.R’ ‘trials.Rd’ ‘zero_one.Rd’
Found the following HTML validation problems:
model_family.html:59:1 (model_family.Rd:18): Warning: missing </ul> before </div>
print.datasim.html:55:1 (print.datasim.Rd:14): Warning: missing </ul> before </div>
print.model_object.html:51:1 (print.model_object.Rd:12): Warning: missing </ul> before </div>
split_tilde.html:46:1 (split_tilde.Rd:10): Warning: missing </ul> before </div>
utils.html:60:1 (utils.Rd:24): Warning: missing </ul> before </div>
checkRd: (-1) LS.kalman.Rd:65: Escaped LaTeX specials: \&
checkRd: (-1) spectral.density.Rd:55: Escaped LaTeX specials: \&
Maintainer: ‘Peiliang Bai <baipl92@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peiliang",
                    family = "Bai",
                    role = c("aut", "cre"),
                    email = "baipl92@ufl.edu")
as necessary.
Found the following HTML validation problems:
as.coefficients_textmodel.html:48:1 (as.coefficients_textmodel.Rd:11): Warning: missing </ul> before </div>
as.statistics_textmodel.html:46:1 (as.statistics_textmodel.Rd:10): Warning: missing </ul> before </div>
as.summary.textmodel.html:46:1 (as.summary.textmodel.Rd:10): Warning: missing </ul> before </div>
coef.textmodel_lss.html:54:1 (coef.textmodel_lss.Rd:15): Warning: missing </ul> before </div>
cohesion.html:50:1 (cohesion.Rd:12): Warning: missing </ul> before </div>
diagnosys.html:50:1 (diagnosys.Rd:12): Warning: missing </ul> before </div>
print.coefficients_textmodel.html:58:1 (print.coefficients_textmodel.Rd:16): Warning: missing </ul> before </div>
print.statistics_textmodel.html:56:1 (print.statistics_textmodel.Rd:15): Warning: missing </ul> before </div>
print.summary.textmodel.html:56:1 (print.summary.textmodel.Rd:15): Warning: missing </ul> before </div>
textplot_components.html:63:1 (textplot_components.Rd:21): Warning: missing </ul> before </div>
textplot_simil.html:46:1 (textplot_simil.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ocheredko Oleksandr <Ocheredko@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ocheredko",
                    family = "Oleksandr",
                    role = c("aut", "cre"),
                    email = "ocheredko@yahoo.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘smr_custom.R’ ‘smr_major.R’ ‘smr_minor.R’
Maintainer: ‘Martin Blostein <martin.blostein@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Blostein",
                      role = c("aut", "cre"),
                      email = "martin.blostein@gmail.com"),
               person(given = "Tatjana",
                      family = "Miljkovic",
                      role = "aut",
                      email = "miljkot@miamioh.edu"))
as necessary.
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nikola Kasprikova <nikola.kasprikova@lf1.cuni.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nikola",
                    family = "Kasprikova",
                    role = c("aut", "cre"),
                    email = "nikola.kasprikova@lf1.cuni.cz")
as necessary.
checkRd: (-1) k.Rd:27: Lost braces
    27 |  code{\link{ACSPlan-class}}, 
       |      ^
Maintainer: ‘Dong Liang <dliang@umces.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Naresh",
                      family = "Kumar",
                      role = "aut"),
               person(given = "Dong",
                      family = "Liang",
                      role = c("aut", "cre"),
                      email = "dliang@umces.edu"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ltsspca.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
Deprecated.html:45:1 (Deprecated.Rd:10): Warning: missing </ul> before </div>
format_ISO8601_precision_check.html:61:1 (format_ISO8601_precision_check.Rd:21): Warning: missing </ul> before </div>
checkRd: (-1) Upload_to_db.Rd:43: Lost braces
    43 | lucas]{Connect_to_db}
       |       ^
Found the following HTML validation problems:
logit.html:60:1 (logit.Rd:20): Warning: missing </ul> before </div>
loglikC_bin.html:95:1 (loglikC_bin.Rd:39): Warning: missing </ul> before </div>
matchingScore_C.html:73:1 (matchingScore_C.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Maninder Singh Dhillon <manidhillon1989@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maninder", "Singh"),
                      family = "Dhillon",
                      role = c("aut", "cre"),
                      email = "manidhillon1989@gmail.com"),
               person(given = "Thorsten",
                      family = "Dahms",
                      role = "ctb"),
               person(given = "Leon",
                      family = "Nill",
                      role = "ctb"))
as necessary.
Maintainer: ‘Simon Moulds <sim.moulds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Moulds",
                    role = c("aut", "cre"),
                    email = "sim.moulds@gmail.com")
as necessary.
Found the following HTML validation problems:
show-methods.html:62:1 (show-methods.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Siyu Tao <siyutao2020@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyu",
                      family = "Tao",
                      role = c("aut", "cre"),
                      email = "siyutao2020@u.northwestern.edu"),
               person(given = "Yichi",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("Daniel", "W."),
                      family = "Apley",
                      role = "aut"),
               person(given = "Wei",
                      family = "Chen",
                      role = "aut"))
as necessary.

The Description field contains
  Chen, and Daniel W. Apley (2018) <arXiv:1806.07504>. The package is
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) LVGP_fit.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_fit.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LVGP_predict.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) math_example.Rd:21: Lost braces
    21 | Data are sampled from the modified math function based on the first example in the paper listed in code{references}.
       |                                                                                                        ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lvmcomp.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) StEM_pcirt.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{response}{N by J matrix containing {0,1,...,M-1} responses, where N is the number of respondents and J is the number of items.}
       |                                          ^
Found the following HTML validation problems:
accuracy_means_params.html:51:1 (accuracy_means_params.Rd:14): Warning: missing </ul> before </div>
accuracy_params.html:46:1 (accuracy_params.Rd:11): Warning: missing </ul> before </div>
new_lvmisc_accuracy.html:50:1 (new_lvmisc_accuracy.Rd:12): Warning: missing </ul> before </div>
new_lvmisc_cv.html:50:1 (new_lvmisc_cv.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Found the following HTML validation problems:
drawLVplot.html:95:1 (drawLVplot.Rd:41): Warning: missing </ul> before </div>
lvtable.html:54:1 (lvtable.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘classify.R’ ‘extract.R’ ‘score.R’
Found the following HTML validation problems:
lwgeom_make_valid.html:46:1 (lwgeom_make_valid.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Sean Jewell <swjewell@uw.edu>’

The Description field contains
  <arXiv:1703.08644>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
plot.cvSpike.html:51:1 (plot.cvSpike.Rd:12): Warning: missing </ul> before </div>
print.cvSpike.html:51:1 (print.cvSpike.Rd:12): Warning: missing </ul> before </div>
print.estimatedSpikes.html:51:1 (print.estimatedSpikes.Rd:12): Warning: missing </ul> before </div>
print.simdata.html:51:1 (print.simdata.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jenise Swall <jswall@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jenise",
                    family = "Swall",
                    role = c("aut", "cre"),
                    email = "jswall@vcu.edu")
as necessary.
Found the following HTML validation problems:
print-methods.html:47:1 (print-methods.Rd:12): Warning: missing </ul> before </div>
show-methods.html:47:1 (show-methods.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Andrew Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Found the following HTML validation problems:
extract-methods.html:93:1 (extract-methods.Rd:53): Warning: missing </ul> before </div>
print-methods.html:127:1 (print-methods.Rd:80): Warning: missing </ul> before </div>
Maintainer: ‘Dave Zes <zesdave@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dave",
                    family = "Zes",
                    role = c("aut", "cre"),
                    email = "zesdave@gmail.com")
as necessary.
Maintainer: ‘Daniel Falbel <daniel@rstudio.com>’

The Description field contains
  (2020) <arxiv:2101.11075>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘AC Del Re <acdelre@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew Cefalu <Matthew_Cefalu@rand.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Cefalu",
                    role = c("aut", "cre"),
                    email = "matthew_cefalu@rand.org")
as necessary.
Found the following HTML validation problems:
print.madr.enumerate.html:51:1 (print.madr.enumerate.Rd:12): Warning: missing </ul> before </div>
print.madr.mcmc.html:51:1 (print.madr.mcmc.Rd:12): Warning: missing </ul> before </div>
print.summary.madr.enumerate.html:51:1 (print.summary.madr.enumerate.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Doulaye Dembele <doulaye@igbmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Doulaye",
                    family = "Dembele",
                    role = c("aut", "cre"),
                    email = "doulaye@igbmc.fr")
as necessary.
Maintainer: ‘Remko Duursma <remkoduursma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Remko",
                    family = "Duursma",
                    role = c("aut", "cre"),
                    email = "remkoduursma@gmail.com")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:40:1 (inst/NEWS.Rd:11): Warning: missing </ul> before </div>
Found the following significant warnings:
  fitglmm.cpp:507:25: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MAGEE.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following HTML validation problems:
magic_for.html:67:1 (magic_for.Rd:21): Warning: missing </ul> before </div>
put.html:50:1 (put.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_EBImage.html:47:1 (as_EBImage.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Simon Garnier <garnier@njit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Garnier",
                    role = c("aut", "cre"),
                    email = "garnier@njit.edu")
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  hmc.cpp:194:10: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  hmc.cpp:207:10: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/magi.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Author field differs from that derived from Authors@R
  Author:    ‘Shihao Yang [aut, cre] (<https://orcid.org/0000-0003-3910-4969>), Samuel W.K. Wong [aut] (<https://orcid.org/0000-0002-7325-7267>), S.C. Kou [ctb, cph] (Contributor of MAGI method development)’
  Authors@R: ‘Shihao Yang [aut, cre] (ORCID: <https://orcid.org/0000-0003-3910-4969>), Samuel W.K. Wong [aut] (ORCID: <https://orcid.org/0000-0002-7325-7267>), S.C. Kou [ctb, cph] (role: Contributor of MAGI method development)’
Maintainer: ‘John Chaston <john_chaston@byu.edu>’

Found the following (possibly) invalid file URI:
  URI: www.orthomcl.org
    From: inst/doc/using_mag.html
Maintainer: ‘Mark Clements <mark.clements@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Clements",
                      role = c("aut", "cre"),
                      email = "mark.clements@ki.se"),
               person(given = "Dianne",
                      family = "O'Connell",
                      role = "aut"))
as necessary.
File ‘magrittr/libs/magrittr.so’:
  Found non-API calls to R: ‘Rf_allocSExp’, ‘SET_PRCODE’, ‘SET_PRENV’,
    ‘SET_PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
pipe_eager_lexical.html:54:1 (pipe_eager_lexical.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
reformat.html:73:1 (reformat.Rd:29): Warning: missing </ul> before </div>
Maintainer: ‘Rahul Premraj <r.premraj+mailR@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rahul",
                    family = "Premraj",
                    role = c("aut", "cre"),
                    email = "r.premraj+mailr@gmail.com")
as necessary.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Alex J. Krebs <Krebs.AlexJ@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J."),
                    family = "Krebs",
                    role = c("aut", "cre"),
                    email = "krebs.alexj@gmail.com")
as necessary.
Found the following HTML validation problems:
extra.html:46:1 (extra.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mehrab Ghanat Bari <m.ghanatbari@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mehrab", "Ghanat"),
                    family = "Bari",
                    role = c("aut", "cre"),
                    email = "m.ghanatbari@gmail.com")
as necessary.
Found the following HTML validation problems:
autoplot.default.html:51:1 (autoplot.default.Rd:12): Warning: missing </ul> before </div>
extractLayerValues.html:54:1 (extractLayerValues.Rd:14): Warning: missing </ul> before </div>
isMaskedRaster.html:46:1 (isMaskedRaster.Rd:10): Warning: missing </ul> before </div>
listData.html:54:1 (listData.Rd:14): Warning: missing </ul> before </div>
listPoints.html:55:1 (listPoints.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mallet.topic.model.read.html:56:1 (mallet.topic.model.read.Rd:21): Warning: missing </ul> before </div>
save.mallet.instances.html:52:1 (save.mallet.instances.Rd:15): Warning: missing </ul> before </div>
save.mallet.state.html:53:1 (save.mallet.state.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-onAttach.html:46:1 (dot-onAttach.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Imanuel Costigan <i.costigan@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Imanuel",
                    family = "Costigan",
                    role = c("aut", "cre"),
                    email = "i.costigan@me.com")
as necessary.
checkRd: (-1) create_terminal_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                              ^
checkRd: (-1) create_terminal_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                                                   ^
checkRd: (-1) full_repo_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                              ^
checkRd: (-1) full_repo_dir.Rd:11: Lost braces; missing escapes or markup?
    11 | the following child folders: {repo_base}/bin/ and {repo_base}/src/. A
       |                                                   ^
Maintainer: ‘Tao Wang <tao.wang@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "tao.wang@utsouthwestern.edu"),
               person(given = "Chongzhi",
                      family = "Zang",
                      role = "aut"))
as necessary.
Maintainer: ‘Luciane Ferreira Alcoforado <lucianea@id.uff.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luciane", "Ferreira"),
                    family = "Alcoforado",
                    role = c("aut", "cre"),
                    email = "lucianea@id.uff.br")
as necessary.
Found the following HTML validation problems:
plot.mandelbrot.html:67:1 (plot.mandelbrot.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Veronica Vinciotti <veronica.vinciotti@brunel.ac.uk>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘manet.Rd’:
    \keyword{actor-event,}
    \keyword{models,}
  File ‘mixtbern.Rd’:
    \keyword{actor-event,}
    \keyword{models,}
checkRd: (-1) manet.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) manet.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mixtbern.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Luke Jostins <luke.jostins@kennedy.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Jostins",
                    role = c("aut", "cre"),
                    email = "luke.jostins@kennedy.ox.ac.uk")
as necessary.
checkRd: (-1) MangroveTree.Rd:37: Lost braces
    37 |       An object of class \\code{\link[Mangrove]{MangrovePed}}
       |                                ^
Maintainer: ‘Chris Grace <cgrace@well.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Grace",
                    role = c("aut", "cre"),
                    email = "cgrace@well.ox.ac.uk")
as necessary.
Found the following HTML validation problems:
ManifestoDocumentMeta.html:50:1 (ManifestoDocumentMeta.Rd:13): Warning: missing </ul> before </div>
categories.html:59:1 (categories.Rd:28): Warning: missing </ul> before </div>
codes.html:69:1 (codes.Rd:29): Warning: missing </ul> before </div>
formatids.html:48:1 (formatids.Rd:10): Warning: missing </ul> before </div>
formatmpds.html:47:1 (formatmpds.Rd:10): Warning: missing </ul> before </div>
formatpartiesds.html:47:1 (formatpartiesds.Rd:10): Warning: missing </ul> before </div>
get_mpdb.html:66:1 (get_mpdb.Rd:21): Warning: missing </ul> before </div>
mp_cite.html:59:1 (mp_cite.Rd:19): Warning: missing </ul> before </div>
mp_use_corpus_version.html:58:1 (mp_use_corpus_version.Rd:14): Warning: missing </ul> before </div>
mpdb_api_request.html:57:1 (mpdb_api_request.Rd:16): Warning: missing </ul> before </div>
na_action.html:50:1 (na_action.Rd:12): Warning: missing </ul> before </div>
prefix.html:51:1 (prefix.Rd:12): Warning: missing </ul> before </div>
rescale.html:62:1 (rescale.Rd:18): Warning: missing </ul> before </div>
rile.html:49:1 (rile.Rd:13): Warning: missing </ul> before </div>
split_belgium.html:80:1 (split_belgium.Rd:31): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Trace.html:46:1 (Trace.Rd:10): Warning: missing </ul> before </div>
orthonorm.html:46:1 (orthonorm.Rd:10): Warning: missing </ul> before </div>
print.ManifoldOptim.html:51:1 (print.ManifoldOptim.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/manifold.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) manipulateWidget.Rd:113-117: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manipulateWidget.Rd:118-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manipulateWidget.Rd:121-123: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manipulateWidget.Rd:124-127: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
combineWidgets-shiny.html:68:1 (combineWidgets-shiny.Rd:25): Warning: missing </ul> before </div>
knit_print.MWController.html:50:1 (knit_print.MWController.Rd:12): Warning: missing </ul> before </div>
summary.MWController.html:51:1 (summary.MWController.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Shiqi Tu <tushiqi@picb.ac.cn>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sarah Friedrich <sarah.friedrich@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@math.uni-augsburg.de"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"))
as necessary.
checkRd: (-1) EEGwide.Rd:30-33: Lost braces
    30 |   if(requireNamespace("ggplot2")){ 
       |                                  ^
Found the following HTML validation problems:
plot.RM.html:56:1 (plot.RM.Rd:14): Warning: missing </ul> before </div>
print.MANOVA.html:51:1 (print.MANOVA.Rd:12): Warning: missing </ul> before </div>
print.RM.html:51:1 (print.RM.Rd:12): Warning: missing </ul> before </div>
summary.MANOVA.html:52:1 (summary.MANOVA.Rd:12): Warning: missing </ul> before </div>
summary.RM.html:53:1 (summary.RM.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
example_data.html:62:1 (example_data.Rd:17): Warning: missing </ul> before </div>
example_prescription_numbers.html:68:1 (example_prescription_numbers.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
call_sources.html:57:1 (call_sources.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
glossary.html:55:1 (glossary.Rd:20): Warning: missing </ul> before </div>
interface.html:77:1 (interface.Rd:46): Warning: missing </ul> before </div>
model_cluster.html:128:1 (model_cluster.Rd:72): Warning: missing </ul> before </div>
model_kselect.html:124:1 (model_kselect.Rd:63): Warning: missing </ul> before </div>
tutorials.html:62:1 (tutorials.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Christiana Kartsonaki <christiana.kartsonaki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christiana",
                    family = "Kartsonaki",
                    role = c("aut", "cre"),
                    email = "christiana.kartsonaki@gmail.com")
as necessary.
Maintainer: ‘Dani Irawan <irawan_dani@yahoo.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
check_upload_status.html:54:1 (check_upload_status.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Stefan Kuethe <crazycapivara@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.mapbox.com/mapbox-gl-js/api/map/#map#fitbounds
    From: man/fit_bounds.Rd
    Message: Invalid URL: '#' not allowed in fragment
Found the following HTML validation problems:
add_filter_control.html:68:1 (add_filter_control.Rd:22): Warning: missing </ul> before </div>
add_source.html:54:1 (add_source.Rd:14): Warning: missing </ul> before </div>
add_text_control.html:59:1 (add_text_control.Rd:17): Warning: missing </ul> before </div>
add_tooltips.html:55:1 (add_tooltips.Rd:15): Warning: missing </ul> before </div>
as_mapbox_source.html:71:1 (as_mapbox_source.Rd:29): Warning: missing </ul> before </div>
basemap_background_style.html:50:1 (basemap_background_style.Rd:12): Warning: missing </ul> before </div>
basemap_raster_style.html:51:1 (basemap_raster_style.Rd:13): Warning: missing </ul> before </div>
fit_bounds.html:55:1 (fit_bounds.Rd:15): Warning: missing </ul> before </div>
mapbox_source.html:52:1 (mapbox_source.Rd:14): Warning: missing </ul> before </div>
set_filter.html:54:1 (set_filter.Rd:14): Warning: missing </ul> before </div>
set_style.html:50:1 (set_style.Rd:12): Warning: missing </ul> before </div>
set_view_state.html:66:1 (set_view_state.Rd:20): Warning: missing </ul> before </div>
stamen_raster_tiles.html:46:1 (stamen_raster_tiles.Rd:10): Warning: missing </ul> before </div>
update_mapboxer.html:50:1 (update_mapboxer.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
theme_mapcan.html:55:1 (theme_mapcan.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Alex Deckmyn <alex.deckmyn@meteo.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "S", "code", "by", "Richard", "A."),
                      family = "Becker",
                      role = "aut"),
               person(given = c("Allan", "R.", "Wilks.", "R", "version", "by", "Ray"),
                      family = "Brownrigg.",
                      role = "aut",
                      email = "Ray.Brownrigg@ecs.vuw.ac.nz"),
               person(given = "Alex",
                      family = "Deckmyn",
                      role = "cre",
                      email = "alex.deckmyn@meteo.be"))
as necessary.
Specified C++14: please drop specification unless essential
Found the following HTML validation problems:
merge_add.html:57:1 (merge_add.Rd:16): Warning: missing </ul> before </div>
merge_delete.html:62:1 (merge_delete.Rd:21): Warning: missing </ul> before </div>
merge_edit.html:62:1 (merge_edit.Rd:21): Warning: missing </ul> before </div>
playback.html:46:1 (playback.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
on_section.html:56:1 (on_section.Rd:14): Warning: missing </ul> before </div>
story_leaflet.html:92:1 (story_leaflet.Rd:42): Warning: missing </ul> before </div>
story_map.html:100:1 (story_map.Rd:48): Warning: missing </ul> before </div>
story_maplibre.html:92:1 (story_maplibre.Rd:42): Warning: missing </ul> before </div>
story_section.html:78:1 (story_section.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mapi.html:317:1 (mapi.Rd:174): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_available_years.html:55:1 (check_available_years.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
detect_info_par.html:46:1 (detect_info_par.Rd:10): Warning: missing </ul> before </div>
draw_phases.html:57:1 (draw_phases.Rd:17): Warning: missing </ul> before </div>
filter_missing_ind.html:54:1 (filter_missing_ind.Rd:14): Warning: missing </ul> before </div>
filter_missing_mrk.html:54:1 (filter_missing_mrk.Rd:14): Warning: missing </ul> before </div>
plot.mappoly.homoprob.html:86:1 (plot.mappoly.homoprob.Rd:37): Warning: missing </ul> before </div>
plot.mappoly.prefpair.profiles.html:87:1 (plot.mappoly.prefpair.profiles.Rd:36): Warning: missing </ul> before </div>
plot_mappoly.map2.html:46:1 (plot_mappoly.map2.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.mapsapi_map.html:51:1 (plot.mapsapi_map.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Matt Taddy <mataddy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Taddy",
                    role = c("aut", "cre"),
                    email = "mataddy@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
knit_print.mapview.html:51:1 (knit_print.mapview.Rd:12): Warning: missing </ul> before </div>
mapviewOutput.html:51:1 (mapviewOutput.Rd:13): Warning: missing </ul> before </div>
print-mapview-method.html:47:1 (print-mapview-method.Rd:10): Warning: missing </ul> before </div>
renderMapview.html:55:1 (renderMapview.Rd:15): Warning: missing </ul> before </div>
show-mapview-method.html:47:1 (show-mapview-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.maq.html:51:1 (print.maq.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Andrey Paramonov <paramon@acdlabs.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrey",
                    family = "Paramonov",
                    role = c("aut", "cre"),
                    email = "paramon@acdlabs.ru")
as necessary.
Maintainer: ‘Eliezer Gurarie <egurarie@umd.edu>’

Found the following (possibly) invalid file URI:
  URI: Eurodeer.org
    From: man/Michela.Rd
checkRd: (-1) locate_shift.Rd:29: Lost braces
    29 | \code{\link{quickfit}}, code{\link{locator}}
       |                             ^
checkRd: (-1) marcher-package.Rd:14: Lost braces; missing escapes or markup?
    14 | 1. \code{\link{estimate_shift}} {Estimate a range shift process.}
       |                                 ^
checkRd: (-1) marcher-package.Rd:16: Lost braces; missing escapes or markup?
    16 | 2. \code{\link{simulate_shift}} {Simulate a range shift process.}
       |                                 ^
checkRd: (-1) marcher-package.Rd:18: Lost braces; missing escapes or markup?
    18 | 3. \code{\link{plot.shiftfit}} {Visualize a range shift process.}
       |                                ^
checkRd: (-1) marcher-package.Rd:20: Lost braces; missing escapes or markup?
    20 | 4. \code{\link{test_rangeshift}} {Test whether a range shift occurred.}
       |                                  ^
checkRd: (-1) marcher-package.Rd:22: Lost braces; missing escapes or markup?
    22 | 5. \code{\link{test_return}} {Test whether a migration was a return migration.}
       |                              ^
checkRd: (-1) marcher-package.Rd:24: Lost braces; missing escapes or markup?
    24 | 6. \code{\link{test_stopover}} {Test whether a stopover occurred during a migration.}
       |                                ^
checkRd: (-1) quickfit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) quickfit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
getLikelihood.html:55:1 (getLikelihood.Rd:17): Warning: missing </ul> before </div>
getTau.html:73:1 (getTau.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Andre Berchtold <andre.berchtold@unil.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ogier",
                      family = "Maitre",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Emery",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Oliver"),
                      family = "Buschor",
                      role = "aut"),
               person(given = "Andre",
                      family = "Berchtold",
                      role = c("aut", "cre"),
                      email = "andre.berchtold@unil.ch"))
as necessary.
Found the following HTML validation problems:
march.write.html:57:1 (march.write.Rd:16): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘data_analysis_descriptive.R’ ‘functions.R’ ‘main.R’
    ‘merge_quality_articles.R’
Found the following HTML validation problems:
get_model_matrix.html:101:1 (get_model_matrix.Rd:34): Warning: missing </ul> before </div>
checkRd: (-1) mma.Rd:67: Escaped LaTeX specials: \&
Found the following HTML validation problems:
mma_check.html:46:1 (mma_check.Rd:10): Warning: missing </ul> before </div>
mma_dir_effects.html:46:1 (mma_dir_effects.Rd:10): Warning: missing </ul> before </div>
mma_formulas.html:46:1 (mma_formulas.Rd:10): Warning: missing </ul> before </div>
mma_ind_effects.html:46:1 (mma_ind_effects.Rd:10): Warning: missing </ul> before </div>
mma_std_dir_effects.html:46:1 (mma_std_dir_effects.Rd:10): Warning: missing </ul> before </div>
mma_std_ind_effects.html:46:1 (mma_std_ind_effects.Rd:10): Warning: missing </ul> before </div>
perc_med.html:51:1 (perc_med.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Henrik Spliid <hspl@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Henrik",
                    family = "Spliid",
                    role = c("aut", "cre"),
                    email = "hspl@dtu.dk")
as necessary.
checkRd: (-1) marima.Rd:28: Lost braces; missing escapes or markup?
    28 | ( if(is.ts(DATA)) { DATA <- as.matrix(data.frame(DATA)) } and a message
       |                   ^
checkRd: (-1) marima.Rd:223: Escaped LaTeX specials: \&
Found the following HTML validation problems:
print.marima.html:70:1 (print.marima.Rd:23): Warning: missing </ul> before </div>
checkRd: (-1) markdownInput.Rd:17: Lost braces
    17 | \item{inputId}{The code{input} slot that will be used to access the value.}
       |                        ^
checkRd: (-1) markdownInput.Rd:35: Lost braces in \enumerate; \value handles \item{}{} directly
checkRd: (-1) markdownInput.Rd:36: Lost braces in \enumerate; \value handles \item{}{} directly
checkRd: (-1) markdownInput.Rd:81-82: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) markdownInput.Rd:84-86: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) markdownInput.Rd:89-90: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) moduleMarkdownInput.Rd:64-65: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) moduleMarkdownInput.Rd:67-69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) moduleMarkdownInput.Rd:72-73: Lost braces in \enumerate; meant \describe ?
Found the following HTML validation problems:
mark.html:72:1 (mark.Rd:31): Warning: missing </ul> before </div>
renderMarkdown.html:75:1 (renderMarkdown.Rd:31): Warning: missing </ul> before </div>
Maintainer: ‘Jeff Laake <jefflaake@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Laake",
                      role = c("aut", "cre"),
                      email = "jefflaake@gmail.com"),
               person(given = "Devin",
                      family = "Johnson",
                      role = "aut",
                      email = "devin.johnson@noaa.gov"),
               person(given = "Paul",
                      family = "Conn",
                      role = "aut",
                      email = "paul.conn@noaa.gov"),
               person(given = c("example", "for", "simHMM", "from", "Jay"),
                      family = "Rotella",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
setup_admb.html:65:1 (setup_admb.Rd:18): Warning: missing </ul> before </div>
setup_tmb.html:55:1 (setup_tmb.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "Jiebiao",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jing",
                      family = "Lei",
                      role = "aut"),
               person(given = "Kathryn",
                      family = "Roeder",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:57:1 (inst/NEWS.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
market_simulation.html:241:1 (market_simulation.Rd:140): Warning: <h4> anchor "+E2+80+98simulate_data+E2+80+99" already defined
market_simulation.html:247:1 (market_simulation.Rd:142): Warning: <h4> anchor "+E2+80+98simulate_model+E2+80+99" already defined
model_description.html:85:1 (model_description.Rd:38): Warning: <h4> anchor "+E2+80+98name+E2+80+99" already defined
model_description.html:91:1 (model_description.Rd:40): Warning: <h4> anchor "+E2+80+98describe+E2+80+99" already defined
model_description.html:97:1 (model_description.Rd:42): Warning: <h4> anchor "+E2+80+98market_type+E2+80+99" already defined
model_likelihoods.html:153:1 (model_likelihoods.Rd:84): Warning: <h4> anchor "+E2+80+98log_likelihood+E2+80+99" already defined
model_likelihoods.html:159:1 (model_likelihoods.Rd:87): Warning: <h4> anchor "+E2+80+98gradient+E2+80+99" already defined
model_likelihoods.html:165:1 (model_likelihoods.Rd:89): Warning: <h4> anchor "+E2+80+98hessian+E2+80+99" already defined
model_likelihoods.html:171:1 (model_likelihoods.Rd:91): Warning: <h4> anchor "+E2+80+98scores+E2+80+99" already defined
Maintainer: ‘Mans Magnusson <mons.magnusson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mans",
                      family = "Magnusson",
                      role = c("aut", "cre"),
                      email = "mons.magnusson@gmail.com"),
               person(given = "Oscar",
                      family = "Pettersson",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
assignment_config.html:46:1 (assignment_config.Rd:10): Warning: missing </ul> before </div>
assignment_paths_and_files.html:46:1 (assignment_paths_and_files.Rd:10): Warning: missing </ul> before </div>
check_installed_packages.html:47:1 (check_installed_packages.Rd:10): Warning: missing </ul> before </div>
construct_assignment_description.html:46:1 (construct_assignment_description.Rd:10): Warning: missing </ul> before </div>
create_github_download_url.html:46:1 (create_github_download_url.Rd:10): Warning: missing </ul> before </div>
directories.html:56:1 (directories.Rd:22): Warning: missing </ul> before </div>
expect_attached_package.html:50:1 (expect_attached_package.Rd:12): Warning: missing </ul> before </div>
expect_function_arguments.html:68:1 (expect_function_arguments.Rd:24): Warning: missing </ul> before </div>
expect_function_code.html:68:1 (expect_function_code.Rd:24): Warning: missing </ul> before </div>
expect_function_self_contained.html:54:1 (expect_function_self_contained.Rd:14): Warning: missing </ul> before </div>
expect_no_attached_forbidden_package.html:46:1 (expect_no_attached_forbidden_package.Rd:10): Warning: missing </ul> before </div>
expect_no_forbidden_function_code.html:50:1 (expect_no_forbidden_function_code.Rd:12): Warning: missing </ul> before </div>
get_assignment_full_subpath.html:51:1 (get_assignment_full_subpath.Rd:12): Warning: missing </ul> before </div>
get_file.html:63:1 (get_file.Rd:23): Warning: missing </ul> before </div>
mark_my_dir.html:74:1 (mark_my_dir.Rd:28): Warning: missing </ul> before </div>
translate_tasks_name_to_task_files.html:46:1 (translate_tasks_name_to_task_files.Rd:10): Warning: missing </ul> before </div>
write_assignment_yml.html:50:1 (write_assignment_yml.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Utkarsh", "J."),
                      family = "Dang",
                      role = c("aut", "cre"),
                      email = "utkarshdang@cunet.carleton.ca"),
               person(given = c("G.", "Brian"),
                      family = "Golding",
                      role = "aut"))
as necessary.
'library' or 'require' calls not declared from:
  ‘MCMCpack’ ‘matlab’ ‘microbenchmark’
Found the following HTML validation problems:
hommc-show.html:48:1 (hommc-show.Rd:10): Warning: missing </ul> before </div>
names.html:47:1 (names.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Balazs Dobi <dobibalazs@inf.elte.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Balazs", "Dobi", "&", "Andras"),
                      family = "Zempleni",
                      role = "aut"),
               person(given = "Balazs",
                      family = "Dobi",
                      role = "cre",
                      email = "dobibalazs@inf.elte.hu"))
as necessary.
checkRd: (-1) Markovchart.Rd:154: Lost braces
   154 | If either \code{h} or \code{k} have length greater than 1, then the \code{G-value} (weighted average of average cost and cost standard deviation) is calculated for all given values without optimisation. The value of the function in this case is a data frame of class code{Markov_grid} with \code{length(h)*length(k)} number of rows and three columns for \code{h}, \code{k} and the \code{G-value}.
       |                                                                                                                                                                                                                                                                                ^
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

The Description field contains
  <arxiv:1312.0557>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
fact_reverse.html:46:1 (fact_reverse.Rd:10): Warning: missing </ul> before </div>
make_sf.html:46:1 (make_sf.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Viviane Philipps <viviane.philipps@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Viviane",
                      family = "Philipps",
                      role = c("aut", "cre"),
                      email = "viviane.philipps@u-bordeaux.fr"),
               person(given = "Cecile",
                      family = "Proust-Lima",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Prague",
                      role = "aut"),
               person(given = "Boris",
                      family = "Hejblum",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Commenges",
                      role = "aut"),
               person(given = "Amadou",
                      family = "Diakite",
                      role = "aut"))
as necessary.
checkRd: (-1) marqLevAlg-package.Rd:14: Lost braces; missing escapes or markup?
    14 | (GH^{-1}G).
       |     ^
Maintainer: ‘S. M. Barbosa <susana.barbosa@fc.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susana",
                      family = "Barbosa",
                      role = "aut"),
               person(given = c("S.", "M."),
                      family = "Barbosa",
                      role = "cre",
                      email = "susana.barbosa@fc.up.pt"))
as necessary.
Found the following HTML validation problems:
MARSSfit.html:54:1 (MARSSfit.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Kelly McConville <kmcconville@fas.harvard.edu>’

The Description field contains
  (2017) <arXiv:1712.05708>.  The variance estimators which approximate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
compute_alt_loglik_from_matrix_and_pi.html:60:1 (compute_alt_loglik_from_matrix_and_pi.Rd:18): Warning: missing </ul> before </div>
compute_loglik_from_matrix_and_pi.html:58:1 (compute_loglik_from_matrix_and_pi.Rd:16): Warning: missing </ul> before </div>
compute_null_loglik_from_matrix.html:55:1 (compute_null_loglik_from_matrix.Rd:15): Warning: missing </ul> before </div>
compute_vloglik_from_matrix_and_pi.html:58:1 (compute_vloglik_from_matrix_and_pi.Rd:16): Warning: missing </ul> before </div>
make_names.html:53:1 (make_names.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) focalCompare.Rd:14: Lost braces
    14 | \item{fun}{The function fun should take multiple numbers, and return a single number. For example mean, modal, min or max. It should also accept a na.rm argument (or ignore it, e.g. as one of the 'dots' arguments. For example, length will fail, but function(x, ...){na.omit(length(x))} works. (Specifications from `raster::focal`)}
       |                                                                                                                                                                                                                                                                          ^
Found the following HTML validation problems:
airDensity.html:94:1 (airDensity.Rd:50): Warning: <h3> anchor "unitsENV" already defined
calibCert.html:188:1 (calibCert.Rd:110): Warning: <h3> anchor "unitsENV" already defined
massStandard.html:157:1 (massStandard.Rd:84): Warning: <h3> anchor "unitsENV" already defined
massStandardKit.html:185:1 (massStandardKit.Rd:111): Warning: <h3> anchor "unitsENV" already defined
uncertAirDensity.html:101:1 (uncertAirDensity.Rd:52): Warning: <h3> anchor "unitsENV" already defined
Maintainer: ‘Bill Venables <bill.venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
checkRd: (-1) hr_levels.Rd:9-12: Lost braces
     9 | kernelBiweight <- function(x, mean = 0, sd = 1) {
       |                                                 ^
checkRd: (-1) hr_levels.Rd:33-36: Lost braces
    33 | kernelCosine <- function(x, mean = 0, sd = 1) {
       |                                               ^
checkRd: (-1) hr_levels.Rd:41-44: Lost braces
    41 | kernelEpanechnikov <- function(x, mean = 0, sd = 1) {
       |                                                     ^
checkRd: (-1) hr_levels.Rd:58-61: Lost braces
    58 | kernelOptCosine <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:65-68: Lost braces
    65 | kernelRectangular <- function(x, mean = 0, sd = 1) {
       |                                                    ^
checkRd: (-1) hr_levels.Rd:72-75: Lost braces
    72 | kernelSquaredCosine <- function(x, mean = 0, sd = 1) {
       |                                                      ^
checkRd: (-1) hr_levels.Rd:79-82: Lost braces
    79 | kernelTriangular <- function(x, mean = 0, sd = 1) {
       |                                                   ^
checkRd: (-1) hr_levels.Rd:86-89: Lost braces
    86 | kernelTricube <- function(x, mean = 0, sd = 1) {
       |                                                ^
checkRd: (-1) hr_levels.Rd:93-96: Lost braces
    93 | kernelTriweight <- function(x, mean = 0, sd = 1) {
       |                                                  ^
checkRd: (-1) hr_levels.Rd:100-103: Lost braces
   100 | kernelUniform <- function(x, mean = 0, sd = 1) {
       |                                                ^
Maintainer: ‘Erik-Jan van Kesteren <e.vankesteren1@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erik-Jan",
                    family = "van Kesteren",
                    role = c("aut", "cre"),
                    email = "e.vankesteren1@uu.nl")
as necessary.
Maintainer: ‘Nicolas E. Campione <ncampion@une.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nicolas", "E."),
                    family = "Campione",
                    role = c("aut", "cre"),
                    email = "ncampion@une.edu.au")
as necessary.
checkRd: (-1) CF2004.Rd:8: Lost braces; missing escapes or markup?
     8 |   \item{X2}{an optional second variable with same length as \code{X}, should the equation be multiple (see Details) {in mm}}
       |                                                                                                                     ^
Maintainer: ‘James S. Clark <jimclark@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("James", "S."),
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "jimclark@duke.edu")
as necessary.
Maintainer: ‘David Degras <david.degras@umb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Degras",
                    role = c("aut", "cre"),
                    email = "david.degras@umb.edu")
as necessary.
checkRd: (-1) Rand.index.Rd:22: Lost braces; missing escapes or markup?
    22 | The two vectors \code{x} and \code{y} must have equal length. Given a set \eqn{S} and two partitions \eqn{X} and \eqn{Y} of \eqn{S}, the Rand index is the proportion of pairs of elements in \eqn{S} (out of all pairs) that are either concordant in both \eqn{X} and \eqn{Y} (i.e., they belong to the same member of \eqn{X} and to the same member of \eqn{Y}) or discordant (i.e., not concordant) in both \eqn{X} and {Y}.  
       |                                                                                                                                                                                                                                                                                                                                                                                                                              ^
checkRd: (-1) predict.matchFeat.Rd:21: Lost braces
    21 | The function \code{predict.matchFeat} finds the best matching for new feature vectors relative to an existing set of cluster/class centers. If code{object} results from a call to \code{\link{match.gaussmix}}, the same function is used for prediction (with fixed mean vectors and covariance matrices). In other cases, the function \code{\link{match.template}} is used for prediction. 
       |                                                                                                                                                    ^
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
checkRd: (-1) Match.Rd:90: Lost braces; missing escapes or markup?
    90 | expression in braces. For example, the condition "{[ab]*}" is equivalent
       |                                                   ^
Found the following HTML validation problems:
dot-onAttach.html:51:1 (dot-onAttach.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘P. Roebuck <proebuck1701@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "P.",
                    family = "Roebuck",
                    role = c("aut", "cre"),
                    email = "proebuck1701@gmail.com")
as necessary.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("aut", "cre"),
                      email = "normmatloff@gmail.com"),
               person(given = "Jack",
                      family = "Norman",
                      role = "aut"))
as necessary.
Maintainer: ‘Seung W. Choi <schoi@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seung", "W."),
                      family = "Choi",
                      role = c("aut", "cre"),
                      email = "schoi@austin.utexas.edu"),
               person(given = c("David", "R."),
                      family = "King",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
MAT.html:233:1 (MAT.Rd:98): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Andrea Brancaccio <andrea.brancaccio@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrea",
                      family = "Brancaccio",
                      role = c("aut", "ctb", "cph", "cre"),
                      email = "andrea.brancaccio@unipd.it"),
               person(given = c("Ottavia", "M."),
                      family = "Epifania",
                      role = c("aut", "ctb", "com")),
               person(given = "Debora",
                      family = "de Chiusole",
                      role = "ctb"))
as necessary.
Maintainer: ‘S. Thomas Kelly <tomkellygenetics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederick",
                      family = "Novomestky",
                      role = "aut",
                      email = "fnovomes@poly.edu"),
               person(given = c("S.", "Thomas"),
                      family = "Kelly",
                      role = "cre",
                      email = "tomkellygenetics@gmail.com"))
as necessary.
Maintainer: ‘Matthew Cserhati <csmatyi@protonmail.com>’

The Description field contains
  References: Mullner. <ArXiv:1109.2378>; Cserhati, Carter. (2020,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrey A Shabalin <andrey.shabalin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Matrix_eQTL_main.Rd:31: Lost braces; missing escapes or markup?
    31 |     {genepos} in the call of \code{Matrix_eQTL_main} function.
       |     ^
checkRd: (-1) Matrix_eQTL_main.Rd:35: Lost braces; missing escapes or markup?
    35 |     the data frames \code{snpspos} and {genepos}.
       |                                        ^
Maintainer: ‘Michael P.B. Gallaugher <michael_gallaugher@baylor.edu>’

The Description field contains
  <arXiv:2005.03861>. One key advantage of this model is the ability to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘column_group_by_drop_default.Rd’ ‘context.Rd’ ‘filter_column.Rd’
    ‘filter_row.Rd’ ‘join.Rd’ ‘row_group_by_drop_default.Rd’
Found the following HTML validation problems:
meta.html:89:1 (meta.Rd:44): Warning: missing </ul> before </div>
Found the following HTML validation problems:
X2Fun.html:56:1 (X2Fun.Rd:14): Warning: missing </ul> before </div>
deltaSub.html:56:1 (deltaSub.Rd:14): Warning: missing </ul> before </div>
multiSub.html:56:1 (multiSub.Rd:14): Warning: missing </ul> before </div>
print.mst.html:51:1 (print.mst.Rd:12): Warning: missing </ul> before </div>
sigmaRhoFun.html:62:1 (sigmaRhoFun.Rd:18): Warning: missing </ul> before </div>
sigmaZFun.html:62:1 (sigmaZFun.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Michael P.B. Gallaugher <gallaump@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "P.B."),
                      family = "Gallaugher",
                      role = c("aut", "cre"),
                      email = "gallaump@mcmaster.ca"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘utilities.R’
Maintainer: ‘Tom Prior <tomjamesprior@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Prior",
                    role = c("aut", "cre"),
                    email = "tomjamesprior@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘maxcombo-package.Rd’:
    https://doi.org/10.1177/0962280220931560
Found the following HTML validation problems:
predict.node1.html:55:1 (predict.node1.Rd:14): Warning: missing </ul> before </div>
print.add_numeric.html:51:1 (print.add_numeric.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘"Alexander Jueterbock" <Alexander-Jueterbock@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Jueterbock",
                      role = "aut"),
               person(given = "\"Alexander",
                      family = "Jueterbock\"",
                      role = "cre",
                      email = "Alexander-Jueterbock@web.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) MaxentVariableSelection-package.Rd:46: Lost braces; missing escapes or markup?
    46 | \tab Tyberghein L, Verbruggen H, Pauly K, Troupin C, Mineur F and {De Clerck}, O (2012)\cr
       |                                                                   ^
Maintainer: ‘Zhenyu Wang <zw425@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhenyu", "Wang;", "Zijian"),
                      family = "Guo",
                      role = "aut"),
               person(given = "Zhenyu",
                      family = "Wang",
                      role = "cre",
                      email = "zw425@stat.rutgers.edu"))
as necessary.

The Description field contains
  shift maximin effect, which was proposed in <arXiv:2011.07568>. It
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ott Toomet <otoomet@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  activePar.Rd: nObs
  nObs.Rd: nParam
  nParam.Rd: nObs
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bowen Deng <baolidakai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bowen",
                    family = "Deng",
                    role = c("aut", "cre"),
                    email = "baolidakai@gmail.com")
as necessary.
Found the following HTML validation problems:
return_mc.html:90:1 (return_mc.Rd:38): Warning: missing </ul> before </div>
return_mmc.html:154:1 (return_mmc.Rd:86): Warning: missing </ul> before </div>
Maintainer: ‘Steven Phillips <mrmaxent@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steven",
                    family = "Phillips",
                    role = c("aut", "cre"),
                    email = "mrmaxent@gmail.com")
as necessary.
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shan",
                      family = "Ba",
                      role = c("aut", "cre"),
                      email = "shanbatr@gmail.com"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Maintainer: ‘Cinzia Franceschini <cinziafranceschini@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cinzia",
                      family = "Franceschini",
                      role = c("aut", "cre"),
                      email = "cinziafranceschini@msn.com"),
               person(given = "Nicola",
                      family = "Loperfido",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
initializeLogging.html:55:1 (initializeLogging.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
NEWS.html:67:74 (NEWS.Rd:28): Warning: missing </p> before <a>
NEWS.html:67:5 (NEWS.Rd:28): Warning: missing </a> before <a>
NEWS.html:67:195 (NEWS.Rd:28): Warning: inserting implicit <p>
NEWS.html:67:199 (NEWS.Rd:28): Warning: discarding unexpected </a>
NEWS.html:68:82 (NEWS.Rd:28): Warning: missing </p> before <a>
NEWS.html:68:5 (NEWS.Rd:28): Warning: missing </a> before <a>
NEWS.html:68:211 (NEWS.Rd:28): Warning: inserting implicit <p>
NEWS.html:68:215 (NEWS.Rd:28): Warning: discarding unexpected </a>
NEWS.html:67:74 (NEWS.Rd:28): Warning: trimming empty <p>
NEWS.html:67:195 (NEWS.Rd:28): Warning: trimming empty <p>
NEWS.html:68:82 (NEWS.Rd:28): Warning: trimming empty <p>
NEWS.html:68:211 (NEWS.Rd:28): Warning: trimming empty <p>
Maintainer: ‘Meilin Jiang <meilin.jiang@ufl.edu>’

The Description field contains
  <arXiv:2301.10064> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:40:1 (inst/NEWS.Rd:16): Warning: <h4> anchor "Changed" already defined
NEWS.html:69:1 (inst/NEWS.Rd:30): Warning: <h4> anchor "Changed" already defined
NEWS.html:84:1 (inst/NEWS.Rd:38): Warning: <h4> anchor "Changed" already defined
NEWS.html:108:1 (inst/NEWS.Rd:49): Warning: <h4> anchor "Fixed" already defined
Found the following HTML validation problems:
MbgModelRunner.html:693:1 (MbgModelRunner.Rd:512): Warning: missing </ul> before </div>
MbgModelRunner.html:442:1 (MbgModelRunner.Rd:360): Warning: <h5> anchor "Usage" already defined
MbgModelRunner.html:458:1 (MbgModelRunner.Rd:370): Warning: <h5> anchor "Usage" already defined
MbgModelRunner.html:474:1 (MbgModelRunner.Rd:380): Warning: <h5> anchor "Usage" already defined
MbgModelRunner.html:480:1 (MbgModelRunner.Rd:384): Warning: <h5> anchor "Arguments" already defined
MbgModelRunner.html:508:1 (MbgModelRunner.Rd:402): Warning: <h5> anchor "Usage" already defined
MbgModelRunner.html:514:1 (MbgModelRunner.Rd:406): Warning: <h5> anchor "Arguments" already defined
MbgModelRunner.html:547:1 (MbgModelRunner.Rd:425): Warning: <h5> anchor "Usage" already defined
MbgModelRunner.html:553:1 (MbgModelRunner.Rd:429): Warning: <h5> anchor "Arguments" already defined
MbgModelRunner.html:579:1 (MbgModelRunner.Rd:445): Warning: <h5> anchor "Usage" already defined
MbgModelRunner.html:589:1 (MbgModelRunner.Rd:453): Warning: <h5> anchor "Arguments" already defined
MbgModelRunner.html:636:1 (MbgModelRunner.Rd:482): Warning: <h5> anchor "Returns" already defined
MbgModelRunner.html:670:1 (MbgModelRunner.Rd:501): Warning: <h5> anchor "Usage" already defined
MbgModelRunner.html:676:1 (MbgModelRunner.Rd:505): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Scott Foster <scott.foster@data61.csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Scott", "D."),
                      family = "Foster",
                      role = "aut"),
               person(given = "Scott",
                      family = "Foster",
                      role = "cre",
                      email = "scott.foster@data61.csiro.au"))
as necessary.
checkRd: (-1) findDescendingTrans.Rd:29: Lost braces
    29 |    Foster, S.D., Hosack, G.R., J. Monk, Lawrence, E., Barrett, N.S., Williams, A. and Przeslawski, P. (2020) Spatially-Balanced Designs for Transect-Based Surveys. Methods in Ecology and Evolution. emph{11}: 95--105
       |                                                                                                                                                                                                           ^
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukasz",
                    family = "Komsta",
                    role = c("aut", "cre"),
                    email = "lukasz.komsta@umlub.pl")
as necessary.
Found the following HTML validation problems:
DR.comparisons.html:61:1 (DR.comparisons.Rd:19): Warning: missing </ul> before </div>
check.network.html:51:1 (check.network.Rd:13): Warning: missing </ul> before </div>
drop.comp.html:61:1 (drop.comp.Rd:18): Warning: missing </ul> before </div>
gen.parameters.to.save.html:55:1 (gen.parameters.to.save.Rd:15): Warning: missing </ul> before </div>
print.mbnma.network.html:51:1 (print.mbnma.network.Rd:12): Warning: missing </ul> before </div>
print.mbnma.predict.html:51:1 (print.mbnma.predict.Rd:12): Warning: missing </ul> before </div>
print.mbnma.rank.html:51:1 (print.mbnma.rank.Rd:12): Warning: missing </ul> before </div>
print.nma.nodesplit.html:51:1 (print.nma.nodesplit.Rd:12): Warning: missing </ul> before </div>
print.nodesplit.html:51:1 (print.nodesplit.Rd:12): Warning: missing </ul> before </div>
print.relative.array.html:57:1 (print.relative.array.Rd:15): Warning: missing </ul> before </div>
rank.html:50:1 (rank.Rd:12): Warning: missing </ul> before </div>
summary.mbnma.html:56:1 (summary.mbnma.Rd:15): Warning: missing </ul> before </div>
summary.mbnma.network.html:51:1 (summary.mbnma.network.Rd:12): Warning: missing </ul> before </div>
summary.nma.nodesplit.html:51:1 (summary.nma.nodesplit.Rd:12): Warning: missing </ul> before </div>
summary.nodesplit.html:51:1 (summary.nodesplit.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.mb.predict.html:51:1 (print.mb.predict.Rd:12): Warning: missing </ul> before </div>
write.cor.html:57:1 (write.cor.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Jae Keun Yoo <peter.yoo@ewha.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "Keun"),
                    family = "Yoo",
                    role = c("aut", "cre"),
                    email = "peter.yoo@ewha.ac.kr")
as necessary.
checkRd: (-1) SIGMAS.Rd:17: Lost braces; missing escapes or markup?
    17 | Sigmahat =  (Y^{T} Y)/n;
       |                ^
checkRd: (-1) SIGMAS.Rd:18: Lost braces; missing escapes or markup?
    18 | Sigmahat_fit = (Y^{T}  P_fx  Y)/n;
       |                   ^
checkRd: (-1) matpower.Rd:17: Lost braces; missing escapes or markup?
    17 | The function computes M^{power} for a symmetric matrix M. }
       |                         ^
Maintainer: ‘Euloge C. Kenne Pagui <kenne@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Euloge", "Clovis", "Kenne"),
                      family = "Pagui",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Sartori",
                      role = "aut"),
               person(given = "Alessandra",
                      family = "Salvan",
                      role = "aut"),
               person(given = c("Euloge", "C.", "Kenne"),
                      family = "Pagui",
                      role = "cre",
                      email = "kenne@stat.unipd.it"))
as necessary.

The Description field contains
  <https://arxiv.org/abs/1604.04768>) to median bias reduction. This
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hung Nguyen <ntthung@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hung",
                    family = "Nguyen",
                    role = c("aut", "cre"),
                    email = "ntthung@gmail.com")
as necessary.
Maintainer: ‘Benoit Liquet <benoit.liquet@qut.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benoit",
                      family = "Liquet",
                      role = c("aut", "cre"),
                      email = "benoit.liquet@qut.edu.au"),
               person(given = "Matthew",
                      family = "Sutton",
                      role = "aut"))
as necessary.
Maintainer: ‘Ning Ning <patricianing@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jinwen",
                      family = "Qiu",
                      role = "aut",
                      email = "qjwsnow_ctw@hotmail.com"),
               person(given = "Ning",
                      family = "Ning",
                      role = c("aut", "cre"),
                      email = "patricianing@gmail.com"))
as necessary.
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee15239@gmail.com"),
               person(given = c("Mahlet", "G."),
                      family = "Tadesse",
                      role = "aut"),
               person(given = c("Brent", "A."),
                      family = "Coull",
                      role = "aut"),
               person(given = c("Jacqueline", "R."),
                      family = "Starr",
                      role = "aut"))
as necessary.
Maintainer: ‘Rosaria Lombardo <rosaria.lombardo@unicampania.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rosaria",
                      family = "Lombardo",
                      role = c("aut", "cre"),
                      email = "rosaria.lombardo@unicampania.it"),
               person(given = c("Eric", "J"),
                      family = "Beh",
                      role = "aut"))
as necessary.
checkRd: (-1) satisfaction.Rd:28: Lost braces
    28 | Della Valle E (2010) Della Valle E 2010 Analisi Multidimensionale dei Dati: la Qualit\'{a} del Lavoro nelle Cooperative Sociali. 
       |                                                                                        ^
checkRd: (-1) satisfaction.Rd:29: Lost braces
    29 | Unpublished thesis, Seconda Universit\'{a}  degli Studi di Napoli, Capua Italy.
       |                                        ^
Maintainer: ‘Laszlo Baranyai <Baranyai.Laszlo@etk.szie.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Laszlo",
                    family = "Baranyai",
                    role = c("aut", "cre"),
                    email = "lbaranyai@atb-potsdam.de")
as necessary.
Maintainer: ‘Holger Schwender <holger.schw@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Schwender",
                    role = c("aut", "cre"),
                    email = "holger.schw@gmx.de")
as necessary.
Maintainer: ‘Heming Deng<dheming@ruc.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Yichen",
                      family = "Qin",
                      role = "aut"),
               person(given = "Heming",
                      family = "Deng",
                      role = c("aut", "cre"),
                      email = "dheming@ruc.edu.cn"))
as necessary.
Maintainer: ‘Ming Gao <gaoming@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "gaoming@umich.edu"),
               person(given = "Jialiang",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Arno Fritsch <arno.fritsch@tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arno",
                    family = "Fritsch",
                    role = c("aut", "cre"),
                    email = "arno.fritsch@tu-dortmund.de")
as necessary.
Maintainer: ‘Chris M Manuel <cmmanuel@stat.tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chris", "M"),
                      family = "Manuel",
                      role = c("aut", "cre"),
                      email = "cmmanuel@stat.tamu.edu"),
               person(given = "Samiran",
                      family = "Sinha",
                      role = "aut"),
               person(given = "Suojin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Hitoshi Iuchi <hiuchi@sfc.keio.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hitoshi",
                    family = "Iuchi",
                    role = c("aut", "cre"),
                    email = "hiuchi@sfc.keio.ac.jp")
as necessary.
Maintainer: ‘David Palma <d.palma@leeds.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patrick",
                      family = "Meyer",
                      role = "aut"),
               person(given = "Sébastien",
                      family = "Bigaret",
                      role = "aut"),
               person(given = "Richard",
                      family = "Hodgett",
                      role = "aut"),
               person(given = "Alexandru-Liviu",
                      family = "Olteanu",
                      role = "aut"),
               person(given = "David",
                      family = "Palma",
                      role = c("aut", "cre"),
                      email = "d.palma@leeds.ac.uk"),
               person(given = c("Aritad", "Alan"),
                      family = "Choicharoon",
                      role = "aut"))
as necessary.
Maintainer: ‘Felipe Acosta Archila <acosta.felipe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felipe", "Acosta"),
                    family = "Archila",
                    role = c("aut", "cre"),
                    email = "acosta.felipe@gmail.com")
as necessary.
Maintainer: ‘Ben Sherwood <ben.sherwood@ku.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ben",
                      family = "Sherwood",
                      role = c("aut", "cre"),
                      email = "ben.sherwood@ku.edu"),
               person(given = "Brad",
                      family = "Price",
                      role = "aut"))
as necessary.

The Description field contains
  Sherwood (2018) <arXiv:1707.03530>. The MCEN model simultaneously
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mehmet", "Hakan"),
                    family = "Satman",
                    role = c("aut", "cre"),
                    email = "mhsatman@istanbul.edu.tr")
as necessary.
Maintainer: ‘Gregory R. Warnes <greg@warnes.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gregory", "R."),
                      family = "Warnes",
                      role = c("aut", "cre"),
                      email = "greg@warnes.net"),
               person(given = "Robert",
                      family = "Burrows",
                      role = "aut"))
as necessary.
checkRd: (-1) mc.lnOR.Rd:7: Escaped LaTeX specials: \&
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) MCbound.precalc1.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCbound.precalc1.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MCtest.Rd:39: Escaped LaTeX specials: \#
checkRd: (-1) MCtest.Rd:40: Escaped LaTeX specials: \#
Maintainer: ‘Zehua Zhou <zehuazho@buffalo.edu>’

The Description field contains
  Bisson and Jiwei Zhao (2021) <arXiv:2108.11589>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Wieland <thomas.wieland.geo@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.geo@googlemail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Martin Elff <mclogit@elff.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Elff",
                    role = c("aut", "cre"),
                    email = "mclogit@elff.eu")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:311:1 (inst/NEWS.Rd:159): Warning: missing </ul> before </div>
NEWS.html:76:1 (inst/NEWS.Rd:34): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:107:1 (inst/NEWS.Rd:51): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:126:1 (inst/NEWS.Rd:60): Warning: <h4> anchor "IMPROVEMENTS" already defined
NEWS.html:146:1 (inst/NEWS.Rd:71): Warning: <h4> anchor "IMPROVEMENTS" already defined
NEWS.html:184:1 (inst/NEWS.Rd:100): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:198:1 (inst/NEWS.Rd:108): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:221:1 (inst/NEWS.Rd:120): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:237:1 (inst/NEWS.Rd:128): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:253:1 (inst/NEWS.Rd:137): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:270:1 (inst/NEWS.Rd:144): Warning: <h4> anchor "BUGFIXES" already defined
Maintainer: ‘Ronja Foraita <foraita@bips.uni-bremen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Martin", "L."),
                      family = "Jäger",
                      role = "aut"),
               person(given = "Ronja",
                      family = "Foraita",
                      role = "cre",
                      email = "foraita@bips.uni-bremen.de"))
as necessary.
Found the following HTML validation problems:
VaR.html:53:1 (VaR.Rd:15): Warning: missing </ul> before </div>
mclustAddons-internal.html:64:1 (mclustAddons-internal.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Jarrod Hadfield <j.hadfield@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jarrod",
                    family = "Hadfield",
                    role = c("aut", "cre"),
                    email = "j.hadfield@ed.ac.uk")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  method_plot.Rd: hdi
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mikhail V. Matz <matz@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikhail", "V."),
                    family = "Matz",
                    role = c("aut", "cre"),
                    email = "matz@utexas.edu")
as necessary.
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "geyer@umn.edu"),
               person(given = c("Leif", "T."),
                      family = "Johnson",
                      role = "aut",
                      email = "ltjohnson@google.com"))
as necessary.
Found the following HTML validation problems:
params.html:144:1 (params.Rd:61): Warning: missing </ul> before </div>
Maintainer: ‘Mark Puttick <mark.puttick@bristol.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Puttick",
                      role = c("aut", "cre"),
                      email = "mark.puttick@bristol.ac.uk"),
               person(given = "Pascal",
                      family = "Title",
                      role = "ctb"))
as necessary.
Maintainer: ‘Hannah Comiskey <hannah.comiskey.2015@mumail.ie>’

The Description field contains
  <arXiv:2212.03844>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘left_join_codebook.Rd’ ‘setup_dir.R’
Maintainer: ‘Zhengyang Zhou <zhengyang.zhou@unthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhengyang",
                    family = "Zhou",
                    role = c("aut", "cre"),
                    email = "zhengyang.zhou@unthsc.edu")
as necessary.
Found the following HTML validation problems:
Shannon.html:46:1 (Shannon.Rd:13): Warning: missing </ul> before </div>
Simpson.html:46:1 (Simpson.Rd:12): Warning: missing </ul> before </div>
estSimpson.html:46:1 (estSimpson.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Russell S. Pierce <russell.s.pierce@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Russell", "S."),
                    family = "Pierce",
                    role = c("aut", "cre"),
                    email = "russell.s.pierce@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘summary.mcpmod_simulation.R’
Maintainer: ‘Bjoern Bornkamp <bornkamp@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bjoern",
                      family = "Bornkamp",
                      role = c("aut", "cre"),
                      email = "bornkamp@statistik.tu-dortmund.de"),
               person(given = "Jose",
                      family = "Pinheiro",
                      role = "aut"),
               person(given = "Frank",
                      family = "Bretz",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
bernoulli.html:46:1 (bernoulli.Rd:10): Warning: missing </ul> before </div>
exponential.html:46:1 (exponential.Rd:10): Warning: missing </ul> before </div>
get_jags_data.html:79:1 (get_jags_data.Rd:27): Warning: missing </ul> before </div>
is.mcpfit.html:46:1 (is.mcpfit.Rd:10): Warning: missing </ul> before </div>
mcmclist_samples.html:60:1 (mcmclist_samples.Rd:17): Warning: missing </ul> before </div>
mcpfamily.html:46:1 (mcpfamily.Rd:10): Warning: missing </ul> before </div>
negbinomial.html:47:1 (negbinomial.Rd:10): Warning: missing </ul> before </div>
recover_levels.html:59:1 (recover_levels.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Gerhard <00gerhard@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
MCResultResampling.printSummary.html:46:1 (MCResultResampling.printSummary.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ahmed N. Albatineh <aalbatineh@hsc.edu.kw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ahmed", "N."),
                      family = "Albatineh",
                      role = c("aut", "cre"),
                      email = "aalbatineh@hsc.edu.kw"),
               person(given = c("Meredith", "L."),
                      family = "Wilcox",
                      role = "aut"),
               person(given = "Bashar",
                      family = "Zogheib",
                      role = "aut"),
               person(given = "Magdalena",
                      family = "Niewiadomska-Bugaj",
                      role = "aut"))
as necessary.
Maintainer: ‘Leopoldo Catania <leopoldo.catania@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Leopoldo", "Catania", "&", "Mauro"),
                      family = "Bernardi",
                      role = "aut"),
               person(given = "Leopoldo",
                      family = "Catania",
                      role = "cre",
                      email = "leopoldo.catania@gmail.com"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘LossVol.Rd’:
    http://dx.doi.org/10.1002/jae.800
Found the following HTML validation problems:
SSM-methods.html:47:1 (SSM-methods.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Imdad Ullah Muhammad <mimdadasad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘imcdiag.Rd’:
    https://doi.org/10.17576/jsm-2019-4809-26
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:127:1 (inst/NEWS.Rd:55): Warning: missing </ul> before </div>
checkRd: (-1) eigp.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) imcdiag.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) mc.plot.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) mctest.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:39: Escaped LaTeX specials: \&
checkRd: (-1) omcdiag.Rd:41: Escaped LaTeX specials: \&
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

The Description field contains
  described in Gandy and Scott (2020) <arXiv:2001.06465>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial version.
checkRd: (-1) mcvis.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mcvis.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mcvis.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
power_studies_results.html:47:1 (power_studies_results.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mdb_example.html:48:1 (mdb_example.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Found the following significant warnings:
  splinesinter_short.cpp:68:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MDEI.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following HTML validation problems:
custom_na_recode.html:75:1 (custom_na_recode.Rd:33): Warning: missing </ul> before </div>
recode_helper.html:78:1 (recode_helper.Rd:30): Warning: missing </ul> before </div>
recode_selectors.html:74:1 (recode_selectors.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Benjamin Christoffersen <boennecd@gmail.com>’

The Description field contains
  <arXiv:2102.02642>. The method is related to Hoff (2007)
  <doi:10.1214/07-AOAS107> and Zhao and Udell (2019) <arXiv:1910.12845>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get_mdgc.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:37: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Maengseok Noh <msnoh@pknu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Youngjo",
                      family = "Lee",
                      role = "aut"),
               person(given = "Marek",
                      family = "Molas",
                      role = "aut"),
               person(given = "Maengseok",
                      family = "Noh",
                      role = c("aut", "cre"),
                      email = "msnoh@pknu.ac.kr"))
as necessary.
Found the following HTML validation problems:
DHGLMMODELING.html:143:1 (DHGLMMODELING.Rd:93): Warning: missing </ul> before </div>
Maintainer: ‘Mun-Gwan Hong <mun-gwan.hong@scilifelab.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mun-Gwan",
                    family = "Hong",
                    role = c("aut", "cre"),
                    email = "mun-gwan.hong@scilifelab.se")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) normalizeWithMA.Rd:19: Lost braces
    19 |         \item{expGroup}{ a \code{vector} of experimental grouping variable such as plate. The length of code{expGroup} must be same as the number of rows of \code{mD}.}
       |                                                                                                             ^
Maintainer: ‘Sarah Friedrich <sarah.friedrich@alumni.uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Ditzhaus",
                      role = "aut"),
               person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@alumni.uni-ulm.de"))
as necessary.

The Description field contains
  Ditzhaus, M. and Friedrich, S. (2018) <arXiv:1807.05504>.  Ditzhaus, M.
  and Pauly, M. (2018) <arXiv:1808.05627>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘E. F. Haghish <haghish@uio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("E.", "F."),
                    family = "Haghish",
                    role = c("aut", "cre"),
                    email = "haghish@uio.no")
as necessary.
Maintainer: ‘Alka Benawra <alkabenawra@rogers.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alka",
                    family = "Benawra",
                    role = c("aut", "cre"),
                    email = "alkabenawra@rogers.com")
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dot-hat.html:46:1 (dot-hat.Rd:10): Warning: missing </ul> before </div>
dot-mdmr.permstats.html:66:1 (dot-mdmr.permstats.Rd:20): Warning: missing </ul> before </div>
dot-pseudo.r2.html:63:1 (dot-pseudo.r2.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
agriculture.html:66:1 (agriculture.Rd:21): Warning: missing </ul> before </div>
horticulturae.html:66:1 (horticulturae.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Guillaume Chapron <gchapron@carnivoreconservation.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Iadine",
                      family = "Chades",
                      role = "aut"),
               person(given = "Guillaume",
                      family = "Chapron",
                      role = c("aut", "cre"),
                      email = "gchapron@carnivoreconservation.org"),
               person(given = "Marie-Josee",
                      family = "Cros",
                      role = "aut"),
               person(given = "Frederick",
                      family = "Garcia",
                      role = "aut"),
               person(given = "Regis",
                      family = "Sabbadin",
                      role = "aut"))
as necessary.
checkRd: (-1) mdp_example_forest.Rd:36: Lost braces; missing escapes or markup?
    36 | Let {1, ... S} be the states of the forest. the Sth state being the oldest.
       |     ^
Maintainer: ‘Genzo Kaga <genzo.k-1321@ruri.waseda.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Genzo",
                    family = "Kaga",
                    role = c("aut", "cre"),
                    email = "genzo.k-1321@ruri.waseda.jp")
as necessary.
Maintainer: ‘Antonio Hermes M. da Silva-Junior <hermes@ccet.ufrn.br>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Found the following HTML validation problems:
Rnw2Rmd.html:54:1 (Rnw2Rmd.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Takumi Tsutaya <tsutayatakumi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takumi",
                    family = "Tsutaya",
                    role = c("aut", "cre"),
                    email = "tsutayatakumi@gmail.com",
                    comment = c(ORCID = "0000-0001-5104-5223"))
as necessary.
Found the following HTML validation problems:
plotDoc.html:61:1 (plotDoc.Rd:20): Warning: missing </ul> before </div>
resultDoc.html:40:1 (resultDoc.Rd:7): Warning: missing </ul> before </div>
summariseMeasurementDoc.html:84:1 (summariseMeasurementDoc.Rd:33): Warning: missing </ul> before </div>
tableDoc.html:74:1 (tableDoc.Rd:29): Warning: missing </ul> before </div>
timeScaleDoc.html:40:1 (timeScaleDoc.Rd:7): Warning: missing </ul> before </div>
uniqueCombinationsDoc.html:41:1 (uniqueCombinationsDoc.Rd:8): Warning: missing </ul> before </div>
Maintainer: ‘Mark Edmondson <r@sunholo.com>’

The BugReports field in DESCRIPTION has
  https://github.com/MarkEdmondson1234/measurementProtocol
which should likely be
  https://github.com/MarkEdmondson1234/measurementProtocol/issues
instead.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
Found the following HTML validation problems:
KAPPA.html:56:1 (KAPPA.Rd:17): Warning: missing </ul> before </div>
LSR.html:59:1 (LSR.Rd:19): Warning: missing </ul> before </div>
MultilabelACC.html:57:1 (MultilabelACC.Rd:17): Warning: missing </ul> before </div>
MultilabelF1.html:57:1 (MultilabelF1.Rd:17): Warning: missing </ul> before </div>
MultilabelPPV.html:57:1 (MultilabelPPV.Rd:17): Warning: missing </ul> before </div>
MultilabelTPR.html:57:1 (MultilabelTPR.Rd:17): Warning: missing </ul> before </div>
QSR.html:60:1 (QSR.Rd:19): Warning: missing </ul> before </div>
WKAPPA.html:56:1 (WKAPPA.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Fred Viole <fviole@fordham.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hrishikesh", "D."),
                      family = "Vinod",
                      role = "aut",
                      email = "Vinod@fordham.edu"),
               person(given = "Javier",
                      family = "López-de-Lacalle",
                      role = "aut",
                      email = "javlacalle@yahoo.es"),
               person(given = "Fred",
                      family = "Viole",
                      role = c("aut", "cre"),
                      email = "fviole@fordham.edu"))
as necessary.
Maintainer: ‘Linda Nab <lindanab4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Linda",
                    family = "Nab",
                    role = c("aut", "cre"),
                    email = "lindanab4@gmail.com")
as necessary.
Maintainer: ‘Sergio Venturini <sergio.venturini@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sergio",
                      family = "Venturini",
                      role = c("aut", "cre"),
                      email = "sergio.venturini@unicatt.it"),
               person(given = "Jessica",
                      family = "Myers",
                      role = "aut"))
as necessary.
checkRd: (-1) bhm.mcmc.Rd:37: Lost braces; missing escapes or markup?
    37 |   where \eqn{N_{ij}} denotes the number of times that the error profile \eqn{i} is cited on a report from hospital {j} and \eqn{y_{ij}} is the corresponding number of times that profile \eqn{i} in hospital \eqn{j} was reported with harm.
       |                                                                                                                    ^
checkRd: (-1) strings-internal.Rd:14: Lost braces
    14 | code{stringPlaceExact}: find location of string, using exact match
       |     ^
checkRd: (-1) strings-internal.Rd:17: Lost braces
    17 | code{stringPlaceFuzzy}: find location of string, using partial match
       |     ^
checkRd: (-1) strings-internal.Rd:19: Lost braces
    19 | code{stringPlace}: find location of string, generic
       |     ^
checkRd: (-1) strings-internal.Rd:21: Lost braces
    21 | code{checkFuzzy}: check for "close" string matches
       |     ^
Found the following HTML validation problems:
communication.html:141:1 (communication.Rd:91): Warning: missing </ul> before </div>
Maintainer: ‘Zizhuo Ren<zizhuoren@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zizhuo",
                      family = "Ren",
                      role = c("aut", "cre"),
                      email = "zizhuoren@gmail.com"),
               person(given = "Hesen",
                      family = "Peng",
                      role = "aut"),
               person(given = "Tianwei",
                      family = "Yu",
                      role = "aut"))
as necessary.
Maintainer: ‘Gautier Paux <gautier@paux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gautier",
                      family = "Paux",
                      role = c("aut", "cre"),
                      email = "gautier@paux.fr"),
               person(given = "Alex",
                      family = "Dmitrienko.",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CaseStudy02
    From: inst/doc/case-studies.html
Maintainer: ‘Chao Cheng <c.cheng@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chao", "Cheng;", "Donna", "Spiegelman;", "Fan"),
                      family = "Li",
                      role = "aut"),
               person(given = "Chao",
                      family = "Cheng",
                      role = "cre",
                      email = "c.cheng@yale.edu"))
as necessary.
Maintainer: ‘Xu Qin <xuqin@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@pitt.edu"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Gary Chan <kcgchan@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gary",
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "kcgchan@u.washington.edu")
as necessary.

The Description field contains
  effects by Chan, Imai, Yam and Zhang (2016) <arXiv:1601.03501>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) MED.Rd:25: Lost braces
    25 | The vector of treatment assignments of length \eqn{n}. Must be coded as \eqn{\{0,1} {{0,1}}.
       |                                                                                     ^
Maintainer: ‘Walter K Kremers <kremers.walter@mayo.edu>’

The Description field contains
  <arXiv:2106.14063> and is an extension of the works by Chen Y-H, Chen
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zac Davies <zaclavis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zac",
                    family = "Davies",
                    role = c("aut", "cre"),
                    email = "zaclavis@gmail.com")
as necessary.

Found the following (possibly) invalid URLs:
  URL: https:www.meetup.com/meetup_api/
    From: DESCRIPTION
    Message: Invalid URL: missing authority part
Maintainer: ‘Won-Min Song <wonmin1984@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Won-Min",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "wonmin1984@gmail.com"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘Data_Correlation.txt’ ‘correlation_FDR_table.txt’
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Found the following HTML validation problems:
coef.ensemble.html:53:1 (coef.ensemble.Rd:13): Warning: missing </ul> before </div>
findmodels.html:54:1 (findmodels.Rd:14): Warning: missing </ul> before </div>
lmboot.html:54:1 (lmboot.Rd:14): Warning: missing </ul> before </div>
new_ensemble.html:50:1 (new_ensemble.Rd:12): Warning: missing </ul> before </div>
summary.ensemble.html:53:1 (summary.ensemble.Rd:13): Warning: missing </ul> before </div>
summary.resid_ensemble.html:55:1 (summary.resid_ensemble.Rd:14): Warning: missing </ul> before </div>
summary.variable_ensemble.html:51:1 (summary.variable_ensemble.Rd:12): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  melt_delim.Rd: tibble
  melt_delim_chunked.Rd: tibble
  melt_fwf.Rd: tibble
  melt_table.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘meltr/libs/meltr.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
    ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Karsten Donnay <kdonnay@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karsten",
                      family = "Donnay",
                      role = c("aut", "cre"),
                      email = "kdonnay@gmx.net"),
               person(given = "Eric",
                      family = "Dunford",
                      role = "aut"))
as necessary.
Maintainer: ‘Bert Gunter <bgunter.4567@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bert",
                    family = "Gunter",
                    role = c("aut", "cre"),
                    email = "bgunter.4567@gmail.com")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:766:1 (inst/NEWS.Rd:431): Warning: missing </ul> before </div>
NEWS.html:567:1 (inst/NEWS.Rd:318): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:636:1 (inst/NEWS.Rd:366): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:669:1 (inst/NEWS.Rd:382): Warning: <h4> anchor "USER-VISIBLE-CHANGES" already defined
NEWS.html:685:1 (inst/NEWS.Rd:390): Warning: <h4> anchor "DEFUNCT" already defined
NEWS.html:703:1 (inst/NEWS.Rd:400): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:735:1 (inst/NEWS.Rd:418): Warning: <h4> anchor "USER-VISIBLE-CHANGES" already defined
NEWS.html:746:1 (inst/NEWS.Rd:423): Warning: <h4> anchor "DEFUNCT" already defined
Found the following HTML validation problems:
00memisc.html:357:1 (00memisc.Rd:224): Warning: missing </ul> before </div>
Write.html:59:1 (Write.Rd:19): Warning: missing </ul> before </div>
memisc-deprecated.html:85:1 (memisc-deprecated.Rd:36): Warning: missing </ul> before </div>
stats-conveniences.html:81:1 (stats-conveniences.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘Roy Wetherall <rwetherall@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roy",
                    family = "Wetherall",
                    role = c("aut", "cre"),
                    email = "rwetherall@gmail.com")
as necessary.
Found the following HTML validation problems:
cache_memory.html:47:1 (cache_memory.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Peter Meilstrup <peter.meilstrup@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Meilstrup",
                    role = c("aut", "cre"),
                    email = "peter.meilstrup@gmail.com")
as necessary.
File ‘memo/libs/memo.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘PRCODE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
memo.html:65:1 (memo.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Blas M. Benito <blasbenito@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Blas", "M."),
                    family = "Benito",
                    role = c("aut", "cre"),
                    email = "blasbenito@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘computeMemory.Rd’:
    https://doi.org/10.18637/jss.v077.i01
    https://doi.org/10.1023/A:1010933404324
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Steve Walker <steve.walker@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Douglas",
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut",
                      email = "maechler@R-project.org"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut",
                      email = "bbolker@gmail.com"),
               person(given = "Steve",
                      family = "Walker",
                      role = "cre",
                      email = "steve.walker@utoronto.ca"))
as necessary.
checkRd: (-1) Soybean.Rd:15: Escaped LaTeX specials: \#
checkRd: (-1) Soybean.Rd:33: Escaped LaTeX specials: \#
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print-hr.html:51:1 (print-hr.Rd:13): Warning: missing </ul> before </div>
print-sysinfo.html:51:1 (print-sysinfo.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
getter.html:120:1 (getter.Rd:83): Warning: missing </ul> before </div>
values.html:53:1 (values.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Martin Wiegand <Martin.Wiegand@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Wiegand",
                      role = c("aut", "cre"),
                      email = "martin.wiegand@manchester.ac.uk"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut"))
as necessary.
Maintainer: ‘Richard A. Bilonick <rabilonick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Richard", "A."),
                    family = "Bilonick",
                    role = c("aut", "cre"),
                    email = "rabilonick@gmail.com")
as necessary.
Found the following HTML validation problems:
fetch.merMod.msgs.html:46:1 (fetch.merMod.msgs.Rd:10): Warning: missing </ul> before </div>
plot_sim_error_chks.html:90:1 (plot_sim_error_chks.Rd:40): Warning: missing </ul> before </div>
Maintainer: ‘François Grolleau <francois.grolleau@aphp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "François",
                    family = "Grolleau",
                    role = c("aut", "cre"),
                    email = "francois.grolleau@aphp.fr")
as necessary.
Maintainer: ‘Jingyi Guo <jingyi.guo@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jingyi",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "jingyi.guo@ntnu.no"),
               person(given = "Andrea",
                      family = "Riebler",
                      role = "aut",
                      email = "andrea.riebler@ntnu.no"))
as necessary.
Maintainer: ‘Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jack",
                      family = "Bowden",
                      role = "aut",
                      email = "j.bowden@bristol.ac.uk",
                      comment = "conception"),
               person(given = "Christopher",
                      family = "Jackson",
                      role = c("aut", "cre"),
                      email = "chris.jackson@mrc-bsu.cam.ac.uk",
                      comment = "programming"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘MetaAnalyser.Rd’:
    http://dx.doi.org/10.1080/00031305.2016.1165735
Found the following HTML validation problems:
params.html:92:1 (params.Rd:41): Warning: missing </ul> before </div>
Maintainer: ‘Xin Yang <xyang.krystal@gmail.com>’

The Description field contains
  Luo et al. (2016) <arXiv:1505.05687>, sample standard deviation
  estimators by Wan et al. (2014) <arXiv:1407.8038>, and the best linear
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
plot.meta_pred.html:75:1 (plot.meta_pred.Rd:25): Warning: missing </ul> before </div>
predicted_bf.html:61:1 (predicted_bf.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Claire Gormley <claire.gormley@ucd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nyamundanda",
                      family = "Gift",
                      role = "aut"),
               person(given = c("Isobel", "Claire"),
                      family = "Gormley",
                      role = "aut"),
               person(given = "Lorraine",
                      family = "Brennan.",
                      role = "aut"),
               person(given = "Claire",
                      family = "Gormley",
                      role = "cre",
                      email = "claire.gormley@ucd.ie"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
detect_sensitivity.html:46:1 (detect_sensitivity.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Olajumoke Evangelina Owokotomo <olajumoke.owokotomo@uhasselt.be>’

The BugReports field in DESCRIPTION has
  https://github.com/OlajumokeEvangelina/MetabolicSurv/issues/new
which should likely be
  https://github.com/OlajumokeEvangelina/MetabolicSurv/issues/new/issues
instead.
checkRd: (-1) CVLasoelacox.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:70-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:74-76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:77-79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:82-85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CVLasoelacox.Rd:86-87: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Monica Calderon-Santiago <b42casam@uco.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monica",
                    family = "Calderon-Santiago",
                    role = c("aut", "cre"),
                    email = "b42casam@uco.es")
as necessary.
Found the following HTML validation problems:
Xvalid_all.html:83:1 (Xvalid_all.Rd:35): Warning: missing </ul> before </div>
dot-ComputeY.html:58:1 (dot-ComputeY.Rd:16): Warning: missing </ul> before </div>
dot-PredY.html:50:1 (dot-PredY.Rd:12): Warning: missing </ul> before </div>
dot-ReplaceNA.html:62:1 (dot-ReplaceNA.Rd:18): Warning: missing </ul> before </div>
dot-compute_re_Q_.html:70:1 (dot-compute_re_Q_.Rd:22): Warning: missing </ul> before </div>
dot-compute_tau_.html:66:1 (dot-compute_tau_.Rd:20): Warning: missing </ul> before </div>
dot-partition.html:66:1 (dot-partition.Rd:20): Warning: missing </ul> before </div>
prednode_cpp.html:50:1 (prednode_cpp.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
MetaCore_filter.html:46:1 (MetaCore_filter.Rd:10): Warning: missing </ul> before </div>
check_columns.html:78:1 (check_columns.Rd:30): Warning: missing </ul> before </div>
check_structure.html:62:1 (check_structure.Rd:18): Warning: missing </ul> before </div>
check_words.html:50:1 (check_words.Rd:12): Warning: missing </ul> before </div>
metacore.html:90:1 (metacore.Rd:40): Warning: missing </ul> before </div>
Found the following files/directories:
  ‘cycHumanBloodData.csv’ ‘cycHumanBloodDesign.csv’
  ‘cycMouseLiverProtein.txt’ ‘cycMouseLiverRNA.csv’ ‘cycSimu4h2d.csv’
  ‘cycYeastCycle.csv’ ‘example’
Maintainer: ‘Daniel Noble <daniel.wa.noble@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
feprof.html:53:1 (feprof.Rd:13): Warning: missing </ul> before </div>
fespoint.html:66:1 (fespoint.Rd:20): Warning: missing </ul> before </div>
plotheights.html:95:1 (plotheights.Rd:35): Warning: missing </ul> before </div>
Maintainer: ‘Ajay Arunachalam <ajay.arunachalam08@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ajay",
                    family = "Arunachalam",
                    role = c("aut", "cre"),
                    email = "ajay.arunachalam08@gmail.com")
as necessary.
Found the following HTML validation problems:
CVaR.html:50:1 (CVaR.Rd:12): Warning: missing </ul> before </div>
VaR.html:50:1 (VaR.Rd:12): Warning: missing </ul> before </div>
add_dens_polygon.html:80:1 (add_dens_polygon.Rd:32): Warning: missing </ul> before </div>
annotate.html:66:1 (annotate.Rd:20): Warning: missing </ul> before </div>
custom_bw.html:47:1 (custom_bw.Rd:10): Warning: missing </ul> before </div>
est_beta_params.html:50:1 (est_beta_params.Rd:12): Warning: missing </ul> before </div>
fastlm.html:50:1 (fastlm.Rd:12): Warning: missing </ul> before </div>
get_efficient_frontier.html:50:1 (get_efficient_frontier.Rd:12): Warning: missing </ul> before </div>
get_quantile_contour.html:50:1 (get_quantile_contour.Rd:12): Warning: missing </ul> before </div>
is_element.html:50:1 (is_element.Rd:12): Warning: missing </ul> before </div>
metasim_base.html:120:1 (metasim_base.Rd:57): Warning: missing </ul> before </div>
my.axis.html:60:1 (my.axis.Rd:18): Warning: missing </ul> before </div>
optim_thermal.html:54:1 (optim_thermal.Rd:14): Warning: missing </ul> before </div>
plot_panel_lines.html:59:1 (plot_panel_lines.Rd:17): Warning: missing </ul> before </div>
thermal_area.html:78:1 (thermal_area.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Lu Tang <lutang@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Tang",
                      role = c("aut", "cre"),
                      email = "lutang@umich.edu"),
               person(given = "Ling",
                      family = "Zhou",
                      role = "aut"),
               person(given = c("Peter", "X.K."),
                      family = "Song",
                      role = "aut"))
as necessary.
checkRd: (-1) datagenerator.Rd:17: Lost braces; missing escapes or markup?
    17 | Returns data frame with \code{n*K} rows (if \code{n} is a scalar), or \code{sum(n)} rows (if \code{n} is a \code{K}-element vector). The data frame contains columns "y", "x1", \dots, "x_{p-1}" and "group" if \code{family="gaussian"}, \code{"binomial"} or \code{"poisson"}; or contains columns "time", "status", "x1", \dots, "x_{p-1}" and "group" if \code{family="cox"}.
       |                                                                                                                                                                                           ^
checkRd: (-1) datagenerator.Rd:17: Lost braces; missing escapes or markup?
    17 | Returns data frame with \code{n*K} rows (if \code{n} is a scalar), or \code{sum(n)} rows (if \code{n} is a \code{K}-element vector). The data frame contains columns "y", "x1", \dots, "x_{p-1}" and "group" if \code{family="gaussian"}, \code{"binomial"} or \code{"poisson"}; or contains columns "time", "status", "x1", \dots, "x_{p-1}" and "group" if \code{family="cox"}.
       |                                                                                                                                                                                                                                                                                                                                        ^
Maintainer: ‘Marc J. Lajeunesse <lajeunesse@usf.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
MakeQQplot.html:58:1 (MakeQQplot.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Ville Satopää <ville.satopaa@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  (2020) <arXiv:2010.09971>.  A meta-analysis framework along with two
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) asympVar_LinReg.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LinReg.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) asympVar_LogReg.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_gamma_EB.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_gamma_EB.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_gamma_EB.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
download_EML_data.html:66:1 (download_EML_data.Rd:20): Warning: missing </ul> before </div>
download_ISO_data.html:66:1 (download_ISO_data.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Frederico Mestre <mestre.frederico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederico",
                      family = "Mestre",
                      role = c("aut", "cre"),
                      email = "mestre.frederico@gmail.com"),
               person(given = "Fernando",
                      family = "Canovas",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Risk",
                      role = "aut"),
               person(given = "Ricardo",
                      family = "Pita",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Mira",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Beja.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) rland.graph.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rland.graph.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘metalite_table1_to_rtf.R’
Found the following HTML validation problems:
aggregate_data.html:65:1 (aggregate_data.Rd:18): Warning: missing </ul> before </div>
calc_anova.html:52:1 (calc_anova.Rd:12): Warning: missing </ul> before </div>
data_imputation.html:58:1 (data_imputation.Rd:15): Warning: missing </ul> before </div>
get_data_range.html:47:1 (get_data_range.Rd:10): Warning: missing </ul> before </div>
open_file.html:47:1 (open_file.Rd:10): Warning: missing </ul> before </div>
read_named_region.html:50:1 (read_named_region.Rd:12): Warning: missing </ul> before </div>
read_quant_status.html:74:1 (read_quant_status.Rd:27): Warning: missing </ul> before </div>
set_threshold.html:50:1 (set_threshold.Rd:12): Warning: missing </ul> before </div>
slice_conc_values.html:55:1 (slice_conc_values.Rd:14): Warning: missing </ul> before </div>
slice_meta_data.html:50:1 (slice_meta_data.Rd:12): Warning: missing </ul> before </div>
slice_metabolites.html:51:1 (slice_metabolites.Rd:12): Warning: missing </ul> before </div>
transform.html:51:1 (transform.Rd:12): Warning: missing </ul> before </div>
unify_hex.html:47:1 (unify_hex.Rd:10): Warning: missing </ul> before </div>
zero_imputation.html:55:1 (zero_imputation.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Samuel Blanck <samuel.blanck@univ-lille.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillemette",
                      family = "Marot",
                      role = c("aut", "cre")),
               person(given = "Samuel",
                      family = "Blanck",
                      role = "cre",
                      email = "samuel.blanck@univ-lille.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
set_params.html:93:1 (set_params.Rd:54): Warning: missing </ul> before </div>
stop_conditions.html:56:1 (stop_conditions.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ns.html:46:1 (ns.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Jason Griffin <jasongriffin138@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sora Yoon <ysora90@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sora",
                    family = "Yoon",
                    role = c("aut", "cre"),
                    email = "ysora90@gmail.com")
as necessary.
Found the following HTML validation problems:
F_i.html:54:1 (F_i.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘metaRangePriorityQueue.Rd’ ‘metaRangeProcess.Rd’
Found the following HTML validation problems:
print.meta.html:444:1 (print.meta.Rd:270): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forest.metarep.Rd: forest.meta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
ROCcoords.html:50:1 (ROCcoords.Rd:12): Warning: missing </ul> before </div>
metaSDT.loglik.html:74:1 (metaSDT.loglik.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Nanami Taketomi <nnmamikrn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nanami",
                      family = "Taketomi",
                      role = c("aut", "cre"),
                      email = "nnmamikrn@gmail.com"),
               person(given = "Takeshi",
                      family = "Emura",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
income.html:56:1 (income.Rd:17): Warning: <h4> anchor "+E2+80+98income+E2+80+99" already defined
print.sim_mats_list.html:51:1 (print.sim_mats_list.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ilja M. Nolte <i.m.nolte@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ilja", "M."),
                    family = "Nolte",
                    role = c("aut", "cre"),
                    email = "i.m.nolte@umcg.nl")
as necessary.
Maintainer: ‘Ingmar Visser <i.visser@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hilde", "M.", "Huizenga", "&", "Ingmar"),
                      family = "Visser",
                      role = "aut"),
               person(given = "Ingmar",
                      family = "Visser",
                      role = "cre",
                      email = "i.visser@uva.nl"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
metaumbrella-package.html:621:1 (metaumbrella-package.Rd:231): Warning: missing </ul> before </div>
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = "Rui",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.
Maintainer: ‘Min Lu <m.lu6@umiami.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Min",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "m.lu6@umiami.edu")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/luminwin/metavcov/issues/new
which should likely be
  https://github.com/luminwin/metavcov/issues/new/issues
instead.
Maintainer: ‘Blake Robert Mills <blakerobertmills@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Blake", "Robert"),
                    family = "Mills",
                    role = c("aut", "cre"),
                    email = "blakerobertmills@gmail.com")
as necessary.
Found the following HTML validation problems:
scale_fill_met_c.html:63:1 (scale_fill_met_c.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Laura Mack <laum52@zedat.fu-berlin.de>’

The Description field contains
  <arXiv:2208.11438>].
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
'library' or 'require' call not declared from: ‘xts’
Maintainer: ‘Florian Lecocq <florian.lecocq@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1506.06707>.  Chamroukhi F. (2015)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/meteorits.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Cory Merow <cory.merow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andy",
                      family = "Rominger",
                      role = "aut"),
               person(given = "Cory",
                      family = "Merow",
                      role = c("aut", "cre"),
                      email = "cory.merow@gmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ebar.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘ipd.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘meteESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘meteSSF.Rd’:
    \keyword{METE,}
    \keyword{multiplier,}
  File ‘predictESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘print.meteESF.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘sad.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
  File ‘spd.Rd’:
    \keyword{METE,}
    \keyword{MaxEnt,}
    \keyword{multiplier,}
Found the following HTML validation problems:
print.html:59:1 (print.Rd:16): Warning: missing </ul> before </div>
subset.html:68:1 (subset.Rd:23): Warning: missing </ul> before </div>
summary.Meth.html:53:1 (summary.Meth.Rd:14): Warning: missing </ul> before </div>
summary.html:55:1 (summary.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Mark Chaffin <mac8278@mail.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Chaffin",
                    role = c("aut", "cre"),
                    email = "mac8278@mail.harvard.edu")
as necessary.
Found the following files/directories:
  ‘MetProc_output.pdf’ ‘sample_removed.csv’ ‘sample_retained.csv’
Found the following HTML validation problems:
app_set_up.html:48:1 (app_set_up.Rd:11): Warning: missing </ul> before </div>
default_creds_path.html:47:1 (default_creds_path.Rd:11): Warning: missing </ul> before </div>
encrypt_creds_path.html:46:1 (encrypt_creds_path.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
params_binary.html:48:1 (params_binary.Rd:12): Warning: missing </ul> before </div>
params_classification.html:46:1 (params_classification.Rd:10): Warning: missing </ul> before </div>
params_regression.html:46:1 (params_regression.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
metropolis.control.html:79:1 (metropolis.control.Rd:33): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Trajectory.html:63:1 (Trajectory.Rd:19): Warning: missing </ul> before </div>
cut.eof.html:55:1 (cut.eof.Rd:14): Warning: missing </ul> before </div>
denormalise.html:53:1 (denormalise.Rd:15): Warning: missing </ul> before </div>
label_placers.html:118:1 (label_placers.Rd:84): Warning: missing </ul> before </div>
label_scales.html:218:1 (label_scales.Rd:118): Warning: missing </ul> before </div>
scale_stroke.colour_continuous.html:40:1 (scale_stroke.colour_continuous.Rd:7): Warning: missing </ul> before </div>
Found the following HTML validation problems:
predict.phreg.html:102:1 (predict.phreg.Rd:63): Warning: missing </ul> before </div>
predictRisk.binreg.html:63:1 (predictRisk.binreg.Rd:22): Warning: missing </ul> before </div>
rchazC.html:54:1 (rchazC.Rd:14): Warning: missing </ul> before </div>
rpch.html:54:1 (rpch.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Lambda2cov.html:60:1 (Lambda2cov.Rd:16): Warning: missing </ul> before </div>
dot-exp_info_algebraic.html:58:1 (dot-exp_info_algebraic.Rd:16): Warning: missing </ul> before </div>
dot-score_algebraic.html:62:1 (dot-score_algebraic.Rd:18): Warning: missing </ul> before </div>
egp-function.html:77:1 (egp-function.Rd:31): Warning: missing </ul> before </div>
gev.infomat.html:58:1 (gev.infomat.Rd:16): Warning: missing </ul> before </div>
gev.score.html:50:1 (gev.score.Rd:12): Warning: missing </ul> before </div>
gp.fit.html:78:1 (gp.fit.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Adam L. Pintar <adam.pintar@nist.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Adam", "L."),
                      family = "Pintar",
                      role = c("aut", "cre"),
                      email = "adam.pintar@nist.gov"),
               person(given = c("Zachary", "H."),
                      family = "Levine",
                      role = "aut"))
as necessary.
Maintainer: ‘Hadrien Charvat  <h.charvat.ef@juntendo.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hadrien",
                      family = "Charvat",
                      role = c("aut", "cre"),
                      email = "h.charvat.ef@juntendo.ac.jp"),
               person(given = "Aurelien",
                      family = "Belot",
                      role = "aut"),
               person(given = "Juste",
                      family = "Goungounga",
                      role = "aut"))
as necessary.
Maintainer: ‘Cai Li <cai.li.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cai",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "cai.li.stats@gmail.com"),
               person(given = "Luo",
                      family = "Xiao",
                      role = "aut"))
as necessary.
'library' or 'require' call not declared from: ‘tibble’
Maintainer: ‘Onno Kleen <r@onnokleen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
plot_weighting_scheme.html:46:1 (plot_weighting_scheme.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mehmet Balcilar <mehmet@mbalcilar.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mehmet",
                    family = "Balcilar",
                    role = c("aut", "cre"),
                    email = "mehmet@mbalcilar.net")
as necessary.
Found the following HTML validation problems:
calculate_steps.html:54:1 (calculate_steps.Rd:14): Warning: missing </ul> before </div>
calculate_vars.html:58:1 (calculate_vars.Rd:16): Warning: missing </ul> before </div>
get_5min.html:54:1 (get_5min.Rd:14): Warning: missing </ul> before </div>
met_basal.html:54:1 (met_basal.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ensure_length.html:54:1 (ensure_length.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Michael Messer <messer@math.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Messer",
                      role = c("aut", "cre"),
                      email = "messer@math.uni-frankfurt.de"),
               person(given = "Stefan",
                      family = "Albert",
                      role = "aut"),
               person(given = "Solveig",
                      family = "Plomer",
                      role = "aut"),
               person(given = "Gaby",
                      family = "Schneider",
                      role = "aut"))
as necessary.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Maintainer: ‘William H. Asquith <wasquith@usgs.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("William", "H."),
                      family = "Asquith",
                      role = c("aut", "cre"),
                      email = "wasquith@usgs.gov"),
               person(given = c("John", "F."),
                      family = "England",
                      role = c("aut", "ctb")),
               person(given = c("George", "R."),
                      family = "Herrmann",
                      role = "ctb"))
as necessary.
Found the following HTML validation problems:
gen.sample.labels.html:52:1 (gen.sample.labels.Rd:14): Warning: missing </ul> before </div>
mgc.stat.driver.html:66:1 (mgc.stat.driver.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fix.family.cdf.html:48:1 (fix.family.cdf.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
batch_migration_stage.html:66:1 (batch_migration_stage.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
summary.mgee2.html:52:1 (summary.mgee2.Rd:13): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘read_mgi_biotype_conflict_rpt.R’
Found the following HTML validation problems:
common-args.html:59:1 (common-args.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Masatoshi Katabuchi <mattocci27@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Masatoshi",
                      family = "Katabuchi",
                      role = c("aut", "cre"),
                      email = "mattocci27@gmail.com"),
               person(given = "Akihiro",
                      family = "Nakamura",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juhyun Kim <juhkim111@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yiwen",
                      family = "Zhang",
                      role = "aut",
                      email = "zhangyiwen1015@gmail.com"),
               person(given = "Hua",
                      family = "Zhou",
                      role = "aut",
                      email = "huazhou@ucla.edu"),
               person(given = "Juhyun",
                      family = "Kim",
                      role = "cre",
                      email = "juhkim111@ucla.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Safiye Celik <safiye@cs.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Safiye",
                    family = "Celik",
                    role = c("aut", "cre"),
                    email = "safiye@cs.washington.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
logLik.mix.html:51:1 (logLik.mix.Rd:12): Warning: missing </ul> before </div>
logLik.mvn.html:51:1 (logLik.mvn.Rd:12): Warning: missing </ul> before </div>
mean.mix.html:51:1 (mean.mix.Rd:12): Warning: missing </ul> before </div>
mean.mvn.html:51:1 (mean.mvn.Rd:12): Warning: missing </ul> before </div>
mix-method.html:47:1 (mix-method.Rd:10): Warning: missing </ul> before </div>
mvn-method.html:47:1 (mvn-method.Rd:10): Warning: missing </ul> before </div>
print.mix.html:51:1 (print.mix.Rd:12): Warning: missing </ul> before </div>
print.mvn.html:51:1 (print.mvn.Rd:12): Warning: missing </ul> before </div>
vcov.mix.html:51:1 (vcov.mix.Rd:12): Warning: missing </ul> before </div>
vcov.mvn.html:51:1 (vcov.mvn.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Nathan Carr <nathan.carr@maxar.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nathan",
                    family = "Carr",
                    role = c("aut", "cre"),
                    email = "nathan.carr@maxar.com")
as necessary.
Found the following HTML validation problems:
Interface.html:334:1 (Interface.Rd:219): Warning: missing </ul> before </div>
Interface.html:123:1 (Interface.Rd:64): Warning: <h5> anchor "Usage" already defined
Interface.html:135:1 (Interface.Rd:74): Warning: <h5> anchor "Arguments" already defined
Interface.html:180:1 (Interface.Rd:108): Warning: <h5> anchor "Usage" already defined
Interface.html:197:1 (Interface.Rd:123): Warning: <h5> anchor "Arguments" already defined
Interface.html:232:1 (Interface.Rd:152): Warning: <h5> anchor "Returns" already defined
Interface.html:252:1 (Interface.Rd:165): Warning: <h5> anchor "Usage" already defined
Interface.html:267:1 (Interface.Rd:178): Warning: <h5> anchor "Arguments" already defined
Interface.html:294:1 (Interface.Rd:199): Warning: <h5> anchor "Returns" already defined
Interface.html:311:1 (Interface.Rd:208): Warning: <h5> anchor "Usage" already defined
Interface.html:317:1 (Interface.Rd:212): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Irina Gaynanova <irinagn@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irina",
                    family = "Gaynanova",
                    role = c("aut", "cre"),
                    email = "irinagn@umich.edu")
as necessary.
Maintainer: ‘Martin Siebenborn <martin.siebenborn@uni-hamburg.de>’

The BugReports field in DESCRIPTION has
  https://github.com/SplineSmoothing/MGSS
which should likely be
  https://github.com/SplineSmoothing/MGSS/issues
instead.
Specified C++14: please drop specification unless essential
Found the following HTML validation problems:
censor_worker.html:68:1 (censor_worker.Rd:22): Warning: missing </ul> before </div>
fast_replace.html:60:1 (fast_replace.Rd:17): Warning: missing </ul> before </div>
filter_overlap.html:49:1 (filter_overlap.Rd:12): Warning: missing </ul> before </div>
get_matches.html:59:1 (get_matches.Rd:16): Warning: missing </ul> before </div>
worker.html:59:1 (worker.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>’

The BugReports field in DESCRIPTION has
  https://github.com/richelbilderbeek/mhcnuggetsr
which should likely be
  https://github.com/richelbilderbeek/mhcnuggetsr/issues
instead.
Maintainer: ‘Kobi Perl <kobipe3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kobi",
                    family = "Perl",
                    role = c("aut", "cre"),
                    email = "kobipe3@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Mhorseshoe.Rmd’ using rmarkdown

Quitting from Mhorseshoe.Rmd:10-18 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'horseshoe'
---
Backtrace:
    ▆
 1. └─base::library(horseshoe)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Mhorseshoe.Rmd' failed with diagnostics:
there is no package called 'horseshoe'
--- failed re-building ‘Mhorseshoe.Rmd’

SUMMARY: processing the following file failed:
  ‘Mhorseshoe.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jared O'Connell <jaredoconnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jared",
                      family = "O'Connell",
                      role = c("aut", "cre"),
                      email = "jaredoconnell@gmail.com"),
               person(given = "Søren",
                      family = "Højsgaard",
                      role = "aut",
                      email = "sorenh@math.aau.dk"))
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
Maintainer: ‘Mohammed Sedki <Mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘MHTrajectoryR-package.Rd’:
    \keyword{Binary data, logistic regression, Metropo [TRUNCATED]
Error(s) in re-building vignettes:
  ...
--- re-building ‘mhurdle.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
! LaTeX Error: Environment talltblr undefined.

Error: processing vignette 'mhurdle.Rmd' failed with diagnostics:
LaTeX failed to compile /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mhurdle.Rcheck/vign_test/mhurdle/vignettes/mhurdle.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See mhurdle.log for more info.
--- failed re-building ‘mhurdle.Rmd’

SUMMARY: processing the following file failed:
  ‘mhurdle.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
mhurdle.methods.html:167:1 (mhurdle.methods.Rd:108): Warning: missing </ul> before </div>
Found the following HTML validation problems:
predict.MIAmaxent_iwlr.html:55:1 (predict.MIAmaxent_iwlr.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yannick Marcon <yannick.marcon@obiba.org>’

The BugReports field in DESCRIPTION has
  https://github.com/obiba/micar
which should likely be
  https://github.com/obiba/micar/issues
instead.
Found the following HTML validation problems:
rqlNode.html:50:1 (rqlNode.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ronja Foraita <foraita@leibniz-bips.de>’

The Description field contains
  RM, Foraita R, Didelez V, Witte J (2021) <arXiv:2108.13395>; Witte J,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  flexCItest.Rd: gaussCItest, disCItest
  getSuff.Rd: gaussCItest, disCItest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = "Geraldine",
                      family = "Henningsen",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/micEcon/micEconCES
which should likely be
  https://github.com/micEcon/micEconCES/issues
instead.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Sam Wilson <samwilson303@gmail.com>’

The Description field contains
  model by Stekhoven and Buhlmann <arXiv:1105.0828> to impute missing
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
getqbar.html:46:1 (getqbar.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘micer.R’
Maintainer: ‘Aurelie Bertrand <aurelie.bertrand@uclouvain.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aurelie",
                      family = "Bertrand",
                      role = c("aut", "cre"),
                      email = "aurelie.bertrand@uclouvain.be"),
               person(given = "Catherine",
                      family = "Legrand",
                      role = "aut"),
               person(given = "Ingrid",
                      family = "Van Keilegom",
                      role = "aut"))
as necessary.
Maintainer: ‘Seong Hyun Hwang <krshh1412@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seong", "Hyun", "Hwang", "with", "contributions", "from", "Rachel", "Myoung"),
                      family = "Moon",
                      role = "aut"),
               person(given = c("Seong", "Hyun"),
                      family = "Hwang",
                      role = "cre",
                      email = "krshh1412@gmail.com"))
as necessary.
Found the following HTML validation problems:
dot-checkfile.html:46:1 (dot-checkfile.Rd:10): Warning: missing </ul> before </div>
dot-getstar.html:46:1 (dot-getstar.Rd:10): Warning: missing </ul> before </div>
dot-lda.fun.html:46:1 (dot-lda.fun.Rd:10): Warning: missing </ul> before </div>
otu_table.html:50:1 (otu_table.Rd:12): Warning: missing </ul> before </div>
phy_tree.html:51:1 (phy_tree.Rd:13): Warning: missing </ul> before </div>
psmelt.html:52:1 (psmelt.Rd:14): Warning: missing </ul> before </div>
sample_data.html:50:1 (sample_data.Rd:12): Warning: missing </ul> before </div>
subset_samples.html:52:1 (subset_samples.Rd:14): Warning: missing </ul> before </div>
subset_taxa.html:52:1 (subset_taxa.Rd:14): Warning: missing </ul> before </div>
tax_table.html:50:1 (tax_table.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Thi Huyen Nguyen <thihuyen.nguyen@uhasselt.be>’

The BugReports field in DESCRIPTION has
  https://github.com/N-T-Huyen/MicrobiomeSurv/issues/new
which should likely be
  https://github.com/N-T-Huyen/MicrobiomeSurv/issues/new/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api.R’ ‘handlers-static.R’ ‘static-assets.Rd’
Maintainer: ‘Nancy R Xu <nancyranxu@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘adjusted.predictors.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
  File ‘micromacro.lm.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
    \keyword{variables,}
  File ‘micromacro.summary.Rd’:
    \keyword{micro-macro,}
    \keyword{modeling,}
Found the following HTML validation problems:
api_config_global.html:46:1 (api_config_global.Rd:10): Warning: missing </ul> before </div>
get_tmax.html:46:1 (get_tmax.Rd:10): Warning: missing </ul> before </div>
get_tnow.html:46:1 (get_tnow.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_dependencies.R’ ‘micromodal.R’ ‘micromodal.Rd’
    ‘use_micromodal.R’
Maintainer: ‘Lars Snipen <lars.snipen@nmbu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lars",
                      family = "Snipen",
                      role = c("aut", "cre"),
                      email = "lars.snipen@nmbu.no"),
               person(given = c("Kristian", "Hovde"),
                      family = "Liland",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
checkSolution.html:50:1 (checkSolution.Rd:12): Warning: missing </ul> before </div>
convertFlowsToMoles.html:54:1 (convertFlowsToMoles.Rd:14): Warning: missing </ul> before </div>
convertStatesToMoles.html:50:1 (convertStatesToMoles.Rd:12): Warning: missing </ul> before </div>
derivsDefault.html:54:1 (derivsDefault.Rd:14): Warning: missing </ul> before </div>
getValues.html:85:1 (getValues.Rd:34): Warning: missing </ul> before </div>
makeNetworkMatrices.html:63:1 (makeNetworkMatrices.Rd:21): Warning: missing </ul> before </div>
massBalanceFuncDefault.html:63:1 (massBalanceFuncDefault.Rd:19): Warning: missing </ul> before </div>
meanTraitFunc.html:62:1 (meanTraitFunc.Rd:18): Warning: missing </ul> before </div>
plotTraitChange.html:88:1 (plotTraitChange.Rd:36): Warning: missing </ul> before </div>
runMicroPopExample.html:47:1 (runMicroPopExample.Rd:10): Warning: missing </ul> before </div>
sumConcOverStrains.html:63:1 (sumConcOverStrains.Rd:21): Warning: missing </ul> before </div>
sumFlowOverStrains.html:54:1 (sumFlowOverStrains.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
quad_form.html:71:1 (quad_form.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Su Liwen <cpusullivan@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Su",
                    family = "Liwen",
                    role = c("aut", "cre"),
                    email = "cpusullivan@163.com")
as necessary.
Maintainer: ‘Nicholas Jhirad <lostnfound@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Jhirad",
                    role = c("aut", "cre"),
                    email = "lostnfound@gmail.com")
as necessary.
Maintainer: ‘Philipp Gaffert <philipp.gaffert@web.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cylinder-bundle-compartment.R’ ‘cylinder-bundle-geometry.R’
    ‘samplers.R’ ‘utils.R’
Found the following HTML validation problems:
CylinderBundleCompartment.html:142:1 (CylinderBundleCompartment.Rd:111): Warning: <h5> anchor "Usage" already defined
CylinderBundleCompartment.html:156:1 (CylinderBundleCompartment.Rd:123): Warning: <h5> anchor "Arguments" already defined
CylinderBundleCompartment.html:187:1 (CylinderBundleCompartment.Rd:148): Warning: <h5> anchor "Returns" already defined
CylinderBundleCompartment.html:225:1 (CylinderBundleCompartment.Rd:177): Warning: <h5> anchor "Usage" already defined
CylinderBundleCompartment.html:231:1 (CylinderBundleCompartment.Rd:181): Warning: <h5> anchor "Arguments" already defined
CylinderCompartment.html:109:1 (CylinderCompartment.Rd:77): Warning: <h5> anchor "Usage" already defined
CylinderCompartment.html:123:1 (CylinderCompartment.Rd:89): Warning: <h5> anchor "Arguments" already defined
CylinderCompartment.html:154:1 (CylinderCompartment.Rd:114): Warning: <h5> anchor "Returns" already defined
CylinderCompartment.html:191:1 (CylinderCompartment.Rd:142): Warning: <h5> anchor "Usage" already defined
CylinderCompartment.html:197:1 (CylinderCompartment.Rd:146): Warning: <h5> anchor "Arguments" already defined
CylinderRadialCompartment.html:98:1 (CylinderRadialCompartment.Rd:83): Warning: <h5> anchor "Usage" already defined
CylinderRadialCompartment.html:111:1 (CylinderRadialCompartment.Rd:94): Warning: <h5> anchor "Arguments" already defined
CylinderRadialCompartment.html:139:1 (CylinderRadialCompartment.Rd:116): Warning: <h5> anchor "Returns" already defined
CylinderRadialCompartment.html:193:1 (CylinderRadialCompartment.Rd:161): Warning: <h5> anchor "Usage" already defined
CylinderRadialCompartment.html:199:1 (CylinderRadialCompartment.Rd:165): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Peter Ziegler <peter.ziegler@zi-mannheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Wellek",
                      role = "aut"),
               person(given = "Peter",
                      family = "Ziegler",
                      role = c("aut", "cre"),
                      email = "peter.ziegler@zi-mannheim.de"))
as necessary.
Found the following HTML validation problems:
bmi.html:64:1 (bmi.Rd:20): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘flexImputeModel.R’
Found the following HTML validation problems:
measure_over.html:123:1 (measure_over.Rd:63): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘detect_segments.R’ ‘find_best_split.R’ ‘identify_migrations.R’
    ‘utils.R’
Maintainer: ‘Gergely Daróczi <daroczig@rapporter.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lajos",
                      family = "Bálint",
                      role = "aut",
                      email = "balint@demografia.hu"),
               person(given = "Gergely",
                      family = "Daróczi",
                      role = c("aut", "cre"),
                      email = "daroczig@rapporter.net"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
UpdatePhi.html:62:1 (UpdatePhi.Rd:18): Warning: missing </ul> before </div>
updateBeta.html:74:1 (updateBeta.Rd:24): Warning: missing </ul> before </div>
checkRd: (-1) miive.Rd:120-239: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:241-264: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:266-277: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:279-286: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:288-293: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:295-311: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:313-337: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:339-352: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:353-370: Lost braces in \itemize; meant \describe ?
checkRd: (-1) miive.Rd:426: Lost braces
   426 | \link{MIIVsem}{miivs}
       |               ^
checkRd: (-1) miivs.Rd:33-160: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
buildRestrictMat.html:52:1 (buildRestrictMat.Rd:10): Warning: missing </ul> before </div>
buildSSCP.html:61:1 (buildSSCP.Rd:14): Warning: missing </ul> before </div>
estimatesTable.html:54:1 (estimatesTable.Rd:14): Warning: missing </ul> before </div>
miive.2sls.html:62:1 (miive.2sls.Rd:18): Warning: missing </ul> before </div>
print.miive.html:51:1 (print.miive.Rd:12): Warning: missing </ul> before </div>
print.miivs.html:51:1 (print.miivs.Rd:12): Warning: missing </ul> before </div>
summary.miivs.html:65:1 (summary.miivs.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Zheng-Zheng Tang <tang@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zheng-Zheng",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "tang@biostat.wisc.edu")
as necessary.
Found the following HTML validation problems:
fitted.milr.html:56:1 (fitted.milr.Rd:15): Warning: missing </ul> before </div>
fitted.softmax.html:56:1 (fitted.softmax.Rd:15): Warning: missing </ul> before </div>
predict.milr.html:65:1 (predict.milr.Rd:20): Warning: missing </ul> before </div>
predict.softmax.html:65:1 (predict.softmax.Rd:20): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]’
  Authors@R: ‘Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]’
Found the following HTML validation problems:
convert_all_directory_files_as_csv.html:50:1 (convert_all_directory_files_as_csv.Rd:12): Warning: missing </ul> before </div>
download_ndc_files_as_csv.html:59:1 (download_ndc_files_as_csv.Rd:18): Warning: missing </ul> before </div>
remove_files.html:50:1 (remove_files.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Genevieve Robin <genevieve.robin@polytechnique.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Geneviève",
                      family = "Robin",
                      role = "aut"),
               person(given = "Genevieve",
                      family = "Robin",
                      role = "cre",
                      email = "genevieve.robin@polytechnique.edu"))
as necessary.

The Description field contains
  <arXiv:1806.09734>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) acs2016.Rd:14: Lost braces
    14 |   \item{BROADBND}{Cellular data plan for a smartphone or other mobile device}{1 yes 2 no}
       |                                                                              ^
checkRd: (-1) acs2016.Rd:21: Lost braces
    21 |   \item{MHP}{Mobile home costs}{$, yearly}
       |                                ^
Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Maintainer: ‘Qu Tang <tang.q@northeastern.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mingcong Wu <wumingcong@ruc.edu.cn>’

The Description field contains
  <arXiv:2309.15585>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Allison Throm <throm@wustl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allison",
                    family = "Throm",
                    role = c("aut", "cre"),
                    email = "throm@wustl.edu")
as necessary.
Maintainer: ‘Chia-Wei Hsu <Chia-Wei.Hsu@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Wei",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "chia-wei.hsu@stjude.org"),
               person(given = "Fang",
                      family = "Wang",
                      role = "aut"),
               person(given = "Rongji",
                      family = "Mu",
                      role = "aut"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"),
               person(given = "Guoying",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Dianpeng Wang <wdp@bit.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dianpeng",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wdp@bit.edu.cn"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Michele Filosi <michele.filosi@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
is.online.html:50:1 (is.online.Rd:12): Warning: missing </ul> before </div>
makeLibrary.html:57:1 (makeLibrary.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Jorge Luis Ojeda Cabrera <jojeda@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jorge", "Luis", "Ojeda"),
                    family = "Cabrera",
                    role = c("aut", "cre"),
                    email = "jojeda@unizar.es")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘makeWidgetCmd.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘mapFuncToWidget.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUI.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUIhelpers.Rd’:
    \keyword{
        utilities
        misc
      }
  File ‘miniGUIinputWidget.Rd’:
    \keyword{
        
        utilities
        misc
      }
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate.R’ ‘formula.R’ ‘toy_data.R’
Maintainer: ‘Shwetank Lall <shwetanklall@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:437:1 (inst/NEWS.Rd:228): Warning: missing </ul> before </div>
NEWS.html:59:1 (inst/NEWS.Rd:29): Warning: <h4> anchor "Changed" already defined
NEWS.html:87:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "Changed" already defined
NEWS.html:123:1 (inst/NEWS.Rd:63): Warning: <h4> anchor "Changed" already defined
NEWS.html:181:1 (inst/NEWS.Rd:92): Warning: <h4> anchor "Changed" already defined
NEWS.html:209:1 (inst/NEWS.Rd:108): Warning: <h4> anchor "Added" already defined
NEWS.html:220:1 (inst/NEWS.Rd:113): Warning: <h4> anchor "Fixed" already defined
NEWS.html:235:1 (inst/NEWS.Rd:121): Warning: <h4> anchor "Changed" already defined
NEWS.html:251:1 (inst/NEWS.Rd:129): Warning: <h4> anchor "Added" already defined
NEWS.html:267:1 (inst/NEWS.Rd:138): Warning: <h4> anchor "Changed" already defined
NEWS.html:285:1 (inst/NEWS.Rd:149): Warning: <h4> anchor "Added" already defined
NEWS.html:310:1 (inst/NEWS.Rd:166): Warning: <h4> anchor "Changed" already defined
NEWS.html:350:1 (inst/NEWS.Rd:187): Warning: <h4> anchor "Changed" already defined
NEWS.html:380:1 (inst/NEWS.Rd:203): Warning: <h4> anchor "Added" already defined
NEWS.html:402:1 (inst/NEWS.Rd:214): Warning: <h4> anchor "Changed" already defined
NEWS.html:423:1 (inst/NEWS.Rd:224): Warning: <h4> anchor "Added" already defined
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘s3methods.R’
Maintainer: ‘Man Jin <mj2149@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Man",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "mj2149@gmail.com"),
               person(given = "Adam",
                      family = "Polis",
                      role = "aut"),
               person(given = "Jonathan",
                      family = "Hartzel",
                      role = "aut"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Joe Cheng [cre, aut], Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Joe Cheng [cre, aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Sebastian O. Schneider <sschneider@coll.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "O."),
                      family = "Schneider",
                      role = c("aut", "cre"),
                      email = "sschneider@coll.mpg.de"),
               person(given = "Giulia",
                      family = "Baldini",
                      role = "aut"))
as necessary.
Maintainer: ‘Katharine M. Mullen <mullenkate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timur", "V."),
                      family = "Elzhov",
                      role = "aut"),
               person(given = c("Katharine", "M."),
                      family = "Mullen",
                      role = c("aut", "cre"),
                      email = "mullenkate@gmail.com"),
               person(given = "Andrej-Nikolai",
                      family = "Spiess",
                      role = "aut"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut"))
as necessary.
Maintainer: ‘Jixiang Wu <jixiang.wu@sdstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jixiang",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "jixiang.wu@sdstate.edu")
as necessary.
Found the following HTML validation problems:
dot-compute_and_format.html:62:1 (dot-compute_and_format.Rd:18): Warning: missing </ul> before </div>
dot-j_correction.html:46:1 (dot-j_correction.Rd:10): Warning: missing </ul> before </div>
dot-time_interaction_lnRR.html:103:1 (dot-time_interaction_lnRR.Rd:45): Warning: missing </ul> before </div>
dot-time_interaction_lnVR.html:83:1 (dot-time_interaction_lnVR.Rd:33): Warning: missing </ul> before </div>
dot-time_pooled_sd.html:66:1 (dot-time_pooled_sd.Rd:20): Warning: missing </ul> before </div>
checkRd: (-1) gof.estimates.Rd:59-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gof.estimates.Rd:63-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gof.estimates.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:63-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:71-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vcov.mipfp.Rd:92-95: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Moriña <dmorina@ub.edu>’

The Description field contains
  Hernández-Herrera G, Moriña D, Navarro A. (2020) <arXiv:2007.15031>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sim.data.Rd:11: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:12: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:14: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:15: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:16: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:17: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) sim.data.Rd:27: Lost braces in \enumerate; meant \describe ?
Running ‘testthat.R’ [35s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(miRetrieve)
  > 
  > test_check("miRetrieve")
  [ FAIL 6 | WARN 15 | SKIP 0 | PASS 204 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-fitlda.R:35:5'): Tests that 'plot_lda_term' returns a plot ───
  `plot_lda` has type 'object', not 'list'.
  ── Failure ('test-jointargets.R:69:5'): Tests that targets can be plotted ──────
  typeof(plot_target) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:41:5'): Tests plotting scores ────────────────────
  typeof(plot_animal) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:42:5'): Tests plotting scores ────────────────────
  typeof(plot_patients) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:43:5'): Tests plotting scores ────────────────────
  typeof(plot_biomarker) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  ── Failure ('test-plotscore.R:44:5'): Tests plotting scores ────────────────────
  typeof(plot_own) not equal to "list".
  1/1 mismatches
  x[1]: "object"
  y[1]: "list"
  
  [ FAIL 6 | WARN 15 | SKIP 0 | PASS 204 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Cristian Yones <cyones@sinc.unl.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cristian",
                    family = "Yones",
                    role = c("aut", "cre"),
                    email = "cyones@sinc.unl.edu.ar")
as necessary.
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Siyao",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Stephan Artmann <stephanartmann@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephan",
                      family = "Artmann",
                      role = c("aut", "cre"),
                      email = "stephanartmann@gmx.net"),
               person(given = "Klaus",
                      family = "Jung",
                      role = "aut"),
               person(given = "Tim",
                      family = "Beissbarth",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
limma.one.sided.html:47:1 (limma.one.sided.Rd:7): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mirtjml.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
empirical_ES.html:109:1 (empirical_ES.Rd:61): Warning: <h3> anchor "DIF" already defined
print.mirt_df.html:56:1 (print.mirt_df.Rd:14): Warning: missing </ul> before </div>
print.mirt_list.html:56:1 (print.mirt_list.Rd:14): Warning: missing </ul> before </div>
print.mirt_matrix.html:56:1 (print.mirt_matrix.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dai",
                      family = "Feng",
                      role = "aut"),
               person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'library' or 'require' call not declared from: ‘maps’
Maintainer: ‘Dai Feng <daifeng.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dai",
                    family = "Feng",
                    role = c("aut", "cre"),
                    email = "daifeng.stat@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = "Ott",
                      family = "Toomet",
                      role = "aut"))
as necessary.
checkRd: (-1) sumKeepAttr.Rd:19: Lost braces
    19 |       (only relevant if code{x} has only one element).}
       |                             ^
Found the following HTML validation problems:
print.cv.galasso.html:51:1 (print.cv.galasso.Rd:12): Warning: missing </ul> before </div>
print.cv.saenet.html:51:1 (print.cv.saenet.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Zishu Zhan <zishu927@hotmail.com>’

The Description field contains
  Xiangjie Li and Jingxiao Zhang. (2022) <arXiv:2205.14994>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Faisal Maqbool Zahid <faisalmz99@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Faisal", "Maqbool"),
                    family = "Zahid",
                    role = c("aut", "cre"),
                    email = "faisalmz99@yahoo.com")
as necessary.
Maintainer: ‘Chong Wu <wuxx0845@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chong",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wuxx0845@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

The Description field contains
  A, Cabaña, A, Puig P. (2021) <arXiv:2003.09202v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
md.expprep.html:50:1 (md.expprep.Rd:12): Warning: missing </ul> before </div>
md.init.html:45:1 (md.init.Rd:10): Warning: missing </ul> before </div>
md.survdump.html:50:1 (md.survdump.Rd:12): Warning: missing </ul> before </div>
md.survprob.html:58:1 (md.survprob.Rd:16): Warning: missing </ul> before </div>
md.survtime.html:58:1 (md.survtime.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Moritz Marbach <moritz.marbach@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Moritz",
                    family = "Marbach",
                    role = c("aut", "cre"),
                    email = "moritz.marbach@tamu.edu")
as necessary.

The Description field contains
  <arXiv:2107.05427>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel J. Stekhoven <stekhoven@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "J."),
                    family = "Stekhoven",
                    role = c("aut", "cre"),
                    email = "stekhoven@stat.math.ethz.ch")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  missForest.Rd: randomForest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Sara Rejeb <sara.rejeb@live.fr>’

The Description field contains
  <arXiv:2202.07963>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
updateSd.old.html:64:1 (updateSd.old.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.composite.html:46:1 (is.composite.Rd:10): Warning: missing </ul> before </div>
is.contin.html:46:1 (is.contin.Rd:10): Warning: missing </ul> before </div>
is.discrete.html:46:1 (is.discrete.Rd:10): Warning: missing </ul> before </div>
is.dist.html:46:1 (is.dist.Rd:10): Warning: missing </ul> before </div>
is.mixture.html:46:1 (is.mixture.Rd:10): Warning: missing </ul> before </div>
is.standard.html:46:1 (is.standard.Rd:10): Warning: missing </ul> before </div>
is.transformed.html:46:1 (is.transformed.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Simon Grund <simon.grund@uni-hamburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Grund",
                      role = c("aut", "cre"),
                      email = "simon.grund@uni-hamburg.de"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = "aut"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
checkRd: (-1) PV.Rd:14: Lost braces
    14 | plausible value in turn; with code{rewrite=FALSE} a new data set is
       |                                   ^
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Teimouri",
                    role = c("aut", "cre", "cph", "ctb"),
                    email = "teimouri@aut.ac.ir",
                    comment = c(ORCID = "0000-0002-5371-9364"))
as necessary.
Maintainer: ‘Georgios Papageorgiou <gpapageo@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
three_peaks.html:46:1 (three_peaks.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Constantin Ahlmann-Eltze <artjom31415@googlemail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter Macdonald <pdmmac@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Macdonald",
                      role = c("aut", "cre"),
                      email = "pdmmac@mcmaster.ca"),
               person(given = c("with", "contributions", "from", "Juan"),
                      family = "Du",
                      role = "aut",
                      email = "duduyy@hotmail.com"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mixedCCA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexander White <whitealj@iu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/alexanderjwhite/mixedLSR
which should likely be
  https://github.com/alexanderjwhite/mixedLSR/issues
instead.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Michal",
                      family = "Trzesiok",
                      role = "aut"))
as necessary.
Maintainer: ‘Charlotte Dion <charlotte.dion@upmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlotte",
                      family = "Dion",
                      role = c("aut", "cre"),
                      email = "charlotte.dion@upmc.fr"),
               person(given = "Adeline",
                      family = "Sansom",
                      role = "aut"),
               person(given = "Simone",
                      family = "Hermann",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
chain2samples.html:54:1 (chain2samples.Rd:14): Warning: missing </ul> before </div>
diagnostic.html:50:1 (diagnostic.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Lorenzo Mercuri <lorenzo.mercuri@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lorenzo",
                      family = "Mercuri",
                      role = c("aut", "cre"),
                      email = "lorenzo.mercuri@unimi.it"),
               person(given = "Edit",
                      family = "Rroji",
                      role = "aut"))
as necessary.
checkRd: (-1) SLD.Rd:20: Escaped LaTeX specials: \&
Maintainer: ‘Marie-Karelle Riviere-Jourdan <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie-Karelle",
                      family = "Riviere-Jourdan",
                      role = c("aut", "cre"),
                      email = "eldamjh@gmail.com"),
               person(given = "France",
                      family = "Mentre",
                      role = "aut",
                      email = "france.mentre@inserm.fr"))
as necessary.
Maintainer: ‘Cristina Tortora <grikris1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristina",
                      family = "Tortora",
                      role = c("aut", "cre", "cph"),
                      email = "grikris1@gmail.com"),
               person(given = "Aisha",
                      family = "ElSherbiny",
                      role = "com"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = c("aut", "cph")),
               person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cph")),
               person(given = c("and", "Paul", "D."),
                      family = "McNicholas",
                      role = c("aut", "cph")),
               person(given = c("Donald", "D."),
                      family = "Amos.",
                      role = "ctb"))
as necessary.
Maintainer: ‘Bing Song <bing.song@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bing",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "bing.song@utsouthwestern.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Bug Fix
    Update Vignettes
    Function Optimizing
    New Functions
    Vignette
    Optimization
    Fix Bugs
    Add New Function
    Update Description Files
    Fix bugs
    New .R files
    Update Old .R files
Found the following HTML validation problems:
compileUtilityFunction.html:48:1 (compileUtilityFunction.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Cassandro Davi Emer <cde@actisys.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Cassandro", "Davi"),
                    family = "Emer",
                    role = c("aut", "cre"),
                    email = "cde@actisys.org")
as necessary.
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Brian C. Franczak <franczakb@macewan.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cre"),
                      email = "franczakb@macewan.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = c("aut", "cph")),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = c("aut", "cph")),
               person(given = c("Katherine", "L."),
                      family = "Burak",
                      role = "ctb"))
as necessary.
Maintainer: ‘Brian Stock <bstock09@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plot_prior.html:70:1 (plot_prior.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

The Description field contains
  <arXiv:2205.14067> and estimating parameters of the symmetric stable
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Derek Young <derek.young@uky.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiangwei Zhu <xwzhunc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiangwei",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "xwzhunc@gmail.com")
as necessary.
Maintainer: ‘Zihao Zheng <zihao.zheng@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihao",
                      family = "Zheng",
                      role = c("aut", "cre"),
                      email = "zihao.zheng@wisc.edu"),
               person(given = "Michael",
                      family = "A.Newton",
                      role = "aut"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Michael Sovic [aut, ccp, cre] (<https://orcid.org/0000-0002-8556-3704>), Francesca Savona [res], Zuzana Bohrerova [res, fnd], Seth Faith [ccp, ctb] (0000-0002-0441-9859)’
  Authors@R: ‘Michael Sovic [aut, ccp, cre] (ORCID: <https://orcid.org/0000-0002-8556-3704>), Francesca Savona [res], Zuzana Bohrerova [res, fnd], Seth Faith [ccp, ctb] (ORDIC: 0000-0002-0441-9859)’
Found the following HTML validation problems:
getInteraction.html:46:1 (getInteraction.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alexander Volkmann <alexander.volkmann@hu-berlin.de>’

The Description field contains
  Implementation for Volkmann, Umlauf, Greven (2023) <arXiv:2311.06409>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
MJM_predict.html:121:1 (MJM_predict.Rd:61): Warning: missing </ul> before </div>
sim_bamlss_predict.html:68:1 (sim_bamlss_predict.Rd:22): Warning: missing </ul> before </div>
sim_jmb_predict.html:68:1 (sim_jmb_predict.Rd:22): Warning: missing </ul> before </div>
sim_jmbamlss_eval.html:64:1 (sim_jmbamlss_eval.Rd:19): Warning: missing </ul> before </div>
sim_jmbayes_eval.html:64:1 (sim_jmbayes_eval.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Yalin Wang <wangyalin@mail.sdu.edu.cn>’

The Description field contains
  (2022) <arXiv:2207.09633>. In this package, we provide the algorithms
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
check_failed.html:46:1 (check_failed.Rd:10): Warning: missing </ul> before </div>
logLik.saem.mmkin.html:55:1 (logLik.saem.mmkin.Rd:14): Warning: missing </ul> before </div>
mkinds.html:142:1 (mkinds.Rd:84): Warning: <h5> anchor "Usage" already defined
mkinds.html:148:1 (mkinds.Rd:88): Warning: <h5> anchor "Arguments" already defined
mkindsg.html:146:1 (mkindsg.Rd:88): Warning: <h5> anchor "Usage" already defined
mkindsg.html:152:1 (mkindsg.Rd:92): Warning: <h5> anchor "Arguments" already defined
summary_listing.html:63:1 (summary_listing.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Jaki <thomas.jaki@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Jaki",
                    role = c("aut", "cre"),
                    email = "thomas.jaki@protonmail.com")
as necessary.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("B", "N"),
                    family = "Mandal",
                    role = c("aut", "cre"),
                    email = "mandal.stat@gmail.com")
as necessary.
Found the following HTML validation problems:
dot-onLoad.html:50:1 (dot-onLoad.Rd:12): Warning: missing </ul> before </div>
sampling_correlated.html:46:1 (sampling_correlated.Rd:10): Warning: missing </ul> before </div>
sampling_independent.html:46:1 (sampling_independent.Rd:10): Warning: missing </ul> before </div>
validate_inputs.html:98:1 (validate_inputs.Rd:42): Warning: missing </ul> before </div>
Maintainer: ‘Dmitriy Selivanov <selivanov.dmitriy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dmitriy",
                    family = "Selivanov",
                    role = c("aut", "cre"),
                    email = "selivanov.dmitriy@gmail.com")
as necessary.
Found the following HTML validation problems:
predict.html:60:1 (predict.Rd:20): Warning: missing </ul> before </div>
transform.html:60:1 (transform.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Philip D. Waggoner <philip.waggoner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "philip.waggoner@gmail.com")
as necessary.
checkRd: (-1) Texture.Rd:35: Escaped LaTeX specials: \&
checkRd: (-1) binom.diagnostics.Rd:33: Escaped LaTeX specials: \&
Maintainer: ‘David Charte <fdavidcl@ugr.es>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) mldrGUI.Rd:22-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:26-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mldrGUI.Rd:32-34: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Kenneth Knoblauch <ken.knoblauch@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Knoblauch",
                      role = c("aut", "cre"),
                      email = "ken.knoblauch@inserm.fr"),
               person(given = c("Laurence", "T."),
                      family = "Maloney",
                      role = "aut"),
               person(given = c("based", "in", "part", "on", "C", "code", "written", "by", "Laurence", "T."),
                      family = "Maloney",
                      role = "aut"),
               person(given = c("J.", "N."),
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Garrett M. Dancik <dancikg@easternct.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Garrett", "M."),
                    family = "Dancik",
                    role = c("aut", "cre"),
                    email = "dancikg@easternct.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) gp.list.Rd:16: Escaped LaTeX specials: \#
Found the following HTML validation problems:
plot.gof_mlergm.html:155:1 (plot.gof_mlergm.Rd:76): Warning: missing </ul> before </div>
Maintainer: ‘Josmar Mazucheli <jmazucheli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josmar",
                    family = "Mazucheli",
                    role = c("aut", "cre"),
                    email = "jmazucheli@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Christopher R John <chris.r.john86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Christopher", "R"),
                    family = "John",
                    role = c("aut", "cre"),
                    email = "chris.r.john86@gmail.com")
as necessary.
Maintainer: ‘Nicola Sartori <nicola.sartori@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Sartori",
                      role = c("aut", "cre"),
                      email = "nicola.sartori@unipd.it"),
               person(given = "Alessandra",
                      family = "Salvan",
                      role = "aut"),
               person(given = "Luigi",
                      family = "Pace",
                      role = "aut"))
as necessary.
Maintainer: ‘Richard Harris <rich.harris@bris.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Richard",
                      family = "Harris",
                      role = c("aut", "cre"),
                      email = "rich.harris@bris.ac.uk"),
               person(given = "Dewi",
                      family = "Owen",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘aggdata.Rd’:
    http://dx.doi.org/10.5257/census/aggregate-2011-1
  File ‘ethnicities.Rd’:
    http://dx.doi.org/10.5257/census/aggregate-2011-1
Found the following HTML validation problems:
print.fxindex.html:52:1 (print.fxindex.Rd:12): Warning: missing </ul> before </div>
print.impacts.html:51:1 (print.impacts.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) mlim.Rd:58: Lost braces
    58 |              Note that code{"XGB"} is only available in Mac OS and Linux. moreover,
       |                            ^
Found the following HTML validation problems:
LearnerGlmnet.html:138:1 (LearnerGlmnet.Rd:136): Warning: <h5> anchor "Usage" already defined
LearnerGlmnet.html:144:1 (LearnerGlmnet.Rd:140): Warning: <h5> anchor "Arguments" already defined
LearnerLightgbm.html:155:1 (LearnerLightgbm.Rd:159): Warning: <h5> anchor "Usage" already defined
LearnerLightgbm.html:161:1 (LearnerLightgbm.Rd:163): Warning: <h5> anchor "Arguments" already defined
LearnerRanger.html:129:1 (LearnerRanger.Rd:137): Warning: <h5> anchor "Usage" already defined
LearnerXgboost.html:155:1 (LearnerXgboost.Rd:160): Warning: <h5> anchor "Usage" already defined
LearnerXgboost.html:161:1 (LearnerXgboost.Rd:164): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Qingzhao Yu <qyu@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingzhao",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "qyu@lsuhsc.edu"),
               person(given = "Bin",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Bartlett",
                    role = c("aut", "cre"),
                    email = "jonathan.bartlett1@lshtm.ac.uk")
as necessary.
checkRd: (-1) refBasedCts.Rd:44: Lost braces
    44 | using reference based imputation as proposed by \doi{10.1080/10543406.2013.834911}{Carpenter et al (2013)}. This approach
       |                                                                                   ^
Maintainer: ‘Samara Kiihl <samara@ime.unicamp.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Samara",
                      family = "Kiihl",
                      role = c("aut", "cre"),
                      email = "samara@ime.unicamp.br"),
               person(given = c("Maria", "Jose"),
                      family = "Martinez-Garrido",
                      role = "aut"),
               person(given = "Arce",
                      family = "Domingo-Relloso",
                      role = "aut"),
               person(given = "Jose",
                      family = "Bermudez",
                      role = "aut"),
               person(given = "Maria",
                      family = "Tellez-Plaza",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Clement Mabire <clement.mabire@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fanny",
                      family = "Bonnafous",
                      role = "aut"),
               person(given = "Alexandra",
                      family = "Duhnen",
                      role = "aut"),
               person(given = "Louise",
                      family = "Gody",
                      role = "aut"),
               person(given = "Olivier",
                      family = "Guillaume",
                      role = c("aut", "cre")),
               person(given = "Brigitte",
                      family = "Mangin",
                      role = "aut"),
               person(given = "Prune",
                      family = "Pegot-Espagnet",
                      role = "aut"),
               person(given = "Vincent",
                      family = "Segura",
                      role = "aut"),
               person(given = c("Bjarni", "J."),
                      family = "Vilhjalmsson",
                      role = "aut"),
               person(given = "Clement",
                      family = "Mabire",
                      role = c("aut", "cre"),
                      email = "clement.mabire@inra.fr"),
               person(given = "Timothee",
                      family = "Flutre",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mlmm.gwas.Rd’:
    https://doi.org/10.1007/s00122-017-3003-4
    https://doi.org/10.1038/ng.2314
Maintainer: ‘Kuo-Jung Lee <kuojunglee@mail.ncku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kuo-Jung",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "kuojunglee@mail.ncku.edu.tw")
as necessary.
Maintainer: ‘Steve Walker <steve.walker@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Douglas",
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut",
                      email = "maechler@R-project.org"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut",
                      email = "bolker@mcmaster.ca"),
               person(given = "Steve",
                      family = "Walker",
                      role = "cre",
                      email = "steve.walker@utoronto.ca"))
as necessary.
Found the following HTML validation problems:
MatSqrtInverse.html:46:1 (MatSqrtInverse.Rd:10): Warning: missing </ul> before </div>
pool_pv.html:58:1 (pool_pv.Rd:16): Warning: missing </ul> before </div>
summary.mixPV.html:55:1 (summary.mixPV.Rd:14): Warning: missing </ul> before </div>
summary_all.html:46:1 (summary_all.Rd:10): Warning: missing </ul> before </div>
tidy.mixPV.html:55:1 (tidy.mixPV.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
miscmethods.mlogit.html:168:1 (miscmethods.mlogit.Rd:111): Warning: missing </ul> before </div>
Maintainer: ‘Jan Graffelman <jan.graffelman@upc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mikhail Popov <mikhail@mpopov.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘example.simfun.R’ ‘fit.surrogate.R’
Found the following HTML validation problems:
BenchmarkAggr.html:169:1 (BenchmarkAggr.Rd:128): Warning: <h5> anchor "Usage" already defined
BenchmarkAggr.html:175:1 (BenchmarkAggr.Rd:132): Warning: <h5> anchor "Arguments" already defined
BenchmarkAggr.html:198:1 (BenchmarkAggr.Rd:145): Warning: <h5> anchor "Usage" already defined
BenchmarkAggr.html:204:1 (BenchmarkAggr.Rd:149): Warning: <h5> anchor "Arguments" already defined
BenchmarkAggr.html:227:1 (BenchmarkAggr.Rd:162): Warning: <h5> anchor "Usage" already defined
BenchmarkAggr.html:233:1 (BenchmarkAggr.Rd:166): Warning: <h5> anchor "Arguments" already defined
BenchmarkAggr.html:268:1 (BenchmarkAggr.Rd:191): Warning: <h5> anchor "Usage" already defined
BenchmarkAggr.html:274:1 (BenchmarkAggr.Rd:195): Warning: <h5> anchor "Arguments" already defined
BenchmarkAggr.html:305:1 (BenchmarkAggr.Rd:216): Warning: <h5> anchor "Usage" already defined
BenchmarkAggr.html:315:1 (BenchmarkAggr.Rd:224): Warning: <h5> anchor "Arguments" already defined
BenchmarkAggr.html:350:1 (BenchmarkAggr.Rd:249): Warning: <h5> anchor "Usage" already defined
BenchmarkAggr.html:356:1 (BenchmarkAggr.Rd:253): Warning: <h5> anchor "Arguments" already defined
BenchmarkAggr.html:383:1 (BenchmarkAggr.Rd:270): Warning: <h5> anchor "Usage" already defined
BenchmarkAggr.html:389:1 (BenchmarkAggr.Rd:274): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
mlr_optimizers_async_successive_halving.html:150:1 (mlr_optimizers_async_successive_halving.Rd:103): Warning: <h5> anchor "Usage" already defined
mlr_optimizers_async_successive_halving.html:186:1 (mlr_optimizers_async_successive_halving.Rd:123): Warning: <h5> anchor "Usage" already defined
mlr_optimizers_async_successive_halving.html:192:1 (mlr_optimizers_async_successive_halving.Rd:127): Warning: <h5> anchor "Arguments" already defined
mlr_optimizers_hyperband.html:232:1 (mlr_optimizers_hyperband.Rd:194): Warning: <h5> anchor "Usage" already defined
mlr_optimizers_successive_halving.html:223:1 (mlr_optimizers_successive_halving.Rd:188): Warning: <h5> anchor "Usage" already defined
mlr_tuners_async_successive_halving.html:157:1 (mlr_tuners_async_successive_halving.Rd:111): Warning: <h5> anchor "Usage" already defined
mlr_tuners_hyperband.html:251:1 (mlr_tuners_hyperband.Rd:200): Warning: <h5> anchor "Usage" already defined
mlr_tuners_successive_halving.html:241:1 (mlr_tuners_successive_halving.Rd:193): Warning: <h5> anchor "Usage" already defined
Found the following HTML validation problems:
binary_params.html:78:1 (binary_params.Rd:33): Warning: missing </ul> before </div>
classif_params.html:74:1 (classif_params.Rd:31): Warning: missing </ul> before </div>
regr_params.html:67:1 (regr_params.Rd:26): Warning: missing </ul> before </div>
similarity_params.html:58:1 (similarity_params.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ResamplingSameOtherCV.html:185:1 (ResamplingSameOtherCV.Rd:150): Warning: <h5> anchor "Usage" already defined
ResamplingSameOtherCV.html:191:1 (ResamplingSameOtherCV.Rd:153): Warning: <h5> anchor "Arguments" already defined
ResamplingSameOtherCV.html:222:1 (ResamplingSameOtherCV.Rd:171): Warning: <h5> anchor "Usage" already defined
ResamplingSameOtherCV.html:228:1 (ResamplingSameOtherCV.Rd:174): Warning: <h5> anchor "Arguments" already defined
ResamplingSameOtherCV.html:242:1 (ResamplingSameOtherCV.Rd:182): Warning: <h5> anchor "Returns" already defined
ResamplingSameOtherSizesCV.html:215:1 (ResamplingSameOtherSizesCV.Rd:179): Warning: <h5> anchor "Usage" already defined
ResamplingSameOtherSizesCV.html:221:1 (ResamplingSameOtherSizesCV.Rd:182): Warning: <h5> anchor "Arguments" already defined
ResamplingSameOtherSizesCV.html:252:1 (ResamplingSameOtherSizesCV.Rd:200): Warning: <h5> anchor "Usage" already defined
ResamplingSameOtherSizesCV.html:258:1 (ResamplingSameOtherSizesCV.Rd:203): Warning: <h5> anchor "Arguments" already defined
ResamplingSameOtherSizesCV.html:272:1 (ResamplingSameOtherSizesCV.Rd:211): Warning: <h5> anchor "Returns" already defined
ResamplingVariableSizeTrainCV.html:169:1 (ResamplingVariableSizeTrainCV.Rd:118): Warning: <h5> anchor "Usage" already defined
ResamplingVariableSizeTrainCV.html:175:1 (ResamplingVariableSizeTrainCV.Rd:121): Warning: <h5> anchor "Arguments" already defined
ResamplingVariableSizeTrainCV.html:206:1 (ResamplingVariableSizeTrainCV.Rd:139): Warning: <h5> anchor "Usage" already defined
ResamplingVariableSizeTrainCV.html:212:1 (ResamplingVariableSizeTrainCV.Rd:142): Warning: <h5> anchor "Arguments" already defined
ResamplingVariableSizeTrainCV.html:226:1 (ResamplingVariableSizeTrainCV.Rd:150): Warning: <h5> anchor "Returns" already defined
'library' or 'require' calls not declared from:
  ‘future’ ‘mlr3tuning’
Found the following HTML validation problems:
TuningSpace.html:184:1 (TuningSpace.Rd:147): Warning: <h5> anchor "Usage" already defined
TuningSpace.html:190:1 (TuningSpace.Rd:151): Warning: <h5> anchor "Arguments" already defined
TuningSpace.html:223:1 (TuningSpace.Rd:170): Warning: <h5> anchor "Usage" already defined
TuningSpace.html:229:1 (TuningSpace.Rd:174): Warning: <h5> anchor "Arguments" already defined
TuningSpace.html:252:1 (TuningSpace.Rd:187): Warning: <h5> anchor "Usage" already defined
TuningSpace.html:268:1 (TuningSpace.Rd:197): Warning: <h5> anchor "Usage" already defined
TuningSpace.html:274:1 (TuningSpace.Rd:201): Warning: <h5> anchor "Arguments" already defined
TuningSpace.html:297:1 (TuningSpace.Rd:214): Warning: <h5> anchor "Usage" already defined
TuningSpace.html:303:1 (TuningSpace.Rd:218): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
predict_grid.html:61:1 (predict_grid.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cpoTemplate.html:116:1 (cpoTemplate.Rd:62): Warning: missing </ul> before </div>
Found the following HTML validation problems:
captureSpecials.html:48:1 (captureSpecials.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) MBOMultiObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:11-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOMultiObjResult.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:9-11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:13-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MBOSingleObjResult.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:18-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) error_handling.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mbo_parallel.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setMBOControlMultiObj.Rd:119-120: Lost braces
   119 | Notes in Computer Science, ISBN 978-3-642-37139-4, pp. 756{770,
       |                                                           ^
checkRd: (-1) trafos.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) trafos.Rd:29: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
getMBOInfillCrit.html:62:1 (getMBOInfillCrit.Rd:30): Warning: missing </ul> before </div>
plot.OptState.html:65:1 (plot.OptState.Rd:22): Warning: missing </ul> before </div>
plotMBOResult.html:69:1 (plotMBOResult.Rd:25): Warning: missing </ul> before </div>
print.MBOControl.html:53:1 (print.MBOControl.Rd:14): Warning: missing </ul> before </div>
proposePoints.html:46:1 (proposePoints.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
changeData.html:62:1 (changeData.Rd:20): Warning: missing </ul> before </div>
checkLearner.html:57:1 (checkLearner.Rd:17): Warning: missing </ul> before </div>
estimateResidualVariance.html:67:1 (estimateResidualVariance.Rd:23): Warning: missing </ul> before </div>
getHomogeneousEnsembleModels.html:50:1 (getHomogeneousEnsembleModels.Rd:12): Warning: missing </ul> before </div>
getProbabilities.html:50:1 (getProbabilities.Rd:12): Warning: missing </ul> before </div>
getTaskDescription.html:47:1 (getTaskDescription.Rd:11): Warning: missing </ul> before </div>
hasProperties.html:50:1 (hasProperties.Rd:12): Warning: missing </ul> before </div>
makeBaseWrapper.html:92:1 (makeBaseWrapper.Rd:42): Warning: missing </ul> before </div>
makeChainModel.html:52:1 (makeChainModel.Rd:14): Warning: missing </ul> before </div>
makeTaskDesc.html:84:1 (makeTaskDesc.Rd:45): Warning: missing </ul> before </div>
makeTaskDescInternal.html:77:1 (makeTaskDescInternal.Rd:29): Warning: missing </ul> before </div>
mlrFamilies.html:147:1 (mlrFamilies.Rd:33): Warning: missing </ul> before </div>
setHyperPars2.html:52:1 (setHyperPars2.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LearnerSurvCoxPHCox.html:117:1 (LearnerSurvCoxPHCox.Rd:130): Warning: <h5> anchor "Usage" already defined
LearnerSurvGlmnetCox.html:124:1 (LearnerSurvGlmnetCox.Rd:142): Warning: <h5> anchor "Usage" already defined
LearnerSurvRangerCox.html:124:1 (LearnerSurvRangerCox.Rd:145): Warning: <h5> anchor "Usage" already defined
LearnerSurvRpartCox.html:148:1 (LearnerSurvRpartCox.Rd:159): Warning: <h5> anchor "Usage" already defined
LearnerSurvXgboostAft.html:144:1 (LearnerSurvXgboostAft.Rd:166): Warning: <h5> anchor "Usage" already defined
LearnerSurvXgboostAft.html:150:1 (LearnerSurvXgboostAft.Rd:170): Warning: <h5> anchor "Arguments" already defined
LearnerSurvXgboostCox.html:140:1 (LearnerSurvXgboostCox.Rd:162): Warning: <h5> anchor "Usage" already defined
LearnerSurvXgboostCox.html:146:1 (LearnerSurvXgboostCox.Rd:166): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Ben Gorman <bgorman@GormAnalysis.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Gorman",
                    role = c("aut", "cre"),
                    email = "bgorman@gormanalysis.com")
as necessary.
checkRd: (-1) simpopmlx.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{fim}{the Fisher Information Matrix estimated by Monolix. fim={"sa", "lin"} (default="sa")}
       |                                                                    ^
Found the following HTML validation problems:
inlineDataFrame.html:58:1 (inlineDataFrame.Rd:16): Warning: missing </ul> before </div>
lixoft.read.table.html:54:1 (lixoft.read.table.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Deena", "M.A."),
                      family = "Gendoo",
                      role = "aut",
                      email = "deena.gendoo@utoronto.ca"),
               person(given = "Benjamin",
                      family = "Haibe-Kains",
                      role = c("aut", "cre"),
                      email = "benjamin.haibe.kains@utoronto.ca"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Qingzhao Yu <qyu@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingzhao",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "qyu@lsuhsc.edu"),
               person(given = "Bin",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
mmapchar-methods.html:79:1 (mmapchar-methods.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Jeffrey A. Ryan <jeff.a.ryan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "A."),
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "jeff.a.ryan@gmail.com")
as necessary.
File ‘mmap/libs/mmap.so’:
  Found non-API calls to R: ‘Rf_allocSExp’, ‘SET_ENCLOS’, ‘SET_FRAME’,
    ‘SET_HASHTAB’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Sebastian Hönel <sebastian.honel@lnu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Hönel",
                    role = c("aut", "cre"),
                    email = "sebastian.honel@lnu.se")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mmcif_data.Rd’ ‘mmcif_fit.Rd’ ‘mmcif_logLik.Rd’ ‘mmcif_pd_cond.Rd’
    ‘mmcif_pd_univariate.Rd’ ‘mmcif_sandwich.Rd’ ‘mmcif_start_values.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mmcif_fit.Rd: auglag
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kengo Nagashima <nshi1201@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mmcm-package.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
  File ‘mmcm.mvt.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
  File ‘mmcm.resamp.Rd’:
    http://dx.doi.org/10.2202/1544-6115.1560
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jaejoon",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "jjsong2@mdanderson.org")
as necessary.
Maintainer: ‘Chaojie Wang <wang910930@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chaojie",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wang910930@163.com")
as necessary.
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
    62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
       |                                                                               ^
Maintainer: ‘Charles-Edouard Giguere <ce.giguere@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles-Edouard",
                    family = "Giguere",
                    role = c("aut", "cre"),
                    email = "ce.giguere@gmail.com")
as necessary.
checkRd: (-1) mmeln.Rd:69: Lost braces; missing escapes or markup?
    69 |   \item{obj$M}{Number of total observations sum_{i=1}^N(pi)}
       |                                                 ^
Found the following HTML validation problems:
MMeM_terms.html:57:1 (MMeM_terms.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calculate_mme.html:62:1 (calculate_mme.Rd:14): Warning: missing </ul> before </div>
opioid_trial.html:70:1 (opioid_trial.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘E. Lopez-Vizcaino <esther.lopez@ige.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "E.",
                      family = "Lopez-Vizcaino",
                      role = c("aut", "cre"),
                      email = "esther.lopez@ige.eu"),
               person(given = "M.J.",
                      family = "Lombardia",
                      role = "aut"),
               person(given = "D.",
                      family = "Morales",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BF_for_everyone.R’ ‘rc_game_mgmt.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iht_interpreter.Rd’ ‘lr_pow.Rd’ ‘pj_pow.Rd’ ‘replext_helpers.R’
    ‘replext_helpers_pgsql.R’ ‘rm_interpreter.Rd’
Maintainer: ‘Nadezda Spiridovska <Spiridovska.N@tsi.lv>’

The Description field contains
  <arXiv:1901.09600v1> and algorithm of parameters estimation is based on
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David M Schruth <dschruth@anthropoidea.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "M"),
                    family = "Schruth",
                    role = c("aut", "cre"),
                    email = "dschruth@anthropoidea.org")
as necessary.
checkRd: (-1) average.fit.models.Rd:6: Lost braces; missing escapes or markup?
     6 | These function takes the output of pgls.iter and uses its list of objects { model fits, optimzations (e.g.AICc)} and performs a weighted average on the ctoefficients estimated in the former by weighting by the latter. The parameters can also optionally be converted to binary by specifying "binary=FALSE" or just running the alias wraper function for assessing evidence of variable importance (Burnham & Anderson 2000).
       |                                                                           ^
Maintainer: ‘David Winter <david.winter@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘"Tao Liu, PhD" <tliu@stat.brown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Tao",
                      family = "Liu"),
               person(given = c("PhD\"", "\"Yizhen"),
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "tliu@stat.brown.edu"),
               person(family = "ScM\"",
                      role = "aut",
                      email = "yizhen_xu@brown.edu"))
as necessary.
Maintainer: ‘Felix Held <felix.held@gmail.com>’

The Description field contains
  <arXiv:1911.04927>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++14: please drop specification unless essential
Maintainer: ‘Hideitsu Hino <hinohide@cs.tsukuba.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hideitsu",
                      family = "Hino",
                      role = c("aut", "cre"),
                      email = "hinohide@cs.tsukuba.ac.jp"),
               person(given = "Ken",
                      family = "Takano",
                      role = "aut"),
               person(given = "Yuki",
                      family = "Yoshikawa",
                      role = "aut"),
               person(given = "Noboru",
                      family = "Murata",
                      role = "aut"))
as necessary.
checkRd: (-1) k2d.Rd:26: Lost braces
    26 | d_ND(x,y) = sqrt{ k(x,x) - 2k(x,y) + k(y,y)}.
       |                 ^
checkRd: (-1) k2d.Rd:34: Lost braces
    34 | d_n(x,y) = 1 - k(x,y)/sqrt{ k(x,x)k(y,y)},
       |                           ^
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robin", "K.", "S."),
                      family = "Hankin",
                      role = c("aut", "cre"),
                      email = "hankin.robin@gmail.com"),
               person(given = c("P.", "M.", "E."),
                      family = "Altham",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
h_drop_levels.html:58:1 (h_drop_levels.Rd:16): Warning: missing </ul> before </div>
h_extra_levels.html:46:1 (h_extra_levels.Rd:10): Warning: missing </ul> before </div>
h_first_contain_categorical.html:54:1 (h_first_contain_categorical.Rd:14): Warning: missing </ul> before </div>
h_get_index.html:50:1 (h_get_index.Rd:12): Warning: missing </ul> before </div>
h_get_prediction_variance.html:54:1 (h_get_prediction_variance.Rd:14): Warning: missing </ul> before </div>
h_get_sim_per_subj.html:54:1 (h_get_sim_per_subj.Rd:14): Warning: missing </ul> before </div>
h_obtain_lvls.html:58:1 (h_obtain_lvls.Rd:16): Warning: missing </ul> before </div>
h_print_aic_list.html:50:1 (h_print_aic_list.Rd:12): Warning: missing </ul> before </div>
h_print_call.html:58:1 (h_print_call.Rd:16): Warning: missing </ul> before </div>
h_print_cov.html:54:1 (h_print_cov.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Steve Condylios <steve.condylios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steve",
                    family = "Condylios",
                    role = c("aut", "cre", "cph"),
                    email = "steve.condylios@gmail.com",
                    comment = c(ORCID = "0000-0003-0599-844X"))
as necessary.
Maintainer: ‘Eoin O'Connell <eoin.m.oconnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eoin",
                    family = "O'Connell",
                    role = c("aut", "cre"),
                    email = "eoin.m.oconnell@gmail.com")
as necessary.
Maintainer: ‘Benjamin J. Radford <benjamin.radford@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Benjamin", "J."),
                    family = "Radford",
                    role = c("aut", "cre"),
                    email = "benjamin.radford@gmail.com")
as necessary.
Found the following HTML validation problems:
hbeta.html:51:1 (hbeta.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Tae Kim <tk382@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tae",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "tk382@uchicago.edu")
as necessary.
Found the following significant warnings:
  mmvbvs.cpp:505:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MMVBVS.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘Jarad Niemi <niemi@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jarad",
                    family = "Niemi",
                    role = c("aut", "cre"),
                    email = "niemi@iastate.edu")
as necessary.
Maintainer: ‘Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>’

The Description field contains
  (2020) <arXiv:2009.07662>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de",
                    comment = c(ORCID = "0000-0002-8226-3132"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Wen Qu <wqu@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wen",
                      family = "Qu",
                      role = c("aut", "cre"),
                      email = "wqu@nd.edu"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Adelchi Azzalini <adelchi.azzalini@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adelchi",
                      family = "Azzalini",
                      role = c("aut", "cre"),
                      email = "adelchi.azzalini@unipd.it"),
               person(given = "Alan",
                      family = "Genz",
                      role = "aut",
                      comment = "most Fortran code"),
               person(given = "Alan",
                      family = "Miller",
                      role = "ctb",
                      comment = "Fortran routine PHI"),
               person(given = c("Michael", "J."),
                      family = "Wichura",
                      role = "ctb",
                      comment = "Fortran routine PHINV"),
               person(given = c("G.", "W."),
                      family = "Hill",
                      role = "ctb",
                      comment = "Fortran routine STDINV"),
               person(given = "Yihong",
                      family = "Ge.",
                      role = "ctb",
                      comment = "Fortran routines BNVU and MVBVU"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) mom.mtruncnorm.Rd:35: Lost braces
    35 |   \item{cum}{a logical value; if  code{TRUE}  (default value), cumulants 
       |                                       ^
checkRd: (-1) mom.mtruncnorm.Rd:43: Lost braces; missing escapes or markup?
    43 | The maximal value of {d} is \code{20}. If this threshold is exceeded, \code{NA}s
       |                      ^
checkRd: (-1) mt.Rd:110: Lost braces
   110 |   and code{tvpack}, downloaded in 2005 and again in 2007 from his webpage, 
       |           ^
Maintainer: ‘Ricardo Pio Monti <ricardo.monti08@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ricardo", "Pio"),
                      family = "Monti",
                      role = c("aut", "cre"),
                      email = "ricardo.monti08@gmail.com"),
               person(given = "Christoforos",
                      family = "Anagnostopoulos",
                      role = "aut"),
               person(given = "Giovanni",
                      family = "Montana",
                      role = "aut"))
as necessary.
Maintainer: ‘Bruno Ebner <bruno.ebner@kit.edu>’

The Description field contains
  (2020) <arXiv:2004.07332> titled "Tests for multivariate normality -- a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BHEP.Rd’:
    https://doi.org/10.1006/jmva.1997.1684
    https://doi.org/10.1093/biomet/70.3.723
  File ‘HJG.Rd’:
    https://doi.org/10.1007/s11749-018-0589-z
  File ‘HJM.Rd’:
    https://doi.org/10.1017/S0266466618000154
  File ‘HV.Rd’:
    https://doi.org/10.1007/s10463-019-00720-8
  File ‘HZ.Rd’:
    https://doi.org/10.1080/03610929008830400
  File ‘MQ1.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘MQ2.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘SR.Rd’:
    https://doi.org/10.1016/j.jmva.2003.12.002
  File ‘test.BHEP.Rd’:
    https://doi.org/10.1006/jmva.1997.1684
  File ‘test.HJG.Rd’:
    https://doi.org/10.1007/s11749-018-0589-z
  File ‘test.HJM.Rd’:
    https://doi.org/10.1017/S0266466618000154
  File ‘test.HV.Rd’:
    https://doi.org/10.1007/s10463-019-00720-8
  File ‘test.HZ.Rd’:
    https://doi.org/10.1080/03610929008830400
  File ‘test.MQ1.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘test.MQ2.Rd’:
    https://doi.org/10.1007/BF02595825
  File ‘test.SR.Rd’:
    https://doi.org/10.1016/j.jmva.2003.12.002
Maintainer: ‘Brett Mullins <brettcmullins@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brett",
                      family = "Mullins",
                      role = c("aut", "cre"),
                      email = "brettcmullins@gmail.com"),
               person(given = "Trevor",
                      family = "Harkreader",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Torsten Pook <torsten.pook@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Torsten",
                    family = "Pook",
                    role = c("aut", "cre"),
                    email = "torsten.pook@uni-goettingen.de")
as necessary.

Found the following (possibly) invalid URLs:
  URL: http:www.mobps.de
    From: DESCRIPTION
    Message: Invalid URL: missing authority part
checkRd: (-1) creating.phenotypic.transform.Rd:20: Lost braces
    20 | trafo <- function(x){ return(x^2)}
       |                     ^
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johann",
                      family = "Kraus",
                      role = "aut",
                      email = "johann.kraus@uni-ulm.de"),
               person(given = "Hans",
                      family = "Kestler",
                      role = "cre",
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
Maintainer: ‘Rishabh Gupta <rishabh.uk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rishabh",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "rishabh.uk@gmail.com"),
               person(given = c("Nicholas", "J."),
                      family = "Matzke",
                      role = "aut"),
               person(given = c("Dept.", "of", "Integrative"),
                      family = "Biology",
                      role = "aut"),
               person(given = "U.C.",
                      family = "Berkeley",
                      role = "aut"))
as necessary.
Maintainer: ‘Surajit Ray <surajit.ray@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Surajit",
                      family = "Ray",
                      role = c("aut", "cre"),
                      email = "surajit.ray@glasgow.ac.uk"),
               person(given = "Yansong",
                      family = "Cheng",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘choose.cluster.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘contourHMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘hard.HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘pHMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘plot.hmac.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘soft.HMAC.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
  File ‘summary.hmac.Rd’:
    \keyword{cluster, hierarchical, nested, modal}
checkRd: (-1) lientz.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lientz.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lientz.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modeest-package.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) vieu.Rd:56: Escaped LaTeX specials: \&
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:117:1 (inst/NEWS.Rd:58): Warning: missing </ul> before </div>
NEWS.html:31:1 (inst/NEWS.Rd:12): Warning: <h3> anchor "Changes-in-Version-0.9-6" already defined
Running ‘test-pmodel-test.R’ [22s/31s]
  Running ‘test-pmodel.R’ [33s/42s]
  Comparing ‘test-pmodel.Rout’ to ‘test-pmodel.Rout.save’ ... OK
  Running ‘test-pmtree.R’ [19s/25s]
  Comparing ‘test-pmtree.Rout’ to ‘test-pmtree.Rout.save’ ...13,18d12
< Warning message:
< `aes_string()` was deprecated in ggplot2 3.0.0.
< ℹ Please use tidy evaluation idioms with `aes()`.
< ℹ See also `vignette("ggplot2-in-packages")` for more information.
< ℹ The deprecated feature was likely used in the model4you package.
<   Please report the issue to the authors.
Found the following HTML validation problems:
objfun.pmodel_identity.html:63:1 (objfun.pmodel_identity.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_parsed_model.modeldb_lm.html:47:1 (as_parsed_model.modeldb_lm.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) modelDown.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) modelDown.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) modelDown.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) modelDown.Rd:31: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘combine.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stack_coeff.Rd: tibble
  stack_metrics.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  model_grid.Rd: train
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Peer Christensen <hr.pchristensen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peer",
                    family = "Christensen",
                    role = c("aut", "cre"),
                    email = "hr.pchristensen@gmail.com")
as necessary.
Maintainer: ‘Xinyong Tian <xinyongtian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xinyong",
                    family = "Tian",
                    role = c("aut", "cre"),
                    email = "xinyongtian@gmail.com")
as necessary.
Found the following HTML validation problems:
brier.html:76:1 (brier.Rd:34): Warning: missing </ul> before </div>
ce.html:79:1 (ce.Rd:37): Warning: missing </ul> before </div>
confusionMatrix.html:54:1 (confusionMatrix.Rd:14): Warning: missing </ul> before </div>
f1Score.html:54:1 (f1Score.Rd:14): Warning: missing </ul> before </div>
fScore.html:58:1 (fScore.Rd:16): Warning: missing </ul> before </div>
kappa.html:54:1 (kappa.Rd:14): Warning: missing </ul> before </div>
mae.html:76:1 (mae.Rd:34): Warning: missing </ul> before </div>
mcc.html:54:1 (mcc.Rd:14): Warning: missing </ul> before </div>
mlogLoss.html:50:1 (mlogLoss.Rd:12): Warning: missing </ul> before </div>
msle.html:79:1 (msle.Rd:37): Warning: missing </ul> before </div>
rmsle.html:79:1 (rmsle.Rd:37): Warning: missing </ul> before </div>
Found the following HTML validation problems:
geom_ref_line.html:54:1 (geom_ref_line.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Histogram.html:55:1 (Histogram.Rd:12): Warning: missing </ul> before </div>
NPercent.html:50:1 (NPercent.Rd:12): Warning: missing </ul> before </div>
Ncol.html:50:1 (Ncol.Rd:12): Warning: missing </ul> before </div>
PercentMissing.html:46:1 (PercentMissing.Rd:10): Warning: missing </ul> before </div>
config_modelsummary.html:73:1 (config_modelsummary.Rd:27): Warning: missing </ul> before </div>
escape_html.html:47:1 (escape_html.Rd:10): Warning: missing </ul> before </div>
escape_latex.html:55:1 (escape_latex.Rd:14): Warning: missing </ul> before </div>
fmt_decimal.html:54:1 (fmt_decimal.Rd:14): Warning: missing </ul> before </div>
fmt_sci.html:50:1 (fmt_sci.Rd:12): Warning: missing </ul> before </div>
fmt_significant.html:50:1 (fmt_significant.Rd:12): Warning: missing </ul> before </div>
fmt_statistic.html:50:1 (fmt_statistic.Rd:12): Warning: missing </ul> before </div>
fmt_term.html:50:1 (fmt_term.Rd:12): Warning: missing </ul> before </div>
glance_custom.html:52:1 (glance_custom.Rd:13): Warning: missing </ul> before </div>
update_modelsummary.html:46:1 (update_modelsummary.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pop_sd.Rd’ ‘tidy_summary.R’
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "Alberto", "Cardozo"),
                    family = "Delgado",
                    role = c("aut", "cre"),
                    email = "cardozorpackages@gmail.com")
as necessary.
Maintainer: ‘Philip Pallmann <pallmannp@cardiff.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
optiThresh.html:147:1 (optiThresh.Rd:56): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Yadu Balehosur <yadu@vizualytics.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yadu",
                    family = "Balehosur",
                    role = c("aut", "cre"),
                    email = "yadu@vizualytics.com")
as necessary.
Found the following HTML validation problems:
getxlUI.html:46:1 (getxlUI.Rd:10): Warning: missing </ul> before </div>
xldisp.html:62:1 (xldisp.Rd:18): Warning: missing </ul> before </div>
xldispUI.html:50:1 (xldispUI.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pred_se.html:87:1 (pred_se.Rd:35): Warning: missing </ul> before </div>
Maintainer: ‘Maria Schelling <schelling.rmaintainer@vodafone.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Schelling",
                      role = c("aut", "cre"),
                      email = "schelling.rmaintainer@vodafone.de"),
               person(given = "Cang",
                      family = "Hui",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
fit_modsem_da.html:62:1 (fit_modsem_da.Rd:20): Warning: missing </ul> before </div>
modsem_coef.html:51:1 (modsem_coef.Rd:12): Warning: missing </ul> before </div>
modsem_nobs.html:51:1 (modsem_nobs.Rd:12): Warning: missing </ul> before </div>
modsem_vcov.html:51:1 (modsem_vcov.Rd:12): Warning: missing </ul> before </div>
var_interactions.html:51:1 (var_interactions.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Yongbo Gan <yongbogan@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yongbo",
                      family = "Gan",
                      role = c("aut", "cre"),
                      email = "yongbogan@whu.edu.cn"),
               person(given = "Zhijian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Wei",
                      family = "Mei",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "Peter.Langfelder@gmail.com"),
               person(given = "Steve",
                      family = "Horvath",
                      role = "aut",
                      email = "SHorvath@mednet.ucla.edu"))
as necessary.
Maintainer: ‘Bo Wei <ckris@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Wei",
                    role = c("aut", "cre"),
                    email = "ckris@163.com")
as necessary.
Maintainer: ‘Sander Lestrade <samlestrade@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sander",
                    family = "Lestrade",
                    role = c("aut", "cre"),
                    email = "samlestrade@protonmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) CHECKSUCCESS.Rd:44: Escaped LaTeX specials: \&
Found the following HTML validation problems:
armadillo.delete_project_folder.html:50:1 (armadillo.delete_project_folder.Rd:12): Warning: missing </ul> before </div>
armadillo.install_packages.html:52:1 (armadillo.install_packages.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ruizhe Hou <houruizhe1210@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruizhe",
                      family = "Hou",
                      role = c("aut", "cre"),
                      email = "houruizhe1210@gmail.com"),
               person(given = "Lu",
                      family = "Lu",
                      role = "aut"))
as necessary.
Maintainer: ‘David Rossell <rosselldavid@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Rossell",
                      role = c("aut", "cre"),
                      email = "rosselldavid@gmail.com"),
               person(given = c("John", "D."),
                      family = "Cook",
                      role = "aut"),
               person(given = "Donatello",
                      family = "Telesca",
                      role = "aut"),
               person(given = "P.",
                      family = "Roebuck",
                      role = "aut"),
               person(given = "Oriol",
                      family = "Abril",
                      role = "aut"),
               person(given = "Miquel",
                      family = "Torrens",
                      role = "aut"))
as necessary.
Maintainer: ‘Dean Bodenham <deanbodenhambsse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dean",
                    family = "Bodenham",
                    role = c("aut", "cre"),
                    email = "deanbodenhambsse@gmail.com")
as necessary.
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lukasz",
                      family = "Komsta",
                      role = c("aut", "cre"),
                      email = "lukasz.komsta@umlub.pl"),
               person(given = "Frederick",
                      family = "Novomestky",
                      role = "aut",
                      email = "fnovomes@poly.edu"))
as necessary.
Found the following significant warnings:
  ./densities.h:58:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:83:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:108:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:133:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:160:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:215:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:240:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:265:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:462:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:487:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ./densities.h:512:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  nLogLike.cpp:242:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/momentuHMM.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LDA.Rd: lda
  img_plot.Rd: readJPEG
  ldk_contour.Rd: kde2d
  links_delaunay.Rd: delaunayn
  plot.LDA.Rd: kde2d
  plot.PCA.Rd: kde2d
  reLDA.Rd: predict.lda
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Running examples in ‘Momocs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_CV
> ### Title: Plots a cross-validation table as an heatmap
> ### Aliases: plot_CV plot_CV.default plot_CV.LDA
> 
> ### ** Examples
> 
> h <- hearts %>%
+      fgProcrustes(0.01) %>% coo_slide(ldk=2) %T>% stack %>%
+      efourier(6, norm=FALSE) %>% LDA(~aut)
iteration:  1 	gain: 30322 
iteration:  2 	gain: 1.2498 
iteration:  3 	gain: 0.34194 
iteration:  4 	gain: 0.0062954 
> 
> h %>% plot_CV()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the Momocs package.
  Please report the issue at <https://github.com/MomX/Momocs/issues>.
Warning: The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as
of ggplot2 3.3.4.
ℹ The deprecated feature was likely used in the Momocs package.
  Please report the issue at <https://github.com/MomX/Momocs/issues>.
> h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
> # you can customize the returned gg with some ggplot2 functions
> h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
> 
> # or build your own using the prepared data_frame:
> df <- h %>% plot_CV() %$% data
Error in eval(substitute(expr), data, enclos = parent.frame()) : 
  invalid 'envir' argument of type 'object'
Calls: %$% -> <Anonymous> -> with.default -> eval
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
calibrate_deviations      6.427  0.066   8.022
calibrate_reconstructions 5.848  0.031   8.221
calibrate_harmonicpower   4.440  0.060   5.323
Maintainer: ‘Dan Murphy <chiefmurphy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Murphy",
                    role = c("aut", "cre"),
                    email = "chiefmurphy@gmail.com")
as necessary.
Found the following HTML validation problems:
ssl_options.html:81:1 (ssl_options.Rd:33): Warning: missing </ul> before </div>
Found the following HTML validation problems:
templateMatching.html:159:1 (templateMatching.Rd:109): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
app_server.html:54:1 (app_server.Rd:14): Warning: missing </ul> before </div>
app_ui.html:46:1 (app_ui.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) circ_dist.Rd:21: Lost braces; missing escapes or markup?
    21 | The distance between two observations {i} and {j} of a circular variable {q}
       |                                       ^
checkRd: (-1) circ_dist.Rd:21: Lost braces; missing escapes or markup?
    21 | The distance between two observations {i} and {j} of a circular variable {q}
       |                                               ^
checkRd: (-1) circ_dist.Rd:21: Lost braces; missing escapes or markup?
    21 | The distance between two observations {i} and {j} of a circular variable {q}
       |                                                                          ^
Maintainer: ‘Marcelo Reginato <reginatobio@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Reginato",
                    role = c("aut", "cre"),
                    email = "reginatobio@yahoo.com.br")
as necessary.
Maintainer: ‘Berwin A. Turlach <Berwin.Turlach@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Olli Saarela <olli.saarela@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olli",
                      family = "Saarela",
                      role = c("aut", "cre"),
                      email = "olli.saarela@utoronto.ca"),
               person(given = "Christian",
                      family = "Rohrbeck",
                      role = "aut"))
as necessary.
Maintainer: ‘Frank Busing <busing@fsw.leidenuniv.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) legacy.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) legacy.Rd:40: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Scott Kostyshak <scott.kostyshak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("This", "version", "Kay"),
                      family = "Pilz",
                      role = "aut"),
               person(given = c("Steffanie", "Titoff.", "Earlier", "developements", "by", "Holger"),
                      family = "Dette",
                      role = "aut"),
               person(given = "Kay",
                      family = "Pilz.",
                      role = "aut"),
               person(given = "Scott",
                      family = "Kostyshak",
                      role = "cre",
                      email = "scott.kostyshak@gmail.com"))
as necessary.
Maintainer: ‘Christian Hendrik Leschinski <christian_leschinski@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Christian", "Hendrik"),
                    family = "Leschinski",
                    role = c("aut", "cre"),
                    email = "christian_leschinski@gmx.de")
as necessary.
Maintainer: ‘Dennis Boos <boos@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dennis",
                      family = "Boos",
                      role = c("aut", "cre"),
                      email = "boos@ncsu.edu"),
               person(given = "Kevin",
                      family = "Matthew",
                      role = "aut"),
               person(given = "Jason",
                      family = "Osborne",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_extended_question.Rd’ ‘define_question.Rd’
    ‘define_questions_from_csv.Rd’ ‘define_questions_from_data_frame.Rd’
    ‘define_questions_from_excel.Rd’ ‘generate_xml.Rd’
    ‘generate_xml_file.Rd’
Maintainer: ‘Keon-Woong Moon <cardiomoon@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
addLabelDf.html:50:1 (addLabelDf.Rd:12): Warning: missing </ul> before </div>
cat.test.html:54:1 (cat.test.Rd:14): Warning: missing </ul> before </div>
cbind.mytable.html:55:1 (cbind.mytable.Rd:14): Warning: missing </ul> before </div>
centerprint.html:55:1 (centerprint.Rd:14): Warning: missing </ul> before </div>
changeColnameLabel.html:46:1 (changeColnameLabel.Rd:10): Warning: missing </ul> before </div>
comma.html:50:1 (comma.Rd:12): Warning: missing </ul> before </div>
deleteRows.html:50:1 (deleteRows.Rd:12): Warning: missing </ul> before </div>
extractKind.html:46:1 (extractKind.Rd:10): Warning: missing </ul> before </div>
getLabel.html:54:1 (getLabel.Rd:14): Warning: missing </ul> before </div>
my.chisq.test.html:76:1 (my.chisq.test.Rd:25): Warning: missing </ul> before </div>
my.t.test.html:51:1 (my.t.test.Rd:12): Warning: missing </ul> before </div>
mytable_sub2.html:89:1 (mytable_sub2.Rd:36): Warning: missing </ul> before </div>
num_summary.html:47:1 (num_summary.Rd:10): Warning: missing </ul> before </div>
obj2linecount.html:47:1 (obj2linecount.Rd:10): Warning: missing </ul> before </div>
p2sig.html:47:1 (p2sig.Rd:10): Warning: missing </ul> before </div>
print.cbind.mytable.html:51:1 (print.cbind.mytable.Rd:12): Warning: missing </ul> before </div>
print.mytable.html:51:1 (print.mytable.Rd:12): Warning: missing </ul> before </div>
print.mytable.df.html:51:1 (print.mytable.df.Rd:12): Warning: missing </ul> before </div>
printmytable2.html:51:1 (printmytable2.Rd:12): Warning: missing </ul> before </div>
r.html:46:1 (r.Rd:10): Warning: missing </ul> before </div>
reprint.html:51:1 (reprint.Rd:12): Warning: missing </ul> before </div>
space.html:47:1 (space.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Martin Bialke <mosaic-projekt@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Bialke",
                      role = c("aut", "cre"),
                      email = "mosaic-projekt@uni-greifswald.de"),
               person(given = "Thea",
                      family = "Schwaneberg",
                      role = "aut",
                      email = "thea.schwaneberg@uni-greifswald.de"),
               person(given = "Rene",
                      family = "Walk",
                      role = "aut",
                      email = "rene.walk@uni-greifswald.de"))
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘bigram.R’ ‘moranajp.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stopwords.R’
checkRd: (-1) morphemepiece_cache_dir.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) morphemepiece_cache_dir.Rd:20-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) morphemepiece_cache_dir.Rd:22-24: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
plot.ILDSR2.html:51:1 (plot.ILDSR2.Rd:12): Warning: missing </ul> before </div>
plot.slider3d.html:81:1 (plot.slider3d.Rd:32): Warning: missing </ul> before </div>
write.slicerjson.html:68:1 (write.slicerjson.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
build_dN.html:48:1 (build_dN.Rd:10): Warning: missing </ul> before </div>
build_dX.html:48:1 (build_dX.Rd:10): Warning: missing </ul> before </div>
group_array.html:47:1 (group_array.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mortaar_plot_dx.html:54:1 (mortaar_plot_dx.Rd:14): Warning: missing </ul> before </div>
mortaar_plot_dx_frame.html:58:1 (mortaar_plot_dx_frame.Rd:16): Warning: missing </ul> before </div>
mortaar_plot_ex.html:54:1 (mortaar_plot_ex.Rd:14): Warning: missing </ul> before </div>
mortaar_plot_ex_frame.html:58:1 (mortaar_plot_ex_frame.Rd:16): Warning: missing </ul> before </div>
mortaar_plot_lx.html:54:1 (mortaar_plot_lx.Rd:14): Warning: missing </ul> before </div>
mortaar_plot_lx_frame.html:58:1 (mortaar_plot_lx_frame.Rd:16): Warning: missing </ul> before </div>
mortaar_plot_qx.html:54:1 (mortaar_plot_qx.Rd:14): Warning: missing </ul> before </div>
mortaar_plot_qx_frame.html:58:1 (mortaar_plot_qx_frame.Rd:16): Warning: missing </ul> before </div>
mortaar_plot_rel_popx.html:54:1 (mortaar_plot_rel_popx.Rd:14): Warning: missing </ul> before </div>
mortaar_plot_rel_popx_frame.html:58:1 (mortaar_plot_rel_popx_frame.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
bp_gap.model.html:65:1 (bp_gap.model.Rd:23): Warning: missing </ul> before </div>
compute_CI.html:74:1 (compute_CI.Rd:24): Warning: missing </ul> before </div>
find_fitted_values.html:54:1 (find_fitted_values.Rd:14): Warning: missing </ul> before </div>
find_observed_values.html:46:1 (find_observed_values.Rd:10): Warning: missing </ul> before </div>
find_record_ex.html:46:1 (find_record_ex.Rd:10): Warning: missing </ul> before </div>
find_tau.html:58:1 (find_tau.Rd:16): Warning: missing </ul> before </div>
prepare_data.html:48:1 (prepare_data.Rd:11): Warning: missing </ul> before </div>
prepare_data_for_prediction.html:58:1 (prepare_data_for_prediction.Rd:16): Warning: missing </ul> before </div>
print.DoubleGap.html:51:1 (print.DoubleGap.Rd:12): Warning: missing </ul> before </div>
print.MortalityGaps.data.html:51:1 (print.MortalityGaps.data.Rd:12): Warning: missing </ul> before </div>
print.predict.DoubleGap.html:51:1 (print.predict.DoubleGap.Rd:12): Warning: missing </ul> before </div>
print.summary.DoubleGap.html:51:1 (print.summary.DoubleGap.Rd:12): Warning: missing </ul> before </div>
sex_gap.model.html:61:1 (sex_gap.model.Rd:19): Warning: missing </ul> before </div>
summary.DoubleGap.html:51:1 (summary.DoubleGap.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fitExpExtrapolation.html:58:1 (fitExpExtrapolation.Rd:16): Warning: missing </ul> before </div>
mortalityTable.once.html:58:1 (mortalityTable.once.Rd:18): Warning: missing </ul> before </div>
mortalityTable.onceAndFuture.html:58:1 (mortalityTable.onceAndFuture.Rd:18): Warning: missing </ul> before </div>
mortalityTable.zeroes.html:50:1 (mortalityTable.zeroes.Rd:12): Warning: missing </ul> before </div>
pensionTables.load.html:59:1 (pensionTables.load.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Kaplan <kaplan@macalester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "T."),
                      family = "Kaplan",
                      role = "aut",
                      email = "kaplan@macalester.edu"),
               person(given = "Randall",
                      family = "Pruim",
                      role = "aut",
                      email = "rpruim@calvin.edu"),
               person(given = c("Nicholas", "J."),
                      family = "Horton",
                      role = "aut",
                      email = "nhorton@amherst.edu"),
               person(given = "Daniel",
                      family = "Kaplan",
                      role = "cre",
                      email = "kaplan@macalester.edu"))
as necessary.
Found the following HTML validation problems:
PE_fun1.html:48:1 (PE_fun1.Rd:13): Warning: missing </ul> before </div>
Picket.html:58:1 (Picket.Rd:18): Warning: missing </ul> before </div>
infer_RHS.html:55:1 (infer_RHS.Rd:16): Warning: missing </ul> before </div>
inline.html:66:1 (inline.Rd:24): Warning: missing </ul> before </div>
simpleYacasIntegrate.html:50:1 (simpleYacasIntegrate.Rd:12): Warning: missing </ul> before </div>
unbound.html:54:1 (unbound.Rd:15): Warning: missing </ul> before </div>
vector_arg.html:50:1 (vector_arg.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mosaic_tally.html:53:1 (mosaic_tally.Rd:15): Warning: missing </ul> before </div>
na.warn.html:52:1 (na.warn.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Randall Pruim <rpruim@calvin.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Randall",
                      family = "Pruim",
                      role = c("aut", "cre"),
                      email = "rpruim@calvin.edu"),
               person(given = "Daniel",
                      family = "Kaplan",
                      role = "aut",
                      email = "kaplan@macalester.edu"),
               person(given = "Nicholas",
                      family = "Horton",
                      role = "aut",
                      email = "nhorton@amherst.edu"))
as necessary.
Found the following HTML validation problems:
Broyden.html:63:1 (Broyden.Rd:18): Warning: missing </ul> before </div>
defunct-fetch.html:52:1 (defunct-fetch.Rd:20): Warning: missing </ul> before </div>
defunct.html:64:1 (defunct.Rd:36): Warning: missing </ul> before </div>
fortify.html:71:1 (fortify.Rd:26): Warning: missing </ul> before </div>
makeMap.html:95:1 (makeMap.Rd:43): Warning: missing </ul> before </div>
panel.levelcontourplot.html:133:1 (panel.levelcontourplot.Rd:63): Warning: missing </ul> before </div>
panel.lmbands.html:105:1 (panel.lmbands.Rd:47): Warning: missing </ul> before </div>
prop_test.html:82:1 (prop_test.Rd:36): Warning: missing </ul> before </div>
rescale.html:75:1 (rescale.Rd:31): Warning: missing </ul> before </div>
rsquared.html:50:1 (rsquared.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.mosum.stat.html:65:1 (plot.mosum.stat.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
preprocessedData.html:50:1 (preprocessedData.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘William George Underwood <wgu2@princeton.edu>’

The Description field contains
  and Cucuringu (2020) <arXiv:2004.01293>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mark Puttick <marknputtick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Puttick",
                      role = c("aut", "cre", "cph"),
                      email = "marknputtick@gmail.com"),
               person(given = "Gavin",
                      family = "Thomas",
                      role = c("aut", "cph")),
               person(given = "Rob",
                      family = "Freckleton",
                      role = c("aut", "cph")),
               person(given = "Magnus",
                      family = "Clarke",
                      role = "ctb"),
               person(given = "Travis",
                      family = "Ingram",
                      role = "ctb"),
               person(given = "David",
                      family = "Orme",
                      role = "ctb"),
               person(given = "Emmanuel",
                      family = "Paradis",
                      role = "ctb"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Andrew Tweedell <atweedell315@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘bin.Rd’:
    \keyword{bin,}
    \keyword{group,}
    \keyword{potentials,}
    \keyword{unit,}
  File ‘cumsum_mu_synch.Rd’:
    \keyword{recurrence,}
    \keyword{synchronization,}
    \keyword{unit,}
  File ‘mu_synch.Rd’:
    \keyword{Zscore,}
    \keyword{recurrence,}
    \keyword{sigmax,}
    \keyword{synchronization,}
    \keyword{unit,}
    \keyword{visual,}
  File ‘plot_bins.Rd’:
    \keyword{bin,}
    \keyword{plot,}
    \keyword{trains,}
    \keyword{unit,}
  File ‘recurrence_intervals.Rd’:
    \keyword{potentials,}
    \keyword{recurrence,}
    \keyword{unit,}
  File ‘visual_mu_synch.Rd’:
    \keyword{recurrence,}
    \keyword{synchronization,}
    \keyword{unit,}
  File ‘zscore_mu_synch.Rd’:
    \keyword{recurrence,}
    \keyword{synchronization,}
    \keyword{unit,}
Maintainer: ‘Birgit Erni <birgit.erni@uct.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Birgit", "Erni.", "Based", "on", "models", "developed", "by"),
                      family = "Underhill",
                      role = "aut",
                      email = "birgit.erni@uct.ac.za"),
               person(family = "Zucchini.",
                      role = "aut",
                      comment = "1988, 1990"),
               person(given = "Birgit",
                      family = "Erni",
                      role = "cre",
                      email = "birgit.erni@uct.ac.za"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
panel.mountainplot.html:62:1 (panel.mountainplot.Rd:18): Warning: missing </ul> before </div>
prepanel.mountainplot.html:50:1 (prepanel.mountainplot.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.mt_heatmap_raw.html:51:1 (print.mt_heatmap_raw.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.movedesign_check.html:51:1 (print.movedesign_check.Rd:12): Warning: missing </ul> before </div>
print.movedesign_input.html:51:1 (print.movedesign_input.Rd:12): Warning: missing </ul> before </div>
print.movedesign_output.html:51:1 (print.movedesign_output.Rd:12): Warning: missing </ul> before </div>
print.movedesign_preprocess.html:51:1 (print.movedesign_preprocess.Rd:12): Warning: missing </ul> before </div>
print.movedesign_report.html:51:1 (print.movedesign_report.Rd:12): Warning: missing </ul> before </div>
summary.movedesign_check.html:51:1 (summary.movedesign_check.Rd:12): Warning: missing </ul> before </div>
summary.movedesign_input.html:51:1 (summary.movedesign_input.Rd:12): Warning: missing </ul> before </div>
summary.movedesign_output.html:51:1 (summary.movedesign_output.Rd:12): Warning: missing </ul> before </div>
summary.movedesign_preprocess.html:51:1 (summary.movedesign_preprocess.Rd:12): Warning: missing </ul> before </div>
summary.movedesign_report.html:51:1 (summary.movedesign_report.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhu",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "zwang145@uthsc.edu"),
               person(given = c("with", "contributions", "from", "Achim"),
                      family = "Zeileis",
                      role = "aut"),
               person(given = "Simon",
                      family = "Jackman",
                      role = "aut"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "aut"),
               person(given = "Patrick",
                      family = "Breheny",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/zhuwang46/mpath
which should likely be
  https://github.com/zhuwang46/mpath/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘alias_column_names.R’ ‘bin_data.Rd’ ‘coverage.R’ ‘database.R’
    ‘decrypt_gps.Rd’ ‘import.R’ ‘import_functions.R’ ‘linking.R’
    ‘location_functions.R’ ‘sensor_functions.R’
Maintainer: ‘Ignacio López-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ignacio",
                    family = "López-de-Ullibarri",
                    role = c("aut", "cre"),
                    email = "ignacio.lopezdeullibarri@udc.es")
as necessary.
Maintainer: ‘Edgar Santos-Fernandez <edgar.santosfdez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Edgar",
                      family = "Santos-Fernandez",
                      role = c("aut", "cre"),
                      email = "edgar.santosfdez@gmail.com"),
               person(given = "Michele",
                      family = "Scagliarini.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
DeepCopy.html:62:1 (DeepCopy.Rd:30): Warning: <h4> anchor "copy" already defined
checkRd: (-1) genotype_data.Rd:7: Escaped LaTeX specials: \_
checkRd: (-1) genotype_data.Rd:18: Escaped LaTeX specials: \_
checkRd: (-1) phenotype_data.Rd:15: Escaped LaTeX specials: \_
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute-contribution.R’ ‘compute-headcount-ratio-adjusted.R’
    ‘compute-headcount-ratio.R’ ‘compute-mpi.R’ ‘compute_mpi.Rd’
    ‘create-deprivation-matrix.R’ ‘define-deprivation.R’
    ‘define-mpi-specs.R’ ‘define_deprivation.Rd’ ‘define_mpi_specs.Rd’
    ‘helpers.R’ ‘save_mpi.R’ ‘write-as-excel.R’
checkRd: (-1) glmfence.Rd:21: Lost braces; missing escapes or markup?
    21 | is performed where the boundary is cstar*hat(sigma)_{M,tildeM}.}
       |                                                     ^
checkRd: (-1) lmfence.Rd:21: Lost braces; missing escapes or markup?
    21 | is performed where the boundary is cstar*hat(sigma)_{M,tildeM}.}
       |                                                     ^
Found the following HTML validation problems:
print.af.html:60:1 (print.af.Rd:18): Warning: missing </ul> before </div>
print.vis.html:62:1 (print.vis.Rd:18): Warning: missing </ul> before </div>
process.fn.html:51:1 (process.fn.Rd:12): Warning: missing </ul> before </div>
summary.af.html:60:1 (summary.af.Rd:18): Warning: missing </ul> before </div>
txt.fn.html:55:1 (txt.fn.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
connectNodes.html:58:1 (connectNodes.Rd:16): Warning: missing </ul> before </div>
extractDataSummary.html:50:1 (extractDataSummary.Rd:12): Warning: missing </ul> before </div>
extractResiduals_1section.html:52:1 (extractResiduals_1section.Rd:13): Warning: missing </ul> before </div>
extractSampstat.html:52:1 (extractSampstat.Rd:13): Warning: missing </ul> before </div>
filter_inp_filelist.html:58:1 (filter_inp_filelist.Rd:18): Warning: missing </ul> before </div>
mplusModel_r6.html:392:1 (mplusModel_r6.Rd:258): Warning: missing </ul> before </div>
mplusModel_r6.html:206:1 (mplusModel_r6.Rd:144): Warning: <h5> anchor "Usage" already defined
mplusModel_r6.html:212:1 (mplusModel_r6.Rd:148): Warning: <h5> anchor "Arguments" already defined
mplusModel_r6.html:235:1 (mplusModel_r6.Rd:161): Warning: <h5> anchor "Usage" already defined
mplusModel_r6.html:241:1 (mplusModel_r6.Rd:165): Warning: <h5> anchor "Arguments" already defined
mplusModel_r6.html:268:1 (mplusModel_r6.Rd:182): Warning: <h5> anchor "Usage" already defined
mplusModel_r6.html:274:1 (mplusModel_r6.Rd:186): Warning: <h5> anchor "Arguments" already defined
mplusModel_r6.html:301:1 (mplusModel_r6.Rd:203): Warning: <h5> anchor "Usage" already defined
mplusModel_r6.html:307:1 (mplusModel_r6.Rd:207): Warning: <h5> anchor "Arguments" already defined
mplusModel_r6.html:336:1 (mplusModel_r6.Rd:226): Warning: <h5> anchor "Usage" already defined
mplusModel_r6.html:342:1 (mplusModel_r6.Rd:230): Warning: <h5> anchor "Arguments" already defined
mplusModel_r6.html:369:1 (mplusModel_r6.Rd:247): Warning: <h5> anchor "Usage" already defined
mplusModel_r6.html:375:1 (mplusModel_r6.Rd:251): Warning: <h5> anchor "Arguments" already defined
summary.mplus_submission_df.html:55:1 (summary.mplus_submission_df.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Chris Pardy <cooliomcdude@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Pardy",
                    role = c("aut", "cre"),
                    email = "cooliomcdude@gmail.com")
as necessary.
Maintainer: ‘Phuc H. Nguyen <phuc.nguyen.rcran@gmail.com>’

The Description field contains
  Nguyen et al. (2022) <arXiv:2209.08036>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
rsq2snr.html:46:1 (rsq2snr.Rd:10): Warning: missing </ul> before </div>
set_value.html:54:1 (set_value.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Francisco M. Fatore <fmfatore@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Francisco", "M."),
                      family = "Fatore",
                      role = c("aut", "cre"),
                      email = "fmfatore@gmail.com"),
               person(given = c("Samuel", "G."),
                      family = "Fadel",
                      role = "aut"))
as necessary.
Maintainer: ‘Kevin Burke <kevin.burke@ul.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Burke",
                    role = c("aut", "cre"),
                    email = "kevin.burke@ul.ie")
as necessary.
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahdi",
                      family = "Teimouri",
                      role = c("aut", "cre"),
                      email = "teimouri@aut.ac.ir"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut"))
as necessary.
Maintainer: ‘Henrik Singmann <singmann@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get.mpt.fia.Rd:60: Lost braces
    60 | \item{lnconst}{When inequality constraints are present, \code{lnconst} serves as an adjustment of code{lnInt}. It estimates the logarithm of the proportion of parameter space [0,1]^S that satisfies those inequality constraints, and the log integral term is given by \code{lnInt+lnconst}.
       |                                                                                                       ^
checkRd: (-1) prediction.plot.Rd:38: Lost braces
    38 | The labels on the x-axis. Default is \code{Tree 1} to code{Tree n}.
       |                                                           ^
Found the following HTML validation problems:
fit.mpt.html:308:1 (fit.mpt.Rd:207): Warning: <h3> anchor "_sec_note" already defined
fit.mpt.old.html:259:1 (fit.mpt.old.Rd:180): Warning: <h3> anchor "_sec_note" already defined
fit.mptinr.html:342:1 (fit.mptinr.Rd:194): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Paolo Frumento <paolo.frumento@unipi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paolo",
                    family = "Frumento",
                    role = c("aut", "cre"),
                    email = "paolo.frumento@unipi.it")
as necessary.
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Jeremy Oguamalam <jeremy.oguamalam@tuwien.ac.at>’

The Description field contains
  implementation of Oguamalam et al. (2023) <arXiv:2307.13509>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
logisticdetfct.html:62:1 (logisticdetfct.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
hmrfout.html:61:1 (hmrfout.Rd:21): Warning: missing </ul> before </div>
mrfout.html:61:1 (mrfout.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Chih-Li Sung <sungchih@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chih-Li",
                    family = "Sung",
                    role = c("aut", "cre"),
                    email = "sungchih@msu.edu")
as necessary.
Found the following HTML validation problems:
is_locker_dir.html:46:1 (is_locker_dir.Rd:10): Warning: missing </ul> before </div>
list_fst.html:47:1 (list_fst.Rd:10): Warning: missing </ul> before </div>
temp_ds.html:46:1 (temp_ds.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.sens_each.html:59:1 (as.data.frame.sens_each.Rd:16): Warning: missing </ul> before </div>
parseq_reference.html:50:1 (parseq_reference.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.list-mrgsims-method.html:51:1 (as.list-mrgsims-method.Rd:12): Warning: missing </ul> before </div>
env_get.html:52:1 (env_get.Rd:15): Warning: missing </ul> before </div>
env_ls.html:51:1 (env_ls.Rd:12): Warning: missing </ul> before </div>
env_update.html:54:1 (env_update.Rd:14): Warning: missing </ul> before </div>
ev_dplyr.html:57:1 (ev_dplyr.Rd:18): Warning: missing </ul> before </div>
ev_extract.html:62:1 (ev_extract.Rd:19): Warning: missing </ul> before </div>
file_show.html:58:1 (file_show.Rd:16): Warning: missing </ul> before </div>
matlist.html:83:1 (matlist.Rd:41): Warning: missing </ul> before </div>
matlist_ops.html:55:1 (matlist_ops.Rd:14): Warning: missing </ul> before </div>
mod.html:53:1 (mod.Rd:15): Warning: missing </ul> before </div>
mrgmod_extract.html:68:1 (mrgmod_extract.Rd:22): Warning: missing </ul> before </div>
mvgauss.html:54:1 (mvgauss.Rd:14): Warning: missing </ul> before </div>
numericlist-class.html:46:1 (numericlist-class.Rd:12): Warning: missing </ul> before </div>
numericlist.html:103:1 (numericlist.Rd:48): Warning: missing </ul> before </div>
numerics_only.html:56:1 (numerics_only.Rd:16): Warning: missing </ul> before </div>
obsaug.html:57:1 (obsaug.Rd:17): Warning: missing </ul> before </div>
plot_batch_mrgsims.html:96:1 (plot_batch_mrgsims.Rd:41): Warning: missing </ul> before </div>
show-cmt_list-method.html:47:1 (show-cmt_list-method.Rd:10): Warning: missing </ul> before </div>
show-mrgmod-method.html:47:1 (show-mrgmod-method.Rd:10): Warning: missing </ul> before </div>
show-parameter_list-method.html:47:1 (show-parameter_list-method.Rd:10): Warning: missing </ul> before </div>
summary.mrgmod.html:51:1 (summary.mrgmod.Rd:12): Warning: missing </ul> before </div>
tgrid_ops.html:78:1 (tgrid_ops.Rd:38): Warning: missing </ul> before </div>
touch_funs.html:50:1 (touch_funs.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Tom Stindl <t.stindl@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tom",
                      family = "Stindl",
                      role = c("aut", "cre"),
                      email = "t.stindl@unsw.edu.au"),
               person(given = "Feng",
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Jon Clayden <code@clayden.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Qi Yan <qy2253@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qi",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "qy2253@cumc.columbia.edu")
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Li",
                      family = "Pei",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
checkRd: (-1) MultiManhattan.Rd:33: Lost braces; missing escapes or markup?
    33 |         \item{LogTimes}{Magnification of {-log10(P-value)}; the default is
       |                                          ^
checkRd: (-1) MultiManhattan.Rd:35: Lost braces; missing escapes or markup?
    35 |     \item{LODTimes}{Magnification of {LOD score}; the default is 1.2.}
       |                                      ^
Maintainer: ‘Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Abirami S <abirami89@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abirami",
                    family = "S",
                    role = c("aut", "cre"),
                    email = "abirami89@gmail.com")
as necessary.
Maintainer: ‘Siqi Xu <sqxu@hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siqi",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "sqxu@hku.hk")
as necessary.
Maintainer: ‘Leo N. Geppert <geppert@statistik.uni-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Esther",
                      family = "Denecke",
                      role = "aut"),
               person(given = c("Leo", "N."),
                      family = "Geppert",
                      role = c("aut", "cre"),
                      email = "geppert@statistik.uni-dortmund.de"),
               person(given = "Steffen",
                      family = "Maletz",
                      role = "ctb"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "ctb"))
as necessary.
Maintainer: ‘Tianchen Qian <t.qian@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eliot",
                      family = "Wong-Toi",
                      role = "aut"),
               person(given = "Thabat",
                      family = "Dahdoul",
                      role = "aut"),
               person(given = "Tianchen",
                      family = "Qian",
                      role = c("aut", "cre"),
                      email = "t.qian@uci.edu"))
as necessary.
Found the following HTML validation problems:
getter.html:120:1 (getter.Rd:83): Warning: missing </ul> before </div>
values.html:53:1 (values.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Novia Permatasari <novia.permatasari@bps.go.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"),
               person(given = "Novia",
                      family = "Permatasari",
                      role = c("aut", "cre"),
                      email = "novia.permatasari@bps.go.id"))
as necessary.
Maintainer: ‘Novia Permatasari <novia.permatasari@bps.go.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Novia",
                      family = "Permatasari",
                      role = c("aut", "cre"),
                      email = "novia.permatasari@bps.go.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
checkRd: (-1) n.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) n.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) n.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
dot-check_lengths.html:47:1 (dot-check_lengths.Rd:11): Warning: missing </ul> before </div>
msaROutput.html:54:1 (msaROutput.Rd:14): Warning: missing </ul> before </div>
renderMsaR.html:54:1 (renderMsaR.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yonghui Dong <yonghui.dong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yonghui",
                    family = "Dong",
                    role = c("aut", "cre"),
                    email = "yonghui.dong@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/YonghuiDong/MSbox/issues/new
which should likely be
  https://github.com/YonghuiDong/MSbox/issues/new/issues
instead.
Found the following HTML validation problems:
data_not_PH.html:58:1 (data_not_PH.Rd:16): Warning: missing </ul> before </div>
data_under_PH.html:59:1 (data_under_PH.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Cristoforo Simonetto <Cristoforo.Simonetto@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristoforo",
                      family = "Simonetto",
                      role = c("aut", "cre"),
                      email = "cristoforo.simonetto@helmholtz-muenchen.de"),
               person(given = c("Jan", "Christian"),
                      family = "Kaiser",
                      role = "ctb"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
chart_ax_x.html:112:1 (chart_ax_x.Rd:60): Warning: <h3> anchor "num_fmt" already defined
chart_ax_y.html:118:1 (chart_ax_y.Rd:66): Warning: <h3> anchor "num_fmt" already defined
chart_data_labels.html:97:1 (chart_data_labels.Rd:43): Warning: missing </ul> before </div>
print.ms_chart.html:59:1 (print.ms_chart.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Monica Calderon-Santiago <b42casam@uco.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monica",
                    family = "Calderon-Santiago",
                    role = c("aut", "cre"),
                    email = "b42casam@uco.es")
as necessary.
Maintainer: ‘Phil Ferriere <pferriere@hotmail.com>’

Found the following (possibly) invalid file URI:
  URI: ./CONDUCT.md
    From: README.md
Maintainer: ‘Phil Ferriere <pferriere@hotmail.com>’

Found the following (possibly) invalid file URI:
  URI: ./CONDUCT.md
    From: README.md
Maintainer: ‘Chris Bradley <cbradley05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Bradley",
                    role = c("aut", "cre"),
                    email = "cbradley05@gmail.com")
as necessary.
Found the following HTML validation problems:
GenerateRandomWalk.html:58:1 (GenerateRandomWalk.Rd:16): Warning: missing </ul> before </div>
LH2OM.html:127:1 (LH2OM.Rd:81): Warning: <h4> anchor "filterMK" already defined
MSEextra.html:46:1 (MSEextra.Rd:10): Warning: missing </ul> before </div>
Range.html:54:1 (Range.Rd:14): Warning: missing </ul> before </div>
calcMean.html:46:1 (calcMean.Rd:10): Warning: missing </ul> before </div>
calcProb.html:46:1 (calcProb.Rd:10): Warning: missing </ul> before </div>
dnormal.html:58:1 (dnormal.Rd:16): Warning: missing </ul> before </div>
getEffhist.html:62:1 (getEffhist.Rd:18): Warning: missing </ul> before </div>
getsel.html:62:1 (getsel.Rd:18): Warning: missing </ul> before </div>
hist2.html:66:1 (hist2.Rd:20): Warning: missing </ul> before </div>
plot.Data.html:86:1 (plot.Data.Rd:35): Warning: missing </ul> before </div>
plot.MSE.html:51:1 (plot.MSE.Rd:12): Warning: missing </ul> before </div>
show-MSE.html:47:1 (show-MSE.Rd:10): Warning: missing </ul> before </div>
show-MSEtool.html:63:1 (show-MSEtool.Rd:28): Warning: missing </ul> before </div>
show-Rec.html:47:1 (show-Rec.Rd:10): Warning: missing </ul> before </div>
summary-Data.html:81:1 (summary-Data.Rd:32): Warning: missing </ul> before </div>
summary-MMSE.html:59:1 (summary-MMSE.Rd:16): Warning: missing </ul> before </div>
summary-MSE.html:59:1 (summary-MSE.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Kei Hirose <mail@keihirose.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kei",
                    family = "Hirose",
                    role = c("aut", "cre"),
                    email = "mail@keihirose.com")
as necessary.
'data(package=)' call not declared from: ‘MASS’
Maintainer: ‘Spencer Matthews <srmatthews98@gmail.com>’

The Description field contains
  proposed by Matthews, S. and Hartman, B.  (2021) <arXiv:2106.08990>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Steven Rozen <steverozen@pm.me>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "dmorina@ub.edu",
                      comment = "Universitat de Barcelona"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut",
                      comment = "Universitat Autònoma de Barcelona"),
               person(given = "Mireia",
                      family = "Diaz",
                      role = "aut",
                      comment = "Institut Català d'Oncologia"))
as necessary.
Maintainer: ‘Luca Scrucca <luca.scrucca@unipg.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Phil J Watson <philwatson.slr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Phil", "J"),
                    family = "Watson",
                    role = c("aut", "cre"),
                    email = "philwatson.slr@gmail.com")
as necessary.
Found the following files/directories:
  ‘Acceleration.pdf’ ‘File1.pdf’ ‘Forecast.pdf’ ‘Series.pdf’
  ‘Velocity.pdf’
Maintainer: ‘Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atsushi",
                    family = "Kawaguchi",
                    role = c("aut", "cre"),
                    email = "kawa_a24@yahoo.co.jp")
as necessary.
Found the following HTML validation problems:
bootMSmix.html:51:1 (bootMSmix.Rd:12): Warning: missing </ul> before </div>
rearrange_output_mix.html:50:1 (rearrange_output_mix.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
tidy.msm.est.html:57:1 (tidy.msm.est.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Hasan BULUT <hasan.bulut@omu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hasan",
                    family = "BULUT",
                    role = c("aut", "cre"),
                    email = "hasan.bulut@omu.edu.tr")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
msdata2etm.html:55:1 (msdata2etm.Rd:15): Warning: missing </ul> before </div>
summary.Cuminc.html:51:1 (summary.Cuminc.Rd:12): Warning: missing </ul> before </div>
trans2tra.html:46:1 (trans2tra.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
helpers.html:48:1 (helpers.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Kevin Michael Frick <kmfrick98@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kevin", "Michael"),
                    family = "Frick",
                    role = c("aut", "cre"),
                    email = "kmfrick98@gmail.com")
as necessary.
Maintainer: ‘Zhibing He <zhibingh@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhibing",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "zhibingh@asu.edu"),
               person(given = "Dan",
                      family = "Cheng",
                      role = "aut"))
as necessary.

The Description field contains
  Schwartzman (2015) <arXiv:1504.06384>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  htest_LRTest.cpp:260:28: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/MSTest.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘David Magis <david.magis@uliege.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Magis",
                      role = c("aut", "cre"),
                      email = "david.magis@uliege.be",
                      comment = "U Liege, Belgium"),
               person(given = "Duanli",
                      family = "Yan",
                      role = "aut",
                      comment = "ETS, USA"),
               person(given = "Alina",
                      family = "von Davier",
                      role = "aut",
                      comment = "ACTNext, USA"))
as necessary.
Maintainer: ‘Elias Maciel <eliasmacielr@gmail.com>’

The Description field contains
  of Gustavo Sosa et al. (2016) <arXiv:1709.08730>, total correlation,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) multivar_joint_shannon_entropy.Rd:20: Lost braces
    20 |     {\code{table.variables}, \code{table.class}}.
       |     ^
checkRd: (-1) total_correlation.Rd:20: Lost braces
    20 |     {\code{table.variables}, \code{table.class}}.
       |     ^
Maintainer: ‘Josep A. Sanchez-Espigares <josep.a.sanchez@upc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Josep", "A."),
                      family = "Sanchez-Espigares",
                      role = c("aut", "cre"),
                      email = "josep.a.sanchez@upc.edu"),
               person(given = "Alberto",
                      family = "Lopez-Moreno",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TSMCP.Rd: grpreg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Didem Sari <dsari@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Didem",
                      family = "Sari",
                      role = c("aut", "cre"),
                      email = "dsari@iastate.edu"),
               person(given = c("Sarah", "M."),
                      family = "Ryan",
                      role = "aut",
                      email = "smryan@iastate.edu"))
as necessary.
Maintainer: ‘Ye Tian <ye.t@columbia.edu>’

The Description field contains
  Y., Weng, H., & Feng, Y. (2022) <arXiv:2209.15224>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Humza Haider <hshaider@ualberta.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Humza",
                    family = "Haider",
                    role = c("aut", "cre"),
                    email = "hshaider@ualberta.ca")
as necessary.
Maintainer: ‘Ruey S. Tsay <ruey.tsay@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ruey", "S."),
                      family = "Tsay",
                      role = c("aut", "cre"),
                      email = "ruey.tsay@chicagobooth.edu"),
               person(given = "David",
                      family = "Wood",
                      role = "aut"),
               person(given = "Jon",
                      family = "Lachmann",
                      role = "ctb"))
as necessary.
Found the following HTML validation problems:
Compute_Cn1n2.html:46:1 (Compute_Cn1n2.Rd:10): Warning: missing </ul> before </div>
print-MuChPoint.html:51:1 (print-MuChPoint.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oliver",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "MuckRock",
                      family = "Project",
                      role = "cph"))
as necessary.

The Description field contains
  the 'MuckRock' (https://www.muckrock.com/) project under the United
Please enclose URLs in angle brackets (<...>).
checkRd: (-1) coef.mdf.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{type}{: Argument that controls the type of parameters to be returned. If \code{type="persons"} (default), a vector with the person parameters is returned. When \code{type="items"} then a vector with the item ranks obtained by the MUDFOLD item selection algorithm is returned. If {type="all"} then a list with both person and item coefficients is returned to the user.
       |                                                                                                                                                                                                                                                                                                ^
Maintainer: ‘David Winsemius <dwinsemius@comcast.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Kenneth"),
                      family = "Hess",
                      role = "aut"),
               person(given = c("R", "port", "by", "R."),
                      family = "Gentleman",
                      role = "aut"),
               person(given = "David",
                      family = "Winsemius",
                      role = "cre",
                      email = "dwinsemius@comcast.net"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Ivan Tomic <info@ivantomic.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘intersection.Rd’:
    \keyword{intersect,}
  File ‘mulset.Rd’:
    \keyword{intersection,}
    \keyword{mulset,}
Maintainer: ‘Jose Luis Vicente Villardon <villardon@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "Luis"),
                      family = "Vicente-Villardon",
                      role = "aut"),
               person(given = "Laura",
                      family = "Vicente-Gonzalez",
                      role = "aut"),
               person(given = "Elisa",
                      family = "Frutos-Bernal",
                      role = "aut"),
               person(given = c("Jose", "Luis", "Vicente"),
                      family = "Villardon",
                      role = "cre",
                      email = "villardon@usal.es"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PolyOrdinalLogBiplot.Rd: fa, principal
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Serguei Sokol <sokol@insa-toulouse.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Serguei",
                    family = "Sokol",
                    role = c("aut", "cre"),
                    email = "sokol@insa-toulouse.fr")
as necessary.
Found the following HTML validation problems:
jrhs_ff.html:54:1 (jrhs_ff.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Luciano Selzer <luciano.selzer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Graves",
                      role = "aut"),
               person(given = "Hans-Peter",
                      family = "Piepho",
                      role = "aut"),
               person(given = c("Luciano", "Selzer", "with", "help", "from", "Sundar"),
                      family = "Dorai-Raj",
                      role = "aut"),
               person(given = "Luciano",
                      family = "Selzer",
                      role = "cre",
                      email = "luciano.selzer@gmail.com"))
as necessary.
Maintainer: ‘Mario Hasler <hasler@email.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mario",
                    family = "Hasler",
                    role = c("aut", "cre"),
                    email = "hasler@email.uni-kiel.de")
as necessary.
checkRd: (-1) MultEq-package.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MultEq-package.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MultEq-package.Rd:30: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Robin Ristl <robin.ristl@meduniwien.ac.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:74:1 (inst/NEWS.Rd:27): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:88:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:109:1 (inst/NEWS.Rd:44): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:123:1 (inst/NEWS.Rd:50): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:138:1 (inst/NEWS.Rd:57): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:165:1 (inst/NEWS.Rd:70): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:192:1 (inst/NEWS.Rd:83): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:207:1 (inst/NEWS.Rd:92): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:218:1 (inst/NEWS.Rd:97): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:233:1 (inst/NEWS.Rd:106): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:249:1 (inst/NEWS.Rd:114): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:267:1 (inst/NEWS.Rd:124): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:291:1 (inst/NEWS.Rd:136): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:308:1 (inst/NEWS.Rd:143): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:326:1 (inst/NEWS.Rd:153): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:341:1 (inst/NEWS.Rd:162): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:352:1 (inst/NEWS.Rd:167): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:366:1 (inst/NEWS.Rd:173): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:387:1 (inst/NEWS.Rd:184): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:401:1 (inst/NEWS.Rd:190): Warning: <h4> anchor "MINOR-CHANGES" already defined
Maintainer: ‘Michael Eichenberger <mike.eichenberger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Eichenberger",
                      role = c("aut", "cre"),
                      email = "mike.eichenberger@gmail.com"),
               person(given = "Carlo",
                      family = "Rosa",
                      role = "aut"))
as necessary.
Maintainer: ‘Marc A. Suchard <msuchard@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lam", "S.T."),
                      family = "Ho",
                      role = c("aut", "cre")),
               person(given = c("Marc", "A."),
                      family = "Suchard",
                      role = c("aut", "cre"),
                      email = "msuchard@ucla.edu"),
               person(given = c("Forrest", "W."),
                      family = "Crawford",
                      role = "aut"),
               person(given = "Jason",
                      family = "Xu",
                      role = "ctb"),
               person(given = c("Vladimir", "N."),
                      family = "Minin",
                      role = "ctb"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Ana Belen Nieto Librero <ananieto@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Belen", "Nieto"),
                      family = "Librero",
                      role = c("aut", "cre"),
                      email = "ananieto@usal.es"),
               person(given = "Nora",
                      family = "Baccala",
                      role = "aut",
                      email = "norabaccala@gmail.com"),
               person(given = c("Purificacion", "Vicente"),
                      family = "Galindo",
                      role = "aut",
                      email = "purivg@usal.es"),
               person(given = c("Purificacion", "Galindo"),
                      family = "Villardon",
                      role = "aut",
                      email = "pgalindo@usal.es"))
as necessary.
Maintainer: ‘Alexandra Sarafoglou <alexandra.sarafoglou@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Nils Norman Schiborr <nils-norman.schiborr@uni-bamberg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nour-al-dain Marzouka <Nour-al-dain.Marzouka@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nour-al-dain",
                    family = "Marzouka",
                    role = c("aut", "cre"),
                    email = "nour-al-dain.marzouka@med.lu.se")
as necessary.
checkRd: (-1) dbivCMP.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{bivprob}{Bivariate probabilities, {p00, p01, p10, p11}.}
       |                                         ^
Maintainer: ‘R. Salmeron <romansg@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Salmeron",
                      role = c("aut", "cre"),
                      email = "romansg@ugr.es"),
               person(given = "C.",
                      family = "Garcia",
                      role = "aut"),
               person(given = "J.",
                      family = "Garcia",
                      role = "aut"))
as necessary.
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Curran",
                      role = c("aut", "cre"),
                      email = "j.curran@auckland.ac.nz"),
               person(given = "Aaron",
                      family = "Williams",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Kelleher",
                      role = "aut"),
               person(given = "Dave",
                      family = "Barber",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
cat_parallel.html:46:1 (cat_parallel.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alexander Volkmann <alexandervolkmann8@gmail.com>’

The Description field contains
  (multiFAMM), see Volkmann et al. (2021, <arXiv:2103.06606>). It builds
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
compute_var.html:63:1 (compute_var.Rd:19): Warning: missing </ul> before </div>
extract_var_info.html:49:1 (extract_var_info.Rd:11): Warning: missing </ul> before </div>
prepare_mfpca.html:59:1 (prepare_mfpca.Rd:17): Warning: missing </ul> before </div>
prune_mfpc.html:83:1 (prune_mfpc.Rd:30): Warning: missing </ul> before </div>
refit_for_weights.html:56:1 (refit_for_weights.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  data (Munko et al., 2023, <arXiv:2306.15259>). These procedures enable
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
chop_css.html:89:1 (chop_css.Rd:41): Warning: missing </ul> before </div>
Maintainer: ‘S. Gorsky <sgorsky@umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "S.",
                      family = "Gorsky",
                      role = c("aut", "cre"),
                      email = "sgorsky@umass.edu"),
               person(given = "L.",
                      family = "Ma",
                      role = "aut"))
as necessary.
Maintainer: ‘Jarrett Byrnes <jarrett.byrnes@umb.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Panos Rontogiannis <p.g.ronto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panos",
                    family = "Rontogiannis",
                    role = c("aut", "cre"),
                    email = "p.g.ronto@gmail.com")
as necessary.
Maintainer: ‘Marina Gomtsyan <marina.gomtsyan@agroparistech.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marina",
                    family = "Gomtsyan",
                    role = c("aut", "cre"),
                    email = "marina.gomtsyan@agroparistech.fr")
as necessary.

The Description field contains
  (2022), <arXiv:2208.14721>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mlgraph.Rd’
Maintainer: ‘"Markus Loecher" <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = c("Berlin", "School", "of"),
                      family = "Economics",
                      role = "aut"),
               person(family = "Law\"",
                      role = "aut",
                      email = "markus.loecher@gmail.com",
                      comment = "BSEL"))
as necessary.
Found the following HTML validation problems:
print.mlob_result.html:52:1 (print.mlob_result.Rd:12): Warning: missing </ul> before </div>
se.html:50:1 (se.Rd:12): Warning: missing </ul> before </div>
summary.mlob_result.html:51:1 (summary.mlob_result.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
align.plots.html:55:1 (align.plots.Rd:14): Warning: missing </ul> before </div>
covariate.balance.html:62:1 (covariate.balance.Rd:18): Warning: missing </ul> before </div>
is.mlpsa.html:46:1 (is.mlpsa.Rd:10): Warning: missing </ul> before </div>
print.covariate.balance.html:51:1 (print.covariate.balance.Rd:12): Warning: missing </ul> before </div>
print.mlpsa.html:51:1 (print.mlpsa.Rd:12): Warning: missing </ul> before </div>
print.psrange.html:51:1 (print.psrange.Rd:12): Warning: missing </ul> before </div>
print.xmlpsa.html:59:1 (print.xmlpsa.Rd:16): Warning: missing </ul> before </div>
summary.mlpsa.html:55:1 (summary.mlpsa.Rd:14): Warning: missing </ul> before </div>
summary.psrange.html:51:1 (summary.psrange.Rd:12): Warning: missing </ul> before </div>
xtable.mlpsa.html:90:1 (xtable.mlpsa.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Silvia D'Angelo <silvia.dangelo@ucd.ie>’

The Description field contains
  <arXiv:2006.02995>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘predict.R’ ‘sensitivity.R’ ‘treatment_profile.R’
Maintainer: ‘Jose Ameijeiras-Alonso <jose.ameijeiras@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jose",
                      family = "Ameijeiras-Alonso",
                      role = c("aut", "cre"),
                      email = "jose.ameijeiras@usc.es"),
               person(given = c("Rosa", "M."),
                      family = "Crujeiras",
                      role = "aut"),
               person(given = "Alberto",
                      family = "Rodríguez-Casal",
                      role = "aut"),
               person(given = c("The", "R", "Core", "Team"),
                      family = "1996-2012",
                      role = c("ctb", "cph"),
                      comment = "C function 'BinDist2' obtained from package 'stats'"),
               person(given = c("The", "R", "Foundation"),
                      family = "2005",
                      role = c("ctb", "cph"),
                      comment = "C function 'BinDist2' obtained from package 'stats'"))
as necessary.
Found the following HTML validation problems:
expit.html:46:1 (expit.Rd:10): Warning: missing </ul> before </div>
logit.html:52:1 (logit.Rd:14): Warning: missing </ul> before </div>
Running examples in ‘multinet-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: multinet.conversion
> ### Title: Conversion to a simple or multi graph
> ### Aliases: multinet.conversion as.igraph.multinet
> ###   as.igraph.Rcpp_RMLNetwork
> 
> ### ** Examples
> 
> net <- ml_aucs()
> # using the default merge.actors=TRUE we create a multigraph,
> # where each actor corresponds to a vertex in the result
> multigraph <- as.igraph(net)
Error in `make_empty_graph()`:
! `directed` must be a logical, not a number.
Backtrace:
    ▆
 1. ├─igraph::as.igraph(net)
 2. └─multinet:::as.igraph.Rcpp_RMLNetwork(net)
 3.   └─igraph::graph_from_data_frame(vertices = a_df, e_df, directed = dir)
 4.     └─igraph::make_empty_graph(n = 0, directed = directed)
 5.       └─cli::cli_abort("{.arg directed} must be a logical, not {.obj_type_friendly {directed}}.")
 6.         └─rlang::abort(...)
Execution halted
Found the following HTML validation problems:
loo.html:56:1 (loo.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Pablo J. Villacorta <pjvi@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pablo", "J."),
                    family = "Villacorta",
                    role = c("aut", "cre"),
                    email = "pjvi@decsai.ugr.es")
as necessary.
Found the following HTML validation problems:
convert_index.html:49:1 (convert_index.Rd:12): Warning: missing </ul> before </div>
dummy.html:81:1 (dummy.Rd:32): Warning: missing </ul> before </div>
matched_index.html:49:1 (matched_index.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
conformity.Check.html:56:1 (conformity.Check.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
multipanelfigure-deprecated.html:61:1 (multipanelfigure-deprecated.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Lachlan Coin <l.coin@imb.uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lachlan",
                      family = "Coin",
                      role = c("aut", "cre"),
                      email = "l.coin@imb.uq.edu.au"),
               person(given = "Paul",
                      family = "O'Reilly",
                      role = "aut"),
               person(given = "Yotsawat",
                      family = "Pompyen",
                      role = "aut"),
               person(given = "Clive",
                      family = "Hoggart",
                      role = "aut"),
               person(given = "Federico",
                      family = "Calboli",
                      role = "aut"))
as necessary.
checkRd: (-1) mPhen.defineOptions.Rd:4: Escaped LaTeX specials: \$
Maintainer: ‘Nicolas Froelich <nicfroe@posteo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolas",
                    family = "Froelich",
                    role = c("aut", "cre"),
                    email = "nicfroe@posteo.de")
as necessary.
Maintainer: ‘Pedro Araujo <pharaujo1094@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pedro", "Araujo", "Gustavo", "Lacerda", "<gustavolacerdas@gmail.com>", "Peter", "C.B.", "Phillips", "<peter.phillips@yale.edu>", "Shu-Ping", "Shi"),
                      family = "<shuping.shi@mq.edu.au>",
                      role = "aut",
                      email = "shuping.shi@mq.edu.au"),
               person(given = "Pedro",
                      family = "Araujo",
                      role = "cre",
                      email = "pharaujo1094@gmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘sadf.Rd’:
    \keyword{AugmentedDickey-FullerTest,}
Maintainer: ‘Yuqi Tian <yuqitian35@gmail.com>’

The Description field contains
  with Semiparametric Cumulative Probability Models". <arXiv:2207.02815>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Aurobindh Kalathil Puthanpura <kalat2@pdx.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aurobindh", "Kalathil"),
                    family = "Puthanpura",
                    role = c("aut", "cre"),
                    email = "kalat2@pdx.edu")
as necessary.
Maintainer: ‘Agnes Martine Nielsen <agni@dtu.dk>’

The Description field contains
  Dot Product Graph Model", arXiv preprint <arXiv:1811.12172> (Submitted
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) nullestimation.Rd:17: Lost braces; missing escapes or markup?
    17 |           \code{U}        \tab The common latent space vectors. U in R^{n x d}\cr
       |                                                                        ^
Maintainer: ‘Alexander Keyel <skeyel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Keyel",
                    role = c("aut", "cre"),
                    email = "skeyel@gmail.com")
as necessary.
Found the following HTML validation problems:
calc.mvd.html:59:1 (calc.mvd.Rd:16): Warning: missing </ul> before </div>
calc.mvo.html:50:1 (calc.mvo.Rd:12): Warning: missing </ul> before </div>
check.breaks.html:51:1 (check.breaks.Rd:13): Warning: missing </ul> before </div>
data.preprocess.html:62:1 (data.preprocess.Rd:18): Warning: missing </ul> before </div>
df.categorize.html:50:1 (df.categorize.Rd:12): Warning: missing </ul> before </div>
get.breaks.html:51:1 (get.breaks.Rd:12): Warning: missing </ul> before </div>
get.traitspace.html:59:1 (get.traitspace.Rd:16): Warning: missing </ul> before </div>
listtotext.html:52:1 (listtotext.Rd:12): Warning: missing </ul> before </div>
make.trait.html:50:1 (make.trait.Rd:12): Warning: missing </ul> before </div>
matrix.check.html:46:1 (matrix.check.Rd:10): Warning: missing </ul> before </div>
plot.sensitivity.html:64:1 (plot.sensitivity.Rd:18): Warning: missing </ul> before </div>
sensitivity.boxplots.html:56:1 (sensitivity.boxplots.Rd:16): Warning: missing </ul> before </div>
utc.sim.html:74:1 (utc.sim.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Mark A. van de Wiel <mark.vdwiel@amsterdamumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mark", "A."),
                    family = "van de Wiel",
                    role = c("aut", "cre"),
                    email = "mark.vdwiel@amsterdamumc.nl")
as necessary.

The Description field contains
  be specified. See Van de Wiel et al. (2021), <arXiv:2005.09301>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Shixiao Zhang <praetere@gmail.com>’

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Please add one, modifying
  Authors@R: c(person(given = "Shixiao",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "praetere@gmail.com"),
               person(given = "Peisong",
                      family = "Han",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
outlier_filter.html:54:1 (outlier_filter.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Allison Meisner <allison.meisner@gmail.com>’

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Please add one, modifying
  Authors@R: person(given = "Allison",
                    family = "Meisner",
                    role = c("aut", "cre"),
                    email = "allison.meisner@gmail.com")
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Maintainer: ‘Hervé Monod <herve.monod@inra.fr>’

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  Authors@R: c(person(given = "Caroline",
                      family = "Bidot",
                      role = "aut",
                      email = "caroline.bidot@inra.fr"),
               person(given = "Matieyendou",
                      family = "Lamboni",
                      role = "aut",
                      email = "matieyendou.lamboni@gmail.com"),
               person(given = "Hervé",
                      family = "Monod",
                      role = c("aut", "cre"),
                      email = "herve.monod@inra.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
checkRd: (-1) biomasse.Rd:30: Lost braces
    30 | Makowski, D., Jeuffroy, M.-H., Gu\'{e}rif, M., 2004 Bayesian methods for
       |                                    ^
checkRd: (-1) climat.Rd:20: Lost braces
    20 | Makowski, D., Jeuffroy, M.-H., Gu\'{e}rif, M., 2004 Bayesian methods for
       |                                    ^
checkRd: (-1) simulmodel.Rd:15: Lost braces
    15 |   \item{\dots}{... }{possible fixed parameters of the R-function}
       |                     ^
Found the following HTML validation problems:
graph.bar.html:74:1 (graph.bar.Rd:21): Warning: missing </ul> before </div>
graph.pc.html:83:1 (graph.pc.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Xu Qin <xuqin@pitt.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@pitt.edu"),
               person(given = "Guanglei",
                      family = "Hong",
                      role = "aut"),
               person(given = "Jonah",
                      family = "Deutsch",
                      role = "aut"),
               person(given = "Edward",
                      family = "Bein",
                      role = "aut"))
as necessary.
Maintainer: ‘Cinzia Franceschini <cinziafranceschini@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cinzia",
                      family = "Franceschini",
                      role = c("aut", "cre"),
                      email = "cinziafranceschini@msn.com"),
               person(given = "Nicola",
                      family = "Loperfido",
                      role = "aut"))
as necessary.
Maintainer: ‘Sarra Chair <sarra.chair@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sarra",
                      family = "Chair",
                      role = c("aut", "cre"),
                      email = "sarra.chair@gmail.com"),
               person(given = "Malika",
                      family = "Charrad",
                      role = "aut"))
as necessary.
Maintainer: ‘Adam Clark <adam.tclark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "adam.tclark@gmail.com")
as necessary.
Found the following HTML validation problems:
bushmanplot.html:93:1 (bushmanplot.Rd:44): Warning: missing </ul> before </div>
lineplot_split_clone.html:98:1 (lineplot_split_clone.Rd:47): Warning: missing </ul> before </div>
Maintainer: ‘Karim Rahim <karim.rahim@queensu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karim",
                      family = "Rahim",
                      role = c("aut", "cre"),
                      email = "karim.rahim@queensu.ca"),
               person(given = c("Wesley", "S."),
                      family = "Burr",
                      role = "aut",
                      email = "wesleyburr@trentu.ca"))
as necessary.
Found the following HTML validation problems:
small2other.html:90:1 (small2other.Rd:35): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dist.to.matrix.html:46:1 (dist.to.matrix.Rd:10): Warning: missing </ul> before </div>
doubleCenterSymMat.html:50:1 (doubleCenterSymMat.Rd:12): Warning: missing </ul> before </div>
fastEuclideanCdm.html:50:1 (fastEuclideanCdm.Rd:12): Warning: missing </ul> before </div>
p.value.to.star.label.html:46:1 (p.value.to.star.label.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Raziur Rahman <razeeebuet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Raziur",
                    family = "Rahman",
                    role = c("aut", "cre"),
                    email = "razeeebuet@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘concat_pre_processors.Rd’
Maintainer: ‘Rawan Allozi <ralloz2@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rawan",
                      family = "Allozi",
                      role = c("aut", "cre"),
                      email = "ralloz2@uic.edu"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"))
as necessary.
Maintainer: ‘Zachary Fisher <fish.zachary@gmail.com>’

The Description field contains
  <arXiv:2007.05052>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/multivar.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/RobinHankin/multivator
which should likely be
  https://github.com/RobinHankin/multivator/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘accessors.R’ ‘export_json.R’ ‘extract.R’
Found the following HTML validation problems:
accessors.html:110:1 (accessors.Rd:70): Warning: missing </ul> before </div>
print.html:54:1 (print.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cox_obj_function.html:89:1 (cox_obj_function.Rd:37): Warning: missing </ul> before </div>
dev_function.html:59:1 (dev_function.Rd:17): Warning: missing </ul> before </div>
get_eta.html:60:1 (get_eta.Rd:18): Warning: missing </ul> before </div>
obj_function.html:94:1 (obj_function.Rd:40): Warning: missing </ul> before </div>
reshape_x_to_xlist.html:51:1 (reshape_x_to_xlist.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Eric F. Lock <elock@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eric", "F."),
                    family = "Lock",
                    role = c("aut", "cre"),
                    email = "elock@umn.edu")
as necessary.
Maintainer: ‘Nathaniel Graham <npgraham1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nathaniel",
                      family = "Graham",
                      role = c("aut", "cre"),
                      email = "npgraham1@gmail.com"),
               person(given = "Mahmood",
                      family = "Arai",
                      role = "aut"),
               person(given = "Björn",
                      family = "Hagströmer",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ecdfcis.html:62:1 (ecdfcis.Rd:18): Warning: missing </ul> before </div>
powerplot.html:73:1 (powerplot.Rd:27): Warning: missing </ul> before </div>
util.jplot.html:54:1 (util.jplot.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Maintainer: ‘Eric Nantz <eric.nantz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Dmitrienko",
                      role = "aut"),
               person(given = "Eric",
                      family = "Nantz",
                      role = c("aut", "cre"),
                      email = "eric.nantz@gmail.com"),
               person(given = "Gautier",
                      family = "Paux",
                      role = "aut"),
               person(given = c("with", "contributions", "by", "Thomas"),
                      family = "Brechenmacher",
                      role = "aut"))
as necessary.
Maintainer: ‘Martin Elff <martin@elff.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Elff",
                    role = c("aut", "cre"),
                    email = "martin@elff.eu")
as necessary.
checkRd: (-1) metricUnfolding.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:71-72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:73-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:75-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metricUnfolding.Rd:80-86: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Charlotte Wickham <cwickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charlotte",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "cwickham@gmail.com")
as necessary.
Found the following HTML validation problems:
theme_munsell.html:46:1 (theme_munsell.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ryan T. Moore <rtm@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "T."),
                      family = "Moore",
                      role = c("aut", "cre"),
                      email = "rtm@american.edu"),
               person(given = "Andrew",
                      family = "Reeves",
                      role = "aut",
                      email = "reeves@wustl.edu"))
as necessary.
Maintainer: ‘Fabian Krueger <Fabian.Krueger83@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Jordan",
                      role = "aut"),
               person(given = "Fabian",
                      family = "Krueger",
                      role = c("aut", "cre"),
                      email = "fabian.krueger83@gmail.com"))
as necessary.
Maintainer: ‘Aljaz Jelenko <aljaz.jelenko@amis.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aljaz",
                    family = "Jelenko",
                    role = c("aut", "cre"),
                    email = "aljaz.jelenko@amis.net")
as necessary.
Maintainer: ‘Alessandro Santuz <alessandro.santuz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Henning Prömpers <henning@proempers.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Henning",
                      family = "Prömpers",
                      role = c("aut", "cre"),
                      email = "henning@proempers.net"),
               person(given = "André",
                      family = "Guimarães",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/alsguimaraes/MUS
which should likely be
  https://github.com/alsguimaraes/MUS/issues
instead.
Maintainer: ‘Kornelius Rohmeyer <rohmeyer@small-projects.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("MuToss", "Coding"),
                      family = "Team",
                      role = "aut",
                      comment = "Berlin 2010"),
               person(given = "Gilles",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thorsten",
                      family = "Dickhaus",
                      role = "aut"),
               person(given = "Niklas",
                      family = "Hack",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Kornelius",
                      family = "Rohmeyer",
                      role = c("aut", "cre"),
                      email = "rohmeyer@small-projects.de"),
               person(given = "Jonathan",
                      family = "Rosenblatt",
                      role = "aut"),
               person(given = "Marsel",
                      family = "Scheer",
                      role = "aut"),
               person(given = "Wiebke",
                      family = "Werft",
                      role = "aut"))
as necessary.
Maintainer: ‘Kornelius Rohmeyer <rohmeyer@small-projects.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("MuToss", "Coding"),
                      family = "Team",
                      role = "aut",
                      comment = "Berlin 2010"),
               person(given = "Gilles",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thorsten",
                      family = "Dickhaus",
                      role = "aut"),
               person(given = "Niklas",
                      family = "Hack",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Kornelius",
                      family = "Rohmeyer",
                      role = c("aut", "cre"),
                      email = "rohmeyer@small-projects.de"),
               person(given = "Jonathan",
                      family = "Rosenblatt",
                      role = "aut"),
               person(given = "Marsel",
                      family = "Scheer",
                      role = "aut"),
               person(given = "Wiebke",
                      family = "Werft",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
mutoss.plotCI.html:43:1 (mutoss.plotCI.Rd:6): Warning: missing </ul> before </div>
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Damiano",
                      family = "Fantini",
                      role = c("aut", "cre"),
                      email = "damiano.fantini@gmail.com"),
               person(given = "Vania",
                      family = "Vidimar",
                      role = "aut"),
               person(given = c("Joshua", "J"),
                      family = "Meeks",
                      role = "aut"))
as necessary.
Maintainer: ‘Mohit Dayal <mohitdayal2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mohit",
                    family = "Dayal",
                    role = c("aut", "cre"),
                    email = "mohitdayal2000@gmail.com")
as necessary.
Found the following HTML validation problems:
basis_random.html:50:1 (basis_random.Rd:10): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
checkRd: (-1) cv.glm1path.Rd:74: Lost braces
    74 | \code{\link{glm1path}}, \\code{\link{glm1}}, \code{\link{glm}}, \code{\link{family}}
       |                               ^
Found the following HTML validation problems:
set_ops.html:53:1 (set_ops.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Mohammed Sedki <mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.
Found the following HTML validation problems:
print-methods.html:47:1 (print-methods.Rd:12): Warning: missing </ul> before </div>
summary-methods.html:47:1 (summary-methods.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Mark V. Bravington <mark.bravington@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mark", "V."),
                    family = "Bravington",
                    role = c("aut", "cre"),
                    email = "mark.bravington@csiro.au")
as necessary.
Found the following HTML validation problems:
full.path.html:50:1 (full.path.Rd:10): Warning: missing </ul> before </div>
library.dynam.reg.html:74:1 (library.dynam.reg.Rd:24): Warning: missing </ul> before </div>
set.presave.hook.mvb.html:50:1 (set.presave.hook.mvb.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Denis Larocque <denis.larocque@hec.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denis",
                    family = "Larocque",
                    role = c("aut", "cre"),
                    email = "denis.larocque@hec.ca")
as necessary.
Maintainer: ‘Nelson Lee Afanador <nelson.afanador@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nelson", "Lee"),
                      family = "Afanador",
                      role = c("aut", "cre"),
                      email = "nelson.afanador@gmail.com"),
               person(given = "Thanh",
                      family = "Tran",
                      role = "aut"),
               person(given = "Lionel",
                      family = "Blanchet",
                      role = "aut"),
               person(given = "Richard",
                      family = "Baumgartner",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘DFA.R’ ‘mvDFA.R’ ‘simulate_Lorenz_noise.R’
Found the following HTML validation problems:
NB_cre.html:69:1 (NB_cre.Rd:27): Warning: missing </ul> before </div>
NB_mov.html:69:1 (NB_mov.Rd:27): Warning: missing </ul> before </div>
N_mov.html:69:1 (N_mov.Rd:27): Warning: missing </ul> before </div>
PB_cre.html:76:1 (PB_cre.Rd:31): Warning: missing </ul> before </div>
binary_cre.html:69:1 (binary_cre.Rd:27): Warning: missing </ul> before </div>
normal_cre.html:69:1 (normal_cre.Rd:27): Warning: missing </ul> before </div>
poisson_cre.html:76:1 (poisson_cre.Rd:31): Warning: missing </ul> before </div>
Maintainer: ‘Justin Williams <williazo@ucla.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The Description field contains
  Williams, J.R, and Crespi, C.M. (2020) <arxiv:2008.13767>. The methods
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) bal.Rd:156: Escaped LaTeX specials: \&
Found the following HTML validation problems:
D_C_check.html:61:1 (D_C_check.Rd:20): Warning: missing </ul> before </div>
X_check.html:46:1 (X_check.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘John P. Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "P."),
                    family = "Nolan",
                    role = c("aut", "cre"),
                    email = "jpnolan@american.edu")
as necessary.
Maintainer: ‘Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antonio",
                    family = "Gasparrini",
                    role = c("aut", "cre"),
                    email = "antonio.gasparrini@lshtm.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arthur",
                    family = "Allignol",
                    role = c("aut", "cre"),
                    email = "arthur.allignol@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: /https://cran.r-project.org/web/packages/mvna/index.html
    From: README.md
Maintainer: ‘ZHANG Chen <447974102@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "ZHANG",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "447974102@qq.com")
as necessary.
Maintainer: ‘Frank Technow <mvnggrad@fastmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frank",
                    family = "Technow",
                    role = c("aut", "cre"),
                    email = "mvnggrad@fastmail.com")
as necessary.
Maintainer: ‘Hesen Li <li.hesen.21@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hesen",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "li.hesen.21@gmail.com")
as necessary.
checkRd: (-1) MVNtestchar-package.Rd:16-17: Lost braces; missing escapes or markup?
    16 | {Provides a test of multivariate normality of a sample which does not require estimation of the nuisance parameters, the mean      vector and covariance matrix.  Rather, a sequence of transformations removes these nuisance parameters, resulting in a set of    sample matrices that are positive definite.  If, and only if the original data is multivariate normal, these matrices are       uniformly distributed on the space of positive definite matrices in the unit hyper-rectangle.  The package performs a goodness    of fit test of this hypothesis. In addition to the test, functions in the package give visualizations of the  support region    of positive definite matrices for p equals 2.
       | ^
Found the following HTML validation problems:
coef.mvord.html:52:1 (coef.mvord.Rd:12): Warning: missing </ul> before </div>
constraints.html:50:1 (constraints.Rd:13): Warning: missing </ul> before </div>
error_struct.html:98:1 (error_struct.Rd:33): Warning: missing </ul> before </div>
fitted.mvord.html:52:1 (fitted.mvord.Rd:12): Warning: missing </ul> before </div>
logLik.mvord.html:52:1 (logLik.mvord.Rd:12): Warning: missing </ul> before </div>
model.matrix.mvord.html:52:1 (model.matrix.mvord.Rd:12): Warning: missing </ul> before </div>
names_constraints.html:54:1 (names_constraints.Rd:14): Warning: missing </ul> before </div>
nobs.mvord.html:52:1 (nobs.mvord.Rd:12): Warning: missing </ul> before </div>
polycor.html:50:1 (polycor.Rd:12): Warning: missing </ul> before </div>
print.error_struct.html:51:1 (print.error_struct.Rd:12): Warning: missing </ul> before </div>
print.mvord.html:56:1 (print.mvord.Rd:14): Warning: missing </ul> before </div>
summary.mvord.html:60:1 (summary.mvord.Rd:16): Warning: missing </ul> before </div>
terms.mvord.html:52:1 (terms.mvord.Rd:12): Warning: missing </ul> before </div>
thresholds.html:54:1 (thresholds.Rd:15): Warning: missing </ul> before </div>
vcov.mvord.html:52:1 (vcov.mvord.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘P. Filzmoser <P.Filzmoser@tuwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Filzmoser",
                      role = "aut",
                      email = "P.Filzmoser@tuwien.ac.at"),
               person(given = "Moritz",
                      family = "Gschwandtner",
                      role = "aut",
                      email = "e0125439@student.tuwien.ac.at"),
               person(given = "P.",
                      family = "Filzmoser",
                      role = "cre",
                      email = "P.Filzmoser@tuwien.ac.at"))
as necessary.
checkRd: (-1) pkb.Rd:14: Escaped LaTeX specials: \# \# \#
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Constantin Weiser <constantin.weiser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Constantin",
                    family = "Weiser",
                    role = c("aut", "cre"),
                    email = "constantin.weiser@gmail.com",
                    comment = "University Mainz / Germany")
as necessary.
'library' or 'require' call not declared from: ‘mvtnorm’
Maintainer: ‘Douglas Whitaker <douglas.whitaker@msvu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Douglas",
                    family = "Whitaker",
                    role = c("aut", "cre"),
                    email = "douglas.whitaker@msvu.ca")
as necessary.
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URIs:
  URI: jean-eudes.dazard@case.edu
    From: README.md
  URI: huaxu77@gmail.com
    From: README.md
  URI: ahs4@case.edu
    From: README.md
Maintainer: ‘Tommy Jones <jones.thos.w@gmail.com>’

The Description field contains
  Jones (2019) <arXiv:1911.11061>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Elizabeth Gonzalez Estrada <egonzalez@colpos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elizabeth",
                      family = "Gonzalez-Estrada",
                      role = "aut"),
               person(given = c("Jose", "A."),
                      family = "Villasenor-Alva",
                      role = "aut"),
               person(given = c("Elizabeth", "Gonzalez"),
                      family = "Estrada",
                      role = "cre",
                      email = "egonzalez@colpos.mx"))
as necessary.
Maintainer: ‘Antonio Parisi <antonio.parisi@uniroma2.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Parisi",
                      role = c("aut", "cre"),
                      email = "antonio.parisi@uniroma2.it"),
               person(given = "Brunero",
                      family = "Liseo",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "ctb"),
               person(given = "Romain",
                      family = "Francois",
                      role = "ctb"))
as necessary.
Maintainer: ‘Han Chen <Han.Chen.2@uth.tmc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Han",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "han.chen.2@uth.tmc.edu")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:60:1 (inst/NEWS.Rd:27): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:80:1 (inst/NEWS.Rd:38): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:96:1 (inst/NEWS.Rd:48): Warning: <h4> anchor "Features" already defined
NEWS.html:111:1 (inst/NEWS.Rd:55): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:132:1 (inst/NEWS.Rd:65): Warning: <h4> anchor "Features" already defined
NEWS.html:152:1 (inst/NEWS.Rd:73): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:175:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:190:1 (inst/NEWS.Rd:98): Warning: <h4> anchor "Features" already defined
NEWS.html:202:1 (inst/NEWS.Rd:104): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:218:1 (inst/NEWS.Rd:113): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:244:1 (inst/NEWS.Rd:126): Warning: <h4> anchor "Bugfixes" already defined
NEWS.html:256:1 (inst/NEWS.Rd:132): Warning: <h4> anchor "Documentation" already defined
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Found the following HTML validation problems:
lake_id_xref.html:70:1 (lake_id_xref.Rd:21): Warning: missing </ul> before </div>
wis_lakes.html:60:1 (wis_lakes.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("B", "N"),
                    family = "Mandal",
                    role = c("aut", "cre"),
                    email = "mandal.stat@gmail.com")
as necessary.
Found the following HTML validation problems:
ContrastsGOLD.html:50:1 (ContrastsGOLD.Rd:12): Warning: missing </ul> before </div>
time_delay_embed.html:58:1 (time_delay_embed.Rd:16): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘get_individual_algebra_results.R’
Maintainer: ‘S. Ramachandran<ramu@igib.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Deepika",
                      family = "Kulshreshtha",
                      role = "aut"),
               person(given = "Rupanjali",
                      family = "Chaudhuri",
                      role = "aut"),
               person(given = "Surabhi",
                      family = "Seth",
                      role = "aut"),
               person(given = "S.",
                      family = "Ramachandran",
                      role = c("aut", "cre"),
                      email = "ramu@igib.in"))
as necessary.
Found the following HTML validation problems:
panel.cor.html:63:1 (panel.cor.Rd:19): Warning: missing </ul> before </div>
panel.hist.html:50:1 (panel.hist.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
debug_print.html:47:1 (debug_print.Rd:10): Warning: missing </ul> before </div>
execute_llm_tools.html:50:1 (execute_llm_tools.Rd:12): Warning: missing </ul> before </div>
get_config.html:46:1 (get_config.Rd:10): Warning: missing </ul> before </div>
myownrobs_server.html:46:1 (myownrobs_server.Rd:10): Warning: missing </ul> before </div>
parse_agent_response.html:47:1 (parse_agent_response.Rd:10): Warning: missing </ul> before </div>
policy_server.html:46:1 (policy_server.Rd:10): Warning: missing </ul> before </div>
policy_ui.html:46:1 (policy_ui.Rd:10): Warning: missing </ul> before </div>
save_api_key.html:46:1 (save_api_key.Rd:10): Warning: missing </ul> before </div>
send_prompt.html:84:1 (send_prompt.Rd:34): Warning: missing </ul> before </div>
send_prompt_async.html:84:1 (send_prompt_async.Rd:34): Warning: missing </ul> before </div>
set_config.html:50:1 (set_config.Rd:12): Warning: missing </ul> before </div>
set_initial_project.html:47:1 (set_initial_project.Rd:11): Warning: missing </ul> before </div>
settings_module.html:50:1 (settings_module.Rd:12): Warning: missing </ul> before </div>
validate_command_args.html:53:1 (validate_command_args.Rd:13): Warning: missing </ul> before </div>
validate_credentials.html:50:1 (validate_credentials.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Fu-Chang Hu <fuchang.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("International-Harvard", "Statistical", "Consulting"),
                      family = "Company",
                      role = "aut",
                      email = "nhsc2010@hotmail.com"),
               person(given = "Fu-Chang",
                      family = "Hu",
                      role = "cre",
                      email = "fuchang.hu@gmail.com"))
as necessary.
checkRd: (-1) mzipmed_data.Rd:22: Lost braces; missing escapes or markup?
    22 | @source {Simulated to serve as an example}
       |         ^
Found the following HTML validation problems:
getCategory.html:46:1 (getCategory.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

The Description field contains
  <doi:10.1109/TPAMI.2018.2889473>, <arXiv:1603.09320>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
write_naaccr.html:67:1 (write_naaccr.Rd:22): Warning: missing </ul> before </div>
write_naaccr_xml.html:86:1 (write_naaccr_xml.Rd:38): Warning: missing </ul> before </div>
Maintainer: ‘Gregory Jefferis <jefferis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephane",
                      family = "Mangenat",
                      role = "aut",
                      comment = "for 'libnabo'"),
               person(given = "Gregory",
                      family = "Jefferis",
                      role = c("aut", "cre"),
                      email = "jefferis@gmail.com"))
as necessary.
Maintainer: ‘Yaofang Hu <yaofangh@smu.edu>’

The Description field contains
  Wang (2023) <arXiv:2306.15616>. In addition to NAC, this package
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.NADAList.html:51:1 (print.NADAList.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
asSurv-methods.html:52:1 (asSurv-methods.Rd:20): Warning: missing </ul> before </div>
predict-methods.html:97:1 (predict-methods.Rd:55): Warning: missing </ul> before </div>
summary-methods.html:68:1 (summary-methods.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Sun-joo Lee <sjlee@air.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sun-joo",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "sjlee@air.org"),
               person(given = "Eric",
                      family = "Buehler",
                      role = "aut"),
               person(given = "Paul",
                      family = "Bailey",
                      role = "ctb"))
as necessary.
Maintainer: ‘Emmanuel Sikali <Emmanuel.Sikali@ed.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("NAEP", "Primer", "data", "by", "Emmanuel", "Sikali.", "Creation", "of", "R", "package", "by", "Paul"),
                      family = "Bailey",
                      role = "aut"),
               person(given = "Michael",
                      family = "Lee.",
                      role = "aut"),
               person(given = "Emmanuel",
                      family = "Sikali",
                      role = "cre",
                      email = "Emmanuel.Sikali@ed.gov"))
as necessary.
checkRd: (-1) M36NT2PM.dat.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) M36NT2PM.dat.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Qingliang Fan <michaelqfan@xmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingliang",
                      family = "Fan",
                      role = c("aut", "cre"),
                      email = "michaelqfan@xmu.edu.cn"),
               person(given = "KongYu",
                      family = "He",
                      role = "aut"),
               person(given = "Wei",
                      family = "Zhong",
                      role = "aut"))
as necessary.
checkRd: (-1) DSIVdata.Rd:15-23: Lost braces
    15 | for(i in 1:50){
       |               ^
checkRd: (-1) DSIVdata.Rd:17-21: Lost braces
    17 |   for(j in 1:50){
       |                 ^
checkRd: (-1) DSIVdata.Rd:31-39: Lost braces
    31 | for(i in 1:20){
       |               ^
checkRd: (-1) DSIVdata.Rd:33-37: Lost braces
    33 |   for(j in 1:20){
       |                 ^
checkRd: (-1) DSLIVEdata.Rd:10-18: Lost braces
    10 | for(i in 1:200){
       |                ^
checkRd: (-1) DSLIVEdata.Rd:12-16: Lost braces
    12 |   for(j in 1:200){
       |                  ^
checkRd: (-1) DSLIVEdata.Rd:26-34: Lost braces
    26 | for(i in 1:20){
       |               ^
checkRd: (-1) DSLIVEdata.Rd:28-32: Lost braces
    28 |   for(j in 1:20){
       |                 ^
checkRd: (-1) DSLIVEdata.Rd:50-54: Lost braces
    50 | for(kk in 1:length(p)){
       |                       ^
Found the following HTML validation problems:
suppress_olw.html:46:1 (suppress_olw.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) drop_name_crossref.Rd:49: Lost braces; missing escapes or markup?
    49 | Takes one or several dois and extracts information from Crossref, then processes them into visual citations with \code{\link{drop_name}}. Requires {rcrossref} > v1.1, see README for further details.
       |                                                                                                                                                    ^
Maintainer: ‘Alencar Xavier <alenxav@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alencar",
                      family = "Xavier",
                      role = c("aut", "cre"),
                      email = "alenxav@gmail.com"),
               person(given = "William",
                      family = "Muir",
                      role = "aut"),
               person(given = "Katy",
                      family = "Rainey",
                      role = "aut"),
               person(given = "Shizhong",
                      family = "Xu.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'::' or ':::' import not declared from: ‘Matrix’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘impute_below.Rd’ ‘impute_factor.Rd’ ‘impute_fixed.Rd’
    ‘impute_mean.Rd’ ‘impute_median.Rd’ ‘impute_mode.Rd’ ‘impute_zero.Rd’
    ‘replace_na_with.Rd’
Found the following HTML validation problems:
impute_below.numeric.html:69:1 (impute_below.numeric.Rd:24): Warning: missing </ul> before </div>
miss-pct-prop-defunct.html:60:1 (miss-pct-prop-defunct.Rd:32): Warning: missing </ul> before </div>
plotly_helpers.html:71:1 (plotly_helpers.Rd:22): Warning: missing </ul> before </div>
stat_miss_point.html:122:1 (stat_miss_point.Rd:60): Warning: missing </ul> before </div>
File ‘nanoparquet/libs/nanoparquet.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
rep-nanoduration-method.html:68:1 (rep-nanoduration-method.Rd:29): Warning: missing </ul> before </div>
rep-nanoival-method.html:68:1 (rep-nanoival-method.Rd:29): Warning: missing </ul> before </div>
rep-nanoperiod-method.html:68:1 (rep-nanoperiod-method.Rd:29): Warning: missing </ul> before </div>
rep-nanotime-method.html:68:1 (rep-nanotime-method.Rd:29): Warning: missing </ul> before </div>
Maintainer: ‘Taha Zaghdoudi <zedtaha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Taha",
                    family = "Zaghdoudi",
                    role = c("aut", "cre"),
                    email = "zedtaha@gmail.com")
as necessary.
checkRd: (-1) fod.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fod.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fod.Rd:14: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Michael Schubert <mschu.dev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Schubert",
                    role = c("aut", "cre"),
                    email = "mschu.dev@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
dim.html:46:1 (dim.Rd:10): Warning: missing </ul> before </div>
intersect.html:64:1 (intersect.Rd:19): Warning: missing </ul> before </div>
intersect_list.html:58:1 (intersect_list.Rd:16): Warning: missing </ul> before </div>
lambda.html:67:1 (lambda.Rd:21): Warning: missing </ul> before </div>
File ‘naryn/libs/naryn.so’:
  Found non-API call to R: ‘Rf_GetOption’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
emr_cor.html:132:1 (emr_cor.Rd:78): Warning: <h3> anchor "iterator" already defined
emr_dist.html:120:1 (emr_dist.Rd:68): Warning: <h3> anchor "iterator" already defined
emr_extract.html:119:1 (emr_extract.Rd:69): Warning: <h3> anchor "iterator" already defined
emr_quantiles.html:92:1 (emr_quantiles.Rd:46): Warning: <h3> anchor "iterator" already defined
emr_screen.html:94:1 (emr_screen.Rd:48): Warning: <h3> anchor "iterator" already defined
emr_summary.html:85:1 (emr_summary.Rd:41): Warning: <h3> anchor "iterator" already defined
emr_track.create.html:105:1 (emr_track.create.Rd:53): Warning: <h3> anchor "iterator" already defined
Maintainer: ‘Eduardo Flores <eduardo@enelmargen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eduardo",
                    family = "Flores",
                    role = c("aut", "cre"),
                    email = "eduardo@enelmargen.org")
as necessary.
Found the following HTML validation problems:
c_seglengths.html:57:1 (c_seglengths.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
extract-methods.html:78:1 (extract-methods.Rd:35): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Version (2018-01-22)
    Version  (2017-08-22)
    Version
Found the following HTML validation problems:
as.neuronlist.neuronlistfh.html:51:1 (as.neuronlist.neuronlistfh.Rd:12): Warning: missing </ul> before </div>
cmtkreg.html:84:1 (cmtkreg.Rd:35): Warning: missing </ul> before </div>
is.neuroml.html:53:1 (is.neuroml.Rd:12): Warning: missing </ul> before </div>
read.vaa3draw.html:59:1 (read.vaa3draw.Rd:17): Warning: missing </ul> before </div>
sub2ind.html:50:1 (sub2ind.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
has.det.ID.html:57:1 (has.det.ID.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Guo Yu <gy63@cornell.edu>’

The Description field contains
  high-dimensional linear models of Yu, Bien (2017) <arXiv:1712.02412>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
getLam_olasso.html:46:1 (getLam_olasso.Rd:10): Warning: missing </ul> before </div>
getLam_slasso.html:50:1 (getLam_slasso.Rd:12): Warning: missing </ul> before </div>
olasso_slow.html:56:1 (olasso_slow.Rd:15): Warning: missing </ul> before </div>
plot.natural.cv.html:52:1 (plot.natural.cv.Rd:13): Warning: missing </ul> before </div>
plot.natural.path.html:52:1 (plot.natural.path.Rd:13): Warning: missing </ul> before </div>
print.natural.path.html:52:1 (print.natural.path.Rd:13): Warning: missing </ul> before </div>
standardize.html:52:1 (standardize.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Kosei Abe <mail@recyclebin.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kosei",
                    family = "Abe",
                    role = c("aut", "cre"),
                    email = "mail@recyclebin.jp")
as necessary.
Found the following HTML validation problems:
naturalfactor.html:58:1 (naturalfactor.Rd:16): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘activate.Rd’
Maintainer: ‘Hiroto Katsumata <hrt.katsumata@gmail.com>’

The Description field contains
  <arXiv:2005.10998>, which improves the inverse probability weighting by
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Richard Wen <rrwen.dev@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Malika Charrad <malika.charrad.1@ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Malika",
                      family = "Charrad",
                      role = c("aut", "cre"),
                      email = "malika.charrad.1@ulaval.ca"),
               person(given = "Nadia",
                      family = "Ghazzali",
                      role = "aut"),
               person(given = "Veronique",
                      family = "Boiteau",
                      role = "aut"),
               person(given = "Azam",
                      family = "Niknafs",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NbClust.Rd:50: Lost braces; missing escapes or markup?
    50 |       \item \bold{Average} : The distance \eqn{D_{ij}}{D_ij} between two clusters \eqn{C_{i}}{C_i} and \eqn{C_{j}}{C_j} is the mean of the distances between the pair of points {x} and {y}, where \eqn{x \in C_{i}, y \in C_{j}}{x in C_i, y in C_j}.
       |                                                                                                                                                                                 ^
checkRd: (-1) NbClust.Rd:50: Lost braces; missing escapes or markup?
    50 |       \item \bold{Average} : The distance \eqn{D_{ij}}{D_ij} between two clusters \eqn{C_{i}}{C_i} and \eqn{C_{j}}{C_j} is the mean of the distances between the pair of points {x} and {y}, where \eqn{x \in C_{i}, y \in C_{j}}{x in C_i, y in C_j}.
       |                                                                                                                                                                                         ^
Maintainer: ‘Philipp Angerer <philipp.angerer@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philipp",
                    family = "Angerer",
                    role = c("aut", "cre"),
                    email = "philipp.angerer@helmholtz-muenchen.de")
as necessary.
checkRd: (-1) nbconvert.Rd:49: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) nbconvert.Rd:50: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Feiming Chen <feimingchen@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feiming",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feimingchen@yahoo.com")
as necessary.
Maintainer: ‘Yanming Di <diy@stat.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanming",
                      family = "Di",
                      role = c("aut", "cre"),
                      email = "diy@stat.oregonstate.edu"),
               person(given = c("Daniel", "W"),
                      family = "Schafer",
                      role = "aut",
                      email = "schafer@stat.oregonstate.edu"),
               person(given = c("with", "contributions", "from", "Jason", "S"),
                      family = "Cumbie",
                      role = "aut",
                      email = "cumbiej@onid.orst.edu"),
               person(given = c("Jeff", "H"),
                      family = "Chang.",
                      role = "aut",
                      email = "changj@cgrb.oregonstate.edu"))
as necessary.
Found the following HTML validation problems:
plot.nb.data.html:52:1 (plot.nb.data.Rd:10): Warning: missing </ul> before </div>
plot.nb.dispersion.html:53:1 (plot.nb.dispersion.Rd:11): Warning: missing </ul> before </div>
print.nb.data.html:51:1 (print.nb.data.Rd:10): Warning: missing </ul> before </div>
print.nb.dispersion.html:52:1 (print.nb.dispersion.Rd:11): Warning: missing </ul> before </div>
print.nb.test.html:52:1 (print.nb.test.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Zeus Gracia-Tabuenca <zgtabuenca@comunidad.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Marina Gomtsyan <mgomtsian@gmail.com>’

The Description field contains
  <arXiv:2307.00929>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
check_confdiv.html:50:1 (check_confdiv.Rd:12): Warning: missing </ul> before </div>
check_contest.html:46:1 (check_contest.Rd:10): Warning: missing </ul> before </div>
check_logical.html:50:1 (check_logical.Rd:12): Warning: missing </ul> before </div>
check_match.html:54:1 (check_match.Rd:14): Warning: missing </ul> before </div>
check_sport.html:51:1 (check_sport.Rd:13): Warning: missing </ul> before </div>
check_team_id.html:46:1 (check_team_id.Rd:10): Warning: missing </ul> before </div>
check_team_name.html:50:1 (check_team_name.Rd:12): Warning: missing </ul> before </div>
check_year.html:51:1 (check_year.Rd:13): Warning: missing </ul> before </div>
get_team_info.html:46:1 (get_team_info.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Maintainer: ‘Jon Eastman <jonathan.eastman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Eastman",
                    role = c("aut", "cre"),
                    email = "jonathan.eastman@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
nc_dims.html:59:1 (nc_dims.Rd:21): Warning: missing </ul> before </div>
nc_sources.html:53:1 (nc_sources.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Nicholas Cooper <njcooper@gmx.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Cooper",
                    role = c("aut", "cre"),
                    email = "njcooper@gmx.co.uk")
as necessary.
Found the following HTML validation problems:
getHandSetIndices.html:59:1 (getHandSetIndices.Rd:17): Warning: missing </ul> before </div>
resolve.html:67:1 (resolve.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Dongshin Kim <dongshin.kim@live.com>’

The Description field contains
  Kim, D., Lee, S. and Kwon, S. (2018) <arXiv:1811.05061>, Lee, S., Kwon,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) ncpen.Rd:108: Lost braces; missing escapes or markup?
   108 |   \item{gamma}{extra shrinkage parameter for \code{classo} and {sridge} only.}
       |                                                                ^
checkRd: (-1) ncpen.reg.Rd:109: Lost braces; missing escapes or markup?
   109 |   \item{gamma}{extra shrinkage parameter for \code{classo} and {sridge} only.}
       |                                                                ^
Maintainer: ‘Gavin Melville <gavin.melville@dpi.nsw.gov.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "GJ",
                      family = "Melville",
                      role = "aut"),
               person(given = "Gavin",
                      family = "Melville",
                      role = "cre",
                      email = "gavin.melville@dpi.nsw.gov.au"))
as necessary.
Maintainer: ‘Bouchra R. Nasri <bouchra.nasri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Bouchra", "R."),
                    family = "Nasri",
                    role = c("aut", "cre"),
                    email = "bouchra.nasri@gmail.com")
as necessary.
Maintainer: ‘Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "J.", "Teran"),
                      family = "Hidalgo",
                      role = c("aut", "cre"),
                      email = "sebastianteranhidalgo@gmail.com"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"),
               person(given = "Ruofan",
                      family = "Bie",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: sebastianteranhidalgo@gmail.com
    From: man/ancut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/awncut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/ncut.Rd
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assign_fold.Rd’
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Found the following HTML validation problems:
consensusClusterNoPlots.html:94:1 (consensusClusterNoPlots.Rd:42): Warning: missing </ul> before </div>
Maintainer: ‘Edilberto Cepeda <ecepedac@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Edilberto",
                      family = "Cepeda-Cuervo",
                      role = "aut"),
               person(given = c("Maria", "Victoria"),
                      family = "Cifuentes-Amado",
                      role = "aut"),
               person(given = "Margarita",
                      family = "Marin",
                      role = "aut"),
               person(given = "Edilberto",
                      family = "Cepeda",
                      role = "cre",
                      email = "ecepedac@unal.edu.co"))
as necessary.
Maintainer: ‘Mamadou Yauck <yauck.mamadou@uqam.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mamadou",
                      family = "Yauck",
                      role = c("aut", "cre"),
                      email = "yauck.mamadou@uqam.ca"),
               person(given = c("Erica", "E.", "M."),
                      family = "Moodie",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
on_connection_opened.html:54:1 (on_connection_opened.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘functions.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘neon_cloud.R’
Found the following HTML validation problems:
neon_disconnect.html:46:1 (neon_disconnect.Rd:10): Warning: missing </ul> before </div>
neon_export_db.html:53:1 (neon_export_db.Rd:12): Warning: missing </ul> before </div>
neon_import_db.html:53:1 (neon_import_db.Rd:15): Warning: missing </ul> before </div>
neon_sites.html:59:1 (neon_sites.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Peifeng Ruan <pruan12@fudan.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peifeng",
                    family = "Ruan",
                    role = c("aut", "cre"),
                    email = "pruan12@fudan.edu.cn")
as necessary.
Maintainer: ‘Joseph Stachelek <stachel2@msu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Olanrewaju Akande <akandelanre13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Quanli",
                      family = "Wang",
                      role = "aut"),
               person(given = "Olanrewaju",
                      family = "Akande",
                      role = c("aut", "cre"),
                      email = "akandelanre13@gmail.com"),
               person(given = "Jingchen",
                      family = "Hu",
                      role = "aut"),
               person(given = "Jerry",
                      family = "Reiter",
                      role = "aut"),
               person(given = "Andres",
                      family = "Barrientos",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
SampleMissing.html:69:1 (SampleMissing.Rd:19): Warning: missing </ul> before </div>
initMissing.html:56:1 (initMissing.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.data.frame.predict.R’
checkRd: (-1) GSS.Rd:17: Lost braces
    17 | code{2016}.}
       |     ^
Maintainer: ‘Sean J Westwood <seanjw@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mike",
                      family = "Nowak",
                      role = "aut",
                      email = "michael.nowak@gmail.com"),
               person(given = "Solomon",
                      family = "Messing",
                      role = "aut",
                      email = "solomon.messing@gmail.com"),
               person(given = c("Sean", "J"),
                      family = "Westwood",
                      role = c("aut", "cre"),
                      email = "seanjw@stanford.edu"),
               person(given = "Dan",
                      family = "McFarland",
                      role = "aut",
                      email = "dmcfarla@stanford.edu"))
as necessary.
Maintainer: ‘Shuchismita Sarkar <ssarkar@bgsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuchismita",
                      family = "Sarkar",
                      role = c("aut", "cre"),
                      email = "ssarkar@bgsu.edu"),
               person(given = "Volodymyr",
                      family = "Melnykov",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/netClust.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Teague R. Henry <trhenry@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Teague", "R."),
                    family = "Henry",
                    role = c("aut", "cre"),
                    email = "trhenry@email.unc.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/netcontrol.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
nc_occ_probs_simple.html:55:1 (nc_occ_probs_simple.Rd:14): Warning: missing </ul> before </div>
nc_randomize_R.html:51:1 (nc_randomize_R.Rd:12): Warning: missing </ul> before </div>
nc_randomize_fast.html:50:1 (nc_randomize_fast.Rd:12): Warning: missing </ul> before </div>
nc_randomize_simple.html:51:1 (nc_randomize_simple.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Li-Pang Chen <lchen723@nccu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Li-Pang",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "lchen723@nccu.edu.tw")
as necessary.
Found the following significant warnings:
  infection.cpp:58:16: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  infection.cpp:162:16: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/netdiffuseR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.select.Rd: select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tianshi Lu <tianshi.lu@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianshi",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "tianshi.lu@utsouthwestern.edu")
as necessary.
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karline",
                      family = "Soetaert",
                      role = c("aut", "cre"),
                      email = "karline.soetaert@nioz.nl"),
               person(given = c("Julius", "Kipyegon"),
                      family = "Kones",
                      role = "aut",
                      email = "jkones@uonbi.ac.ke"),
               person(given = "Dick",
                      family = "van Oevelen",
                      role = "aut",
                      email = "dick.vanoevelen@nioz.nl"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
dot-bboxCoords.html:46:1 (dot-bboxCoords.Rd:10): Warning: missing </ul> before </div>
fargs.html:160:1 (fargs.Rd:85): Warning: missing </ul> before </div>
Maintainer: ‘Frank W. Marrs <frank.marrs@colostate.edu>’

The Description field contains
  <arXiv:1701.05530>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
coef.lmnet.html:51:1 (coef.lmnet.Rd:12): Warning: missing </ul> before </div>
model.matrix.lmnet.html:51:1 (model.matrix.lmnet.Rd:12): Warning: missing </ul> before </div>
plot.lmnet.html:51:1 (plot.lmnet.Rd:12): Warning: missing </ul> before </div>
print.lmnet.html:51:1 (print.lmnet.Rd:12): Warning: missing </ul> before </div>
print.summary.lmnet.html:51:1 (print.summary.lmnet.Rd:12): Warning: missing </ul> before </div>
print.summary.vnet.html:51:1 (print.summary.vnet.Rd:12): Warning: missing </ul> before </div>
print.vnet.html:51:1 (print.vnet.Rd:12): Warning: missing </ul> before </div>
summary.lmnet.html:51:1 (summary.lmnet.Rd:12): Warning: missing </ul> before </div>
summary.vnet.html:51:1 (summary.vnet.Rd:12): Warning: missing </ul> before </div>
vcov.lmnet.html:51:1 (vcov.lmnet.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  netStats.cpp:51:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  netStats.cpp:51:45: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  properties.cpp:132:18: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/NetRep.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following HTML validation problems:
common_params.html:92:1 (common_params.Rd:42): Warning: missing </ul> before </div>
orderModules_param.html:43:1 (orderModules_param.Rd:9): Warning: missing </ul> before </div>
plot_params.html:212:1 (plot_params.Rd:110): Warning: missing </ul> before </div>
simplify_param.html:42:1 (simplify_param.Rd:8): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LCC_Calc.html:62:1 (LCC_Calc.Rd:18): Warning: missing </ul> before </div>
checkRd: (-1) PVmodule.Rd:27: Lost braces; missing escapes or markup?
    27 | In the resulting netSEM model, time was used as a proxy for damp heat exposure stress (S) variable and $P_{max}$ (maximum power generated by the modules) was used as the performance level response ($R$) variable, several mechanistic variables ($M$) were obtained through chemical evaluation methods, including FTIR and TGA  on EVA encapsulant. 
       |                                                                                                           ^
checkRd: (-1) netSEMp1.Rd:55: Lost braces
    55 | For example, in the quadratic functional form y ~ b0 + b1x + b2x^2, the three P-values correspond two those of \\hat{b0}, \\hat{b1} and \\hat{b2}, respectively. 
       |                                                                                                                     ^
checkRd: (-1) netSEMp1.Rd:55: Lost braces
    55 | For example, in the quadratic functional form y ~ b0 + b1x + b2x^2, the three P-values correspond two those of \\hat{b0}, \\hat{b1} and \\hat{b2}, respectively. 
       |                                                                                                                                ^
checkRd: (-1) netSEMp1.Rd:55: Lost braces
    55 | For example, in the quadratic functional form y ~ b0 + b1x + b2x^2, the three P-values correspond two those of \\hat{b0}, \\hat{b1} and \\hat{b2}, respectively. 
       |                                                                                                                                              ^
Maintainer: ‘Christian Brownlees <christian.brownlees@upf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Brownlees",
                    role = c("aut", "cre"),
                    email = "christian.brownlees@upf.edu")
as necessary.
'library' or 'require' call not declared from: ‘MASS’
Maintainer: ‘Arash A. Amini <aaamini@ucla.edu>’

The Description field contains
  <doi:10.1214/16-AOS1457> Zhang and Amini (2020) <arXiv:2012.15047> Le
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) spec_clust.Rd:33: Lost braces; missing escapes or markup?
    33 | A label vector of size n x 1 with elements in {1,2,...,K}
       |                                               ^
Found the following HTML validation problems:
ns_req_auth.html:70:1 (ns_req_auth.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Minghui Wang <m.h.wang@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "m.h.wang@live.com"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) rc.plot.ideogram.Rd:20: Lost braces; missing escapes or markup?
    20 |  \item{las}{numeric in {0,1,2,3}; the style of chromosome labels. 0, always parallel to the track [default]; 1, always horizontal; 2, always perpendicular to the track; 3, always vertical.}
       |                        ^
Maintainer: ‘Jong Hee Park <jongheepark@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jong", "Hee"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "jongheepark@snu.ac.kr"),
               person(given = "Yunkyu",
                      family = "Sohn",
                      role = "aut"))
as necessary.
checkRd: (-1) NetworkChange.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) NetworkChangeRobust.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) NetworkStatic.Rd:142: Escaped LaTeX specials: \&
Found the following HTML validation problems:
plot.NCT.html:58:1 (plot.NCT.Rd:17): Warning: missing </ul> before </div>
summary.NCT.html:51:1 (summary.NCT.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_treenetdf.Node.html:52:1 (as_treenetdf.Node.Rd:13): Warning: missing </ul> before </div>
as_treenetdf.data.frame.html:79:1 (as_treenetdf.data.frame.Rd:32): Warning: missing </ul> before </div>
as_treenetdf.hclust.html:52:1 (as_treenetdf.hclust.Rd:13): Warning: missing </ul> before </div>
as_treenetdf.igraph.html:57:1 (as_treenetdf.igraph.Rd:16): Warning: missing </ul> before </div>
as_treenetdf.list.html:62:1 (as_treenetdf.list.Rd:19): Warning: missing </ul> before </div>
as_treenetdf.phylo.html:52:1 (as_treenetdf.phylo.Rd:13): Warning: missing </ul> before </div>
as_treenetdf.tbl_graph.html:52:1 (as_treenetdf.tbl_graph.Rd:13): Warning: missing </ul> before </div>
networkD3-shiny.html:92:1 (networkD3-shiny.Rd:63): Warning: missing </ul> before </div>
pkg_installed.html:46:1 (pkg_installed.Rd:10): Warning: missing </ul> before </div>
saveNetwork.html:59:1 (saveNetwork.Rd:17): Warning: missing </ul> before </div>
treeNetwork-shiny.html:68:1 (treeNetwork-shiny.Rd:25): Warning: missing </ul> before </div>
treeNetwork.html:102:1 (treeNetwork.Rd:46): Warning: missing </ul> before </div>
checkRd: (-1) nodeLogic.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:46: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘map.png’ ‘maze.html’
Maintainer: ‘Fridolin Linder <fridolin.linder@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘policies.Rd’:
    https://doi.org/10.7910/DVN/CVYSR7
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
get.inducedSubgraph.networkLite.html:47:1 (get.inducedSubgraph.networkLite.Rd:10): Warning: missing </ul> before </div>
permute.vertexIDs.networkLite.html:47:1 (permute.vertexIDs.networkLite.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.network.html:94:1 (as.data.frame.network.Rd:42): Warning: missing </ul> before </div>
Maintainer: ‘Ian Laga <ilaga25@gmail.com>’

The Description field contains
  Niu, X (2021) <arXiv:2109.10204>, Zheng, T., Salganik, M. J., and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
coerce_to_adjacency.html:51:1 (coerce_to_adjacency.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) networktree.Rd:56: Lost braces; missing escapes or markup?
    56 | with a matrix response {y}. \code{x1} and \code{x2} are used as
       |                        ^
Found the following HTML validation problems:
cortrafo.html:70:1 (cortrafo.Rd:19): Warning: missing </ul> before </div>
plot.networktree.html:98:1 (plot.networktree.Rd:44): Warning: missing </ul> before </div>
predict.networktree.html:61:1 (predict.networktree.Rd:18): Warning: missing </ul> before </div>
print.networktree.html:60:1 (print.networktree.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
bias_lines.html:118:1 (bias_lines.Rd:54): Warning: missing </ul> before </div>
bias_points.html:93:1 (bias_points.Rd:39): Warning: missing </ul> before </div>
get_ys.html:58:1 (get_ys.Rd:16): Warning: missing </ul> before </div>
layer_lines.html:143:1 (layer_lines.Rd:69): Warning: missing </ul> before </div>
layer_points.html:113:1 (layer_points.Rd:51): Warning: missing </ul> before </div>
Maintainer: ‘Bradley Buchsbaum <brad.buchsbaum@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bradley", "R."),
                      family = "Buchsbaum",
                      role = "aut"),
               person(given = "Bradley",
                      family = "Buchsbaum",
                      role = "cre",
                      email = "brad.buchsbaum@gmail.com"))
as necessary.
Maintainer: ‘Surya Tokdar <surya.tokdar@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Surya",
                    family = "Tokdar",
                    role = c("aut", "cre"),
                    email = "surya.tokdar@duke.edu")
as necessary.

The Description field contains
  may be found at <arXiv:1911.04387>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘visualizations.R’
Maintainer: ‘Saralees Nadarajah <Saralees.Nadarajah@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "saralees.nadarajah@manchester.ac.uk"),
               person(given = "Ricardo",
                      family = "Rocha",
                      role = "aut"))
as necessary.
Maintainer: ‘Ningning Xu <n.xu@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ningning",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "n.xu@lumc.nl")
as necessary.

The Description field contains
  (2021) <arXiv:2001.01541> for detailed description.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
stop_if_invalid_category.html:47:1 (stop_if_invalid_category.Rd:10): Warning: missing </ul> before </div>
stop_if_invalid_country.html:47:1 (stop_if_invalid_country.Rd:10): Warning: missing </ul> before </div>
stop_if_invalid_language.html:47:1 (stop_if_invalid_language.Rd:10): Warning: missing </ul> before </div>
stop_if_invalid_source.html:47:1 (stop_if_invalid_source.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_url.html:55:1 (check_url.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
afe.html:54:1 (afe.Rd:14): Warning: missing </ul> before </div>
as.coefficients_textmodel.html:48:1 (as.coefficients_textmodel.Rd:11): Warning: missing </ul> before </div>
as.statistics_textmodel.html:46:1 (as.statistics_textmodel.Rd:10): Warning: missing </ul> before </div>
as.summary.textmodel.html:46:1 (as.summary.textmodel.Rd:10): Warning: missing </ul> before </div>
coef.textmodel_newsmap.html:63:1 (coef.textmodel_newsmap.Rd:20): Warning: missing </ul> before </div>
predict.textmodel_newsmap.html:92:1 (predict.textmodel_newsmap.Rd:39): Warning: missing </ul> before </div>
print.coefficients_textmodel.html:58:1 (print.coefficients_textmodel.Rd:16): Warning: missing </ul> before </div>
print.statistics_textmodel.html:56:1 (print.statistics_textmodel.Rd:15): Warning: missing </ul> before </div>
print.summary.textmodel.html:56:1 (print.summary.textmodel.Rd:15): Warning: missing </ul> before </div>
summary.textmodel_newsmap_accuracy.html:53:1 (summary.textmodel_newsmap_accuracy.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
news.html:124:1 (news.Rd:72): Warning: <h5> anchor "Usage" already defined
news.html:140:1 (news.Rd:82): Warning: <h5> anchor "Usage" already defined
news.html:146:1 (news.Rd:86): Warning: <h5> anchor "Returns" already defined
news.html:163:1 (news.Rd:95): Warning: <h5> anchor "Usage" already defined
news.html:169:1 (news.Rd:99): Warning: <h5> anchor "Arguments" already defined
news.html:195:1 (news.Rd:115): Warning: <h5> anchor "Usage" already defined
news.html:201:1 (news.Rd:119): Warning: <h5> anchor "Arguments" already defined
news.html:224:1 (news.Rd:132): Warning: <h5> anchor "Usage" already defined
news.html:230:1 (news.Rd:136): Warning: <h5> anchor "Arguments" already defined
news.html:253:1 (news.Rd:149): Warning: <h5> anchor "Usage" already defined
news.html:259:1 (news.Rd:153): Warning: <h5> anchor "Arguments" already defined
news.html:282:1 (news.Rd:166): Warning: <h5> anchor "Usage" already defined
news.html:288:1 (news.Rd:170): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Carlos Martinez <cmmm7031@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr", "Carlos", "Miguel", "Martinez"),
                      family = "Manrique",
                      role = "aut"),
               person(given = "Carlos",
                      family = "Martinez",
                      role = "cre",
                      email = "cmmm7031@gmail.com"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/nextGenShinyApps
which should likely be
  https://github.com/oobianom/nextGenShinyApps/issues
instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.

The Description field contains
  Robotham & Howlett (2018) <arXiv:1805.09550>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
NGBforecast.html:155:1 (NGBforecast.Rd:125): Warning: <h5> anchor "Usage" already defined
NGBforecast.html:171:1 (NGBforecast.Rd:139): Warning: <h5> anchor "Arguments" already defined
NGBforecast.html:211:1 (NGBforecast.Rd:173): Warning: <h5> anchor "Returns" already defined
NGBforecast.html:228:1 (NGBforecast.Rd:182): Warning: <h5> anchor "Usage" already defined
NGBforecast.html:234:1 (NGBforecast.Rd:186): Warning: <h5> anchor "Arguments" already defined
NGBforecast.html:266:1 (NGBforecast.Rd:208): Warning: <h5> anchor "Usage" already defined
NGBforecast.html:272:1 (NGBforecast.Rd:212): Warning: <h5> anchor "Returns" already defined
NGBforecast.html:289:1 (NGBforecast.Rd:221): Warning: <h5> anchor "Usage" already defined
NGBforecast.html:295:1 (NGBforecast.Rd:225): Warning: <h5> anchor "Returns" already defined
NGBforecast.html:312:1 (NGBforecast.Rd:234): Warning: <h5> anchor "Usage" already defined
NGBforecast.html:318:1 (NGBforecast.Rd:238): Warning: <h5> anchor "Arguments" already defined
NGBforecast.html:333:1 (NGBforecast.Rd:247): Warning: <h5> anchor "Returns" already defined
NGBforecast.html:350:1 (NGBforecast.Rd:256): Warning: <h5> anchor "Usage" already defined
NGBforecast.html:356:1 (NGBforecast.Rd:260): Warning: <h5> anchor "Arguments" already defined
NGBforecastCV.html:137:1 (NGBforecastCV.Rd:139): Warning: <h5> anchor "Usage" already defined
NGBforecastCV.html:153:1 (NGBforecastCV.Rd:153): Warning: <h5> anchor "Arguments" already defined
NGBforecastCV.html:195:1 (NGBforecastCV.Rd:189): Warning: <h5> anchor "Returns" already defined
NGBforecastCV.html:212:1 (NGBforecastCV.Rd:198): Warning: <h5> anchor "Usage" already defined
NGBforecastCV.html:218:1 (NGBforecastCV.Rd:202): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
ngrami.html:54:1 (ngrami.Rd:14): Warning: missing </ul> before </div>
ngramw.html:55:1 (ngramw.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Chung-hong Chan <chainsawtiney@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chung-hong",
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "chainsawtiney@gmail.com")
as necessary.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "drjphughesjr@gmail.com"),
               person(given = "Xiaohui",
                      family = "Cui",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Bayesian spatial filtering model of Hughes (2017) <arXiv:1706.04651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Randall Pruim <rpruim@calvin.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Randall",
                    family = "Pruim",
                    role = c("aut", "cre"),
                    email = "rpruim@calvin.edu")
as necessary.

The Description field contains
  http://www.cdc.gov/nchs/nhanes.htm for details.
Please enclose URLs in angle brackets (<...>).
checkRd: (-1) NHANES.Rd:278: Lost braces
   278 | \code{AgeFirstMarij}{Age participant first tried marijuana. Reported for participants aged 18 to 59 years.}
       |                     ^
Maintainer: ‘D. Lukke Sweet <dls229@zips.uakron.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("D.", "Lukke"),
                    family = "Sweet",
                    role = c("aut", "cre"),
                    email = "dls229@zips.uakron.edu")
as necessary.
Maintainer: ‘Ana C. Cebrian <acebrian@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ana", "C."),
                    family = "Cebrian",
                    role = c("aut", "cre"),
                    email = "acebrian@unizar.es")
as necessary.
checkRd: (-1) graphresU.fun.Rd:72: Escaped LaTeX specials: \&
Found the following HTML validation problems:
Lambda_exp_form.html:60:1 (Lambda_exp_form.Rd:17): Warning: missing </ul> before </div>
Lambda_inv_exp_form.html:58:1 (Lambda_inv_exp_form.Rd:16): Warning: missing </ul> before </div>
Lambda_inv_linear_form.html:58:1 (Lambda_inv_linear_form.Rd:16): Warning: missing </ul> before </div>
Lambda_linear_form.html:60:1 (Lambda_linear_form.Rd:17): Warning: missing </ul> before </div>
vdraw_intensity_step_regular_forcezt.html:116:1 (vdraw_intensity_step_regular_forcezt.Rd:57): Warning: missing </ul> before </div>
vztdraw_intensity_step_regular.html:102:1 (vztdraw_intensity_step_regular.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Giovanni Tramonti <giovanni.tramonti@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giovanni",
                    family = "Tramonti",
                    role = c("aut", "cre"),
                    email = "giovanni.tramonti@ed.ac.uk")
as necessary.
Found the following HTML validation problems:
geom_ptd_icon.html:63:1 (geom_ptd_icon.Rd:21): Warning: missing </ul> before </div>
checkRd: (-1) bootstrap_param_est.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootstrap_param_est.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootstrap_param_est.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_data.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_data.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_data.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "geyer@umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "geyer@umn.edu"))
as necessary.
Maintainer: ‘Cai-qing YANG <yangcq_ivy@163.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/Yangcq-Ivy/NicheBarcoding
which should likely be
  https://github.com/Yangcq-Ivy/NicheBarcoding/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘create_comparison.R’ ‘create_comparisons.Rd’
    ‘extract_group_metrics.R’ ‘extract_group_metrics.Rd’
    ‘extract_layman.R’ ‘extract_layman.Rd’ ‘extract_mu.R’ ‘extract_mu.Rd’
    ‘extract_niche_size.R’ ‘extract_overlap.R’ ‘extract_sigma.R’
    ‘extract_similarities.R’ ‘extract_similarities.Rd’ ‘niche_ellipse.R’
Maintainer: ‘Timothy Koscik <timothy-koscik@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "R."),
                      family = "Koscik",
                      role = c("aut", "cre", "cph")),
               person(given = "Timothy",
                      family = "Koscik",
                      role = "cre",
                      email = "timothy-koscik@uiowa.edu"))
as necessary.
Maintainer: ‘Max Hughes-Brandl <gordonmax@hotmail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Hughes-Brandl",
                    role = c("aut", "cre"),
                    email = "gordonmax@hotmail.de")
as necessary.
Maintainer: ‘Natalya Pya Arnqvist <nat.pya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalya", "Pya"),
                      family = "Arnqvist",
                      role = c("aut", "cre"),
                      email = "nat.pya@gmail.com"),
               person(given = "Vassilly",
                      family = "Voinov",
                      role = "aut"),
               person(given = "Rashid",
                      family = "Makarov",
                      role = "aut"),
               person(given = "Yevgeniy",
                      family = "Voinov",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
scale_color_nima.html:46:1 (scale_color_nima.Rd:10): Warning: missing </ul> before </div>
scale_fill_nima.html:46:1 (scale_fill_nima.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘David Pleydell <david.pleydell@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Pleydell",
                    role = c("aut", "cre", "cph"),
                    email = "david.pleydell@inrae.fr",
                    comment = c("Package developer", ORCID = "0000-0002-6450-1475"))
as necessary.
Found the following HTML validation problems:
buildAuxiliaryFilter.html:46:1 (buildAuxiliaryFilter.Rd:10): Warning: missing </ul> before </div>
buildBootstrapFilter.html:46:1 (buildBootstrapFilter.Rd:10): Warning: missing </ul> before </div>
buildEnsembleKF.html:46:1 (buildEnsembleKF.Rd:10): Warning: missing </ul> before </div>
buildIteratedFilter2.html:46:1 (buildIteratedFilter2.Rd:10): Warning: missing </ul> before </div>
buildLiuWestFilter.html:46:1 (buildLiuWestFilter.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Lennart Johansson <l.johansson@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "de Weerd",
                      role = "aut"),
               person(given = "Lennart",
                      family = "Johansson",
                      role = c("aut", "cre"),
                      email = "l.johansson@umcg.nl"))
as necessary.
Found the following HTML validation problems:
chrfractions.html:46:1 (chrfractions.Rd:10): Warning: missing </ul> before </div>
getcontrolchromosomes.html:51:1 (getcontrolchromosomes.Rd:13): Warning: missing </ul> before </div>
getfractionscontrolgroup.html:47:1 (getfractionscontrolgroup.Rd:11): Warning: missing </ul> before </div>
getreadscontrolgroup.html:46:1 (getreadscontrolgroup.Rd:10): Warning: missing </ul> before </div>
retrieve_fractions_of_interest.html:56:1 (retrieve_fractions_of_interest.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Yikai Wang <johnzon.wyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yikai",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "johnzon.wyk@gmail.com"),
               person(given = "Xiao",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Douglas Bates <bates@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("original", "from", "National", "Institutes", "for"),
                      family = "Standards",
                      role = "aut"),
               person(given = c("Technology", "http://www.itl.nist.gov/div898/strd/nls/nls_main.shtml", "R", "port", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu",
                      comment = "NIST"),
               person(given = "Douglas",
                      family = "Bates",
                      role = "cre",
                      email = "bates@stat.wisc.edu"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Troy D. Hill <Hill.Troy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Troy", "D."),
                      family = "Hill",
                      role = c("aut", "cre"),
                      email = "hill.troy@gmail.com"),
               person(given = c("Nathalie", "R."),
                      family = "Sommer",
                      role = "aut"),
               person(given = c("Caroline", "R."),
                      family = "Kanaskie",
                      role = "aut"),
               person(given = c("Emily", "A."),
                      family = "Santos",
                      role = "aut"),
               person(given = c("Autumn", "J."),
                      family = "Oczkowski",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CN_mass_data.Rd’:
    \keyword{data,}
    \keyword{isotopes,}
  File ‘allometry.Rd’:
    \keyword{data,}
  File ‘dea.Rd’:
    \keyword{data,}
    \keyword{denitrification,}
  File ‘stemHeights.Rd’:
    \keyword{NAPP,}
    \keyword{biomass,}
    \keyword{data,}
    \keyword{height,}

Found the following URLs which should use \doi (with the DOI name only):
  File ‘CN_mass_data.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘allometry.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘bCM.Rd’:
    https://doi.org/10.1002/ecy.1600
  File ‘dea.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘stemHeights.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
Found the following HTML validation problems:
findPowerR.html:57:1 (findPowerR.Rd:20): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_model_params.R’ ‘level_from_quantiles.R’ ‘make_request.R’
    ‘nixtla_client_cross_validation.R’ ‘nixtla_client_detect_anomalies.R’
    ‘nixtla_client_forecast.R’ ‘nixtla_client_historic.R’
    ‘nixtla_client_plot.R’ ‘nixtla_validate_api_key.R’
    ‘validate_exogenous.R’
Maintainer: ‘Xianyan Chen <xychen@uga.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xianyan",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "xychen@uga.edu"),
               person(given = "Xiangrong",
                      family = "Yin",
                      role = "aut",
                      email = "yinxiangrong@uky.edu"))
as necessary.
Found the following HTML validation problems:
print.pamrML.html:51:1 (print.pamrML.Rd:12): Warning: missing </ul> before </div>
print.summary.mcrPlot.html:56:1 (print.summary.mcrPlot.Rd:15): Warning: missing </ul> before </div>
summary.mcrPlot.html:52:1 (summary.mcrPlot.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Berend Hasselman <bhh@xs4all.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Berend",
                    family = "Hasselman",
                    role = c("aut", "cre"),
                    email = "bhh@xs4all.nl")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
params.html:107:1 (params.Rd:42): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)’
  Authors@R: ‘José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (ROR: <https://ror.org/02zz1nj61>)’
Found the following HTML validation problems:
gls-internal.html:70:1 (gls-internal.Rd:28): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-nlmixrNlsFunVal.html:48:1 (dot-nlmixrNlsFunVal.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
knit_print.nlmixr2FitCore.html:60:1 (knit_print.nlmixr2FitCore.Rd:18): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘addBaseline1exp.Rd’ ‘addBaselineConst.Rd’ ‘addBaselineExp.Rd’
    ‘addBaselineLin.Rd’ ‘addCmtProp.Rd’ ‘addDepot.Rd’ ‘addDirectLin.Rd’
    ‘addEffectCmtLin.Rd’ ‘addEta.Rd’ ‘addIndirect.Rd’ ‘addIndirectLin.Rd’
    ‘addLogEstimates.Rd’ ‘addResErr.Rd’ ‘addTransit.Rd’
    ‘addWeibullAbs.Rd’ ‘convertEmax.Rd’ ‘convertEmaxHill.Rd’
    ‘convertKinR0.Rd’ ‘convertLogLin.Rd’ ‘convertMM.Rd’ ‘convertQuad.Rd’
    ‘fakeCc.Rd’ ‘pkTrans.Rd’ ‘removeDepot.Rd’ ‘removeLinesAndInis.Rd’
    ‘removeTransit.Rd’
Found the following HTML validation problems:
nlmixr2deps.html:47:1 (nlmixr2deps.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Carme Font <carme.font.moragon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carme",
                    family = "Font",
                    role = c("aut", "cre"),
                    email = "carme.font.moragon@gmail.com")
as necessary.
Maintainer: ‘Tianwei Yu<yutianwei@cuhk.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianwei",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "yutianwei@cuhk.edu.cn"),
               person(given = "Haodong",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘David Benkeser <benkeser@emory.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘wine.Rd’:
    https://doi.org/10.1016/j.dss.2009.05.016
checkRd: (-1) dot-make_long_data.Rd:44: Lost braces; missing escapes or markup?
    44 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)),
       |                                                                ^
checkRd: (-1) dot-make_long_data_nested_cv.Rd:49: Lost braces; missing escapes or markup?
    49 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)),
       |                                                                ^
Found the following HTML validation problems:
dot-get_cv_estim.html:62:1 (dot-get_cv_estim.Rd:18): Warning: missing </ul> before </div>
dot-get_density.html:93:1 (dot-get_density.Rd:39): Warning: missing </ul> before </div>
dot-get_nested_cv_quantile.html:64:1 (dot-get_nested_cv_quantile.Rd:19): Warning: missing </ul> before </div>
dot-get_one_fold.html:62:1 (dot-get_one_fold.Rd:18): Warning: missing </ul> before </div>
dot-get_quantile.html:56:1 (dot-get_quantile.Rd:15): Warning: missing </ul> before </div>
dot-make_targeting_data.html:78:1 (dot-make_targeting_data.Rd:30): Warning: missing </ul> before </div>
dot-process_input.html:79:1 (dot-process_input.Rd:33): Warning: missing </ul> before </div>
print.cvauc.html:59:1 (print.cvauc.Rd:16): Warning: missing </ul> before </div>
print.scrnp.html:59:1 (print.scrnp.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Jin Liu <Veronica.Liu0206@gmail.com>’

The Description field contains
  <arXiv:2302.03237v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
ModelSummary-myMxOutput-method.html:47:1 (ModelSummary-myMxOutput-method.Rd:10): Warning: missing </ul> before </div>
ModelSummary.html:46:1 (ModelSummary.Rd:10): Warning: missing </ul> before </div>
printTable-FSOutput-method.html:47:1 (printTable-FSOutput-method.Rd:10): Warning: missing </ul> before </div>
printTable-KappaOutput-method.html:47:1 (printTable-KappaOutput-method.Rd:10): Warning: missing </ul> before </div>
printTable-StatsOutput-method.html:47:1 (printTable-StatsOutput-method.Rd:10): Warning: missing </ul> before </div>
printTable-myMxOutput-method.html:47:1 (printTable-myMxOutput-method.Rd:10): Warning: missing </ul> before </div>
printTable-postOutput-method.html:47:1 (printTable-postOutput-method.Rd:10): Warning: missing </ul> before </div>
printTable.html:46:1 (printTable.Rd:10): Warning: missing </ul> before </div>
show-figOutput-method.html:47:1 (show-figOutput-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
util_call_nl.html:59:1 (util_call_nl.Rd:17): Warning: missing </ul> before </div>
util_cleanup.html:68:1 (util_cleanup.Rd:24): Warning: missing </ul> before </div>
util_create_agentset_reporter.html:50:1 (util_create_agentset_reporter.Rd:12): Warning: missing </ul> before </div>
util_create_lhs.html:55:1 (util_create_lhs.Rd:15): Warning: missing </ul> before </div>
util_create_sim_XML.html:60:1 (util_create_sim_XML.Rd:17): Warning: missing </ul> before </div>
util_eval_constants.html:48:1 (util_eval_constants.Rd:12): Warning: missing </ul> before </div>
util_gather_results.html:58:1 (util_gather_results.Rd:16): Warning: missing </ul> before </div>
util_generate_seeds.html:46:1 (util_generate_seeds.Rd:10): Warning: missing </ul> before </div>
util_read_write_batch.html:46:1 (util_read_write_batch.Rd:10): Warning: missing </ul> before </div>
util_run_nl_dyn_ABCmcmc.html:68:1 (util_run_nl_dyn_ABCmcmc.Rd:24): Warning: missing </ul> before </div>
util_run_nl_dyn_GenAlg.html:62:1 (util_run_nl_dyn_GenAlg.Rd:18): Warning: missing </ul> before </div>
util_run_nl_dyn_GenAlg_fn.html:82:1 (util_run_nl_dyn_GenAlg_fn.Rd:33): Warning: missing </ul> before </div>
util_run_nl_dyn_GenSA.html:62:1 (util_run_nl_dyn_GenSA.Rd:18): Warning: missing </ul> before </div>
util_run_nl_dyn_GenSA_fn.html:78:1 (util_run_nl_dyn_GenSA_fn.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘G. Grothendieck <ggrothendieck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "G.",
                      family = "Grothendieck",
                      role = c("aut", "cre"),
                      email = "ggrothendieck@gmail.com"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "aut",
                      comment = "nls"))
as necessary.
checkRd: (-1) anova.Rd:19: Lost braces
    19 |   Returns an object of class code{anova}.  These objects represent
       |                                  ^
Maintainer: ‘Rafael Benitez <rabesua@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mariano",
                      family = "Rodriguez-Arias",
                      role = "aut",
                      email = "arias@unex.es"),
               person(given = c("Juan", "Antonio"),
                      family = "Fernandez",
                      role = "aut",
                      email = "jfernandck@alumnos.unex.es"),
               person(given = "Javier",
                      family = "Cabello",
                      role = "aut",
                      email = "coco@unex.es"),
               person(given = "Rafael",
                      family = "Benitez",
                      role = c("aut", "cre"),
                      email = "rabesua@uv.es"))
as necessary.
Found the following HTML validation problems:
print.summary.nlstac.html:64:1 (print.summary.nlstac.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
GetDetails-methods.html:46:1 (GetDetails-methods.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_phylogenies.html:49:1 (check_phylogenies.Rd:13): Warning: missing </ul> before </div>
check_step_type.html:57:1 (check_step_type.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Oleh Komashko <oleg_komashko@ukr.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oleh",
                    family = "Komashko",
                    role = c("aut", "cre"),
                    email = "oleg_komashko@ukr.net")
as necessary.
Maintainer: ‘Burak Kuersad Guenhan <burakgunhan@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nmarank.Rd: netmeta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David Phillippo <david.phillippo@bristol.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
addBlocks.html:50:1 (addBlocks.Rd:12): Warning: missing </ul> before </div>
count_ij.html:46:1 (count_ij.Rd:10): Warning: missing </ul> before </div>
dcastSe.html:60:1 (dcastSe.Rd:18): Warning: missing </ul> before </div>
getLines.html:67:1 (getLines.Rd:26): Warning: missing </ul> before </div>
initsToExt.html:46:1 (initsToExt.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Suhai (Timothy) Liu <tim.liu@alumni.duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suhai",
                      family = "Liu",
                      role = "aut",
                      comment = "Timothy"),
               person(given = "Suhai",
                      family = "Liu",
                      role = "cre",
                      email = "tim.liu@alumni.duke.edu",
                      comment = "Timothy"))
as necessary.
Found the following HTML validation problems:
NMreadSimModTab.html:116:1 (NMreadSimModTab.Rd:66): Warning: missing </ul> before </div>
NMreadSimModTabOne.html:109:1 (NMreadSimModTabOne.Rd:61): Warning: missing </ul> before </div>
NMreadSimRes.html:46:1 (NMreadSimRes.Rd:10): Warning: missing </ul> before </div>
NMrunLin.html:58:1 (NMrunLin.Rd:22): Warning: missing </ul> before </div>
NMsimCheckMod.html:53:1 (NMsimCheckMod.Rd:14): Warning: missing </ul> before </div>
NMupdateFn.html:86:1 (NMupdateFn.Rd:36): Warning: missing </ul> before </div>
addBlocks.html:50:1 (addBlocks.Rd:12): Warning: missing </ul> before </div>
addParameter.html:50:1 (addParameter.Rd:12): Warning: missing </ul> before </div>
checkTimes.html:79:1 (checkTimes.Rd:34): Warning: missing </ul> before </div>
count_ij.html:46:1 (count_ij.Rd:10): Warning: missing </ul> before </div>
dcastSe.html:60:1 (dcastSe.Rd:18): Warning: missing </ul> before </div>
nameMultipleFiles.html:55:1 (nameMultipleFiles.Rd:15): Warning: missing </ul> before </div>
pasteFuns.html:57:1 (pasteFuns.Rd:18): Warning: missing </ul> before </div>
prioritizePaths.html:54:1 (prioritizePaths.Rd:14): Warning: missing </ul> before </div>
typicalize.html:61:1 (typicalize.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
NMSlib.html:73:1 (NMSlib.Rd:96): Warning: <h3> anchor "Methods" already defined
NMSlib.html:166:1 (NMSlib.Rd:158): Warning: <h5> anchor "Usage" already defined
NMSlib.html:172:1 (NMSlib.Rd:162): Warning: <h5> anchor "Arguments" already defined
NMSlib.html:197:1 (NMSlib.Rd:178): Warning: <h5> anchor "Usage" already defined
NMSlib.html:203:1 (NMSlib.Rd:182): Warning: <h5> anchor "Arguments" already defined
NMSlib.html:228:1 (NMSlib.Rd:198): Warning: <h5> anchor "Usage" already defined
NMSlib.html:234:1 (NMSlib.Rd:202): Warning: <h5> anchor "Arguments" already defined
NMSlib.html:259:1 (NMSlib.Rd:217): Warning: <h5> anchor "Usage" already defined
NMSlib.html:265:1 (NMSlib.Rd:221): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Joseph Lipoff <josephlipoff@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "V."),
                      family = "Lipoff",
                      role = "aut"),
               person(given = "Will",
                      family = "Pauls",
                      role = "aut"),
               person(given = c("Kaylin", "C."),
                      family = "Dobbs",
                      role = "aut"),
               person(given = c("Jordan", "L."),
                      family = "Jensen",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Woods",
                      role = "aut"),
               person(given = c("Evan", "T."),
                      family = "Johnson",
                      role = "aut"),
               person(given = c("Benjamin", "F."),
                      family = "Timson",
                      role = "aut"),
               person(given = c("Scott", "D.", "Zimmerman,and", "Paul"),
                      family = "Plummer",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Lipoff",
                      role = "cre",
                      email = "josephlipoff@msn.com"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Specified C++14: please drop specification unless essential
Found the following HTML validation problems:
clearNN.html:66:1 (clearNN.Rd:27): Warning: missing </ul> before </div>
timeR.html:223:1 (timeR.Rd:151): Warning: <h5> anchor "Usage" already defined
timeR.html:237:1 (timeR.Rd:160): Warning: <h5> anchor "Usage" already defined
timeR.html:253:1 (timeR.Rd:171): Warning: <h5> anchor "Usage" already defined
timeR.html:267:1 (timeR.Rd:180): Warning: <h5> anchor "Usage" already defined
timeR.html:281:1 (timeR.Rd:189): Warning: <h5> anchor "Usage" already defined
timeR.html:295:1 (timeR.Rd:198): Warning: <h5> anchor "Usage" already defined
timeR.html:309:1 (timeR.Rd:207): Warning: <h5> anchor "Usage" already defined
timeR.html:323:1 (timeR.Rd:216): Warning: <h5> anchor "Usage" already defined
timeR.html:337:1 (timeR.Rd:225): Warning: <h5> anchor "Usage" already defined
timeR.html:351:1 (timeR.Rd:234): Warning: <h5> anchor "Usage" already defined
timeR.html:365:1 (timeR.Rd:243): Warning: <h5> anchor "Usage" already defined
timeR.html:379:1 (timeR.Rd:252): Warning: <h5> anchor "Usage" already defined
timeR.html:393:1 (timeR.Rd:261): Warning: <h5> anchor "Usage" already defined
timeR.html:407:1 (timeR.Rd:270): Warning: <h5> anchor "Usage" already defined
timeR.html:421:1 (timeR.Rd:279): Warning: <h5> anchor "Usage" already defined
timeR.html:437:1 (timeR.Rd:289): Warning: <h5> anchor "Usage" already defined
Found the following HTML validation problems:
fix_df.html:46:1 (fix_df.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.
Maintainer: ‘Baidya Nath Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Baidya", "Nath"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘Chiu-Hsieh Hsu <pablo1639@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Ran",
                      role = "aut"),
               person(given = "Chiu-Hsieh",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "pablo1639@gmail.com"),
               person(given = "Mandi",
                      family = "Yu",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
nnmi.html:50:1 (nnmi.Rd:12): Warning: missing </ul> before </div>
print.nnmi.html:51:1 (print.nnmi.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Elvan Ceyhan <elvanceyhan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elvan",
                    family = "Ceyhan",
                    role = c("aut", "cre"),
                    email = "elvanceyhan@gmail.com")
as necessary.
Maintainer: ‘Roger Day <day01@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roger",
                    family = "Day",
                    role = c("aut", "cre"),
                    email = "day01@pitt.edu")
as necessary.
checkRd: (-1) ROCplots.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:40: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
binom.confint.html:58:1 (binom.confint.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Zhao Yang <yangz98@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhao",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yangz98@connect.hku.hk")
as necessary.
Found the following HTML validation problems:
Ark.html:252:1 (Ark.Rd:138): Warning: missing </ul> before </div>
Ark.html:127:1 (Ark.Rd:65): Warning: <h5> anchor "Usage" already defined
Ark.html:133:1 (Ark.Rd:69): Warning: <h5> anchor "Arguments" already defined
Ark.html:151:1 (Ark.Rd:81): Warning: <h5> anchor "Returns" already defined
Ark.html:168:1 (Ark.Rd:90): Warning: <h5> anchor "Usage" already defined
Ark.html:174:1 (Ark.Rd:94): Warning: <h5> anchor "Arguments" already defined
Ark.html:197:1 (Ark.Rd:107): Warning: <h5> anchor "Usage" already defined
Ark.html:213:1 (Ark.Rd:117): Warning: <h5> anchor "Usage" already defined
Ark.html:229:1 (Ark.Rd:127): Warning: <h5> anchor "Usage" already defined
Ark.html:235:1 (Ark.Rd:131): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
AthenaDriver.html:66:1 (AthenaDriver.Rd:25): Warning: missing </ul> before </div>
sql_translate_env.html:51:1 (sql_translate_env.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Yang Tian <tianyang1211@126.com>’

The Description field contains
  Grover, Jure Leskovec(2016),available at <arXiv:1607.00653>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arnaud",
                      family = "Le Rouzic",
                      role = c("aut", "cre"),
                      email = "arnaud.le-rouzic@universite-paris-saclay.fr",
                      comment = c(ROR = "2007-2015")),
               person(given = c("Arne", "B."),
                      family = "Gjuvsland",
                      role = "aut",
                      comment = "2010"),
               person(given = "Olivier",
                      family = "Ariste",
                      role = "aut",
                      comment = "2010"))
as necessary.
checkRd: (-1) simulatePop.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imp_int_an.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imp_int_an.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ndmodel.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ndmodel.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ndmodel.Rd:18: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Audrey Q. Fu <audreyqyfu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Audrey", "Qiuyan"),
                      family = "Fu",
                      role = "aut"),
               person(given = "Lior",
                      family = "Pachter",
                      role = "aut"),
               person(given = c("Audrey", "Q."),
                      family = "Fu",
                      role = "cre",
                      email = "audreyqyfu@gmail.com"))
as necessary.
Maintainer: ‘Flavio Santi <flavio.santi@univr.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘noisyCE2-package.Rd’:
    https://doi.org/10.1080/10618600.2016.1278003
Maintainer: ‘Valentin Kilian <valentin.kilian@ens-rennes.fr>’

The Description field contains
  <arXiv:2402.19021>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tabea Rebafka <tabea.rebafka@sorbonne-universite.fr>’

The Description field contains
  Roquain, F. Villers (2020) <arXiv:1907.10176>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
convertGroupPair.html:58:1 (convertGroupPair.Rd:16): Warning: missing </ul> before </div>
convertGroupPairIdentifier.html:50:1 (convertGroupPairIdentifier.Rd:12): Warning: missing </ul> before </div>
correctTau.html:46:1 (correctTau.Rd:10): Warning: missing </ul> before </div>
getTauql.html:62:1 (getTauql.Rd:18): Warning: missing </ul> before </div>
modelDensity.html:55:1 (modelDensity.Rd:15): Warning: missing </ul> before </div>
q_delta_ql.html:59:1 (q_delta_ql.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘libr_called.R’ ‘libr_unused.R’ ‘libr_used.R’
Found the following HTML validation problems:
nomnoml_syntax.html:249:1 (nomnoml_syntax.Rd:219): Warning: missing </ul> before </div>
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘nomogramEx.Rd’:
    \keyword{nomogram, survival probability}
Maintainer: ‘Jing Zhang<zj391120@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zj391120@163.com"),
               person(given = "Zhi",
                      family = "Jin",
                      role = "aut"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:31:1 (inst/NEWS.Rd:8): Warning: <h3> anchor "Changes-in-version-0.6.0-+282022-07-15+29" already defined
Maintainer: ‘Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christina",
                      family = "Heinze-Deml",
                      role = c("aut", "cre"),
                      email = "heinzedeml@stat.math.ethz.ch"),
               person(given = "Jonas",
                      family = "Peters",
                      role = "aut",
                      email = "jonas.peters@math.ku.dk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1501.01332>, to nonlinear settings. For more details, see C.
  for Nonlinear Models', <arXiv:1706.08576>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Burak Guris <bguris@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Burak",
                    family = "Guris",
                    role = c("aut", "cre"),
                    email = "bguris@istanbul.edu.tr")
as necessary.
Maintainer: ‘Magnus Astrand <magnus.astrand@astrazeneca.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Magnus",
                    family = "Astrand",
                    role = c("aut", "cre"),
                    email = "magnus.astrand@astrazeneca.com")
as necessary.
Found the following HTML validation problems:
add.caption.html:50:1 (add.caption.Rd:12): Warning: missing </ul> before </div>
do.cat.GOF.html:103:1 (do.cat.GOF.Rd:45): Warning: missing </ul> before </div>
do.multi.GOF.html:109:1 (do.multi.GOF.Rd:48): Warning: missing </ul> before </div>
merge2GOF.html:75:1 (merge2GOF.Rd:28): Warning: missing </ul> before </div>
print.extToTable.html:51:1 (print.extToTable.Rd:12): Warning: missing </ul> before </div>
print.modload.html:51:1 (print.modload.Rd:12): Warning: missing </ul> before </div>
print.sumoR.html:51:1 (print.sumoR.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.items.html:50:1 (as.items.Rd:12): Warning: missing </ul> before </div>
as.sigma.html:50:1 (as.sigma.Rd:12): Warning: missing </ul> before </div>
num_parameters.html:51:1 (num_parameters.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Dong-hyun Oh <oh.donghyun77@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dong-hyun",
                      family = "Oh",
                      role = c("aut", "cre"),
                      email = "oh.donghyun77@gmail.com"),
               person(given = "Dukrok",
                      family = "Suh",
                      role = "aut",
                      email = "dukrok@kist.re.kr"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lp2.Rd: lp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
Nonpareil.col.html:50:1 (Nonpareil.col.Rd:12): Warning: missing </ul> before </div>
Nonpareil.curve.batch.html:75:1 (Nonpareil.curve.batch.Rd:29): Warning: missing </ul> before </div>
Nonpareil.fit_model.html:50:1 (Nonpareil.fit_model.Rd:12): Warning: missing </ul> before </div>
Nonpareil.read_data.html:50:1 (Nonpareil.read_data.Rd:12): Warning: missing </ul> before </div>
Nonpareil.read_metadata.html:46:1 (Nonpareil.read_metadata.Rd:10): Warning: missing </ul> before </div>
cash-Nonpareil.Curve-method.html:51:1 (cash-Nonpareil.Curve-method.Rd:12): Warning: missing </ul> before </div>
cash-Nonpareil.Set-method.html:51:1 (cash-Nonpareil.Set-method.Rd:12): Warning: missing </ul> before </div>
cash-set-Nonpareil.Curve-method.html:55:1 (cash-set-Nonpareil.Curve-method.Rd:14): Warning: missing </ul> before </div>
cash-set-Nonpareil.Set-method.html:55:1 (cash-set-Nonpareil.Set-method.Rd:14): Warning: missing </ul> before </div>
plus-Nonpareil.Set-ANY-method.html:51:1 (plus-Nonpareil.Set-ANY-method.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘D. Lukke Sweet <dlukkesweet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("D.", "Lukke"),
                    family = "Sweet",
                    role = c("aut", "cre"),
                    email = "dlukkesweet@gmail.com")
as necessary.
Maintainer: ‘Luis Castro Martín <luiscastro193@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Castro"),
                      family = "Martín",
                      role = c("aut", "cre"),
                      email = "luiscastro193@gmail.com"),
               person(given = c("Ramón", "Ferri"),
                      family = "García",
                      role = "aut",
                      email = "rferri@ugr.es"),
               person(given = c("María", "del", "Mar"),
                      family = "Rueda",
                      role = "aut",
                      email = "mrueda@ugr.es"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘valliant_weights.Rd’:
    https://doi.org/10.1093/jssam/smz003
Found the following HTML validation problems:
print.nonprob_summary.html:64:1 (print.nonprob_summary.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Brian P. O'Connor  <brian.oconnor@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brian", "P."),
                    family = "O'Connor",
                    role = c("aut", "cre"),
                    email = "brian.oconnor@ubc.ca")
as necessary.
Found the following HTML validation problems:
nord_pal.html:54:1 (nord_pal.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Angelo M. Mineo <angelo.mineo@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Angelo", "M."),
                    family = "Mineo",
                    role = c("aut", "cre"),
                    email = "angelo.mineo@unipa.it")
as necessary.
Maintainer: ‘Kevin Chang <k.chang@auckland.ac.nz>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Shan Gao <gao_shan@mail.nankai.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhenfeng",
                      family = "Wu",
                      role = "aut"),
               person(given = "Shan",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "gao_shan@mail.nankai.edu.cn"))
as necessary.
Found the following HTML validation problems:
run_demo_bg.html:53:1 (run_demo_bg.Rd:15): Warning: missing </ul> before </div>
viewerpane_background_normfluodbf.html:50:1 (viewerpane_background_normfluodbf.Rd:12): Warning: missing </ul> before </div>
wait_for_bg_shinyapp.html:46:1 (wait_for_bg_shinyapp.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Cecile Proust-Lima <cecile.proust-lima@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cecile",
                      family = "Proust-Lima",
                      role = c("aut", "cre"),
                      email = "cecile.proust-lima@inserm.fr"),
               person(given = "Viviane",
                      family = "Philipps",
                      role = "aut"))
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ported", "to", "R", "by", "Alvaro", "A.", "Novo.", "Original", "by", "Joseph", "L.", "Schafer"),
                      family = "<jls@stat.psu.edu>.",
                      role = "aut",
                      email = "jls@stat.psu.edu"),
               person(given = "John",
                      family = "Fox",
                      role = "cre",
                      email = "jfox@mcmaster.ca"))
as necessary.
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pierre",
                      family = "Duchesne",
                      role = "aut"),
               person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = c("aut", "cre"),
                      email = "lafaye@unsw.edu.au"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  autoplot.ts.Rd: geom_forecast, fortify
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
CoreSanityChecks.html:54:1 (CoreSanityChecks.Rd:14): Warning: missing </ul> before </div>
FunctionSanityChecks.html:83:1 (FunctionSanityChecks.Rd:33): Warning: missing </ul> before </div>
MatrixSanityChecks.html:50:1 (MatrixSanityChecks.Rd:12): Warning: missing </ul> before </div>
RasterSanityChecks.html:50:1 (RasterSanityChecks.Rd:12): Warning: missing </ul> before </div>
endMessage.html:58:1 (endMessage.Rd:16): Warning: missing </ul> before </div>
iniTable.html:83:1 (iniTable.Rd:33): Warning: missing </ul> before </div>
iniTableState.html:68:1 (iniTableState.Rd:24): Warning: missing </ul> before </div>
moveRotateContinuous.html:58:1 (moveRotateContinuous.Rd:16): Warning: missing </ul> before </div>
progressMessage.html:83:1 (progressMessage.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Hien D. Nguyen <h.nguyen7@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hien", "D."),
                    family = "Nguyen",
                    role = c("aut", "cre"),
                    email = "h.nguyen7@uq.edu.au")
as necessary.
Maintainer: ‘Mutua Kilai <kilaimutua@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mutua",
                      family = "Kilai",
                      role = c("aut", "cre"),
                      email = "kilaimutua@gmail.com"),
               person(given = "Gichuhi",
                      family = "Waititu",
                      role = "aut"),
               person(given = "Wanjoya",
                      family = "Kibira",
                      role = "aut"))
as necessary.
Maintainer: ‘Terry Therneau <terry.therneau@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Terry",
                    family = "Therneau",
                    role = c("aut", "cre"),
                    email = "terry.therneau@mayo.edu")
as necessary.
Maintainer: ‘Kerstin Rubarth <kerstin.rubarth@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre")),
               person(given = "Kimihiro",
                      family = "Noguchi",
                      role = "ctr"),
               person(given = "Kerstin",
                      family = "Rubarth",
                      role = "cre",
                      email = "kerstin.rubarth@charite.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frank Konietschke <frank.konietschke@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kimihiro",
                      family = "Noguchi",
                      role = "aut",
                      email = "noguchk@wwu.edu"),
               person(given = "Mahbub",
                      family = "Latif",
                      role = "aut",
                      email = "mlatif@isrt.ac.bd"),
               person(given = "Karthinathan",
                      family = "Thangavelu",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre"),
                      email = "frank.konietschke@charite.de"),
               person(given = c("Yulia", "R."),
                      family = "Gel",
                      role = "aut",
                      email = "yxg142030@utdallas.edu"),
               person(given = "Edgar",
                      family = "Brunner",
                      role = "aut",
                      email = "ebrunne1@gwdg.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Maximilian Kiefel <physik210@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Kiefel",
                      role = c("aut", "cre"),
                      email = "physik210@hotmail.com"),
               person(given = c("Arne", "C."),
                      family = "Bathke",
                      role = "aut"))
as necessary.
Maintainer: ‘Jingchen Hu <jingchen.monika.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Quanli",
                      family = "Wang",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Manrique-Vallier",
                      role = "aut"),
               person(given = c("Jerome", "P."),
                      family = "Reiter",
                      role = "aut"),
               person(given = "Jingchen",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "jingchen.monika.hu@gmail.com"))
as necessary.
checkRd: (-1) Lcm.Rd:75: Lost braces
    75 |     \item{\code{GetTrace()}:}{retrieve all traced iterations. Returns a list with all the parameters set using the method SetTrace(). See description of snapshot{reference} method for a description of the parameters.  }
       |                                                                                                                                                                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Lcm.Rd: C++Object-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘coda’
Found the following HTML validation problems:
UpdateX.html:52:1 (UpdateX.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Thibault Laurent <thibault.laurent@univ-tlse1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abdelaati",
                      family = "Daouia",
                      role = "aut",
                      email = "Abdelaati.Daouia@tse-fr.eu"),
               person(given = "Thibault",
                      family = "Laurent",
                      role = c("aut", "cre"),
                      email = "thibault.laurent@univ-tlse1.fr"),
               person(given = "Hohsuk",
                      family = "Noh",
                      role = "aut",
                      email = "word5810@gmail.com"))
as necessary.
Maintainer: ‘Maria Alonso-Pena <maria.alonsopena@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Alonso-Pena",
                      role = c("aut", "cre"),
                      email = "maria.alonsopena@kuleuven.be"),
               person(given = "Maria",
                      family = "Oliveira",
                      role = "aut"),
               person(given = "Jose",
                      family = "Ameijeiras-Alonso",
                      role = "aut"),
               person(given = c("Rosa", "M."),
                      family = "Crujeiras",
                      role = "aut"),
               person(given = "Irene",
                      family = "Gijbels",
                      role = "aut"),
               person(given = "Alberto",
                      family = "Rodriguez-Casal",
                      role = "aut"),
               person(given = "Felicita",
                      family = "Scapini",
                      role = "dtc"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/NPCirc.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) plot.regression.circular.Rd:35: Lost braces
    35 |               code{plot.type="circle"} and \code{x} is the output of \code{\link{kern.reg.circ.lin}}) or to \code{\link{lines3d}} (if \code{plot.type="circle"})
       |                   ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ancova.circ.lin.Rd: circular
  bw.AA.Rd: circular, density.circular
  bw.CV.Rd: circular
  bw.boot.Rd: circular
  bw.circ.local.lik.Rd: circular
  bw.pi.Rd: circular
  bw.reg.circ.lin.Rd: circular
  bw.rt.Rd: circular
  circ.local.lik.Rd: circular
  circsizer.density.Rd: circular
  circsizer.regression.Rd: circular
  dcircmix.Rd: circular
  dpreg.circ.Rd: circular
  dwsn.Rd: circular
  kern.den.circ.Rd: circular, density.circular, plot.density.circular,
    lines.density.circular
  kern.dpreg.circ.Rd: circular
  kern.reg.circ.lin.Rd: circular
  lines.regression.circular.Rd: radial.plot, lines3d
  modalreg.circ.lin.Rd: circular
  noeffect.circ.lin.Rd: circular
  plot.regression.circular.Rd: radial.plot, lines3d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
predict.npcs.html:55:1 (predict.npcs.Rd:14): Warning: missing </ul> before </div>
print.cv.npcs.html:51:1 (print.cv.npcs.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ignacio López-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘beran.Rd’:
    https://doi.org/10.1093/biostatistics/kxx034
  File ‘berancv.Rd’:
    https://doi.org/10.1177/1471082X0700700404
    https://doi.org/10.1093/biostatistics/kxx034
  File ‘hpilot.Rd’:
    https://doi.org/10.1080/10485259308832566
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘latency.Rd’:
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘latencyhboot.Rd’:
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘npcure-package.Rd’:
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘probcure.Rd’:
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1002/cjs.11197
  File ‘probcurehboot.Rd’:
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1016/j.csda.2016.08.002
  File ‘testmz.Rd’:
    https://doi.org/10.1093/biomet/79.4.731
Found the following HTML validation problems:
extract-methods.html:71:1 (extract-methods.Rd:36): Warning: missing </ul> before </div>
show.html:56:1 (show.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
invwishrnd.html:50:1 (invwishrnd.Rd:12): Warning: missing </ul> before </div>
lgamma_mv.html:50:1 (lgamma_mv.Rd:12): Warning: missing </ul> before </div>
plot_ConvDPM.html:76:1 (plot_ConvDPM.Rd:30): Warning: missing </ul> before </div>
update_SS.html:54:1 (update_SS.Rd:14): Warning: missing </ul> before </div>
update_SSsn.html:58:1 (update_SSsn.Rd:16): Warning: missing </ul> before </div>
update_SSst.html:66:1 (update_SSst.Rd:21): Warning: missing </ul> before </div>
wishrnd.html:50:1 (wishrnd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘DefVarBandRule.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
  File ‘DiscHazRateAuxFunctions.Rd’:
    https://doi.org/10.1007/BF00128979
  File ‘TransHazRateEst.Rd’:
    http://dx.doi.org/10.1080/10485250802440184
  File ‘TutzPritscher.Rd’:
    https://doi.org/10.1007/BF00128979
  File ‘VarBandHazEst.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
  File ‘WeibHazFunctionals.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
checkRd: (-1) DiscHazRateAuxFunctions.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DiscHazRateAuxFunctions.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DiscHazRateAuxFunctions.Rd:48: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
H0.html:79:1 (H0.Rd:30): Warning: missing </ul> before </div>
S0.html:85:1 (S0.Rd:33): Warning: missing </ul> before </div>
Sc.html:68:1 (Sc.Rd:24): Warning: missing </ul> before </div>
f1.html:79:1 (f1.Rd:30): Warning: missing </ul> before </div>
f2.html:97:1 (f2.Rd:39): Warning: missing </ul> before </div>
f3.html:97:1 (f3.Rd:39): Warning: missing </ul> before </div>
f4.html:116:1 (f4.Rd:49): Warning: missing </ul> before </div>
m.html:97:1 (m.Rd:39): Warning: missing </ul> before </div>
Maintainer: ‘Huan Cheng <hcheng1118@hotmail.com>’

The Description field contains
  Cheng and He (2021) <arXiv:2110.03833>. The references for sample size
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Robin Ristl <robin.ristl@meduniwien.ac.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
m2r.html:47:1 (m2r.Rd:10): Warning: missing </ul> before </div>
plot_diagram.html:83:1 (plot_diagram.Rd:33): Warning: missing </ul> before </div>
plot_shhr.html:67:1 (plot_shhr.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Jos Feys <jos.feys@faber.kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jos",
                    family = "Feys",
                    role = c("aut", "cre"),
                    email = "jos.feys@faber.kuleuven.be")
as necessary.
Maintainer: ‘Frank Farach <frank.farach@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Daniel E. Weeks <weeks@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "V"),
                      family = "Baron",
                      role = "aut",
                      email = "rvb5@pitt.edu"),
               person(given = "Nandita",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Xinyu",
                      family = "Tang",
                      role = "aut"),
               person(given = c("Daniel", "E."),
                      family = "Weeks",
                      role = c("aut", "cre"),
                      email = "weeks@pitt.edu"))
as necessary.
Maintainer: ‘Xin Tian <tianxtt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "tianxtt@gmail.com"),
               person(given = "Colin",
                      family = "Wu",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
CVlm.html:58:1 (CVlm.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Chung-Hsing Chen <chchen@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chung-Hsing",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "chchen@nhri.org.tw"),
               person(given = "I-Shou",
                      family = "Chang",
                      role = "aut"),
               person(given = c("Chao", "A."),
                      family = "Hsiung",
                      role = "aut"))
as necessary.
Maintainer: ‘Jochen Einbeck <jochen.einbeck@durham.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jochen",
                      family = "Einbeck",
                      role = c("aut", "cre"),
                      email = "jochen.einbeck@durham.ac.uk"),
               person(given = "Ross",
                      family = "Darnell",
                      role = "aut"),
               person(given = "John",
                      family = "Hinde",
                      role = "aut"))
as necessary.
Maintainer: ‘Scott Powers <saberpowers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Scott",
                      family = "Powers",
                      role = c("aut", "cre"),
                      email = "saberpowers@gmail.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Bulent Altunkaynak <bulenta@gazi.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bulent",
                      family = "Altunkaynak",
                      role = c("aut", "cre"),
                      email = "bulenta@gazi.edu.tr"),
               person(given = "Hamza",
                      family = "Gamgam",
                      role = "aut"))
as necessary.
Maintainer: ‘David Allingham <David.Allingham@newcastle.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Allingham",
                      role = c("aut", "cre"),
                      email = "david.allingham@newcastle.edu.au"),
               person(given = "D.J.",
                      family = "Best",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) nppbib.Rd:28: Escaped LaTeX specials: \#
'::' or ':::' import not declared from: ‘crs’
'library' or 'require' call not declared from: ‘crs’
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Maintainer: ‘Oleg Badunenko <oleg.badunenko@brunel.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oleg",
                      family = "Badunenko",
                      role = c("aut", "cre"),
                      email = "oleg.badunenko@brunel.ac.uk"),
               person(given = "Pavlo",
                      family = "Mozharovskyi",
                      role = "aut"),
               person(given = "Yaryna",
                      family = "Kolomiytseva",
                      role = "aut"))
as necessary.
Maintainer: ‘Yong Wang <yongwang@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yong",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "yongwang@auckland.ac.nz")
as necessary.
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
checkRd: (-1) np.reg.test.Rd:148: Lost braces
   148 | ter Braak, C. J. F. (1992). Permutation versus bootstrap significance tests in multiple regression and ANOVA. In K. H. J\"{o}ckel, G. Rothe, & W. Sendler (Eds.), Bootstrapping and related techniques. lecture notes in economics and mathematical systems, vol 376 (pp. 79-86). Springer.
       |                                                                                                                           ^
checkRd: (-1) nptest-package.Rd:73: Lost braces
    73 | ter Braak, C. J. F. (1992). Permutation versus bootstrap significance tests in multiple regression and ANOVA. In K. H. J\"{o}ckel, G. Rothe, & W. Sendler (Eds.), Bootstrapping and related techniques. lecture notes in economics and mathematical systems, vol 376 (pp. 79-86). Springer.
       |                                                                                                                           ^
Maintainer: ‘Gordon J. Ross <gordon.ross@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gordon", "J."),
                    family = "Ross",
                    role = c("aut", "cre"),
                    email = "gordon.ross@ed.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Segmentation" <arxiv:2107.01742>. This uses a version of Wild Binary
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
cell_corr.html:71:1 (cell_corr.Rd:22): Warning: missing </ul> before </div>
fix_input.html:59:1 (fix_input.Rd:16): Warning: missing </ul> before </div>
get_crit.html:51:1 (get_crit.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Eisuke Inoue <eisuke.inoue@marianna-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eisuke",
                    family = "Inoue",
                    role = c("aut", "cre"),
                    email = "eisuke.inoue@marianna-u.ac.jp")
as necessary.
Found the following HTML validation problems:
categorize.html:56:1 (categorize.Rd:18): Warning: missing </ul> before </div>
get.risk.coxph.html:57:1 (get.risk.coxph.Rd:19): Warning: missing </ul> before </div>
get.risk.survreg.html:58:1 (get.risk.survreg.Rd:20): Warning: missing </ul> before </div>
get.surv.km.html:72:1 (get.surv.km.Rd:28): Warning: missing </ul> before </div>
get.uppdwn.html:105:1 (get.uppdwn.Rd:46): Warning: missing </ul> before </div>
get.uppdwn.bin.html:93:1 (get.uppdwn.bin.Rd:41): Warning: missing </ul> before </div>
nribin.count.main.html:59:1 (nribin.count.main.Rd:21): Warning: missing </ul> before </div>
nricens.ipw.main.html:72:1 (nricens.ipw.main.Rd:28): Warning: missing </ul> before </div>
nricens.km.main.html:72:1 (nricens.km.main.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Benjamin Groebe <ben.groebe@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mde.arfima.Rd’:
    https://doi.org/10.1111/j.1368-423X.2007.00202.x
  File ‘mle.arfima.Rd’:
    https://doi.org/10.1111/j.2517-6161.1995.tb02054.x
Found the following HTML validation problems:
plot.Palm.html:58:1 (plot.Palm.Rd:16): Warning: missing </ul> before </div>
plot.mple.html:53:1 (plot.mple.Rd:14): Warning: missing </ul> before </div>
print.mple.html:72:1 (print.mple.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Keven Bluteau <keven.bluteau@usherbrooke.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nse.andrews.Rd: sandwich
  nse.boot.Rd: np
  nse.geyer.Rd: mcmc, mcmcse
  nse.hiruk.Rd: sandwich
  nse.nw.Rd: sandwich
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ming-Chang (Alan) Lee <alan9956@ydu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ching-Shih",
                      family = "Tsou",
                      role = "aut",
                      email = "cstsou@mail.ntcb.edu.tw",
                      comment = "Vince"),
               person(given = "Ming-Chang",
                      family = "Lee",
                      role = "cre",
                      email = "alan9956@ydu.edu.tw",
                      comment = "Alan"))
as necessary.
Maintainer: ‘Artem Shramko <art.shramko@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Artem",
                    family = "Shramko",
                    role = c("aut", "cre"),
                    email = "art.shramko@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘nsga3-package.Rd’:
    \keyword{algorithm,}
    \keyword{nsga3,}
    \keyword{omptimisation,}
    \keyword{optimisation,}
    \keyword{preprocessing,}
    \keyword{selection,}
    \keyword{wrapper,}
Found the following HTML validation problems:
cardinality.html:47:1 (cardinality.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Sonia Perez Fernandez <uo217889@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sonia", "Perez"),
                    family = "Fernandez",
                    role = c("aut", "cre"),
                    email = "uo217889@uniovi.es")
as necessary.
Found the following HTML validation problems:
nsr_core.html:64:1 (nsr_core.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Daliang Ning <ningdaliang@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daliang",
                    family = "Ning",
                    role = c("aut", "cre"),
                    email = "ningdaliang@ou.edu")
as necessary.
checkRd: (-1) MSM.fit.Rd:21: Lost braces
    21 | \code{MSM.fit} returns an object of class code{MSM.lm} or \code{MSM.glm}, depending on the input model.
       |                                               ^
checkRd: (-1) SMC.Smooth.Rd:25: Lost braces; missing escapes or markup?
    25 | observation at current time step. It should return {xx} (the samples xt) and
       |                                                    ^
checkRd: (-1) SMC.Smooth.Rd:26: Lost braces; missing escapes or markup?
    26 | {logww} (their corresponding log weight).}
       | ^
Maintainer: ‘Volker Schmid <volker.schmid@lmu.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
resid_boot.html:50:1 (resid_boot.Rd:12): Warning: missing </ul> before </div>
resid_pboot.html:50:1 (resid_pboot.Rd:12): Warning: missing </ul> before </div>
resid_perm.html:50:1 (resid_perm.Rd:12): Warning: missing </ul> before </div>
resid_rotate.html:50:1 (resid_rotate.Rd:12): Warning: missing </ul> before </div>
resid_sigma.html:54:1 (resid_sigma.Rd:14): Warning: missing </ul> before </div>
rorschach.html:63:1 (rorschach.Rd:17): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Chris Hartgerink [rev] (<https://orcid.org/0000-0003-1050-6809>), Ulysse Boucherie [ctb] (https://www.linkedin.com/in/ulysse-boucherie-7a3b2b111/), Joshua W. Lambert [ctb] (<https://orcid.org/0000-0001-5218-3046>), Karim Mané [ctb] (<https://orcid.org/0000-0002-9892-2999>), Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>), Bankole Ahadzie [aut, cre], London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62)’
  Authors@R: ‘Chris Hartgerink [rev] (ORCID: <https://orcid.org/0000-0003-1050-6809>), Ulysse Boucherie [ctb] (https://www.linkedin.com/in/ulysse-boucherie-7a3b2b111/), Joshua W. Lambert [ctb] (ORCID: <https://orcid.org/0000-0001-5218-3046>), Karim Mané [ctb] (ORCID: <https://orcid.org/0000-0002-9892-2999>), Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Bankole Ahadzie [aut, cre], London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: <https://ror.org/00a0jsq62>)’
Maintainer: ‘Maarten Kruijver <maarten.kruijver@esr.cri.nz>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Hans W. Borchers <hwborchers@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hans", "Werner"),
                      family = "Borchers",
                      role = "aut"),
               person(given = c("Hans", "W."),
                      family = "Borchers",
                      role = "cre",
                      email = "hwborchers@googlemail.com"))
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Gilbert",
                      role = c("aut", "cre"),
                      email = "pgilbert.ttv9z@ncf.ca"),
               person(given = "Ravi",
                      family = "Varadhan",
                      role = "aut"))
as necessary.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ngrams_segmentation.html:95:1 (ngrams_segmentation.Rd:54): Warning: <h3> anchor "ngrams_dictionary" already defined
unigram_sequence_segmentation.html:105:1 (unigram_sequence_segmentation.Rd:61): Warning: <h3> anchor "unigram_dictionary" already defined
Maintainer: ‘Pariya Behrouzi <pariya.behrouzi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pariya",
                    family = "Behrouzi",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0001-6762-5433")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.select.Rd: select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Moritz Hennicke <AAoritz@posteo.de>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/nuts
which should likely be
  https://github.com/ropensci/nuts/issues
instead.
checkRd: (-1) xyz2R.Rd:31: Lost braces
    31 |    \item Finally, code{T} is rotated an angle \code{z} about its NEWEST z-axis.
       |                       ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘README.Rmd’ using rmarkdown

Quitting from README.Rmd:90-109 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'README.Rmd' failed with diagnostics:
Problem while setting up geom aesthetics.
ℹ Error occurred in the 2nd layer.
Caused by error in `check_aesthetics()`:
! Aesthetics must be either length 1 or the same as the data (3104).
✖ Fix the following mappings: `group`.
--- failed re-building ‘README.Rmd’

SUMMARY: processing the following file failed:
  ‘README.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Finnbar Lee <lee.finnbar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘o2plsda-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.o2plsda
> ### Title: Score, VIP or loading plot for the O2PLS results
> ### Aliases: plot.o2plsda
> 
> ### ** Examples
> 
> X <- matrix(rnorm(50),10,5)
> Y <- matrix(rnorm(50),10,5)
> fit <- o2pls(X,Y,2,1,1)
> yy <- rep(c(0,1),5)
> fit0 <- oplsda(fit,yy,2)
> plot(fit0, type="score", group = factor(yy))
Error in `stat_ellipse()`:
! Problem while computing stat.
ℹ Error occurred in the 3rd layer.
Caused by error in `setup_params()`:
! The package "MASS" is required for calculating ellipses with `type =
  "t"`.
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
  3. │ ├─ggplot2::ggplot_build(x)
  4. │ └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$compute_statistic(d, layout)
 14. │         └─ggplot2 (local) compute_statistic(..., self = self)
 15. │           └─self$stat$setup_params(data, self$stat_params)
 16. │             └─ggplot2 (local) setup_params(...)
 17. │               └─rlang::check_installed("MASS", "for calculating ellipses with `type = \"t\"`.")
 18. │                 └─base::stop(cnd)
 19. └─rlang (local) `<fn>`(`<rlb_r___>`)
 20.   └─handlers[[1L]](cnd)
 21.     └─cli::cli_abort(...)
 22.       └─rlang::abort(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘o2plsda.Rmd’ using knitr

Quitting from o2plsda.Rmd:91-96 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'o2plsda.Rmd' failed with diagnostics:
Problem while computing stat.
ℹ Error occurred in the 3rd layer.
Caused by error in `setup_params()`:
! The package "MASS" is required for calculating ellipses with `type =
  "t"`.
--- failed re-building ‘o2plsda.Rmd’

SUMMARY: processing the following file failed:
  ‘o2plsda.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
dot-pls.html:63:1 (dot-pls.Rd:19): Warning: missing </ul> before </div>
loadings.o2plsda.html:55:1 (loadings.o2plsda.Rd:14): Warning: missing </ul> before </div>
loadings.plsda.html:51:1 (loadings.plsda.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Waddell",
                    role = c("aut", "cre"),
                    email = "jason.waddell@openanalytics.eu")
as necessary.
Found the following HTML validation problems:
print.oaii_content_audio.html:53:1 (print.oaii_content_audio.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_aac.html:53:1 (print.oaii_content_audio_aac.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_flac.html:53:1 (print.oaii_content_audio_flac.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_mp3.html:53:1 (print.oaii_content_audio_mp3.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_audio_opus.html:53:1 (print.oaii_content_audio_opus.Rd:12): Warning: missing </ul> before </div>
print.oaii_content_images.html:53:1 (print.oaii_content_images.Rd:12): Warning: missing </ul> before </div>
print.oaii_files_df.html:53:1 (print.oaii_files_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_fine_tuning_events_df.html:53:1 (print.oaii_fine_tuning_events_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_fine_tuning_job.html:53:1 (print.oaii_fine_tuning_job.Rd:12): Warning: missing </ul> before </div>
print.oaii_fine_tuning_jobs_df.html:53:1 (print.oaii_fine_tuning_jobs_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_models_df.html:53:1 (print.oaii_models_df.Rd:12): Warning: missing </ul> before </div>
print.oaii_res_se.html:53:1 (print.oaii_res_se.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jason",
                      family = "Waddell",
                      role = c("aut", "cre"),
                      email = "jason.waddell@openanalytics.eu"),
               person(given = "Willem",
                      family = "Ligtenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Rougier",
                      role = "aut",
                      email = "j.c.rougier@bristol.ac.uk"),
               person(given = c("Robin", "K.", "S."),
                      family = "Hankin",
                      role = "cre",
                      email = "hankin.robin@gmail.com"))
as necessary.
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philip Stubbings <phil@parasec.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Stubbings",
                    role = c("aut", "cre"),
                    email = "phil@parasec.net")
as necessary.
Maintainer: ‘Alejandro Ordonez <ordonezjosealejandro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Ordonez",
                      role = c("aut", "cre"),
                      email = "ordonezjosealejandro@gmail.com"),
               person(given = c("Marcos", "O."),
                      family = "Prates",
                      role = "aut"),
               person(given = c("Larissa", "A."),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos.",
                      role = "aut"))
as necessary.

The Description field contains
  Details can be found in Ordonez et al. (2020) <arXiv:2004.04341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print_payout.html:55:1 (print_payout.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calc_permeability.html:58:1 (calc_permeability.Rd:16): Warning: missing </ul> before </div>
ind_permeability.html:46:1 (ind_permeability.Rd:10): Warning: missing </ul> before </div>
ind_psp.html:50:1 (ind_psp.Rd:12): Warning: missing </ul> before </div>
obic_evalmeasure.html:50:1 (obic_evalmeasure.Rd:12): Warning: missing </ul> before </div>
obic_recommendations.html:46:1 (obic_recommendations.Rd:10): Warning: missing </ul> before </div>
obic_recommendations_bkp.html:54:1 (obic_recommendations_bkp.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Tengfei",
                      family = "Yin",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
theme_Publication.html:46:1 (theme_Publication.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘John Snyder <jcs8v6@mail.missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zheng",
                      role = "aut"),
               person(given = "John",
                      family = "Snyder",
                      role = "cre",
                      email = "jcs8v6@mail.missouri.edu"))
as necessary.
checkRd: (-1) OBMb.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
OBREMatVMatMEl11.html:70:1 (OBREMatVMatMEl11.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatMEl12.html:70:1 (OBREMatVMatMEl12.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatMEl21.html:70:1 (OBREMatVMatMEl21.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatMEl22.html:70:1 (OBREMatVMatMEl22.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatQEl11.html:70:1 (OBREMatVMatQEl11.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatQEl12.html:70:1 (OBREMatVMatQEl12.Rd:22): Warning: missing </ul> before </div>
OBREMatVMatQEl22.html:70:1 (OBREMatVMatQEl22.Rd:22): Warning: missing </ul> before </div>
OBREmatMArgumentA.html:83:1 (OBREmatMArgumentA.Rd:33): Warning: missing </ul> before </div>
OBREmatMArgumentB.html:83:1 (OBREmatMArgumentB.Rd:33): Warning: missing </ul> before </div>
OBREmatMArgumentC.html:83:1 (OBREmatMArgumentC.Rd:33): Warning: missing </ul> before </div>
OBREnvADen.html:70:1 (OBREnvADen.Rd:22): Warning: missing </ul> before </div>
OBREnvANum1.html:70:1 (OBREnvANum1.Rd:22): Warning: missing </ul> before </div>
OBREnvANum2.html:70:1 (OBREnvANum2.Rd:22): Warning: missing </ul> before </div>
fisherEl11Part1.html:59:1 (fisherEl11Part1.Rd:16): Warning: missing </ul> before </div>
fisherEl11Part2.html:59:1 (fisherEl11Part2.Rd:16): Warning: missing </ul> before </div>
fisherEl12Part1.html:59:1 (fisherEl12Part1.Rd:16): Warning: missing </ul> before </div>
fisherEl12Part2.html:59:1 (fisherEl12Part2.Rd:16): Warning: missing </ul> before </div>
fisherEl22Part1.html:59:1 (fisherEl22Part1.Rd:16): Warning: missing </ul> before </div>
fisherEl22Part2.html:59:1 (fisherEl22Part2.Rd:16): Warning: missing </ul> before </div>
summary.html:46:1 (summary.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Paul R. Hibbing <paulhibbing@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
check_interactive.html:46:1 (check_interactive.Rd:10): Warning: missing </ul> before </div>
interactive_comp_lookup.html:62:1 (interactive_comp_lookup.Rd:19): Warning: missing </ul> before </div>
interactive_tree_intensity.html:49:1 (interactive_tree_intensity.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Found the following HTML validation problems:
check_condition.html:50:1 (check_condition.Rd:12): Warning: missing </ul> before </div>
execute_render.html:54:1 (execute_render.Rd:14): Warning: missing </ul> before </div>
execute_run_after.html:54:1 (execute_run_after.Rd:14): Warning: missing </ul> before </div>
execute_run_before.html:50:1 (execute_run_before.Rd:12): Warning: missing </ul> before </div>
leaving_page_backwards.html:54:1 (leaving_page_backwards.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yudong Chen <yudong.chen@statslab.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yudong",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "yudong.chen@statslab.cam.ac.uk"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  <arxiv:2003.03668> for online detection of sudden mean changes in a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ChangepointDetector.Rd:93: Lost braces; missing escapes or markup?
    93 | \code{'sparse'}, then only (S^{diag}, S^{off,d})
       |                               ^
checkRd: (-1) ChangepointDetector.Rd:93: Lost braces; missing escapes or markup?
    93 | \code{'sparse'}, then only (S^{diag}, S^{off,d})
       |                                         ^
checkRd: (-1) ChangepointDetector.Rd:94: Lost braces; missing escapes or markup?
    94 | and (S^{diag}, S^{off,s}) are included in \code{stat} respectively.);
       |        ^
checkRd: (-1) ChangepointDetector.Rd:94: Lost braces; missing escapes or markup?
    94 | and (S^{diag}, S^{off,s}) are included in \code{stat} respectively.);
       |                  ^
Found the following HTML validation problems:
print.ChangepointDetector.html:51:1 (print.ChangepointDetector.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Luke Miller <contact@lukemiller.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plotWaveSpectrum.html:51:1 (plotWaveSpectrum.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
argShow.html:58:1 (argShow.Rd:16): Warning: missing </ul> before </div>
handleFlags-vector-method.html:69:1 (handleFlags-vector-method.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_alpha.html:46:1 (check_alpha.Rd:10): Warning: missing </ul> before </div>
check_honesty_inference.html:54:1 (check_honesty_inference.Rd:14): Warning: missing </ul> before </div>
check_maxdepth.html:46:1 (check_maxdepth.Rd:10): Warning: missing </ul> before </div>
check_minnodesize.html:46:1 (check_minnodesize.Rd:10): Warning: missing </ul> before </div>
check_ntrees.html:46:1 (check_ntrees.Rd:10): Warning: missing </ul> before </div>
check_samplefraction.html:46:1 (check_samplefraction.Rd:10): Warning: missing </ul> before </div>
check_x_y.html:50:1 (check_x_y.Rd:12): Warning: missing </ul> before </div>
forest_weights_fitted_cpp.html:58:1 (forest_weights_fitted_cpp.Rd:18): Warning: missing </ul> before </div>
forest_weights_predicted_cpp.html:63:1 (forest_weights_predicted_cpp.Rd:21): Warning: missing </ul> before </div>
honest_fitted_cpp.html:68:1 (honest_fitted_cpp.Rd:24): Warning: missing </ul> before </div>
honest_predictions_cpp.html:68:1 (honest_predictions_cpp.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.oclust.html:86:1 (plot.oclust.Rd:37): Warning: missing </ul> before </div>
print.oclust.html:51:1 (print.oclust.Rd:12): Warning: missing </ul> before </div>
print.summary.oclust.html:55:1 (print.summary.oclust.Rd:14): Warning: missing </ul> before </div>
summary.oclust.html:51:1 (summary.oclust.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Andrea Pagotto <ajpagotto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Pagotto",
                    role = c("aut", "cre"),
                    email = "ajpagotto@gmail.com")
as necessary.

The Description field contains
  and MacKay (2007) <arXiv:0710.3742> for univariate or multivariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) onlineCPD.Rd:35: Lost braces
    35 |  function(x, lambda){const_hazard(x, lambda=100)}
       |                     ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘duckdb_connection.R’ ‘get_database_functions.R’ ‘mysql_connection.R’
    ‘postgres_connection.R’ ‘snowflake_connection.R’
    ‘sqlite_connection.R’ ‘submit_query.R’ ‘vertica_connection.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘octopus_api.R’
Found the following HTML validation problems:
check_datetime_format.html:47:1 (check_datetime_format.Rd:10): Warning: missing </ul> before </div>
check_logical.html:47:1 (check_logical.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
OdbcConnection.html:199:1 (OdbcConnection.Rd:132): Warning: missing </ul> before </div>
OdbcDriver.html:76:1 (OdbcDriver.Rd:35): Warning: missing </ul> before </div>
OdbcResult.html:102:1 (OdbcResult.Rd:57): Warning: missing </ul> before </div>
SQLServer.html:90:1 (SQLServer.Rd:70): Warning: <h4> anchor "+E2+80+98odbcConnectionColumns_+28+29+E2+80+99" already defined
driver-Snowflake.html:83:1 (driver-Snowflake.Rd:26): Warning: missing </ul> before </div>
isTempTable.html:63:1 (isTempTable.Rd:21): Warning: missing </ul> before </div>
odbcPreviewQuery.html:68:1 (odbcPreviewQuery.Rd:26): Warning: missing </ul> before </div>
Found the following HTML validation problems:
metadata.html:60:1 (metadata.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Sevvandi Kandanaarachchi <sevvandik@gmail.com>’

The Description field contains
  anomalies (Kandanaarachchi, Hyndman 2022) <arXiv:2210.07407>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Sascha",
                      family = "Thomsen",
                      role = "aut"))
as necessary.
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Muntashir-Al-Arefin <muntashir.a2i@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Muntashir-Al-Arefin",
                    role = c("aut", "cre"),
                    email = "muntashir.a2i@gmail.com")
as necessary.
Found the following HTML validation problems:
plot.power.html:116:1 (plot.power.Rd:55): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.html:55:1 (print.Rd:14): Warning: missing </ul> before </div>
summary.html:56:1 (summary.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Found the following HTML validation problems:
body_add_xml.html:56:1 (body_add_xml.Rd:15): Warning: missing </ul> before </div>
notes_location_label.html:51:1 (notes_location_label.Rd:12): Warning: missing </ul> before </div>
notes_location_type.html:51:1 (notes_location_type.Rd:12): Warning: missing </ul> before </div>
pack_folder.html:51:1 (pack_folder.Rd:12): Warning: missing </ul> before </div>
sanitize_images.html:49:1 (sanitize_images.Rd:10): Warning: missing </ul> before </div>
stop_if_not_in_slide_range.html:59:1 (stop_if_not_in_slide_range.Rd:17): Warning: missing </ul> before </div>
unpack_folder.html:51:1 (unpack_folder.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = "Qianying",
                      family = "Liu",
                      role = "aut"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
NEWS.html:91:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:91:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:91:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:91:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:92:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:92:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:92:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:92:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:93:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:93:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:93:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:93:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:94:73 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:94:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:94:192 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:94:196 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:95:81 (NEWS.Rd:47): Warning: missing </p> before <a>
NEWS.html:95:5 (NEWS.Rd:47): Warning: missing </a> before <a>
NEWS.html:95:208 (NEWS.Rd:47): Warning: inserting implicit <p>
NEWS.html:95:212 (NEWS.Rd:47): Warning: discarding unexpected </a>
NEWS.html:91:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:91:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:92:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:92:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:93:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:93:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:94:73 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:94:192 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:95:81 (NEWS.Rd:47): Warning: trimming empty <p>
NEWS.html:95:208 (NEWS.Rd:47): Warning: trimming empty <p>
Maintainer: ‘Hai-Tang Chiou <htchiou1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hai-Tang",
                      family = "Chiou",
                      role = c("aut", "cre"),
                      email = "htchiou1@gmail.com"),
               person(given = "Ching-Kang",
                      family = "Ing",
                      role = "aut"),
               person(given = c("Tze", "Leung"),
                      family = "Lai",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘set_parameters.Rd’
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘01-opIndicators.R’
Maintainer: ‘Matheus H. J. Saldanha <mhjsaldanha@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/matheushjs/ollggamma
which should likely be
  https://github.com/matheushjs/ollggamma/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘OLStraj.R’ ‘cbc_lm.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’
Maintainer: ‘Yujiao Mai <yujiaomai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yujiao",
                      family = "Mai",
                      role = c("cre", "aut"),
                      email = "yujiaomai@gmail.com"),
               person(given = c("Deo", "Kumar"),
                      family = "Srivastava",
                      role = "aut"),
               person(given = c("Kevin", "R."),
                      family = "Krull",
                      role = "aut"))
as necessary.
Maintainer: ‘Hae Kyung Im <haky@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hae", "Kyung"),
                      family = "Im",
                      role = c("aut", "cre"),
                      email = "haky@uchicago.edu"),
               person(given = c("Heather", "E."),
                      family = "Wheeler",
                      role = "aut"),
               person(given = c("Keston", "Aquino"),
                      family = "Michaels",
                      role = "aut"),
               person(given = "Vassily",
                      family = "Trubetskoy",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘krigr_cross_validation.Rd’:
    \keyword{prediction,}
  File ‘make_PCs_irlba.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
  File ‘make_PCs_svd.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
Found the following HTML validation problems:
shared-upset.html:77:1 (shared-upset.Rd:28): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.cvo2m.html:55:1 (print.cvo2m.Rd:14): Warning: missing </ul> before </div>
print.o2m.html:51:1 (print.o2m.Rd:12): Warning: missing </ul> before </div>
print.pre.o2m.html:51:1 (print.pre.o2m.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ctassoc.Rd’:
    https://doi.org/10.1080/03610927608827353
Maintainer: ‘Patrick O'Keefe <okeefep@ohsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "O'Keefe",
                    role = c("aut", "cre"),
                    email = "okeefep@ohsu.edu")
as necessary.
Maintainer: ‘Qi Yan <qiy17@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qi",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "qiy17@pitt.edu")
as necessary.
Found the following HTML validation problems:
assertCharacter.html:89:1 (assertCharacter.Rd:37): Warning: missing </ul> before </div>
assertChoice.html:88:1 (assertChoice.Rd:36): Warning: missing </ul> before </div>
assertClass.html:84:1 (assertClass.Rd:34): Warning: missing </ul> before </div>
assertList.html:88:1 (assertList.Rd:36): Warning: missing </ul> before </div>
assertLogical.html:78:1 (assertLogical.Rd:30): Warning: missing </ul> before </div>
assertNumeric.html:98:1 (assertNumeric.Rd:42): Warning: missing </ul> before </div>
assertTable.html:94:1 (assertTable.Rd:40): Warning: missing </ul> before </div>
assertTrue.html:58:1 (assertTrue.Rd:16): Warning: missing </ul> before </div>
exportSummarisedResult.html:81:1 (exportSummarisedResult.Rd:33): Warning: missing </ul> before </div>
validateNameLevel.html:69:1 (validateNameLevel.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dateRange-startDate.html:42:1 (dateRange-startDate.Rd:9): Warning: missing </ul> before </div>
interval.html:40:1 (interval.Rd:7): Warning: missing </ul> before </div>
Found the following HTML validation problems:
omopViewerPanels.html:48:1 (omopViewerPanels.Rd:11): Warning: missing </ul> before </div>
omopViewerResults.html:48:1 (omopViewerResults.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_colwise.html:46:1 (as_colwise.Rd:10): Warning: missing </ul> before </div>
new_solution.html:78:1 (new_solution.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
knit_print.svg.html:46:1 (knit_print.svg.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
make_omelette.html:54:1 (make_omelette.Rd:14): Warning: missing </ul> before </div>
plate_omelette.html:57:1 (plate_omelette.Rd:20): Warning: missing </ul> before </div>
plate_omelette_rxnko.html:48:1 (plate_omelette_rxnko.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) dot-discoveryRequest.Rd:15-16: Lost braces
    15 | \item{service}{One of {"locations", "deployments", "deviceCategories", "devices",
       |                       ^
checkRd: (-1) dot-discoveryRequest.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{method}{One of {"get", "getTree"}}
       |                      ^
checkRd: (-1) dot-saveAsFile.Rd:19: Lost braces; missing escapes or markup?
    19 | (numeric) Result code from {0: done, -1: error, -2: fileExists}
       |                            ^
Found the following HTML validation problems:
dot-log.html:50:1 (dot-log.Rd:12): Warning: missing </ul> before </div>
dot-prettyPrint.html:63:1 (dot-prettyPrint.Rd:19): Warning: missing </ul> before </div>
dot-print.html:56:1 (dot-print.Rd:15): Warning: missing </ul> before </div>
dot-printErrorMessage.html:47:1 (dot-printErrorMessage.Rd:10): Warning: missing </ul> before </div>
dot-printProductOrderStats.html:56:1 (dot-printProductOrderStats.Rd:15): Warning: missing </ul> before </div>
dot-printProductRequest.html:54:1 (dot-printProductRequest.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-label_index.html:57:1 (dot-label_index.Rd:16): Warning: missing </ul> before </div>
dot-validate_group_stratum_nesting.html:52:1 (dot-validate_group_stratum_nesting.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
glds.html:81:1 (glds.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.
Maintainer: ‘Aniko Szabo <aszabo@mcw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aniko",
                      family = "Szabo",
                      role = c("aut", "cre"),
                      email = "aszabo@mcw.edu"),
               person(given = "Lisa",
                      family = "Pappas",
                      role = "aut"))
as necessary.
checkRd: (-1) oncotree.fit.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
export_formattableWidget.html:63:1 (export_formattableWidget.Rd:19): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘global.R’
Maintainer: ‘Eric E. Graves <gravcon5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eric", "E."),
                    family = "Graves",
                    role = c("aut", "cre"),
                    email = "gravcon5@gmail.com")
as necessary.
Found the following HTML validation problems:
acum.html:46:1 (acum.Rd:10): Warning: missing </ul> before </div>
generate_overlapping_batches.html:54:1 (generate_overlapping_batches.Rd:14): Warning: missing </ul> before </div>
load_onemap_sequences.html:46:1 (load_onemap_sequences.Rd:10): Warning: missing </ul> before </div>
map_save_ram.html:95:1 (map_save_ram.Rd:42): Warning: missing </ul> before </div>
save_onemap_sequences.html:54:1 (save_onemap_sequences.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
search_geo.html:55:1 (search_geo.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Holger von Jouanne-Diedrich <holger.jouanne-diedrich@h-ab.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "von Jouanne-Diedrich",
                    role = c("aut", "cre"),
                    email = "holger.jouanne-diedrich@h-ab.de")
as necessary.
Maintainer: ‘Jun Li <jli49@kent.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lingjun",
                      family = "Li",
                      role = "aut"),
               person(given = "Jun",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "jli49@kent.edu"))
as necessary.

The Description field contains
  <arXiv:1911.07762>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
lapply_cbind.html:54:1 (lapply_cbind.Rd:14): Warning: missing </ul> before </div>
lapply_cbind_df.html:54:1 (lapply_cbind_df.Rd:14): Warning: missing </ul> before </div>
lapply_rbind.html:54:1 (lapply_rbind.Rd:14): Warning: missing </ul> before </div>
lapply_rbind_df.html:54:1 (lapply_rbind_df.Rd:14): Warning: missing </ul> before </div>
lp_vector_cpp.html:44:1 (lp_vector_cpp.Rd:9): Warning: missing </ul> before </div>
print_to_message.html:46:1 (print_to_message.Rd:10): Warning: missing </ul> before </div>
pst.html:46:1 (pst.Rd:10): Warning: missing </ul> before </div>
rls_update_cpp.html:77:1 (rls_update_cpp.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘David Degras <ddegrasv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Degras",
                      role = c("aut", "cre"),
                      email = "ddegrasv@gmail.com"),
               person(given = "Herve",
                      family = "Cardot",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tab_onsv.R’ ‘tab_onsv.Rd’
Maintainer: ‘Sergei Tarasov <sergei.tarasov@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Tarasov",
                    role = c("aut", "cre"),
                    email = "sergei.tarasov@helsinki.fi")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘1onto.R’ ‘edit_matches.R’
Found the following HTML validation problems:
make_tree.html:57:1 (make_tree.Rd:17): Warning: missing </ul> before </div>
show-onto-method.html:47:1 (show-onto-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Found the following HTML validation problems:
check.html:50:1 (check.Rd:12): Warning: missing </ul> before </div>
get_term_property.html:58:1 (get_term_property.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Found the following HTML validation problems:
private.html:46:1 (private.Rd:10): Warning: missing </ul> before </div>
super.html:46:1 (super.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>’

The BugReports field in DESCRIPTION has
  https://github.com/sthawinke/oosse
which should likely be
  https://github.com/sthawinke/oosse/issues
instead.
Maintainer: ‘Philipp Külpmann <philipp@kuelpmann.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de",
                      comment = c(ORCID = "0000-0002-5818-6958")),
               person(given = "Sebastian",
                      family = "Malkusch",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6766-140X")),
               person(given = "Alfred",
                      family = "Ultsch",
                      role = "aut",
                      comment = c(ORCID = "0000-0002-7845-3283")))
as necessary.
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Petr",
                      family = "Simecek",
                      role = "aut",
                      email = "simecek@gmail.com"),
               person(given = "Juergen",
                      family = "Pilz",
                      role = "aut",
                      email = "juergen.pilz@aau.at"),
               person(given = "Mingui",
                      family = "Wang",
                      role = "aut",
                      email = "mail.mwang@gmail.com"),
               person(given = "Albrecht",
                      family = "Gebhardt.",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Found the following HTML validation problems:
dot-openBankingClient.html:202:1 (dot-openBankingClient.Rd:109): Warning: missing </ul> before </div>
dot-openBankingClient.html:124:1 (dot-openBankingClient.Rd:67): Warning: <h5> anchor "Usage" already defined
dot-openBankingClient.html:130:1 (dot-openBankingClient.Rd:71): Warning: <h5> anchor "Returns" already defined
dot-openBankingClient.html:147:1 (dot-openBankingClient.Rd:80): Warning: <h5> anchor "Usage" already defined
dot-openBankingClient.html:153:1 (dot-openBankingClient.Rd:84): Warning: <h5> anchor "Returns" already defined
dot-openBankingClient.html:170:1 (dot-openBankingClient.Rd:93): Warning: <h5> anchor "Usage" already defined
dot-openBankingClient.html:176:1 (dot-openBankingClient.Rd:97): Warning: <h5> anchor "Arguments" already defined
dot-openBankingClient.html:191:1 (dot-openBankingClient.Rd:106): Warning: <h5> anchor "Returns" already defined
Found the following HTML validation problems:
opencage_key.html:52:1 (opencage_key.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Aaron",
                      family = "Puchert",
                      role = "aut",
                      email = "aaronpuchert@alice-dsl.net"))
as necessary.
License stub is invalid DCF.
File ‘OpenCL/libs/R_OpenCL.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Running ‘buffer.R’ [0s/1s]
  Comparing ‘buffer.Rout’ to ‘buffer.Rout.save’ ...5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< > 
  Running ‘kernel.R’ [3s/5s]
  Comparing ‘kernel.Rout’ to ‘kernel.Rout.save’ ...5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< >
Maintainer: ‘Kari Gunnarsson <kari.gunnarsson@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kari",
                    family = "Gunnarsson",
                    role = c("aut", "cre"),
                    email = "kari.gunnarsson@outlook.com")
as necessary.
Found the following HTML validation problems:
print.openEBGM.html:56:1 (print.openEBGM.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
collection_viewer.html:53:1 (collection_viewer.Rd:14): Warning: missing </ul> before </div>
conformance.html:49:1 (conformance.Rd:11): Warning: missing </ul> before </div>
delete_service.html:51:1 (delete_service.Rd:13): Warning: missing </ul> before </div>
delete_user_process.html:52:1 (delete_user_process.Rd:13): Warning: missing </ul> before </div>
list_jobs.html:47:1 (list_jobs.Rd:11): Warning: missing </ul> before </div>
logout.html:47:1 (logout.Rd:11): Warning: missing </ul> before </div>
print.ProcessInfo.html:51:1 (print.ProcessInfo.Rd:12): Warning: missing </ul> before </div>
print.User.html:51:1 (print.User.Rd:12): Warning: missing </ul> before </div>
process_viewer.html:53:1 (process_viewer.Rd:14): Warning: missing </ul> before </div>
toJSON-deprecated.html:52:1 (toJSON-deprecated.Rd:17): Warning: missing </ul> before </div>
update_user_process.html:76:1 (update_user_process.Rd:28): Warning: missing </ul> before </div>
validate_process.html:56:1 (validate_process.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘format_search_term.R’ ‘openFDA.R’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(opengraph)
  > 
  > test_check('opengraph')
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 8 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-property.R:3:3'): og_property works ──────────────────────────
  og_property("https://www.rstudio.com", "og:title") (`actual`) isn't fully contained within c("Posit", NA_character_) (`expected`).
  * Missing from `expected`: "Posit | The Open-Source Data Science Company"
  * Present in `expected`:   "Posit", NA
  
  ── Failure ('test-validate.R:7:3'): og_validate() works ────────────────────────
  og_validate(web) (`actual`) not equal to TRUE (`expected`).
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 8 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
GaborFeatureExtract.html:65:1 (GaborFeatureExtract.Rd:140): Warning: <h3> anchor "Methods" already defined
GaborFeatureExtract.html:119:1 (GaborFeatureExtract.Rd:165): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:160:1 (GaborFeatureExtract.Rd:195): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:180:1 (GaborFeatureExtract.Rd:213): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:225:1 (GaborFeatureExtract.Rd:249): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:245:1 (GaborFeatureExtract.Rd:267): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:290:1 (GaborFeatureExtract.Rd:303): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:300:1 (GaborFeatureExtract.Rd:311): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:325:1 (GaborFeatureExtract.Rd:327): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:337:1 (GaborFeatureExtract.Rd:337): Warning: <h5> anchor "Arguments" already defined
GaborFeatureExtract.html:368:1 (GaborFeatureExtract.Rd:358): Warning: <h5> anchor "Usage" already defined
GaborFeatureExtract.html:374:1 (GaborFeatureExtract.Rd:362): Warning: <h5> anchor "Arguments" already defined
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acs12.Rd’ ‘arbuthnot.Rd’ ‘ask.Rd’ ‘biontech_adolescents.Rd’
    ‘birds.Rd’ ‘blizzard_salary.Rd’ ‘census.Rd’ ‘cia_factbook.Rd’
    ‘climber_drugs.Rd’ ‘comics.Rd’ ‘daycare_fines.Rd’ ‘dotPlot.Rd’
    ‘drone_blades.Rd’ ‘epa2021.Rd’ ‘exam_grades.Rd’ ‘fact_opinion.Rd’
    ‘family_college.Rd’ ‘fish_age.Rd’ ‘friday.Rd’ ‘gdp_countries.Rd’
    ‘gss_wordsum_class.Rd’ ‘house.Rd’ ‘iowa.Rd’ ‘ipo.Rd’ ‘iran.Rd’
    ‘labor_market_discriminiation.Rd’ ‘lecture_learning.Rd’
    ‘lego_population.Rd’ ‘lego_sample.Rd’ ‘lizard_run.Rd’
    ‘london_boroughs.Rd’ ‘london_murders.Rd’ ‘malaria.Rd’ ‘mariokart.Rd’
    ‘mlb_teams.Rd’ ‘mlbbat10.Rd’ ‘mn_police_use_of_force.Rd’
    ‘nba_finals.Rd’ ‘nba_finals_teams.Rd’ ‘nycflights.Rd’ ‘orings.Rd’
    ‘oscars.Rd’ ‘paralympic_1500.Rd’ ‘piracy.Rd’ ‘race_justice.Rd’
    ‘simpsons_paradox_covid.Rd’ ‘soda.Rd’ ‘sowc_child_mortality.Rd’
    ‘sowc_demographics.Rd’ ‘sowc_maternal_newborn.Rd’ ‘ssd_speed.Rd’
    ‘twins.Rd’ ‘ucla_textbooks_f18.Rd’ ‘us_temperature.Rd’ ‘usb_admit.Rd’
    ‘world_pop.Rd’
Found the following HTML validation problems:
lab_report.html:88:1 (lab_report.Rd:41): Warning: missing </ul> before </div>
openintro_pal.html:54:1 (openintro_pal.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
acessor.html:69:1 (acessor.Rd:24): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’ ‘weather_now.R’
Maintainer: ‘Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuseppe",
                      family = "Casalicchio",
                      role = c("aut", "cre"),
                      email = "giuseppe.casalicchio@stat.uni-muenchen.de"),
               person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Dominik",
                      family = "Kirchhoff",
                      role = "aut",
                      email = "dom.kirchhoff@gmail.com"),
               person(given = "Michel",
                      family = "Lang",
                      role = "aut",
                      email = "michellang@gmail.com"),
               person(given = "Benjamin",
                      family = "Hofner",
                      role = "aut",
                      email = "benjamin.hofner@fau.de"),
               person(given = "Jakob",
                      family = "Bossek",
                      role = "aut",
                      email = "j.bossek@gmail.com"),
               person(given = "Pascal",
                      family = "Kerschke",
                      role = "aut",
                      email = "kerschke@uni-muenster.de"),
               person(given = "Joaquin",
                      family = "Vanschoren",
                      role = "aut",
                      email = "joaquin.vanschoren@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
uploadOMLTask.html:103:1 (uploadOMLTask.Rd:51): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_at_age_ts.html:67:1 (get_at_age_ts.Rd:25): Warning: missing </ul> before </div>
get_ts.html:105:1 (get_ts.Rd:73): Warning: missing </ul> before </div>
Unknown package ‘umx’ in Rd xrefs
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘OpenRange_api_load_species.Rd’ ‘OpenRange_api_species.Rd’
    ‘OpenRange_load_species.Rd’ ‘OpenRange_sf.R’ ‘OpenRange_species.Rd’
Found the following HTML validation problems:
calculate_similarity.html:54:1 (calculate_similarity.Rd:14): Warning: missing </ul> before </div>
check_excel_input.html:46:1 (check_excel_input.Rd:10): Warning: missing </ul> before </div>
check_excel_input_test.html:46:1 (check_excel_input_test.Rd:10): Warning: missing </ul> before </div>
count_matches.html:50:1 (count_matches.Rd:12): Warning: missing </ul> before </div>
dt_default.html:50:1 (dt_default.Rd:12): Warning: missing </ul> before </div>
emptify_object.html:46:1 (emptify_object.Rd:10): Warning: missing </ul> before </div>
make-names.html:48:1 (make-names.Rd:13): Warning: missing </ul> before </div>
network_graph_images.html:130:1 (network_graph_images.Rd:65): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Jakub Jędrusiak [aut, cre, cph] (<https://orcid.org/0000-0002-6481-8210>, University of Wroclaw), Peter Organisciak [ctb] (<https://orcid.org/0000-0002-9058-2280>, University of Denver), Selcuk Acar [ctb] (<https://orcid.org/0000-0003-4044-985X>, University of North Texas), Denis Dumas [ctb] (<https://orcid.org/0000-0002-8446-4720>, University of Georgia), Pier-Luc de Chantal [ctb] (<https://orcid.org/0000-0002-6974-6172>, Université du Québec à Montréal), Kelly Berthiaume [ctb] (<https://orcid.org/0000-0002-5285-0512>, University of North Texas)’
  Authors@R: ‘Jakub Jędrusiak [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-6481-8210>, affiliation: University of Wroclaw), Peter Organisciak [ctb] (ORCID: <https://orcid.org/0000-0002-9058-2280>, affiliation: University of Denver), Selcuk Acar [ctb] (ORCID: <https://orcid.org/0000-0003-4044-985X>, affiliation: University of North Texas), Denis Dumas [ctb] (ORCID: <https://orcid.org/0000-0002-8446-4720>, affiliation: University of Georgia), Pier-Luc de Chantal [ctb] (ORCID: <https://orcid.org/0000-0002-6974-6172>, affiliation: Université du Québec à Montréal), Kelly Berthiaume [ctb] (ORCID: <https://orcid.org/0000-0002-5285-0512>, affiliation: University of North Texas)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘oscai.R’
Maintainer: ‘Win Cowger <wincowger@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#Open-Specy_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Found the following HTML validation problems:
pbkdf.html:60:1 (pbkdf.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
autoplot.osmtile.html:55:1 (autoplot.osmtile.Rd:14): Warning: missing </ul> before </div>
plot.osmtile.html:63:1 (plot.osmtile.Rd:18): Warning: missing </ul> before </div>
print.OpenStreetMap.html:51:1 (print.OpenStreetMap.Rd:12): Warning: missing </ul> before </div>
projectMercator.html:54:1 (projectMercator.Rd:14): Warning: missing </ul> before </div>
raster-osmtile-method.html:51:1 (raster-osmtile-method.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.eava_summary.html:52:1 (print.eava_summary.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
all.equal.html:55:1 (all.equal.Rd:15): Warning: missing </ul> before </div>
as_POSIXct_utc.html:46:1 (as_POSIXct_utc.Rd:10): Warning: missing </ul> before </div>
temp_xlsx.html:46:1 (temp_xlsx.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Romain Francois <romain@r-enthusiasts.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Romain",
                    family = "Francois",
                    role = c("aut", "cre"),
                    email = "romain@r-enthusiasts.com")
as necessary.
Found the following HTML validation problems:
not-in.html:50:1 (not-in.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de",
                      comment = c(ORCID = "0000-0002-5818-6958")),
               person(given = "Sebastian",
                      family = "Malkusch",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6766-140X")),
               person(given = "Martin",
                      family = "Maechler",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Rousseeuw",
                      role = "ctb"),
               person(given = "Anja",
                      family = "Struyf",
                      role = "ctb"),
               person(given = "Mia",
                      family = "Hubert",
                      role = "ctb"),
               person(given = "Kurt",
                      family = "Hornik",
                      role = "ctb"))
as necessary.
Maintainer: ‘Monsuru Adepeju <monsuur2010@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monsuru",
                      family = "Adepeju,",
                      role = c("cre", "aut")),
               person(given = "Monsuru",
                      family = "Adepeju",
                      role = "cre",
                      email = "monsuur2010@yahoo.com"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/MAnalytics/opitools/issues/1
which should likely be
  https://github.com/MAnalytics/opitools/issues/1/issues
instead.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) word_imp.Rd:14: Lost braces
    14 | number of individual records. An \code{n} x code{2} dataframe can
       |                                                 ^
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
checkRd: (-1) MonteCarlo.Rd:23: Lost braces
    23 | N is computed from \code{p} length. M is code{10^4} by default.
       |                                              ^
Maintainer: ‘Seung Won Hyun <yellowatom09@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seung", "Won"),
                      family = "Hyun",
                      role = c("aut", "cre"),
                      email = "yellowatom09@gmail.com"),
               person(given = c("Weng", "Kee"),
                      family = "Wong",
                      role = "aut"),
               person(given = "Yarong",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Mizanur Khondoker <mizanur.khondoker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mizanur",
                    family = "Khondoker",
                    role = c("aut", "cre"),
                    email = "mizanur.khondoker@gmail.com")
as necessary.
Found the following HTML validation problems:
dot-rangeCheck.html:59:1 (dot-rangeCheck.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_inputs.html:154:1 (check_inputs.Rd:71): Warning: missing </ul> before </div>
Maintainer: ‘Bruno Remillard <bruno.remillard@hec.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Remillard",
                    role = c("aut", "cre"),
                    email = "bruno.remillard@hec.ca")
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) drawdesign.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:44: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Nicholas Hamilton <n.hamilton@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "n.hamilton@unsw.edu.au")
as necessary.
checkRd: (-1) gnu_style.Rd:24: Lost braces
    24 | [GNU Command Line Standards]{http://www.gnu.org/prep/standards/standards.html}
       |                             ^
Maintainer: ‘Monica Lopez Raton <monica.lopez.raton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monica",
                      family = "Lopez-Raton",
                      role = "aut"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"),
               person(given = c("Monica", "Lopez"),
                      family = "Raton",
                      role = "cre",
                      email = "monica.lopez.raton@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Michael",
                      family = "Sklar",
                      role = "aut"),
               person(given = c("Abba", "M."),
                      family = "Krieger",
                      role = "aut"),
               person(given = "David",
                      family = "Azriel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  M. Krieger, Michael Sklar and David Azriel (2020) <arXiv:1905.03337>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiao Lin <xlin3@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiao",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "xlin3@mdanderson.org"),
               person(given = "Xuelin",
                      family = "Huang",
                      role = "aut",
                      email = "xlhuang@mdanderson.org"))
as necessary.
Maintainer: ‘Enrique del Castillo <exd13@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Enrique", "del"),
                      family = "Castillo",
                      role = c("aut", "cre"),
                      email = "exd13@psu.edu"),
               person(given = "Peng",
                      family = "Chen",
                      role = "aut"),
               person(given = "Adam",
                      family = "Meyers",
                      role = "aut"),
               person(given = "John",
                      family = "Hunt",
                      role = "aut"),
               person(given = "James",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
get_info.html:46:1 (get_info.Rd:10): Warning: missing </ul> before </div>
samplingf.html:72:1 (samplingf.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘Vithor Rosa Franco <vithorfranco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vithor", "Rosa"),
                    family = "Franco",
                    role = c("aut", "cre"),
                    email = "vithorfranco@gmail.com")
as necessary.

The Description field contains
  Ruder (2016) <arXiv:1609.04747v2>. Currently, the Steepest 2-Groups
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kai Husmann <kai.husmann@uni-goettingen.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Florian Gerber <flora.fauna.gerber@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Edgar Bueno <edgar.bueno@stat.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edgar",
                    family = "Bueno",
                    role = c("aut", "cre"),
                    email = "edgar.bueno@stat.su.se")
as necessary.
Maintainer: ‘Mitchell Lyons <mitchell.lyons@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘find_optimal.Rd’:
    \keyword{optimal,}
    \keyword{partition,}
  File ‘get_characteristic.Rd’:
    \keyword{characteristic,}
    \keyword{diagnostic,}
  File ‘merge_clusters.Rd’:
    \keyword{iterative,}
    \keyword{merging,}
    \keyword{reallocation,}
Maintainer: ‘Antoine Champion <antoine.champion@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Champion",
                    role = c("aut", "cre"),
                    email = "antoine.champion@outlook.com")
as necessary.
Maintainer: ‘Doug Kelkhoff <doug.kelkhoff@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://matrix.to/#/#r-pkg-options:matrix.org
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Found the following HTML validation problems:
assert_naming_fn_signature.html:46:1 (assert_naming_fn_signature.Rd:10): Warning: missing </ul> before </div>
option_spec.html:166:1 (option_spec.Rd:109): Warning: missing </ul> before </div>
Maintainer: ‘John T. Buynak <jbuynak94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Buynak",
                    role = c("aut", "cre"),
                    email = "jbuynak94@gmail.com")
as necessary.
Maintainer: ‘Robin Wellmann <r.wellmann@uni-hohenheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Wellmann",
                    role = c("aut", "cre"),
                    email = "r.wellmann@uni-hohenheim.de")
as necessary.
Found the following HTML validation problems:
show-BlockedInfinitySparseMatrix-method.html:47:1 (show-BlockedInfinitySparseMatrix-method.Rd:10): Warning: missing </ul> before </div>
show-InfinitySparseMatrix-method.html:48:1 (show-InfinitySparseMatrix-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
new_strat.html:63:1 (new_strat.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Prakash <prakash2@uwalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Prakash",
                    role = c("aut", "cre"),
                    email = "prakash2@uwalumni.com",
                    comment = "PKS Prakash")
as necessary.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "H."),
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jaekim8080@gmail.com")
as necessary.
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gero",
                    family = "Szepannek",
                    role = c("aut", "cre"),
                    email = "gero.szepannek@web.de")
as necessary.
Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adetayo",
                      family = "Kasim",
                      role = "aut"),
               person(given = "Martin",
                      family = "Otava",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Rudradev",
                      family = "Sengupta",
                      role = "cre",
                      email = "rudradev.sengupta@uhasselt.be"))
as necessary.
Maintainer: ‘Emily V. Dressler <EmilyVDressler@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emily", "V."),
                      family = "Dressler",
                      role = c("aut", "cre"),
                      email = "emilyvdressler@gmail.com"),
               person(given = c("PhD", "Zhengyan"),
                      family = "Huang",
                      role = "aut"))
as necessary.
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "Alberto", "Cardozo"),
                    family = "Delgado",
                    role = c("aut", "cre"),
                    email = "cardozorpackages@gmail.com")
as necessary.
Maintainer: ‘Christian Sims <christian_j_sims@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Sims",
                    role = c("aut", "cre"),
                    email = "christian_j_sims@yahoo.com")
as necessary.
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kaspar",
                    family = "Rufibach",
                    role = c("aut", "cre"),
                    email = "kaspar.rufibach@gmail.com")
as necessary.
checkRd: (-1) internal.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:56-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:62-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:70: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Philippe Lambert <p.lambert@uliege.be>’

The Description field contains
  <doi:10.1177/1471082X231181173> ; Preprint: <arXiv:2210.01668>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘James A. Fordyce <jfordyce@utk.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Fordyce",
                      role = "aut"),
               person(given = c("James", "A."),
                      family = "Fordyce",
                      role = "cre",
                      email = "jfordyce@utk.edu"))
as necessary.
Maintainer: ‘Marco Corneli <marcogenni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Corneli",
                      role = c("aut", "cre"),
                      email = "marcogenni@gmail.com"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"))
as necessary.
Maintainer: ‘Ken Ryan <kjryan@mail.wvu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ken",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "kjryan@mail.wvu.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
Agresti_equation_1.html:54:1 (Agresti_equation_1.Rd:14): Warning: missing </ul> before </div>
Agresti_equation_2.html:58:1 (Agresti_equation_2.Rd:16): Warning: missing </ul> before </div>
Agresti_equation_3.html:54:1 (Agresti_equation_3.Rd:14): Warning: missing </ul> before </div>
Agresti_f.html:54:1 (Agresti_f.Rd:14): Warning: missing </ul> before </div>
Cliff_dependent_compute_cov.html:46:1 (Cliff_dependent_compute_cov.Rd:10): Warning: missing </ul> before </div>
McCullagh_compute_df.html:50:1 (McCullagh_compute_df.Rd:12): Warning: missing </ul> before </div>
McCullagh_compute_lambda.html:51:1 (McCullagh_compute_lambda.Rd:13): Warning: missing </ul> before </div>
McCullagh_derivative_omega_wrt_psi.html:70:1 (McCullagh_derivative_omega_wrt_psi.Rd:22): Warning: missing </ul> before </div>
McCullagh_logits.html:51:1 (McCullagh_logits.Rd:13): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_kappa_2.html:59:1 (Schuster_second_deriv_log_l_wrt_kappa_2.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_kappa_v.html:59:1 (Schuster_second_deriv_log_l_wrt_kappa_v.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_marginal_pi_2.html:59:1 (Schuster_second_deriv_log_l_wrt_marginal_pi_2.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_marginal_pi_kappa.html:59:1 (Schuster_second_deriv_log_l_wrt_marginal_pi_kappa.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_marginal_pi_v.html:59:1 (Schuster_second_deriv_log_l_wrt_marginal_pi_v.Rd:17): Warning: missing </ul> before </div>
Schuster_second_deriv_log_l_wrt_v_2.html:59:1 (Schuster_second_deriv_log_l_wrt_v_2.Rd:17): Warning: missing </ul> before </div>
handle_untied_below_maximum.html:70:1 (handle_untied_below_maximum.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fadoua",
                      family = "Balabdaoui",
                      role = "aut"),
               person(given = "Kaspar",
                      family = "Rufibach",
                      role = c("aut", "cre"),
                      email = "kaspar.rufibach@gmail.com"),
               person(given = "Filippo",
                      family = "Santambrogio",
                      role = "aut"))
as necessary.
checkRd: (-1) minK.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) minK.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) minK.Rd:15: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ordAOV.Rd: LRTSim, RLRTSim, RLRsim, exactLRT, exactRLRT
  ordGene.Rd: LRTSim, RLRTSim
  ordSmooth.Rd: gam, mgcv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
sync.html:51:1 (sync.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Gabriel Okasa <okasa.gabriel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriel",
                      family = "Okasa",
                      role = c("aut", "cre"),
                      email = "okasa.gabriel@gmail.com"),
               person(given = "Michael",
                      family = "Lechner",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Lechner & Okasa (2019) <arXiv:1907.02436>. The Ordered Forest flexibly
  2017) <arXiv:1508.04409>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) orf.Rd:74: Lost braces
    74 | matrix of covariates \code{X} and a vector of outcomes 'code{Y} to the \code{orf}
       |                                                             ^
Found the following HTML validation problems:
check_X.html:46:1 (check_X.Rd:10): Warning: missing </ul> before </div>
check_newdata.html:50:1 (check_newdata.Rd:12): Warning: missing </ul> before </div>
get_honest_C.html:59:1 (get_honest_C.Rd:16): Warning: missing </ul> before </div>
get_weights_C.html:55:1 (get_weights_C.Rd:14): Warning: missing </ul> before </div>
margins_output.html:47:1 (margins_output.Rd:10): Warning: missing </ul> before </div>
margins_output_latex.html:47:1 (margins_output_latex.Rd:10): Warning: missing </ul> before </div>
pred_honest_C.html:59:1 (pred_honest_C.Rd:16): Warning: missing </ul> before </div>
pred_weights_C.html:59:1 (pred_weights_C.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_project_quarto_external_results.html:50:1 (create_project_quarto_external_results.Rd:12): Warning: missing </ul> before </div>
create_project_quarto_internal_results.html:50:1 (create_project_quarto_internal_results.Rd:12): Warning: missing </ul> before </div>
move_directory.html:54:1 (move_directory.Rd:14): Warning: missing </ul> before </div>
path.html:46:1 (path.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Yi Tang <yi.tang.uk@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "yi.tang.uk@me.com")
as necessary.
Maintainer: ‘Tianqing Liu <tianqingliu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianqing",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "tianqingliu@gmail.com"),
               person(given = "Nan",
                      family = "Lin",
                      role = "aut"),
               person(given = "Ningzhong",
                      family = "Shi",
                      role = "aut"),
               person(given = "Baoxue",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘cluster of fitted mean data.eps’ ‘cluster of fitted mean data.txt’
  ‘cluster of raw data.txt’
Maintainer: ‘Duncan Murdoch <murdoch.duncan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Murdoch",
                    role = c("aut", "cre"),
                    email = "murdoch.duncan@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
check_id_and_time.html:52:1 (check_id_and_time.Rd:14): Warning: missing </ul> before </div>
id_folds_to_folds.html:52:1 (id_folds_to_folds.Rd:13): Warning: missing </ul> before </div>
wrap_in_try.html:50:1 (wrap_in_try.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
zsum.html:46:1 (zsum.Rd:10): Warning: missing </ul> before </div>
zsumgra.html:46:1 (zsumgra.Rd:10): Warning: missing </ul> before </div>
zsummin.html:46:1 (zsummin.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Found the following HTML validation problems:
zsum.html:46:1 (zsum.Rd:11): Warning: missing </ul> before </div>
zsumgra.html:46:1 (zsumgra.Rd:11): Warning: missing </ul> before </div>
zsummin.html:46:1 (zsummin.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
oddstable.html:46:1 (oddstable.Rd:10): Warning: missing </ul> before </div>
oddstable_graph.html:68:1 (oddstable_graph.Rd:24): Warning: missing </ul> before </div>
orm_graph.html:80:1 (orm_graph.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brandon",
                    family = "Whitcher",
                    role = c("aut", "cre"),
                    email = "bwhitcher@gmail.com")
as necessary.
checkRd: (-1) hillEquation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:81-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:84-85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:86-87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:91-93: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
petWrapper.html:50:1 (petWrapper.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhu",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0002-0773-0052")
as necessary.
Found the following HTML validation problems:
KernelDist_cross.html:50:1 (KernelDist_cross.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Andrew Redd <andrew.redd@hsc.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Redd",
                    role = c("aut", "cre"),
                    email = "andrew.redd@hsc.utah.edu")
as necessary.
Found the following HTML validation problems:
p_rho.html:58:1 (p_rho.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Novomestky",
                    role = c("aut", "cre"),
                    email = "fnovomes@poly.edu")
as necessary.
checkRd: (-1) polynomial.derivatives.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fitS4.R’ ‘helpers.R’
checkRd: (-1) oscar.Rd:44: Lost braces; missing escapes or markup?
    44 | \item{print}{Level of verbosity in Fortran (may not be visible on all terminals); should be an integer between {range, range}, Default: 3}
       |                                                                                                                ^
checkRd: (-1) oscar.control.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{start}{Starting point generation method, see vignettes for details; should be an integer between {range,range}, Default: 2}
       |                                                                                                        ^
Maintainer: ‘Steffen Kriewald <kriewald@pik-potsdam.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steffen",
                      family = "Kriewald",
                      role = c("aut", "cre"),
                      email = "kriewald@pik-potsdam.de"),
               person(given = "Till",
                      family = "Fluschnik",
                      role = "aut"),
               person(given = "Dominik",
                      family = "Reusser",
                      role = "aut"),
               person(given = "Diego",
                      family = "Rybski",
                      role = "aut"))
as necessary.
Maintainer: ‘Olga Savchuk <olga.y.savchuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olga",
                    family = "Savchuk",
                    role = c("aut", "cre"),
                    email = "olga.y.savchuk@gmail.com")
as necessary.

The Description field contains
  functions, <arXiv:1703.05157>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sebastien Haneuse <shaneuse@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastien",
                      family = "Haneuse",
                      role = c("aut", "cre"),
                      email = "shaneuse@hsph.harvard.edu"),
               person(given = "Takumi",
                      family = "Saegusa",
                      role = "aut"),
               person(given = "Nilanjan",
                      family = "Chaterjee",
                      role = "aut"),
               person(given = "Norman",
                      family = "Breslow",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xavier Domingo-Almenara <xavier.domingo@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xavier",
                    family = "Domingo-Almenara",
                    role = c("aut", "cre"),
                    email = "xavier.domingo@urv.cat")
as necessary.
Maintainer: ‘Aaron Wolen <aaron@wolen.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
osf_refresh.html:47:1 (osf_refresh.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Brodie Gaslam <brodie.gaslam@yahoo.com>’

Found the following (possibly) invalid file URI:
  URI: ./Introduction.html
    From: inst/doc/nse-fun.html
Maintainer: ‘Xiaoyao Yin <yinxy1992@sina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaoyao",
                    family = "Yin",
                    role = c("aut", "cre"),
                    email = "yinxy1992@sina.com")
as necessary.
Found the following HTML validation problems:
osqpSettings.html:154:1 (osqpSettings.Rd:75): Warning: missing </ul> before </div>
Maintainer: ‘Adrian Staempfli <adrian.staempfli@ost.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Staempfli",
                      role = c("aut", "cre"),
                      email = "adrian.staempfli@ost.ch"),
               person(given = "Christoph",
                      family = "Strauss",
                      role = "aut"))
as necessary.
Maintainer: ‘Zardad Khan <zardadkhan@awkum.edu.pk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zardad",
                      family = "Khan",
                      role = c("aut", "cre"),
                      email = "zardadkhan@awkum.edu.pk"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Osama",
                      family = "Mahmoud",
                      role = "aut"),
               person(given = "Werner",
                      family = "Adler",
                      role = "aut"),
               person(family = "Miftahuddin",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcus Young <M.A.Young@soton.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) otp_create_surface.Rd:33: Lost braces; missing escapes or markup?
    33 | The file will be named surface_{id}.tiff, with {id} replaced by the OTP id assigned
       |                                ^
checkRd: (-1) otp_create_surface.Rd:33: Lost braces; missing escapes or markup?
    33 | The file will be named surface_{id}.tiff, with {id} replaced by the OTP id assigned
       |                                                ^
Found the following HTML validation problems:
otp_check_mode.html:46:1 (otp_check_mode.Rd:10): Warning: missing </ul> before </div>
otp_check_params.html:50:1 (otp_check_params.Rd:12): Warning: missing </ul> before </div>
otp_from_epoch.html:50:1 (otp_from_epoch.Rd:12): Warning: missing </ul> before </div>
otp_is_date.html:46:1 (otp_is_date.Rd:10): Warning: missing </ul> before </div>
otp_is_time.html:46:1 (otp_is_time.Rd:10): Warning: missing </ul> before </div>
otp_vector_match.html:50:1 (otp_vector_match.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) imput_cov.Rd:79: Lost braces
    79 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                     ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                                                   ^
checkRd: (-1) merge_dbs.Rd:179: Lost braces
   179 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^
Maintainer: ‘Pietro Coretto <pcoretto@unisa.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Junwen Xia <xiajunwen@ruc.edu.cn>’

The Description field contains
  available (Xia, J., Zhan, Z., Zhang, J. (2022) <arXiv:2210.05538>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
app_set_up.html:46:1 (app_set_up.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandra",
                    family = "Linz",
                    role = c("aut", "cre"),
                    email = "amlinz16@gmail.com")
as necessary.
Maintainer: ‘Finlay Campbell <finlaycampbell93@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Finlay Campbell <finlaycampbell93@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘zika_girardot_2015.Rd’:
    https://doi.org/10.2807/1560-7917.ES.2016.21.28.30283
Maintainer: ‘Rafael Pilliard Hellwig <rafael.taph@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) fmat.Rd:15: Lost braces; missing escapes or markup?
    15 | \item outcome: codes {I, P, R, NC, O, UH, UO, eUH, eUO, NE}
       |                      ^
checkRd: (-1) fmat.Rd:24: Lost braces; missing escapes or markup?
    24 | The input parameters given by the user are {I, P, R, NC, O, UH, UO} and
       |                                            ^
checkRd: (-1) fmat.Rd:25: Lost braces; missing escapes or markup?
    25 | the parameter 'e'. The parameter e is multiplied by {UH, UO} internally so as to
       |                                                     ^
checkRd: (-1) fmat.Rd:26: Lost braces; missing escapes or markup?
    26 | produce {eUH, eUO}.
       |         ^
checkRd: (-1) middleearth.Rd:14: Lost braces; missing escapes or markup?
    14 | \item \strong{code:} one of the outcome codes {I, P, R, NC, O, UH, UO, UH, UO, NE}
       |                                               ^
Found the following HTML validation problems:
validate_outliermbc_gmm.html:46:1 (validate_outliermbc_gmm.Rd:10): Warning: missing </ul> before </div>
validate_outliermbc_lcwm.html:46:1 (validate_outliermbc_lcwm.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Andres Missiego Manjon <andres.missiego@edu.uah.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andres", "Missiego"),
                      family = "Manjon",
                      role = c("aut", "cre"),
                      email = "andres.missiego@edu.uah.es"),
               person(given = c("Juan", "Jose", "Cuadrado"),
                      family = "Gallego",
                      role = "aut"))
as necessary.
Maintainer: ‘Antony Unwin <unwin@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antony",
                    family = "Unwin",
                    role = c("aut", "cre"),
                    email = "unwin@math.uni-augsburg.de")
as necessary.
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukasz",
                    family = "Komsta",
                    role = c("aut", "cre"),
                    email = "lukasz.komsta@umlub.pl")
as necessary.
Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
                      email = "jmbeauli@uark.edu"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
Found the following HTML validation problems:
config_extensions.html:46:1 (config_extensions.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
generate_contrast.html:64:1 (generate_contrast.Rd:24): Warning: missing </ul> before </div>
phi.html:50:1 (phi.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘owid.R’
Found the following HTML validation problems:
find_cities_by_bbox.html:52:1 (find_cities_by_bbox.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calcurve_plot.html:63:1 (calcurve_plot.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
OX_default.html:77:1 (OX_default.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Kevin", "C."),
                      family = "Johnson",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
oz-states.html:52:1 (oz-states.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
suppresser.html:46:1 (suppresser.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.package.html:55:1 (as.package.Rd:10): Warning: missing </ul> before </div>
update_deps.html:51:1 (update_deps.Rd:10): Warning: missing </ul> before </div>
use_directory.html:57:1 (use_directory.Rd:15): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes
Found the following HTML validation problems:
add_plugin_clean.html:59:1 (add_plugin_clean.Rd:16): Warning: missing </ul> before </div>
add_plugin_html.html:54:1 (add_plugin_html.Rd:14): Warning: missing </ul> before </div>
ease_lit.html:46:1 (ease_lit.Rd:10): Warning: missing </ul> before </div>
jsdoc.html:54:1 (jsdoc.Rd:16): Warning: missing </ul> before </div>
mockup.html:54:1 (mockup.Rd:23): Warning: missing </ul> before </div>
npm_run.html:46:1 (npm_run.Rd:10): Warning: missing </ul> before </div>
npx.html:46:1 (npx.Rd:10): Warning: missing </ul> before </div>
set_npm.html:49:1 (set_npm.Rd:10): Warning: missing </ul> before </div>
set_yarn.html:49:1 (set_yarn.Rd:10): Warning: missing </ul> before </div>
use_loader_file.html:47:1 (use_loader_file.Rd:10): Warning: missing </ul> before </div>
use_loader_pug.html:46:1 (use_loader_pug.Rd:10): Warning: missing </ul> before </div>
use_loader_svelte.html:46:1 (use_loader_svelte.Rd:10): Warning: missing </ul> before </div>
use_loader_ts.html:46:1 (use_loader_ts.Rd:10): Warning: missing </ul> before </div>
use_tailwind.html:47:1 (use_tailwind.Rd:10): Warning: missing </ul> before </div>
yarn_run.html:46:1 (yarn_run.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Marion Brandolini-Bunlon <marion.brandolini-bunlon@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marion",
                      family = "Brandolini-Bunlon",
                      role = c("aut", "cre"),
                      email = "marion.brandolini-bunlon@inra.fr"),
               person(given = "Stephanie",
                      family = "Bougeard",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Petera",
                      role = "aut"),
               person(given = "Estelle",
                      family = "Pujos-Guillot",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ginv.html:56:1 (ginv.Rd:22): Warning: missing </ul> before </div>
inertie.html:50:1 (inertie.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
install_local.html:59:1 (install_local.Rd:16): Warning: missing </ul> before </div>
packrat-mode.html:83:1 (packrat-mode.Rd:40): Warning: missing </ul> before </div>
repos_create.html:56:1 (repos_create.Rd:15): Warning: missing </ul> before </div>
repos_upload.html:59:1 (repos_upload.Rd:19): Warning: missing </ul> before </div>
snapshotImpl.html:125:1 (snapshotImpl.Rd:66): Warning: missing </ul> before </div>
unbundle.html:59:1 (unbundle.Rd:17): Warning: missing </ul> before </div>
unused_packages.html:51:1 (unused_packages.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
p_set_cranrepo.html:46:1 (p_set_cranrepo.Rd:10): Warning: missing </ul> before </div>
print.p_version_diff.html:51:1 (print.p_version_diff.Rd:12): Warning: missing </ul> before </div>
print.search_any.html:51:1 (print.search_any.Rd:12): Warning: missing </ul> before </div>
print.wide_table.html:55:1 (print.wide_table.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Matthew Hutchinson <matthewhutchinson15@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Antonio"),
                      family = "Balbuena",
                      role = "aut",
                      email = "j.a.balbuena@uv.es"),
               person(given = "Timothee",
                      family = "Poisot",
                      role = "aut",
                      email = "tim@poisotlab.io"),
               person(given = "Matthew",
                      family = "Hutchinson",
                      role = c("aut", "cre"),
                      email = "matthewhutchinson15@gmail.com"),
               person(given = c("Fernando", "Cagua;", "see", "PLoS", "ONE", "Balbuena", "et", "al", "2013"),
                      family = "<https://doi.org/10.1371/journal.pone.0061048>",
                      role = "aut",
                      email = "https://doi.org/10.1371/journal.pone.0061048"))
as necessary.
checkRd: (-1) residuals_paco.Rd:10: Escaped LaTeX specials: \$
Maintainer: ‘Ye Henry Li <hlowl2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ye", "Henry"),
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "hlowl2@gmail.com"),
               person(given = "Dangna",
                      family = "Li",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
MINetworkPlot_topEdges.html:50:1 (MINetworkPlot_topEdges.Rd:12): Warning: missing </ul> before </div>
MINetwork_simplified_topEdges.html:50:1 (MINetwork_simplified_topEdges.Rd:12): Warning: missing </ul> before </div>
constellationPlot.html:71:1 (constellationPlot.Rd:23): Warning: missing </ul> before </div>
getRepresentativeNetworks.html:59:1 (getRepresentativeNetworks.Rd:17): Warning: missing </ul> before </div>
outputNetworks_topEdges_matrix.html:54:1 (outputNetworks_topEdges_matrix.Rd:14): Warning: missing </ul> before </div>
outputRepresentativeNetworks_topEdges.html:55:1 (outputRepresentativeNetworks_topEdges.Rd:15): Warning: missing </ul> before </div>
refineSubpopulationLabels.html:59:1 (refineSubpopulationLabels.Rd:17): Warning: missing </ul> before </div>
runElbowPointAnalysis.html:71:1 (runElbowPointAnalysis.Rd:23): Warning: missing </ul> before </div>
samplePass.html:67:1 (samplePass.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
available_packages.html:46:1 (available_packages.Rd:10): Warning: missing </ul> before </div>
read_cran_file.html:58:1 (read_cran_file.Rd:16): Warning: missing </ul> before </div>
standard_args.html:174:1 (standard_args.Rd:83): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:324:1 (inst/NEWS.Rd:156): Warning: missing </ul> before </div>
NEWS.html:67:1 (inst/NEWS.Rd:30): Warning: <h4> anchor "Changed" already defined
NEWS.html:90:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "Changed" already defined
NEWS.html:114:1 (inst/NEWS.Rd:53): Warning: <h4> anchor "Changed" already defined
NEWS.html:132:1 (inst/NEWS.Rd:62): Warning: <h4> anchor "Fixed" already defined
NEWS.html:147:1 (inst/NEWS.Rd:70): Warning: <h4> anchor "Changed" already defined
NEWS.html:180:1 (inst/NEWS.Rd:86): Warning: <h4> anchor "Changed" already defined
NEWS.html:195:1 (inst/NEWS.Rd:94): Warning: <h4> anchor "Added" already defined
NEWS.html:206:1 (inst/NEWS.Rd:99): Warning: <h4> anchor "Changed" already defined
NEWS.html:224:1 (inst/NEWS.Rd:108): Warning: <h4> anchor "Changed" already defined
NEWS.html:289:1 (inst/NEWS.Rd:142): Warning: <h4> anchor "Updates" already defined
NEWS.html:310:1 (inst/NEWS.Rd:152): Warning: <h4> anchor "Added" already defined
Maintainer: ‘Marina Evangelou <m.evangelou@ic.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marina",
                    family = "Evangelou",
                    role = c("aut", "cre"),
                    email = "m.evangelou@ic.ac.uk")
as necessary.
Maintainer: ‘Steve Haroz <painbow@steveharoz.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steve",
                    family = "Haroz",
                    role = c("aut", "cre"),
                    email = "painbow@steveharoz.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/steveharoz/painbow/issues/new
which should likely be
  https://github.com/steveharoz/painbow/issues/new/issues
instead.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Stephane Champely <champely@univ-lyon1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephane",
                    family = "Champely",
                    role = c("aut", "cre"),
                    email = "champely@univ-lyon1.fr")
as necessary.
Found the following HTML validation problems:
pairsD3Output.html:54:1 (pairsD3Output.Rd:14): Warning: missing </ul> before </div>
renderPairsD3.html:54:1 (renderPairsD3.Rd:14): Warning: missing </ul> before </div>
savePairs.html:59:1 (savePairs.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Catherine Hurley <catherine.hurley@mu.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "C.B.",
                      family = "Hurley",
                      role = "aut"),
               person(given = "R.W.",
                      family = "Oldford",
                      role = "aut"),
               person(given = "Catherine",
                      family = "Hurley",
                      role = "cre",
                      email = "catherine.hurley@mu.ie"))
as necessary.
'library' or 'require' calls not declared from:
  ‘gclus’ ‘irr’ ‘seriation’
Found the following HTML validation problems:
path_cor.html:50:1 (path_cor.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.pairwiseCI.html:55:1 (print.pairwiseCI.Rd:16): Warning: missing </ul> before </div>
print.pairwiseTest.html:55:1 (print.pairwiseTest.Rd:13): Warning: missing </ul> before </div>
print.summary.pairwiseCI.html:51:1 (print.summary.pairwiseCI.Rd:13): Warning: missing </ul> before </div>
print.summary.pairwiseTest.html:51:1 (print.summary.pairwiseTest.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
logLik.pers.html:59:1 (logLik.pers.Rd:16): Warning: missing </ul> before </div>
lrtest.pers.html:50:1 (lrtest.pers.Rd:12): Warning: missing </ul> before </div>
plot.grm.html:124:1 (plot.grm.Rd:57): Warning: missing </ul> before </div>
plot.pair.html:104:1 (plot.pair.Rd:45): Warning: missing </ul> before </div>
plot.pairSE.html:114:1 (plot.pairSE.Rd:51): Warning: missing </ul> before </div>
plot.pers.html:109:1 (plot.pers.Rd:48): Warning: missing </ul> before </div>
plot.rfa.html:104:1 (plot.rfa.Rd:45): Warning: missing </ul> before </div>
residuals.pers.html:59:1 (residuals.pers.Rd:16): Warning: missing </ul> before </div>
summary.grm.html:55:1 (summary.grm.Rd:14): Warning: missing </ul> before </div>
summary.pair.html:55:1 (summary.pair.Rd:14): Warning: missing </ul> before </div>
summary.pairS.html:55:1 (summary.pairS.Rd:14): Warning: missing </ul> before </div>
summary.pairSE.html:55:1 (summary.pairSE.Rd:14): Warning: missing </ul> before </div>
summary.pairwiseSepRel.html:51:1 (summary.pairwiseSepRel.Rd:12): Warning: missing </ul> before </div>
summary.pers.html:59:1 (summary.pers.Rd:16): Warning: missing </ul> before </div>
summary.q3.html:55:1 (summary.q3.Rd:14): Warning: missing </ul> before </div>
summary.rfa.html:55:1 (summary.rfa.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) MICS2014Ch.Rd:296: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Ch.Rd:297: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:214: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:215: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:109: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:110: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:336: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:337: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018bh.Rd:88: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018bh.Rd:89: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018fs.Rd:308: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018fs.Rd:309: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:362: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:363: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:70: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:243: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:244: Lost braces in \enumerate; meant \describe ?
Found the following HTML validation problems:
faq.html:192:1 (faq.Rd:163): Warning: missing </ul> before </div>
features.html:207:1 (features.Rd:122): Warning: missing </ul> before </div>
get-started.html:867:1 (get-started.Rd:826): Warning: missing </ul> before </div>
install.html:172:1 (install.Rd:97): Warning: missing </ul> before </div>
package-dependency-types.html:131:1 (package-dependency-types.Rd:10): Warning: missing </ul> before </div>
pak-config.html:246:1 (pak-config.Rd:52): Warning: missing </ul> before </div>
pak_package_sources.html:708:1 (pak_package_sources.Rd:15): Warning: missing </ul> before </div>
sysreqs.html:715:1 (sysreqs.Rd:676): Warning: missing </ul> before </div>
Found the following HTML validation problems:
lat_bins.html:74:1 (lat_bins.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
arguments.html:119:1 (arguments.Rd:60): Warning: missing </ul> before </div>
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "timcdlucas@gmail.com"),
               person(given = "Anjali",
                      family = "Goswami",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
PaleoPopModel.html:219:1 (PaleoPopModel.Rd:177): Warning: <h5> anchor "Usage" already defined
PaleoPopModel.html:225:1 (PaleoPopModel.Rd:181): Warning: <h5> anchor "Returns" already defined
PaleoPopModel.html:242:1 (PaleoPopModel.Rd:190): Warning: <h5> anchor "Usage" already defined
PaleoPopModel.html:248:1 (PaleoPopModel.Rd:194): Warning: <h5> anchor "Arguments" already defined
PaleoRegion.html:146:1 (PaleoRegion.Rd:104): Warning: <h5> anchor "Usage" already defined
PaleoRegion.html:152:1 (PaleoRegion.Rd:108): Warning: <h5> anchor "Arguments" already defined
PaleoRegion.html:182:1 (PaleoRegion.Rd:124): Warning: <h5> anchor "Usage" already defined
PaleoRegion.html:188:1 (PaleoRegion.Rd:128): Warning: <h5> anchor "Returns" already defined
PaleoRegion.html:205:1 (PaleoRegion.Rd:137): Warning: <h5> anchor "Usage" already defined
PaleoRegion.html:211:1 (PaleoRegion.Rd:141): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘David W. Bapst <dwbapst@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "W."),
                      family = "Bapst",
                      role = c("aut", "cre"),
                      email = "dwbapst@gmail.com"),
               person(given = c("Peter", "J."),
                      family = "Wagner",
                      role = "aut"))
as necessary.
Maintainer: ‘Emil Hvitfeldt <emilhhvitfeldt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "AUTHORS"),
                      family = "file.",
                      role = "aut"),
               person(given = "Emil",
                      family = "Hvitfeldt",
                      role = "cre",
                      email = "emilhhvitfeldt@gmail.com"))
as necessary.
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Lucas",
                    role = c("aut", "cre"),
                    email = "timcdlucas@gmail.com")
as necessary.
Maintainer: ‘Allison Horst <ahorst@ucsb.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
coef.palm.html:66:1 (coef.palm.Rd:21): Warning: missing </ul> before </div>
summary.palm.html:51:1 (summary.palm.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Heidi Seibold <heidi@seibold.co>’

The Description field contains
  found in Seibold, Hothorn, Zeileis (2016) <arXiv:1612.07498>. The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiaoyan Wang<xywang@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "xywang@ucla.edu"),
               person(given = "Gang",
                      family = "Li",
                      role = "aut"))
as necessary.

The Description field contains
  to Gang Li and Xiaoyan Wang (2016) <arXiv:1611.03063> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
is.AcousticEvent.html:46:1 (is.AcousticEvent.Rd:10): Warning: missing </ul> before </div>
is.AcousticStudy.html:46:1 (is.AcousticStudy.Rd:10): Warning: missing </ul> before </div>
is.PAMpalSettings.html:46:1 (is.PAMpalSettings.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joseph G Kreke <jkreke2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "G"),
                      family = "Kreke",
                      role = c("aut", "cre"),
                      email = "jkreke2@gmail.com"),
               person(given = "PhD;",
                      family = "Harris",
                      role = "aut"),
               person(given = c("Inc.", "Sangeet"),
                      family = "Khemlani",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research", "Laboratory.", "Greg"),
                      family = "Trafton",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research"),
                      family = "Laboratory.",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
Citation.html:74:1 (Citation.Rd:28): Warning: missing </ul> before </div>
ListAttributes.html:61:1 (ListAttributes.Rd:21): Warning: missing </ul> before </div>
filter.html:58:1 (filter.Rd:16): Warning: missing </ul> before </div>
set_pandoc_path.html:47:1 (set_pandoc_path.Rd:11): Warning: missing </ul> before </div>
utility_functions.html:65:1 (utility_functions.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Jing Peng <jing.peng@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jing",
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "jing.peng@uconn.edu")
as necessary.
Found the following HTML validation problems:
distances.html:48:1 (distances.Rd:11): Warning: missing </ul> before </div>
estimates.html:52:1 (estimates.Rd:13): Warning: missing </ul> before </div>
extract.html:50:1 (extract.Rd:12): Warning: missing </ul> before </div>
get_unrefined_balance.html:46:1 (get_unrefined_balance.Rd:10): Warning: missing </ul> before </div>
plot_matched_set.html:93:1 (plot_matched_set.Rd:39): Warning: missing </ul> before </div>
sub-.matched.set.html:59:1 (sub-.matched.set.Rd:16): Warning: missing </ul> before </div>
weights.html:48:1 (weights.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-modifyOther.html:58:1 (dot-modifyOther.Rd:16): Warning: missing </ul> before </div>
dot-modifySelf.html:58:1 (dot-modifySelf.Rd:16): Warning: missing </ul> before </div>
pfilterd-setter.html:78:1 (pfilterd-setter.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Jacob A. Long <jacob.long@sc.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/jacob-long/panelr
which should likely be
  https://github.com/jacob-long/panelr/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_panels.R’ ‘clean_raw.Rd’ ‘create_means.R’ ‘helper_functions.R’
    ‘panelsummary.R’ ‘panelsummary_raw.R’
checkRd: (-1) panelsummary.Rd:112: Lost braces; missing escapes or markup?
   112 | \item `"{exp(estimate) * std.error}"
       |         ^
checkRd: (-1) panelsummary_raw.Rd:90: Lost braces; missing escapes or markup?
    90 | \item `"{exp(estimate) * std.error}"
       |         ^
Found the following HTML validation problems:
add_panels.html:83:1 (add_panels.Rd:33): Warning: missing </ul> before </div>
add_panels_cfe.html:88:1 (add_panels_cfe.Rd:36): Warning: missing </ul> before </div>
check_dimensions_match.html:50:1 (check_dimensions_match.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.pvarfeols.html:51:1 (coef.pvarfeols.Rd:12): Warning: missing </ul> before </div>
coef.pvarhk.html:51:1 (coef.pvarhk.Rd:12): Warning: missing </ul> before </div>
knit_print.pvarfeols.html:51:1 (knit_print.pvarfeols.Rd:12): Warning: missing </ul> before </div>
knit_print.pvargmm.html:51:1 (knit_print.pvargmm.Rd:12): Warning: missing </ul> before </div>
knit_print.pvarhk.html:51:1 (knit_print.pvarhk.Rd:12): Warning: missing </ul> before </div>
knit_print.summary.pvarfeols.html:51:1 (knit_print.summary.pvarfeols.Rd:12): Warning: missing </ul> before </div>
knit_print.summary.pvargmm.html:51:1 (knit_print.summary.pvargmm.Rd:12): Warning: missing </ul> before </div>
knit_print.summary.pvarhk.html:51:1 (knit_print.summary.pvarhk.Rd:12): Warning: missing </ul> before </div>
plot.pvarstability.html:51:1 (plot.pvarstability.Rd:12): Warning: missing </ul> before </div>
print.pvarfeols.html:51:1 (print.pvarfeols.Rd:12): Warning: missing </ul> before </div>
print.pvargmm.html:51:1 (print.pvargmm.Rd:12): Warning: missing </ul> before </div>
print.pvarhk.html:51:1 (print.pvarhk.Rd:12): Warning: missing </ul> before </div>
print.pvarstability.html:51:1 (print.pvarstability.Rd:12): Warning: missing </ul> before </div>
print.summary.pvarfeols.html:51:1 (print.summary.pvarfeols.Rd:12): Warning: missing </ul> before </div>
print.summary.pvargmm.html:51:1 (print.summary.pvargmm.Rd:12): Warning: missing </ul> before </div>
print.summary.pvarhk.html:51:1 (print.summary.pvarhk.Rd:12): Warning: missing </ul> before </div>
summary.pvarfeols.html:51:1 (summary.pvarfeols.Rd:12): Warning: missing </ul> before </div>
summary.pvargmm.html:51:1 (summary.pvargmm.Rd:12): Warning: missing </ul> before </div>
summary.pvarhk.html:51:1 (summary.pvarhk.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pg_cache_clear-defunct.html:46:1 (pg_cache_clear-defunct.Rd:10): Warning: missing </ul> before </div>
pg_cache_list-defunct.html:46:1 (pg_cache_list-defunct.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Cathrine Ulla Jensen <cuj@ifro.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toke", "Emil"),
                      family = "Panduro",
                      role = "aut",
                      email = "tepp@ifro.ku.dk"),
               person(given = c("Cathrine", "Ulla"),
                      family = "Jensen",
                      role = c("aut", "cre"),
                      email = "cuj@ifro.ku.dk"))
as necessary.
checkRd: (-1) hvidovre.Rd:11: Lost braces
    11 |     \item{\code{roof_tile}}{a numeric vector, roof_tile}{dummy, roof made out of tiles =1}
       |                                                         ^
checkRd: (-1) hvidovre.Rd:25: Lost braces
    25 |     \item{\code{railways}}{a numeric vector, railways}{distance to nearest railway in meters}
       |                                                       ^
checkRd: (-1) hvidovre.Rd:26: Lost braces
    26 |     \item{\code{nature_SLD}}{a numeric vector, nature_SLD}{distance to nearest nature area in meters}
       |                                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_control_form.R’ ‘mod_leaflet_map.R’
Found the following HTML validation problems:
gsPEN_cpp.html:88:1 (gsPEN_cpp.Rd:36): Warning: missing </ul> before </div>
gsPEN_sparse_cpp.html:88:1 (gsPEN_sparse_cpp.Rd:36): Warning: missing </ul> before </div>
gsfPEN_cpp.html:113:1 (gsfPEN_cpp.Rd:51): Warning: missing </ul> before </div>
gsfPEN_sparse_cpp.html:113:1 (gsfPEN_sparse_cpp.Rd:51): Warning: missing </ul> before </div>
Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "Joseph", "L."),
                      family = "Schafer",
                      role = "aut"),
               person(given = c("Jing", "hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Found the following HTML validation problems:
checklegal.html:50:1 (checklegal.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_effect_sizes.html:63:1 (add_effect_sizes.Rd:20): Warning: missing </ul> before </div>
apa_factorial_plot_single.html:74:1 (apa_factorial_plot_single.Rd:28): Warning: missing </ul> before </div>
beautify.html:56:1 (beautify.Rd:14): Warning: missing </ul> before </div>
canonize.html:55:1 (canonize.Rd:14): Warning: missing </ul> before </div>
corresponding_author_line.html:46:1 (corresponding_author_line.Rd:10): Warning: missing </ul> before </div>
defaults.html:54:1 (defaults.Rd:14): Warning: missing </ul> before </div>
escape_latex.html:55:1 (escape_latex.Rd:14): Warning: missing </ul> before </div>
fast_aggregate.html:60:1 (fast_aggregate.Rd:17): Warning: missing </ul> before </div>
hd_int.html:50:1 (hd_int.Rd:12): Warning: missing </ul> before </div>
localize.html:48:1 (localize.Rd:10): Warning: missing </ul> before </div>
print_scientific.html:46:1 (print_scientific.Rd:10): Warning: missing </ul> before </div>
sel.html:52:1 (sel.Rd:12): Warning: missing </ul> before </div>
sort_columns.html:47:1 (sort_columns.Rd:10): Warning: missing </ul> before </div>
strip_math_tags.html:50:1 (strip_math_tags.Rd:13): Warning: missing </ul> before </div>
validate.html:99:1 (validate.Rd:42): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:66:1 (inst/NEWS.Rd:24): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:82:1 (inst/NEWS.Rd:32): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:104:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:124:1 (inst/NEWS.Rd:52): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:135:1 (inst/NEWS.Rd:57): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:181:1 (inst/NEWS.Rd:79): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:199:1 (inst/NEWS.Rd:87): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:223:1 (inst/NEWS.Rd:101): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:242:1 (inst/NEWS.Rd:110): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:258:1 (inst/NEWS.Rd:120): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:274:1 (inst/NEWS.Rd:128): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:290:1 (inst/NEWS.Rd:137): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:320:1 (inst/NEWS.Rd:150): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:344:1 (inst/NEWS.Rd:160): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:370:1 (inst/NEWS.Rd:172): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:386:1 (inst/NEWS.Rd:180): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:402:1 (inst/NEWS.Rd:188): Warning: <h4> anchor "Bug-fixes" already defined
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
clusterRequire.html:50:1 (clusterRequire.Rd:12): Warning: missing </ul> before </div>
excludeFromList.html:50:1 (excludeFromList.Rd:12): Warning: missing </ul> before </div>
layoutEmail.html:51:1 (layoutEmail.Rd:12): Warning: missing </ul> before </div>
layoutErrorReport.html:52:1 (layoutErrorReport.Rd:12): Warning: missing </ul> before </div>
layoutParallel.html:51:1 (layoutParallel.Rd:12): Warning: missing </ul> before </div>
layoutSimple.html:50:1 (layoutSimple.Rd:12): Warning: missing </ul> before </div>
layoutStackTrace.html:50:1 (layoutStackTrace.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Erin Conlon <econlon@umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Miroshnikov",
                      role = "aut"),
               person(given = "Erin",
                      family = "Conlon",
                      role = c("aut", "cre"),
                      email = "econlon@umass.edu"))
as necessary.
Maintainer: ‘Thuc Duy Le <Thuc.Le@unisa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thuc", "Duy"),
                      family = "Le",
                      role = c("aut", "cre"),
                      email = "thuc.le@unisa.edu.au"),
               person(given = "Tao",
                      family = "Hoang",
                      role = "aut"),
               person(given = "Shu",
                      family = "Hu",
                      role = "aut"),
               person(given = "Liang",
                      family = "Zhang",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
predict.parameters_clusters.html:59:1 (predict.parameters_clusters.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
spectemp.html:70:1 (spectemp.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plotOptPath.html:110:1 (plotOptPath.Rd:58): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fix_column_names.html:50:1 (fix_column_names.Rd:12): Warning: missing </ul> before </div>
parse_opts.html:50:1 (parse_opts.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Samuel Wilson <samwilson303@gmail.com>’

The Description field contains
  al. <arXiv:1206.2944>.  The package allows the user to run scoring
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) returns.Rd:21: Lost braces; missing escapes or markup?
    21 |   \item{...}{Other options including {type} which refers to the
       |                                      ^
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"),
               person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) PPS.fit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forbes400.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forbes400.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:11: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
print.PGP_Model.html:51:1 (print.PGP_Model.Rd:12): Warning: missing </ul> before </div>
print.PPP_Model.html:51:1 (print.PPP_Model.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/parglm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexios Galanos <alexios@4dscape.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.LaTeX2item.html:58:1 (print.LaTeX2item.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rmd_chunk.html:73:1 (rmd_chunk.Rd:27): Warning: missing </ul> before </div>
rmd_code_block.html:73:1 (rmd_code_block.Rd:27): Warning: missing </ul> before </div>
rmd_code_block_literal.html:63:1 (rmd_code_block_literal.Rd:21): Warning: missing </ul> before </div>
rmd_fenced_div_open.html:58:1 (rmd_fenced_div_open.Rd:18): Warning: missing </ul> before </div>
rmd_heading.html:50:1 (rmd_heading.Rd:12): Warning: missing </ul> before </div>
rmd_inline_code.html:68:1 (rmd_inline_code.Rd:24): Warning: missing </ul> before </div>
rmd_markdown.html:46:1 (rmd_markdown.Rd:10): Warning: missing </ul> before </div>
rmd_raw_chunk.html:63:1 (rmd_raw_chunk.Rd:21): Warning: missing </ul> before </div>
rmd_shortcode.html:63:1 (rmd_shortcode.Rd:21): Warning: missing </ul> before </div>
rmd_span.html:63:1 (rmd_span.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Maintainer: ‘Marcela Nunez Lemus <marcela.nunez.lemus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marcela", "Nunez"),
                      family = "Lemus",
                      role = c("aut", "cre"),
                      email = "marcela.nunez.lemus@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Larissa", "Avila"),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H"),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘Annette Molinaro <annette.molinaro@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annette",
                      family = "Molinaro",
                      role = c("aut", "cre"),
                      email = "annette.molinaro@ucsf.edu"),
               person(given = "Adam",
                      family = "Olshen",
                      role = "aut",
                      email = "olshena@biostat.ucsf.edu"),
               person(given = "Karen",
                      family = "Lostritto",
                      role = "aut",
                      email = "karen.lostritto@yale.edu"),
               person(given = "Gregory",
                      family = "Ryslik",
                      role = "aut",
                      email = "gregory.ryslik@yale.edu"),
               person(given = "Steve",
                      family = "Weston",
                      role = "aut",
                      email = "stephen.weston@yale.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
dumpDSA.html:51:1 (dumpDSA.Rd:13): Warning: missing </ul> before </div>
predict.partDSA.html:56:1 (predict.partDSA.Rd:14): Warning: missing </ul> before </div>
print.partDSA.html:57:1 (print.partDSA.Rd:18): Warning: missing </ul> before </div>
trim.html:59:1 (trim.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Ben Derrick <ben.derrick@uwe.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Derrick",
                    role = c("aut", "cre"),
                    email = "ben.derrick@uwe.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘evolve.Rd’ ‘genesis.Rd’ ‘simulate.Rd’ ‘wield.Rd’
Maintainer: ‘Adam Clark <adam.tclark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "adam.tclark@gmail.com")
as necessary.
Maintainer: ‘David Weisman <David.Weisman@acm.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Weisman",
                      role = c("aut", "cre"),
                      email = "david.weisman@acm.org"),
               person(given = "Dan",
                      family = "Simovici",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
hits.html:48:1 (hits.Rd:13): Warning: missing </ul> before </div>
print_color.html:52:1 (print_color.Rd:19): Warning: missing </ul> before </div>
print_helpers.html:68:1 (print_helpers.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("cre", "aut"),
                      email = "normmatloff@gmail.com"),
               person(given = "Clark",
                      family = "Fitzgerald",
                      role = "aut",
                      email = "clarkfitzg@gmail.com"),
               person(given = c("with", "contributions", "by", "Alex"),
                      family = "Rumbaugh",
                      email = "aprumbaugh@ucdavis.edu"),
               person(given = "Hadley",
                      family = "Wickham",
                      email = "h.wickham@gmail.com"))
as necessary.
Found the following files/directories:
  ‘co2’ ‘co2.1’ ‘co2.2’ ‘co2s.1’ ‘co2s.2’ ‘ctm.1’ ‘ctm.2’ ‘m’ ‘m.1’
  ‘m.2’ ‘test’ ‘test.1’ ‘test.2’ ‘testa.1’ ‘testa.2’ ‘xfile.1’
  ‘xfile.2’
Found the following HTML validation problems:
forestplot.html:69:1 (forestplot.Rd:25): Warning: missing </ul> before </div>
get_ran_var.html:53:1 (get_ran_var.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-i.html:54:1 (dot-i.Rd:14): Warning: missing </ul> before </div>
extract.html:61:1 (extract.Rd:18): Warning: missing </ul> before </div>
format_field_matrix.html:61:1 (format_field_matrix.Rd:21): Warning: missing </ul> before </div>
parttime_logical.html:49:1 (parttime_logical.Rd:12): Warning: missing </ul> before </div>
trim.html:50:1 (trim.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Maintainer: ‘Yukun Zhang <yukzhang@ucalgary.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yukun",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "yukzhang@ucalgary.ca"),
               person(given = "Milad",
                      family = "Yavari",
                      role = "aut"),
               person(given = "Bob",
                      family = "Haennel",
                      role = "aut"),
               person(given = "Haocheng",
                      family = "Li",
                      role = c("aut", "ctb")))
as necessary.
Maintainer: ‘Zhiqiu Hu <zhiqiu.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhiqiu", "Hu;", "Shizhong", "Xu;", "Zhiquan", "Wang;", "Rongcai"),
                      family = "Yang",
                      role = "aut"),
               person(given = "Zhiqiu",
                      family = "Hu",
                      role = "cre",
                      email = "zhiqiu.hu@gmail.com"))
as necessary.
checkRd: (-1) PAS-package.Rd:30: Lost braces
    30 |     {\code{bin model}}{\cr Zhiqiu Hu, Zhiquan Wang, and Shizhong Xu (2012) An infinitesimal model for quantitative trait genomic value prediction. PloS ONE 7: e41336.}
       |                       ^
Maintainer: ‘Marco Chak Yan YU <marcocyyu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marco", "Chak", "Yan"),
                    family = "YU",
                    role = c("aut", "cre"),
                    email = "marcocyyu@gmail.com")
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Emmanuel Charpentier <emm.charpentier@free.fr>’

Found the following (possibly) invalid file URI:
  URI: emm.charpentier@free.fr
    From: man/patchSynctex-package.Rd
Found the following HTML validation problems:
create_HTML_report.html:70:1 (create_HTML_report.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Steven Andrew Culpepper <sculpepp@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
pmmFit.html:53:1 (pmmFit.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mockDisconnect.html:46:1 (mockDisconnect.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Seong Hyun Hwang <krshh1412@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seong", "Hyun"),
                      family = "Hwang",
                      role = c("aut", "cre"),
                      email = "krshh1412@gmail.com"),
               person(given = c("Rachel", "Myoung"),
                      family = "Moon",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
print.summary.pc_params.html:51:1 (print.summary.pc_params.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) plotHeat.Rd:113: Lost braces
   113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
       |     ^
Found the following HTML validation problems:
createPhenotype.html:170:1 (createPhenotype.Rd:90): Warning: missing </ul> before </div>
plotRasterstackAsImage.html:50:1 (plotRasterstackAsImage.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Chunqiao Luo <chunqiaoluo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
equivalent_at.html:56:1 (equivalent_at.Rd:19): Warning: missing </ul> before </div>
get_ree_internal.html:124:1 (get_ree_internal.Rd:73): Warning: missing </ul> before </div>
metabolic_row_wise.html:59:1 (metabolic_row_wise.Rd:23): Warning: missing </ul> before </div>
paired_equivalence_wrapper.html:94:1 (paired_equivalence_wrapper.Rd:42): Warning: missing </ul> before </div>
reconstruct_transitions.html:49:1 (reconstruct_transitions.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.list.struct.html:51:1 (as.list.struct.Rd:12): Warning: missing </ul> before </div>
merge_config.html:50:1 (merge_config.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dyfan Jones <dyfan.r.jones@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.aws.amazon.com/connect/latest/adminguide/historical-metrics-definitions.html##average-non-talk-time-historical
    From: man/connect_get_metric_data_v2.Rd
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Dyfan Jones <dyfan.r.jones@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.aws.amazon.com/kms/latest/developerguide/concepts.html##aws-managed-cmk
    From: man/kms_describe_key.Rd
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Hoffmann",
                      role = c("aut", "cre"),
                      email = "tjhoffm@gmail.com"),
               person(given = c("with", "contributions", "from", "Christoph"),
                      family = "Lange",
                      role = "aut",
                      email = "clange@hsph.harvard.edu"))
as necessary.
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Rampal", "S."),
                    family = "Etienne",
                    role = c("aut", "cre"),
                    email = "r.s.etienne@rug.nl")
as necessary.
checkRd: (-1) pbd_loglik.Rd:31: Lost braces
    31 |     \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:32: Lost braces
    32 |     \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:33: Lost braces
    33 |     \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:34: Lost braces
    34 |     \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:35: Lost braces
    35 |     \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:36: Lost braces
    36 |     \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
       |                    ^
checkRd: (-1) pbd_loglik.Rd:37: Lost braces
    37 |     \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}  
       |                    ^
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaodong",
                      family = "Luo",
                      role = "aut"),
               person(given = "Bo",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu",
                      comment = c(ORCID = "0000-0002-5893-0169")))
as necessary.
Maintainer: ‘Brenton Kenkel <brenton.kenkel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fortran", "code", "by", "Alan", "Genz.", "R", "code", "by", "Brenton"),
                      family = "Kenkel",
                      role = "aut"),
               person(given = c("based", "on", "Adelchi", "Azzalini's", "'mnormt'"),
                      family = "package.",
                      role = "aut"),
               person(given = "Brenton",
                      family = "Kenkel",
                      role = "cre",
                      email = "brenton.kenkel@gmail.com"))
as necessary.
Found the following HTML validation problems:
any_modcomp.html:56:1 (any_modcomp.Rd:22): Warning: missing </ul> before </div>
x2__modcomp.html:95:1 (x2__modcomp.Rd:46): Warning: missing </ul> before </div>
Maintainer: ‘Kevin kuang <kvn.kuang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Kuang",
                      role = c("aut", "cre"),
                      email = "kvn.kuang@mail.utoronto.ca",
                      comment = "aut"),
               person(given = "Quyu",
                      family = "Kong",
                      role = "aut",
                      comment = "ctb"),
               person(given = "Francesco",
                      family = "Napolitano",
                      role = "aut",
                      comment = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  perProb.Rd: pMvdc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
show-pbox.html:47:1 (show-pbox.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
File ‘PBSddesolve/libs/PBSddesolve.so’:
  Found non-API call to R: ‘FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
File ‘PBSmodelling/libs/PBSmodelling.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘swang1 <swang1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuangcai",
                      family = "Wang",
                      role = "aut"),
               person(family = "swang1",
                      role = "cre",
                      email = "swang1@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de",
                    comment = c(ORCID = "0000-0002-8226-3132"))
as necessary.
Found the following HTML validation problems:
get.pc.html:51:1 (get.pc.Rd:12): Warning: missing </ul> before </div>
hist_plot.html:52:1 (hist_plot.Rd:13): Warning: missing </ul> before </div>
manhattan_plot.html:68:1 (manhattan_plot.Rd:23): Warning: missing </ul> before </div>
ped2pcadapt.html:50:1 (ped2pcadapt.Rd:12): Warning: missing </ul> before </div>
print_convert.html:62:1 (print_convert.Rd:18): Warning: missing </ul> before </div>
qq_plot.html:50:1 (qq_plot.Rd:12): Warning: missing </ul> before </div>
read.pcadapt.html:96:1 (read.pcadapt.Rd:43): Warning: missing </ul> before </div>
score_plot.html:70:1 (score_plot.Rd:25): Warning: missing </ul> before </div>
scree_plot.html:52:1 (scree_plot.Rd:12): Warning: missing </ul> before </div>
vcf2pcadapt.html:57:1 (vcf2pcadapt.Rd:15): Warning: missing </ul> before </div>
vcf_convert.html:56:1 (vcf_convert.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Manuela Ott <manuela.c.ott@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘twoby2Calibrate.Rd’:
    https://doi.org/10.1080/01621459.2018.1469992
    https://doi.org/10.1111/insr.12307
checkRd: (-1) twoby2Calibrate.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:85-86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:87-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:97-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:104-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:108-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:111-116: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Elia Degiorgi <degioe@usi.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elia",
                      family = "Degiorgi",
                      role = c("aut", "cre"),
                      email = "degioe@usi.ch"),
               person(given = "Federico",
                      family = "Milan",
                      role = "aut"),
               person(given = "Davide",
                      family = "Zaramella",
                      role = "aut"),
               person(given = "Valerija",
                      family = "Stoeva",
                      role = "aut"))
as necessary.
Maintainer: ‘Pedro Fonseca <pedro.teles.fonseca@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Derek W. Brown <derek9@gwmail.gwu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Chavent <Marie.Chavent@u-bordeaux.fr>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘MFAmix.Rd’:
    \keyword{multivariate, mixed type data, data struc [TRUNCATED]
Maintainer: ‘Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
permutePval.html:77:1 (permutePval.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Yi-Hui Zhou <yihui_zhou@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi-Hui",
                    family = "Zhou",
                    role = c("aut", "cre"),
                    email = "yihui_zhou@ncsu.edu")
as necessary.
Maintainer: ‘Pariya Behrouzi <pariya.behrouzi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Willem",
                      family = "Kruijer",
                      role = "aut"),
               person(given = "Pariya",
                      family = "Behrouzi",
                      role = c("aut", "cre"),
                      email = "pariya.behrouzi@gmail.com"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"))
as necessary.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("B", "N"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
Found the following HTML validation problems:
pci_info.html:85:1 (pci_info.Rd:46): Warning: missing </ul> before </div>
Maintainer: ‘Christine Hohensinn <research@christinehohensinn.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christine",
                    family = "Hohensinn",
                    role = c("cre", "aut"),
                    email = "research@christinehohensinn.at")
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Tay",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stanford.edu"))
as necessary.

The Description field contains
  regression' <arXiv:1810.04651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrew Ying <aying9339@gmail.com>’

The Description field contains
  arXiv e-prints, arXiv-2009 <arXiv:2009.10982>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Krzysztof Bartoszek <krzbar@protonmail.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = c("aut", "cre"),
                      email = "krzbar@protonmail.ch"),
               person(given = "Pietro",
                      family = "Lio'",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) PCM_ABC.Rd:106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:108-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:114: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:117: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:205-207: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:208-211: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:212-216: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:221-224: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:225-228: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:229-231: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:232: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:233: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:234: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:235: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:236: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:237: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:238: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:239: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:240: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:58-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:67: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
PCMAbCdEf.html:96:1 (PCMAbCdEf.Rd:46): Warning: missing </ul> before </div>
PCMTreeEdgeTimes.html:46:1 (PCMTreeEdgeTimes.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘S. Varet <suzanne.varet@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "S.",
                    family = "Varet",
                    role = c("aut", "cre"),
                    email = "suzanne.varet@universite-paris-saclay.fr")
as necessary.
Maintainer: ‘Kristof Meers <kristof.meers+cran@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marlies",
                      family = "Vervloet",
                      role = c("aut", "cre")),
               person(given = "Henk",
                      family = "Kiers",
                      role = "aut"),
               person(given = "Eva",
                      family = "Ceulemans",
                      role = "ctb"),
               person(given = "Kristof",
                      family = "Meers",
                      role = "cre",
                      email = "kristof.meers+cran@kuleuven.be"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Lawrence G. Chillrud [aut, cre, cph] (<https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (<https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (<https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (<https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (<https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (<https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (00hj8s172)’
  Authors@R: ‘Lawrence G. Chillrud [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (ORCID: <https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (ORCID: <https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (ORCID: <https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (ORCID: <https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (ORCID: <https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (ROR: <https://ror.org/00hj8s172>)’
Found the following HTML validation problems:
mutate.names.matrix.p.null.html:54:1 (mutate.names.matrix.p.null.Rd:15): Warning: missing </ul> before </div>
select.pcpsmethod.html:49:1 (select.pcpsmethod.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) getPCRAData.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getPCRAData.Rd:29: Lost braces in \itemize; meant \describe ?
'::' or ':::' imports not declared from:
  ‘MASS’ ‘tensr’
'library' or 'require' calls not declared from:
  ‘MASS’ ‘facmodCS’ ‘fit.models’ ‘sandwich’
Maintainer: ‘Mahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Delia Bailey <delia.bailey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Delia",
                      family = "Bailey",
                      role = c("aut", "cre"),
                      email = "delia.bailey@gmail.com"),
               person(given = c("Jonathan", "N."),
                      family = "Katz",
                      role = "aut",
                      email = "jkatz@caltech.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jason Wilson <jason.wilson@biola.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Wilson",
                    role = c("aut", "cre"),
                    email = "jason.wilson@biola.edu")
as necessary.
Maintainer: ‘Aleksei Krasikov <krasikov.as@phystech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aleksei",
                    family = "Krasikov",
                    role = c("aut", "cre"),
                    email = "krasikov.as@phystech.edu")
as necessary.
Found the following HTML validation problems:
PeriodicTS_ts-class.html:34:1 (PeriodicTS_ts-class.Rd:17): Warning: <h3> anchor "Objects-from-the-Class" already defined
checkRd: (-1) pcvpcr.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
checkRd: (-1) pcvpls.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
Found the following HTML validation problems:
getCrossvalParams.html:50:1 (getCrossvalParams.Rd:12): Warning: missing </ul> before </div>
normalize.html:58:1 (normalize.Rd:18): Warning: missing </ul> before </div>
pcvreg.html:84:1 (pcvreg.Rd:34): Warning: missing </ul> before </div>
Found the following HTML validation problems:
summary.conjugate.html:51:1 (summary.conjugate.Rd:12): Warning: missing </ul> before </div>
summary.pcvrss.html:52:1 (summary.pcvrss.Rd:13): Warning: missing </ul> before </div>
Found the following significant warnings:
  ./rcpp_coxph.h:368:36: warning: 'from<unsigned int, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  ./rcpp_coxph.h:377:40: warning: 'from<unsigned int, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pda.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘Andreas M. Brandmaier <brandmaier@mpib-berlin.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andreas", "M."),
                    family = "Brandmaier",
                    role = c("aut", "cre"),
                    email = "brandmaier@mpib-berlin.mpg.de")
as necessary.

Found the following (possibly) invalid file URI:
  URI: openclipart.org
    From: man/complex.shapes.Rd
Maintainer: ‘Menardi Giovanna <menardi@stat.unipd.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jenny Farmer <jfarmer@carolina.rr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jenny",
                      family = "Farmer",
                      role = c("aut", "cre"),
                      email = "jfarmer@carolina.rr.com"),
               person(given = "Donald",
                      family = "Jacobs",
                      role = "aut",
                      email = "djacobs1@uncc.ecu"))
as necessary.
Found the following HTML validation problems:
extract_tables.html:107:1 (extract_tables.Rd:55): Warning: missing </ul> before </div>
format_text.html:100:1 (format_text.Rd:50): Warning: missing </ul> before </div>
Maintainer: ‘Jeffrey Wong <jeff.ct.wong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Wong",
                    role = c("aut", "cre"),
                    email = "jeff.ct.wong@gmail.com")
as necessary.
Maintainer: ‘J.F. Palomeque-Gonzalez <jfpalomeque.gonzalez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.F.",
                      family = "Palomeque-Gonzalez",
                      role = c("aut", "cre"),
                      email = "jfpalomeque.gonzalez@gmail.com"),
               person(given = "M.",
                      family = "San-Juan",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhenbang Wang <bruce1edward@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Cabrera",
                      role = "aut",
                      email = "xavier.cabrera@gmail.com"),
               person(given = "Fei",
                      family = "Wang",
                      role = "aut",
                      email = "cherry8177@gmail.com"),
               person(given = "Zhenbang",
                      family = "Wang",
                      role = "cre",
                      email = "bruce1edward@gmail.com"))
as necessary.
Maintainer: ‘Luca Belmonte <luca.belmonte@unimore.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luca",
                      family = "Belmonte",
                      role = c("aut", "cre"),
                      email = "luca.belmonte@unimore.it"),
               person(given = c("Sheref", "S."),
                      family = "Mansy",
                      role = "aut",
                      email = "sheref.mansy@unitn.it"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PdPDB.Rd’:
    \keyword{PDB,}
    \keyword{alignment,}
    \keyword{metal,}
    \keyword{metalloproteins,}
    \keyword{patterns,}
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
checkRd: (-1) embedded.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) embedded.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
checkRd: (-1) ensemble.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) ensemble.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
checkRd: (-1) staged.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) staged.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
Maintainer: ‘Yuanhui Xiao <xiao_yuanhui@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuanhui",
                    family = "Xiao",
                    role = c("aut", "cre"),
                    email = "xiao_yuanhui@hotmail.com")
as necessary.
checkRd: (-1) Peacock.test-package.Rd:28: Escaped LaTeX specials: \_
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toby", "Dylan"),
                      family = "Hocking",
                      role = c("aut", "cre"),
                      email = "toby.hocking@r-project.org"),
               person(given = "Guillem",
                      family = "Rigaill",
                      role = "aut"))
as necessary.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Hughes",
                    role = c("aut", "cre"),
                    email = "drjphughesjr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juha Karvanen <juha.karvanen@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Juha",
                    family = "Karvanen",
                    role = c("aut", "cre"),
                    email = "juha.karvanen@iki.fi")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
pedbp-defunct.html:74:1 (pedbp-defunct.Rd:40): Warning: missing </ul> before </div>
checkRd: (-1) variogramGuess.Rd:94: Lost braces
    94 | Method \code{"b"} was proposed by \doi{10.1016/0098-3004(95)00095-X}{Jian et al. (1996)} and
       |                                                                     ^
checkRd: (-1) variogramGuess.Rd:98: Lost braces
    98 | \doi{10.1016/j.cageo.2008.10.011}{Hiemstra et al. (2009)}.
       |                                  ^
checkRd: (-1) variogramGuess.Rd:100: Lost braces
   100 | Method \code{"d"} was developed by \doi{10.1007/s11004-012-9434-1}{Desassis & Renard (2012)}.
       |                                                                   ^
Found the following HTML validation problems:
plotModelSeries.html:173:1 (plotModelSeries.Rd:115): Warning: <h4> anchor "obj" already defined
plotModelSeries.html:191:1 (plotModelSeries.Rd:124): Warning: <h4> anchor "grid" already defined
plotModelSeries.html:217:1 (plotModelSeries.Rd:146): Warning: <h4> anchor "line" already defined
plotModelSeries.html:231:1 (plotModelSeries.Rd:156): Warning: <h4> anchor "arrange" already defined
plotModelSeries.html:260:1 (plotModelSeries.Rd:181): Warning: <h4> anchor "ind" already defined
Found the following HTML validation problems:
md_bond.html:71:1 (md_bond.Rd:23): Warning: missing </ul> before </div>
md_money.html:63:1 (md_money.Rd:19): Warning: missing </ul> before </div>
md_moneycn.html:63:1 (md_moneycn.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.nucleus.html:51:1 (print.nucleus.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
haplotype.html:152:1 (haplotype.Rd:99): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Qingyang Zhang <qz008@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "qz008@uark.edu"),
               person(given = "Yanchuan",
                      family = "Li",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PEGroupTesting-package.Rd’:
    \keyword{Group testing, maximum likelihood estimat [TRUNCATED]
Maintainer: ‘Stéphane Guerrier <stef.guerrier@gmail.com>’

The Description field contains
  methods proposed in Guerrier et al. (2023) <arXiv:2012.10745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniele Cuntrera <daniele.cuntrera@unipa.it>’

The Description field contains
  Muggeo, V. M. (2022) <arXiv:2212.08582>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Christian Schellhase <cschellhase@wiwi.uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Schellhase",
                    role = c("aut", "cre"),
                    email = "cschellhase@wiwi.uni-bielefeld.de")
as necessary.
checkRd: (-1) my.bspline.Rd:38: Escaped LaTeX specials: \$ \$ \$
Maintainer: ‘Andreas Groll <groll@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Groll",
                    role = c("aut", "cre"),
                    email = "groll@statistik.tu-dortmund.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘pencoxfrail.rd’:
    \keyword{Cox frailty model; LASSO; Penalization; T [TRUNCATED]
'library' or 'require' call not declared from: ‘mgcv’
Maintainer: ‘Christian Schellhase <christian.schellhase@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Schellhase",
                    role = c("aut", "cre"),
                    email = "christian.schellhase@gmx.net")
as necessary.
checkRd: (-1) my.bspline.Rd:21: Escaped LaTeX specials: \$ \$ \$ \$ \$ \$
checkRd: (-1) my.bspline.Rd:27: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) pendensity.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:57: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:82: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:96: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:100: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:105: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:109: Escaped LaTeX specials: \$
Maintainer: ‘Elena Geminiani <geminianielena@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yan Liu <yanliuresearch@gmail.com>’

The Description field contains
  (2019) <arXiv:1912.11703>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/penPHcure.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
AtA.html:46:1 (AtA.Rd:10): Warning: missing </ul> before </div>
eigenMatMult.html:48:1 (eigenMatMult.Rd:13): Warning: missing </ul> before </div>
manyouter.html:50:1 (manyouter.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-find_stable_bdb_bisquare.html:74:1 (dot-find_stable_bdb_bisquare.Rd:26): Warning: missing </ul> before </div>
dot-run_replicated_cv.html:82:1 (dot-run_replicated_cv.Rd:34): Warning: missing </ul> before </div>
print.nsoptim_metrics.html:51:1 (print.nsoptim_metrics.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Levi Waldron <lwaldron.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Levi",
                    family = "Waldron",
                    role = c("aut", "cre"),
                    email = "lwaldron.research@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nathan Sheffield <nathan@code.databio.org>’

The BugReports field in DESCRIPTION has
  https://github.com/pepkit/pepr
which should likely be
  https://github.com/pepkit/pepr/issues
instead.
Found the following HTML validation problems:
extract_ranked.html:61:1 (extract_ranked.Rd:15): Warning: missing </ul> before </div>
print.filterMS.html:51:1 (print.filterMS.Rd:12): Warning: missing </ul> before </div>
print.msDat.html:51:1 (print.msDat.Rd:12): Warning: missing </ul> before </div>
print.rankEN.html:51:1 (print.rankEN.Rd:12): Warning: missing </ul> before </div>
summary.binMS.html:54:1 (summary.binMS.Rd:12): Warning: missing </ul> before </div>
summary.filterMS.html:53:1 (summary.filterMS.Rd:12): Warning: missing </ul> before </div>
summary.rankEN.html:60:1 (summary.rankEN.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
diffcalc.html:50:1 (diffcalc.Rd:12): Warning: missing </ul> before </div>
nolesser.html:50:1 (nolesser.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jorge Cimentada <cimentadaj@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
DrawdownDeviation.html:54:1 (DrawdownDeviation.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
b_rcs.html:56:1 (b_rcs.Rd:14): Warning: missing </ul> before </div>
b_rcs_prime.html:51:1 (b_rcs_prime.Rd:12): Warning: missing </ul> before </div>
plot_per_mod.html:131:1 (plot_per_mod.Rd:54): Warning: missing </ul> before </div>
rcs_per.html:78:1 (rcs_per.Rd:34): Warning: missing </ul> before </div>
Maintainer: ‘Julien Idé <julien.ide.fr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Idé",
                    role = c("aut", "cre"),
                    email = "julien.ide.fr@gmail.com")
as necessary.
Found the following HTML validation problems:
add_left_sidebar.html:46:1 (add_left_sidebar.Rd:10): Warning: missing </ul> before </div>
add_reset_button.html:46:1 (add_reset_button.Rd:10): Warning: missing </ul> before </div>
add_right_sidebar.html:46:1 (add_right_sidebar.Rd:10): Warning: missing </ul> before </div>
remove_reset_button.html:46:1 (remove_reset_button.Rd:10): Warning: missing </ul> before </div>
ui_tooltip.html:55:1 (ui_tooltip.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Marie-Pierre Sylvestre <marie-pierre.sylvestre@umontreal.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie-Pierre",
                      family = "Sylvestre",
                      role = c("aut", "cre"),
                      email = "marie-pierre.sylvestre@umontreal.ca"),
               person(given = "Thad",
                      family = "Edens",
                      role = "aut"),
               person(given = "Todd",
                      family = "MacKenzie",
                      role = "aut"),
               person(given = "Michal",
                      family = "Abrahamowicz",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Laura Vicente-Gonzalez <laura20vg@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Laura",
                      family = "Vicente-Gonzalez",
                      role = c("aut", "cre"),
                      email = "laura20vg@usal.es"),
               person(given = c("Jose", "Luis"),
                      family = "Vicente-Villardon",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dot-onAttach.html:51:1 (dot-onAttach.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Fay",
                      role = "aut"),
               person(given = c("Michael", "P."),
                      family = "Fay",
                      role = "cre",
                      email = "mfay@niaid.nih.gov"))
as necessary.
Maintainer: ‘Alfonso Benitez-Paez <alfbenpa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alfonso",
                    family = "Benitez-Paez",
                    role = c("aut", "cre"),
                    email = "alfbenpa@gmail.com")
as necessary.
Maintainer: ‘Osama Abdalla <osama.abdalla@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Osama",
                    family = "Abdalla",
                    role = c("aut", "cre"),
                    email = "osama.abdalla@mail.utoronto.ca")
as necessary.
Maintainer: ‘Gabriel Kaiser <quantresearch.gk@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘perplexR-package.Rd’:
    \keyword{annotate;}
Found the following HTML validation problems:
API_Request.html:109:1 (API_Request.Rd:53): Warning: missing </ul> before </div>
execAddin.html:46:1 (execAddin.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Roozbeh Safshekan <rse@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Roozbeh",
                      family = "Safshekan",
                      role = c("aut", "cre"),
                      email = "rse@mit.edu"),
               person(given = "Rich",
                      family = "Nielsen",
                      role = "aut"))
as necessary.
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
HDtweedie_kfold_aug.html:82:1 (HDtweedie_kfold_aug.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.individual_treatment_effects.html:55:1 (print.individual_treatment_effects.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
update_core.html:68:1 (update_core.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Maintainer: ‘Kenneth B. Hoehn <perspectev@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  http://evolve.zoo.ox.ac.uk/Evolve/Perspectev.html.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘KM Gates <gateskm@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "KM",
                      family = "Gates",
                      role = c("aut", "cre"),
                      email = "gateskm@email.unc.edu"),
               person(given = "Zachary",
                      family = "Fisher",
                      role = "aut"),
               person(given = "Cara",
                      family = "Arizmendi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
is_Iterator.html:46:1 (is_Iterator.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Piotr Sobczyk <pj.sobczyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Sobczyk",
                      role = c("aut", "cre"),
                      email = "pj.sobczyk@gmail.com"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Malgorzata",
                      family = "Bogdan",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Fixed issues
Found the following HTML validation problems:
data_NorthernPike.html:67:1 (data_NorthernPike.Rd:19): Warning: missing </ul> before </div>
data_NorthernPike_tagloss.html:66:1 (data_NorthernPike_tagloss.Rd:19): Warning: missing </ul> before </div>
data_rodli.html:63:1 (data_rodli.Rd:17): Warning: missing </ul> before </div>
data_spas_harrison.html:59:1 (data_spas_harrison.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Aaron Schlegel <aaron@aaronschlegel.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Schlegel",
                    role = c("aut", "cre"),
                    email = "aaron@aaronschlegel.me")
as necessary.
Found the following HTML validation problems:
dot-Petfinder.class.html:196:1 (dot-Petfinder.class.Rd:118): Warning: missing </ul> before </div>
dot-Petfinder.class.html:80:1 (dot-Petfinder.class.Rd:35): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:94:1 (dot-Petfinder.class.Rd:44): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:108:1 (dot-Petfinder.class.Rd:53): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:145:1 (dot-Petfinder.class.Rd:85): Warning: <h5> anchor "Usage" already defined
dot-Petfinder.class.html:173:1 (dot-Petfinder.class.Rd:107): Warning: <h5> anchor "Usage" already defined
checkRd: (-1) read_PN.Rd:15: Lost braces
    15 | A code{\link{marked_petrinet}}
       |       ^
Found the following HTML validation problems:
Utils.html:82:1 (Utils.Rd:44): Warning: missing </ul> before </div>
enabled.html:46:1 (enabled.Rd:10): Warning: missing </ul> before </div>
enabled_transition.html:50:1 (enabled_transition.Rd:12): Warning: missing </ul> before </div>
execute.html:52:1 (execute.Rd:12): Warning: missing </ul> before </div>
final_marking.html:46:1 (final_marking.Rd:10): Warning: missing </ul> before </div>
initial_marking.html:46:1 (initial_marking.Rd:10): Warning: missing </ul> before </div>
marking.html:46:1 (marking.Rd:10): Warning: missing </ul> before </div>
nodes.html:46:1 (nodes.Rd:10): Warning: missing </ul> before </div>
parse_trace.html:50:1 (parse_trace.Rd:12): Warning: missing </ul> before </div>
parsel_trace.html:50:1 (parsel_trace.Rd:12): Warning: missing </ul> before </div>
part_of.html:50:1 (part_of.Rd:12): Warning: missing </ul> before </div>
post_set.html:50:1 (post_set.Rd:12): Warning: missing </ul> before </div>
pre_set.html:50:1 (pre_set.Rd:12): Warning: missing </ul> before </div>
render_PN.html:46:1 (render_PN.Rd:10): Warning: missing </ul> before </div>
visNetwork_from_PN.html:46:1 (visNetwork_from_PN.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
eco.xxx.regression.list.html:61:1 (eco.xxx.regression.list.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Washington Junger <wjunger@ims.uerj.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Washington",
                    family = "Junger",
                    role = c("aut", "cre"),
                    email = "wjunger@ims.uerj.br")
as necessary.
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘pgdraw-package.Rd’:
    \keyword{distribution,}
Maintainer: ‘Gul Inan <ginan@metu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = c("aut", "cre"),
                      email = "ginan@metu.edu.tr",
                      comment = "Lecturer, Middle East Technical University"),
               person(given = "Jianhui",
                      family = "Zhou",
                      role = "aut",
                      comment = "Associate Professor, University of Virginia"),
               person(given = "Lan",
                      family = "Wang",
                      role = "aut",
                      comment = c(ROR = "Professor", "University of Minnesota")))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PGEE-package.Rd’:
    \keyword{high-dimensional covariates, longitudinal [TRUNCATED]
checkRd: (-1) PatentsRD.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRD.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRDUS.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) DTV.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Yang Feng <yangfengstat@gmail.com>’

The Description field contains
  projection as introduced in Fan, Feng and Xia (2019)<arXiv:1501.01617>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’
  Authors@R: ‘J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’
Maintainer: ‘Gangcai Xie <gcxiester@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gangcai",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "gcxiester@gmail.com")
as necessary.
Maintainer: ‘Philip Barrett <pobarrett@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Barrett",
                    role = c("aut", "cre"),
                    email = "pobarrett@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pgsc.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Rui",
                      family = "Qin",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘animation.gif’
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Rui",
                      family = "Qin",
                      role = "aut"))
as necessary.
checkRd: (-1) PhageCocktail.Rd:100-103: Lost braces
   100 | "Result": {
       |           ^
checkRd: (-1) PhageCocktail.Rd:105-112: Lost braces
   105 | "BacteriaLysed": {
       |                  ^
Found the following HTML validation problems:
get_terms.html:60:1 (get_terms.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
broadcast_log.html:53:1 (broadcast_log.Rd:12): Warning: missing </ul> before </div>
check_pharmpy.html:46:1 (check_pharmpy.Rd:10): Warning: missing </ul> before </div>
create_report.html:52:1 (create_report.Rd:12): Warning: missing </ul> before </div>
install_pharmpy.html:50:1 (install_pharmpy.Rd:12): Warning: missing </ul> before </div>
install_pharmpy_devel.html:58:1 (install_pharmpy_devel.Rd:18): Warning: missing </ul> before </div>
print_fit_summary.html:50:1 (print_fit_summary.Rd:12): Warning: missing </ul> before </div>
print_log.html:46:1 (print_log.Rd:10): Warning: missing </ul> before </div>
reset_index.html:48:1 (reset_index.Rd:10): Warning: missing </ul> before </div>
reset_indices_results.html:46:1 (reset_indices_results.Rd:10): Warning: missing </ul> before </div>
write_results.html:60:1 (write_results.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Lu Zhang <luzhangstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "luzhangstat@gmail.com"),
               person(given = "Jun",
                      family = "Yin",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
patlist.display.html:71:1 (patlist.display.Rd:21): Warning: missing </ul> before </div>
print.summary.RunPRMD.html:53:1 (print.summary.RunPRMD.Rd:12): Warning: missing </ul> before </div>
print.summary.SimPRMD.html:51:1 (print.summary.SimPRMD.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jun Yin <vivien.jyin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Yin",
                      role = c("aut", "cre"),
                      email = "vivien.jyin@gmail.com"),
               person(given = "Yu",
                      family = "Du",
                      role = "aut"),
               person(given = "Sumithra",
                      family = "Mandrekar",
                      role = "aut"))
as necessary.
checkRd: (-1) rosePlotsAct.Rd:19: Lost braces; missing escapes or markup?
    19 | A \code{plotly} {htmlwidget} with rose plots for locomotor activity.
       |                 ^
checkRd: (-1) rosePlotsSleep.Rd:19: Lost braces; missing escapes or markup?
    19 | #' @return A \code{plotly} {htmlwidget} with rose plots for sleep data.
       |                            ^
Found the following HTML validation problems:
check_reward.html:51:1 (check_reward.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.html:51:1 (as.data.frame.Rd:12): Warning: missing </ul> before </div>
as.matrix.html:52:1 (as.matrix.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Zhili Qiao <zlqiao@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhili",
                    family = "Qiao",
                    role = c("aut", "cre"),
                    email = "zlqiao@iastate.edu")
as necessary.
Maintainer: ‘Jesse Hemerik <jesse.hemerik@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "jesse.hemerik@wur.nl"),
               person(given = "Livio",
                      family = "Finos",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Doktor <daniel.doktor@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Doktor",
                      role = c("aut", "cre"),
                      email = "daniel.doktor@ufz.de"))
as necessary.
Maintainer: ‘Maximilian Lange <maximilian.lange@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maximilian",
                    family = "Lange",
                    role = c("aut", "cre"),
                    email = "maximilian.lange@ufz.de")
as necessary.
Maintainer: ‘Koen Hufkens <koen.hufkens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bijan",
                      family = "Seyednasrollah",
                      role = c("aut", "cre"),
                      email = "bijan.s.nasr@gmail.com"),
               person(given = c("Jennifer", "J."),
                      family = "Swenson",
                      role = "aut"),
               person(given = "Jean-Christophe",
                      family = "Domec",
                      role = "aut"),
               person(given = c("James", "S."),
                      family = "Clark",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
f_goal2.html:78:1 (f_goal2.Rd:28): Warning: missing </ul> before </div>
find_season.peaks.html:56:1 (find_season.peaks.Rd:21): Warning: missing </ul> before </div>
lambda_vcurve.html:72:1 (lambda_vcurve.Rd:28): Warning: missing </ul> before </div>
plot_phenofit.html:85:1 (plot_phenofit.Rd:35): Warning: missing </ul> before </div>
plot_season.html:92:1 (plot_season.Rd:40): Warning: missing </ul> before </div>
process_phenofit.html:76:1 (process_phenofit.Rd:32): Warning: missing </ul> before </div>
rcpp_season_filter.html:68:1 (rcpp_season_filter.Rd:26): Warning: missing </ul> before </div>
season_input.html:55:1 (season_input.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
FitDoubleLogBeck.html:102:1 (FitDoubleLogBeck.Rd:47): Warning: missing </ul> before </div>
FitDoubleLogElmore.html:96:1 (FitDoubleLogElmore.Rd:43): Warning: missing </ul> before </div>
Maintainer: ‘Maximilian Lange <maximilian.lange@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joerg",
                      family = "Schaber",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Lange",
                      role = "cre",
                      email = "maximilian.lange@ufz.de"))
as necessary.
checkRd: (-1) connectedSets.Rd:27: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:29: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:31: Escaped LaTeX specials: \_ \_
checkRd: (-1) maxConnectedSet.Rd:35: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:37: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:39: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:41: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:45: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:47: Escaped LaTeX specials: \_ \_
Found the following HTML validation problems:
cohortDoc.html:40:1 (cohortDoc.Rd:7): Warning: missing </ul> before </div>
directoryDoc.html:40:1 (directoryDoc.Rd:7): Warning: missing </ul> before </div>
expectationsDoc.html:40:1 (expectationsDoc.Rd:7): Warning: missing </ul> before </div>
matchedDoc.html:42:1 (matchedDoc.Rd:9): Warning: missing </ul> before </div>
populationSampleDoc.html:51:1 (populationSampleDoc.Rd:16): Warning: missing </ul> before </div>
resultDoc.html:40:1 (resultDoc.Rd:7): Warning: missing </ul> before </div>
survivalDoc.html:40:1 (survivalDoc.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Hannah Meyer <hannah.v.meyer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
read_lines.html:54:1 (read_lines.Rd:14): Warning: missing </ul> before </div>
testNumerics.html:60:1 (testNumerics.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Janez Komelj <jkomelj@siol.net>’

The Description field contains
  <doi:10.4236/ajcm.2023.134026> (or reprint <arXiv:2312.00011> with
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ursula Neumann <ursula.neumann@uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nikolas",
                      family = "Rothe",
                      role = "aut"),
               person(given = "Ursula",
                      family = "Neumann",
                      role = c("aut", "cre"),
                      email = "ursula.neumann@uni-marburg.de"))
as necessary.
Maintainer: ‘John E. Kolassa <kolassa@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "E."),
                      family = "Kolassa",
                      role = c("aut", "cre"),
                      email = "kolassa@stat.rutgers.edu"),
               person(given = "Juan",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
andersenplot.html:46:1 (andersenplot.Rd:10): Warning: missing </ul> before </div>
arjasplot.html:70:1 (arjasplot.Rd:22): Warning: missing </ul> before </div>
compete.simulation.html:54:1 (compete.simulation.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘df_to_tier.R’
Maintainer: ‘Daniel R. McCloy <drmccloy@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "R."),
                    family = "McCloy",
                    role = c("aut", "cre"),
                    email = "drmccloy@uw.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘indo.Rd’:
    http://dx.doi.org/10.1121/1.4870068
  File ‘normVowels.Rd’:
    http://dx.doi.org/10.1016/0378-5955(90)90170-T
    http://dx.doi.org/10.1121/1.1912396
    http://dx.doi.org/10.1121/1.399849
  File ‘repulsiveForce.Rd’:
    http://dx.doi.org/10.1177/0023830914559234
    http://dx.doi.org/10.1145/378456.378457
Maintainer: ‘Santiago Barreda <sbarreda@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Santiago",
                    family = "Barreda",
                    role = c("aut", "cre"),
                    email = "sbarreda@ucdavis.edu")
as necessary.
Found the following HTML validation problems:
Trig.html:66:1 (Trig.Rd:26): Warning: missing </ul> before </div>
absorbance_spct.html:78:1 (absorbance_spct.Rd:29): Warning: missing </ul> before </div>
absorptance_spct.html:78:1 (absorptance_spct.Rd:29): Warning: missing </ul> before </div>
adaptive_smoothing.html:67:1 (adaptive_smoothing.Rd:25): Warning: missing </ul> before </div>
check_and_rename_vars.html:79:1 (check_and_rename_vars.Rd:33): Warning: missing </ul> before </div>
clean_spct.html:69:1 (clean_spct.Rd:22): Warning: missing </ul> before </div>
clear_photobio.cache.html:47:1 (clear_photobio.cache.Rd:11): Warning: missing </ul> before </div>
f_dispatcher_spct.html:55:1 (f_dispatcher_spct.Rd:14): Warning: missing </ul> before </div>
make_wl_consistent.html:54:1 (make_wl_consistent.Rd:12): Warning: missing </ul> before </div>
print.waveband.html:51:1 (print.waveband.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bake-par.R’ ‘bake.R’ ‘calculated-parameters.R’ ‘conductance.R’
    ‘constants.R’ ‘enviro-par.R’ ‘fit_aq_response.R’
    ‘fit_aq_response2.Rd’ ‘fit_photosynthesis.R’ ‘fit_r_light.R’
    ‘fit_r_light2.Rd’ ‘leaf-par.R’ ‘make_parameters.R’ ‘models.R’
    ‘parameter_names.R’ ‘photosynthesis.R’ ‘read_licor.R’
    ‘simulate_error.R’ ‘simulate_error.Rd’ ‘utils.R’
Found the following HTML validation problems:
calculated-parameters.html:46:1 (calculated-parameters.Rd:12): Warning: missing </ul> before </div>
required_variables.html:50:1 (required_variables.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
make_inheritance_checks.html:60:1 (make_inheritance_checks.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Jennifer Pohle <jennifer.pohle@uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jennifer",
                    family = "Pohle",
                    role = c("aut", "cre"),
                    email = "jennifer.pohle@uni-bielefeld.de")
as necessary.

The Description field contains
  hidden semi-Markov models. <arXiv:2101.09197>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Caterina Pisani <caterina.pisani@unisi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Caterina",
                    family = "Pisani",
                    role = c("aut", "cre"),
                    email = "caterina.pisani@unisi.it")
as necessary.
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
Maintainer: ‘John R. Stevens <john.r.stevens@usu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Conrad"),
                      family = "Stack",
                      role = "aut"),
               person(given = c("John", "R."),
                      family = "Stevens",
                      role = "cre",
                      email = "john.r.stevens@usu.edu"))
as necessary.
Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Francois Michonneau <francois.michonneau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R", "Hackathon", "et"),
                      family = "al.",
                      role = "aut",
                      comment = "alphabetically: Ben Bolker, Marguerite Butler,\n    Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut\n    Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara,\n    Emmanuel Paradis, Jim Regetz, Derrick Zwickl"),
               person(given = "Francois",
                      family = "Michonneau",
                      role = "cre",
                      email = "francois.michonneau@gmail.com"))
as necessary.
Found the following HTML validation problems:
as_tree-methods.html:54:1 (as_tree-methods.Rd:25): Warning: missing </ul> before </div>
phylocanvas-shiny.html:68:1 (phylocanvas-shiny.Rd:25): Warning: missing </ul> before </div>
phylocanvas.html:103:1 (phylocanvas.Rd:41): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_range_alpha.html:51:1 (check_range_alpha.Rd:12): Warning: missing </ul> before </div>
qr_solve_exact.html:58:1 (qr_solve_exact.Rd:16): Warning: missing </ul> before </div>
transform_shifts_values.html:62:1 (transform_shifts_values.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Shaun Wilkinson <shaunpwilkinson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ramon Diaz-Uriarte <rdiaz02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Diaz-Uriarte",
                      role = c("aut", "cre"),
                      email = "rdiaz@cnio.es"),
               person(given = "Theodore",
                      family = "Garland",
                      role = "aut"),
               person(family = "Jr",
                      role = "aut",
                      email = "theodore.garland@ucr.edu"))
as necessary.
checkRd: (-1) GarlandJanis.IC.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.IC.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:7: Escaped LaTeX specials: \&
Maintainer: ‘Xia Hua <xia.hua@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xia",
                      family = "Hua",
                      role = c("aut", "cre"),
                      email = "xia.hua@anu.edu.au"),
               person(given = "Lindell",
                      family = "Bromham",
                      role = "aut",
                      email = "lindell.bromham@anu.edu.au"))
as necessary.
Found the following HTML validation problems:
fpd.html:50:1 (fpd.Rd:12): Warning: missing </ul> before </div>
noto.html:50:1 (noto.Rd:12): Warning: missing </ul> before </div>
sscd.html:50:1 (sscd.Rd:12): Warning: missing </ul> before </div>
tars.html:50:1 (tars.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
show_warnings.html:48:1 (show_warnings.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
vcov.phylosem.html:55:1 (vcov.phylosem.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Julia Fukuyama <julia.fukuyama@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julia",
                    family = "Fukuyama",
                    role = c("aut", "cre"),
                    email = "julia.fukuyama@gmail.com")
as necessary.
Found the following HTML validation problems:
print.psgraphtest.html:51:1 (print.psgraphtest.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Found the following HTML validation problems:
dotplot.html:46:1 (dotplot.Rd:10): Warning: missing </ul> before </div>
gridplot.html:46:1 (gridplot.Rd:10): Warning: missing </ul> before </div>
kStarTest.html:54:1 (kStarTest.Rd:14): Warning: missing </ul> before </div>
kTest.html:54:1 (kTest.Rd:14): Warning: missing </ul> before </div>
layouterize.html:50:1 (layouterize.Rd:12): Warning: missing </ul> before </div>
layouterizeRatio.html:54:1 (layouterizeRatio.Rd:14): Warning: missing </ul> before </div>
mantelStat.html:50:1 (mantelStat.Rd:12): Warning: missing </ul> before </div>
moranTest.html:54:1 (moranTest.Rd:14): Warning: missing </ul> before </div>
multiplot.phylo4d.html:282:1 (multiplot.phylo4d.Rd:165): Warning: missing </ul> before </div>
plot.phylosimsignal.html:94:1 (plot.phylosimsignal.Rd:41): Warning: missing </ul> before </div>
print.graphclust.html:51:1 (print.graphclust.Rd:12): Warning: missing </ul> before </div>
print.phylosimsignal.html:51:1 (print.phylosimsignal.Rd:12): Warning: missing </ul> before </div>
white2red.html:46:1 (white2red.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Beer <dlbeer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Beer",
                      role = c("aut", "cre"),
                      email = "dlbeer@gmail.com"),
               person(given = "Anusha",
                      family = "Beer",
                      role = "aut"))
as necessary.
Maintainer: ‘Alan Grafen <alan.grafen@sjc.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Grafen",
                    role = c("aut", "cre"),
                    email = "alan.grafen@sjc.ox.ac.uk")
as necessary.
Found the following significant warnings:
  cor_phylo.cpp:76:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  cor_phylo.cpp:81:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  cor_phylo.cpp:89:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following HTML validation problems:
family.communityPGLMM.html:53:1 (family.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
model.frame.communityPGLMM.html:62:1 (model.frame.communityPGLMM.Rd:22): Warning: missing </ul> before </div>
nobs.communityPGLMM.html:56:1 (nobs.communityPGLMM.Rd:15): Warning: missing </ul> before </div>
print.communityPGLMM.html:55:1 (print.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
print.pglmm_compare.html:55:1 (print.pglmm_compare.Rd:14): Warning: missing </ul> before </div>
simulate.communityPGLMM.html:66:1 (simulate.communityPGLMM.Rd:21): Warning: missing </ul> before </div>
summary.communityPGLMM.html:55:1 (summary.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
summary.pglmm_compare.html:55:1 (summary.pglmm_compare.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘J. Dustin Tracy <tracy@chapman.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Dustin"),
                      family = "Tracy",
                      role = c("aut", "cre"),
                      email = "tracy@chapman.edu"),
               person(given = "Zhiyi",
                      family = "Xu",
                      role = "aut"),
               person(given = "Sari",
                      family = "Acra",
                      role = "aut"),
               person(given = c("Kong", "Y."),
                      family = "Chen",
                      role = "aut"),
               person(given = c("Maciej", "S."),
                      family = "Buchowski",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Donnelly",
                      role = "aut"))
as necessary.
checkRd: (-1) pa-internal.Rd:11: Lost braces
    11 | code{l2df}: convert list to data.frame
       |     ^
checkRd: (-1) pa-internal.Rd:14: Lost braces
    14 | code{convertTZ}: force a new timezone on datetime
       |     ^
checkRd: (-1) pa-internal.Rd:16: Lost braces
    16 | code{createTime}: create datetime variable
       |     ^
checkRd: (-1) pa-internal.Rd:18: Lost braces
    18 | code{addDayIndex}: create ID_day variable from timestamp
       |     ^
Maintainer: ‘Steven W. Kembel <steve.kembel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Steven", "W."),
                      family = "Kembel",
                      role = c("aut", "cre"),
                      email = "steve.kembel@gmail.com"),
               person(given = c("David", "D."),
                      family = "Ackerly",
                      role = "aut",
                      email = "dackerly@berkeley.edu"),
               person(given = c("Simon", "P."),
                      family = "Blomberg",
                      role = "aut",
                      email = "s.blomberg1@uq.edu.au"),
               person(given = c("Will", "K."),
                      family = "Cornwell",
                      role = "aut",
                      email = "cornwell@zoology.ubc.ca"),
               person(given = c("Peter", "D."),
                      family = "Cowan",
                      role = "aut",
                      email = "pdc@berkeley.edu"),
               person(given = c("Matthew", "R."),
                      family = "Helmus",
                      role = "aut",
                      email = "mrhelmus@wisc.edu"),
               person(given = "Helene",
                      family = "Morlon",
                      role = "aut",
                      email = "morlon.helene@gmail.com"),
               person(given = c("Campbell", "O."),
                      family = "Webb",
                      role = "aut",
                      email = "cwebb@oeb.harvard.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) IvesGodfray.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Kcalc.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) phylocom.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylosignal.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) sample2matrix.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) traitgram.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) utility.Rd:37: Escaped LaTeX specials: \$ \$
Maintainer: ‘Chun Pan <chunpan2003@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chun",
                    family = "Pan",
                    role = c("aut", "cre"),
                    email = "chunpan2003@hotmail.com")
as necessary.
Maintainer: ‘Matt Deppe <deppemj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Deppe",
                    role = c("aut", "cre"),
                    email = "deppemj@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exr-read.R’ ‘exr-types-read.R’ ‘exr-write.R’ ‘utils.R’
Maintainer: ‘Andrew G. Chapple <agc6@rice.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G."),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "agc6@rice.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘piecenorm.R’
Found the following HTML validation problems:
normalisr.html:198:1 (normalisr.Rd:218): Warning: <h5> anchor "Usage" already defined
normalisr.html:214:1 (normalisr.Rd:228): Warning: <h5> anchor "Usage" already defined
normalisr.html:231:1 (normalisr.Rd:239): Warning: <h5> anchor "Usage" already defined
normalisr.html:247:1 (normalisr.Rd:249): Warning: <h5> anchor "Usage" already defined
normalisr.html:253:1 (normalisr.Rd:253): Warning: <h5> anchor "Arguments" already defined
normalisr.html:276:1 (normalisr.Rd:266): Warning: <h5> anchor "Usage" already defined
normalisr.html:282:1 (normalisr.Rd:270): Warning: <h5> anchor "Arguments" already defined
normalisr.html:305:1 (normalisr.Rd:283): Warning: <h5> anchor "Usage" already defined
normalisr.html:321:1 (normalisr.Rd:293): Warning: <h5> anchor "Usage" already defined
normalisr.html:327:1 (normalisr.Rd:297): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
as.psem.html:50:1 (as.psem.Rd:12): Warning: missing </ul> before </div>
cbind_fill.html:48:1 (cbind_fill.Rd:12): Warning: missing </ul> before </div>
evaluateClasses.html:46:1 (evaluateClasses.Rd:10): Warning: missing </ul> before </div>
getDAG.html:46:1 (getDAG.Rd:10): Warning: missing </ul> before </div>
print.anova.psem.html:51:1 (print.anova.psem.Rd:12): Warning: missing </ul> before </div>
print.basisSet.html:51:1 (print.basisSet.Rd:12): Warning: missing </ul> before </div>
print.multigroup.psem.html:51:1 (print.multigroup.psem.Rd:12): Warning: missing </ul> before </div>
print.psem.html:51:1 (print.psem.Rd:12): Warning: missing </ul> before </div>
print.summary.psem.html:51:1 (print.summary.psem.Rd:12): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
deprecated.html:68:1 (deprecated.Rd:22): Warning: missing </ul> before </div>
extra_cols.html:63:1 (extra_cols.Rd:19): Warning: missing </ul> before </div>
new_tbl_format_setup.html:110:1 (new_tbl_format_setup.Rd:49): Warning: missing </ul> before </div>
scale_x_num.html:219:1 (scale_x_num.Rd:117): Warning: missing </ul> before </div>
tbl_nrow.html:51:1 (tbl_nrow.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.cima.html:61:1 (print.cima.Rd:18): Warning: missing </ul> before </div>
print.pima.html:61:1 (print.pima.Rd:18): Warning: missing </ul> before </div>
print.pima_tau2h.html:56:1 (print.pima_tau2h.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
confint.pim.html:66:1 (confint.pim.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Michael",
                      family = "Yan",
                      role = "aut"))
as necessary.
Maintainer: ‘Danilo Freire <danilofreire@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
cache_browse.html:71:1 (cache_browse.Rd:17): Warning: missing </ul> before </div>
custom-pins.html:89:1 (custom-pins.Rd:40): Warning: missing </ul> before </div>
new_board.html:74:1 (new_board.Rd:30): Warning: missing </ul> before </div>
pin_default_name.html:50:1 (pin_default_name.Rd:12): Warning: missing </ul> before </div>
pin_exists.html:55:1 (pin_exists.Rd:15): Warning: missing </ul> before </div>
pin_log.html:46:1 (pin_log.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
bin_chopper.html:54:1 (bin_chopper.Rd:14): Warning: missing </ul> before </div>
bindividual_alpha.html:50:1 (bindividual_alpha.Rd:12): Warning: missing </ul> before </div>
contiguize_intervals.html:68:1 (contiguize_intervals.Rd:24): Warning: missing </ul> before </div>
flatten_cp_bin_intervals.html:50:1 (flatten_cp_bin_intervals.Rd:12): Warning: missing </ul> before </div>
minq_to_alpha.html:50:1 (minq_to_alpha.Rd:12): Warning: missing </ul> before </div>
pinterval_bcbootstrap.html:110:1 (pinterval_bcbootstrap.Rd:48): Warning: missing </ul> before </div>
weights_calculator.html:50:1 (weights_calculator.Rd:12): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Brenton M. Wiernik [cre, aut] (<https://orcid.org/0000-0001-9560-6336>, @bmwiernik)’
  Authors@R: ‘Brenton M. Wiernik [cre, aut] (ORCID: <https://orcid.org/0000-0001-9560-6336>, Twitter: @bmwiernik)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aliases.Rd’ ‘bind.Rd’
Maintainer: ‘Michael Sweeting <mjs212@medschl.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Sweeting",
                    role = c("aut", "cre"),
                    email = "mjs212@medschl.cam.ac.uk")
as necessary.
Maintainer: ‘Sahil Seth <me@sahilseth.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Houston", "R"),
                      family = "Users",
                      role = "aut"),
               person(given = "Neeraj",
                      family = "Tandon",
                      role = "aut"),
               person(given = "Ed",
                      family = "Goodwin",
                      role = "aut"),
               person(given = c("Ju", "Yeong"),
                      family = "Kim",
                      role = "aut"),
               person(given = "Sahil",
                      family = "Seth",
                      role = c("aut", "cre"),
                      email = "me@sahilseth.com"))
as necessary.
Found the following HTML validation problems:
make_list.html:46:1 (make_list.Rd:10): Warning: missing </ul> before </div>
make_output.html:46:1 (make_output.Rd:10): Warning: missing </ul> before </div>
splitlisttodf.html:46:1 (splitlisttodf.Rd:10): Warning: missing </ul> before </div>
splitmultistrtolist.html:46:1 (splitmultistrtolist.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alex Ioannides <alex.ioannides@yahoo.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Ioannides",
                    role = c("aut", "cre"),
                    email = "alex.ioannides@yahoo.co.uk")
as necessary.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Found the following HTML validation problems:
piqp_model.html:305:1 (piqp_model.Rd:188): Warning: missing </ul> before </div>
piqp_model.html:140:1 (piqp_model.Rd:81): Warning: <h5> anchor "Usage" already defined
piqp_model.html:146:1 (piqp_model.Rd:85): Warning: <h5> anchor "Returns" already defined
piqp_model.html:163:1 (piqp_model.Rd:94): Warning: <h5> anchor "Usage" already defined
piqp_model.html:178:1 (piqp_model.Rd:107): Warning: <h5> anchor "Arguments" already defined
piqp_model.html:221:1 (piqp_model.Rd:140): Warning: <h5> anchor "Usage" already defined
piqp_model.html:237:1 (piqp_model.Rd:150): Warning: <h5> anchor "Usage" already defined
piqp_model.html:253:1 (piqp_model.Rd:160): Warning: <h5> anchor "Usage" already defined
piqp_model.html:259:1 (piqp_model.Rd:164): Warning: <h5> anchor "Arguments" already defined
piqp_model.html:282:1 (piqp_model.Rd:177): Warning: <h5> anchor "Usage" already defined
piqp_model.html:288:1 (piqp_model.Rd:181): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Lars Van Cutsem <lars.vancutsem@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lars",
                    family = "Van Cutsem",
                    role = c("aut", "cre"),
                    email = "lars.vancutsem@hotmail.com")
as necessary.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Duncan",
                      family = "Garmonsway",
                      role = "ctb"),
               person(given = "Colin",
                      family = "Hirsch",
                      role = "cph"),
               person(given = "Daniel",
                      family = "Frey",
                      role = "cph"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Leonardo Egidi <legidi@units.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leonardo",
                      family = "Egidi",
                      role = c("aut", "cre"),
                      email = "legidi@units.it"),
               person(given = "Roberta",
                      family = "Pappadà",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Pauli",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘extract_col.Rd’ ‘na2empty.Rd’ ‘omit_na_cols.Rd’ ‘omit_na_rows.Rd’
    ‘pivot.R’ ‘pivot.Rd’ ‘utils.R’ ‘validate_col.Rd’
Maintainer: ‘Martin Stingl <martin.stingl@dfv.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Stingl",
                    role = c("aut", "cre"),
                    email = "martin.stingl@dfv.de")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:71:1 (inst/NEWS.Rd:36): Warning: missing </ul> before </div>
checkRd: (-1) get_pixels.Rd:27-29: Lost braces
    27 | if (interactive()) {
       |                    ^
Found the following HTML validation problems:
get_pixels.html:73:1 (get_pixels.Rd:29): Warning: missing </ul> before </div>
checkRd: (-1) sprinkle_colnames.Rd:26-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sprinkle_colnames.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:63-68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:69-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:74-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:78-83: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
chain.html:46:1 (chain.Rd:10): Warning: missing </ul> before </div>
compoundAssignment.html:47:1 (compoundAssignment.Rd:10): Warning: missing </ul> before </div>
knit_print.dust.html:59:1 (knit_print.dust.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_DQC.html:60:1 (add_DQC.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eun-Kyung",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "lee.eunk@gmail.com"),
               person(given = "Hye-sun",
                      family = "Cho",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
needs_compile.html:48:1 (needs_compile.Rd:11): Warning: missing </ul> before </div>
pkg_has_src.html:46:1 (pkg_has_src.Rd:10): Warning: missing </ul> before </div>
pkg_links_to_rcpp.html:48:1 (pkg_links_to_rcpp.Rd:13): Warning: missing </ul> before </div>
without_compiler.html:54:1 (without_compiler.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
call_with_callback.html:57:1 (call_with_callback.Rd:15): Warning: missing </ul> before </div>
cmc__update_replica_pkgs.html:50:1 (cmc__update_replica_pkgs.Rd:12): Warning: missing </ul> before </div>
cmc__update_replica_rds.html:54:1 (cmc__update_replica_rds.Rd:14): Warning: missing </ul> before </div>
parse_installed.html:157:1 (parse_installed.Rd:85): Warning: missing </ul> before </div>
Found the following HTML validation problems:
assert_that.html:75:1 (assert_that.Rd:28): Warning: missing </ul> before </div>
collapse.html:52:1 (collapse.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Found the following HTML validation problems:
as_pkgdown.html:52:1 (as_pkgdown.Rd:13): Warning: missing </ul> before </div>
build_favicons.html:60:1 (build_favicons.Rd:12): Warning: missing </ul> before </div>
build_redirects.html:67:1 (build_redirects.Rd:13): Warning: missing </ul> before </div>
build_site_github_pages.html:93:1 (build_site_github_pages.Rd:30): Warning: missing </ul> before </div>
check_pkgdown.html:68:1 (check_pkgdown.Rd:13): Warning: missing </ul> before </div>
clean.html:58:1 (clean.Rd:17): Warning: missing </ul> before </div>
deploy_site_github.html:113:1 (deploy_site_github.Rd:44): Warning: missing </ul> before </div>
deploy_to_branch.html:91:1 (deploy_to_branch.Rd:39): Warning: missing </ul> before </div>
preview_site.html:58:1 (preview_site.Rd:15): Warning: missing </ul> before </div>
render_page.html:86:1 (render_page.Rd:32): Warning: missing </ul> before </div>
Found the following HTML validation problems:
download_files_with_md5_mismatch.html:63:1 (download_files_with_md5_mismatch.Rd:21): Warning: missing </ul> before </div>
make_pgk_cache_subdir_for_all_relative_files.html:50:1 (make_pgk_cache_subdir_for_all_relative_files.Rd:12): Warning: missing </ul> before </div>
make_pgk_cache_subdir_for_relative_file.html:50:1 (make_pgk_cache_subdir_for_relative_file.Rd:12): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘buildPackageGraph.Rd’ ‘collectFunNames.Rd’ ‘functions.r’
    ‘plotPackageGraph.Rd’ ‘utils.r’
Found the following HTML validation problems:
check_dep_version.html:51:1 (check_dep_version.Rd:13): Warning: missing </ul> before </div>
check_suggested.html:54:1 (check_suggested.Rd:14): Warning: missing </ul> before </div>
is_dev_package.html:47:1 (is_dev_package.Rd:10): Warning: missing </ul> before </div>
load_code.html:51:1 (load_code.Rd:12): Warning: missing </ul> before </div>
load_data.html:46:1 (load_data.Rd:10): Warning: missing </ul> before </div>
load_dll.html:46:1 (load_dll.Rd:10): Warning: missing </ul> before </div>
run_pkg_hook.html:52:1 (run_pkg_hook.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Meta-Lina Spohn <metalina.spohn@stat.math.ethz.ch>’

The Description field contains
  Michel et al. (2021) <arXiv:2109.10150>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Francois Deslandes <francois.deslandes@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jade",
                      family = "Giguelay",
                      role = "aut"),
               person(given = "Francois",
                      family = "Deslandes",
                      role = "cre",
                      email = "francois.deslandes@inra.fr"))
as necessary.
Found the following HTML validation problems:
auc_integrate.html:94:1 (auc_integrate.Rd:42): Warning: missing </ul> before </div>
print.PKNCAconc.html:74:1 (print.PKNCAconc.Rd:29): Warning: missing </ul> before </div>
print.PKNCAdata.html:51:1 (print.PKNCAdata.Rd:12): Warning: missing </ul> before </div>
summary.PKNCAdata.html:53:1 (summary.PKNCAdata.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
analytical_eqn_wrapper.html:54:1 (analytical_eqn_wrapper.Rd:14): Warning: missing </ul> before </div>
calc_dydP.html:58:1 (calc_dydP.Rd:16): Warning: missing </ul> before </div>
check_iov_specification.html:57:1 (check_iov_specification.Rd:14): Warning: missing </ul> before </div>
check_mixture_model.html:50:1 (check_mixture_model.Rd:12): Warning: missing </ul> before </div>
check_obs_input.html:48:1 (check_obs_input.Rd:12): Warning: missing </ul> before </div>
create_event_table.html:88:1 (create_event_table.Rd:36): Warning: missing </ul> before </div>
get_fixed_parameters.html:49:1 (get_fixed_parameters.Rd:10): Warning: missing </ul> before </div>
get_t_obs_from_regimen.html:73:1 (get_t_obs_from_regimen.Rd:27): Warning: missing </ul> before </div>
is_newer_package.html:52:1 (is_newer_package.Rd:13): Warning: missing </ul> before </div>
lower_triangle_mat_size.html:46:1 (lower_triangle_mat_size.Rd:10): Warning: missing </ul> before </div>
parse_obs_types.html:54:1 (parse_obs_types.Rd:16): Warning: missing </ul> before </div>
shift_state_indices.html:52:1 (shift_state_indices.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Jaki <jaki.thomas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Jaki",
                      role = c("aut", "cre"),
                      email = "jaki.thomas@gmail.com"),
               person(given = c("Martin", "J."),
                      family = "Wolfsegger",
                      role = "aut",
                      email = "wolfseggerm@gmx.at"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kyun-Seop",
                      family = "Bae",
                      role = c("aut", "cre"),
                      email = "k@acr.kr"),
               person(given = c("Jee", "Eun"),
                      family = "Lee",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
getsubs.html:46:1 (getsubs.Rd:10): Warning: missing </ul> before </div>
mk_runlabel.html:51:1 (mk_runlabel.Rd:12): Warning: missing </ul> before </div>
perc.permutation.html:50:1 (perc.permutation.Rd:12): Warning: missing </ul> before </div>
perc.rank.html:50:1 (perc.rank.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Nan-Hung Hsieh <d99622005@ntu.edu.tw>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
pksim.html:65:1 (pksim.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Davi Castro-Tavares <davi.tavares@leibniz-zmt.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Erick Marroquin <ericksuhel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erick",
                    family = "Marroquin",
                    role = c("aut", "cre"),
                    email = "ericksuhel@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘User_manual_for_planningML.Rmd’ using rmarkdown

Quitting from User_manual_for_planningML.Rmd:161-165 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `auc()`:
! length(x) == length(unique(x)) is not TRUE
---
Backtrace:
    ▆
 1. └─planningML::samplesize(...)
 2.   └─base::replicate(...)
 3.     └─base::sapply(...)
 4.       └─base::lapply(X = X, FUN = FUN, ...)
 5.         └─planningML (local) FUN(X[[i]], ...)
 6.           └─planningML (local) HCT.simulation(...)
 7.             └─MESS::auc(x = 1 - TNR.grid, y = TPR.grid, type = "spline")
 8.               └─base::stopifnot(length(x) == length(unique(x)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'User_manual_for_planningML.Rmd' failed with diagnostics:
length(x) == length(unique(x)) is not TRUE
--- failed re-building ‘User_manual_for_planningML.Rmd’

SUMMARY: processing the following file failed:
  ‘User_manual_for_planningML.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Dan Kelley <Dan.Kelley@Dal.Ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Kelley",
                      role = c("aut", "cre"),
                      email = "Dan.Kelley@Dal.Ca"),
               person(given = "Frank",
                      family = "Schmitt",
                      role = "aut",
                      email = "frankschmitt@gmx.de"))
as necessary.
Found the following HTML validation problems:
check.tokens.html:50:1 (check.tokens.Rd:12): Warning: missing </ul> before </div>
sub-sub-plan-method.html:59:1 (sub-sub-plan-method.Rd:16): Warning: missing </ul> before </div>
sub-subset-plan-method.html:63:1 (sub-subset-plan-method.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
PhotosynTuzet.html:70:1 (PhotosynTuzet.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Yves Rozenholc <yves.rozenholc@parisdescartes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yves",
                      family = "Rozenholc",
                      role = c("aut", "cre"),
                      email = "yves.rozenholc@parisdescartes.fr"),
               person(given = "Nicolas",
                      family = "Pécuchet",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Laurent-Puig",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘P2Run.csv’ ‘P2Run.html’ ‘P2Run.png’
Found the following HTML validation problems:
check_plate_input.html:50:1 (check_plate_input.Rd:12): Warning: missing </ul> before </div>
is_1536.html:46:1 (is_1536.Rd:10): Warning: missing </ul> before </div>
plate_effect.html:52:1 (plate_effect.Rd:12): Warning: missing </ul> before </div>
plate_map_multiple.html:51:1 (plate_map_multiple.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) one_design.Rd:125-126: Lost braces
   125 | function serves for the purpose of spot-testing for any pre-specified {n,
       |                                                                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘VDJ_build.R’
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson",
                      role = c("aut", "cre"),
                      email = "alec_stephenson@hotmail.com"),
               person(given = "Jeff",
                      family = "Sonas.",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_season_form.R’
Maintainer: ‘JungJun Lee <ljjoj@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "JungJun",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "ljjoj@korea.ac.kr"),
               person(given = "Jae-Hwan",
                      family = "Jhong",
                      role = "aut"),
               person(given = "Young-Rae",
                      family = "Cho",
                      role = "aut"),
               person(given = "SungHwan",
                      family = "Kim",
                      role = "aut"),
               person(given = "Ja-yong",
                      family = "Koo",
                      role = "aut"))
as necessary.
Maintainer: ‘Jason Sinnwell <sinnwell.jason@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J"),
                      family = "Schaid",
                      role = "aut"),
               person(given = "Jason",
                      family = "Sinnwell",
                      role = "cre",
                      email = "sinnwell.jason@mayo.edu"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pleiotest.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
xrsx_xrsy.html:58:1 (xrsx_xrsy.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.plfd.html:51:1 (print.plfd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dhammapal Bharne <dhammapalb@uohyd.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dhammapal",
                      family = "Bharne",
                      role = c("aut", "cre"),
                      email = "dhammapalb@uohyd.ac.in"),
               person(given = "Vaibhav",
                      family = "Vindal",
                      role = "aut"))
as necessary.
Maintainer: ‘Robert B. Gramacy <rbg@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "B."),
                    family = "Gramacy",
                    role = c("aut", "cre"),
                    email = "rbg@vt.edu")
as necessary.

The Description field contains
  (PL) following Gramacy & Polson (2011) <arXiv:0909.5262>.  The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
'library' or 'require' call not declared from: ‘MASS’
Found the following HTML validation problems:
set_pliman_viewer.html:46:1 (set_pliman_viewer.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) check_hwe.Rd:103: Lost braces; missing escapes or markup?
   103 | {'ALL', 'AFF', 'UNAFF', 'ALL(QT)', 'ALL(NP)'}), A1 (Allele 1; usually minor),
       | ^
Found the following HTML validation problems:
testNumerics.html:60:1 (testNumerics.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Jonathan P. Weeks <weeksjp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonathan", "P."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeksjp@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhi Wei <zhiwei04@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhi", "Wei", "&", "Wenguang"),
                      family = "Sun",
                      role = "aut"),
               person(given = "Zhi",
                      family = "Wei",
                      role = "cre",
                      email = "zhiwei04@gmail.com"))
as necessary.
Found the following HTML validation problems:
fitted.PLmod.html:51:1 (fitted.PLmod.Rd:12): Warning: missing </ul> before </div>
fixef.PLmod.html:51:1 (fixef.PLmod.Rd:12): Warning: missing </ul> before </div>
iterPlot.html:46:1 (iterPlot.Rd:10): Warning: missing </ul> before </div>
plot.PLmod.html:51:1 (plot.PLmod.Rd:12): Warning: missing </ul> before </div>
predict.PLmod.html:55:1 (predict.PLmod.Rd:14): Warning: missing </ul> before </div>
print.PLmod.html:55:1 (print.PLmod.Rd:14): Warning: missing </ul> before </div>
print.summary.PLmod.html:55:1 (print.summary.PLmod.Rd:14): Warning: missing </ul> before </div>
ranef.PLmod.html:51:1 (ranef.PLmod.Rd:12): Warning: missing </ul> before </div>
residuals.PLmod.html:51:1 (residuals.PLmod.Rd:12): Warning: missing </ul> before </div>
simulate.PLmod.html:51:1 (simulate.PLmod.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plmm_fit.html:128:1 (plmm_fit.Rd:60): Warning: missing </ul> before </div>
Maintainer: ‘Euloge Clovis Kenne Pagui <kenne@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Euloge", "Clovis", "Kenne"),
                      family = "Pagui",
                      role = c("aut", "cre"),
                      email = "kenne@stat.unipd.it"),
               person(given = "Antonio",
                      family = "Canale",
                      role = "aut"),
               person(given = "Alan",
                      family = "Genz",
                      role = "ctb"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "ctb"))
as necessary.
checkRd: (-1) delta2a.Rd:21: Lost braces; missing escapes or markup?
    21 | delta_k = log(a_k - a_{k+1})
       |                       ^
checkRd: (-1) ordprob.mple.Rd:29: Lost braces
    29 | logical. If code{TRUE} all the q variable are assumed to have the same mean.
       |                 ^
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot3D.html:40:1 (plot3D.Rd:73): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Olivia Cheronet <cheronetolivia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olivia",
                    family = "Cheronet",
                    role = c("aut", "cre"),
                    email = "cheronetolivia@gmail.com")
as necessary.
Found the following HTML validation problems:
print.ggplotdap.html:51:1 (print.ggplotdap.Rd:12): Warning: missing </ul> before </div>
print.plotdap.html:51:1 (print.plotdap.Rd:12): Warning: missing </ul> before </div>
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(plotDK)
  > 
  > test_check("plotDK")
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plotDK.R:67:5'): The returned plot has the correct labels ────
  c("x", "y", "group", "subgroup", "text", "fill") (`actual`) and names(labels) (`expected`) don't have the same values.
  * Only in `actual`: "x", "y", "group", "subgroup", "text", "fill"
  
  ── Failure ('test-plotDK.R:72:5'): The returned plot has the correct labels ────
  labels$fill not equal to "test_label".
  target is NULL, current is character
  ── Failure ('test-plotDK.R:81:5'): The returned plot has the correct labels ────
  labels$fill not equal to "fill".
  target is NULL, current is character
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 48 ]
  Error: Test failures
  Execution halted
checkRd: (-1) add_bars.Rd:15: Lost braces
    15 | When \\code{y0} is not specified, the lowest value of the y-axis is used.}
       |            ^
checkRd: (-1) add_bars.Rd:24: Lost braces
    24 | \\code{\\link[graphics]{par}}.}
       |       ^
checkRd: (-1) add_bars.Rd:24: Lost braces
    24 | \\code{\\link[graphics]{par}}.}
       |                        ^
checkRd: (-1) plotluck.Rd:129: Lost braces
   129 |  in factors are are shown as a special factor level code{"?"}. They can be
       |                                                         ^
Found the following HTML validation problems:
add_fun.html:56:1 (add_fun.Rd:15): Warning: missing </ul> before </div>
as.widget.html:52:1 (as.widget.Rd:12): Warning: missing </ul> before </div>
geom2trace.html:57:1 (geom2trace.Rd:14): Warning: missing </ul> before </div>
get_figure.html:50:1 (get_figure.Rd:12): Warning: missing </ul> before </div>
plotly-shiny.html:92:1 (plotly-shiny.Rd:43): Warning: missing </ul> before </div>
plotly_empty.html:46:1 (plotly_empty.Rd:10): Warning: missing </ul> before </div>
print.api.html:51:1 (print.api.Rd:12): Warning: missing </ul> before </div>
print.api_grid.html:51:1 (print.api_grid.Rd:12): Warning: missing </ul> before </div>
print.api_grid_local.html:51:1 (print.api_grid_local.Rd:12): Warning: missing </ul> before </div>
print.api_plot.html:51:1 (print.api_plot.Rd:12): Warning: missing </ul> before </div>
print.kaleidoScope.html:51:1 (print.kaleidoScope.Rd:12): Warning: missing </ul> before </div>
to_basic.html:69:1 (to_basic.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plotmo.misc.html:221:1 (plotmo.misc.Rd:103): Warning: missing </ul> before </div>
Maintainer: ‘Stephen Milborrow <milbo@sonic.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Milborrow",
                    role = c("aut", "cre"),
                    email = "milbo@sonic.net")
as necessary.
Maintainer: ‘Joaquin Bienvenido Ordieres Mere <j.ordieres@upm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Javier", "Celigueta"),
                      family = "Mu<b1>oz",
                      role = "aut",
                      email = "b1"),
               person(given = c("Joaquin", "Bienvenido", "Ordieres"),
                      family = "Mere",
                      role = "cre",
                      email = "j.ordieres@upm.es"))
as necessary.
Maintainer: ‘Yao Geng <gengyao0103521@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yao",
                      family = "Geng",
                      role = "cre",
                      email = "gengyao0103521@qq.com"))
as necessary.
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein-package.Rd:20: Lost braces
    20 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Found the following HTML validation problems:
direct_label.html:77:1 (direct_label.Rd:31): Warning: missing </ul> before </div>
roc_key.html:54:1 (roc_key.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Found the following HTML validation problems:
ClustreePlotAtomic.html:155:1 (ClustreePlotAtomic.Rd:83): Warning: missing </ul> before </div>
DensityHistoPlotAtomic.html:269:1 (DensityHistoPlotAtomic.Rd:155): Warning: missing </ul> before </div>
GSEAPlotAtomic.html:147:1 (GSEAPlotAtomic.Rd:73): Warning: missing </ul> before </div>
LinePlotSingle.html:292:1 (LinePlotSingle.Rd:166): Warning: missing </ul> before </div>
PieChartAtomic.html:179:1 (PieChartAtomic.Rd:97): Warning: missing </ul> before </div>
RidgePlotAtomic.html:237:1 (RidgePlotAtomic.Rd:135): Warning: missing </ul> before </div>
SplitBarPlotAtomic.html:247:1 (SplitBarPlotAtomic.Rd:139): Warning: missing </ul> before </div>
common_args.html:251:1 (common_args.Rd:125): Warning: missing </ul> before </div>
dot-anno_ggcat.html:110:1 (dot-anno_ggcat.Rd:50): Warning: missing </ul> before </div>
dot-compute_velocity_on_grid.html:88:1 (dot-compute_velocity_on_grid.Rd:36): Warning: missing </ul> before </div>
heatmap-anno.html:258:1 (heatmap-anno.Rd:203): Warning: missing </ul> before </div>
heatmap-layer.html:133:1 (heatmap-layer.Rd:75): Warning: missing </ul> before </div>
validate_common_args.html:217:1 (validate_common_args.Rd:123): Warning: missing </ul> before </div>
Maintainer: ‘January Weiner <january.weiner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "January",
                    family = "Weiner",
                    role = c("aut", "cre"),
                    email = "january.weiner@gmail.com")
as necessary.
Maintainer: ‘Felipe Queiroz <ffelipeq@outlook.com>’

The Description field contains
  are described in Queiroz and Ferrari (2022) <arXiv:2202.01697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ana Lopez-Cheda <ana.lopez.cheda@udc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("German", "Aneiros"),
                      family = "Perez",
                      role = "aut"),
               person(given = "Ana",
                      family = "Lopez-Cheda",
                      role = c("aut", "cre"),
                      email = "ana.lopez.cheda@udc.es"))
as necessary.
Maintainer: ‘Ghislain Durif <gd.dev@libertymail.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne-Laure",
                      family = "Boulesteix",
                      role = "aut",
                      email = "boulesteix@ibe.med.uni-muenchen.de"),
               person(given = "Ghislain",
                      family = "Durif",
                      role = c("aut", "cre"),
                      email = "gd.dev@libertymail.net"),
               person(given = "Sophie",
                      family = "Lambert-Lacroix",
                      role = "aut",
                      email = "sophie.lambert-lacroix@univ-grenoble-alpes.fr"),
               person(given = "Julie",
                      family = "Peyre",
                      role = "aut",
                      email = "Julie.Peyre@univ-grenoble-alpes.fr"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut",
                      email = "k.strimmer@imperial.ac.uk"))
as necessary.
Maintainer: ‘Shunyao Wu <wushunyao@qdu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shunyao",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wushunyao@qdu.edu.cn"),
               person(given = "Qi",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Zhiruo",
                      family = "Li",
                      role = "aut"),
               person(given = "Hua",
                      family = "Liang",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PLSiMCpp.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
multi_predict.html:74:1 (multi_predict.Rd:29): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cbh.html:54:1 (cbh.Rd:14): Warning: missing </ul> before </div>
find_family.html:46:1 (find_family.Rd:10): Warning: missing </ul> before </div>
formula_setup.html:96:1 (formula_setup.Rd:44): Warning: missing </ul> before </div>
lasso_gam_loop.html:91:1 (lasso_gam_loop.Rd:39): Warning: missing </ul> before </div>
meandist.html:46:1 (meandist.Rd:10): Warning: missing </ul> before </div>
nzeros.html:46:1 (nzeros.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_GQI.html:55:1 (get_GQI.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eva", "Herrmann;", "R", "interface", "etc", "by", "Martin"),
                      family = "Maechler",
                      role = "aut",
                      email = "eherrmann@mathematik.tu-darmstadt.de",
                      comment = "C original"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "cre",
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plug.R’
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
add_listener.html:54:1 (add_listener.Rd:10): Warning: missing </ul> before </div>
changed.html:46:1 (changed.Rd:8): Warning: missing </ul> before </div>
is_paused.html:46:1 (is_paused.Rd:8): Warning: missing </ul> before </div>
notify_listeners.html:50:1 (notify_listeners.Rd:10): Warning: missing </ul> before </div>
proxy_bindings.html:50:1 (proxy_bindings.Rd:10): Warning: missing </ul> before </div>
remove_listener.html:53:1 (remove_listener.Rd:12): Warning: missing </ul> before </div>
shape_changed.html:50:1 (shape_changed.Rd:10): Warning: missing </ul> before </div>
unpause.html:46:1 (unpause.Rd:8): Warning: missing </ul> before </div>
variable_names.html:46:1 (variable_names.Rd:8): Warning: missing </ul> before </div>
checkRd: (-1) plu_more.Rd:16: Lost braces; missing escapes or markup?
    16 | Additional arguments are replaced with "{n} more".
       |                                         ^
Maintainer: ‘Michael Doyle <michaeledoyle7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Doyle",
                    role = c("aut", "cre"),
                    email = "michaeledoyle7@gmail.com")
as necessary.
Found the following HTML validation problems:
amv_dim.html:46:1 (amv_dim.Rd:10): Warning: missing </ul> before </div>
as.list.split.html:51:1 (as.list.split.Rd:12): Warning: missing </ul> before </div>
compact.html:46:1 (compact.Rd:10): Warning: missing </ul> before </div>
defaults.html:50:1 (defaults.Rd:12): Warning: missing </ul> before </div>
dims.html:46:1 (dims.Rd:10): Warning: missing </ul> before </div>
empty.html:46:1 (empty.Rd:10): Warning: missing </ul> before </div>
get-split.html:55:1 (get-split.Rd:14): Warning: missing </ul> before </div>
indexed_array.html:51:1 (indexed_array.Rd:15): Warning: missing </ul> before </div>
indexed_df.html:54:1 (indexed_df.Rd:14): Warning: missing </ul> before </div>
join.keys.html:56:1 (join.keys.Rd:15): Warning: missing </ul> before </div>
loop_apply.html:55:1 (loop_apply.Rd:14): Warning: missing </ul> before </div>
nunique.html:46:1 (nunique.Rd:10): Warning: missing </ul> before </div>
print.split.html:51:1 (print.split.Rd:12): Warning: missing </ul> before </div>
quickdf.html:48:1 (quickdf.Rd:10): Warning: missing </ul> before </div>
reduce_dim.html:46:1 (reduce_dim.Rd:10): Warning: missing </ul> before </div>
split_labels.html:50:1 (split_labels.Rd:12): Warning: missing </ul> before </div>
tryapply.html:56:1 (tryapply.Rd:15): Warning: missing </ul> before </div>
unrowname.html:46:1 (unrowname.Rd:10): Warning: missing </ul> before </div>
Found the following significant warnings:
  imd_anova.cpp:450:43: warning: 'from<double, arma::eOp<arma::Glue<arma::Op<arma::Col<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eop_scalar_div_post>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  imd_anova.cpp:464:44: warning: 'from<double, arma::eOp<arma::Glue<arma::Op<arma::Col<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eop_scalar_div_post>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  imd_anova.cpp:478:43: warning: 'from<double, arma::eOp<arma::Glue<arma::Op<arma::Col<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eop_scalar_div_post>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  imd_anova.cpp:491:46: warning: 'from<double, arma::eOp<arma::Glue<arma::Op<arma::Col<double>, arma::op_htrans>, arma::Col<double>, arma::glue_times>, arma::eop_scalar_div_post>>' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  imd_anova.cpp:670:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pmartR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.PMCMR.html:53:1 (print.PMCMR.Rd:12): Warning: missing </ul> before </div>
print.gesdTest.html:53:1 (print.gesdTest.Rd:12): Warning: missing </ul> before </div>
print.powerOneWayPMCMR.html:54:1 (print.powerOneWayPMCMR.Rd:12): Warning: missing </ul> before </div>
print.trendPMCMR.html:53:1 (print.trendPMCMR.Rd:12): Warning: missing </ul> before </div>
summary.gesdTest.html:51:1 (summary.gesdTest.Rd:12): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:241:1 (inst/NEWS.Rd:134): Warning: missing </ul> before </div>
NEWS.html:122:1 (inst/NEWS.Rd:67): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:155:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:172:1 (inst/NEWS.Rd:99): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:191:1 (inst/NEWS.Rd:110): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:207:1 (inst/NEWS.Rd:118): Warning: <h4> anchor "BUGFIXES" already defined
NEWS.html:223:1 (inst/NEWS.Rd:126): Warning: <h4> anchor "NEW-FEATURES" already defined
checkRd: (-1) PMCMR-deprecated.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘earned_value.R’ ‘planned_value.R’ ‘pmevR6.R’
Found the following HTML validation problems:
ev.html:137:1 (ev.Rd:91): Warning: <h5> anchor "Usage" already defined
ev.html:153:1 (ev.Rd:101): Warning: <h5> anchor "Usage" already defined
ev.html:159:1 (ev.Rd:105): Warning: <h5> anchor "Arguments" already defined
get_planned_value.html:51:1 (get_planned_value.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Johan Dahlin <uni@johandahlin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johan",
                    family = "Dahlin",
                    role = c("aut", "cre"),
                    email = "uni@johandahlin.com")
as necessary.
checkRd: (-1) pmledecon.Rd:113: Lost braces; missing escapes or markup?
   113 |     likelihood less than $10^{-10}$ are replaced by $10^{-10}$.
       |                              ^
checkRd: (-1) pmledecon.Rd:113: Lost braces; missing escapes or markup?
   113 |     likelihood less than $10^{-10}$ are replaced by $10^{-10}$.
       |                                                         ^
Maintainer: ‘Dmitriy Bolotov <rpmmlsupport@softwareag.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tridivesh",
                      family = "Jena",
                      role = "aut"),
               person(given = c("Wen", "Ching"),
                      family = "Lin",
                      role = "aut"),
               person(given = "Dmitriy",
                      family = "Bolotov",
                      role = c("aut", "cre"),
                      email = "rpmmlsupport@softwareag.com"))
as necessary.
Maintainer: ‘Paul H. Lee <honglee@graduate.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "H."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "honglee@graduate.hku.hk"),
               person(given = c("Philip", "L.", "H."),
                      family = "Yu",
                      role = "aut"))
as necessary.
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                   ^
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                              ^
Maintainer: ‘Alexander Davis <ajdavis2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Davis",
                    role = c("aut", "cre"),
                    email = "ajdavis2@mdanderson.org")
as necessary.
Found the following HTML validation problems:
check_run_stage_args.html:118:1 (check_run_stage_args.Rd:61): Warning: missing </ul> before </div>
gibbs_step_err.html:52:1 (gibbs_step_err.Rd:12): Warning: missing </ul> before </div>
new_sample_err.html:55:1 (new_sample_err.Rd:14): Warning: missing </ul> before </div>
particle_select_err.html:56:1 (particle_select_err.Rd:15): Warning: missing </ul> before </div>
set_epsilon.html:51:1 (set_epsilon.Rd:12): Warning: missing </ul> before </div>
set_mix.html:51:1 (set_mix.Rd:12): Warning: missing </ul> before </div>
set_proposal.html:61:1 (set_proposal.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
Maintainer: ‘Jake Lawlor <jakealawlor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Lawlor",
                    role = c("aut", "cre"),
                    email = "jakealawlor@gmail.com")
as necessary.
Maintainer: ‘Hector Haffenden <haffendenh@cardiff.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hector",
                    family = "Haffenden",
                    role = c("aut", "cre"),
                    email = "haffendenh@cardiff.ac.uk")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
pocket_modify_bulk_.html:62:1 (pocket_modify_bulk_.Rd:18): Warning: missing </ul> before </div>
pocket_post_.html:58:1 (pocket_post_.Rd:16): Warning: missing </ul> before </div>
warn_for_failures_.html:46:1 (warn_for_failures_.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Dabao Zhang <zhangdb@purdue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dabao",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangdb@purdue.edu"),
               person(given = "Zhongli",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Zeyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yu-ting",
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘"Brewer, Ben (arb5mt)" <arb5mt@virginia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nolan", "A."),
                      family = "Wages",
                      role = "aut"),
               person(family = "\"Brewer",
                      role = "cre"),
               person(family = "Ben\"",
                      role = "cre",
                      email = "arb5mt@virginia.edu",
                      comment = "arb5mt"))
as necessary.
Maintainer: ‘Markus Boenn <markus.boenn.sf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Boenn",
                    role = c("aut", "cre"),
                    email = "markus.boenn.sf@gmail.com",
                    comment = "State Office for Consumer Protection Saxony-Anhalt, Germany")
as necessary.
Maintainer: ‘Martina Mincheva <m.z.mincheva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jianqing",
                      family = "Fan",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Liao",
                      role = "aut"),
               person(given = "Martina",
                      family = "Mincheva",
                      role = c("aut", "cre"),
                      email = "m.z.mincheva@gmail.com"))
as necessary.
Maintainer: ‘Michaela Dvorzak <m.dvorzak@gmx.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniela",
                    family = "Witten",
                    role = c("aut", "cre"),
                    email = "dwitten@u.washington.edu")
as necessary.
Found the following HTML validation problems:
print.action_levels.html:51:1 (print.action_levels.Rd:12): Warning: missing </ul> before </div>
print.ptblank_agent.html:56:1 (print.ptblank_agent.Rd:14): Warning: missing </ul> before </div>
print.ptblank_informant.html:56:1 (print.ptblank_informant.Rd:14): Warning: missing </ul> before </div>
print.ptblank_multiagent.html:56:1 (print.ptblank_multiagent.Rd:14): Warning: missing </ul> before </div>
print.ptblank_multiagent_report.long.html:56:1 (print.ptblank_multiagent_report.long.Rd:14): Warning: missing </ul> before </div>
print.ptblank_tbl_scan.html:56:1 (print.ptblank_tbl_scan.Rd:14): Warning: missing </ul> before </div>
print.read_fn.html:51:1 (print.read_fn.Rd:12): Warning: missing </ul> before </div>
print.tbl_store.html:51:1 (print.tbl_store.Rd:12): Warning: missing </ul> before </div>
print.x_list_i.html:51:1 (print.x_list_i.Rd:12): Warning: missing </ul> before </div>
print.x_list_n.html:52:1 (print.x_list_n.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Paul Evangelista <paul.evangelista@westpoint.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Paul",
                      family = "Evangelista",
                      role = "aut",
                      email = "paul.evangelista@westpoint.edu"),
               person(given = "Dave",
                      family = "Beskow\"",
                      role = "aut",
                      email = "david.beskow@westpoint.edu"),
               person(given = "Paul",
                      family = "Evangelista",
                      role = "cre",
                      email = "paul.evangelista@westpoint.edu"))
as necessary.
Maintainer: ‘Patrick Schmidt <pschmidte@gmail.com>’

The Description field contains
  Katzfuss and Gneiting (2015) <arXiv:1506.01917> for more details on the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) estimate.functional.Rd:34: Lost braces; missing escapes or markup?
    34 | \item{bw}{function describing bandwidth selection (see ?gmm for alternatives). Standard is that the bandwidth depends on the sample length $T$ by $m(T)=T^{1/5}$.}
       |                                                                                                                                                           ^
Maintainer: ‘Marieke van der Maaten-Theunissen <marieke.theunissen@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marieke",
                      family = "van der Maaten-Theunissen",
                      role = c("aut", "cph", "cre", "trl"),
                      email = "marieke.theunissen@tu-dresden.de"),
               person(given = "Ernst",
                      family = "van der Maaten",
                      role = c("aut", "trl")),
               person(given = "Gottfried",
                      family = "Jetsckhe",
                      role = c("aut", "trl")),
               person(given = "Mario",
                      family = "Trouillier",
                      role = c("aut", "trl")))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rachel",
                      family = "Nordgren",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yiran",
                      family = "Hu",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘David Kahle <david@kahle.io>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) pois.fe.robust.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pois.fe.robust.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pois.fe.robust.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

The Description field contains
  bag-of-words-based topic modeling) (Cortes, (2018) <arXiv:1811.01908>),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.poismf.html:51:1 (print.poismf.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yaru",
                      family = "Shi",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Toby Kenney <tkenney@mathstat.dal.ca>’

The Description field contains
  Kenney, T. Huang, H. Gu (2019) <arXiv:1904.11745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Pechel Cactcha <davidpechel@uy1.uninet.cm>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Pechel"),
                      family = "Cactcha",
                      role = c("aut", "cre"),
                      email = "davidpechel@uy1.uninet.cm"),
               person(given = c("Laure", "Pauline"),
                      family = "Fotso",
                      role = "aut"),
               person(given = c("Celestin", "C"),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.
Maintainer: ‘Drew Linzer <drew@votamatic.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Drew",
                      family = "Linzer",
                      role = c("aut", "cre"),
                      email = "drew@votamatic.org"),
               person(given = "Jeffrey",
                      family = "Lewis.",
                      role = "aut",
                      email = "jblewis@ucla.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) carcinoma.Rd:8: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:69: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pp_measures.Rd: diversity
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
create_dot_body.html:54:1 (create_dot_body.Rd:14): Warning: missing </ul> before </div>
export_graphviz.html:50:1 (export_graphviz.Rd:12): Warning: missing </ul> before </div>
print.policy_tree.html:51:1 (print.policy_tree.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Barry Edwards <barry.edwards@ucf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Barry",
                      family = "Edwards",
                      role = c("aut", "cre"),
                      email = "barry.edwards@ucf.edu"),
               person(given = "Philip",
                      family = "Pollock",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
available.imported.functions.html:172:1 (available.imported.functions.Rd:86): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.polite.html:51:1 (print.polite.Rd:12): Warning: missing </ul> before </div>
use_manners.html:50:1 (use_manners.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hiperfrac.R’ ‘rice.R’
Maintainer: ‘John D. Johnson <john.d.johnson@marquette.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "D."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "john.d.johnson@marquette.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘crosstab3way.Rmd’ using rmarkdown

Quitting from crosstab3way.Rmd:40-54 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    ▆
 1. └─ggplot2::labs(...)
 2.   └─ggplot2::class_labels(args)
 3.     └─S7::new_object(labels)
 4.       └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'crosstab3way.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘crosstab3way.Rmd’

--- re-building ‘crosstabs.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘crosstabs.Rmd’

--- re-building ‘toplines.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘toplines.Rmd’

SUMMARY: processing the following file failed:
  ‘crosstab3way.Rmd’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hits.R’ ‘size.R’ ‘utils.R’
Found the following HTML validation problems:
as.sparseMatrix.html:68:1 (as.sparseMatrix.Rd:29): Warning: missing </ul> before </div>
dotplot-method.html:70:1 (dotplot-method.Rd:28): Warning: missing </ul> before </div>
means-method.html:58:1 (means-method.Rd:18): Warning: missing </ul> before </div>
polmineR-defunct.html:49:1 (polmineR-defunct.Rd:14): Warning: missing </ul> before </div>
polmineR-generics.html:50:1 (polmineR-generics.Rd:14): Warning: missing </ul> before </div>
ranges.html:142:1 (ranges.Rd:90): Warning: missing </ul> before </div>
renamed.html:73:1 (renamed.Rd:40): Warning: missing </ul> before </div>
view.html:50:1 (view.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Conrad Burden <conrad.burden@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conrad",
                    family = "Burden",
                    role = c("aut", "cre"),
                    email = "conrad.burden@anu.edu.au")
as necessary.

The Description field contains
  Conrad J. Burden (2014) <arXiv:1406.2780>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
plot_polyregion.html:62:1 (plot_polyregion.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Roeland E. Voorrips <roeland.voorrips@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roeland", "E."),
                    family = "Voorrips",
                    role = c("aut", "cre"),
                    email = "roeland.voorrips@wur.nl")
as necessary.
Found the following HTML validation problems:
minor.html:52:1 (minor.Rd:12): Warning: missing </ul> before </div>
polyMatrix-mmult.html:53:1 (polyMatrix-mmult.Rd:16): Warning: missing </ul> before </div>
polyMatrix.apply.html:50:1 (polyMatrix.apply.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = c("with", "contribution", "by", "Kurt"),
                      family = "Hornik",
                      role = "aut"),
               person(given = "Georgi",
                      family = "Boshnakov",
                      role = "aut"),
               person(given = "Brian",
                      family = "Ripley.",
                      role = "aut"))
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Zwart <Alec.Zwart@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Zwart",
                    role = c("aut", "cre"),
                    email = "alec.zwart@csiro.au")
as necessary.
checkRd: (-1) inputData.Rd:94: Lost braces
    94 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) inputData.Rd:95: Lost braces
    95 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) preprocessData.Rd:81: Lost braces
    81 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) preprocessData.Rd:82: Lost braces
    82 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) stat_quantile_prob.Rd:14: Lost braces; missing escapes or markup?
    14 | Number {25, 50, 75}
       |        ^
Found the following HTML validation problems:
segMaker.html:58:1 (segMaker.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Norm Matloff <matloff@cs.ucdavis.edu>’

The Description field contains
  Matloff, and Pete Mohanty (<arXiv:1806.06850>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Baker <p.baker1@uq.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) calculateDIC.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculateDIC.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polySegratioMM-package.Rd:70-72: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘test-data.R’ ‘test-inits.R’ ‘test.bug’ ‘test.cmd’
Maintainer: ‘Peter Baker <p.baker1@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Baker",
                    role = c("aut", "cre"),
                    email = "p.baker1@uq.edu.au")
as necessary.
Maintainer: ‘Sourav Chatterjee <souravc@stanford.edu>’

The Description field contains
  Vidyasagar (2022) <arxiv:2209.07028>. The method is fully
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
condeptree.html:54:1 (condeptree.Rd:14): Warning: missing </ul> before </div>
outgoing.html:58:1 (outgoing.Rd:16): Warning: missing </ul> before </div>
xicorln.html:50:1 (xicorln.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Junghi Kim <junghikim0@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junghi",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "junghikim0@gmail.com"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Cyril Piou <cyril.piou@cirad.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pomic-package.Rd’:
    http://dx.doi.org/10.1016/j.ecolmodel.2009.05.003
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
checkRd: (-1) MLM_Model.Rd:31: Lost braces; missing escapes or markup?
    31 |   the weight vectors \bold{{w}^{i}} corresponds to class \eqn{i}{i}.
       |                                ^
checkRd: (-1) MLM_Model.Rd:33: Lost braces; missing escapes or markup?
    33 | We set \eqn{{\bold{{w}}^{h}} = 0} and the parameters to be learned are the weight vectors \bold{{w}^{i}}
       |                                                                                                     ^
Found the following HTML validation problems:
as_pomp.html:50:1 (as_pomp.Rd:13): Warning: missing </ul> before </div>
pStop.html:63:1 (pStop.Rd:30): Warning: missing </ul> before </div>
plot.html:162:1 (plot.Rd:95): Warning: missing </ul> before </div>
print.html:57:1 (print.Rd:19): Warning: missing </ul> before </div>
window.html:55:1 (window.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Gavin Douglas <gavinmdouglas@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forceLocus.Rd: forcePool
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Chris Salahub <chris.salahub@uwaterloo.ca>’

The Description field contains
  in Salahub and Olford (2023) <arXiv:2310.16600>. This package provides
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lech Kujawski <lech.kujawski@ug.edu.pl>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PooledMeanGroup-package.Rd’:
    \keyword{package, PMG, pooled mean group, dynamic  [TRUNCATED]
Found the following HTML validation problems:
heatmap-pairwisefst-method.html:148:1 (heatmap-pairwisefst-method.Rd:73): Warning: missing </ul> before </div>
is.countdata.html:46:1 (is.countdata.Rd:10): Warning: missing </ul> before </div>
is.fitted.graph.html:46:1 (is.fitted.graph.Rd:10): Warning: missing </ul> before </div>
is.fstats.html:46:1 (is.fstats.Rd:10): Warning: missing </ul> before </div>
is.graph.params.html:46:1 (is.graph.params.Rd:10): Warning: missing </ul> before </div>
is.pairwisefst.html:46:1 (is.pairwisefst.Rd:10): Warning: missing </ul> before </div>
is.pooldata.html:46:1 (is.pooldata.Rd:10): Warning: missing </ul> before </div>
plot-fitted.graph-method.html:51:1 (plot-fitted.graph-method.Rd:12): Warning: missing </ul> before </div>
plot-graph.params-method.html:51:1 (plot-graph.params-method.Rd:12): Warning: missing </ul> before </div>
show-countdata-method.html:47:1 (show-countdata-method.Rd:10): Warning: missing </ul> before </div>
show-fitted.graph-method.html:47:1 (show-fitted.graph-method.Rd:10): Warning: missing </ul> before </div>
show-fstats-method.html:47:1 (show-fstats-method.Rd:10): Warning: missing </ul> before </div>
show-graph.params-method.html:47:1 (show-graph.params-method.Rd:10): Warning: missing </ul> before </div>
show-pairwisefst-method.html:47:1 (show-pairwisefst-method.Rd:10): Warning: missing </ul> before </div>
show-pooldata-method.html:47:1 (show-pooldata-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
DBI-custom.html:105:1 (DBI-custom.Rd:37): Warning: missing </ul> before </div>
Pool-class.html:97:1 (Pool-class.Rd:44): Warning: missing </ul> before </div>
hooks.html:81:1 (hooks.Rd:44): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘getPrevalence.R’
Maintainer: ‘Stefano Nembrini <stefanonembrini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefano",
                    family = "Nembrini",
                    role = c("aut", "cre"),
                    email = "stefanonembrini@gmail.com")
as necessary.
Found the following HTML validation problems:
fisher.html:54:1 (fisher.Rd:14): Warning: missing </ul> before </div>
gaussianize.html:50:1 (gaussianize.Rd:12): Warning: missing </ul> before </div>
m_effective.html:46:1 (m_effective.Rd:10): Warning: missing </ul> before </div>
tippett.html:54:1 (tippett.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Chris Stubben <chris.stubben@hci.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Stubben",
                      role = c("aut", "cre"),
                      email = "chris.stubben@hci.utah.edu"),
               person(given = "Brook",
                      family = "Milligan",
                      role = "aut"),
               person(given = "Patrick",
                      family = "Nantel",
                      role = "aut"))
as necessary.
Running examples in ‘PopComm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: circle_plot
> ### Title: Plot Circular Ligand-Receptor Interaction Network
> ### Aliases: circle_plot
> 
> ### ** Examples
> 
> # Plot Circular Cell-Cell Interaction Network
> data(filtered_lr_eg)
> p <- circle_plot(filtered_lr_eg, edge_width = "count", show_self_interactions = TRUE)
Warning: edge attribute loop.angle contains NAs. Replacing with default value
Error in p[[type]][[name]][is.na(p[[type]][[name]])] <- i.default.values[[type]][[name]] : 
  replacement has length zero
Calls: circle_plot -> plot -> plot.igraph -> params
Execution halted
Found the following HTML validation problems:
design_summary.html:54:1 (design_summary.Rd:14): Warning: missing </ul> before </div>
log_prior_pdf.html:81:1 (log_prior_pdf.Rd:30): Warning: missing </ul> before </div>
median_hilow_poped.html:52:1 (median_hilow_poped.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Aki Jarl Laruson <akijarl@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aki", "Jarl", "Laruson;", "Floyd"),
                      family = "Reed",
                      role = "aut"),
               person(given = c("Aki", "Jarl"),
                      family = "Laruson",
                      role = "cre",
                      email = "akijarl@gmail.com"))
as necessary.
Maintainer: ‘Jiacheng Miao <jiacheng.miao@wisc.edu>’

The Description field contains
  (2023) <arXiv:2311.14220>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
bruvo.msn.html:198:1 (bruvo.msn.Rd:133): Warning: <h4> anchor "mlg.compute" already defined
plot_poppr_msn.html:247:1 (plot_poppr_msn.Rd:163): Warning: <h4> anchor "mlg.compute" already defined
poppr.msn.html:186:1 (poppr.msn.Rd:125): Warning: <h4> anchor "mlg.compute" already defined
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Golding",
                    role = c("aut", "cre"),
                    email = "nick.golding.research@gmail.com")
as necessary.
Maintainer: ‘"Mark C. Wheldon" <biostatmark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mark", "C."),
                      family = "Wheldon",
                      role = "aut"),
               person(given = c("\"Mark", "C."),
                      family = "Wheldon\"",
                      role = "cre",
                      email = "biostatmark@gmail.com"))
as necessary.
Found the following HTML validation problems:
map.build.html:147:1 (map.build.Rd:63): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Guillaume Chapron <gchapron@carnivoreconservation.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guillaume",
                    family = "Chapron",
                    role = c("aut", "cre"),
                    email = "gchapron@carnivoreconservation.org")
as necessary.
Maintainer: ‘Marios Batsaris <m.batsaris@aegean.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marios",
                    family = "Batsaris",
                    role = c("aut", "cre"),
                    email = "m.batsaris@aegean.gr")
as necessary.
Found the following HTML validation problems:
lifetab.html:263:1 (lifetab.Rd:183): Warning: <h3> anchor "ax" already defined
Found the following HTML validation problems:
internal.html:156:1 (internal.Rd:89): Warning: missing </ul> before </div>
Found the following HTML validation problems:
clean_plant_data.html:80:1 (clean_plant_data.Rd:30): Warning: missing </ul> before </div>
clean_rodent_data.html:81:1 (clean_rodent_data.Rd:27): Warning: missing </ul> before </div>
load_datafile.html:82:1 (load_datafile.Rd:34): Warning: missing </ul> before </div>
ndvi.html:77:1 (ndvi.Rd:31): Warning: missing </ul> before </div>
phenocam.html:51:1 (phenocam.Rd:13): Warning: missing </ul> before </div>
print.html:51:1 (print.Rd:13): Warning: missing </ul> before </div>
weather.html:71:1 (weather.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Esam Mahdi <emahdi2012@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Esam",
                    family = "Mahdi",
                    role = c("aut", "cre"),
                    email = "emahdi2012@gmail.com")
as necessary.
'::' or ':::' import not declared from: ‘RPESE’
'library' or 'require' calls not declared from:
  ‘TTR’ ‘doMC’
Found the following HTML validation problems:
CCCgarch.MM.html:56:1 (CCCgarch.MM.Rd:14): Warning: missing </ul> before </div>
extract_risk.html:62:1 (extract_risk.Rd:18): Warning: missing </ul> before </div>
name.replace.html:46:1 (name.replace.Rd:10): Warning: missing </ul> before </div>
set.portfolio.moments_v1.html:59:1 (set.portfolio.moments_v1.Rd:17): Warning: missing </ul> before </div>
summary.optimize.portfolio.rebalancing.html:51:1 (summary.optimize.portfolio.rebalancing.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
stockDataResample.html:69:1 (stockDataResample.Rd:25): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
dot-F_func.html:90:1 (dot-F_func.Rd:32): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cap_exposure.html:63:1 (cap_exposure.Rd:21): Warning: missing </ul> before </div>
combine_scores.html:63:1 (combine_scores.Rd:21): Warning: missing </ul> before </div>
demo_sector_map.html:50:1 (demo_sector_map.Rd:12): Warning: missing </ul> before </div>
join_panels.html:46:1 (join_panels.Rd:10): Warning: missing </ul> before </div>
make_labels.html:54:1 (make_labels.Rd:14): Warning: missing </ul> before </div>
panel_lag.html:50:1 (panel_lag.Rd:12): Warning: missing </ul> before </div>
roll_ic_stats.html:50:1 (roll_ic_stats.Rd:12): Warning: missing </ul> before </div>
select_top_k_scores_by_group.html:58:1 (select_top_k_scores_by_group.Rd:16): Warning: missing </ul> before </div>
validate_group_map.html:50:1 (validate_group_map.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
jolla.html:66:1 (jolla.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘James Robinson <james.em.robinson@gmail.com>’

The Description field contains
  <arXiv:1806.11544>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Char Leung <charleung@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Char",
                    family = "Leung",
                    role = c("aut", "cre"),
                    email = "charleung@hotmail.fr")
as necessary.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Found the following HTML validation problems:
null_to_na.html:46:1 (null_to_na.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
po_compile.html:62:1 (po_compile.Rd:18): Warning: missing </ul> before </div>
po_create.html:66:1 (po_create.Rd:21): Warning: missing </ul> before </div>
po_explain_plurals.html:55:1 (po_explain_plurals.Rd:14): Warning: missing </ul> before </div>
po_update.html:84:1 (po_update.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = "Leif",
                      family = "Johnson",
                      role = "aut",
                      email = "ltjohnson@google.com"))
as necessary.
Found the following HTML validation problems:
H2.html:61:1 (H2.Rd:19): Warning: missing </ul> before </div>
analyseMCMCs.html:59:1 (analyseMCMCs.Rd:22): Warning: missing </ul> before </div>
logLik.POUMM.html:51:1 (logLik.POUMM.Rd:12): Warning: missing </ul> before </div>
loglik_abc_g0_g0Prior.html:64:1 (loglik_abc_g0_g0Prior.Rd:20): Warning: missing </ul> before </div>
summary.POUMM.html:85:1 (summary.POUMM.Rd:38): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ebp.Rd: nlme
  write.excel.Rd: openxlsx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
power4test.html:756:1 (power4test.Rd:593): Warning: <h4> anchor "Single-Group-Model" already defined
power4test.html:878:1 (power4test.Rd:690): Warning: <h4> anchor "Multigroup-Model" already defined
power4test.html:936:1 (power4test.Rd:739): Warning: <h4> anchor "Single-Group-Model" already defined
power4test.html:1046:1 (power4test.Rd:814): Warning: <h4> anchor "Multigroup-Model" already defined
power4test.html:1156:1 (power4test.Rd:913): Warning: <h4> anchor "Single-Group-Model" already defined
ptable_pop.html:280:1 (ptable_pop.Rd:214): Warning: <h4> anchor "Single-Group-Model" already defined
ptable_pop.html:402:1 (ptable_pop.Rd:311): Warning: <h4> anchor "Multigroup-Model" already defined
ptable_pop.html:460:1 (ptable_pop.Rd:360): Warning: <h4> anchor "Single-Group-Model" already defined
ptable_pop.html:570:1 (ptable_pop.Rd:435): Warning: <h4> anchor "Multigroup-Model" already defined
sim_data.html:653:1 (sim_data.Rd:511): Warning: <h4> anchor "Single-Group-Model" already defined
sim_data.html:706:1 (sim_data.Rd:558): Warning: <h4> anchor "Single-Group-Model" already defined
sim_data.html:828:1 (sim_data.Rd:655): Warning: <h4> anchor "Multigroup-Model" already defined
sim_data.html:886:1 (sim_data.Rd:704): Warning: <h4> anchor "Single-Group-Model" already defined
sim_data.html:996:1 (sim_data.Rd:779): Warning: <h4> anchor "Multigroup-Model" already defined
Maintainer: ‘Eric Kawaguchi <erickawaguchi@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qing",
                      family = "Yang",
                      role = "aut"),
               person(given = c("Wing", "K."),
                      family = "Fung",
                      role = "aut"),
               person(given = "Eric",
                      family = "Kawaguchi",
                      role = c("ctb", "cre"),
                      email = "erickawaguchi@ucla.edu"),
               person(given = "Gang",
                      family = "Li",
                      role = c("aut", "cre")))
as necessary.
Found the following HTML validation problems:
power_example.html:62:1 (power_example.Rd:18): Warning: missing </ul> before </div>
result_example.html:59:1 (result_example.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Charles Kooperberg <clk@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Kooperberg",
                      role = c("aut", "cre"),
                      email = "clk@fredhutch.org"),
               person(given = "Li",
                      family = "Hsu",
                      role = "aut",
                      email = "lih@fredhutch.org"))
as necessary.
checkRd: (-1) coalesce_xy.Rd:22: Lost braces; missing escapes or markup?
    22 | the \code{conflict} argument of {powerjoin}'s join functions. \code{coalesce_xy()} is
       |                                 ^
checkRd: (-1) power_left_join.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{by}{As in {dplyr}, but extended so user can supply a formula or a list
       |                 ^
checkRd: (-1) power_left_join.Rd:79: Lost braces; missing escapes or markup?
    79 | \item{keep}{A boolean for compatibility with {dplyr}, or a value among "left",
       |                                              ^
checkRd: (-1) preprocess_inputs.Rd:37: Lost braces; missing escapes or markup?
    37 | only be used in the \code{x} and \code{y} arguments of {powerjoin} join functions. No
       |                                                        ^
Found the following HTML validation problems:
plot.bs_xmin.html:63:1 (plot.bs_xmin.Rd:21): Warning: missing </ul> before </div>
show-distribution-method.html:49:1 (show-distribution-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Weiliang Qiu <weiliang.qiu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Weiliang",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "weiliang.qiu@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘FSR.R’ ‘SR.R’ ‘helper_functions_model.R’ ‘plot.powerNLSEM.R’
    ‘smart_search.R’
Maintainer: ‘Daniel E. Weeks <weeks@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "E."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeks@pitt.edu")
as necessary.
Found the following HTML validation problems:
OwensQOwen.html:74:1 (OwensQOwen.Rd:33): Warning: <h3> anchor "_sec_note" already defined
checkRd: (-1) bira2.Rd:91: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:146: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:148: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:126: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:219: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:221: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:223: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:225: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:227: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:229: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:231: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:233: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:235: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:237: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:301: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:303: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:305: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:307: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:309: Escaped LaTeX specials: \&
checkRd: (-1) med_pn.Rd:129: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘save.R’
Maintainer: ‘Thorsten Pohlert <thorsten.pohlert@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorsten",
                    family = "Pohlert",
                    role = c("aut", "cre"),
                    email = "thorsten.pohlert@gmx.de")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:60:1 (inst/NEWS.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘David Hofmeyr <dhofmeyr@sun.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hofmeyr",
                    role = c("aut", "cre"),
                    email = "n.pavlidis@lancaster.ac.uk")
as necessary.
Found the following HTML validation problems:
hp_plot.html:55:1 (hp_plot.Rd:14): Warning: missing </ul> before </div>
node_plot.html:59:1 (node_plot.Rd:15): Warning: missing </ul> before </div>
tree_plot.html:59:1 (tree_plot.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Seongho Kim <biostatistician.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seongho",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "biostatistician.kim@gmail.com")
as necessary.
Found the following HTML validation problems:
negloglik_hp.html:55:1 (negloglik_hp.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Ben Youngman <b.youngman@exeter.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ben",
                      family = "Youngman",
                      role = c("aut", "cre"),
                      email = "b.youngman@exeter.ac.uk"),
               person(given = "Theo",
                      family = "Economou",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ProgPredLasso.Rd: cvCovEst
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = "Sengwee",
                      family = "Toh",
                      role = "aut",
                      email = "darren_toh@harvardpilgrim.org"))
as necessary.
Maintainer: ‘Taiane Schaedler Prass <taianeprass@gmail.com>’

The Description field contains
  <arXiv:2303.04754>) and has been found to outperform several other
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ccp_ppm.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{model}{Determines of model fit is such that there are p_{it}s (model=1) or
       |                                                               ^
checkRd: (-1) curve_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) gaussian_ppmx.Rd:143: Lost braces; missing escapes or markup?
   143 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) gaussian_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) ordinal_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) ordinal_ppmx.Rd:147: Lost braces; missing escapes or markup?
   147 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each sujbects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
Maintainer: ‘Jan Steinfeld <jan.d.steinfeld@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
JEvalMstep.html:81:1 (JEvalMstep.Rd:26): Warning: missing </ul> before </div>
VEstep.html:74:1 (VEstep.Rd:24): Warning: missing </ul> before </div>
correctTau.html:46:1 (correctTau.Rd:10): Warning: missing </ul> before </div>
mainVEMPar.html:93:1 (mainVEMPar.Rd:39): Warning: missing </ul> before </div>
tauUpdate.html:74:1 (tauUpdate.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
optimize_design.html:63:1 (optimize_design.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Jack G. Gambino <jack.gambino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jack", "G."),
                    family = "Gambino",
                    role = c("aut", "cre"),
                    email = "jack.gambino@gmail.com")
as necessary.
Maintainer: ‘Karla Mayra Perez <karla.mayra25@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Karla", "Mayra"),
                      family = "Perez",
                      role = c("aut", "cre"),
                      email = "karla.mayra25@gmail.com"),
               person(given = c("Luis", "E."),
                      family = "Nieto-Barajas",
                      role = "aut"))
as necessary.

The Description field contains
  (2019) <arXiv:1902.06020>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eun-Kyung",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "lee.eunk@gmail.com")
as necessary.
Maintainer: ‘Jessica J. Kraker <krakerjj@uwec.edu>’

The Description field contains
  mathematical derivations and applications can be found on arXiv:
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Guangbao Guo <ggb11111111@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guangbao",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "ggb11111111@163.com"),
               person(given = "Jiarui",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Jiaqiang Zhu <jiaqiang@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shiquan",
                      family = "Sun",
                      role = "aut"),
               person(given = "Jiaqiang",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "jiaqiang@umich.edu"),
               person(given = "Xiang",
                      family = "Zhou",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PQLseq.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pqrfe.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabor",
                      family = "Csardi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Sindre",
                      family = "Sorhus",
                      role = "aut"))
as necessary.
Maintainer: ‘Miron B. Kursa <m@mbq.me>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘praznik/libs/praznik.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Chong Wu <wuxx0845@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chong",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wuxx0845@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Claudio Zandonella Callegher <claudiozandonella@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘PRDA.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
  File ‘prospective.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
  File ‘retrospective.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PRDA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) PRDA.Rd:8: Lost braces; missing escapes or markup?
     8 | Given an hypothetical value of effect size, {PRDA} performs a prospective
       |                                             ^
checkRd: (-1) PRDA.Rd:22: Lost braces; missing escapes or markup?
    22 | In {PRDA} there are two main functions:
       |    ^
checkRd: (-1) PRDA.Rd:51: Lost braces; missing escapes or markup?
    51 | Alternatively, {PRDA} allows users to specify a distribution of plausible
       |                ^
Maintainer: ‘Lucas Venezian Povoa <lucasvenez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lucas", "Venezian"),
                      family = "Povoa",
                      role = c("aut", "cre"),
                      email = "lucasvenez@gmail.com"),
               person(given = c("Jonas", "Teixeira"),
                      family = "Nery",
                      role = "ctb"))
as necessary.
Running examples in ‘precintcon-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pplot.deciles
> ### Title: Plot deciles
> ### Aliases: pplot.deciles precintcon.plot.deciles
> ### Keywords: deciles precipitation
> 
> ### ** Examples
> 
> ## Loading the monthly precipitation serie.
> #
> data(monthly)
> 
> ## Performing the a set of statistical analysis
> #
> pplot.deciles(monthly)
Error:
! The `show_guide` argument of `layer()` was deprecated in ggplot2 2.0.0
  and is now defunct.
ℹ Please use the `show.legend` argument instead.
Backtrace:
    ▆
 1. └─precintcon::pplot.deciles(monthly)
 2.   └─precintcon::precintcon.plot.deciles(...)
 3.     └─base::mapply(...)
 4.       └─precintcon (local) `<fn>`(...)
 5.         └─ggplot2::geom_boxplot(...)
 6.           └─ggplot2::layer(...)
 7.             └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)")
 8.               └─lifecycle:::deprecate_stop0(msg)
 9.                 └─rlang::cnd_signal(...)
Execution halted
Found the following HTML validation problems:
theme_precisely.html:54:1 (theme_precisely.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Lorenz Walthert <lorenz.walthert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenz",
                    family = "Walthert",
                    role = c("aut", "cre"),
                    email = "lorenz.walthert@icloud.com")
as necessary.
Found the following HTML validation problems:
call_precommit.html:52:1 (call_precommit.Rd:12): Warning: missing </ul> before </div>
communicate_captured_call.html:46:1 (communicate_captured_call.Rd:10): Warning: missing </ul> before </div>
copy_artifacts.html:52:1 (copy_artifacts.Rd:13): Warning: missing </ul> before </div>
empty_on_cran.html:48:1 (empty_on_cran.Rd:10): Warning: missing </ul> before </div>
ensure_named.html:50:1 (ensure_named.Rd:12): Warning: missing </ul> before </div>
fallback_doc.html:40:1 (fallback_doc.Rd:7): Warning: missing </ul> before </div>
generate_uninstalled_pkg_name.html:46:1 (generate_uninstalled_pkg_name.Rd:10): Warning: missing </ul> before </div>
git_init.html:47:1 (git_init.Rd:10): Warning: missing </ul> before </div>
local_test_setup.html:68:1 (local_test_setup.Rd:25): Warning: missing </ul> before </div>
path_derive_precommit_exec_impl.html:48:1 (path_derive_precommit_exec_impl.Rd:11): Warning: missing </ul> before </div>
release_complete.html:46:1 (release_complete.Rd:10): Warning: missing </ul> before </div>
run_test_impl.html:99:1 (run_test_impl.Rd:47): Warning: missing </ul> before </div>
update_rev_in_config.html:54:1 (update_rev_in_config.Rd:12): Warning: missing </ul> before </div>
use_ci.html:71:1 (use_ci.Rd:29): Warning: missing </ul> before </div>
checkRd: (-1) diagnose_expressions.Rd:39: Lost braces
    39 | \item wrapping a function argument in two curly braces (e.g. `{{arg}} > 0) means
       |                                                               ^
File ‘precondition/libs/precondition.so’:
  Found non-API calls to R: ‘PRENV’, ‘R_PromiseExpr’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
expand.grid2.html:50:1 (expand.grid2.Rd:12): Warning: missing </ul> before </div>
gg_color_hue.html:46:1 (gg_color_hue.Rd:10): Warning: missing </ul> before </div>
is.mynumeric.html:50:1 (is.mynumeric.Rd:12): Warning: missing </ul> before </div>
myseq.html:50:1 (myseq.Rd:12): Warning: missing </ul> before </div>
rank2group2.html:50:1 (rank2group2.Rd:12): Warning: missing </ul> before </div>
revOperator.html:46:1 (revOperator.Rd:10): Warning: missing </ul> before </div>
slope2angle.html:113:1 (slope2angle.Rd:51): Warning: missing </ul> before </div>
Maintainer: ‘Suman Kundu <suman_math@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suman",
                      family = "Kundu",
                      role = c("aut", "cre"),
                      email = "suman_math@yahoo.com"),
               person(given = c("Yurii", "S."),
                      family = "Aulchenko",
                      role = "aut"),
               person(given = c("A.", "Cecile", "J.W."),
                      family = "Janssens",
                      role = "aut"))
as necessary.
Maintainer: ‘David Stanley <dstanley@uoguelph.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Stanley",
                    role = c("aut", "cre"),
                    email = "dstanley@uoguelph.ca")
as necessary.
Maintainer: ‘Marcel Miché <marcel.miche.predictme@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcel",
                    family = "Miché",
                    role = c("aut", "cre"),
                    email = "marcel.miche.predictme@gmail.com")
as necessary.
Found the following HTML validation problems:
run_app.html:46:1 (run_app.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.html:88:1 (plot.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Orestis Efthimiou <oremiou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Orestis",
                    family = "Efthimiou",
                    role = c("aut", "cre"),
                    email = "oremiou@gmail.com")
as necessary.
Maintainer: ‘Atesh Koul <atesh.koul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atesh",
                    family = "Koul",
                    role = c("aut", "cre"),
                    email = "atesh.koul@gmail.com")
as necessary.
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘PredPsych’
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PredPsych.Rcheck/00install.out’ for details.
Maintainer: ‘Amin Adibi <adibi@alumni.ubc.ca>’

The Description field contains
  <arXiv:2003.00316>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) dev_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:68-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:26-27: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
overall_power_binom.html:113:1 (overall_power_binom.Rd:58): Warning: missing </ul> before </div>
overall_sample_size_bin.html:123:1 (overall_sample_size_bin.Rd:64): Warning: missing </ul> before </div>
Maintainer: ‘John Lepird <jlepird@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lepird",
                    role = c("aut", "cre"),
                    email = "jlepird@alum.mit.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
dot-estimateEntropy.html:60:1 (dot-estimateEntropy.Rd:17): Warning: missing </ul> before </div>
dot-getLogIndifProb.html:54:1 (dot-getLogIndifProb.Rd:14): Warning: missing </ul> before </div>
dot-getLogStrictProb.html:54:1 (dot-getLogStrictProb.Rd:14): Warning: missing </ul> before </div>
dot-sampleEntropy.html:46:1 (dot-sampleEntropy.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Denis Mollison <denis.mollison@gmail.com>’

The Description field contains
  (2023) <arXiv:2303.15310>, (see also the package manual
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chin Soon Lim <chinsoon12@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chin", "Soon"),
                    family = "Lim",
                    role = c("aut", "cre"),
                    email = "chinsoon12@hotmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chinsoon12/PreKnitPostHTMLRender
which should likely be
  https://github.com/chinsoon12/PreKnitPostHTMLRender/issues
instead.
Found the following HTML validation problems:
eval_src.html:50:1 (eval_src.Rd:12): Warning: missing </ul> before </div>
post_html_render_proc.html:55:1 (post_html_render_proc.Rd:12): Warning: missing </ul> before </div>
pre_knit_proc.html:51:1 (pre_knit_proc.Rd:12): Warning: missing </ul> before </div>
run_code.html:50:1 (run_code.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Silvia Liverani <liveranis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "I."),
                      family = "Hastie",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Liverani",
                      role = c("aut", "cre"),
                      email = "liveranis@gmail.com"),
               person(given = c("Sylvia", "Richardson", "with", "contributions", "from", "Aurore", "J."),
                      family = "Lavigne",
                      role = "aut"),
               person(given = "Lucy",
                      family = "Leigh",
                      role = "aut"),
               person(given = "Lamiae",
                      family = "Azizi",
                      role = "aut"),
               person(given = "Xi",
                      family = "Liu",
                      role = "aut"),
               person(given = "Ruizhu",
                      family = "Huang",
                      role = "aut"),
               person(given = "Austin",
                      family = "Gratton",
                      role = "aut"),
               person(given = "Wei",
                      family = "Jing",
                      role = "aut"))
as necessary.
Maintainer: ‘Swamiji Pravedson <swamiji.pravedson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Swamiji",
                    family = "Pravedson",
                    role = c("aut", "cre"),
                    email = "swamiji.pravedson@gmail.com")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Josef Frank <josef.frank@gmx.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Frank",
                    role = c("aut", "cre"),
                    email = "josef.frank@gmx.ch")
as necessary.
checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
checkRd: (-1) format_number.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) format_number.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) format_number.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gustavo Soutinho <gustavosoutinho@sapo.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gustavo",
                      family = "Soutinho",
                      role = c("aut", "cre"),
                      email = "gustavosoutinho@sapo.pt"),
               person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Oliveira",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
add_y_axis.html:71:1 (add_y_axis.Rd:25): Warning: missing </ul> before </div>
boxplot.prettyB.html:100:1 (boxplot.prettyB.Rd:55): Warning: missing </ul> before </div>
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:210:1 (inst/NEWS.Rd:100): Warning: missing </ul> before </div>
NEWS.html:61:1 (inst/NEWS.Rd:24): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:81:1 (inst/NEWS.Rd:34): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:100:1 (inst/NEWS.Rd:44): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:123:1 (inst/NEWS.Rd:58): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:140:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:155:1 (inst/NEWS.Rd:76): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:171:1 (inst/NEWS.Rd:84): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:190:1 (inst/NEWS.Rd:94): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Dewey Dunnington <dewey@fishandwhistle.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dewey",
                    family = "Dunnington",
                    role = c("aut", "cre"),
                    email = "dewey@fishandwhistle.net")
as necessary.
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon",
                      role = c("aut", "cre"),
                      email = "drjimlemon@gmail.com"),
               person(given = "Philippe",
                      family = "Grosjean",
                      role = "aut",
                      email = "phgrosjean@sciviews.org"))
as necessary.
Found the following files/directories:
  ‘hista.png’ ‘plotcd.png’ ‘test.R’ ‘test.html’ ‘testR2html.R’
  ‘testglm.csv’ ‘testglm.html’ ‘testglm.tab’
Maintainer: ‘Brecht Devleesschauwer <brechtdv@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘estimate_risk.Rd’
Found the following HTML validation problems:
theme_prevR.html:48:1 (theme_prevR.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ankur",
                    family = "Chakravarthy",
                    role = c("aut", "cre"),
                    email = "ankur.chakravarthy.10@ucl.ac.uk")
as necessary.
Maintainer: ‘Zichong Li <zichongli5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zichong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "zichongli5@gmail.com"),
               person(given = "Qianli",
                      family = "Shen",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
dot-dpcens.html:83:1 (dot-dpcens.Rd:37): Warning: missing </ul> before </div>
dot-name_deprecation.html:71:1 (dot-name_deprecation.Rd:26): Warning: missing </ul> before </div>
dot-ppcens.html:77:1 (dot-ppcens.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘David Schruth <data@anthropoidea.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Schruth",
                      role = "cre",
                      email = "data@anthropoidea.org"),
               person(given = "Marc",
                      family = "Myers",
                      role = "ctb"),
               person(given = "Noel",
                      family = "Rowe",
                      role = "aut"))
as necessary.
Maintainer: ‘Florian Privé <florian.prive.21@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
Found the following HTML validation problems:
primefactr-package.html:40:1 (primefactr-package.Rd:8): Warning: missing </ul> before </div>
Maintainer: ‘Ziwei Zhu <ziweiz@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziwei",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "ziweiz@umich.edu"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  component analysis with heterogeneous missingness. <arXiv:1906.12125>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hank Stevens <hank.stevens@miamioh.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M", "H", "H"),
                      family = "Stevens",
                      role = "aut"),
               person(given = "Hank",
                      family = "Stevens",
                      role = "cre",
                      email = "hank.stevens@miamioh.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) alogistic.Rd:20: Lost braces
    20 | The user does not put these directly into this function, but rather uses code{ode} in the \code{deSolve} package.
       |                                                                              ^
Found the following HTML validation problems:
clustalo.html:64:1 (clustalo.Rd:18): Warning: missing </ul> before </div>
identify.primerTree_plot.html:53:1 (identify.primerTree_plot.Rd:13): Warning: missing </ul> before </div>
parse_primer_hits.html:47:1 (parse_primer_hits.Rd:11): Warning: missing </ul> before </div>
seq_lengths.primerTree.html:51:1 (seq_lengths.primerTree.Rd:12): Warning: missing </ul> before </div>
File ‘PRIMME/libs/PRIMME.so’:
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘primme/libprimme.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (HenrikBengtsson), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
  Authors@R: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (github: HenrikBengtsson), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
Found the following HTML validation problems:
deprecated.html:58:1 (deprecated.Rd:22): Warning: missing </ul> before </div>
checkRd: (-1) findbeta.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{lower.v}{logical, if TRUE the specified percentile.value is the upper limit for the mean (or the median or the mode) at the specified confidence level (percentile). If {FALSE} the specified percentile.value is the lower limit for the mean (or the median or the mode) at the specified confidence level (percentile). The default is FALSE.}
       |                                                                                                                                                                               ^
Maintainer: ‘Roman Hornung <hornung@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Klau",
                      role = "aut"),
               person(given = "Roman",
                      family = "Hornung",
                      role = c("aut", "cre"),
                      email = "hornung@ibe.med.uni-muenchen.de"),
               person(given = "Alina",
                      family = "Bauer",
                      role = "aut"),
               person(given = "Jonas",
                      family = "Hagenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Tammo Krueger <tammokrueger@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tammo",
                      family = "Krueger",
                      role = c("aut", "cre"),
                      email = "tammokrueger@googlemail.com"),
               person(given = "Nicole",
                      family = "Kraemer",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
evaluation_table.html:50:1 (evaluation_table.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Danilo Freire <danilofreire@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
wpb_region_list.html:51:1 (wpb_region_list.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Prithul Chaturvedi <prithulc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prithul",
                    family = "Chaturvedi",
                    role = c("aut", "cre"),
                    email = "prithulc@gmail.com")
as necessary.
Maintainer: ‘Staal A. Vinterbo <Staal.Vinterbo@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Staal", "A."),
                    family = "Vinterbo",
                    role = c("aut", "cre"),
                    email = "Staal.Vinterbo@ntnu.no")
as necessary.
Found the following HTML validation problems:
GPsInElevGaps.html:80:1 (GPsInElevGaps.Rd:33): Warning: missing </ul> before </div>
changewindowSize.html:56:1 (changewindowSize.Rd:16): Warning: missing </ul> before </div>
classifSumm.html:66:1 (classifSumm.Rd:22): Warning: missing </ul> before </div>
collectBestMatchInfo.html:62:1 (collectBestMatchInfo.Rd:18): Warning: missing </ul> before </div>
contigChunks.html:53:1 (contigChunks.Rd:15): Warning: missing </ul> before </div>
elevOrGapClassif.html:53:1 (elevOrGapClassif.Rd:14): Warning: missing </ul> before </div>
fullElevGap.html:66:1 (fullElevGap.Rd:21): Warning: missing </ul> before </div>
fullElevGapShrink.html:92:1 (fullElevGapShrink.Rd:39): Warning: missing </ul> before </div>
geneAnnotationPlot.html:91:1 (geneAnnotationPlot.Rd:38): Warning: missing </ul> before </div>
genomeChunks.html:53:1 (genomeChunks.Rd:15): Warning: missing </ul> before </div>
linkChunks.html:65:1 (linkChunks.Rd:20): Warning: missing </ul> before </div>
noPattern.html:49:1 (noPattern.Rd:11): Warning: missing </ul> before </div>
partialElevGap.html:63:1 (partialElevGap.Rd:19): Warning: missing </ul> before </div>
partialElevGapShrink.html:92:1 (partialElevGapShrink.Rd:39): Warning: missing </ul> before </div>
patternBuilder.html:53:1 (patternBuilder.Rd:14): Warning: missing </ul> before </div>
patternMatcher.html:84:1 (patternMatcher.Rd:33): Warning: missing </ul> before </div>
patternTranslator.html:65:1 (patternTranslator.Rd:20): Warning: missing </ul> before </div>
pileupFormatter.html:52:1 (pileupFormatter.Rd:13): Warning: missing </ul> before </div>
removeNoPatterns.html:48:1 (removeNoPatterns.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
inf_conformal-butcher.html:97:1 (inf_conformal-butcher.Rd:73): Warning: missing </ul> before </div>
required_pkgs.cal_object.html:80:1 (required_pkgs.cal_object.Rd:41): Warning: missing </ul> before </div>
required_pkgs.int_conformal_cv.html:62:1 (required_pkgs.int_conformal_cv.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Jim Albert <albert@bgsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jim",
                    family = "Albert",
                    role = c("aut", "cre"),
                    email = "albert@bgsu.edu")
as necessary.
Maintainer: ‘Junhui Li <junhuili@cau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhui",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "junhuili@cau.edu.cn")
as necessary.
Maintainer: ‘Alexander McLain <mclaina@mailbox.sc.edu>’

The Description field contains
  Zgodic, and Bondell (2022) <arXiv:2209.08139>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tim Liao <tfliao@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Liao",
                    role = c("aut", "cre"),
                    email = "tfliao@illinois.edu")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Found the following HTML validation problems:
exams.html:55:1 (exams.Rd:15): Warning: missing </ul> before </div>
metricsgrades.html:60:1 (metricsgrades.Rd:17): Warning: missing </ul> before </div>
website.html:56:1 (website.Rd:15): Warning: missing </ul> before </div>
widgets.html:59:1 (widgets.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Giuliana Cortese <gcortese@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giuliana",
                    family = "Cortese",
                    role = c("aut", "cre"),
                    email = "gcortese@stat.unipd.it")
as necessary.
Maintainer: ‘Rishabh Gupta <rishabh.uk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rishabh",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "rishabh.uk@gmail.com"),
               person(given = c("Nicholas", "J."),
                      family = "Matzke",
                      role = "aut"))
as necessary.
checkRd: (-1) proc.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) proc.Rd:28: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
export_graph.html:76:1 (export_graph.Rd:30): Warning: missing </ul> before </div>
export_map.html:76:1 (export_map.Rd:30): Warning: missing </ul> before </div>
frequency.html:60:1 (frequency.Rd:20): Warning: missing </ul> before </div>
get_activities.html:48:1 (get_activities.Rd:13): Warning: missing </ul> before </div>
layout_pm.html:54:1 (layout_pm.Rd:14): Warning: missing </ul> before </div>
performance.html:75:1 (performance.Rd:29): Warning: missing </ul> before </div>
precedence_matrix_absolute.html:52:1 (precedence_matrix_absolute.Rd:12): Warning: missing </ul> before </div>
processMapOutput.html:56:1 (processMapOutput.Rd:16): Warning: missing </ul> before </div>
renderProcessMap.html:55:1 (renderProcessMap.Rd:15): Warning: missing </ul> before </div>
render_map.html:84:1 (render_map.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘gert.janssenswillen@uhasselt.be <gert.janssenswillen@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gert",
                      family = "Janssenswillen",
                      role = "aut"),
               person(family = "gert.janssenswillen@uhasselt.be",
                      role = "cre",
                      email = "gert.janssenswillen@uhasselt.be"))
as necessary.
Found the following HTML validation problems:
activity_dashboard.html:46:1 (activity_dashboard.Rd:10): Warning: missing </ul> before </div>
performance_dashboard.html:46:1 (performance_dashboard.Rd:10): Warning: missing </ul> before </div>
resource_dashboard.html:46:1 (resource_dashboard.Rd:10): Warning: missing </ul> before </div>
rework_dashboard.html:46:1 (rework_dashboard.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_vocabulary.html:46:1 (get_vocabulary.Rd:10): Warning: missing </ul> before </div>
reexports.html:100:1 (reexports.Rd:39): Warning: missing </ul> before </div>
Maintainer: ‘Eric Coissac <eric.coissac@metabarcoding.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eric",
                      family = "Coissac",
                      role = c("aut", "cre"),
                      email = "eric.coissac@metabarcoding.org"),
               person(given = "Christelle",
                      family = "Gonindard-Melodelima",
                      role = "aut"))
as necessary.
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Gabriele Rovigatti <gabriele.rovigatti@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Rovigatti",
                    role = c("aut", "cre"),
                    email = "gabriele.rovigatti@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
checkCauses.html:50:1 (checkCauses.Rd:12): Warning: missing </ul> before </div>
head.Hist.html:47:1 (head.Hist.Rd:10): Warning: missing </ul> before </div>
is.na.Hist.html:48:1 (is.na.Hist.Rd:10): Warning: missing </ul> before </div>
str.Hist.html:47:1 (str.Hist.Rd:10): Warning: missing </ul> before </div>
sub-.Hist.html:60:1 (sub-.Hist.Rd:16): Warning: missing </ul> before </div>
subset.Hist.html:64:1 (subset.Hist.Rd:18): Warning: missing </ul> before </div>
tail.Hist.html:47:1 (tail.Hist.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘fareprim.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘fisher.Rd’:
    https://doi.org/10.1007/BF00158354
  File ‘hicksmoorsteen.Rd’:
    https://doi.org/10.1111/j.1467-9957.2010.02169.x
    https://doi.org/10.1111/j.1467-8489.2010.00512.x
  File ‘lowe.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘usagri.Rd’:
    https://doi.org/10.2307/1244458
    https://doi.org/10.1111/j.0002-9092.2004.00683.x
checkRd: (-1) paasche.Rd:91: Lost braces
    91 |     \code{OSME} \tab Output-oriented scale-mix efficiency score \emph{(code{orientation = "out"})}\cr
       |                                                                            ^
Found the following HTML validation problems:
col_labels.html:46:1 (col_labels.Rd:10): Warning: missing </ul> before </div>
ddecker.html:50:1 (ddecker.Rd:12): Warning: missing </ul> before </div>
find_col_level.html:46:1 (find_col_level.Rd:10): Warning: missing </ul> before </div>
find_row_level.html:46:1 (find_row_level.Rd:10): Warning: missing </ul> before </div>
fluct.html:58:1 (fluct.Rd:16): Warning: missing </ul> before </div>
flucts.html:46:1 (flucts.Rd:10): Warning: missing </ul> before </div>
hbar.html:58:1 (hbar.Rd:16): Warning: missing </ul> before </div>
hspine.html:58:1 (hspine.Rd:16): Warning: missing </ul> before </div>
mosaic.html:48:1 (mosaic.Rd:11): Warning: missing </ul> before </div>
nested.html:48:1 (nested.Rd:11): Warning: missing </ul> before </div>
row_labels.html:46:1 (row_labels.Rd:10): Warning: missing </ul> before </div>
scale_x_product.html:46:1 (scale_x_product.Rd:10): Warning: missing </ul> before </div>
scale_y_product.html:46:1 (scale_y_product.Rd:10): Warning: missing </ul> before </div>
spine.html:58:1 (spine.Rd:16): Warning: missing </ul> before </div>
stacked.html:50:1 (stacked.Rd:12): Warning: missing </ul> before </div>
tile.html:55:1 (tile.Rd:14): Warning: missing </ul> before </div>
vbar.html:58:1 (vbar.Rd:16): Warning: missing </ul> before </div>
vspine.html:58:1 (vspine.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
install_go.html:56:1 (install_go.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
xNetSubscribe.html:53:1 (xNetSubscribe.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) plot.profileModel.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) profileModel.Rd:277: Escaped LaTeX specials: \&
Maintainer: ‘Christopher David Desjardins <cddesjardins@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Okan",
                      family = "Bulut",
                      role = "aut",
                      email = "okanbulut84@gmail.com"),
               person(given = c("Christopher", "David"),
                      family = "Desjardins",
                      role = c("aut", "cre"),
                      email = "cddesjardins@gmail.com"))
as necessary.
checkRd: (-1) PS.Rd:9: Lost braces
     9 |                 \item{CD}{}{Character disorder scale score}
       |                            ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘how-to-use.Rmd’ using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘how-to-use.Rmd’

--- re-building ‘plots-gallery.Rmd’ using rmarkdown

Quitting from plots-gallery.Rmd:1148-1150 [unnamed-chunk-47]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'plots-gallery.Rmd' failed with diagnostics:
Problem while computing stat.
ℹ Error occurred in the 1st layer.
Caused by error in `compute_layer()`:
! The package "MASS" is required for calculating 2D density.
--- failed re-building ‘plots-gallery.Rmd’

SUMMARY: processing the following file failed:
  ‘plots-gallery.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
autoplot.batch.html:51:1 (autoplot.batch.Rd:12): Warning: missing </ul> before </div>
autoplot.online.html:51:1 (autoplot.online.Rd:12): Warning: missing </ul> before </div>
init_experts_list.html:61:1 (init_experts_list.Rd:18): Warning: missing </ul> before </div>
make_basis_mats.html:98:1 (make_basis_mats.Rd:42): Warning: missing </ul> before </div>
make_hat_mats.html:109:1 (make_hat_mats.Rd:49): Warning: missing </ul> before </div>
make_knots.html:68:1 (make_knots.Rd:20): Warning: missing </ul> before </div>
plot.batch.html:51:1 (plot.batch.Rd:12): Warning: missing </ul> before </div>
plot.online.html:51:1 (plot.online.Rd:12): Warning: missing </ul> before </div>
post_process_model.html:54:1 (post_process_model.Rd:12): Warning: missing </ul> before </div>
print.batch.html:51:1 (print.batch.Rd:12): Warning: missing </ul> before </div>
print.online.html:51:1 (print.online.Rd:12): Warning: missing </ul> before </div>
summary.online.html:51:1 (summary.online.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"),
               person(given = "Riad",
                      family = "Jarjour",
                      role = "aut"))
as necessary.
checkRd: (-1) proftools-package.Rd:40: Lost braces
    40 |   by the code{kcachegrind} program available on some operating
       |              ^
Found the following HTML validation problems:
parse_rprof.html:53:1 (parse_rprof.Rd:15): Warning: missing </ul> before </div>
print.profvis.html:70:1 (print.profvis.Rd:23): Warning: missing </ul> before </div>
profvisOutput.html:68:1 (profvisOutput.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
handler_newline.html:71:1 (handler_newline.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create.template.html:54:1 (create.template.Rd:15): Warning: missing </ul> before </div>
internal.var.diff.from.html:51:1 (internal.var.diff.from.Rd:12): Warning: missing </ul> before </div>
migrate.template.html:47:1 (migrate.template.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) prolific_prescreener.Rd:254: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_prescreener.Rd:255: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:243: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:244: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
api_access.html:130:1 (api_access.Rd:97): Warning: <h5> anchor "+2AReturn-Value+2A" already defined
api_access.html:137:1 (api_access.Rd:102): Warning: <h5> anchor "+2AUsage+2A" already defined
Maintainer: ‘Francesco Vidoli <fvidoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Resce",
                      role = "aut"),
               person(given = "Menelaos",
                      family = "Tasiou",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Vidoli",
                      role = c("aut", "cre"),
                      email = "fvidoli@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Austria.Rd’:
    https://doi.org/10.1016/j.jclepro.2019.02.115
Found the following HTML validation problems:
WorkQueue.html:118:1 (WorkQueue.Rd:73): Warning: <h5> anchor "Usage" already defined
WorkQueue.html:124:1 (WorkQueue.Rd:77): Warning: <h5> anchor "Arguments" already defined
WorkQueue.html:147:1 (WorkQueue.Rd:90): Warning: <h5> anchor "Usage" already defined
WorkQueue.html:153:1 (WorkQueue.Rd:94): Warning: <h5> anchor "Arguments" already defined
resolve.html:55:1 (resolve.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) impute_plot.Rd:32: Lost braces; missing escapes or markup?
    32 | \item{global}{Logical. If \code{TRUE} ({default}), a global density plot is
       |                                        ^
Maintainer: ‘Paul E. Promote <promotedev@alteryx.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "E."),
                    family = "Promote",
                    role = c("aut", "cre"),
                    email = "promotedev@alteryx.com")
as necessary.
Found the following HTML validation problems:
add.dependency.html:78:1 (add.dependency.Rd:27): Warning: missing </ul> before </div>
add.metadata.html:54:1 (add.metadata.Rd:14): Warning: missing </ul> before </div>
capture.src.html:50:1 (capture.src.Rd:12): Warning: missing </ul> before </div>
is.https.html:48:1 (is.https.Rd:11): Warning: missing </ul> before </div>
promote.get.html:50:1 (promote.get.Rd:12): Warning: missing </ul> before </div>
promote.post.html:64:1 (promote.post.Rd:20): Warning: missing </ul> before </div>
promote.spider.block.html:51:1 (promote.spider.block.Rd:13): Warning: missing </ul> before </div>
promote.spider.func.html:46:1 (promote.spider.func.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘complete_chat.R’ ‘complete_prompt.R’ ‘format_prompt.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_url.R’
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "Michael", "O"),
                      family = "Ranola",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Lange",
                      role = "aut"),
               person(given = "Steve",
                      family = "Horvath",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Maintainer: ‘Maria Alvarez <maria.alvarez@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Alvarez",
                      role = c("aut", "cre"),
                      email = "maria.alvarez@uvigo.es"),
               person(given = "Javier",
                      family = "Roca-Pardinas",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
cluster_iss.html:57:1 (cluster_iss.Rd:20): Warning: missing </ul> before </div>
dot-expand_txt.html:58:1 (dot-expand_txt.Rd:17): Warning: missing </ul> before </div>
dot-get_phi_tilde.html:46:1 (dot-get_phi_tilde.Rd:10): Warning: missing </ul> before </div>
dot-rcorrect.html:72:1 (dot-rcorrect.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Daan Seynaeve <daan.seynaeve@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Daan",
                      family = "Seynaeve",
                      role = c("aut", "cre"),
                      email = "daan.seynaeve@openanalytics.eu"),
               person(given = c("based", "on", "read.dcf", "by", "R", "Core", "Development"),
                      family = "Team",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
df_for_plotting.html:50:1 (df_for_plotting.Rd:12): Warning: missing </ul> before </div>
fit.prophet.html:62:1 (fit.prophet.Rd:15): Warning: missing </ul> before </div>
validate_column_name.html:68:1 (validate_column_name.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Osama Mahmoud <ofamah@essex.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osama",
                      family = "Mahmoud",
                      role = c("aut", "cre"),
                      email = "ofamah@essex.ac.uk"),
               person(given = "Andrew",
                      family = "Harrison",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Zardad",
                      family = "Khan",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Travis Loux <travis.loux@slu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Travis",
                    family = "Loux",
                    role = c("aut", "cre"),
                    email = "travis.loux@slu.edu")
as necessary.
Maintainer: ‘Nadine Fischoff <nadine.khattak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nadine",
                    family = "Fischoff",
                    role = c("aut", "cre"),
                    email = "nadine.khattak@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘getBills.Rd’:
    \keyword{api,}
    \keyword{congress,}
    \keyword{propublica,}
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Xi", "LUO", "with", "contributions", "from", "Dylan"),
                      family = "Small",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Vikaas",
                      family = "Sohal",
                      role = "aut"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Found the following HTML validation problems:
bitAND.html:50:1 (bitAND.Rd:12): Warning: missing </ul> before </div>
convCppM.html:50:1 (convCppM.Rd:12): Warning: missing </ul> before </div>
get_msc_coeff.html:50:1 (get_msc_coeff.Rd:12): Warning: missing </ul> before </div>
pkg_info.html:46:1 (pkg_info.Rd:10): Warning: missing </ul> before </div>
resample_fwhm.html:58:1 (resample_fwhm.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                  ^
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                                      ^
Found the following HTML validation problems:
herb_check.html:59:1 (herb_check.Rd:17): Warning: missing </ul> before </div>
struc_addSimData.html:57:1 (struc_addSimData.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nba_data.R’ ‘nba_data.Rd’ ‘nfl_data.R’ ‘nhl_data.R’ ‘nhl_data.Rd’
Maintainer: ‘Simon Liles <simon@quantknot.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Liles",
                    role = c("aut", "cre"),
                    email = "simon@quantknot.com")
as necessary.
Maintainer: ‘Arthur Leroy <arthur.leroy.pro@gmail.com>’

The Description field contains
  <arXiv:2307.08975>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot.protoclust.html:53:1 (plot.protoclust.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
geobuf.html:69:1 (geobuf.Rd:25): Warning: missing </ul> before </div>
mapbox.html:63:1 (mapbox.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Przemysław Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  available at http://biecek.pl/BetaBit/Warsaw.  It's a part of Beta and
  http://biecek.pl/BetaBit.
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
dynGraph.html:46:1 (dynGraph.Rd:10): Warning: missing </ul> before </div>
fixUploadedFilesNames.html:46:1 (fixUploadedFilesNames.Rd:10): Warning: missing </ul> before </div>
get_cut_from_merge_id.html:57:1 (get_cut_from_merge_id.Rd:17): Warning: missing </ul> before </div>
get_paths_from_cut.html:54:1 (get_paths_from_cut.Rd:13): Warning: missing </ul> before </div>
load_obj.html:46:1 (load_obj.Rd:10): Warning: missing </ul> before </div>
protoclust_to_json.html:46:1 (protoclust_to_json.Rd:10): Warning: missing </ul> before </div>
selectJS.html:46:1 (selectJS.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.
checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cell.R’ ‘command.R’ ‘instrument.R’ ‘io.R’ ‘modplug.R’ ‘note.R’
    ‘render.R’ ‘s3.R’ ‘select_ops.R’
checkRd: (-1) pr_stem_sentences.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capital letters 
       |                       ^
checkRd: (-1) pr_stem_words.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capitals letters 
       |                       ^
checkRd: (-1) proust_sentiments.Rd:7: Lost braces; missing escapes or markup?
     7 | See the {rfeel} package now: http://github.com/ColinFay/rfeel}
       |         ^
checkRd: (-1) proust_sentiments.Rd:20: Lost braces; missing escapes or markup?
    20 | See the {rfeel} package now: http://github.com/ColinFay/rfeel
       |         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_proverbs.R’
Found the following HTML validation problems:
crossprod.html:65:1 (crossprod.Rd:23): Warning: missing </ul> before </div>
File ‘proxy/libs/proxy.so’:
  Found non-API calls to R: ‘OBJECT’, ‘Rf_NonNullStringMatch’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Yi Zhao <zhayi@umich.edu>’

The Description field contains
  <arXiv:2105.03993>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘M. S. Islam <shahed-sta@sust.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "S."),
                    family = "Islam",
                    role = c("aut", "cre"),
                    email = "shahed-sta@sust.edu")
as necessary.
File ‘pryr/libs/pryr.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘NAMED’, ‘PRCODE’,
    ‘PRENV’, ‘PRVALUE’, ‘Rf_findVarInFrame3’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
as.envlist.html:46:1 (as.envlist.Rd:10): Warning: missing </ul> before </div>
explicit.html:56:1 (explicit.Rd:17): Warning: missing </ul> before </div>
print.envlist.html:61:1 (print.envlist.Rd:18): Warning: missing </ul> before </div>
standardise_call.html:50:1 (standardise_call.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘boot.weighting.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PSAboot.Rd: Match
  balance.matching.Rd: cv.trans.psa
  boot.ctree.Rd: cv.trans.psa
  boot.matching.Rd: cv.trans.psa, Match
  boot.matchit.Rd: cv.trans.psa
  boot.rpart.Rd: cv.trans.psa
  boot.strata.Rd: cv.trans.psa
  boot.weighting.Rd: cv.trans.psa
  boxplot.PSAboot.balance.Rd: facet_wrap
  hist.PSAboot.Rd: geom_histogram
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
calculate_ps_weights.html:60:1 (calculate_ps_weights.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Kyu Ha Lee <klee@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee@hsph.harvard.edu"),
               person(given = "Sounak",
                      family = "Chakraborty",
                      role = "aut"),
               person(given = "Harrison",
                      family = "Reeder",
                      role = "aut"),
               person(given = c("", "Jianguo"),
                      family = "Sun",
                      role = "aut",
                      comment = "Tony"))
as necessary.
Found the following HTML validation problems:
create_alpha_string.html:56:1 (create_alpha_string.Rd:19): Warning: missing </ul> before </div>
create_tau_string.html:52:1 (create_tau_string.Rd:17): Warning: missing </ul> before </div>
eval_constraints.html:49:1 (eval_constraints.Rd:13): Warning: missing </ul> before </div>
get_prior_string_covariates.html:46:1 (get_prior_string_covariates.Rd:10): Warning: missing </ul> before </div>
trim_cols.html:56:1 (trim_cols.Rd:19): Warning: missing </ul> before </div>
trim_rows.html:56:1 (trim_rows.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
apply_mcmc.html:162:1 (apply_mcmc.Rd:87): Warning: missing </ul> before </div>
fix_col_names.html:50:1 (fix_col_names.Rd:12): Warning: missing </ul> before </div>
ps_message.html:50:1 (ps_message.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) qpc.Rd:43: Lost braces
    43 | S{Sulewski, P. (2020). \emph{Normal Distribution with Plasticizing Component,} Communications in Statistics ? Theory and Method 51(11), 3806-3835.}
       |  ^
Found the following HTML validation problems:
rcpp_ctap_simple.html:50:1 (rcpp_ctap_simple.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
replace_nas.html:46:1 (replace_nas.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pseudohouseholds.R’
Found the following HTML validation problems:
pool_performance_internal.html:61:1 (pool_performance_internal.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Neeraj Bokde <neerajdhanraj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neeraj",
                      family = "Bokde",
                      role = c("aut", "cre"),
                      email = "neerajdhanraj@gmail.com"),
               person(given = "Gualberto",
                      family = "Asencio-Cortes",
                      role = "aut"),
               person(given = "Francisco",
                      family = "Martinez-Alvarez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data1.Rd:14: Lost braces
    14 | The data set from {AbouRizk, S.M., Halpin, D.W., Wilson, J. R. (1994). \emph{Fitting beta distributions based on sample data.} Journal of Construction Engineering and Management 120(2), 288–305.}
       |                   ^
checkRd: (-1) data2.Rd:14: Lost braces; missing escapes or markup?
    14 | The data set presents the height of 99 five-year-old British boys in cm downloaded from {http://www.mas.ncl.ac.uk/njnsm/medfac/docs/intro.pdf.}
       |                                                                                         ^
Maintainer: ‘Oleg Sysoev <Oleg.Sysoev@liu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oleg",
                      family = "Sysoev",
                      role = c("aut", "cre"),
                      email = "oleg.sysoev@liu.se"),
               person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = "aut"),
               person(given = c("Katarina", "Ekholm"),
                      family = "Selling",
                      role = "aut"),
               person(given = "Lotta",
                      family = "Ekstrom",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plot.psicaTree.html:58:1 (plot.psicaTree.Rd:15): Warning: missing </ul> before </div>
predict.psicaTree.html:56:1 (predict.psicaTree.Rd:15): Warning: missing </ul> before </div>
print.psicaTree.html:51:1 (print.psicaTree.Rd:12): Warning: missing </ul> before </div>
prune.psicaTree.html:57:1 (prune.psicaTree.Rd:16): Warning: missing </ul> before </div>
snip.psicaTree.html:52:1 (snip.psicaTree.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) table1.Rd:14: Lost braces
    14 | The first data set from {Sulewski, P. (2017) \emph{A new test for independence in 2x2 contingency tables,} Acta Universitatis Lodziensis. Folia Oeconomica, 4(330), 55–75}
       |                         ^
checkRd: (-1) table3.Rd:14: Lost braces
    14 | The third data set from {Sulewski, P. (2021). \emph{Logarithmic Minimum Test for Independence in Three Way Con-tingency Table of Small Sizes.} Journal of Statistical Computation and Simulation 91(13), 2780-2799}
       |                         ^
Maintainer: ‘Claus Bendtsen <papyrus.bendtsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claus",
                      family = "Bendtsen.",
                      role = "aut",
                      email = "papyrus.bendtsen@gmail.com"),
               person(given = "Claus",
                      family = "Bendtsen",
                      role = "cre",
                      email = "papyrus.bendtsen@gmail.com"))
as necessary.
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Jim", "Ramsey.", "R", "port", "by", "Brian", "Ripley"),
                      family = "<Brian.Ripley@R-project.org>.",
                      role = "aut",
                      email = "Brian.Ripley@R-project.org"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "cre",
                      email = "Brian.Ripley@R-project.org"))
as necessary.
Maintainer: ‘Andre M. de Roos <A.M.deRoos@uva.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lenard Dome <lenarddome@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘psp.Rd’:
    \keyword{computational modelling; parameter space  [TRUNCATED]
  File ‘pspGlobal.Rd’:
    \keyword{computational modelling; parameter space  [TRUNCATED]
  File ‘psp_global.Rd’:
    \keyword{computational modelling; parameter space; [TRUNCATED]
Maintainer: ‘Haiyan Wang <hwang@ksu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luann", "C."),
                      family = "Jung",
                      role = "aut"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "hwang@ksu.edu"),
               person(given = "Diego",
                      family = "Maldonado",
                      role = "aut"),
               person(given = "Sharad",
                      family = "Silwal",
                      role = "aut"),
               person(given = "Siti",
                      family = "Tolos",
                      role = "aut"),
               person(given = "Suojin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘summary.riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testConstancy.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testEquality.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Qing",
                      family = "Fei",
                      role = "aut"))
as necessary.
Maintainer: ‘Blondeau Da Silva Stephane <blondeaudasilva@xlim.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane.",
                      role = "aut"),
               person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane",
                      role = "cre",
                      email = "blondeaudasilva@xlim.fr"))
as necessary.
Maintainer: ‘Pedro H. C. Sant'Anna <pedro.h.santanna@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pedro", "H.", "C."),
                      family = "Sant'Anna",
                      role = c("aut", "cre"),
                      email = "pedro.h.santanna@vanderbilt.edu"),
               person(given = "Xiaojun",
                      family = "Song",
                      role = "aut",
                      email = "sxj@gsm.pku.edu.cn"))
as necessary.
Maintainer: ‘Bo Liu <bl226@duke.edu>’

The Description field contains
  See Liu and Li (2023) <arXiv:2304.02740> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PStrata-package.Rd: lme4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PSTf-class.Rd: TraMineR
  cprob.Rd: TraMineR
  generate.Rd: TraMineR
  plot-PSTr.Rd: seqdef
  pmine.Rd: TraMineR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Huzhang Mao <huzhangmao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huzhang",
                      family = "Mao",
                      role = c("aut", "cre"),
                      email = "huzhangmao@gmail.com"),
               person(given = "Liang",
                      family = "Li",
                      role = "aut",
                      email = "LLi15@mdanderson.org"))
as necessary.
Found the following HTML validation problems:
confint.html:53:1 (confint.Rd:13): Warning: missing </ul> before </div>
print.html:80:1 (print.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
Found the following significant warnings:
  02_algebrahelpers_RcppHelpers.cpp:297:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  06_ULS_fitfunction_cpp.cpp:62:11: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  06_ULS_gradient_cpp.cpp:63:11: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  06_WLS_Wmat.cpp:39:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  06_WLS_Wmat.cpp:39:49: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  06_WLS_Wmat.cpp:47:23: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  06_WLS_Wmat.cpp:55:27: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  14_varcov_derivatives_cpp.cpp:222:11: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  14_varcov_derivatives_cpp.cpp:245:15: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  14_varcov_derivatives_cpp.cpp:250:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/psychonetrics.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
checkRd: (-1) dprime.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
is.psychobject.html:46:1 (is.psychobject.Rd:10): Warning: missing </ul> before </div>
1623,1626d1622
< Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
< ℹ Please use the `linewidth` argument instead.
< ℹ The deprecated feature was likely used in the likert package.
<   Please report the issue at <https://github.com/jbryer/likert/issues>.
'::' or ':::' imports not declared from:
  ‘colorspace’ ‘psychomix’
'library' or 'require' calls not declared from:
  ‘car’ ‘lmtest’ ‘psychomix’ ‘psychotree’ ‘strucchange’
Found the following HTML validation problems:
Promax.html:159:1 (Promax.Rd:97): Warning: <h3> anchor "_sec_note" already defined
best.scales.html:272:1 (best.scales.Rd:172): Warning: <h3> anchor "_sec_note" already defined
cortest.mat.html:129:1 (cortest.mat.Rd:69): Warning: <h3> anchor "_sec_note" already defined
fa.parallel.html:227:1 (fa.parallel.Rd:133): Warning: <h3> anchor "_sec_note" already defined
skew.html:136:1 (skew.Rd:69): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
requiredPackages.html:63:1 (requiredPackages.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
SetUnitSystem.html:47:1 (SetUnitSystem.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coefficent_to_p.html:54:1 (coefficent_to_p.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Ken Knoblauch <ken.knoblauch@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Knoblauch",
                      role = "aut"),
               person(given = "Ken",
                      family = "Knoblauch",
                      role = "cre",
                      email = "ken.knoblauch@inserm.fr"))
as necessary.
Maintainer: ‘Didier G. Leibovici <GeotRYcs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Didier", "G."),
                    family = "Leibovici",
                    role = c("aut", "cre"),
                    email = "doi:10.18637/jss.v034.i10",
                    comment = "2010")
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = c("Alina", "Levine", "&", "Justin"),
                      family = "Bleich",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PTE.Rd’:
    \keyword{medicine,}