checkRd: (-1) PTE_bootstrap_inference.Rd:39-42: Lost braces
    39 |                                                         continuous = function(Xytrain){ #defalt is OLS regression
       |                                                                                       ^
checkRd: (-1) PTE_bootstrap_inference.Rd:43-47: Lost braces
    43 |                                                         incidence = function(Xytrain){ #default is logistic regression
       |                                                                                      ^
checkRd: (-1) PTE_bootstrap_inference.Rd:48-52: Lost braces
    48 |                                                         survival = function(Xytrain){ #default is Weibull regression
       |                                                                                     ^
checkRd: (-1) PTE_bootstrap_inference.Rd:66-68: Lost braces
    66 |                                         function(mod, Xyleftout){
       |                                                                 ^
checkRd: (-1) PTE_bootstrap_inference.Rd:74-77: Lost braces
    74 |                                         function(results, indices_1_1, indices_0_0, indices_0_1, indices_1_0){
       |                                                                                                              ^
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

The Description field contains
  available in Wang et al (2022) <arXiv:2209.08414>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jose M. Maisog <bravas02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "M."),
                      family = "Maisog",
                      role = c("aut", "cre"),
                      email = "bravas02@gmail.com"),
               person(given = "Yuan",
                      family = "Wang",
                      role = "aut"),
               person(given = "George",
                      family = "Luta",
                      role = "aut"),
               person(given = "Jianfei",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter DeWitt <peter.dewitt@cuanschutz.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mirko Signorelli <msignorelli.rpackages@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ron Wehrens <ron.wehrens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ptw-package.Rd:20-28: Lost braces
    20 | @Article{Bloemberg2010,
       |         ^
checkRd: (-1) ptw-package.Rd:30-38: Lost braces
    30 | Article{Wehrens2015,
       |        ^
Found the following HTML validation problems:
QCMetaFilenames.html:99:1 (QCMetaFilenames.Rd:48): Warning: missing </ul> before </div>
checkEnglishLocale.html:48:1 (checkEnglishLocale.Rd:11): Warning: missing </ul> before </div>
print.PTXQC_table.html:51:1 (print.PTXQC_table.Rd:12): Warning: missing </ul> before </div>
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: axis_labs
> ### Title: Apply labels from variables to axis-labels in plots.
> ### Aliases: axis_labs
> 
> ### ** Examples
> 
> data(kfm, package = "ISwR")
> require(sjlabelled, quietly = TRUE)

Attaching package: ‘sjlabelled’

The following object is masked from ‘package:ggplot2’:

    as_label

> kfm <- kfm |>
+   var_labels(
+     dl.milk = "Breast-milk intake (dl/day)",
+     sex = "Sex",
+     weight = "Child weight (kg)",
+     ml.suppl = "Milk substitute (ml/day)",
+     mat.weight = "Maternal weight (kg)",
+     mat.height = "Maternal height (cm)"
+   )
> 
> kfm |>
+   gf_point(weight ~ dl.milk) |>
+   gf_lm(col = 2, interval = "confidence", col = 2) |>
+   axis_labs()
Warning in rep(yes, length.out = len) :
  'x' is NULL so the result will be NULL
Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : 
  replacement has length zero
Calls: axis_labs -> ifelse
Execution halted
Found the following HTML validation problems:
inv_logit.html:46:1 (inv_logit.Rd:10): Warning: missing </ul> before </div>
round_pval.html:46:1 (round_pval.Rd:10): Warning: missing </ul> before </div>
stats_quotes.html:54:1 (stats_quotes.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’

The Description field contains
  <arXiv:1911.12445>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ma.Rd:62: Lost braces
    62 | \item{yi}{Numeric vector of length code{k} with observed effect size
       |                                        ^
checkRd: (-1) ma.Rd:65: Lost braces
    65 | \item{vi}{Numeric vector of length code{k} with sampling variances.}
       |                                        ^
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
checkRd: (-1) plotWordCloud.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{PubMed wordcloud using function 'wordcloud' of package {wordcloud}}
       |                                                               ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                  ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                                           ^
Maintainer: ‘Hyebin Song <hps5320@psu.edu>’

The Description field contains
  <arXiv:1711.08129>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tong",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "hetong007@gmail.com")
as necessary.
Maintainer: ‘Zachary Kurtz <zdkurtz@gmail.com>’

The Description field contains
  Müller, Richard Bonneau, Zachary Kurtz (2016) <arXiv:1605.07072>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.pulsar.html:54:1 (print.pulsar.Rd:15): Warning: missing </ul> before </div>
print.pulsar.refit.html:51:1 (print.pulsar.refit.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  three_utility_probit_helper_functions.cpp:571:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  three_utility_probit_helper_functions.cpp:819:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  three_utility_probit_helper_functions.cpp:1115:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  three_utility_probit_helper_functions.cpp:1163:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  three_utility_probit_helper_functions.cpp:1207:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  three_utility_probit_helper_functions.cpp:1249:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  three_utility_probit_helper_functions.cpp:1518:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pumBayes.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luis", "J."),
                    family = "Villanueva-Rivera",
                    role = c("aut", "cre"),
                    email = "ljvillanueva@coquipr.com")
as necessary.

The Description field contains
  (http://ljvillanueva.github.io/pumilio/).
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
get_pval_tstat.html:57:1 (get_pval_tstat.Rd:16): Warning: missing </ul> before </div>
get_rawpt.html:55:1 (get_rawpt.Rd:14): Warning: missing </ul> before </div>
make_model.html:50:1 (make_model.Rd:12): Warning: missing </ul> before </div>
plot.pumpgridresult.mdes.html:85:1 (plot.pumpgridresult.mdes.Rd:36): Warning: missing </ul> before </div>
plot.pumpgridresult.sample.html:85:1 (plot.pumpgridresult.sample.Rd:36): Warning: missing </ul> before </div>
run_grid.html:76:1 (run_grid.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mean2.html:46:1 (mean2.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘source_pmc.R’ ‘source_pubmed.R’ ‘source_pubtations.R’
Maintainer: ‘Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>’

The BugReports field in DESCRIPTION has
  https://github.com/richelbilderbeek/pureseqtmr/
which should likely be
  https://github.com/richelbilderbeek/pureseqtmr/issues
instead.
Found the following HTML validation problems:
parse_pureseqtm_proteome_text.html:47:1 (parse_pureseqtm_proteome_text.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Philip D. Waggoner <philip.waggoner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "philip.waggoner@gmail.com")
as necessary.
Found the following HTML validation problems:
get-attr.html:54:1 (get-attr.Rd:13): Warning: missing </ul> before </div>
progress_bars.html:117:1 (progress_bars.Rd:56): Warning: missing </ul> before </div>
reduce_right.html:111:1 (reduce_right.Rd:50): Warning: missing </ul> before </div>
update_list.html:66:1 (update_list.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pushbar-buttons.html:48:1 (pushbar-buttons.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
handle_output.html:58:1 (handle_output.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Vygantas Butkus <Vygantas.Butkus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vygantas",
                    family = "Butkus",
                    role = c("aut", "cre"),
                    email = "vygantas.butkus@gmail.com")
as necessary.
checkRd: (-1) DataSets.Rd:10: Lost braces; missing escapes or markup?
    10 | \format{the \code{PvarQuantileDF} is a \code{data.frame} with fields \code{prob} an {Qaunt}. 
       |                                                                                     ^
Maintainer: ‘Ryota Suzuki <suzuki@ef-prime.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ryota",
                      family = "Suzuki",
                      role = c("aut", "cre"),
                      email = "suzuki@ef-prime.com"),
               person(given = "Yoshikazu",
                      family = "Terada",
                      role = "aut",
                      email = "terada@sigmath.es.osaka-u.ac.jp"),
               person(given = "Hidetoshi",
                      family = "Shimodaira",
                      role = "aut",
                      email = "shimo@i.kyoto-u.ac.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘da.Rd’ ‘da_object_oriented_functions.R’
    ‘higher_level_disprop_analysis.R’ ‘lower_level_disprop_analysis.R’
    ‘print.da.Rd’
checkRd: (-1) pvlrt.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
checkRd: (-1) r_contin_table_zip.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
Maintainer: ‘Thiago Santos <thiago.santos@ufvjm.edu.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thiago",
                    family = "Santos",
                    role = c("aut", "cre"),
                    email = "thiago.santos@ufvjm.edu.br")
as necessary.
Maintainer: ‘Tianchen Xu <zjph602xutianchen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianchen",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "zjph602xutianchen@gmail.com",
                    comment = c(ORCID = "0000-0002-0102-7630"))
as necessary.
'library' or 'require' calls not declared from:
  ‘Hmisc’ ‘car’ ‘dplyr’ ‘ggplot2’
Maintainer: ‘Chris Aberson <chris.aberson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Aberson",
                    role = c("aut", "cre"),
                    email = "chris.aberson@gmail.com")
as necessary.
Maintainer: ‘Pengcheng Lu <plu2@kumc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pengcheng",
                      family = "Lu",
                      role = c("aut", "cre"),
                      email = "plu2@kumc.edu"),
               person(given = "Junhao",
                      family = "Liu",
                      role = "aut"),
               person(given = "Devin",
                      family = "Koestler",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pwrFDR.R’
checkRd: (-1) aid_st2.Rd:6: Escaped LaTeX specials: \&
Found the following HTML validation problems:
nested_data.html:68:1 (nested_data.Rd:21): Warning: missing </ul> before </div>
sim_normal.no.nesting.html:67:1 (sim_normal.no.nesting.Rd:21): Warning: missing </ul> before </div>
sim_normal.with.nesting.html:70:1 (sim_normal.with.nesting.Rd:23): Warning: missing </ul> before </div>
sim_poisson.no.nesting.html:67:1 (sim_poisson.no.nesting.Rd:21): Warning: missing </ul> before </div>
sim_tetrads.html:65:1 (sim_tetrads.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt8.0.Rd’:
    http://dx.doi.org/10.15141/S5159X
    http://dx.doi.org/10.1016/j.jdeveco.2012.10.001
  File ‘pwt8.1.Rd’:
    http://dx.doi.org/10.15141/S5NP4S
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt9.0.Rd’:
    https://doi.org/10.15141/S5J01T
  File ‘pwt9.1.Rd’:
    https://doi.org/10.15141/S50T0R
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
add_totals_to_df.html:64:1 (add_totals_to_df.Rd:19): Warning: missing </ul> before </div>
create_dummy_tibbles.html:46:1 (create_dummy_tibbles.Rd:10): Warning: missing </ul> before </div>
extract_section.html:54:1 (extract_section.Rd:14): Warning: missing </ul> before </div>
get_section.html:50:1 (get_section.Rd:12): Warning: missing </ul> before </div>
return_px.html:46:1 (return_px.Rd:10): Warning: missing </ul> before </div>
section_interval.html:50:1 (section_interval.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Tyler Burleigh [aut] (https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
  Authors@R: ‘Tyler Burleigh [aut] (twitter: https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (ORCID: <https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
Maintainer: ‘Minato Nakazawa <minato-nakazawa@umin.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Minato",
                    family = "Nakazawa",
                    role = c("aut", "cre"),
                    email = "minato-nakazawa@umin.net")
as necessary.
Found the following HTML validation problems:
clone.html:46:1 (clone.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) crosstab.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  univariate_plot.Rd: ggplot2, patchwork
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Tomasz",
                      family = "Zadlo",
                      role = "aut"))
as necessary.
checkRd: (-1) srswrRe.Rd:10: Lost braces
    10 |   \item{listRanef}{{\emph{ranef(model)}} object where {\emph{model}} is an { \emph{lmer}} object.}
       |                                                                            ^
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang@wpi.edu")
as necessary.

The Description field contains
  <arXiv:2005.00905>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ayush Agarwal<ayush.agarwal50@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ayush",
                      family = "Agarwal",
                      role = c("aut", "cre"),
                      email = "ayush.agarwal50@gmail.com"),
               person(given = "Dootika",
                      family = "Vats",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘qb_records.R’
Maintainer: ‘Ingo Rohlfing <i.rohlfing@uni-koeln.de>’

The BugReports field in DESCRIPTION has
  https://github.com/ingorohlfing/qcapower
which should likely be
  https://github.com/ingorohlfing/qcapower/issues
instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:260:1 (inst/NEWS.Rd:135): Warning: missing </ul> before </div>
NEWS.html:60:1 (inst/NEWS.Rd:29): Warning: <h4> anchor "CHANGED" already defined
NEWS.html:78:1 (inst/NEWS.Rd:39): Warning: <h4> anchor "CHANGED" already defined
NEWS.html:100:1 (inst/NEWS.Rd:50): Warning: <h4> anchor "FIXED" already defined
NEWS.html:167:1 (inst/NEWS.Rd:88): Warning: <h4> anchor "CHANGED" already defined
NEWS.html:198:1 (inst/NEWS.Rd:104): Warning: <h4> anchor "FIXED" already defined
NEWS.html:238:1 (inst/NEWS.Rd:127): Warning: <h4> anchor "NEW" already defined
Maintainer: ‘Jirka Lewandowski <jirka.lewandowski@wzb.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jirka",
                    family = "Lewandowski",
                    role = c("aut", "cre"),
                    email = "jirka.lewandowski@wzb.eu")
as necessary.
Maintainer: ‘Luca Scrucca <luca.scrucca@unipg.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Leanne", "K."),
                      family = "Kupers",
                      role = "aut"),
               person(given = "Ilja",
                      family = "Nolte",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Ilja", "M."),
                      family = "Nolte",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alireza Lorzadeh <alorzadeh@bcgsc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alireza",
                    family = "Lorzadeh",
                    role = c("aut", "cre"),
                    email = "alorzadeh@bcgsc.ca")
as necessary.
Found the following HTML validation problems:
mqcs.html:58:1 (mqcs.Rd:19): Warning: missing </ul> before </div>
mqcs.add.html:57:1 (mqcs.add.Rd:17): Warning: missing </ul> before </div>
npqcs.html:57:1 (npqcs.Rd:17): Warning: missing </ul> before </div>
npqcs.add.html:57:1 (npqcs.add.Rd:17): Warning: missing </ul> before </div>
plot.fdqcs.depth.html:103:1 (plot.fdqcs.depth.Rd:47): Warning: missing </ul> before </div>
plot.mqcs.html:105:1 (plot.mqcs.Rd:55): Warning: missing </ul> before </div>
plot.npqcs.html:109:1 (plot.npqcs.Rd:57): Warning: missing </ul> before </div>
plot.qcs.html:250:1 (plot.qcs.Rd:188): Warning: missing </ul> before </div>
qcd.html:95:1 (qcd.Rd:43): Warning: missing </ul> before </div>
qcs.add.html:81:1 (qcs.add.Rd:35): Warning: missing </ul> before </div>
Maintainer: ‘Tinniam V Ganesh<tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Xuejun Ma <yinuoyumi@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuejun",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "yinuoyumi@163.com"),
               person(given = "Jingxiao",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Jingke",
                      family = "Zhou",
                      role = "aut"))
as necessary.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tyler",
                    family = "Rinker",
                    role = c("aut", "cre"),
                    email = "tyler.rinker@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.view_data.html:51:1 (print.view_data.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
c.extracted.html:51:1 (c.extracted.Rd:12): Warning: missing </ul> before </div>
print.explain.html:51:1 (print.explain.Rd:12): Warning: missing </ul> before </div>
print.extracted.html:51:1 (print.extracted.Rd:12): Warning: missing </ul> before </div>
print.regexr.html:51:1 (print.regexr.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Deprecated.html:65:1 (Deprecated.Rd:20): Warning: missing </ul> before </div>
print.v_outer.html:55:1 (print.v_outer.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘David Jungreis <dbjungreis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Jungreis",
                      role = c("aut", "cre"),
                      email = "dbjungreis@gmail.com"),
               person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
AIT.more.html:60:1 (AIT.more.Rd:18): Warning: missing </ul> before </div>
AIT.obj.html:58:1 (AIT.obj.Rd:17): Warning: missing </ul> before </div>
CS.more.html:64:1 (CS.more.Rd:20): Warning: missing </ul> before </div>
CS.obj.html:64:1 (CS.obj.Rd:20): Warning: missing </ul> before </div>
KL.more.html:60:1 (KL.more.Rd:18): Warning: missing </ul> before </div>
KL.obj.html:58:1 (KL.obj.Rd:17): Warning: missing </ul> before </div>
MEANmeth.html:51:1 (MEANmeth.Rd:13): Warning: missing </ul> before </div>
QFASA.const.eqn.html:60:1 (QFASA.const.eqn.Rd:18): Warning: missing </ul> before </div>
chisq.CA.html:50:1 (chisq.CA.Rd:12): Warning: missing </ul> before </div>
comp.gen.pseudo.seals.html:71:1 (comp.gen.pseudo.seals.Rd:24): Warning: missing </ul> before </div>
create.d.mat.html:50:1 (create.d.mat.Rd:12): Warning: missing </ul> before </div>
gen.pseudo.seals.html:71:1 (gen.pseudo.seals.Rd:24): Warning: missing </ul> before </div>
mean_geometric.html:46:1 (mean_geometric.Rd:10): Warning: missing </ul> before </div>
testfordiff.ind.boot.html:54:1 (testfordiff.ind.boot.Rd:14): Warning: missing </ul> before </div>
testfordiff.ind.boot.fun.html:58:1 (testfordiff.ind.boot.fun.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
S_fromUL.html:51:1 (S_fromUL.Rd:12): Warning: missing </ul> before </div>
sum_counterdiag.html:53:1 (sum_counterdiag.Rd:13): Warning: missing </ul> before </div>
tr.html:46:1 (tr.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.MellinQF.html:55:1 (print.MellinQF.Rd:14): Warning: missing </ul> before </div>
print.MellinQF_ratio.html:55:1 (print.MellinQF_ratio.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Indranil Ghosh <indranilg49@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Indranil",
                    family = "Ghosh",
                    role = c("aut", "cre"),
                    email = "indranilg49@gmail.com")
as necessary.

The Description field contains
  theoretic models (Flitney and Abbott 2002) <arXiv:quant-ph/0208069>.
  1998) <arXiv:quant-ph/9804010>, Prisoner's Dilemma (J. Orlin Grabbe
  2005) <arXiv:quant-ph/0506219>, Two Person Duel (Flitney and Abbott
  2004) <arXiv:quant-ph/0305058>, Battle of the Sexes (Nawaz and Toor
  2004) <arXiv:quant-ph/0110096>, Hawk and Dove Game (Nawaz and Toor
  2010) <arXiv:quant-ph/0108075>, Newcomb's Paradox (Piotrowski and
  Sladkowski 2002) <arXiv:quant-ph/0202074> and Monty Hall Problem
  (Flitney and Abbott 2002) <arXiv:quant-ph/0109035>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emerson", "Luis", "de", "Santa", "Helena", "Wagner", "Santos", "de", "Lima"),
                      family = "<wagnersantos.ufs@hotmail.com>",
                      role = "aut",
                      email = "wagnersantos.ufs@hotmail.com"),
               person(given = c("Wagner", "Santos"),
                      family = "de Lima",
                      role = "cre",
                      email = "wagnersantos.ufs@hotmail.com"))
as necessary.
Found the following HTML validation problems:
checknames.html:52:1 (checknames.Rd:10): Warning: missing </ul> before </div>
glance.qgcompfit.html:63:1 (glance.qgcompfit.Rd:12): Warning: missing </ul> before </div>
homogeneity_test.html:53:1 (homogeneity_test.Rd:15): Warning: missing </ul> before </div>
tidy.qgcompfit.html:76:1 (tidy.qgcompfit.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
acc.html:54:1 (acc.Rd:14): Warning: missing </ul> before </div>
adjLD.html:83:1 (adjLD.Rd:33): Warning: missing </ul> before </div>
adjLDStat.html:83:1 (adjLDStat.Rd:33): Warning: missing </ul> before </div>
auc.html:50:1 (auc.Rd:12): Warning: missing </ul> before </div>
gblup.html:73:1 (gblup.Rd:27): Warning: missing </ul> before </div>
getGRM.html:73:1 (getGRM.Rd:27): Warning: missing </ul> before </div>
getLDsets.html:54:1 (getLDsets.Rd:14): Warning: missing </ul> before </div>
hwe.html:46:1 (hwe.Rd:10): Warning: missing </ul> before </div>
mergeGRM.html:47:1 (mergeGRM.Rd:10): Warning: missing </ul> before </div>
plotBayes.html:58:1 (plotBayes.Rd:16): Warning: missing </ul> before </div>
plotForest.html:99:1 (plotForest.Rd:42): Warning: missing </ul> before </div>
rnag.html:50:1 (rnag.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘qgis_run_algorithm_p.Rd’
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

The BugReports field in DESCRIPTION has
  https://github.com/SachaEpskamp/qgraph
which should likely be
  https://github.com/SachaEpskamp/qgraph/issues
instead.
Maintainer: ‘ManHsia Yang <ymh@tari.gov.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "ManHsia",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "ymh@tari.gov.tw")
as necessary.
checkRd: (-1) qif.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
qiita_api.html:83:1 (qiita_api.Rd:33): Warning: missing </ul> before </div>
Found the following HTML validation problems:
defunct.html:51:1 (defunct.Rd:17): Warning: missing </ul> before </div>
rpartD.html:168:1 (rpartD.Rd:45): Warning: <h4> anchor "Dichotomize-Single-Predictor" already defined
rpartD.html:185:1 (rpartD.Rd:57): Warning: <h4> anchor "Dichotomize-Multiple-Predictors" already defined
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
tokenize.html:230:1 (tokenize.Rd:113): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
sim.strings.html:102:1 (sim.strings.Rd:52): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Liam Bressler <liam.bressler@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liam",
                    family = "Bressler",
                    role = c("aut", "cre"),
                    email = "liam.bressler@yale.edu")
as necessary.
checkRd: (-1) qmethod-package.Rd:109: Lost braces
   109 |   \item Van Exel, J., and G. de Graaf, 2005. \emph{Q Methodology: A Sneak Preview}\cr \url{https://qmethodblog.files.wordpress.com/2016/01/qmethodologyasneakpreviewreferenceupdate.pdf}{Available at this link}.
       |                                                                                                                                                                                         ^
checkRd: (-1) qmethod-package.Rd:110: Lost braces
   110 |   \item Brown, S. R., 1980. \emph{Political subjectivity: Applications of Q methodology in political science}, New Haven, CT: Yale University Press.\cr \url{https://qmethodblog.files.wordpress.com/2016/01/brown-1980-politicalsubjectivity.pdf}{Available at this link}.
       |                                                                                                                                                                                                                                                   ^
Maintainer: ‘Juan Gea <juangea@geax.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Gea"),
                      family = "Rosat",
                      role = "aut"),
               person(given = c("Ramon", "Martínez", "Coscollà"),
                      family = ".",
                      role = "aut"),
               person(given = "Juan",
                      family = "Gea",
                      role = "cre",
                      email = "juangea@geax.net"))
as necessary.
Maintainer: ‘Wilson Jr. Aala <s98107020@gs.ncku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Wilson", "Jr."),
                    family = "Aala",
                    role = c("aut", "cre"),
                    email = "s98107020@gs.ncku.edu.tw")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
interpol.html:69:1 (interpol.Rd:20): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_qqboxplot.Rd: geom_boxplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Stephen Turner <vustephen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "vustephen@gmail.com")
as necessary.
Maintainer: ‘Wayne Oldford <rwoldford@uwaterloo.ca>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘qqtest.Rd’:
    https://doi.org/10.1080/00031305.2015.1090338
checkRd: (-1) hideLocation.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{trueLoc}{A vector of one or more numbers in the set {1, 2, ..., nSubjects} whose locations are to be hidden.}
       |                                                           ^
checkRd: (-1) hideLocation.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{nSubjects}{An integer larger than 1 used to define the set {1, 2, ..., nSubjects}.}
       |                                                                  ^
Maintainer: ‘Robert Stine  <stine@upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "Stine",
                    role = c("aut", "cre"),
                    email = "stine@upenn.edu")
as necessary.
Found the following HTML validation problems:
matrixInput.html:54:1 (matrixInput.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Xiaoyu Song <xs2148@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaoyu",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "xs2148@cumc.columbia.edu")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘qr_vcard.R’
Found the following HTML validation problems:
add_logo.html:90:1 (add_logo.Rd:41): Warning: missing </ul> before </div>
qr_vcard.html:134:1 (qr_vcard.Rd:68): Warning: missing </ul> before </div>
Maintainer: ‘Karl Gregory <gregorkb@stat.sc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Gregory",
                    role = c("aut", "cre"),
                    email = "gregorkb@stat.sc.edu")
as necessary.
Maintainer: ‘Bob Rudis <bob@rud.is>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Yan Li <bluefatterplaydota@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Li",
                      role = c("aut", "cre", "trl"),
                      email = "bluefatterplaydota@gmail.com"),
               person(given = "Matthew",
                      family = "Sperrin",
                      role = c("aut", "ctb")),
               person(given = "ClinRisk",
                      family = "Ltd.",
                      role = "cph"),
               person(given = c("Tjeerd", "Pieter"),
                      family = "van Staa",
                      role = c("aut", "ths")))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qris.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
qris.extend.html:62:1 (qris.extend.Rd:18): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘all_new_functions.R’
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:111:1 (inst/NEWS.Rd:44): Warning: missing </ul> before </div>
NEWS.html:71:1 (inst/NEWS.Rd:28): Warning: <h4> anchor "New-Features" already defined
NEWS.html:82:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "Bug-Fixes" already defined
NEWS.html:97:1 (inst/NEWS.Rd:40): Warning: <h4> anchor "New-Features" already defined
Maintainer: ‘Maria de los Angeles Resa <maria@stat.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "de", "los", "Angeles"),
                      family = "Resa",
                      role = c("aut", "cre"),
                      email = "maria@stat.columbia.edu"),
               person(given = "Birol",
                      family = "Emir",
                      role = "aut"),
               person(given = "Javier",
                      family = "Cabrera",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:159:1 (inst/NEWS.Rd:73): Warning: missing </ul> before </div>
NEWS.html:43:1 (inst/NEWS.Rd:17): Warning: <h4> anchor "New-Features" already defined
NEWS.html:58:1 (inst/NEWS.Rd:25): Warning: <h4> anchor "New-Features" already defined
NEWS.html:73:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "New-Features" already defined
NEWS.html:89:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "New-Features" already defined
NEWS.html:118:1 (inst/NEWS.Rd:58): Warning: <h4> anchor "New-Features" already defined
NEWS.html:145:1 (inst/NEWS.Rd:69): Warning: <h4> anchor "Bug-Fixes" already defined
'::' or ':::' imports not declared from:
  ‘simsalapar’ ‘stabledist’
Found the following HTML validation problems:
qrnn.initialize.html:68:1 (qrnn.initialize.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
catquo.html:46:1 (catquo.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Kuhn",
                    role = c("aut", "cre"),
                    email = "mxkuhn@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
File ‘qs/libs/qs.so’:
  Found non-API calls to R: ‘CLOENV’, ‘ENCLOS’, ‘FRAME’, ‘HASHTAB’,
    ‘IS_S4_OBJECT’, ‘LEVELS’, ‘OBJECT’, ‘PRENV’, ‘Rf_allocSExp’,
    ‘SETLEVELS’, ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FRAME’,
    ‘SET_HASHTAB’, ‘SET_PRENV’, ‘SET_S4_OBJECT’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
catquo.html:46:1 (catquo.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Found the following HTML validation problems:
cat_remote.html:56:1 (cat_remote.Rd:16): Warning: missing </ul> before </div>
create_ssh_connection.html:47:1 (create_ssh_connection.Rd:11): Warning: missing </ul> before </div>
get_default_qsub_config.html:47:1 (get_default_qsub_config.Rd:10): Warning: missing </ul> before </div>
instantiate_qsub_config.html:48:1 (instantiate_qsub_config.Rd:12): Warning: missing </ul> before </div>
is_job_running.html:46:1 (is_job_running.Rd:10): Warning: missing </ul> before </div>
is_qsub_config.html:46:1 (is_qsub_config.Rd:10): Warning: missing </ul> before </div>
is_remote_local.html:46:1 (is_remote_local.Rd:10): Warning: missing </ul> before </div>
ls_remote.html:56:1 (ls_remote.Rd:16): Warning: missing </ul> before </div>
mkdir_remote.html:57:1 (mkdir_remote.Rd:17): Warning: missing </ul> before </div>
qacct.html:46:1 (qacct.Rd:10): Warning: missing </ul> before </div>
qacct_remote.html:52:1 (qacct_remote.Rd:14): Warning: missing </ul> before </div>
qstat_j.html:46:1 (qstat_j.Rd:10): Warning: missing </ul> before </div>
qstat_j_remote.html:52:1 (qstat_j_remote.Rd:14): Warning: missing </ul> before </div>
qstat_remote.html:52:1 (qstat_remote.Rd:14): Warning: missing </ul> before </div>
qsub_retrieve.html:54:1 (qsub_retrieve.Rd:14): Warning: missing </ul> before </div>
rm_remote.html:64:1 (rm_remote.Rd:20): Warning: missing </ul> before </div>
test_qsub_config.html:46:1 (test_qsub_config.Rd:10): Warning: missing </ul> before </div>
write_remote.html:60:1 (write_remote.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
BoundsObj.html:90:1 (BoundsObj.Rd:40): Warning: missing </ul> before </div>
DR.html:50:1 (DR.Rd:12): Warning: missing </ul> before </div>
QTE.html:207:1 (QTE.Rd:119): Warning: missing </ul> before </div>
QTEparams.html:154:1 (QTEparams.Rd:77): Warning: missing </ul> before </div>
SE.html:84:1 (SE.Rd:34): Warning: missing </ul> before </div>
compute.MDiD.html:93:1 (compute.MDiD.Rd:43): Warning: missing </ul> before </div>
computeDiffSE.html:72:1 (computeDiffSE.Rd:20): Warning: missing </ul> before </div>
getlb.html:62:1 (getlb.Rd:19): Warning: missing </ul> before </div>
getub.html:62:1 (getub.Rd:19): Warning: missing </ul> before </div>
panel.checks.html:47:1 (panel.checks.Rd:10): Warning: missing </ul> before </div>
plot.BoundsObj.html:95:1 (plot.BoundsObj.Rd:40): Warning: missing </ul> before </div>
plot.QTE.html:120:1 (plot.QTE.Rd:55): Warning: missing </ul> before </div>
print.matrix1.html:47:1 (print.matrix1.Rd:10): Warning: missing </ul> before </div>
print.matrix2.html:47:1 (print.matrix2.Rd:10): Warning: missing </ul> before </div>
print.summary.BoundsObj.html:51:1 (print.summary.BoundsObj.Rd:12): Warning: missing </ul> before </div>
print.summary.QTE.html:51:1 (print.summary.QTE.Rd:12): Warning: missing </ul> before </div>
qteToTexreg.html:60:1 (qteToTexreg.Rd:14): Warning: missing </ul> before </div>
summary.QTE.html:51:1 (summary.QTE.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.band.qte.html:51:1 (print.band.qte.Rd:12): Warning: missing </ul> before </div>
print.bw.qte.html:51:1 (print.bw.qte.Rd:12): Warning: missing </ul> before </div>
print.qte.html:51:1 (print.qte.Rd:12): Warning: missing </ul> before </div>
print.summary.qte.html:51:1 (print.summary.qte.Rd:12): Warning: missing </ul> before </div>
print.test.qte.html:51:1 (print.test.qte.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
validate_dir_path.html:46:1 (validate_dir_path.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
calc_invsqrt_mat.html:46:1 (calc_invsqrt_mat.Rd:10): Warning: missing </ul> before </div>
calc_sqrt_mat.html:46:1 (calc_sqrt_mat.Rd:10): Warning: missing </ul> before </div>
process_inputs.html:83:1 (process_inputs.Rd:33): Warning: missing </ul> before </div>
rcpp_log_dmvnorm2.html:58:1 (rcpp_log_dmvnorm2.Rd:16): Warning: missing </ul> before </div>
subset_kinship.html:53:1 (subset_kinship.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
qtlcharts-shiny.html:120:1 (qtlcharts-shiny.Rd:106): Warning: missing </ul> before </div>
Maintainer: ‘Ivan D. Pavicevic <ivanp84@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ivan", "D."),
                    family = "Pavicevic",
                    role = c("aut", "cre"),
                    email = "ivanp84@gmail.com")
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhou",
                      family = "Ya-Hui",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elias", "Chaibub"),
                      family = "Neto",
                      role = "aut",
                      email = "echaibub@hotmail.com"),
               person(given = c("Brian", "S"),
                      family = "Yandell",
                      role = "aut",
                      email = "brian.yandell@wisc.edu"),
               person(given = c("Brian", "S."),
                      family = "Yandell",
                      role = "cre",
                      email = "brian.yandell@wisc.edu"))
as necessary.
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elias", "Chaibub"),
                      family = "Neto",
                      role = "aut",
                      email = "echaibub@hotmail.com"),
               person(given = c("Brian", "S."),
                      family = "yandell",
                      role = c("aut", "cre"),
                      email = "brian.yandell@wisc.edu"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pscdbp.Rd’:
    http://dx.doi.org/10.1371/journal.pgen.0020130
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘bic.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘mcmc.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
    http://dx.doi.org/10.1007/s10994-008-5057-7
  File ‘parents.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
checkRd: (-1) IPWE_mean_IndCen.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:61-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{case}{string. One of {"a", "b", "c"}, corresponding to three models.}
       |                            ^
checkRd: (-1) simJLSDdata.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:32-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
data_provided.html:55:1 (data_provided.Rd:15): Warning: missing </ul> before </div>
result_read_fb_mobility_data.html:69:1 (result_read_fb_mobility_data.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Siva Rajesh Kasa <sivarajesh.kasa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Kasa",
                      role = "aut"),
               person(given = c("Siva", "Rajesh"),
                      family = "Kasa",
                      role = "cre",
                      email = "sivarajesh.kasa@gmail.com"))
as necessary.
Maintainer: ‘Berwin A. Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Berwin", "A.", "Turlach", "R", "port", "by", "Andreas", "Weingessel", "<Andreas.Weingessel@ci.tuwien.ac.at>", "Fortran", "contributions", "from", "Cleve", "Moler"),
                      family = "dpodi/LINPACK)",
                      role = "aut",
                      email = "Andreas.Weingessel@ci.tuwien.ac.at",
                      comment = "a modified version of"),
               person(given = c("Berwin", "A."),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
checkRd: (-1) find_lcp.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:18-19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:23-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) als_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:13: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
check_existing_download.html:54:1 (check_existing_download.Rd:14): Warning: missing </ul> before </div>
check_for_warnings.html:46:1 (check_for_warnings.Rd:10): Warning: missing </ul> before </div>
construct_header.html:47:1 (construct_header.Rd:11): Warning: missing </ul> before </div>
export_responses_filedownload.html:56:1 (export_responses_filedownload.Rd:15): Warning: missing </ul> before </div>
export_responses_request.html:60:1 (export_responses_request.Rd:17): Warning: missing </ul> before </div>
infer_data_types.html:54:1 (infer_data_types.Rd:14): Warning: missing </ul> before </div>
qualtrics_response_codes.html:46:1 (qualtrics_response_codes.Rd:10): Warning: missing </ul> before </div>
wrapper_mc.html:50:1 (wrapper_mc.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.coefficients_textmodel.html:56:1 (print.coefficients_textmodel.Rd:15): Warning: missing </ul> before </div>
print.statistics_textmodel.html:56:1 (print.statistics_textmodel.Rd:15): Warning: missing </ul> before </div>
print.summary.textmodel.html:56:1 (print.summary.textmodel.Rd:15): Warning: missing </ul> before </div>
print.textmodel_wordfish.html:51:1 (print.textmodel_wordfish.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.network.html:50:1 (as.network.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_dots.html:50:1 (check_dots.Rd:12): Warning: missing </ul> before </div>
compute_mattr.html:54:1 (compute_mattr.Rd:13): Warning: missing </ul> before </div>
compute_msttr.html:51:1 (compute_msttr.Rd:13): Warning: missing </ul> before </div>
dfm_split_hyphenated_features.html:48:1 (dfm_split_hyphenated_features.Rd:10): Warning: missing </ul> before </div>
get_docvars.html:62:1 (get_docvars.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Joachim Zuckarelli <joachim@zuckarelli.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joachim",
                    family = "Zuckarelli",
                    role = c("aut", "cre"),
                    email = "joachim@zuckarelli.de")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Cinzia Viroli <cinzia.viroli@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Berrettini",
                      role = "aut"),
               person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = c("aut", "cre"),
                      email = "cinzia.viroli@unibo.it"))
as necessary.
Maintainer: ‘Zoe Ashwood <zashwood@law.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zoe",
                      family = "Ashwood",
                      role = c("aut", "cre"),
                      email = "zashwood@law.stanford.edu"),
               person(given = "Becky",
                      family = "Elias",
                      role = "aut",
                      email = "Becky.Elias@kingcounty.gov"),
               person(given = c("Daniel", "E."),
                      family = "Ho",
                      role = "aut",
                      email = "dho@law.stanford.edu"))
as necessary.
Found the following calls to attach():
File ‘quantmod/R/attachSymbols.R’:
  attach(NULL, pos = pos, name = DB$name)
  attach(NULL, pos = pos, name = DB$name)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Teng Fei <tfei@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Teng",
                      family = "Fei",
                      role = c("aut", "cre"),
                      email = "tfei@emory.edu"),
               person(given = "Tianwei",
                      family = "Yu",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
quant_est.html:75:1 (quant_est.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lipsitz",
                      role = "aut"),
               person(given = "Alexandre",
                      family = "Belloni",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"))
as necessary.
Found the following HTML validation problems:
plot-LagOperator.html:89:1 (plot-LagOperator.Rd:39): Warning: missing </ul> before </div>
quantspec-defunct.html:144:1 (quantspec-defunct.Rd:78): Warning: missing </ul> before </div>
Maintainer: ‘Salonik Resch <resc0059@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Salonik",
                    family = "Resch",
                    role = c("aut", "cre"),
                    email = "resc0059@umn.edu")
as necessary.

The Description field contains
  <arXiv:1411.4028>, and a variational quantum classifier (Schuld 2018)
  <arXiv:1804.00633>. Can be used with the gridsynth algorithm
  <arXiv:1212.6253> to perform decomposition into the Clifford+T set.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) quarries.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:20-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:23-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:26-28: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
dot-NormalizeStatus.html:58:1 (dot-NormalizeStatus.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
quarto_serve.html:73:1 (quarto_serve.Rd:27): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘quax.Rd’
Maintainer: ‘Laura Anderlucci <laura.anderlucci@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = "aut"),
               person(given = "Laura",
                      family = "Anderlucci",
                      role = c("aut", "cre"),
                      email = "laura.anderlucci@unibo.it"))
as necessary.
Found the following HTML validation problems:
prefix_operators_name.html:46:1 (prefix_operators_name.Rd:10): Warning: missing </ul> before </div>
queryBuilderConfigClass.html:290:1 (queryBuilderConfigClass.Rd:159): Warning: missing </ul> before </div>
queryBuilderConfigClass.html:129:1 (queryBuilderConfigClass.Rd:64): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:135:1 (queryBuilderConfigClass.Rd:68): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:160:1 (queryBuilderConfigClass.Rd:83): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:166:1 (queryBuilderConfigClass.Rd:87): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:191:1 (queryBuilderConfigClass.Rd:102): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:197:1 (queryBuilderConfigClass.Rd:106): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:220:1 (queryBuilderConfigClass.Rd:119): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:226:1 (queryBuilderConfigClass.Rd:123): Warning: <h5> anchor "Arguments" already defined
queryBuilderConfigClass.html:251:1 (queryBuilderConfigClass.Rd:138): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:267:1 (queryBuilderConfigClass.Rd:148): Warning: <h5> anchor "Usage" already defined
queryBuilderConfigClass.html:273:1 (queryBuilderConfigClass.Rd:152): Warning: <h5> anchor "Arguments" already defined
substitute_q.html:50:1 (substitute_q.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
escape_regex.html:48:1 (escape_regex.Rd:11): Warning: missing </ul> before </div>
first_non_null.html:50:1 (first_non_null.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
summary.queue_list.html:51:1 (summary.queue_list.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Pedro Canadilla <pedro.canadilla@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pedro",
                    family = "Canadilla",
                    role = c("aut", "cre"),
                    email = "pedro.canadilla@gmail.com")
as necessary.
Found the following HTML validation problems:
hasBbox.html:58:1 (hasBbox.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Linares Daniel <danilinares@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
aic.html:46:1 (aic.Rd:10): Warning: missing </ul> before </div>
avbootstrap.html:56:1 (avbootstrap.Rd:16): Warning: missing </ul> before </div>
logliks.html:48:1 (logliks.Rd:11): Warning: missing </ul> before </div>
parbootstrap.html:46:1 (parbootstrap.Rd:10): Warning: missing </ul> before </div>
sse.html:46:1 (sse.Rd:10): Warning: missing </ul> before </div>
summary.quickpsy.html:53:1 (summary.quickpsy.Rd:13): Warning: missing </ul> before </div>
thresholds.html:55:1 (thresholds.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) display_table.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{normtest}{A character indicating test of normality, the default method is \code{\link{shapiro.test}} when sample size no more than 5000, otherwise \code{\link[nortest]{lillie.test}} {Kolmogorov-Smirnov} is used, see package \strong{nortest} for more methods.Use 'shapiro.test', 'lillie.test', 'ad.test', etc to specify methods.}
       |                                                                                                                                                                                             ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘quickReg.Rmd’ using rmarkdown

Quitting from quickReg.Rmd:130-162 [plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    ▆
 1. └─ggplot2::labs(list(title = "Regression Model", x = "variables"))
 2.   └─ggplot2::class_labels(args)
 3.     └─S7::new_object(labels)
 4.       └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'quickReg.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘quickReg.Rmd’

SUMMARY: processing the following file failed:
  ‘quickReg.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘A. Luise Kuehn <luise.kuehn@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "Luise"),
                    family = "Kuehn",
                    role = c("aut", "cre"),
                    email = "luise.kuehn@uni-greifswald.de")
as necessary.
Found the following HTML validation problems:
first_non_na.html:46:1 (first_non_na.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
augment.html:51:1 (augment.Rd:12): Warning: missing </ul> before </div>
glance.html:50:1 (glance.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Radford Neal <radfordneal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Radford",
                    family = "Neal",
                    role = c("aut", "cre"),
                    email = "radfordneal@gmail.com")
as necessary.
File ‘quotedargs/libs/quotedargs.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘LEVELS’, ‘PRCODE’, ‘PRENV’,
    ‘PRVALUE’, ‘Rf_allocSExp’, ‘SETLEVELS’, ‘SET_NAMED’, ‘SET_PRCODE’,
    ‘SET_PRENV’, ‘SET_PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Found the following HTML validation problems:
mse.InteractionClassification.html:54:1 (mse.InteractionClassification.Rd:13): Warning: missing </ul> before </div>
mse.payoffs.html:52:1 (mse.payoffs.Rd:12): Warning: missing </ul> before </div>
summary.InteractionClassification.html:54:1 (summary.InteractionClassification.Rd:13): Warning: missing </ul> before </div>
summary.payoffs.html:51:1 (summary.payoffs.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Vitor Marques <vmrodriguespro@gmail.com>’

The Description field contains
  <arXiv:quant-ph/9706062v2>; C. Godsil (2011) <arXiv:1103.2578v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
check_comments.html:50:1 (check_comments.Rd:12): Warning: missing </ul> before </div>
deprecated.html:72:1 (deprecated.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Obadia <thomas.obadia@pasteur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pierre-Yves",
                      family = "Boelle",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Obadia",
                      role = c("aut", "cre"),
                      email = "thomas.obadia@pasteur.fr"))
as necessary.
checkRd: (-1) est.R0.ML.Rd:98: Lost braces
    98 | Supplementary Material S1 from \doi{10.1186/1472-6947-12-147}{Obadia et al., 2012}.
       |                                                              ^
checkRd: (-1) plot.R0.R.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from one estimation method.
       |                                                      ^
checkRd: (-1) plot.R0.sR.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from an
       |                                                      ^
Maintainer: ‘Denise Rava <drava@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denise",
                    family = "Rava",
                    role = c("aut", "cre"),
                    email = "drava@ucsd.edu")
as necessary.

The Description field contains
  selection process. Rava, D. and Xu, R. (2020) <arXiv:2003.09460>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) do_admb.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_pars.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Andrea Fasulo <fasulo@istat.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrea", "Fasulo,Giulio", "Barcaroli,Stefano", "Falorsi,Alessio", "Guandalini,Daniela", "Pagliuca,Marco", "Dionisio"),
                      family = "Terribili",
                      role = "aut"),
               person(given = "Andrea",
                      family = "Fasulo",
                      role = "cre",
                      email = "fasulo@istat.it"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2country
which should likely be
  https://github.com/oobianom/r2country/issues
instead.
Found the following HTML validation problems:
d3-shiny.html:68:1 (d3-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Robin Van Oirbeek <robin.vanoirbeek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Van Oirbeek",
                    role = c("aut", "cre"),
                    email = "robin.vanoirbeek@gmail.com")
as necessary.
Found the following HTML validation problems:
print.R2.html:51:1 (print.R2.Rd:12): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  runMLwiN.Rd: mcmc.list
  sixway.Rd: mcmc, mcmc.list
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
extract-methods-igls.html:68:1 (extract-methods-igls.Rd:25): Warning: missing </ul> before </div>
extract-methods-mcmc.html:68:1 (extract-methods-mcmc.Rd:25): Warning: missing </ul> before </div>
formula.mlwinfitIGLS.html:55:1 (formula.mlwinfitIGLS.Rd:14): Warning: missing </ul> before </div>
formula.mlwinfitMCMC.html:55:1 (formula.mlwinfitMCMC.Rd:14): Warning: missing </ul> before </div>
summary.mlwinfitIGLS.html:51:1 (summary.mlwinfitIGLS.Rd:12): Warning: missing </ul> before </div>
summary.mlwinfitMCMC.html:51:1 (summary.mlwinfitMCMC.Rd:12): Warning: missing </ul> before </div>
Found the following calls to attach():
File ‘R2OpenBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
as.fmap.html:46:1 (as.fmap.Rd:10): Warning: missing </ul> before </div>
decorate.html:50:1 (decorate.Rd:12): Warning: missing </ul> before </div>
decorate.WrappedModel.html:57:1 (decorate.WrappedModel.Rd:15): Warning: missing </ul> before </div>
decorate.default.html:59:1 (decorate.default.Rd:16): Warning: missing </ul> before </div>
decorate.earth.html:55:1 (decorate.earth.Rd:14): Warning: missing </ul> before </div>
decorate.elm.html:55:1 (decorate.elm.Rd:14): Warning: missing </ul> before </div>
decorate.randomForest.html:55:1 (decorate.randomForest.Rd:14): Warning: missing </ul> before </div>
decorate.svm.formula.html:55:1 (decorate.svm.formula.Rd:14): Warning: missing </ul> before </div>
decorate.train.html:51:1 (decorate.train.Rd:12): Warning: missing </ul> before </div>
verify.html:54:1 (verify.Rd:14): Warning: missing </ul> before </div>
verify.default.html:55:1 (verify.default.Rd:14): Warning: missing </ul> before </div>
verify.train.html:63:1 (verify.train.Rd:18): Warning: missing </ul> before </div>
verify.xgb.Booster.html:79:1 (verify.xgb.Booster.Rd:30): Warning: missing </ul> before </div>
write.fmap.html:50:1 (write.fmap.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rtf_page_footer.html:136:1 (rtf_page_footer.Rd:72): Warning: missing </ul> before </div>
rtf_page_header.html:136:1 (rtf_page_header.Rd:72): Warning: missing </ul> before </div>
Found the following HTML validation problems:
power_studies_results.html:47:1 (power_studies_results.Rd:11): Warning: missing </ul> before </div>
pvaluecdf.html:47:1 (pvaluecdf.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2shortcode
which should likely be
  https://github.com/oobianom/r2shortcode/issues
instead.
Found the following calls to attach():
File ‘R2WinBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
dot-m_multi_spec.html:52:1 (dot-m_multi_spec.Rd:13): Warning: missing </ul> before </div>
m_stop_animate.html:47:1 (m_stop_animate.Rd:11): Warning: missing </ul> before </div>
m_viewer_spec.html:98:1 (m_viewer_spec.Rd:43): Warning: missing </ul> before </div>
r3dmol-shiny.html:68:1 (r3dmol-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Sam Wilks <sw463@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sam",
                    family = "Wilks",
                    role = c("aut", "cre"),
                    email = "sw463@cam.ac.uk")
as necessary.
Maintainer: ‘Thomas Bock <thsteinbock@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Bock",
                    role = c("aut", "cre"),
                    email = "thsteinbock@web.de")
as necessary.
Found the following HTML validation problems:
makevec_prop.html:50:1 (makevec_prop.Rd:12): Warning: missing </ul> before </div>
rot_vector.html:46:1 (rot_vector.Rd:10): Warning: missing </ul> before </div>
show_lineup.html:46:1 (show_lineup.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ian G. Taylor <Ian.Taylor@noaa.gov>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) r4ss-package.Rd:9: Lost braces; missing escapes or markup?
     9 | A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.19.01, from April 2022).
       |                                                                                                                                                                                                                                                                                                                                                                                                ^
Found the following HTML validation problems:
add_legend.html:104:1 (add_legend.Rd:48): Warning: missing </ul> before </div>
get_tuning_table.html:74:1 (get_tuning_table.Rd:28): Warning: missing </ul> before </div>
get_tv_parlabs.html:51:1 (get_tv_parlabs.Rd:13): Warning: missing </ul> before </div>
is.wholenumber.html:52:1 (is.wholenumber.Rd:13): Warning: missing </ul> before </div>
sspar.html:69:1 (sspar.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
expand_od_pairs.html:55:1 (expand_od_pairs.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) extract_class.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) extract_class.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) extract_class.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
Repository.html:83:1 (Repository.Rd:117): Warning: <h5> anchor "Usage" already defined
Repository.html:116:1 (Repository.Rd:138): Warning: <h5> anchor "Usage" already defined
Repository.html:122:1 (Repository.Rd:142): Warning: <h5> anchor "Arguments" already defined
Repository.html:145:1 (Repository.Rd:155): Warning: <h5> anchor "Usage" already defined
Repository.html:151:1 (Repository.Rd:159): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
as.list.R6.html:52:1 (as.list.R6.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) post_RA_fits.Rd:61: Lost braces; missing escapes or markup?
    61 |     \item{\code{H(po_{bm_{n.bm}}, po_act)}:}{ last benchmark prior bm_{n.bm} inducing the fit \code{fits.bm[[n.bm]]} and actual prior}
       |                                                                       ^
Maintainer: ‘Andrew Taylor Burchill <andrew.burchill@asu.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘brute_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘codes_to_colors.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘exampleGUI.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘how_many.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘how_robust.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘rabi.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘rs_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘simple_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘tweaked_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ao_get_leaners_progress_by_course.R’
Found the following HTML validation problems:
plotPC.html:50:1 (plotPC.Rd:12): Warning: missing </ul> before </div>
plotPP.html:62:1 (plotPP.Rd:18): Warning: missing </ul> before </div>
plotUMINoise.html:54:1 (plotUMINoise.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Bass_ind_skeleton.html:46:1 (Bass_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Bass_pop_skeleton.html:46:1 (Bass_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Bass_spatial_skeleton.html:46:1 (Bass_spatial_skeleton.Rd:10): Warning: missing </ul> before </div>
Bream_ind_skeleton.html:46:1 (Bream_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Bream_pop_skeleton.html:46:1 (Bream_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Bream_spatial_skeleton.html:46:1 (Bream_spatial_skeleton.Rd:10): Warning: missing </ul> before </div>
ClamF_ind_skeleton.html:46:1 (ClamF_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
ClamF_pop_skeleton.html:46:1 (ClamF_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Clam_ind_skeleton.html:46:1 (Clam_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Clam_pop_skeleton.html:46:1 (Clam_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Mussel_ind_skeleton.html:46:1 (Mussel_ind_skeleton.Rd:10): Warning: missing </ul> before </div>
Mussel_pop_skeleton.html:46:1 (Mussel_pop_skeleton.Rd:10): Warning: missing </ul> before </div>
Mussel_spatial_skeleton.html:46:1 (Mussel_spatial_skeleton.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
chartJSRadarOutput.html:54:1 (chartJSRadarOutput.Rd:14): Warning: missing </ul> before </div>
chartJSRadar_html.html:66:1 (chartJSRadar_html.Rd:20): Warning: missing </ul> before </div>
renderChartJSRadar.html:54:1 (renderChartJSRadar.Rd:14): Warning: missing </ul> before </div>
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘José Matute <jmatuteflores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.rcorr.html:51:1 (print.rcorr.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_character.html:46:1 (as_character.Rd:10): Warning: missing </ul> before </div>
as_duration.html:46:1 (as_duration.Rd:10): Warning: missing </ul> before </div>
as_factor.html:50:1 (as_factor.Rd:12): Warning: missing </ul> before </div>
copy_attr.html:54:1 (copy_attr.Rd:14): Warning: missing </ul> before </div>
deregister.html:63:1 (deregister.Rd:21): Warning: missing </ul> before </div>
fix_smart.html:50:1 (fix_smart.Rd:12): Warning: missing </ul> before </div>
indexr.html:66:1 (indexr.Rd:20): Warning: missing </ul> before </div>
render.html:50:1 (render.Rd:12): Warning: missing </ul> before </div>
render.datatables.html:55:1 (render.datatables.Rd:14): Warning: missing </ul> before </div>
render.plotly.html:55:1 (render.plotly.Rd:14): Warning: missing </ul> before </div>
store.html:54:1 (store.Rd:14): Warning: missing </ul> before </div>
write_parquet.html:54:1 (write_parquet.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pdp_plot.html:90:1 (pdp_plot.Rd:38): Warning: missing </ul> before </div>
print.crtree.predict.html:55:1 (print.crtree.predict.Rd:14): Warning: missing </ul> before </div>
print.gbt.predict.html:55:1 (print.gbt.predict.Rd:14): Warning: missing </ul> before </div>
print.logistic.predict.html:55:1 (print.logistic.predict.Rd:14): Warning: missing </ul> before </div>
print.mnl.predict.html:55:1 (print.mnl.predict.Rd:14): Warning: missing </ul> before </div>
print.nb.predict.html:55:1 (print.nb.predict.Rd:14): Warning: missing </ul> before </div>
print.nn.predict.html:55:1 (print.nn.predict.Rd:14): Warning: missing </ul> before </div>
print.regress.predict.html:55:1 (print.regress.predict.Rd:14): Warning: missing </ul> before </div>
print.rforest.predict.html:55:1 (print.rforest.predict.Rd:14): Warning: missing </ul> before </div>
print_predict_model.html:58:1 (print_predict_model.Rd:16): Warning: missing </ul> before </div>
render.DiagrammeR.html:55:1 (render.DiagrammeR.Rd:14): Warning: missing </ul> before </div>
varimp.html:62:1 (varimp.Rd:18): Warning: missing </ul> before </div>
varimp_plot.html:62:1 (varimp_plot.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.conjoint.predict.html:55:1 (print.conjoint.predict.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Doug Nychka <nychka@mines.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Doug",
                      family = "Nychka",
                      role = c("aut", "cre"),
                      email = "nychka@mines.edu"),
               person(given = "Eric",
                      family = "Gilleland",
                      role = "aut"),
               person(given = "Liangying",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Tim",
                      family = "Hoar",
                      role = "aut"),
               person(given = "Kate",
                      family = "Young",
                      role = "aut"))
as necessary.
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "david.morina@uab.cat",
                      comment = "Barcelona Graduate School of Mathematics"),
               person(given = "Manuel",
                      family = "Higueras",
                      role = "aut",
                      comment = "Basque Center for Applied Mathematics"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut",
                      comment = "Universitat Autònoma de Barcelona"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Mark Hogue <mark.hogue.chp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Hogue",
                    role = c("aut", "cre"),
                    email = "mark.hogue.chp@gmail.com")
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johannes",
                      family = "Burkhardt",
                      role = c("aut", "cre"),
                      email = "johannes.burkhardt@gmail.com"),
               person(given = "Matthias",
                      family = "Bannert",
                      role = "aut",
                      email = "matthias.bannert@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_element.Rd’
Found the following HTML validation problems:
popsd.html:53:1 (popsd.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
agg_supertransparent.html:117:1 (agg_supertransparent.Rd:55): Warning: missing </ul> before </div>
Found the following HTML validation problems:
RagGrid-shiny.html:68:1 (RagGrid-shiny.Rd:25): Warning: missing </ul> before </div>
depPath.html:46:1 (depPath.Rd:10): Warning: missing </ul> before </div>
formatColumns.html:55:1 (formatColumns.Rd:15): Warning: missing </ul> before </div>
getDeps.html:50:1 (getDeps.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
embed_databricks.html:84:1 (embed_databricks.Rd:32): Warning: missing </ul> before </div>
ragnar_chunks_view.html:48:1 (ragnar_chunks_view.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.blank.html:50:1 (is.blank.Rd:12): Warning: missing </ul> before </div>
price_with_intensity_link.html:118:1 (price_with_intensity_link.Rd:55): Warning: missing </ul> before </div>
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dione", "Pereira"),
                      family = "Cardoso",
                      role = c("aut", "cre"),
                      email = "cardoso.dione@gmail.com"),
               person(given = c("Edilson", "Marcelino"),
                      family = "Silva",
                      role = "aut"),
               person(given = c("Paulo", "Cesar"),
                      family = "Ossani",
                      role = "aut"),
               person(given = c("Marx", "Leandro", "Naves"),
                      family = "Silva",
                      role = "ctb"),
               person(given = c("Joel", "Augusto"),
                      family = "Muniz",
                      role = "ctb"),
               person(given = c("Daniel", "Furtado"),
                      family = "Ferreira",
                      role = "ctb"),
               person(given = c("Junior", "Cesar"),
                      family = "Avanzi",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
  File ‘RainFallExample.Rd’:
    \keyword{
          Erosivity index; R-Factor; Universal [TRUNCATED]
  File ‘RainfallErosivityFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
Maintainer: ‘Jost von Hardenberg <j.vonhardenberg@isac.cnr.it>’

The BugReports field in DESCRIPTION has
  https://github.com/jhardenberg/rainfarmr
which should likely be
  https://github.com/jhardenberg/rainfarmr/issues
instead.
Maintainer: ‘Kory D. Johnson <korydjohnson@gmail.com>’

The Description field contains
  <arXiv:1510.06322>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Erica Ponzi <erica.ponzi@medisin.uio.no>’

The Description field contains
  <arXiv:2101.09110>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
data_heatmap.html:62:1 (data_heatmap.Rd:18): Warning: missing </ul> before </div>
get_final_decomposition_robustH.html:58:1 (get_final_decomposition_robustH.Rd:16): Warning: missing </ul> before </div>
get_individual_decomposition_robustH.html:63:1 (get_individual_decomposition_robustH.Rd:21): Warning: missing </ul> before </div>
get_joint_decomposition_robustH.html:54:1 (get_joint_decomposition_robustH.Rd:14): Warning: missing </ul> before </div>
get_joint_scores_robustH.html:78:1 (get_joint_scores_robustH.Rd:30): Warning: missing </ul> before </div>
get_sv_threshold.html:50:1 (get_sv_threshold.Rd:12): Warning: missing </ul> before </div>
get_wedin_bound_samples.html:58:1 (get_wedin_bound_samples.Rd:16): Warning: missing </ul> before </div>
sim_dist.html:54:1 (sim_dist.Rd:14): Warning: missing </ul> before </div>
wedin_bound_resampling.html:58:1 (wedin_bound_resampling.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Phil Mike Jones <philmikejones@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Found the following HTML validation problems:
Rtimer.html:107:1 (Rtimer.Rd:63): Warning: <h5> anchor "Usage" already defined
Rtimer.html:126:1 (Rtimer.Rd:74): Warning: <h5> anchor "Returns" already defined
Rtimer.html:143:1 (Rtimer.Rd:83): Warning: <h5> anchor "Usage" already defined
Rtimer.html:149:1 (Rtimer.Rd:87): Warning: <h5> anchor "Arguments" already defined
Rtimer.html:162:1 (Rtimer.Rd:94): Warning: <h5> anchor "Returns" already defined
Rtimer.html:179:1 (Rtimer.Rd:103): Warning: <h5> anchor "Usage" already defined
Rtimer.html:185:1 (Rtimer.Rd:107): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Veronica Nava <veronicanava245@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Veronica",
                      family = "Nava",
                      role = c("aut", "cre"),
                      email = "veronicanava245@gmail.com"),
               person(given = c("Maria", "Luce"),
                      family = "Frezzotti",
                      role = "ctb"),
               person(given = "Barbara",
                      family = "Leoni",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘RamanMP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: peak.finder
> ### Title: Peaks identification
> ### Aliases: peak.finder
> ### Keywords: peaks
> 
> ### ** Examples
> 
> data("MPdatabase")
> peak.data<-peak.finder(MPdatabase[,c(1,7)], threshold = 500, m=7)
Error: <ggplot2::element_text> object properties are invalid:
- @size must be <NULL>, <integer>, or <double>, not <character>
Execution halted
Maintainer: ‘Chapman Siu <chpmn.siu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chapman",
                    family = "Siu",
                    role = c("aut", "cre"),
                    email = "chpmn.siu@gmail.com")
as necessary.
Found the following HTML validation problems:
Unlist.html:48:1 (Unlist.Rd:11): Warning: missing </ul> before </div>
satisfy.html:46:1 (satisfy.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
amAxisBreaks.html:69:1 (amAxisBreaks.Rd:27): Warning: missing </ul> before </div>
updateAmPieChart.html:57:1 (updateAmPieChart.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
amChartsOutput.html:58:1 (amChartsOutput.Rd:16): Warning: missing </ul> before </div>
getCurrentStockData.html:123:1 (getCurrentStockData.Rd:60): Warning: missing </ul> before </div>
renderAmCharts.html:55:1 (renderAmCharts.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Xinwei Ma <x1ma@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matias", "D."),
                      family = "Cattaneo",
                      role = "aut"),
               person(given = "Paul",
                      family = "Cheung",
                      role = "aut"),
               person(given = "Xinwei",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "x1ma@ucsd.edu"),
               person(given = "Yusufcan",
                      family = "Masatlioglu",
                      role = "aut"),
               person(given = "Elchin",
                      family = "Suleymanov",
                      role = "aut"))
as necessary.

The Description field contains
  Cattaneo, Ma, Masatlioglu and Suleymanov (2020) <arXiv:1712.03448> and
  Cattaneo, Cheung, Ma, and Masatlioglu (2022) <arXiv:2110.10650>, which
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.ramchoiceRevealAtte.html:47:1 (print.ramchoiceRevealAtte.Rd:10): Warning: missing </ul> before </div>
print.ramchoiceRevealPref.html:47:1 (print.ramchoiceRevealPref.Rd:10): Warning: missing </ul> before </div>
print.ramchoiceRevealPrefModel.html:47:1 (print.ramchoiceRevealPrefModel.Rd:10): Warning: missing </ul> before </div>
summary.ramchoiceRevealAtte.html:47:1 (summary.ramchoiceRevealAtte.Rd:10): Warning: missing </ul> before </div>
summary.ramchoiceRevealPref.html:47:1 (summary.ramchoiceRevealPref.Rd:10): Warning: missing </ul> before </div>
summary.ramchoiceRevealPrefModel.html:47:1 (summary.ramchoiceRevealPrefModel.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Zhiyong Zhang <zzhang4@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zzhang4@nd.edu"),
               person(given = "Jack",
                      family = "McArdle",
                      role = "aut"),
               person(given = "Aki",
                      family = "Hamagami",
                      role = "aut"),
               person(given = c("&", "Kevin"),
                      family = "Grimm",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ramEffectSE.html:60:1 (ramEffectSE.Rd:21): Warning: missing </ul> before </div>
ramFlip.html:49:1 (ramFlip.Rd:16): Warning: missing </ul> before </div>
ramIndex.html:48:1 (ramIndex.Rd:15): Warning: missing </ul> before </div>
ramMatrix.html:47:1 (ramMatrix.Rd:14): Warning: missing </ul> before </div>
ramParseLavaan.html:61:1 (ramParseLavaan.Rd:22): Warning: missing </ul> before </div>
ramPathBridge.html:61:1 (ramPathBridge.Rd:22): Warning: missing </ul> before </div>
ramRmOne.html:49:1 (ramRmOne.Rd:16): Warning: missing </ul> before </div>
ramUniquePath.html:49:1 (ramUniquePath.Rd:16): Warning: missing </ul> before </div>
summary.RAMpath.html:78:1 (summary.RAMpath.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Zach Branson <zach@stat.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zach",
                    family = "Branson",
                    role = c("aut", "cre"),
                    email = "zach@stat.cmu.edu")
as necessary.

The Description field contains
  variable. See Branson (2021) <arXiv:1804.08760> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

The Description field contains
  <arXiv:1809.05212>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘randcorr-package.Rd’:
    \keyword{matrix,}
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Grace",
                      family = "Deng",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu"))
as necessary.
Found the following HTML validation problems:
argument_convention.html:100:1 (argument_convention.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Ron Ammar <ron.ammar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Ammar",
                    role = c("aut", "cre"),
                    email = "ron.ammar@gmail.com")
as necessary.
Maintainer: ‘Peter Langfelder <peter.langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lin",
                      family = "Song",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Maintainer: ‘Joseph J. Lee <joseph.j.lee@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "J."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "joseph.j.lee@post.harvard.edu"),
               person(given = "Tirthankar",
                      family = "Dasgupta",
                      role = "aut"))
as necessary.
Maintainer: ‘D. Labes <detlewlabes@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "D.",
                    family = "Labes",
                    role = c("aut", "cre"),
                    email = "detlewlabes@gmx.de")
as necessary.
checkRd: (-1) makeDesignMatrix.Rd:16: Lost braces; missing escapes or markup?
    16 | is randomized to a certain treatment {j}, the entry of \code{(i,j)} of the
       |                                      ^
Found the following HTML validation problems:
TV.html:46:1 (TV.Rd:10): Warning: missing </ul> before </div>
cash-assessment-method.html:51:1 (cash-assessment-method.Rd:12): Warning: missing </ul> before </div>
cash-comparison-method.html:51:1 (cash-comparison-method.Rd:12): Warning: missing </ul> before </div>
cash-derFunc-method.html:51:1 (cash-derFunc-method.Rd:12): Warning: missing </ul> before </div>
cash-desFunc-method.html:51:1 (cash-desFunc-method.Rd:12): Warning: missing </ul> before </div>
cash-desScores-method.html:51:1 (cash-desScores-method.Rd:12): Warning: missing </ul> before </div>
cash-endpoint-method.html:51:1 (cash-endpoint-method.Rd:12): Warning: missing </ul> before </div>
cash-evaluation-method.html:51:1 (cash-evaluation-method.Rd:12): Warning: missing </ul> before </div>
cash-issue-method.html:51:1 (cash-issue-method.Rd:12): Warning: missing </ul> before </div>
cash-probUnDesirable-method.html:51:1 (cash-probUnDesirable-method.Rd:12): Warning: missing </ul> before </div>
cash-randPar-method.html:51:1 (cash-randPar-method.Rd:12): Warning: missing </ul> before </div>
cash-randSeq-method.html:51:1 (cash-randSeq-method.Rd:12): Warning: missing </ul> before </div>
lambda.html:46:1 (lambda.Rd:10): Warning: missing </ul> before </div>
mti.html:46:1 (mti.Rd:10): Warning: missing </ul> before </div>
mu.html:46:1 (mu.Rd:10): Warning: missing </ul> before </div>
overview.html:278:1 (overview.Rd:144): Warning: missing </ul> before </div>
scale.html:46:1 (scale.Rd:10): Warning: missing </ul> before </div>
seed.html:48:1 (seed.Rd:11): Warning: missing </ul> before </div>
shape.html:46:1 (shape.Rd:10): Warning: missing </ul> before </div>
sigma.html:46:1 (sigma.Rd:10): Warning: missing </ul> before </div>
File ‘randomizr/libs/randomizr.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
NEWS.html:112:1 (NEWS.Rd:64): Warning: <h3> anchor "Changes-in-version-1.1.3.5" already defined
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Saip Ciss <saip.ciss@wanadoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Saip",
                    family = "Ciss",
                    role = c("aut", "cre"),
                    email = "saip.ciss@wanadoo.fr")
as necessary.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##experimental
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Siddharth R <r.siddharthcse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aghila",
                      family = "G",
                      role = "aut"),
               person(given = "Siddharth",
                      family = "R",
                      role = c("aut", "cre"),
                      email = "r.siddharthcse@gmail.com"))
as necessary.
Found the following HTML validation problems:
randtests.aux.html:52:1 (randtests.aux.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Mihai Valcu <valcu@orn.mpg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jay Burns <jay.burns@sruc.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Vasyl Pihur <vpihur@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vasyl",
                      family = "Pihur",
                      role = c("aut", "cre"),
                      email = "vpihur@gmail.com"),
               person(given = "Somnath",
                      family = "Datta",
                      role = "aut",
                      email = "somnath.datta@louisville.edu"),
               person(given = "Susmita",
                      family = "Datta",
                      role = "aut",
                      email = "susmita.datta@louisville.edu"))
as necessary.
Maintainer: ‘Quentin Grimonprez <quentingrim@yahoo.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
show-methods.html:50:1 (show-methods.Rd:13): Warning: missing </ul> before </div>
sub-Rankclust-method.html:56:1 (sub-Rankclust-method.Rd:14): Warning: missing </ul> before </div>
summary-Rankclust-method.html:51:1 (summary-Rankclust-method.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Zhaozhi Qian <qianzhaozhi@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhaozhi",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "qianzhaozhi@connect.hku.hk")
as necessary.
Found the following HTML validation problems:
GenerateExample.html:57:1 (GenerateExample.Rd:14): Warning: missing </ul> before </div>
GenerateExampleTopQ.html:53:1 (GenerateExampleTopQ.Rd:12): Warning: missing </ul> before </div>
ModelSummary.html:47:1 (ModelSummary.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Frank Konietschke <frank.konietschke@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre"),
                      email = "frank.konietschke@charite.de"),
               person(given = "Sarah",
                      family = "Friedrich",
                      role = "aut"),
               person(given = "Edgar",
                      family = "Brunner",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"))
as necessary.
checkRd: (-1) grottaBar.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:83: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Hsiuying Wang <wang@stat.nycu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hsiuying",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wang@stat.nycu.edu.tw"),
               person(given = "Yu-Chun",
                      family = "Lin",
                      role = "aut"),
               person(given = "Wan-Ting",
                      family = "Huang",
                      role = "aut"))
as necessary.
checkRd: (-1) rankL2R.Rd:18: Lost braces; missing escapes or markup?
    18 | where the vector dimension is 2^{response.number}.}
       |                                 ^
Found the following HTML validation problems:
get_parameters.html:47:1 (get_parameters.Rd:10): Warning: missing </ul> before </div>
get_schema_graphviz_dot.html:60:1 (get_schema_graphviz_dot.Rd:20): Warning: missing </ul> before </div>
get_schema_structure.html:56:1 (get_schema_structure.Rd:14): Warning: missing </ul> before </div>
print.rapi_api.html:51:1 (print.rapi_api.Rd:12): Warning: missing </ul> before </div>
print.rapi_operation.html:51:1 (print.rapi_operation.Rd:12): Warning: missing </ul> before </div>
print.rapi_schema_function.html:51:1 (print.rapi_schema_function.Rd:12): Warning: missing </ul> before </div>
print_wrap.html:48:1 (print_wrap.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Running examples in ‘RapidoPGS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rapidopgs_single
> ### Title: Compute PGS from GWAS summary statistics using posteriors from
> ###   Wakefield's approximate Bayes Factors
> ### Aliases: rapidopgs_single
> 
> ### ** Examples
> 
> sumstats <- data.table(SNPID=c("rs139096444","rs3843766","rs61977545", "rs544733737",
+ 		"rs2177641", "rs183491817", "rs72995775","rs78598863", "rs1411315"), 
+ 		CHR=c(4,20,14,2,4,6,6,21,13), 
+ 		BP=c(1479959, 13000913, 29107209, 203573414, 57331393, 11003529, 149256398, 
+ 				25630085, 79166661), 
+ 		REF=c("C","C","C","T","G","C","C","G","T"), 
+ 		ALT=c("A","T","T","A","A","A","T","A","C"), 
+ 		BETA=c(0.012,0.0079,0.0224,0.0033,0.0153,0.058,0.0742,0.001,-0.0131),
+ 		SE=c(0.0099,0.0066,0.0203,0.0171,0.0063,0.0255,0.043,0.0188,0.0074))
> 
> PGS  <- rapidopgs_single(sumstats,  trait = "cc")
Assigning LD blocks...
Loading required namespace: GenomeInfoDb
Failed with error:  ‘there is no package called ‘GenomeInfoDb’’
Error in .requirePackage(package) : 
  unable to load required package ‘GenomeInfoDb’
Calls: rapidopgs_single ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Maintainer: ‘Markus Loecher <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = "Madhav",
                      family = "Kumar",
                      role = "aut",
                      email = "madhavkumar2005@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘evds_table_api.R’ ‘excel_internal.R’ ‘request_funcs.R’
    ‘sp_df_utils.R’
checkRd: (-1) user_log_dir.Rd:48: Lost braces
    48 | \\env{$XDG_CACHE_HOME} if defined
       |      ^
Found the following HTML validation problems:
as.character.rapport.inputs.html:51:1 (as.character.rapport.inputs.Rd:12): Warning: missing </ul> before </div>
as.character.rapport.meta.html:51:1 (as.character.rapport.meta.Rd:12): Warning: missing </ul> before </div>
as.yaml.bool.html:46:1 (as.yaml.bool.Rd:10): Warning: missing </ul> before </div>
check.input.value.html:58:1 (check.input.value.Rd:18): Warning: missing </ul> before </div>
check.input.value.class.html:58:1 (check.input.value.class.Rd:18): Warning: missing </ul> before </div>
check.report.chunks.html:50:1 (check.report.chunks.Rd:12): Warning: missing </ul> before </div>
check.tpl.html:63:1 (check.tpl.Rd:21): Warning: missing </ul> before </div>
guess.input.html:46:1 (guess.input.Rd:10): Warning: missing </ul> before </div>
guess.input.description.html:46:1 (guess.input.description.Rd:10): Warning: missing </ul> before </div>
guess.input.label.html:46:1 (guess.input.label.Rd:10): Warning: missing </ul> before </div>
guess.input.name.html:46:1 (guess.input.name.Rd:10): Warning: missing </ul> before </div>
guess.l.html:63:1 (guess.l.Rd:21): Warning: missing </ul> before </div>
guess.old.input.length.html:50:1 (guess.old.input.length.Rd:12): Warning: missing </ul> before </div>
guess.old.input.type.html:46:1 (guess.old.input.type.Rd:10): Warning: missing </ul> before </div>
print.rapport.info.html:51:1 (print.rapport.info.Rd:12): Warning: missing </ul> before </div>
print.rapport.inputs.html:51:1 (print.rapport.inputs.Rd:12): Warning: missing </ul> before </div>
print.rapport.meta.html:51:1 (print.rapport.meta.Rd:12): Warning: missing </ul> before </div>
rapport.renew.html:50:1 (rapport.renew.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
run_models.html:83:1 (run_models.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Luis Cayuela <luis.cayuela@urjc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Cayuela",
                      role = c("aut", "cre"),
                      email = "luis.cayuela@urjc.es"),
               person(given = c("Nicholas", "J."),
                      family = "Gotelli",
                      role = "aut"))
as necessary.
Maintainer: ‘Boris Leroy <leroy.boris@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Boris",
                    family = "Leroy",
                    role = c("aut", "cre"),
                    email = "leroy.boris@gmail.com")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "Jiali",
                      family = "Mei",
                      role = "aut"),
               person(given = c("authors", "of", "the", "ARPACK", "library.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:311:1 (inst/NEWS.Rd:152): Warning: missing </ul> before </div>
NEWS.html:57:1 (inst/NEWS.Rd:23): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:72:1 (inst/NEWS.Rd:31): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:87:1 (inst/NEWS.Rd:39): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:106:1 (inst/NEWS.Rd:48): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:126:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:146:1 (inst/NEWS.Rd:71): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:169:1 (inst/NEWS.Rd:83): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:189:1 (inst/NEWS.Rd:93): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:207:1 (inst/NEWS.Rd:102): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:218:1 (inst/NEWS.Rd:107): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:239:1 (inst/NEWS.Rd:117): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:250:1 (inst/NEWS.Rd:122): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:265:1 (inst/NEWS.Rd:130): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:280:1 (inst/NEWS.Rd:138): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:296:1 (inst/NEWS.Rd:147): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Johann Gaebler <me@jgaeb.com>’

The Description field contains
  Disparate Impact" Jung et al. (2024) <arXiv:1809.05651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ye Tian <ye.t@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ye",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "ye.t@columbia.edu"),
               person(given = "Yang",
                      family = "Feng",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘findblocks_bc.Rd’ ‘getdata_bc.Rd’ ‘listdata_bc.Rd’ ‘opendata_bc.Rd’
    ‘utils.R’
Maintainer: ‘Joshua O'Brien <joshmobrien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "O'Brien",
                    role = c("aut", "cre"),
                    email = "joshmobrien@gmail.com")
as necessary.
Maintainer: ‘Martin Seilmayer <m.seilmayer@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "m.seilmayer@hzdr.de")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Found the following HTML validation problems:
getData.html:47:1 (getData.Rd:17): Warning: missing </ul> before </div>
projectRaster.html:114:1 (projectRaster.Rd:56): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
helpers.html:148:1 (helpers.Rd:71): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_function.html:46:1 (get_function.Rd:10): Warning: missing </ul> before </div>
get_precision.html:46:1 (get_precision.Rd:10): Warning: missing </ul> before </div>
get_rates.html:46:1 (get_rates.Rd:10): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ratematrix.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
Found the following HTML validation problems:
posterior_interval.optim_fit.html:59:1 (posterior_interval.optim_fit.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
AthenaDriver.html:66:1 (AthenaDriver.Rd:25): Warning: missing </ul> before </div>
sql_translate_env.html:51:1 (sql_translate_env.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Waldemar", "W."),
                      family = "Koczkodaj",
                      role = "aut"),
               person(given = "Feng",
                      family = "Li",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"))
as necessary.
checkRd: (-1) S1.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{m_bar}{the sample vector of moments for a specified vector $(h_{a,r},y)$}
       |                                                                      ^
checkRd: (-1) S1.Rd:16: Lost braces; missing escapes or markup?
    16 | \item{N_k}{index of the $ h_{a,r}$ function considered}
       |                             ^
Found the following HTML validation problems:
inverse.html:54:1 (inverse.Rd:14): Warning: missing </ul> before </div>
which.min2.html:54:1 (which.min2.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yixuan",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "yixuan.qiu@cos.name")
as necessary.
Maintainer: ‘Solveig Pospiech <s.pospiech@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Solveig",
                      family = "Pospiech",
                      role = c("aut", "cre"),
                      email = "s.pospiech@gmx.de"),
               person(given = "Wiebke",
                      family = "Fahlbusch",
                      role = "ctb"))
as necessary.
Maintainer: ‘Graham Williams <Graham.Williams@togaware.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) acquireAuditData.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) rattle.Rd:44: Escaped LaTeX specials: \_
Maintainer: ‘Ozvan Bocher <bocherozvan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ozvan",
                      family = "Bocher",
                      role = c("aut", "cre"),
                      email = "bocherozvan@gmail.com"),
               person(given = "Hervé",
                      family = "Perdry",
                      role = "aut"))
as necessary.
checkRd: (-1) rbm.haplos.power.Rd:35: Lost braces; missing escapes or markup?
    35 |   \item{simus.haplos}{ Which method to simulate the data, if \code{simus.haplos="freqs"}, {rbm.haplos.freqs()} is used, otherwise \code{rbm.haplos.thresholds()} is used.}
       |                                                                                           ^
Maintainer: ‘Davide Massidda <davide.massidda@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giulio",
                      family = "Vidotto",
                      role = "aut",
                      email = "giulio.vidotto@unipd.it"),
               person(given = "Stefano",
                      family = "Noventa",
                      role = "aut",
                      email = "stefano.noventa@uni-tuebingen.de"),
               person(given = "Davide",
                      family = "Massidda",
                      role = c("aut", "cre"),
                      email = "davide.massidda@gmail.com"),
               person(given = "Marco",
                      family = "Vicentini",
                      role = "aut",
                      email = "marco.vicentini@gmail.com"))
as necessary.
Found the following HTML validation problems:
convert_ss_to_polygons.html:45:1 (convert_ss_to_polygons.Rd:10): Warning: missing </ul> before </div>
interpolate_location.html:62:1 (interpolate_location.Rd:18): Warning: missing </ul> before </div>
remove_node_duplicates.html:45:1 (remove_node_duplicates.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
convert_to_native_raster.html:46:1 (convert_to_native_raster.Rd:10): Warning: missing </ul> before </div>
make_vignette_overlay.html:73:1 (make_vignette_overlay.Rd:27): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘render_model.R’
Found the following HTML validation problems:
cross.html:50:1 (cross.Rd:12): Warning: missing </ul> before </div>
unit_vector.html:46:1 (unit_vector.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
drawkeyfunction_lines.html:54:1 (drawkeyfunction_lines.Rd:14): Warning: missing </ul> before </div>
drawkeyfunction_points.html:54:1 (drawkeyfunction_points.Rd:14): Warning: missing </ul> before </div>
generate_soil_textures.html:69:1 (generate_soil_textures.Rd:27): Warning: missing </ul> before </div>
generate_surface.html:51:1 (generate_surface.Rd:13): Warning: missing </ul> before </div>
get_polygon_data_value.html:51:1 (get_polygon_data_value.Rd:15): Warning: missing </ul> before </div>
make_base.html:71:1 (make_base.Rd:29): Warning: missing </ul> before </div>
make_base_triangulated.html:54:1 (make_base_triangulated.Rd:14): Warning: missing </ul> before </div>
make_lines.html:79:1 (make_lines.Rd:31): Warning: missing </ul> before </div>
make_shadow.html:61:1 (make_shadow.Rd:21): Warning: missing </ul> before </div>
make_water.html:69:1 (make_water.Rd:25): Warning: missing </ul> before </div>
make_waterlines.html:79:1 (make_waterlines.Rd:31): Warning: missing </ul> before </div>
render_snapshot_software.html:71:1 (render_snapshot_software.Rd:35): Warning: missing </ul> before </div>
translate_shape_string.html:46:1 (translate_shape_string.Rd:10): Warning: missing </ul> before </div>
write_stl.html:46:1 (write_stl.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Amanda Rehbein <amanda.rehbein@usp.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.ray_shape.html:51:1 (print.ray_shape.Rd:12): Warning: missing </ul> before </div>
print.ray_vertex_data.html:51:1 (print.ray_vertex_data.Rd:12): Warning: missing </ul> before </div>
save_png.html:54:1 (save_png.Rd:14): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BayesianOptimization.Rd: GP_fit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
get_est_vy.html:46:1 (get_est_vy.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Wilson Freitas <wilson.freitas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilson",
                    family = "Freitas",
                    role = c("aut", "cre"),
                    email = "wilson.freitas@gmail.com")
as necessary.
Found the following HTML validation problems:
show-methods.html:56:1 (show-methods.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
AIC.RegressionByComposition.html:56:1 (AIC.RegressionByComposition.Rd:15): Warning: missing </ul> before </div>
coef.RegressionByComposition.html:52:1 (coef.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
fitted.RegressionByComposition.html:52:1 (fitted.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
logLik.RegressionByComposition.html:52:1 (logLik.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
predict.RegressionByComposition.html:56:1 (predict.RegressionByComposition.Rd:15): Warning: missing </ul> before </div>
summary.RegressionByComposition.html:56:1 (summary.RegressionByComposition.Rd:15): Warning: missing </ul> before </div>
vcov.RegressionByComposition.html:52:1 (vcov.RegressionByComposition.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Diego Gallardo <dgallardo@ubiobio.cl>’

The Description field contains
  Gallardo and Saulo <arXiv:2110.04428> The package also provides tools
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Failed with error:  ‘unused argument (quitely = TRUE)’

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
File ‘Rbeast/libs/Rbeast.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
blocks_str.html:56:1 (blocks_str.Rd:16): Warning: missing </ul> before </div>
chunk_blocks.html:69:1 (chunk_blocks.Rd:25): Warning: missing </ul> before </div>
chunk_origin.html:52:1 (chunk_origin.Rd:15): Warning: missing </ul> before </div>
nbt_list_of.html:46:1 (nbt_list_of.Rd:10): Warning: missing </ul> before </div>
rac_cast.html:58:1 (rac_cast.Rd:16): Warning: missing </ul> before </div>
rac_type_full.html:49:1 (rac_type_full.Rd:13): Warning: missing </ul> before </div>
to_rnbt_value.html:50:1 (to_rnbt_value.Rd:12): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Wacek Kusnierczyk <waku@idi.ntnu.no>’
  Authors@R: ‘Wacek Kusnierczyk [aut, cre], Dirk Eddelbuettel [ctb], Berend Hasselman [ctb]’
Found the following HTML validation problems:
dlink-set.html:53:1 (dlink-set.Rd:15): Warning: missing </ul> before </div>
fill.html:51:1 (fill.Rd:12): Warning: missing </ul> before </div>
integrate_density_log.html:72:1 (integrate_density_log.Rd:27): Warning: missing </ul> before </div>
knn.html:70:1 (knn.Rd:22): Warning: missing </ul> before </div>
support.html:46:1 (support.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rmMessWarn.html:47:1 (rmMessWarn.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
documentation_biom.rbiom.html:56:1 (documentation_biom.rbiom.Rd:15): Warning: missing </ul> before </div>
documentation_default.html:458:1 (documentation_default.Rd:277): Warning: missing </ul> before </div>
documentation_dist_test.html:57:1 (documentation_dist_test.Rd:16): Warning: missing </ul> before </div>
documentation_rank.2.html:46:1 (documentation_rank.2.Rd:13): Warning: missing </ul> before </div>
documentation_rank.NULL.html:46:1 (documentation_rank.NULL.Rd:13): Warning: missing </ul> before </div>
documentation_taxa.4.html:44:1 (documentation_taxa.4.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
option_string.html:48:1 (option_string.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Jialun Zhang <reatank@foxmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jialun",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "reatank@foxmail.com"),
               person(given = "Zhilan",
                      family = "Fan",
                      role = "aut"),
               person(given = "Hang",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
write.jkl.html:50:1 (write.jkl.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LoggerAxytrek-class.html:49:1 (LoggerAxytrek-class.Rd:19): Warning: missing </ul> before </div>
LoggerCats-class.html:49:1 (LoggerCats-class.Rd:19): Warning: missing </ul> before </div>
LoggerData-class.html:49:1 (LoggerData-class.Rd:19): Warning: missing </ul> before </div>
LoggerList-class.html:47:1 (LoggerList-class.Rd:17): Warning: missing </ul> before </div>
LoggerLul-class.html:49:1 (LoggerLul-class.Rd:19): Warning: missing </ul> before </div>
LoggerWacu-class.html:49:1 (LoggerWacu-class.Rd:19): Warning: missing </ul> before </div>
Metric-class.html:60:1 (Metric-class.Rd:27): Warning: missing </ul> before </div>
MetricList-class.html:89:1 (MetricList-class.Rd:37): Warning: missing </ul> before </div>
MetricList-class.html:45:1 (MetricList-class.Rd:20): Warning: <h4> anchor "Return-Value" already defined
MetricList-class.html:53:1 (MetricList-class.Rd:23): Warning: <h4> anchor "Return-Value" already defined
MetricList-class.html:67:1 (MetricList-class.Rd:32): Warning: <h4> anchor "Return-Value" already defined
ZoomHistory-class.html:49:1 (ZoomHistory-class.Rd:19): Warning: missing </ul> before </div>
axytrek2h5.html:54:1 (axytrek2h5.Rd:14): Warning: missing </ul> before </div>
cats2h5.html:54:1 (cats2h5.Rd:14): Warning: missing </ul> before </div>
demoaxytrek2h5.html:50:1 (demoaxytrek2h5.Rd:12): Warning: missing </ul> before </div>
democats2h5.html:50:1 (democats2h5.Rd:12): Warning: missing </ul> before </div>
democatsmkbe.html:54:1 (democatsmkbe.Rd:14): Warning: missing </ul> before </div>
demolul2h5.html:50:1 (demolul2h5.Rd:12): Warning: missing </ul> before </div>
demowacu2h5.html:50:1 (demowacu2h5.Rd:12): Warning: missing </ul> before </div>
lul2h5.html:54:1 (lul2h5.Rd:14): Warning: missing </ul> before </div>
wacu2h5.html:63:1 (wacu2h5.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
BM25.html:142:1 (BM25.Rd:163): Warning: <h5> anchor "Usage" already defined
BM25.html:148:1 (BM25.Rd:167): Warning: <h5> anchor "Returns" already defined
BM25.html:155:1 (BM25.Rd:170): Warning: <h5> anchor "Examples" already defined
BM25.html:174:1 (BM25.Rd:184): Warning: <h5> anchor "Usage" already defined
BM25.html:180:1 (BM25.Rd:188): Warning: <h5> anchor "Arguments" already defined
BM25.html:193:1 (BM25.Rd:195): Warning: <h5> anchor "Returns" already defined
BM25.html:200:1 (BM25.Rd:198): Warning: <h5> anchor "Examples" already defined
BM25.html:219:1 (BM25.Rd:212): Warning: <h5> anchor "Usage" already defined
BM25.html:225:1 (BM25.Rd:216): Warning: <h5> anchor "Returns" already defined
BM25.html:232:1 (BM25.Rd:219): Warning: <h5> anchor "Examples" already defined
BM25.html:253:1 (BM25.Rd:235): Warning: <h5> anchor "Usage" already defined
BM25.html:259:1 (BM25.Rd:239): Warning: <h5> anchor "Arguments" already defined
BM25.html:274:1 (BM25.Rd:248): Warning: <h5> anchor "Returns" already defined
BM25.html:281:1 (BM25.Rd:251): Warning: <h5> anchor "Examples" already defined
BM25.html:302:1 (BM25.Rd:267): Warning: <h5> anchor "Usage" already defined
BM25.html:308:1 (BM25.Rd:271): Warning: <h5> anchor "Arguments" already defined
BM25.html:323:1 (BM25.Rd:280): Warning: <h5> anchor "Returns" already defined
BM25.html:330:1 (BM25.Rd:283): Warning: <h5> anchor "Examples" already defined
BM25.html:351:1 (BM25.Rd:299): Warning: <h5> anchor "Usage" already defined
BM25.html:357:1 (BM25.Rd:303): Warning: <h5> anchor "Arguments" already defined
BM25.html:378:1 (BM25.Rd:318): Warning: <h5> anchor "Returns" already defined
BM25.html:385:1 (BM25.Rd:321): Warning: <h5> anchor "Examples" already defined
BM25.html:416:1 (BM25.Rd:347): Warning: <h5> anchor "Usage" already defined
BM25.html:422:1 (BM25.Rd:351): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Abdelmoneim Amer Desouki <desouki@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Abdelmoneim", "Amer"),
                    family = "Desouki",
                    role = c("aut", "cre"),
                    email = "desouki@hhu.de")
as necessary.

The Description field contains
  Desouki, M. Roeder, A. Ngonga (2019) <arXiv:1903.10326>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marco Scutari <scutari@bnlearn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Baptiste",
                      family = "Denis",
                      role = c("aut", "cre")),
               person(given = "Marco",
                      family = "Scutari",
                      role = c("ctb", "cre"),
                      email = "scutari@bnlearn.com"))
as necessary.
Found the following HTML validation problems:
B4.html:41:1 (B4.Rd:8): Warning: missing </ul> before </div>
C12.html:41:1 (C12.Rd:8): Warning: missing </ul> before </div>
C13.html:40:1 (C13.Rd:7): Warning: missing </ul> before </div>
C50.html:41:1 (C50.Rd:7): Warning: missing </ul> before </div>
D9.html:40:1 (D9.Rd:7): Warning: missing </ul> before </div>
M1.html:40:1 (M1.Rd:7): Warning: missing </ul> before </div>
S10.html:42:1 (S10.Rd:8): Warning: missing </ul> before </div>
S33.html:41:1 (S33.Rd:7): Warning: missing </ul> before </div>
S40.html:41:1 (S40.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Luke J. Keele <luke.keele@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luke", "J."),
                    family = "Keele",
                    role = c("aut", "cre"),
                    email = "luke.keele@gmail.com")
as necessary.
Maintainer: ‘Bahadir Yuzbasi <b.yzb@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bahadir",
                      family = "Yuzbasi",
                      role = c("aut", "cre"),
                      email = "b.yzb@hotmail.com"),
               person(given = "Mohammad",
                      family = "Arashi",
                      role = "aut"),
               person(given = "Fikri",
                      family = "Akdeniz",
                      role = "aut"))
as necessary.

The Description field contains
  Yuzbasi et al. (2019) <arXiv:1910.03660>. Special cases of this
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rbridge.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
show-methods.html:53:1 (show-methods.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Serguei Rouzinov <rouzinovs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Serguei",
                      family = "Rouzinov",
                      role = c("aut", "cre"),
                      email = "rouzinovs@gmail.com"),
               person(given = "André",
                      family = "Berchtold",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/xiangzhou09/rbw
which should likely be
  https://github.com/xiangzhou09/rbw/issues
instead.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Baoluo",
                      family = "Sun",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Sun and Tan (2020) <arXiv:2009.09286>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Amir Goldberg <amirgo@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amir",
                      family = "Goldberg",
                      role = c("aut", "cre"),
                      email = "amirgo@stanford.edu"),
               person(given = c("Sarah", "K."),
                      family = "Stein",
                      role = "aut"))
as necessary.
Maintainer: ‘Qiao Liu <liuqiao@stanford.edu>’

The Description field contains
  methods is given in Liu (2022) <arXiv:2212.05925>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Herdiantri Sufriyana <herdi@tmu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rcausim/blob/master/doc/causal_simulation_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
Maintainer: ‘Dr. Fayed Alshammri <fayed333@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fayed",
                      family = "Alshammri",
                      role = "aut"),
               person(given = c("Dr.", "Fayed"),
                      family = "Alshammri",
                      role = "cre",
                      email = "fayed333@hotmail.com"))
as necessary.
Maintainer: ‘Jean Morrison <jeanm@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean",
                    family = "Morrison",
                    role = c("aut", "cre"),
                    email = "jeanm@uchicago.edu")
as necessary.

The Description field contains
  <arXiv:1702.06986>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘temp.RData’
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "geyer@umn.edu"),
               person(given = c("Glen", "D."),
                      family = "Meeden",
                      role = "aut",
                      email = "gmeeden@umn.edu"),
               person(given = c("incorporates", "code", "from", "cddlib", "written", "by", "Komei"),
                      family = "Fukuda",
                      role = "aut",
                      email = "fukuda@ifor.math.ethz.ch",
                      comment = c(ROR = "ver 0.94f")))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get.fingerprint.Rd: fingerprint-class, featvec-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
copy.image.to.clipboard.html:51:1 (copy.image.to.clipboard.Rd:12): Warning: missing </ul> before </div>
do.aromaticity.html:46:1 (do.aromaticity.Rd:10): Warning: missing </ul> before </div>
do.isotopes.html:46:1 (do.isotopes.Rd:10): Warning: missing </ul> before </div>
generate.formula.html:71:1 (generate.formula.Rd:27): Warning: missing </ul> before </div>
generate.formula.iter.html:76:1 (generate.formula.iter.Rd:30): Warning: missing </ul> before </div>
get.depictor.html:98:1 (get.depictor.Rd:42): Warning: missing </ul> before </div>
get.exact.mass.html:46:1 (get.exact.mass.Rd:10): Warning: missing </ul> before </div>
get.formula.html:50:1 (get.formula.Rd:12): Warning: missing </ul> before </div>
get.isotopes.pattern.html:50:1 (get.isotopes.pattern.Rd:12): Warning: missing </ul> before </div>
get.mcs.html:54:1 (get.mcs.Rd:14): Warning: missing </ul> before </div>
get.mol2formula.html:50:1 (get.mol2formula.Rd:12): Warning: missing </ul> before </div>
get.natural.mass.html:46:1 (get.natural.mass.Rd:10): Warning: missing </ul> before </div>
get.total.charge.html:46:1 (get.total.charge.Rd:10): Warning: missing </ul> before </div>
get.total.formal.charge.html:46:1 (get.total.formal.charge.Rd:10): Warning: missing </ul> before </div>
isvalid.formula.html:50:1 (isvalid.formula.Rd:12): Warning: missing </ul> before </div>
matches.html:54:1 (matches.Rd:15): Warning: missing </ul> before </div>
set.charge.formula.html:50:1 (set.charge.formula.Rd:12): Warning: missing </ul> before </div>
view.image.2d.html:50:1 (view.image.2d.Rd:12): Warning: missing </ul> before </div>
view.molecule.2d.html:69:1 (view.molecule.2d.Rd:24): Warning: missing </ul> before </div>
view.table.html:54:1 (view.table.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cdo_execute.html:88:1 (cdo_execute.Rd:41): Warning: missing </ul> before </div>
cdo_set_output.html:50:1 (cdo_set_output.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
Maintainer: ‘Bruno Melo <ctbrunomelo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bruno", "M.", "S.", "S."),
                      family = "Melo",
                      role = "aut"),
               person(given = "Bruno",
                      family = "Melo",
                      role = "cre",
                      email = "ctbrunomelo@gmail.com"))
as necessary.
checkRd: (-1) nc_open_CGLS.Rd:29-32: Lost braces
    29 | if(resolution == "300m"){
       |                         ^
checkRd: (-1) nc_open_CGLS.Rd:33-36: Lost braces
    33 | if(resolution == "1km"){
       |                        ^
Found the following HTML validation problems:
countdown.html:50:1 (countdown.Rd:12): Warning: missing </ul> before </div>
html_img.html:50:1 (html_img.Rd:12): Warning: missing </ul> before </div>
last_update.html:50:1 (last_update.Rd:12): Warning: missing </ul> before </div>
str_rank.html:60:1 (str_rank.Rd:20): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:212:1 (inst/NEWS.Rd:90): Warning: missing </ul> before </div>
NEWS.html:43:1 (inst/NEWS.Rd:15): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:73:1 (inst/NEWS.Rd:28): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:88:1 (inst/NEWS.Rd:36): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:112:1 (inst/NEWS.Rd:47): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:127:1 (inst/NEWS.Rd:55): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:153:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:180:1 (inst/NEWS.Rd:80): Warning: <h4> anchor "NEW-FEATURES" already defined
checkRd: (-1) Rchoice.Rd:159: Lost braces; missing escapes or markup?
   159 |  \code{ranp}. If the parameters are assumed to be normally distributed \eqn{\beta_i ~ N(\beta, \Sigma)}, then the random parameter are constructed as: \deqn{\beta_{ir}=\beta+L\omega_{ir}} where \eqn{LL'=\Sigma} and \eqn{\omega_{ir}} is the {r}-th draw from standard normal distribution for individual \eqn{i}. 
       |                                                                                                                                                                                                                                                 ^
Found the following HTML validation problems:
rFormula.html:77:1 (rFormula.Rd:29): Warning: missing </ul> before </div>
Maintainer: ‘Anne Philippe <anne.philippe@univ-nantes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne",
                      family = "Philippe",
                      role = c("aut", "cre"),
                      email = "anne.philippe@univ-nantes.fr"),
               person(given = "Marie-Anne",
                      family = "Vibet",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘data.csv’
Maintainer: ‘Hongen Zhang <hzhang.henry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hongen",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang.henry@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
sql_variant.html:50:1 (sql_variant.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Sebastien Bihorel <sb.pmlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Bihorel",
                    role = c("aut", "cre"),
                    email = "sb.pmlab@gmail.com")
as necessary.
Maintainer: ‘Wolfgang Konen <wolfgang.konen@fh-koeln.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Konen",
                      role = c("aut", "cre"),
                      email = "wolfgang.konen@fh-koeln.de"),
               person(given = "Nikolaus",
                      family = "Hansen",
                      role = "aut",
                      email = "hansen.AT.lri.fr"))
as necessary.
Found the following files/directories:
  ‘outcmaesdisp.dat’
Found the following HTML validation problems:
myrep.html:51:1 (myrep.Rd:13): Warning: missing </ul> before </div>
print.rcmdcheck.html:66:1 (print.rcmdcheck.Rd:23): Warning: missing </ul> before </div>
print.rcmdcheck_comparison.html:57:1 (print.rcmdcheck_comparison.Rd:16): Warning: missing </ul> before </div>
xopen.rcmdcheck.html:61:1 (xopen.rcmdcheck.Rd:18): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  RcmdrPlugin.cpd.Rd: cpd, Rcmdr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Aurora Torrente <etorrent@est-econ.uc3m.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Lopez-Pintado",
                      role = "aut",
                      email = "sl2929@columbia.edu"),
               person(given = "Aurora",
                      family = "Torrente.",
                      role = "aut",
                      email = "etorrent@est-econ.uc3m.es"),
               person(given = "Aurora",
                      family = "Torrente",
                      role = "cre",
                      email = "etorrent@est-econ.uc3m.es"))
as necessary.
Maintainer: ‘David Leiva <dleivaur@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maribel",
                      family = "Pero",
                      role = "aut",
                      email = "mpero@ub.edu"),
               person(given = "David",
                      family = "Leiva",
                      role = c("aut", "cre"),
                      email = "dleivaur@ub.edu"),
               person(given = "Joan",
                      family = "Guardia",
                      role = "aut",
                      email = "jguardia@ub.edu"),
               person(given = "Antonio",
                      family = "Solanas",
                      role = "aut",
                      email = "antonio.solanas@ub.edu"))
as necessary.
Maintainer: ‘Daniel-Corneliu Leucuta <danny.ldc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel-Corneliu",
                    family = "Leucuta",
                    role = c("aut", "cre"),
                    email = "danny.ldc@gmail.com")
as necessary.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Maintainer: ‘Yoshinobu Kanda <ycanda-tky@umin.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yoshinobu",
                    family = "Kanda",
                    role = c("aut", "cre"),
                    email = "ycanda-tky@umin.ac.jp")
as necessary.
Maintainer: ‘Francois Husson <francois.husson@institut-agro.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Husson",
                      role = c("aut", "cre"),
                      email = "francois.husson@institut-agro.fr"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Le",
                      role = "aut"))
as necessary.
Maintainer: ‘Richard M. Heiberger <rmh@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Richard", "M."),
                      family = "Heiberger",
                      role = c("aut", "cre"),
                      email = "rmh@temple.edu"),
               person(given = c("with", "contributions", "from", "Burt"),
                      family = "Holland",
                      role = "aut"))
as necessary.
Maintainer: ‘A. C. Del Re <acdelre@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "C.", "Del"),
                    family = "Re",
                    role = c("aut", "cre"),
                    email = "acdelre@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) RcmdrPlugin.MA-package.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) RcmdrPlugin.MA-package.Rd:23: Escaped LaTeX specials: \&
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrew",
                      family = "Heiss",
                      role = c("aut", "cre"),
                      email = "andrew@andrewheiss.com"),
               person(given = "Richard",
                      family = "Payne",
                      role = "aut"),
               person(given = "Christa",
                      family = "Schank",
                      role = "aut"),
               person(given = "Jessica",
                      family = "Reese",
                      role = "aut"))
as necessary.
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Maintainer: ‘Achmad Fauzi Bagus F <fauzi.pandya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Monalisa", "Sipahutar,Setia"),
                      family = "Pramana",
                      role = "aut",
                      email = "11.6790@stis.ac.id"),
               person(given = "Achmad",
                      family = "Fauzi",
                      role = c("aut", "cre"),
                      email = "fauzi.pandya@gmail.com"))
as necessary.
Maintainer: ‘Arto Luoma <arto.luoma@wippies.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arto",
                    family = "Luoma",
                    role = c("aut", "cre"),
                    email = "arto.luoma@wippies.com")
as necessary.
Maintainer: ‘Marcelo Goulart Correia <mgoulart.inc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcelo", "Goulart"),
                    family = "Correia",
                    role = c("aut", "cre"),
                    email = "mgoulart.inc@gmail.com")
as necessary.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
Found the following HTML validation problems:
Utilities.html:74:1 (Utilities.Rd:40): Warning: missing </ul> before </div>
checkRd: (-1) nonlinearAR1.sim.Rd:8: Lost braces; missing escapes or markup?
     8 | of the form z_n = g(z_{n-1}) + epsilon. A normal distribution is assumed for the innovations.
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘Erich Neuwirth <erich.neuwirth@univie.ac.at>’

The Description field contains
  Cynthia Brewer as described at http://colorbrewer2.org.
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
conesa_cols.html:46:1 (conesa_cols.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
nagelkerkeHermite.html:48:1 (nagelkerkeHermite.Rd:10): Warning: missing </ul> before </div>
pairwiseDifferences.html:48:1 (pairwiseDifferences.Rd:10): Warning: missing </ul> before </div>
pairwiseOrdinalMatrix.html:47:1 (pairwiseOrdinalMatrix.Rd:10): Warning: missing </ul> before </div>
pairwiseOrdinalPairedMatrix.html:49:1 (pairwiseOrdinalPairedMatrix.Rd:11): Warning: missing </ul> before </div>
pairwiseOrdinalPairedTest.html:47:1 (pairwiseOrdinalPairedTest.Rd:10): Warning: missing </ul> before </div>
pairwiseOrdinalTest.html:47:1 (pairwiseOrdinalTest.Rd:10): Warning: missing </ul> before </div>
pairwiseRobustMatrix.html:47:1 (pairwiseRobustMatrix.Rd:10): Warning: missing </ul> before </div>
pairwiseRobustTest.html:46:1 (pairwiseRobustTest.Rd:10): Warning: missing </ul> before </div>
pairwiseSignMatrix.html:46:1 (pairwiseSignMatrix.Rd:10): Warning: missing </ul> before </div>
pairwiseSignTest.html:46:1 (pairwiseSignTest.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
option.rcontroll.html:47:1 (option.rcontroll.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
optimize_files.html:69:1 (optimize_files.Rd:23): Warning: missing </ul> before </div>
optimize_folder.html:81:1 (optimize_folder.Rd:31): Warning: missing </ul> before </div>
optimize_text.html:56:1 (optimize_text.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Joseph Wood <jwood000@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://github.com/jwood000/RcppAlgos/issues/9#issue-467908452Issue%20#9
    From: NEWS.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Found the following HTML validation problems:
armadillo_throttle_cores.html:50:1 (armadillo_throttle_cores.Rd:13): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RcppCensSpatial.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"),
               person(given = c("based", "on", "code", "written", "during"),
                      family = "2005",
                      role = "aut"),
               person(given = c("2006", "by", "Dominick"),
                      family = "Samperi",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"),
               person(given = c("with", "contributions", "by", "David"),
                      family = "Reiss",
                      role = "aut"),
               person(given = c("and", "based", "on", "code", "written", "during"),
                      family = "2005",
                      role = "aut"),
               person(given = c("2006", "by", "Dominick"),
                      family = "Samperi",
                      role = "aut"))
as necessary.
Maintainer: ‘Zach DeBruine <zacharydebruine@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zach",
                    family = "DeBruine",
                    role = c("aut", "cre"),
                    email = "zacharydebruine@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
'library' or 'require' call not declared from: ‘rbenchmark’
Found the following HTML validation problems:
checks.html:120:1 (checks.Rd:70): Warning: missing </ul> before </div>
cl_functions.html:86:1 (cl_functions.Rd:38): Warning: missing </ul> before </div>
get_pkg_registry.html:46:1 (get_pkg_registry.Rd:10): Warning: missing </ul> before </div>
subcorpus_get_ranges.html:47:1 (subcorpus_get_ranges.Rd:11): Warning: missing </ul> before </div>
tmp_registry.html:49:1 (tmp_registry.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"))
as necessary.
Maintainer: ‘Shusei Eshima <shuseieshima@gmail.com>’

The Description field contains
  (2023) <arXiv:2305.19045>. Jagger uses patterns derived from
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:206:1 (inst/NEWS.Rd:96): Warning: missing </ul> before </div>
NEWS.html:51:1 (inst/NEWS.Rd:18): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:66:1 (inst/NEWS.Rd:26): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:83:1 (inst/NEWS.Rd:36): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:102:1 (inst/NEWS.Rd:46): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:120:1 (inst/NEWS.Rd:55): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:135:1 (inst/NEWS.Rd:63): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:149:1 (inst/NEWS.Rd:69): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:169:1 (inst/NEWS.Rd:80): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:184:1 (inst/NEWS.Rd:88): Warning: <h4> anchor "NEW-FEATURES" already defined
Found the following HTML validation problems:
tbbLibraryPath.html:50:1 (tbbLibraryPath.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Karl Forner <karl.forner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Forner",
                    role = c("aut", "cre"),
                    email = "karl.forner@gmail.com")
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dirk", "Eddelbuettel;", "the"),
                      family = "authors",
                      role = "aut"),
               person(given = c("contributors", "of"),
                      family = "QuantLib",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "cre",
                      email = "edd@debian.org"))
as necessary.
Found the following HTML validation problems:
Rcpp-internal.html:61:1 (Rcpp-internal.Rd:18): Warning: missing </ul> before </div>
populate.html:52:1 (populate.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Kevin Ushey <kevinushey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Ushey",
                    role = c("aut", "cre"),
                    email = "kevinushey@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘print.rcpptimer.R’
Found the following HTML validation problems:
print.rcpptimer.html:60:1 (print.rcpptimer.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Jonathan Olmsted <jpolmsted@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rtn.Rd’:
    http://dx.doi.org/10.1007/BF00143942
Maintainer: ‘Marc A. Suchard <msuchard@ucla.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Found the following HTML validation problems:
extract_txt_char.html:54:1 (extract_txt_char.Rd:14): Warning: missing </ul> before </div>
extract_txt_cons.html:54:1 (extract_txt_cons.Rd:14): Warning: missing </ul> before </div>
extract_txt_death.html:54:1 (extract_txt_death.Rd:14): Warning: missing </ul> before </div>
extract_txt_drug.html:54:1 (extract_txt_drug.Rd:14): Warning: missing </ul> before </div>
extract_txt_hes_primary.html:54:1 (extract_txt_hes_primary.Rd:14): Warning: missing </ul> before </div>
extract_txt_linkage.html:50:1 (extract_txt_linkage.Rd:12): Warning: missing </ul> before </div>
extract_txt_obs.html:54:1 (extract_txt_obs.Rd:14): Warning: missing </ul> before </div>
extract_txt_pat.html:54:1 (extract_txt_pat.Rd:14): Warning: missing </ul> before </div>
extract_txt_prac.html:54:1 (extract_txt_prac.Rd:14): Warning: missing </ul> before </div>
extract_txt_prob.html:54:1 (extract_txt_prob.Rd:14): Warning: missing </ul> before </div>
extract_txt_ref.html:54:1 (extract_txt_ref.Rd:14): Warning: missing </ul> before </div>
implement_output.html:74:1 (implement_output.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Jamie Spaulding <jspaulding02@hamline.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jamie",
                      family = "Spaulding",
                      role = c("aut", "cre"),
                      email = "jspaulding02@hamline.edu"),
               person(given = "Keith",
                      family = "Morris",
                      role = "aut"))
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Maintainer: ‘J.S. Pierre <jean-sebastien.pierre@univ-rennes1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Sebastien",
                      family = "PIERRE",
                      role = c("aut", "cre")),
               person(given = "J.S.",
                      family = "Pierre",
                      role = "cre",
                      email = "jean-sebastien.pierre@univ-rennes1.fr"))
as necessary.
Found the following HTML validation problems:
GET_agency_id.html:46:1 (GET_agency_id.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Colin Millar <colin.millar@ices.dk>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rct3-package.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
  File ‘rct3.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
Maintainer: ‘Isidoro Garcia-Urquieta <isidoro.gu@gmail.com>’

The Description field contains
  <arXiv:1607.00698>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Fusion.html:100:1 (Fusion.Rd:94): Warning: <h5> anchor "Usage" already defined
Fusion.html:114:1 (Fusion.Rd:103): Warning: <h5> anchor "Usage" already defined
Fusion.html:128:1 (Fusion.Rd:112): Warning: <h5> anchor "Usage" already defined
Fusion.html:144:1 (Fusion.Rd:122): Warning: <h5> anchor "Usage" already defined
Fusion.html:150:1 (Fusion.Rd:126): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Wojciech Rosa <w.rosa@pollub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wojciech",
                    family = "Rosa",
                    role = c("aut", "cre"),
                    email = "w.rosa@pollub.pl")
as necessary.
Found the following HTML validation problems:
dot-downloader.html:46:1 (dot-downloader.Rd:10): Warning: missing </ul> before </div>
dot-ok_to_proceed.html:46:1 (dot-ok_to_proceed.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_markdown.html:50:1 (as_markdown.Rd:12): Warning: missing </ul> before </div>
md_document.html:65:1 (md_document.Rd:23): Warning: missing </ul> before </div>
output_format.html:60:1 (output_format.Rd:18): Warning: missing </ul> before </div>
read_rdfile.html:50:1 (read_rdfile.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
creatbin.html:50:1 (creatbin.Rd:12): Warning: missing </ul> before </div>
genList.html:50:1 (genList.Rd:12): Warning: missing </ul> before </div>
odd.html:46:1 (odd.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.CJMrdbwdensity.html:47:1 (print.CJMrdbwdensity.Rd:10): Warning: missing </ul> before </div>
print.CJMrddensity.html:47:1 (print.CJMrddensity.Rd:10): Warning: missing </ul> before </div>
summary.CJMrdbwdensity.html:47:1 (summary.CJMrdbwdensity.Rd:10): Warning: missing </ul> before </div>
summary.CJMrddensity.html:47:1 (summary.CJMrddensity.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Chi Seng Pun <cspun@ntu.edu.sg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chi", "Seng"),
                      family = "Pun",
                      role = c("aut", "cre"),
                      email = "cspun@ntu.edu.sg"),
               person(given = c("Matthew", "Zakharia"),
                      family = "Hadimaja",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
c.rdf.html:51:1 (c.rdf.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
client_cache_date.html:47:1 (client_cache_date.Rd:11): Warning: missing </ul> before </div>
collapse_api_responses.html:46:1 (collapse_api_responses.Rd:10): Warning: missing </ul> before </div>
download_datasets.html:97:1 (download_datasets.Rd:42): Warning: missing </ul> before </div>
last_api_update.html:46:1 (last_api_update.Rd:10): Warning: missing </ul> before </div>
rbind_list_base.html:46:1 (rbind_list_base.Rd:10): Warning: missing </ul> before </div>
read_dhs_dataset.html:66:1 (read_dhs_dataset.Rd:22): Warning: missing </ul> before </div>
response_is_json.html:46:1 (response_is_json.Rd:10): Warning: missing </ul> before </div>
response_to_json.html:46:1 (response_to_json.Rd:10): Warning: missing </ul> before </div>
unzip_special.html:88:1 (unzip_special.Rd:40): Warning: missing </ul> before </div>
update_rdhs_config.html:118:1 (update_rdhs_config.Rd:58): Warning: missing </ul> before </div>
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

The Description field contains
  A client library for 'The Guardian' (https://www.guardian.com/) and
Please enclose URLs in angle brackets (<...>).

The BugReports field in DESCRIPTION has
  https://github.com/ironholds/rdian
which should likely be
  https://github.com/ironholds/rdian/issues
instead.
Maintainer: ‘Gennaro Tedesco: <gennarotedesco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gennaro",
                    family = "Tedesco",
                    role = c("aut", "cre"),
                    email = "gennarotedesco@gmail.com")
as necessary.
Maintainer: ‘Christopher Bolen <cbolen1@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) farthest_point_sampling.Rd:28: Lost braces; missing escapes or markup?
    28 | space P = {p_1, ..., p_k}, such that each p_i is the farthest 
       |           ^
Maintainer: ‘Richard Reeve <richard.reeve@glasgow.ac.uk>’

The Description field contains
  <arXiv:1404.6520v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Ops.binary.html:51:1 (Ops.binary.Rd:12): Warning: missing </ul> before </div>
loadAttributes.html:50:1 (loadAttributes.Rd:12): Warning: missing </ul> before </div>
phy_abundance.html:55:1 (phy_abundance.Rd:17): Warning: missing </ul> before </div>
saveAttributes.html:46:1 (saveAttributes.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Christopher Strothmann <rdmpackage@gmail.com>’

The Description field contains
  presented in Strothmann et al. (2022) <arXiv:2201.03329> and Strothmann
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) computeCBMeasure.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Christian Graul <christian.graul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Graul",
                    role = c("aut", "cre"),
                    email = "christian.graul@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hasan BULUT <hasan.bulut@omu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hasan",
                    family = "BULUT",
                    role = c("aut", "cre"),
                    email = "hasan.bulut@omu.edu.tr")
as necessary.
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
insert_ref.html:256:1 (insert_ref.Rd:196): Warning: <h4> anchor "Rd-macro-insertNoCite" already defined
set_Rdpack_bibstyle.html:45:1 (set_Rdpack_bibstyle.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhirui",
                      family = "Hu",
                      role = "aut"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"))
as necessary.

The Description field contains
  Also see Hu and Tak (2020) <arXiv:2005.08049>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
doi2handle-defunct.html:48:1 (doi2handle-defunct.Rd:13): Warning: missing </ul> before </div>
dryad_fetch-defunct.html:46:1 (dryad_fetch-defunct.Rd:10): Warning: missing </ul> before </div>
dryad_metadata-defunct.html:46:1 (dryad_metadata-defunct.Rd:10): Warning: missing </ul> before </div>
dryad_package_dois-defunct.html:46:1 (dryad_package_dois-defunct.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dsdp-readsdpa.html:52:1 (dsdp-readsdpa.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helpers-process-tracing.R’ ‘process_tracing_estimator.Rd’
Maintainer: ‘Aaron J. Baraff <ajbaraff@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aaron", "J."),
                    family = "Baraff",
                    role = c("aut", "cre"),
                    email = "ajbaraff@uw.edu")
as necessary.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Kisung",
                      family = "You",
                      role = "aut"),
               person(given = c("Sujit", "K."),
                      family = "Ghosh",
                      role = "aut"),
               person(given = "Bingyue",
                      family = "Su",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Suh",
                      role = "aut"),
               person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"))
as necessary.
Found the following HTML validation problems:
as.tags.reactable.html:56:1 (as.tags.reactable.Rd:15): Warning: missing </ul> before </div>
knit_print.reactable.html:50:1 (knit_print.reactable.Rd:12): Warning: missing </ul> before </div>
widget_html.reactable.html:58:1 (widget_html.reactable.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
reactlog_write.html:58:1 (reactlog_write.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_lfs_grossflows.html:48:1 (check_lfs_grossflows.Rd:11): Warning: missing </ul> before </div>
extract_abs_sheets.html:63:1 (extract_abs_sheets.Rd:21): Warning: missing </ul> before </div>
fast_str_squish.html:46:1 (fast_str_squish.Rd:10): Warning: missing </ul> before </div>
tidy_abs_list.html:53:1 (tidy_abs_list.Rd:15): Warning: missing </ul> before </div>
tidy_awe.html:46:1 (tidy_awe.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhadip",
                    family = "Datta",
                    role = c("aut", "cre"),
                    email = "subhadipdatta007@gmail.com")
as necessary.
Maintainer: ‘Nicholas Cooper <njcooper@gmx.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Cooper",
                    role = c("aut", "cre"),
                    email = "njcooper@gmx.co.uk")
as necessary.
checkRd: (-1) reader-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:55: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘temp.txt’ ‘temp2.csv’ ‘temp3.rda’
Found the following HTML validation problems:
print.html:60:1 (print.Rd:21): Warning: missing </ul> before </div>
unzip_single_gt3x.html:82:1 (unzip_single_gt3x.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasper",
                    family = "Kristensen",
                    role = c("aut", "cre"),
                    email = "kaskr@dtu.dk")
as necessary.
Maintainer: ‘Clemens Druee <druee@uni-trier.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Clemens",
                      family = "Druee",
                      role = c("aut", "cre"),
                      email = "druee@uni-trier.de"),
               person(given = "Universitaet",
                      family = "Trier",
                      role = "aut"))
as necessary.
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
Maintainer: ‘Mark Ewing <b.mark@ewingsonline.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Ewing",
                    role = c("aut", "cre"),
                    email = "b.mark@ewingsonline.com")
as necessary.
Found the following HTML validation problems:
read_excel_noguess.html:52:1 (read_excel_noguess.Rd:13): Warning: missing </ul> before </div>
tables_from_seriesid.html:46:1 (tables_from_seriesid.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) ReAD.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
checkRd: (-1) em_hmm.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  melt_delim.Rd: tibble
  read_delim.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘readr/libs/readr.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
    ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
saveToExport.html:47:1 (saveToExport.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_docid.html:54:1 (add_docid.Rd:14): Warning: missing </ul> before </div>
as.character.readtext.html:52:1 (as.character.readtext.Rd:12): Warning: missing </ul> before </div>
cache_remote.html:77:1 (cache_remote.Rd:25): Warning: missing </ul> before </div>
get_temp.html:61:1 (get_temp.Rd:19): Warning: missing </ul> before </div>
impute_types.html:47:1 (impute_types.Rd:10): Warning: missing </ul> before </div>
print.readtext.html:59:1 (print.readtext.Rd:16): Warning: missing </ul> before </div>
sort_fields.html:58:1 (sort_fields.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
REML_Rm.html:153:1 (REML_Rm.Rd:68): Warning: missing </ul> before </div>
R_mstep2.html:141:1 (R_mstep2.Rd:62): Warning: missing </ul> before </div>
print.html:57:1 (print.Rd:20): Warning: missing </ul> before </div>
vp_cp.html:62:1 (vp_cp.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wesley",
                      family = "Graybill",
                      role = "aut"),
               person(given = "Mingli",
                      family = "Chen",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"),
               person(given = "Alfred",
                      family = "Galichon",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Wieland <thomas.wieland.geo@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.geo@googlemail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Automotive.Rd:29: Lost braces
    29 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). Own postprocessing.
       |                                                           ^
checkRd: (-1) Automotive.Rd:33: Lost braces
    33 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). 
       |                                                           ^
'library' or 'require' call not declared from: ‘deconvolveR’
Found the following HTML validation problems:
ThreshFDR.html:56:1 (ThreshFDR.Rd:14): Warning: missing </ul> before </div>
plot.medde.html:51:1 (plot.medde.Rd:12): Warning: missing </ul> before </div>
qmedde.html:51:1 (qmedde.Rd:12): Warning: missing </ul> before </div>
rmedde.html:54:1 (rmedde.Rd:14): Warning: missing </ul> before </div>
'library' or 'require' calls not declared from:
  ‘FNN’ ‘MASS’ ‘e1071’ ‘flexmix’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DateTime.Rd: ClassGroups
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_CD_local.R’ ‘gg_PIT_local.R’
Maintainer: ‘Louis Raimbault <Louis.Raimbault@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Louis",
                      family = "Raimbault",
                      role = c("aut", "cre"),
                      email = "louis.raimbault@icloud.com"),
               person(family = "A.Mokkadem",
                      role = "aut"),
               person(family = "M.Pelletier",
                      role = "aut"))
as necessary.

The Description field contains
  Raimbault (2020) <arXiv:2011.14195>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/LouisRaimbault/RecAssoRules-R
which should likely be
  https://github.com/LouisRaimbault/RecAssoRules-R/issues
instead.
Found the following HTML validation problems:
compute_vertical_inflow.html:52:1 (compute_vertical_inflow.Rd:13): Warning: missing </ul> before </div>
compute_vertical_inflow_cell.html:50:1 (compute_vertical_inflow_cell.Rd:12): Warning: missing </ul> before </div>
compute_water_budget.html:58:1 (compute_water_budget.Rd:16): Warning: missing </ul> before </div>
compute_water_budget_cell.html:50:1 (compute_water_budget_cell.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
Found the following HTML validation problems:
fixed.html:85:1 (fixed.Rd:48): Warning: missing </ul> before </div>
selections.html:213:1 (selections.Rd:167): Warning: missing </ul> before </div>
Maintainer: ‘Leonardo Dapporto <leondap@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leonardo",
                      family = "Dapporto",
                      role = c("aut", "cre"),
                      email = "leondap@gmail.com"),
               person(given = "Matteo",
                      family = "Ramazzotti",
                      role = "aut"),
               person(given = "Simone",
                      family = "Fattorini",
                      role = "aut"),
               person(given = "Roger",
                      family = "Vila",
                      role = "aut"),
               person(given = "Gerard",
                      family = "Talavera",
                      role = "aut"),
               person(given = c("Roger", "H.L."),
                      family = "Dennis",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
is.recmap.html:46:1 (is.recmap.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
example_der_fun.html:50:1 (example_der_fun.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) recombinator.Rd:32-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) recombinator.Rd:35-38: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Os",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Found the following HTML validation problems:
getMinimalTrain.html:94:1 (getMinimalTrain.Rd:69): Warning: <h3> anchor "_sec_note" already defined
resample.html:57:1 (resample.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Magdalena Chrapek <Magdalena.Chrapek@ujk.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Magdalena",
                    family = "Chrapek",
                    role = c("aut", "cre"),
                    email = "magdalena.chrapek@ujk.edu.pl")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:375:1 (inst/NEWS.Rd:155): Warning: missing </ul> before </div>
NEWS.html:71:1 (inst/NEWS.Rd:28): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:86:1 (inst/NEWS.Rd:36): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:100:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:117:1 (inst/NEWS.Rd:49): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:132:1 (inst/NEWS.Rd:57): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:149:1 (inst/NEWS.Rd:64): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:170:1 (inst/NEWS.Rd:74): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:202:1 (inst/NEWS.Rd:86): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:255:1 (inst/NEWS.Rd:106): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:273:1 (inst/NEWS.Rd:115): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:302:1 (inst/NEWS.Rd:126): Warning: <h4> anchor "MODIFICATIONS" already defined
NEWS.html:343:1 (inst/NEWS.Rd:142): Warning: <h4> anchor "BUG-FIXES" already defined
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "David",
                      family = "Cortes",
                      role = "aut"),
               person(given = "Chih-Jen",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yu-Chin",
                      family = "Juan",
                      role = "aut"),
               person(given = "Wei-Sheng",
                      family = "Chin",
                      role = "aut"),
               person(given = "Yong",
                      family = "Zhuang",
                      role = "aut"),
               person(given = "Bo-Wen",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Meng-Yuan",
                      family = "Yang",
                      role = "aut"),
               person(given = c("other", "contributors.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
checkRd: (-1) pseudo.geefit.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.geefit.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
dot-calculateCrossingPercentageCmplx.html:59:1 (dot-calculateCrossingPercentageCmplx.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_type.html:50:1 (as_type.Rd:12): Warning: missing </ul> before </div>
check_types.html:46:1 (check_types.Rd:10): Warning: missing </ul> before </div>
correct_constraints.html:46:1 (correct_constraints.Rd:10): Warning: missing </ul> before </div>
modelToVn.html:65:1 (modelToVn.Rd:23): Warning: missing </ul> before </div>
norm_type_ref.html:55:1 (norm_type_ref.Rd:15): Warning: missing </ul> before </div>
recover_RelDataModel.html:49:1 (recover_RelDataModel.Rd:13): Warning: missing </ul> before </div>
sub-.RelDataModel.html:61:1 (sub-.RelDataModel.Rd:18): Warning: missing </ul> before </div>
view_confrontation_report.html:51:1 (view_confrontation_report.Rd:13): Warning: missing </ul> before </div>
write_json_data_model.html:50:1 (write_json_data_model.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
show-method.html:72:1 (show-method.Rd:36): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Extraction.html:58:1 (Extraction.Rd:18): Warning: missing </ul> before </div>
as.character.response.html:52:1 (as.character.response.Rd:13): Warning: missing </ul> before </div>
checkbox_suffixes.html:53:1 (checkbox_suffixes.Rd:12): Warning: missing </ul> before </div>
exportDataQuality.html:59:1 (exportDataQuality.Rd:17): Warning: missing </ul> before </div>
fileRepositoryPath.html:59:1 (fileRepositoryPath.Rd:19): Warning: missing </ul> before </div>
writeDataForImport.html:47:1 (writeDataForImport.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
checkbox_names.html:58:1 (checkbox_names.Rd:16): Warning: missing </ul> before </div>
fill_data.html:54:1 (fill_data.Rd:14): Warning: missing </ul> before </div>
recalculate.html:60:1 (recalculate.Rd:16): Warning: missing </ul> before </div>
split_event.html:58:1 (split_event.Rd:16): Warning: missing </ul> before </div>
split_form.html:62:1 (split_form.Rd:18): Warning: missing </ul> before </div>
to_factor.html:54:1 (to_factor.Rd:14): Warning: missing </ul> before </div>
transform_checkboxes.html:60:1 (transform_checkboxes.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_labelled_xlsx_features.html:82:1 (add_labelled_xlsx_features.Rd:34): Warning: missing </ul> before </div>
bind_supertbl_metadata.html:47:1 (bind_supertbl_metadata.Rd:10): Warning: missing </ul> before </div>
check_equal_col_summaries.html:55:1 (check_equal_col_summaries.Rd:14): Warning: missing </ul> before </div>
check_extra_field_values.html:50:1 (check_extra_field_values.Rd:12): Warning: missing </ul> before </div>
check_field_is_logical.html:46:1 (check_field_is_logical.Rd:10): Warning: missing </ul> before </div>
check_fields_are_checkboxes.html:50:1 (check_fields_are_checkboxes.Rd:12): Warning: missing </ul> before </div>
check_fields_exist.html:54:1 (check_fields_exist.Rd:14): Warning: missing </ul> before </div>
check_metadata_fields_exist.html:57:1 (check_metadata_fields_exist.Rd:15): Warning: missing </ul> before </div>
parse_logical_cols.html:54:1 (parse_logical_cols.Rd:14): Warning: missing </ul> before </div>
supertbl_recode.html:55:1 (supertbl_recode.Rd:14): Warning: missing </ul> before </div>
update_dag_cols.html:63:1 (update_dag_cols.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘redSolve.R’
Maintainer: ‘Ivan Rivera <ivan.s.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Rivera",
                    role = c("aut", "cre"),
                    email = "ivan.s.rivera@gmail.com")
as necessary.
Maintainer: ‘Siddhartha Kundu <siddhartha_kundu@aiims.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siddhartha",
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "2021:ManuscriptUnderPreparation")
as necessary.
Maintainer: ‘Juan A. Ferrer-Bonsoms <jafhernandez@tecnun.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "A."),
                      family = "Ferrer-Bonsoms",
                      role = c("aut", "cre"),
                      email = "jafhernandez@tecnun.es"),
               person(given = "Laura",
                      family = "Jareno",
                      role = "aut"),
               person(given = "Angel",
                      family = "Rubio",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot.redist_plans.html:59:1 (plot.redist_plans.Rd:16): Warning: missing </ul> before </div>
File ‘redland/libs/redland.so’:
  Found non-API call to R: ‘SET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
freeQueryResults.html:50:1 (freeQueryResults.Rd:13): Warning: missing </ul> before </div>
length-SWIGArray-method.html:47:1 (length-SWIGArray-method.Rd:9): Warning: missing </ul> before </div>
roclet_output.roclet_mergeNamespace.html:61:1 (roclet_output.roclet_mergeNamespace.Rd:16): Warning: missing </ul> before </div>
setNameSpace.html:61:1 (setNameSpace.Rd:19): Warning: missing </ul> before </div>
setQueryResultsLimit.html:53:1 (setQueryResultsLimit.Rd:16): Warning: missing </ul> before </div>
sub-ExternalReference-method.html:63:1 (sub-ExternalReference-method.Rd:17): Warning: missing </ul> before </div>
subset-ExternalReference-method.html:63:1 (subset-ExternalReference-method.Rd:17): Warning: missing </ul> before </div>
File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following HTML validation problems:
parse_redis_url.html:46:1 (parse_redis_url.Rd:10): Warning: missing </ul> before </div>
redis_api.html:57:1 (redis_api.Rd:17): Warning: missing </ul> before </div>
redis_multi.html:53:1 (redis_multi.Rd:12): Warning: missing </ul> before </div>
redis_scripts.html:59:1 (redis_scripts.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Finnegan <dan.finnegan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Finnegan",
                    role = c("aut", "cre"),
                    email = "dan.finnegan@gmail.com")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Found the following HTML validation problems:
expandGrpVar.html:48:1 (expandGrpVar.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) make_refreshable.Rd:13: Lost braces
    13 | not that quotes need to be escaped (code{\"}).}
       |                                         ^
Maintainer: ‘"David Hugh-Jones" <davidhughjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "\"David",
                    family = "Hugh-Jones\"",
                    role = c("aut", "cre"),
                    email = "davidhughjones@gmail.com")
as necessary.
Found the following HTML validation problems:
pffr.check.html:94:1 (pffr.check.Rd:40): Warning: missing </ul> before </div>
qq.pffr.html:93:1 (qq.pffr.Rd:41): Warning: missing </ul> before </div>
Found the following HTML validation problems:
make_linCom.html:56:1 (make_linCom.Rd:15): Warning: missing </ul> before </div>
make_muPC.html:55:1 (make_muPC.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘William Belzak <wbelzak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Belzak",
                    role = c("aut", "cre"),
                    email = "wbelzak@gmail.com")
as necessary.
Maintainer: ‘Daniel Crouch <djmcrouch@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J.M."),
                      family = "Crouch",
                      role = "aut"),
               person(given = c("Graham", "H.M.", "Goddard", "&", "Cathryn", "M."),
                      family = "Lewis",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Crouch",
                      role = "cre",
                      email = "djmcrouch@gmail.com"))
as necessary.
Found the following files/directories:
  ‘EnvironmentalA.txt’ ‘EnvironmentalB.txt’ ‘Example.txt’
  ‘Example_Predictions.txt’ ‘Example_RRDist.txt’
  ‘Example_RRDistCol.TIF’ ‘Example_RRDistGrey.TIF’ ‘GeneticA.txt’
  ‘GeneticB.txt’ ‘Inds.txt’
Maintainer: ‘Billy Buchanan <Billy.Buchanan@fayette.kyschools.us>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Billy",
                    family = "Buchanan",
                    role = c("aut", "cre"),
                    email = "billy.buchanan@fayette.kyschools.us")
as necessary.
Maintainer: ‘Daniel Antal <daniel.antal@ceemid.eu>’

The BugReports field in DESCRIPTION has
  https://github.com/rOpenGov/regions
which should likely be
  https://github.com/rOpenGov/regions/issues
instead.
checkRd: (-1) impute_down_nuts.Rd:21: Lost braces
    21 | NUTS typologies, defaults to code{"geo_var".}}
       |                                  ^
checkRd: (-1) validate_data_frame.Rd:19: Lost braces
    19 | NUTS typologies, defaults to code{"geo_var".}}
       |                                  ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/registr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gfpca_twoStep.Rd: gamm4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
crossprods_irregular.html:49:1 (crossprods_irregular.Rd:11): Warning: missing </ul> before </div>
crossprods_regular.html:49:1 (crossprods_regular.Rd:11): Warning: missing </ul> before </div>
initial_params.html:59:1 (initial_params.Rd:15): Warning: missing </ul> before </div>
mean_sim.html:46:1 (mean_sim.Rd:10): Warning: missing </ul> before </div>
psi1_sim.html:46:1 (psi1_sim.Rd:10): Warning: missing </ul> before </div>
psi2_sim.html:46:1 (psi2_sim.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘David Meyer <David.Meyer@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "david.meyer@r-project.org")
as necessary.
Found the following HTML validation problems:
REGModel.html:154:1 (REGModel.Rd:157): Warning: <h5> anchor "Usage" already defined
REGModel.html:160:1 (REGModel.Rd:161): Warning: <h5> anchor "Arguments" already defined
REGModel.html:185:1 (REGModel.Rd:176): Warning: <h5> anchor "Usage" already defined
REGModel.html:191:1 (REGModel.Rd:180): Warning: <h5> anchor "Arguments" already defined
REGModel.html:219:1 (REGModel.Rd:198): Warning: <h5> anchor "Usage" already defined
REGModel.html:225:1 (REGModel.Rd:202): Warning: <h5> anchor "Arguments" already defined
REGModel.html:248:1 (REGModel.Rd:215): Warning: <h5> anchor "Usage" already defined
REGModel.html:254:1 (REGModel.Rd:219): Warning: <h5> anchor "Arguments" already defined
REGModel.html:277:1 (REGModel.Rd:232): Warning: <h5> anchor "Usage" already defined
REGModel.html:283:1 (REGModel.Rd:236): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:136:1 (REGModelList.Rd:96): Warning: <h5> anchor "Usage" already defined
REGModelList.html:149:1 (REGModelList.Rd:107): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:173:1 (REGModelList.Rd:125): Warning: <h5> anchor "Returns" already defined
REGModelList.html:190:1 (REGModelList.Rd:134): Warning: <h5> anchor "Usage" already defined
REGModelList.html:202:1 (REGModelList.Rd:144): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:234:1 (REGModelList.Rd:166): Warning: <h5> anchor "Usage" already defined
REGModelList.html:240:1 (REGModelList.Rd:170): Warning: <h5> anchor "Arguments" already defined
REGModelList.html:263:1 (REGModelList.Rd:183): Warning: <h5> anchor "Usage" already defined
REGModelList.html:269:1 (REGModelList.Rd:187): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
Replacer.html:130:1 (Replacer.Rd:98): Warning: <h5> anchor "Usage" already defined
Replacer.html:136:1 (Replacer.Rd:102): Warning: <h5> anchor "Arguments" already defined
Replacer.html:151:1 (Replacer.Rd:111): Warning: <h5> anchor "Returns" already defined
Replacer.html:158:1 (Replacer.Rd:114): Warning: <h5> anchor "Examples" already defined
Replacer.html:181:1 (Replacer.Rd:132): Warning: <h5> anchor "Usage" already defined
Replacer.html:187:1 (Replacer.Rd:136): Warning: <h5> anchor "Arguments" already defined
Replacer.html:204:1 (Replacer.Rd:147): Warning: <h5> anchor "Returns" already defined
Replacer.html:211:1 (Replacer.Rd:150): Warning: <h5> anchor "Examples" already defined
Replacer.html:231:1 (Replacer.Rd:165): Warning: <h5> anchor "Usage" already defined
Replacer.html:237:1 (Replacer.Rd:169): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
checkRd: (-1) fbase1.binomial.Rd:32: Lost braces; missing escapes or markup?
    32 | In all base log-likelihood functions, we have dropped any additive terms that are independent of the distribution parameter, e.g. constant terms or those terms that are dependent on the response variable only. This is done for computational efficiency. Therefore, these functions cannot be used to obtain the absolute values of log-likelihood functions but only in the context of optimization and/or sampling. Users can write thin wrappers around these functions to add the constant terms to the function value. (Derivatives do not need correction. For binomial family, all factorial terms are ignored since they only depend on \code{n} and {y}.)
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
Found the following HTML validation problems:
run_app.html:46:1 (run_app.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add.n.r.html:46:1 (add.n.r.Rd:10): Warning: missing </ul> before </div>
add.pr.html:54:1 (add.pr.Rd:14): Warning: missing </ul> before </div>
add.sig.html:50:1 (add.sig.Rd:12): Warning: missing </ul> before </div>
scale_01.html:46:1 (scale_01.Rd:10): Warning: missing </ul> before </div>
test_coef_equality.html:65:1 (test_coef_equality.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Pawel Teisseyre <teisseyrep@ipipan.waw.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pawel",
                      family = "Teisseyre",
                      role = c("aut", "cre"),
                      email = "teisseyrep@ipipan.waw.pl"),
               person(given = c("Robert", "A."),
                      family = "Klopotek",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
rcpp_RAMmult.html:78:1 (rcpp_RAMmult.Rd:26): Warning: missing </ul> before </div>
rcpp_fit_fun.html:108:1 (rcpp_fit_fun.Rd:48): Warning: missing </ul> before </div>
rcpp_grad_ram.html:103:1 (rcpp_grad_ram.Rd:45): Warning: missing </ul> before </div>
rcpp_quasi_calc.html:58:1 (rcpp_quasi_calc.Rd:16): Warning: missing </ul> before </div>
stabsel_par.html:138:1 (stabsel_par.Rd:66): Warning: missing </ul> before </div>
Maintainer: ‘Yanming Di<diy@stat.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yanming",
                    family = "Di",
                    role = c("aut", "cre"),
                    email = "diy@stat.oregonstate.edu")
as necessary.
Maintainer: ‘Mathieu Gautier <mathieu.gautier@supagro.inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mathieu",
                      family = "Gautier",
                      role = c("aut", "cre"),
                      email = "mathieu.gautier@supagro.inra.fr"),
               person(given = "Alexander",
                      family = "Klassmann",
                      role = "aut"),
               person(given = "Renaud",
                      family = "Vitalis",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) plot.ehh.Rd:27: Lost braces
    27 | \item{type}{plot type (see code{\link[graphics]{plot.default}} and \code{\link[graphics]{matplot}}). 
       |                                ^
checkRd: (-1) plot.ehhs.Rd:27: Lost braces
    27 | \item{type}{plot type (see code{\link[graphics]{plot.default}}.
       |                                ^
File ‘rehh/libs/rehh.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:116:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:134:1 (inst/NEWS.Rd:79): Warning: <h4> anchor "Changes-in-+E2+80+98C+2B+2B+E2+80+99-code+3A" already defined
NEWS.html:145:1 (inst/NEWS.Rd:85): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:160:1 (inst/NEWS.Rd:95): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:174:1 (inst/NEWS.Rd:102): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:189:1 (inst/NEWS.Rd:112): Warning: <h4> anchor "Changes-in-documentation+3A" already defined
NEWS.html:200:1 (inst/NEWS.Rd:117): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:215:1 (inst/NEWS.Rd:127): Warning: <h4> anchor "Changes-in-+E2+80+98C+2B+2B+E2+80+99-code+3A" already defined
NEWS.html:226:1 (inst/NEWS.Rd:133): Warning: <h4> anchor "Changes-in-documentation+3A" already defined
NEWS.html:237:1 (inst/NEWS.Rd:139): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:258:1 (inst/NEWS.Rd:152): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:273:1 (inst/NEWS.Rd:160): Warning: <h4> anchor "Changes-in-documentation+3A" already defined
NEWS.html:290:1 (inst/NEWS.Rd:168): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
Maintainer: ‘Calli Gross <calli@calligross.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Calli",
                    family = "Gross",
                    role = c("aut", "cre"),
                    email = "calli@calligross.de")
as necessary.
Maintainer: ‘Arnaud Buzzi <arnaud.buzzi@sia-partners.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Buzzi",
                    role = c("aut", "cre"),
                    email = "arnaud.buzzi@sia-partners.com")
as necessary.
Maintainer: ‘Fabien Laporte <fabien.laporte@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fabien",
                      family = "Laporte",
                      role = c("aut", "cre"),
                      email = "fabien.laporte@inra.fr"),
               person(given = "Tristan",
                      family = "Mary-Huard",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark S. Handcock <handcock@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mark", "S."),
                    family = "Handcock",
                    role = c("aut", "cre"),
                    email = "handcock@stat.ucla.edu")
as necessary.
Maintainer: ‘Miguel Rodríguez Asensio <miguel.rodriguezasensio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miguel", "Rodríguez"),
                    family = "Asensio",
                    role = c("aut", "cre"),
                    email = "miguel.rodriguezasensio@gmail.com")
as necessary.
checkRd: (-1) polarizacion_Dalton.Rd:26: Lost braces; missing escapes or markup?
    26 | {Pd = sqrt(sum(p_j*(x_j-mean(x_p))/4.5)^2)}
       | ^
checkRd: (-1) reparto_div.Rd:37: Lost braces; missing escapes or markup?
    37 | The set of divisors is formed by the odd numbers, that is {1,3,..,2n+1}.
       |                                                           ^
Maintainer: ‘Werner A. Stahel <stahel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Werner", "A."),
                    family = "Stahel",
                    role = c("aut", "cre"),
                    email = "stahel@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Carter T. Butts <buttsc@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carter", "T."),
                    family = "Butts",
                    role = c("aut", "cre"),
                    email = "buttsc@uci.edu")
as necessary.
checkRd: (-1) rem.dyad.Rd:121: Lost braces; missing escapes or markup?
   121 | \item Single or multiple covariates, time varying: For \code{CovSnd}, \code{CovRec}, or \code{CovInt}, an \code{m} by \code{p} by {n} array whose respective dimensions index time (i.e., event number), covariate, and actor.  For \code{CovEvent}, a \code{m} by \code{p} by \code{n} by \code{n} array, whose dimensions are analogous to the previous case.
       |                                                                                                                                   ^
Maintainer: ‘Kenneth Tay <kjytay@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Tay",
                      role = c("aut", "cre"),
                      email = "kjytay@stanford.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.

The Description field contains
  (2019) <arXiv:1912.01808> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexander I. Jordan <alexander.jordan@h-its.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michael Hernandez <michael@hernandez.ai>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Hernandez",
                      role = c("aut", "cre"),
                      email = "micahel@hernandez.ai"),
               person(given = "Yuri",
                      family = "Balasanov",
                      role = "aut"))
as necessary.
Maintainer: ‘David Firth <d.firth@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Firth", "with", "contributions", "from", "Heather"),
                      family = "Turner",
                      role = "aut"),
               person(given = "John",
                      family = "Fox",
                      role = "aut"),
               person(given = "David",
                      family = "Firth",
                      role = "cre",
                      email = "d.firth@warwick.ac.uk"))
as necessary.
Maintainer: ‘James M. Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("James", "M."),
                    family = "Curran",
                    role = c("aut", "cre"),
                    email = "j.curran@auckland.ac.nz")
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Tony Wang <xwang@imedacs.com>’

The Description field contains
  <arXiv:2203.02771>. Methods for missing-not-at-random include
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
commParams.html:126:1 (commParams.Rd:61): Warning: missing </ul> before </div>
get_class.html:64:1 (get_class.Rd:19): Warning: missing </ul> before </div>
prep_MCMC.html:89:1 (prep_MCMC.Rd:33): Warning: missing </ul> before </div>
updateMI.html:69:1 (updateMI.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
test_covar_fun.html:56:1 (test_covar_fun.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
EotCycle.html:107:1 (EotCycle.Rd:51): Warning: missing </ul> before </div>
Found the following HTML validation problems:
github_remote.html:89:1 (github_remote.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_dep_version.html:50:1 (get_dep_version.Rd:12): Warning: missing </ul> before </div>
install_if_not_installed.html:46:1 (install_if_not_installed.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Laurence Brandenberger <lbrandenberger@ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Laurence",
                    family = "Brandenberger",
                    role = c("aut", "cre"),
                    email = "lbrandenberger@ethz.ch")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
aomstats.html:165:1 (aomstats.Rd:102): Warning: <h3> anchor "attr_actors" already defined
aomstats.html:186:1 (aomstats.Rd:122): Warning: <h3> anchor "attr_dyads" already defined
remstats.html:217:1 (remstats.Rd:146): Warning: <h3> anchor "attr_actors" already defined
remstats.html:238:1 (remstats.Rd:166): Warning: <h3> anchor "attr_dyads" already defined
tomstats.html:182:1 (tomstats.Rd:116): Warning: <h3> anchor "attr_actors" already defined
tomstats.html:203:1 (tomstats.Rd:136): Warning: <h3> anchor "attr_dyads" already defined
Maintainer: ‘Miguel F. Acevedo <acevedo@unt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miguel", "F."),
                    family = "Acevedo",
                    role = c("aut", "cre"),
                    email = "acevedo@unt.edu")
as necessary.
Maintainer: ‘Minji Lee <minjilee101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minji",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "minjilee101@gmail.com"),
               person(given = "Zhihua",
                      family = "Su",
                      role = "aut"))
as necessary.
Maintainer: ‘Jordan Hayes <jhayes@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jordan",
                    family = "Hayes",
                    role = c("aut", "cre"),
                    email = "jhayes@ucr.edu")
as necessary.
Found the following HTML validation problems:
remote.html:49:1 (remote.Rd:12): Warning: missing </ul> before </div>
vendor.html:72:1 (vendor.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Juan Carlos Aledo <caledo@uma.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Carlos"),
                    family = "Aledo",
                    role = c("aut", "cre"),
                    email = "caledo@uma.es")
as necessary.
Maintainer: ‘Gourav Kumar Vani <kumaragri.vani1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gourav", "Kumar"),
                      family = "Vani",
                      role = c("aut", "cre"),
                      email = "kumaragri.vani1@gmail.com"),
               person(given = c("Dr.", "Vivek"),
                      family = "Badhe",
                      role = "aut",
                      email = "vivekbadhe.jbp@gmail.com"))
as necessary.
Found the following HTML validation problems:
all_checklists.html:50:1 (all_checklists.Rd:12): Warning: missing </ul> before </div>
cards_info.html:46:1 (cards_info.Rd:10): Warning: missing </ul> before </div>
check_new_tasks.html:50:1 (check_new_tasks.Rd:12): Warning: missing </ul> before </div>
compare_checklists.html:50:1 (compare_checklists.Rd:12): Warning: missing </ul> before </div>
get_board_id.html:46:1 (get_board_id.Rd:10): Warning: missing </ul> before </div>
get_checklist.html:50:1 (get_checklist.Rd:12): Warning: missing </ul> before </div>
set_key_token.html:56:1 (set_key_token.Rd:14): Warning: missing </ul> before </div>
trello_updates.html:58:1 (trello_updates.Rd:16): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) twosidedPValuestobins.Rd:84: Lost braces; missing escapes or markup?
    84 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
checkRd: (-1) ztobins.Rd:90: Lost braces; missing escapes or markup?
    90 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
Found the following HTML validation problems:
Evaluate.html:53:1 (Evaluate.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) method.A.Rd:200-205: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:206-211: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:231-236: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:237-242: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:201-206: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:207-212: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:232-237: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:238-243: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.
Maintainer: ‘Dzmitry G Batrakou <d.batrakou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dzmitry", "G"),
                    family = "Batrakou",
                    role = c("aut", "cre"),
                    email = "d.batrakou@gmail.com")
as necessary.
Maintainer: ‘David Hervas Marin <ddhervas@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "Hervas"),
                    family = "Marin",
                    role = c("aut", "cre"),
                    email = "ddhervas@yahoo.es")
as necessary.
Maintainer: ‘Nick Parsons <nick.parsons@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Parsons",
                    role = c("aut", "cre"),
                    email = "nick.parsons@warwick.ac.uk")
as necessary.
Maintainer: ‘Francesco Napolitano <franapoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francesco",
                    family = "Napolitano",
                    role = c("aut", "cre"),
                    email = "franapoli@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) repo_build.Rd:44-47: Lost braces
    44 | ## chunk "item 1" {
       |                   ^
checkRd: (-1) repo_dependencies.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) repo_dependencies.Rd:49-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) repo_dependencies.Rd:51-53: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
addspace.html:46:1 (addspace.Rd:10): Warning: missing </ul> before </div>
cap.html:46:1 (cap.Rd:10): Warning: missing </ul> before </div>
formatp.html:47:1 (formatp.Rd:10): Warning: missing </ul> before </div>
ggkmcif2Parameters.html:312:1 (ggkmcif2Parameters.Rd:184): Warning: missing </ul> before </div>
hbld.html:46:1 (hbld.Rd:10): Warning: missing </ul> before </div>
lbld.html:46:1 (lbld.Rd:10): Warning: missing </ul> before </div>
lpvalue.html:50:1 (lpvalue.Rd:12): Warning: missing </ul> before </div>
niceNum.html:50:1 (niceNum.Rd:12): Warning: missing </ul> before </div>
nicename.html:52:1 (nicename.Rd:13): Warning: missing </ul> before </div>
psthr.html:50:1 (psthr.Rd:12): Warning: missing </ul> before </div>
pstprn.html:46:1 (pstprn.Rd:10): Warning: missing </ul> before </div>
pvalue.html:51:1 (pvalue.Rd:12): Warning: missing </ul> before </div>
rmds.html:46:1 (rmds.Rd:10): Warning: missing </ul> before </div>
sanitizestr.html:48:1 (sanitizestr.Rd:10): Warning: missing </ul> before </div>
xvar_function.default.html:46:1 (xvar_function.default.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Fischer <daniel.fischer@luke.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Fischer",
                      role = c("aut", "cre"),
                      email = "daniel.fischer@luke.fi"),
               person(given = "Alain",
                      family = "Berro",
                      role = "aut"),
               person(given = "Klaus",
                      family = "Nordhausen",
                      role = "aut"),
               person(given = "Anne",
                      family = "Ruiz-Gazen",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dist_col_type.html:67:1 (dist_col_type.Rd:22): Warning: missing </ul> before </div>
within_category_compare_cpp.html:78:1 (within_category_compare_cpp.Rd:31): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Analyze.html:54:1 (Analyze.Rd:14): Warning: missing </ul> before </div>
Cook.html:54:1 (Cook.Rd:14): Warning: missing </ul> before </div>
Gather.html:50:1 (Gather.Rd:12): Warning: missing </ul> before </div>
OutputFile.html:46:1 (OutputFile.Rd:10): Warning: missing </ul> before </div>
Present.html:58:1 (Present.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
reprex_addin.html:98:1 (reprex_addin.Rd:38): Warning: missing </ul> before </div>
reprex_venue.html:53:1 (reprex_venue.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Cache.html:325:1 (Cache.Rd:231): Warning: <h3> anchor "quick" already defined
checkRelative.html:73:1 (checkRelative.Rd:28): Warning: missing </ul> before </div>
cloudDownload.html:95:1 (cloudDownload.Rd:45): Warning: missing </ul> before </div>
cloudUploadFromCache.html:91:1 (cloudUploadFromCache.Rd:43): Warning: missing </ul> before </div>
dot-removeCacheAtts.html:46:1 (dot-removeCacheAtts.Rd:10): Warning: missing </ul> before </div>
downloadRemote.html:162:1 (downloadRemote.Rd:98): Warning: missing </ul> before </div>
guessAtTarget.html:57:1 (guessAtTarget.Rd:20): Warning: missing </ul> before </div>
purge.html:113:1 (purge.Rd:65): Warning: missing </ul> before </div>
remapFilenames.html:59:1 (remapFilenames.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
isReproducible.html:68:1 (isReproducible.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
repr_-times-.data.table.html:57:1 (repr_-times-.data.table.Rd:19): Warning: missing </ul> before </div>
repr_-times-.factor.html:57:1 (repr_-times-.factor.Rd:19): Warning: missing </ul> before </div>
repr_-times-.function.html:65:1 (repr_-times-.function.Rd:23): Warning: missing </ul> before </div>
repr_-times-.help_files_with_topic.html:57:1 (repr_-times-.help_files_with_topic.Rd:19): Warning: missing </ul> before </div>
repr_-times-.list.html:57:1 (repr_-times-.list.Rd:19): Warning: missing </ul> before </div>
repr_-times-.vector.html:106:1 (repr_-times-.vector.Rd:66): Warning: missing </ul> before </div>
repr_geojson.-times.html:102:1 (repr_geojson.-times.Rd:63): Warning: missing </ul> before </div>
repr_plotly1.-times.html:54:1 (repr_plotly1.-times.Rd:16): Warning: missing </ul> before </div>
repr_vega-times.html:51:1 (repr_vega-times.Rd:13): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate_impact.R’ ‘plot_repsd.R’ ‘repsd_pval.R’
Maintainer: ‘Yupeng He <yupeng.he.bioinfo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yupeng",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "yupeng.he.bioinfo@gmail.com")
as necessary.
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Require2.R’ ‘helpers.R’ ‘pak.R’ ‘pkgDep3.R’
Found the following HTML validation problems:
availablePackagesOverride.html:84:1 (availablePackagesOverride.Rd:38): Warning: missing </ul> before </div>
availableVersionOK.html:46:1 (availableVersionOK.Rd:10): Warning: missing </ul> before </div>
checkLibPaths.html:66:1 (checkLibPaths.Rd:24): Warning: missing </ul> before </div>
chooseCRANmirror2.html:46:1 (chooseCRANmirror2.Rd:10): Warning: missing </ul> before </div>
clearRequire.html:86:1 (clearRequire.Rd:43): Warning: missing </ul> before </div>
dealWithMissingLibPaths.html:71:1 (dealWithMissingLibPaths.Rd:31): Warning: missing </ul> before </div>
doLibPaths.html:63:1 (doLibPaths.Rd:25): Warning: missing </ul> before </div>
dot-installed.pkgs.html:99:1 (dot-installed.pkgs.Rd:49): Warning: missing </ul> before </div>
envPkgCreate.html:47:1 (envPkgCreate.Rd:11): Warning: missing </ul> before </div>
getCRANrepos.html:53:1 (getCRANrepos.Rd:12): Warning: missing </ul> before </div>
linkOrCopy.html:55:1 (linkOrCopy.Rd:16): Warning: missing </ul> before </div>
rmBase.html:52:1 (rmBase.Rd:14): Warning: missing </ul> before </div>
setLinuxBinaryRepo.html:56:1 (setLinuxBinaryRepo.Rd:15): Warning: missing </ul> before </div>
setup.html:94:1 (setup.Rd:44): Warning: missing </ul> before </div>
Found the following HTML validation problems:
disk.html:54:1 (disk.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
residuals.reReg.html:72:1 (residuals.reReg.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) NCBirths2004.Rd:16: Lost braces
    16 |     \item{\code{Smoker}}{Mother a smoker? code{No}, \code{Yes}}
       |                                               ^
Maintainer: ‘Tim Hesterberg <timhesterberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Hesterberg",
                    role = c("aut", "cre"),
                    email = "timhesterberg@gmail.com")
as necessary.
checkRd: (-1) ExpandProbs.Rd:35: Lost braces; missing escapes or markup?
    35 |      {z_probs2 sqrt((n-1)/n) = t_probs,n-1}
       |      ^
Found the following HTML validation problems:
diss_to_neighbors.html:93:1 (diss_to_neighbors.Rd:45): Warning: missing </ul> before </div>
format_xr_xu_indices.html:46:1 (format_xr_xu_indices.Rd:10): Warning: missing </ul> before </div>
ith_subsets_ortho_diss.html:62:1 (ith_subsets_ortho_diss.Rd:18): Warning: missing </ul> before </div>
local_ortho_diss.html:86:1 (local_ortho_diss.Rd:36): Warning: missing </ul> before </div>
pkg_info.html:46:1 (pkg_info.Rd:10): Warning: missing </ul> before </div>
sub-.local_ortho_diss.html:63:1 (sub-.local_ortho_diss.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Sean Turner <swd.turner@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) cast.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) cast.Rd:46: Escaped LaTeX specials: \_
File ‘reshape2/libs/reshape2.so’:
  Found non-API calls to R: ‘OBJECT’, ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
add_margins.html:57:1 (add_margins.Rd:16): Warning: missing </ul> before </div>
guess_value.html:55:1 (guess_value.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Konstantin Hopf <konstantin.hopf@uni-bamberg.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘to_df.R’
Found the following HTML validation problems:
print.ResIN.html:51:1 (print.ResIN.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) resistance.Rd:52: Lost braces
    52 |     \item B. Bollob\'{a}s, 1998.  \emph{Modern Graph Theory}.  Springer.
       |                      ^
Maintainer: ‘Maeve Upton <uptonmaeve010@gmail.com>’

The Description field contains
  et al 2023) <arXiv:2301.09556>, spatio-temporal splines (Upton et al
  2023) <arXiv:2301.09556> and generalised additive models (Upton et al
  2023) <arXiv:2301.09556>.  This package facilitates data loading, model
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yannick Marcon <yannick.marcon@obiba.org>’

The BugReports field in DESCRIPTION has
  https://github.com/obiba/resourcer
which should likely be
  https://github.com/obiba/resourcer/issues
instead.
Found the following HTML validation problems:
convert_MR_print.html:62:1 (convert_MR_print.Rd:18): Warning: missing </ul> before </div>
flow_unit_parse.html:50:1 (flow_unit_parse.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ben Waxer <bwaxer@auriq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Waxer",
                    role = c("aut", "cre"),
                    email = "bwaxer@auriq.com")
as necessary.

The Description field contains
  http://www.auriq.com/documentation/source/install/index.html.
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
print.status.html:52:1 (print.status.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Dmitry Selivanov <selivanov.dmitriy@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#RestRserve_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_result.Rd’ ‘bind.R’ ‘bind.Rd’ ‘result.R’ ‘result.Rd’
Found the following HTML validation problems:
resumer.html:101:1 (resumer.Rd:45): Warning: missing </ul> before </div>
Maintainer: ‘Miron B. Kursa <M.Kursa@icm.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miron", "B."),
                    family = "Kursa",
                    role = c("aut", "cre"),
                    email = "m.kursa@icm.edu.pl")
as necessary.
Found the following HTML validation problems:
close.RethinkDB_connection.html:51:1 (close.RethinkDB_connection.Rd:12): Warning: missing </ul> before </div>
close.RethinkDB_cursor.html:52:1 (close.RethinkDB_cursor.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
eng_python.html:154:1 (eng_python.Rd:81): Warning: missing </ul> before </div>
miniconda-params.html:42:1 (miniconda-params.Rd:9): Warning: missing </ul> before </div>
py_config_error_message.html:46:1 (py_config_error_message.Rd:10): Warning: missing </ul> before </div>
py_del_attr.html:50:1 (py_del_attr.Rd:12): Warning: missing </ul> before </div>
py_help.html:46:1 (py_help.Rd:10): Warning: missing </ul> before </div>
py_require.html:241:1 (py_require.Rd:164): Warning: missing </ul> before </div>
py_set_attr.html:54:1 (py_set_attr.Rd:14): Warning: missing </ul> before </div>
py_to_r_wrapper.html:48:1 (py_to_r_wrapper.Rd:10): Warning: missing </ul> before </div>
register_class_filter.html:47:1 (register_class_filter.Rd:11): Warning: missing </ul> before </div>
register_help_topics.html:50:1 (register_help_topics.Rd:12): Warning: missing </ul> before </div>
with-as-operator.html:50:1 (with-as-operator.Rd:13): Warning: missing </ul> before </div>
with.python.builtin.object.html:64:1 (with.python.builtin.object.Rd:17): Warning: missing </ul> before </div>
checkRd: (-1) harmonize_values.Rd:44: Lost braces; missing escapes or markup?
    44 | \item{perl}{Use perl-like regex? Defaults to {FALSE}.}
       |                                              ^
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Koohafkan",
                    role = c("aut", "cre"),
                    email = "michael.koohafkan@gmail.com")
as necessary.
Maintainer: ‘Julien Boelaert <jubo.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Boelaert",
                    role = c("aut", "cre"),
                    email = "jubo.stats@gmail.com")
as necessary.
checkRd: (-1) cpUpper.Rd:39: Lost braces
    39 | \code{"fastfloyd"}{ (default) uses an iterative variant of the Floyd-Warshall algorithm, in which the check of consistency of the current observation with a given cluster is done in a single step of the Floyd-Warshall algorithm. Much faster than \code{"floyd"}.}
       |                   ^
checkRd: (-1) cpUpper.Rd:41: Lost braces
    41 | \code{"floyd"}{ uses the algorithm described in Crawford and Pendakur (2013): at each step the complete Floyd-Warshall algorithm is run to check whether each cluster can accomodate the current observation.}
       |               ^
checkRd: (-1) rec.Rd:23: Escaped LaTeX specials: \$
Found the following HTML validation problems:
extract_refs.html:46:1 (extract_refs.Rd:10): Warning: missing </ul> before </div>
extract_sections.html:50:1 (extract_sections.Rd:12): Warning: missing </ul> before </div>
read_docx.html:46:1 (read_docx.Rd:10): Warning: missing </ul> before </div>
read_md.html:46:1 (read_md.Rd:10): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:297:1 (inst/NEWS.Rd:139): Warning: missing </ul> before </div>
NEWS.html:67:1 (inst/NEWS.Rd:31): Warning: <h4> anchor "Changed" already defined
NEWS.html:85:1 (inst/NEWS.Rd:40): Warning: <h4> anchor "Added" already defined
NEWS.html:100:1 (inst/NEWS.Rd:47): Warning: <h4> anchor "Changed" already defined
NEWS.html:125:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "Changed" already defined
NEWS.html:142:1 (inst/NEWS.Rd:66): Warning: <h4> anchor "Added" already defined
NEWS.html:157:1 (inst/NEWS.Rd:74): Warning: <h4> anchor "Changed" already defined
NEWS.html:186:1 (inst/NEWS.Rd:88): Warning: <h4> anchor "Changed" already defined
NEWS.html:207:1 (inst/NEWS.Rd:98): Warning: <h4> anchor "Fixed" already defined
NEWS.html:222:1 (inst/NEWS.Rd:106): Warning: <h4> anchor "Changed" already defined
NEWS.html:239:1 (inst/NEWS.Rd:113): Warning: <h4> anchor "Added" already defined
NEWS.html:253:1 (inst/NEWS.Rd:119): Warning: <h4> anchor "Fixed" already defined
NEWS.html:268:1 (inst/NEWS.Rd:127): Warning: <h4> anchor "Fixed" already defined
NEWS.html:283:1 (inst/NEWS.Rd:135): Warning: <h4> anchor "Added" already defined
checkRd: (-1) saveRev.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{use_wd}{logical - If TRUE, the history will be prepended by setwd({'users current working directory'}). This function will set the script's working directory to
       |                                                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_an_exercise.Rd’ ‘define_exercises.Rd’
    ‘define_exercises_from_csv.Rd’ ‘define_exercises_from_excel.Rd’
'::' or ':::' import not declared from: ‘Matrix’
'library' or 'require' call not declared from: ‘Matrix’
Found the following HTML validation problems:
register_shortcuts.html:48:1 (register_shortcuts.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Pablo Barbera <pbarbera@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Barbera",
                      role = c("aut", "cre"),
                      email = "pbarbera@usc.edu"),
               person(given = "Michael",
                      family = "Piccirilli",
                      role = "aut",
                      email = "mrp2181@columbia.edu"),
               person(given = "Andrew",
                      family = "Geisler",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
callAPI.html:57:1 (callAPI.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ankur",
                      family = "Chakravarthy",
                      role = c("aut", "cre"),
                      email = "ankur.chakravarthy.10@ucl.ac.uk"),
               person(family = "PhD",
                      role = "aut"))
as necessary.
Maintainer: ‘Shangzhi Hong <shangzhi-hong@hotmail.com>’

The Description field contains
  <arXiv:2004.14823>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Miron Bartosz Kursa <M.Kursa@icm.edu.pl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
parse_sensor.html:46:1 (parse_sensor.Rd:10): Warning: missing </ul> before </div>
parse_station.html:46:1 (parse_station.Rd:10): Warning: missing </ul> before </div>
parse_timepoint.html:46:1 (parse_timepoint.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) fs_search.Rd:76: Lost braces
    76 | \\code{\link{fs_auth}} \code{\link{fs_browse}}
       |       ^
Found the following HTML validation problems:
fs_add_author.html:54:1 (fs_add_author.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘common_names.R’ ‘distribution.R’ ‘fb_tbl.R’
Maintainer: ‘Karthik Ram <karthik.ram@gmail.com>’

The Description field contains
  of the 'rOpenSci' suite (http://ropensci.org).
Please enclose URLs in angle brackets (<...>).

The BugReports field in DESCRIPTION has
  http://www.github.com/ropensci/rfisheries/issues/new
which should likely be
  http://www.github.com/ropensci/rfisheries/issues/new/issues
instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘John Kloke <johndkloke@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Kloke",
                      role = c("aut", "cre"),
                      email = "johndkloke@gmail.com"),
               person(given = "Joseph",
                      family = "McKean",
                      role = "aut"))
as necessary.
Maintainer: ‘Matthias Kohl <Matthias.Kohl@stamats.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dimitri",
                      family = "Justeau-Allaire",
                      role = c("aut", "cre"),
                      email = "dimitri.justeau@gmail.com"),
               person(given = "Grégoire",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Ibanez",
                      role = "aut"),
               person(given = "Xavier",
                      family = "Lorca",
                      role = "aut"),
               person(given = "Ghislain",
                      family = "Vieilledent",
                      role = "aut"),
               person(given = "Philippe",
                      family = "Birnbaum",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
'library' or 'require' calls not declared from:
  ‘rpanel’ ‘tkrplot’
Found the following HTML validation problems:
autohonestRF.html:47:1 (autohonestRF.Rd:10): Warning: missing </ul> before </div>
forest_checker.html:46:1 (forest_checker.Rd:10): Warning: missing </ul> before </div>
honestRF.html:47:1 (honestRF.Rd:10): Warning: missing </ul> before </div>
loadForestry-forestry.html:47:1 (loadForestry-forestry.Rd:10): Warning: missing </ul> before </div>
relinkCPP.html:47:1 (relinkCPP.Rd:10): Warning: missing </ul> before </div>
saveForestry-forestry.html:55:1 (saveForestry-forestry.Rd:14): Warning: missing </ul> before </div>
testing_data_checker-forestry.html:54:1 (testing_data_checker-forestry.Rd:15): Warning: missing </ul> before </div>
training_data_checker-forestry.html:191:1 (training_data_checker-forestry.Rd:109): Warning: missing </ul> before </div>
Found the following HTML validation problems:
QICu.geeglm.html:46:1 (QICu.geeglm.Rd:10): Warning: missing </ul> before </div>
adj.r.squared.html:50:1 (adj.r.squared.Rd:12): Warning: missing </ul> before </div>
apress.html:50:1 (apress.Rd:12): Warning: missing </ul> before </div>
int.p.val.html:50:1 (int.p.val.Rd:12): Warning: missing </ul> before </div>
max_abs_resid.html:46:1 (max_abs_resid.Rd:10): Warning: missing </ul> before </div>
r.squared.html:50:1 (r.squared.Rd:12): Warning: missing </ul> before </div>
rmse.html:50:1 (rmse.Rd:12): Warning: missing </ul> before </div>
which.max.na.html:46:1 (which.max.na.Rd:10): Warning: missing </ul> before </div>
which.min.na.html:46:1 (which.min.na.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Markus Loecher <Markus.Loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Loecher",
                    role = c("aut", "cre"),
                    email = "Markus.Loecher@gmail.com")
as necessary.
Found the following HTML validation problems:
data_transformer.html:109:1 (data_transformer.Rd:99): Warning: <h5> anchor "Usage" already defined
data_transformer.html:123:1 (data_transformer.Rd:108): Warning: <h5> anchor "Usage" already defined
data_transformer.html:139:1 (data_transformer.Rd:118): Warning: <h5> anchor "Usage" already defined
data_transformer.html:179:1 (data_transformer.Rd:146): Warning: <h5> anchor "Usage" already defined
data_transformer.html:193:1 (data_transformer.Rd:155): Warning: <h5> anchor "Usage" already defined
data_transformer.html:209:1 (data_transformer.Rd:165): Warning: <h5> anchor "Usage" already defined
data_transformer.html:215:1 (data_transformer.Rd:169): Warning: <h5> anchor "Arguments" already defined
data_transformer.html:228:1 (data_transformer.Rd:176): Warning: <h5> anchor "Examples" already defined
data_transformer.html:248:1 (data_transformer.Rd:192): Warning: <h5> anchor "Usage" already defined
data_transformer.html:262:1 (data_transformer.Rd:201): Warning: <h5> anchor "Usage" already defined
data_transformer.html:278:1 (data_transformer.Rd:211): Warning: <h5> anchor "Usage" already defined
data_transformer.html:284:1 (data_transformer.Rd:215): Warning: <h5> anchor "Arguments" already defined
data_transformer.html:297:1 (data_transformer.Rd:222): Warning: <h5> anchor "Examples" already defined
data_transformer.html:320:1 (data_transformer.Rd:240): Warning: <h5> anchor "Usage" already defined
data_transformer.html:326:1 (data_transformer.Rd:244): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Joseph Kelly <josephkelly@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joseph",
                      family = "Kelly",
                      role = c("aut", "cre"),
                      email = "josephkelly@post.harvard.edu"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = "aut"),
               person(given = "Carl",
                      family = "Morris",
                      role = "aut"))
as necessary.
Maintainer: ‘Cristian Quiroz-Moreno <cristianquirozd1997@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
checkRd: (-1) GenDataPopulation.Rd:21: Lost braces
    21 | {data}{Population of data}
       |       ^
checkRd: (-1) GenDataSample.Rd:23: Lost braces
    23 | {data}{Sample of data}
       |       ^
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Maintainer: ‘Lorenzo Rimella <lorenzo.rimella@hotmail.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenzo",
                    family = "Rimella",
                    role = c("aut", "cre"),
                    email = "lorenzo.rimella@hotmail.it")
as necessary.
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

The Description field contains
  Miolane et al. (2020) <arXiv:2004.04667>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘connection.R’ ‘level-set.R’ ‘lie-group.R’ ‘manifold.R’ ‘open-set.R’
    ‘spd-matrices.R’ ‘utils.R’
checkRd: (-1) RiemannianMetric.Rd:450-453: Lost braces
   450 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
checkRd: (-1) RiemannianMetric.Rd:484-487: Lost braces
   484 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
checkRd: (-1) RiemannianMetric.Rd:588-591: Lost braces
   588 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
Maintainer: ‘Jose Miguel Cotes Torres <jmcotes@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "Miguel", "Cotes", "Torres.", "Universidad", "Nacional", "de", "Colombia", "-", "Sede"),
                      family = "Medellin",
                      role = "aut"),
               person(given = c("Jose", "Miguel", "Cotes"),
                      family = "Torres",
                      role = "cre",
                      email = "jmcotes@unal.edu.co"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (JOSS reviewer), Jonathan Cardoso Silva [rev] (JOSS reviewer)’
  Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (what: JOSS reviewer), Jonathan Cardoso Silva [rev] (what: JOSS reviewer)’
checkRd: (-1) Ghana_2021_school_attendance.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Ghana_2021_school_attendance_geometry.Rd:75: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Virgilio Gómez-Rubio <virgilio.gomez@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("María", "José"),
                      family = "Haro-Delicado",
                      role = "aut"),
               person(given = "Virgilio",
                      family = "Gómez-Rubio",
                      role = c("aut", "cre"),
                      email = "virgilio.gomez@uclm.es"),
               person(given = "Francisco",
                      family = "Parreńo-Torres",
                      role = "aut"))
as necessary.
Maintainer: ‘Danail Obreschkow <danail.obreschkow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danail",
                    family = "Obreschkow",
                    role = c("aut", "cre"),
                    email = "danail.obreschkow@gmail.com")
as necessary.
Maintainer: ‘Francisco Richter <richtf@usi.ch>’

The Description field contains
  Environments." <arXiv:2304.01956>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
gn_debug.html:46:1 (gn_debug.Rd:10): Warning: missing </ul> before </div>
install_gnparser.html:79:1 (install_gnparser.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check.functions.html:62:1 (check.functions.Rd:18): Warning: missing </ul> before </div>
power_studies_results.html:47:1 (power_studies_results.Rd:11): Warning: missing </ul> before </div>
pvaluecdf.html:47:1 (pvaluecdf.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Jalpa Joshi Dave <jalpa@tatvic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jalpa", "Joshi"),
                    family = "Dave",
                    role = c("aut", "cre"),
                    email = "jalpa@tatvic.com")
as necessary.
Found the following HTML validation problems:
ValidateToken.html:47:1 (ValidateToken.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
archive_course.html:46:1 (archive_course.Rd:10): Warning: missing </ul> before </div>
commit_to_form.html:54:1 (commit_to_form.Rd:14): Warning: missing </ul> before </div>
create_topic.html:50:1 (create_topic.Rd:12): Warning: missing </ul> before </div>
delete_course.html:46:1 (delete_course.Rd:10): Warning: missing </ul> before </div>
delete_coursework.html:50:1 (delete_coursework.Rd:12): Warning: missing </ul> before </div>
get_course_properties.html:46:1 (get_course_properties.Rd:10): Warning: missing </ul> before </div>
get_coursework_properties.html:50:1 (get_coursework_properties.Rd:12): Warning: missing </ul> before </div>
get_drive_file_list.html:46:1 (get_drive_file_list.Rd:10): Warning: missing </ul> before </div>
get_topic_properties.html:50:1 (get_topic_properties.Rd:12): Warning: missing </ul> before </div>
is.google_forms_request.html:46:1 (is.google_forms_request.Rd:10): Warning: missing </ul> before </div>
publish_coursework.html:50:1 (publish_coursework.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Marcin Szymanski <ms32035@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcin",
                    family = "Szymanski",
                    role = c("aut", "cre"),
                    email = "ms32035@gmail.com")
as necessary.
Found the following HTML validation problems:
GetFitDataset.html:60:1 (GetFitDataset.Rd:16): Warning: missing </ul> before </div>
GetFitDatasource.html:51:1 (GetFitDatasource.Rd:12): Warning: missing </ul> before </div>
GetFitDatasources.html:46:1 (GetFitDatasources.Rd:10): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Michal Bojanowski [aut, cre] (<https://orcid.org/0000-0001-7503-852X>, Kozminski University), David Schoch [aut] (<https://orcid.org/0000-0003-2952-4812>)’
  Authors@R: ‘Michal Bojanowski [aut, cre] (ORCID: <https://orcid.org/0000-0001-7503-852X>, affil: Kozminski University), David Schoch [aut] (ORCID: <https://orcid.org/0000-0003-2952-4812>)’
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Found the following HTML validation problems:
grid.utext.html:58:1 (grid.utext.Rd:14): Warning: missing </ul> before </div>
grid.utextvp.html:58:1 (grid.utextvp.Rd:14): Warning: missing </ul> before </div>
splitString.html:47:1 (splitString.Rd:11): Warning: missing </ul> before </div>
splitTextGrob.html:51:1 (splitTextGrob.Rd:12): Warning: missing </ul> before </div>
utextDynamic.html:63:1 (utextDynamic.Rd:15): Warning: missing </ul> before </div>
utextStatic.html:64:1 (utextStatic.Rd:17): Warning: missing </ul> before </div>
utextvpDynamic.html:67:1 (utextvpDynamic.Rd:16): Warning: missing </ul> before </div>
utextvpStatic.html:68:1 (utextvpStatic.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
GreenplumResult-class.html:51:1 (GreenplumResult-class.Rd:13): Warning: missing </ul> before </div>
dbConnect-GreenplumDriver-method.html:92:1 (dbConnect-GreenplumDriver-method.Rd:41): Warning: missing </ul> before </div>
greenplum-tables.html:97:1 (greenplum-tables.Rd:39): Warning: missing </ul> before </div>
hidden_aliases.html:89:1 (hidden_aliases.Rd:41): Warning: missing </ul> before </div>
checkRd: (-1) code_sawtooth_design.Rd:53: Lost braces
    53 | /url{http://www.sawtoothsoftware.com/help/lighthouse-studio/manual/index.html?hid_web_cbc_exporting.html}
       |     ^
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Found the following HTML validation problems:
CheckJRERuntimeVersion.html:48:1 (CheckJRERuntimeVersion.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Yichuan Bai <ycbai@iastate.edu>’

The Description field contains
  <arXiv:2307.12325>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam Mantz <amantz@slac.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Mantz",
                    role = c("aut", "cre"),
                    email = "amantz@slac.stanford.edu")
as necessary.
checkRd: (-1) rhandsontable-package.Rd:8: Lost braces
     8 | R interface for creating tables using Handsontable, url{https://handsontable.com/}
       |                                                        ^
Found the following HTML validation problems:
set_data.html:66:1 (set_data.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gerry Tonkin-Hill <g.tonkinhill@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Victhor Sartório <victhor@dme.ufrj.br>’

The Description field contains
  See Neal (2017) <arXiv:1701.02434> for further details on Hamiltonian
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rezgar", "Arabzadeh;", "Shahab"),
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = "cre",
                      email = "rezgararabzadeh@ut.ac.ir"))
as necessary.
Maintainer: ‘Shonosuke Sugasawa <shonosuke622@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shonosuke",
                    family = "Sugasawa",
                    role = c("aut", "cre"),
                    email = "shonosuke622@gmail.com")
as necessary.
Found the following HTML validation problems:
cash-.rating.set.html:51:1 (cash-.rating.set.Rd:12): Warning: missing </ul> before </div>
contingency_table.html:58:1 (contingency_table.Rd:16): Warning: missing </ul> before </div>
kappa_ct.html:46:1 (kappa_ct.Rd:10): Warning: missing </ul> before </div>
random_contingency_table.html:73:1 (random_contingency_table.Rd:27): Warning: missing </ul> before </div>
sample_contingency_table.html:54:1 (sample_contingency_table.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Christophe Dutang <christophe.dutang@ensimag.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christophe",
                      family = "Dutang",
                      role = c("aut", "cre"),
                      email = "christophe.dutang@ensimag.fr"),
               person(given = "Julie",
                      family = "Barthes",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘mydata.rda’ ‘thedata.rda’
checkRd: (-1) GenerateClusterData.Rd:34: Lost braces; missing escapes or markup?
    34 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2},
       |                                                ^
checkRd: (-1) GenerateClusterData.Rd:35: Lost braces; missing escapes or markup?
    35 | -v_{(numberOfClusters-1)/2} (if \code{numberOfClusters} is odd)
       |    ^
checkRd: (-1) GenerateClusterData.Rd:36: Lost braces; missing escapes or markup?
    36 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2}
       |                                                ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:25-26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:27-28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:29-30: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:31-32: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:33-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:35-36: Lost braces
    35 |    \item{pam_cluster_64_7_5715},{N=64, seven clusters with 5715 vectors per
       |                                 ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:37-38: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:39-40: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
Found the following HTML validation problems:
ComputeAverageTime.html:53:1 (ComputeAverageTime.Rd:13): Warning: missing </ul> before </div>
ComputeStandardDeviation.html:54:1 (ComputeStandardDeviation.Rd:13): Warning: missing </ul> before </div>
CrossprodAllocator.html:58:1 (CrossprodAllocator.Rd:16): Warning: missing </ul> before </div>
DeformtransAllocator.html:59:1 (DeformtransAllocator.Rd:16): Warning: missing </ul> before </div>
DeterminantAllocator.html:58:1 (DeterminantAllocator.Rd:16): Warning: missing </ul> before </div>
EigenAllocator.html:58:1 (EigenAllocator.Rd:16): Warning: missing </ul> before </div>
LsfitAllocator.html:57:1 (LsfitAllocator.Rd:16): Warning: missing </ul> before </div>
MatmatAllocator.html:59:1 (MatmatAllocator.Rd:16): Warning: missing </ul> before </div>
MatvecAllocator.html:59:1 (MatvecAllocator.Rd:16): Warning: missing </ul> before </div>
QrAllocator.html:59:1 (QrAllocator.Rd:16): Warning: missing </ul> before </div>
SolveAllocator.html:59:1 (SolveAllocator.Rd:17): Warning: missing </ul> before </div>
SparseCholeskyAllocator.html:58:1 (SparseCholeskyAllocator.Rd:16): Warning: missing </ul> before </div>
SparseLuAllocator.html:57:1 (SparseLuAllocator.Rd:16): Warning: missing </ul> before </div>
SparseQrAllocator.html:57:1 (SparseQrAllocator.Rd:16): Warning: missing </ul> before </div>
SvdAllocator.html:58:1 (SvdAllocator.Rd:16): Warning: missing </ul> before </div>
TransposeAllocator.html:58:1 (TransposeAllocator.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Ei-ji Nakama <nakama@ki.rim.or.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junji",
                      family = "NAKANO",
                      role = "aut",
                      email = "nakanoj@ism.ac.jp"),
               person(given = "Ei-ji",
                      family = "Nakama",
                      role = c("aut", "cre"),
                      email = "nakama@ki.rim.or.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘RHRVEasy.R’ ‘easyStatsFunctions.R’
Found the following HTML validation problems:
SaveHRVIndices.html:62:1 (SaveHRVIndices.Rd:22): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check.html:46:1 (check.Rd:10): Warning: missing </ul> before </div>
check_for_cran.html:46:1 (check_for_cran.Rd:10): Warning: missing </ul> before </div>
check_shortcuts.html:72:1 (check_shortcuts.Rd:49): Warning: missing </ul> before </div>
get_check.html:46:1 (get_check.Rd:10): Warning: missing </ul> before </div>
last_check.html:46:1 (last_check.Rd:10): Warning: missing </ul> before </div>
list_my_checks.html:46:1 (list_my_checks.Rd:10): Warning: missing </ul> before </div>
list_package_checks.html:46:1 (list_package_checks.Rd:10): Warning: missing </ul> before </div>
list_validated_emails.html:46:1 (list_validated_emails.Rd:10): Warning: missing </ul> before </div>
local_check_linux.html:46:1 (local_check_linux.Rd:10): Warning: missing </ul> before </div>
local_check_linux_images.html:46:1 (local_check_linux_images.Rd:10): Warning: missing </ul> before </div>
platforms.html:46:1 (platforms.Rd:10): Warning: missing </ul> before </div>
rhub-package.html:328:1 (rhub-package.Rd:261): Warning: missing </ul> before </div>
rhub_doctor.html:49:1 (rhub_doctor.Rd:12): Warning: missing </ul> before </div>
rhubv2.html:205:1 (rhubv2.Rd:129): Warning: missing </ul> before </div>
validate_email.html:46:1 (validate_email.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "LI",
                      role = c("aut", "cre"),
                      email = "ynaulx@gmail.com"),
               person(given = "Linna",
                      family = "MA",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiang",
                    family = "LI",
                    role = c("aut", "cre"),
                    email = "ynaulx@gmail.com")
as necessary.
Found the following HTML validation problems:
col_renamer.html:60:1 (col_renamer.Rd:18): Warning: missing </ul> before </div>
label_sirs.html:88:1 (label_sirs.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Steffen Moritz <steffen.moritz10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
dot-onAttach.html:46:1 (dot-onAttach.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Xinyuan Fan <fxy22@mails.tsinghua.edu.cn>’

The Description field contains
  and Wu (2024) <arXiv:2403.00600>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) iex.chart.Rd:23: Lost braces; missing escapes or markup?
    23 | r takes only of of the values accepted IN API request. {"5y", "2y", "1y", "ytd", "6m", "3m", "1m", "1d"}
       |                                                        ^
Maintainer: ‘Kean Ming Tan <ktan@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kean", "Ming"),
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "ktan@umn.edu")
as necessary.

The Description field contains
  Journal of the Royal Statistical Society: Series B. <arXiv:1604.08697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pavel", "V."),
                      family = "Moskalev",
                      role = c("aut", "cre"),
                      email = "moskalefff@gmail.com"),
               person(given = c("Alexey", "G."),
                      family = "Bukhovets",
                      role = "aut"),
               person(given = c("Tatyana", "Ya."),
                      family = "Biruchinskay",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
req_figma_template.html:70:1 (req_figma_template.Rd:28): Warning: missing </ul> before </div>
request_figma.html:57:1 (request_figma.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
convert_to_local_time.html:52:1 (convert_to_local_time.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Joel Carlson <jnkcarlson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joel",
                    family = "Carlson",
                    role = c("aut", "cre"),
                    email = "jnkcarlson@gmail.com")
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
File ‘RInside/libs/RInside.so’:
  Found ‘srand’, possibly from ‘srand’ (C)
    Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
  Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
    ‘R_DefParams’, ‘R_ReplDLLinit’, ‘R_RunExitFinalizers’,
    ‘R_SetParams’, ‘R_SignalHandlers’, ‘R_TempDir’, ‘Rf_endEmbeddedR’,
    ‘Rf_initEmbeddedR’, ‘run_Rmainloop’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘population_utils.R’
Found the following HTML validation problems:
helpers.html:144:1 (helpers.Rd:75): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.iptw_result.html:51:1 (print.iptw_result.Rd:12): Warning: missing </ul> before </div>
print.riskdiff_iptw_result.html:51:1 (print.riskdiff_iptw_result.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
parse_dcf_dependencies.html:46:1 (parse_dcf_dependencies.Rd:10): Warning: missing </ul> before </div>
remove_base_packages.html:46:1 (remove_base_packages.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  parity portfolios. <arXiv:1311.4057>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) riskParityPortfolio.Rd:163: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:164: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:165: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:167: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:168: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:169: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:170: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) riskPredict.Rd:38: Lost braces
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       | ^
checkRd: (-1) riskPredict.Rd:38: Lost braces
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       |     ^
checkRd: (-1) riskPredict.Rd:38: Lost braces; missing escapes or markup?
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       |             ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       | ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |     ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces; missing escapes or markup?
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |             ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |                      ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces; missing escapes or markup?
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |                              ^
Maintainer: ‘Saralees Nadarajah <mbbsssn2@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "mbbsssn2@manchester.ac.uk"),
               person(given = "Stephen",
                      family = "Chan",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
risk_mod_random_start.html:102:1 (risk_mod_random_start.Rd:46): Warning: missing </ul> before </div>
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Found the following HTML validation problems:
scale.DesignOptions.html:55:1 (scale.DesignOptions.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Gregory Pasternack <gpast@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Pasternack",
                      role = c("aut", "cre"),
                      email = "gpast@ucdavis.edu"),
               person(given = "Rafaeli",
                      family = "Arroyo",
                      role = "aut",
                      email = "rtoarroyo@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plotdensity.R’
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Maintainer: ‘Aleksander Mendyk <mfmendyk@cyf-kr.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aleksander",
                      family = "Mendyk",
                      role = c("aut", "cre"),
                      email = "mfmendyk@cyf-kr.edu.pl"),
               person(given = c("with", "contributions", "from", "Sebastian"),
                      family = "Polak.",
                      role = "aut",
                      email = "mfpolak@@cyf-kr.edu.pl"))
as necessary.
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                             ^
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                                                                   ^
Maintainer: ‘Gabriela Cohen-Freue <gcohen@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriela",
                      family = "Cohen-Freue",
                      role = c("aut", "cre"),
                      email = "gcohen@stat.ubc.ca"),
               person(given = "Davor",
                      family = "Cubranic",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "B."),
                      family = "Kaufmann",
                      role = "aut"),
               person(given = "R.H.",
                      family = "Zamar",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jeroen Ooms <jeroen@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeroen",
                      family = "Ooms",
                      role = c("aut", "cre"),
                      email = "jeroen@berkeley.edu"),
               person(given = "Forbes",
                      family = "Lindesay",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
global_quiet_param.html:46:1 (global_quiet_param.Rd:10): Warning: missing </ul> before </div>
java_env_set_rprofile.html:50:1 (java_env_set_rprofile.Rd:12): Warning: missing </ul> before </div>
java_env_set_session.html:46:1 (java_env_set_session.Rd:10): Warning: missing </ul> before </div>
rje_envvar_exists.html:48:1 (rje_envvar_exists.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "simon.urbanek@r-project.org")
as necessary.

Package installs .java files.
Package has FOSS license, installs .class/.jar but has no 'java' directory.
Non-standard file/directory found at top level:
  ‘jri’
Found the following possibly unsafe calls:
File ‘rJava/R/import.R’:
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File ‘rJava/R/jinit.R’:
  unlockBinding(x, .env)
  unlockBinding(x, pe)
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  Found ‘_exit’, possibly from ‘_exit’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)
File ‘rJava/libs/rJava.so’:
  Found non-API calls to R: ‘EXTPTR_PROT’, ‘EXTPTR_PTR’,
    ‘R_CStackLimit’, ‘R_CStackStart’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
rJava-internal.html:141:1 (rJava-internal.Rd:78): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
License stub is invalid DCF.
Found the following HTML validation problems:
setProviderCredentials.html:54:1 (setProviderCredentials.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Carlos Prieto <cprietos@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlos",
                      family = "Prieto",
                      role = c("aut", "cre"),
                      email = "cprietos@usal.es"),
               person(given = "David",
                      family = "Barrios",
                      role = "aut",
                      email = "metal@usal.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aaron Schumacher <ajschumacher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Schumacher",
                      role = c("aut", "cre"),
                      email = "ajschumacher@gmail.com"),
               person(given = "Håkon",
                      family = "Malmedal",
                      role = "aut"),
               person(given = "Måns",
                      family = "Magnusson",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
id.html:52:1 (id.Rd:15): Warning: missing </ul> before </div>
status.html:52:1 (status.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rjournal_website.html:50:1 (rjournal_website.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Shruti Gupta <shrutigupta34@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shruti",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "shrutigupta34@gmail.com"),
               person(given = "Coda",
                      family = "Hale"),
               person(given = "Yammer",
                      family = "Inc.",
                      role = c("ctb", "cph")))
as necessary.
Found the following HTML validation problems:
writeDatFromDataframes.html:59:1 (writeDatFromDataframes.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Mutua Kilai <kilaimutua@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mutua",
                    family = "Kilai",
                    role = c("aut", "cre"),
                    email = "kilaimutua@gmail.com")
as necessary.
Maintainer: ‘Halaleh Kamari <halaleh.kamari@univ-evry.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Halaleh",
                    family = "Kamari",
                    role = c("aut", "cre"),
                    email = "halaleh.kamari@univ-evry.fr")
as necessary.

The Description field contains
  H., Huet, S. and Taupin, M.-L. (2019) <arXiv:1905.13695>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Titus K Rotich <rktitus@uoeld.ac.ke>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Titus", "K"),
                    family = "Rotich",
                    role = c("aut", "cre"),
                    email = "rktitus@uoeld.ac.ke")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘higher_order_metadata.R’
Found the following HTML validation problems:
pipe.html:44:1 (pipe.Rd:9): Warning: missing </ul> before </div>
Found the following HTML validation problems:
KorAPCorpusStats-class.html:47:1 (KorAPCorpusStats-class.Rd:12): Warning: missing </ul> before </div>
KorAPQuery-class.html:74:1 (KorAPQuery-class.Rd:38): Warning: missing </ul> before </div>
apiCall-KorAPConnection-method.html:66:1 (apiCall-KorAPConnection-method.Rd:24): Warning: missing </ul> before </div>
initialize-KorAPQuery-method.html:105:1 (initialize-KorAPQuery-method.Rd:46): Warning: missing </ul> before </div>
log_info.html:52:1 (log_info.Rd:12): Warning: missing </ul> before </div>
show-KorAPConnection-method.html:47:1 (show-KorAPConnection-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Aldo Marchetto <aldo.marchetto@cnr.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aldo",
                    family = "Marchetto",
                    role = c("aut", "cre"),
                    email = "aldo.marchetto@cnr.it")
as necessary.
Maintainer: ‘Md Ashad Alam <malam@tulane.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Md", "Ashad"),
                    family = "Alam",
                    role = c("aut", "cre"),
                    email = "malam@tulane.edu")
as necessary.
Maintainer: ‘Dennis Boos <boos@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dennis", "D."),
                      family = "Boos",
                      role = "aut"),
               person(given = "Douglas",
                      family = "Nychka",
                      role = "aut"),
               person(given = "Dennis",
                      family = "Boos",
                      role = "cre",
                      email = "boos@ncsu.edu"))
as necessary.
checkRd: (-1) Exponential.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) Gamma.Rd:80: Escaped LaTeX specials: \&
checkRd: (-1) college.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) college.Rd:15: Escaped LaTeX specials: \$
Maintainer: ‘Luke Winslow <lawinslow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Winslow",
                      role = c("aut", "cre"),
                      email = "lawinslow@gmail.com"),
               person(given = "Jordan",
                      family = "Read",
                      role = "aut"),
               person(given = "Richard",
                      family = "Woolway",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Brentrup",
                      role = "aut"),
               person(given = "Taylor",
                      family = "Leach",
                      role = "aut"),
               person(given = "Jake",
                      family = "Zwart",
                      role = "aut"),
               person(given = "Sam",
                      family = "Albers",
                      role = "aut"),
               person(given = "Doug",
                      family = "Collinge",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
get.datetime.html:50:1 (get.datetime.Rd:12): Warning: missing </ul> before </div>
File ‘rlang/libs/rlang.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘OBJECT’, ‘PRENV’, ‘PRVALUE’,
    ‘R_PromiseExpr’, ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’, ‘SETLENGTH’,
    ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FORMALS’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘SET_TYPEOF’, ‘XTRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
check.html:68:1 (check.Rd:15): Warning: missing </ul> before </div>
las_specification_tools.html:171:1 (las_specification_tools.Rd:180): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chartEvent.Rd: App
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
listen.html:59:1 (listen.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Patricia Conde-Clemente <patricia.condeclemente@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patricia",
                      family = "Conde-Clemente",
                      role = c("aut", "cre"),
                      email = "patricia.condeclemente@gmail.com"),
               person(given = c("Jose", "M."),
                      family = "Alonso",
                      role = "aut"),
               person(given = "Gracian",
                      family = "Trivino",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wei-Min Wang <wmwang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei-Min",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wmwang@gmail.com")
as necessary.
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Found the following HTML validation problems:
printspl.html:63:1 (printspl.Rd:24): Warning: missing </ul> before </div>
spLayer.SpatialGridDataFrame.html:79:1 (spLayer.SpatialGridDataFrame.Rd:30): Warning: missing </ul> before </div>
spLayer.SpatialLines.html:104:1 (spLayer.SpatialLines.Rd:45): Warning: missing </ul> before </div>
spLayer.SpatialPoints.html:145:1 (spLayer.SpatialPoints.Rd:64): Warning: missing </ul> before </div>
spLayer.SpatialPolygons.html:124:1 (spLayer.SpatialPolygons.Rd:57): Warning: missing </ul> before </div>
spLayer.default.html:51:1 (spLayer.default.Rd:12): Warning: missing </ul> before </div>
spLayerControl.html:113:1 (spLayerControl.Rd:51): Warning: missing </ul> before </div>
summarymaplayer.html:69:1 (summarymaplayer.Rd:30): Warning: missing </ul> before </div>
uiJS.html:51:1 (uiJS.Rd:12): Warning: missing </ul> before </div>
writeMap.html:110:1 (writeMap.Rd:53): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.rle.html:52:1 (as.rle.Rd:16): Warning: missing </ul> before </div>
compress.html:50:1 (compress.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
EscalationRule.html:285:1 (EscalationRule.Rd:165): Warning: missing </ul> before </div>
EscalationRule.html:130:1 (EscalationRule.Rd:72): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:136:1 (EscalationRule.Rd:76): Warning: <h5> anchor "Arguments" already defined
EscalationRule.html:175:1 (EscalationRule.Rd:101): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:181:1 (EscalationRule.Rd:105): Warning: <h5> anchor "Arguments" already defined
EscalationRule.html:194:1 (EscalationRule.Rd:112): Warning: <h5> anchor "Returns" already defined
EscalationRule.html:211:1 (EscalationRule.Rd:121): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:217:1 (EscalationRule.Rd:125): Warning: <h5> anchor "Arguments" already defined
EscalationRule.html:246:1 (EscalationRule.Rd:144): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:262:1 (EscalationRule.Rd:154): Warning: <h5> anchor "Usage" already defined
EscalationRule.html:268:1 (EscalationRule.Rd:158): Warning: <h5> anchor "Arguments" already defined
clean_python_settings.html:46:1 (clean_python_settings.Rd:10): Warning: missing </ul> before </div>
setup_python.html:47:1 (setup_python.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Otryakhin and Podolskij (2018) <arXiv:1802.06373>, and also different
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
openOutput.html:51:1 (openOutput.Rd:12): Warning: missing </ul> before </div>
skipFeatureList.html:50:1 (skipFeatureList.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Rlgt-package.html:127:1 (Rlgt-package.Rd:79): Warning: <h4> anchor "Model-Equations" already defined
Rlgt-package.html:177:1 (Rlgt-package.Rd:110): Warning: <h4> anchor "Model-Equations" already defined
Rlgt-package.html:200:1 (Rlgt-package.Rd:120): Warning: <h4> anchor "Additional-Notations" already defined
Rlgt-package.html:213:1 (Rlgt-package.Rd:127): Warning: <h4> anchor "Additional-Parameters" already defined
lgt.html:51:1 (lgt.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Jouni Helske <jouni.helske@iki.fi>’

Found the following (possibly) invalid file URI:
  URI: https//cranlogs.r-pkg.org:443/badges/Rlibeemd
    From: README.md
Found the following HTML validation problems:
print.factorGSEA.html:51:1 (print.factorGSEA.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael Piccirilli <michael.r.piccirilli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Piccirilli",
                    role = c("aut", "cre"),
                    email = "michael.r.piccirilli@gmail.com")
as necessary.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Found the following HTML validation problems:
args_env.html:50:1 (args_env.Rd:12): Warning: missing </ul> before </div>
args_list.html:46:1 (args_list.Rd:10): Warning: missing </ul> before </div>
callwith.html:62:1 (callwith.Rd:18): Warning: missing </ul> before </div>
contains.html:50:1 (contains.Rd:12): Warning: missing </ul> before </div>
dot-evalwith.html:48:1 (dot-evalwith.Rd:11): Warning: missing </ul> before </div>
dots.html:46:1 (dots.Rd:10): Warning: missing </ul> before </div>
list.apply.html:54:1 (list.apply.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘You-Gan Wang <you-gan.wang@qut.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "You-Gan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "you-gan.wang@qut.edu.au"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"),
               person(given = "Aurelien",
                      family = "Callens",
                      role = "aut"),
               person(given = "Na",
                      family = "Wang.",
                      role = "aut"))
as necessary.
Maintainer: ‘Yusuf Bilgic <bilgic@geneseo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yusuf",
                      family = "Bilgic",
                      role = c("aut", "cre"),
                      email = "bilgic@geneseo.edu"),
               person(given = "Herb",
                      family = "Susmann",
                      role = "aut"),
               person(given = "Joseph",
                      family = "McKean",
                      role = "aut"))
as necessary.
Maintainer: ‘Yingsong Hu <yingsonghu@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yingsong",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "yingsonghu@hotmail.com"),
               person(given = "Wayne",
                      family = "Murray",
                      role = "aut"),
               person(given = "Yin",
                      family = "Shan",
                      role = "aut"),
               person(family = "Australia.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sunny Kumar <sunny.nitie14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sunny",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "sunny.nitie14@gmail.com")
as necessary.
Found the following HTML validation problems:
AllocationRule.html:281:1 (AllocationRule.Rd:161): Warning: missing </ul> before </div>
AllocationRule.html:129:1 (AllocationRule.Rd:71): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:135:1 (AllocationRule.Rd:75): Warning: <h5> anchor "Arguments" already defined
AllocationRule.html:171:1 (AllocationRule.Rd:97): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:177:1 (AllocationRule.Rd:101): Warning: <h5> anchor "Arguments" already defined
AllocationRule.html:190:1 (AllocationRule.Rd:108): Warning: <h5> anchor "Returns" already defined
AllocationRule.html:207:1 (AllocationRule.Rd:117): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:213:1 (AllocationRule.Rd:121): Warning: <h5> anchor "Arguments" already defined
AllocationRule.html:242:1 (AllocationRule.Rd:140): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:258:1 (AllocationRule.Rd:150): Warning: <h5> anchor "Usage" already defined
AllocationRule.html:264:1 (AllocationRule.Rd:154): Warning: <h5> anchor "Arguments" already defined
clean_python_settings.html:46:1 (clean_python_settings.Rd:10): Warning: missing </ul> before </div>
setup_python.html:47:1 (setup_python.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Fabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tong",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "hetong007@gmail.com"),
               person(given = "Oliver",
                      family = "Keyes",
                      role = "ctb"))
as necessary.

The Description field contains
  in Chinese (http://www.ltp-cloud.com/).
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
checkRd: (-1) ms_simplify.Rd:36: Lost braces
    36 | \url{https://github.com/mbloch/mapshaper/wiki/Simplification-Tips}{link}
       |                                                                   ^
Found the following HTML validation problems:
as_sf.html:57:1 (as_sf.Rd:18): Warning: missing </ul> before </div>
mz_contours.html:52:1 (mz_contours.Rd:13): Warning: missing </ul> before </div>
mz_date_time.html:52:1 (mz_date_time.Rd:12): Warning: missing </ul> before </div>
mz_place.html:71:1 (mz_place.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
html-dependencies.html:93:1 (html-dependencies.Rd:52): Warning: missing </ul> before </div>
html_notebook_metadata.html:48:1 (html_notebook_metadata.Rd:10): Warning: missing </ul> before </div>
latex-dependencies.html:55:1 (latex-dependencies.Rd:15): Warning: missing </ul> before </div>
latex_dependency.html:54:1 (latex_dependency.Rd:14): Warning: missing </ul> before </div>
shiny_prerendered_chunk.html:56:1 (shiny_prerendered_chunk.Rd:15): Warning: missing </ul> before </div>
shiny_prerendered_clean.html:47:1 (shiny_prerendered_clean.Rd:10): Warning: missing </ul> before </div>
shiny_prerendered_server_start_code.html:46:1 (shiny_prerendered_server_start_code.Rd:10): Warning: missing </ul> before </div>
yaml_front_matter.html:50:1 (yaml_front_matter.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
months_f.html:50:1 (months_f.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Marshall Brown <mdbrown@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marshall",
                    family = "Brown",
                    role = c("aut", "cre"),
                    email = "mdbrown@fredhutch.org")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘replace_doi.R’
Found the following HTML validation problems:
pilltabs_print.html:54:1 (pilltabs_print.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Mark Peterson <mark.phillip.peterson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Peterson",
                    role = c("aut", "cre"),
                    email = "mark.phillip.peterson@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘model-table.R’
Found the following HTML validation problems:
construct_table_from_formulas.html:46:1 (construct_table_from_formulas.Rd:10): Warning: missing </ul> before </div>
construct_table_from_models.html:48:1 (construct_table_from_models.Rd:11): Warning: missing </ul> before </div>
model_table_reconstructable.html:50:1 (model_table_reconstructable.Rd:12): Warning: missing </ul> before </div>
validate_model_table.html:46:1 (validate_model_table.Rd:10): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Johan Larsson <johanlarsson@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Johann R. Kleinbub <johann.kleinbub@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Johann", "R."),
                      family = "Kleinbub",
                      role = c("aut", "cre"),
                      email = "johann.kleinbub@gmail.com"),
               person(given = "Fabian",
                      family = "Ramseyer",
                      role = "aut"))
as necessary.
Maintainer: ‘Junhewk Kim <junhewk.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhewk",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "junhewk.kim@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ci.Rd: lavaan
  mbco.Rd: mxOption
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  <arXiv:2306.03883>). These procedures enable us to verify the overall
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Ryan M. Hope <rmh3093@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ryan", "M."),
                    family = "Hope",
                    role = c("aut", "cre"),
                    email = "rmh3093@gmail.com")
as necessary.
File ‘Rmixmod/libs/Rmixmod.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Object: ‘mixmod.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following HTML validation problems:
ellipse.html:54:1 (ellipse.Rd:14): Warning: missing </ul> before </div>
extract-methods.html:121:1 (extract-methods.Rd:101): Warning: missing </ul> before </div>
mixmodLearn.html:46:1 (mixmodLearn.Rd:10): Warning: missing </ul> before </div>
mixmodXmlInput.html:46:1 (mixmodXmlInput.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) histMisclassif.Rd:22: Lost braces
    22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
       |                 ^
checkRd: (-1) histMisclassif.Rd:22: Lost braces
    22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
       |                    ^
Maintainer: ‘Robert M. Kirkpatrick <rkirkpatrick2@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "M."),
                    family = "Kirkpatrick",
                    role = c("aut", "cre"),
                    email = "rkirkpatrick2@vcu.edu")
as necessary.
Maintainer: ‘Herdiantri Sufriyana <herdi@nycu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rmlnomogram/blob/master/doc/ml_nomogram_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "file"),
                      family = "AUTHORS",
                      role = "aut"),
               person(given = "Jan",
                      family = "Wijffels",
                      role = "cre",
                      email = "jwijffels@bnosac.be"))
as necessary.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘decrypt.Rd’ ‘encrypt.Rd’ ‘encrypt_raw.Rd’
checkRd: (-1) nsgaControl.Rd:20-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:28-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:36-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Henrik A. Friberg <haf@mosek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "MOSEK",
                      family = "ApS",
                      role = "aut"),
               person(given = c("Henrik", "A."),
                      family = "Friberg",
                      role = "cre",
                      email = "haf@mosek.com"))
as necessary.
Found the following calls to attach():
File ‘Rmosek/R/builder.R’:
  attach(builderenv, pos, name, warn.conflicts)
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
ai_ratio.html:55:1 (ai_ratio.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
integrateR.html:149:1 (integrateR.Rd:85): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Priyam Das <pdas@ncsu.edu>’

The Description field contains
  Described in the paper : Das (2016) <arXiv:1604.08616> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xu Qin <xuqin@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@uchicago.edu"),
               person(given = "Guanglei",
                      family = "Hong",
                      role = "aut"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Kentaro Ueno <ueno_kentaro@kuhp.kyoto-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kentaro",
                    family = "Ueno",
                    role = c("aut", "cre"),
                    email = "ueno_kentaro@kuhp.kyoto-u.ac.jp")
as necessary.
Maintainer: ‘Uwe Menzel <uwemenzel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Uwe",
                    family = "Menzel",
                    role = c("aut", "cre"),
                    email = "uwemenzel@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Iain", "M."),
                      family = "Johnstone",
                      role = "aut"),
               person(given = "Zongming",
                      family = "Ma",
                      role = "aut"),
               person(given = c("Patrick", "O."),
                      family = "Perry",
                      role = "aut"),
               person(given = "Morteza",
                      family = "Shahram",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/evanbiederstedt/RMTstat
which should likely be
  https://github.com/evanbiederstedt/RMTstat/issues
instead.
Maintainer: ‘Chenyu Ren <chenyu.ren@connect.polyu.hk>’

The Description field contains
  Ting Li, Zhongyuan Lyu, Chenyu Ren, Dong Xia (2023) <arXiv:2302.04437>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Rmumps__del_ptr.html:47:1 (Rmumps__del_ptr.Rd:10): Warning: missing </ul> before </div>
Rmumps__set_mat_ptr.html:51:1 (Rmumps__set_mat_ptr.Rd:12): Warning: missing </ul> before </div>
Rmumps__set_permutation.html:51:1 (Rmumps__set_permutation.Rd:12): Warning: missing </ul> before </div>
Rmumps__solveptr.html:59:1 (Rmumps__solveptr.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mvl_verify.html:47:1 (mvl_verify.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Sara Viviani <sara.viviani@yahoo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlo",
                      family = "Cafiero",
                      role = "aut"),
               person(given = "Sara",
                      family = "Viviani",
                      role = c("aut", "cre"),
                      email = "sara.viviani@yahoo.it"),
               person(given = "Mark",
                      family = "Nord",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RM.weights-package.Rd’:
    \keyword{ Conditional maximum likelihood, Rasch mo [TRUNCATED]
Found the following HTML validation problems:
dbWriteTable.html:151:1 (dbWriteTable.Rd:86): Warning: missing </ul> before </div>
make.db.names-MySQLConnection-character-method.html:105:1 (make.db.names-MySQLConnection-character-method.Rd:53): Warning: missing </ul> before </div>
checkRd: (-1) myTarGetClientList.Rd:33: Lost braces
    33 | {MyTarget API Documenation}{https://target.my.com/doc/api/detailed/#resource_agency_clients}
       |                            ^
Found the following HTML validation problems:
sampleChimeras.html:47:1 (sampleChimeras.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
all_numeric.html:50:1 (all_numeric.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
nassqs_fields.html:48:1 (nassqs_fields.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) rncl.Rd:53-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:59-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:65-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:73-78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:80-84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:86-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:92-93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:101-102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:104-105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:107-110: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:112-115: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:117-119: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:121-124: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kam Hamidieh <khamidieh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kam",
                    family = "Hamidieh",
                    role = c("aut", "cre"),
                    email = "khamidieh@gmail.com")
as necessary.
Maintainer: ‘Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NlistServersInCategory.Rd:11: Escaped LaTeX specials: \_
Maintainer: ‘Jan C. Thiele <rnetlogo@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jan", "C."),
                    family = "Thiele",
                    role = c("aut", "cre"),
                    email = "rnetlogo@gmx.de")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:338:1 (inst/NEWS.Rd:305): Warning: missing </ul> before </div>
NEWS.html:58:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:79:1 (inst/NEWS.Rd:83): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:93:1 (inst/NEWS.Rd:91): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:111:1 (inst/NEWS.Rd:105): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:122:1 (inst/NEWS.Rd:112): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:137:1 (inst/NEWS.Rd:126): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:155:1 (inst/NEWS.Rd:146): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:169:1 (inst/NEWS.Rd:156): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:193:1 (inst/NEWS.Rd:176): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:208:1 (inst/NEWS.Rd:195): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:236:1 (inst/NEWS.Rd:215): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:254:1 (inst/NEWS.Rd:234): Warning: <h4> anchor "NEW-FUNCTIONS" already defined
NEWS.html:265:1 (inst/NEWS.Rd:242): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:295:1 (inst/NEWS.Rd:266): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:306:1 (inst/NEWS.Rd:276): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:324:1 (inst/NEWS.Rd:296): Warning: <h4> anchor "BUG-FIXES" already defined
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kasper", "Welbers", "&", "Wouter"),
                      family = "van Atteveldt",
                      role = "aut"),
               person(given = "Kasper",
                      family = "Welbers",
                      role = "cre",
                      email = "kasperwelbers@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compare_documents.Rd’ ‘term_char_sim.Rd’ ‘term_union.Rd’
checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
add_characters.html:62:1 (add_characters.Rd:22): Warning: missing </ul> before </div>
lcapply.html:51:1 (lcapply.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ruizhe Chen <rchen18@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hesen",
                      family = "Li",
                      role = "aut"),
               person(given = "Ruizhe",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "rchen18@uic.edu"),
               person(given = "Hai",
                      family = "Nguyen",
                      role = "aut"),
               person(given = "Yu-Che",
                      family = "Chung",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
process_file_name.html:56:1 (process_file_name.Rd:15): Warning: missing </ul> before </div>
validate_year.html:54:1 (validate_year.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Found the following HTML validation problems:
detectCores.html:46:1 (detectCores.Rd:10): Warning: missing </ul> before </div>
getMergedDataset.html:57:1 (getMergedDataset.Rd:17): Warning: missing </ul> before </div>
ggplotClusters.html:52:1 (ggplotClusters.Rd:13): Warning: missing </ul> before </div>
ggplotCriterion.html:52:1 (ggplotCriterion.Rd:12): Warning: missing </ul> before </div>
ggplotLoadings.html:91:1 (ggplotLoadings.Rd:36): Warning: missing </ul> before </div>
ggplotPlotly.html:58:1 (ggplotPlotly.Rd:16): Warning: missing </ul> before </div>
ggplotScores.html:94:1 (ggplotScores.Rd:39): Warning: missing </ul> before </div>
plotClusters.html:64:1 (plotClusters.Rd:22): Warning: missing </ul> before </div>
plotCriterion.html:52:1 (plotCriterion.Rd:12): Warning: missing </ul> before </div>
plotLoadings.html:101:1 (plotLoadings.Rd:42): Warning: missing </ul> before </div>
plotScores.html:96:1 (plotScores.Rd:41): Warning: missing </ul> before </div>
setPPMbounds.html:50:1 (setPPMbounds.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
NEWS.html:47:79 (NEWS.Rd:17): Warning: missing </p> before <a>
NEWS.html:47:5 (NEWS.Rd:17): Warning: missing </a> before <a>
NEWS.html:47:202 (NEWS.Rd:17): Warning: inserting implicit <p>
NEWS.html:47:206 (NEWS.Rd:17): Warning: discarding unexpected </a>
NEWS.html:47:79 (NEWS.Rd:17): Warning: trimming empty <p>
NEWS.html:47:202 (NEWS.Rd:17): Warning: trimming empty <p>
Maintainer: ‘Bastiaan Quast <bquast@gmail.com>’

The Description field contains
  <arXiv:1412.3555>) and vanilla RNN.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.nrfa_api.html:51:1 (print.nrfa_api.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jongbin Jung <me@jongbin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jongbin",
                    family = "Jung",
                    role = c("aut", "cre"),
                    email = "me@jongbin.com")
as necessary.

The Description field contains
  implemented in Jung et al. (2017) <arXiv:1702.04690> based on Rosenbaum
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘projectRoads.Rd’
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  package. See Aleman-Gomez et al. (2021) <arXiv:2103.08874> for details
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) fData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:28-29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:45-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:55-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:59-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:66-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Gentry",
                      role = "aut",
                      email = "geoffjentry@gmail.com"),
               person(given = c("Duncan", "Temple"),
                      family = "Lang",
                      role = "aut",
                      email = "duncan@r-project.org"),
               person(given = "Pablo",
                      family = "Barbera",
                      role = "cre",
                      email = "pablo.barbera@nyu.edu"))
as necessary.
Maintainer: ‘Paul Smirnov <s.paul@mail.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Smirnov",
                    role = c("aut", "cre"),
                    email = "s.paul@mail.ru")
as necessary.
File ‘robfilter/libs/robfilter.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Ufuk Beyaztas <ufukbeyaztas@gmail.com>’

The Description field contains
  <arXiv:2111.01238> and Beyaztas, U., and Shang, H. L. (2022)
  <arXiv:2203.05065>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Found the following HTML validation problems:
h_get_erb.html:62:1 (h_get_erb.Rd:18): Warning: missing </ul> before </div>
h_interaction.html:50:1 (h_interaction.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Joseph Blubaugh <jestonblu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Blubaugh",
                    role = c("aut", "cre"),
                    email = "jestonblu@gmail.com")
as necessary.
Found the following HTML validation problems:
createITPSplineResult.html:85:1 (createITPSplineResult.Rd:35): Warning: missing </ul> before </div>
rewireCompl.html:84:1 (rewireCompl.Rd:35): Warning: missing </ul> before </div>
rewireOnl.html:50:1 (rewireOnl.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Grose <dan.grose@lancaster.ac.uk>’

The Description field contains
  (2014) <arXiv:1204.3358> and Agamennoni et al. (2018)
  of Ruckdeschel et al. (2014) <arXiv:1204.3358>, as well as the
  <arXiv:2007.03238>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.html:67:1 (print.Rd:22): Warning: missing </ul> before </div>
summary.html:67:1 (summary.Rd:22): Warning: missing </ul> before </div>
Package required but not available: ‘beadarray’

Package suggested but not available for checking: ‘beadarrayExampleData’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Maintainer: ‘Wennan Chang <wnchang@iu.edu>’

The Description field contains
  <arXiv:2005.11599>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
CTLERob-methods.html:66:1 (CTLERob-methods.Rd:24): Warning: missing </ul> before </div>
blockMap.html:46:1 (blockMap.Rd:10): Warning: missing </ul> before </div>
compPlot.html:66:1 (compPlot.Rd:20): Warning: missing </ul> before </div>
orderedLines.html:54:1 (orderedLines.Rd:14): Warning: missing </ul> before </div>
plot_CTLE-methods.html:61:1 (plot_CTLE-methods.Rd:21): Warning: missing </ul> before </div>
plot_mixtureReg.html:72:1 (plot_mixtureReg.Rd:24): Warning: missing </ul> before </div>
plot_mixtureRegList.html:58:1 (plot_mixtureRegList.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.list.robotstxt_text.html:51:1 (as.list.robotstxt_text.Rd:12): Warning: missing </ul> before </div>
fix_url.html:46:1 (fix_url.Rd:10): Warning: missing </ul> before </div>
get_robotstxt.html:132:1 (get_robotstxt.Rd:66): Warning: missing </ul> before </div>
get_robotstxts.html:136:1 (get_robotstxts.Rd:70): Warning: missing </ul> before </div>
guess_domain.html:46:1 (guess_domain.Rd:10): Warning: missing </ul> before </div>
is_suspect_robotstxt.html:46:1 (is_suspect_robotstxt.Rd:10): Warning: missing </ul> before </div>
is_valid_robotstxt.html:50:1 (is_valid_robotstxt.Rd:12): Warning: missing </ul> before </div>
named_list.html:46:1 (named_list.Rd:10): Warning: missing </ul> before </div>
null_to_defeault.html:50:1 (null_to_defeault.Rd:12): Warning: missing </ul> before </div>
paths_allowed.html:160:1 (paths_allowed.Rd:86): Warning: missing </ul> before </div>
paths_allowed_worker_spiderbar.html:62:1 (paths_allowed_worker_spiderbar.Rd:20): Warning: missing </ul> before </div>
print.robotstxt.html:51:1 (print.robotstxt.Rd:12): Warning: missing </ul> before </div>
print.robotstxt_text.html:51:1 (print.robotstxt_text.Rd:12): Warning: missing </ul> before </div>
remove_domain.html:46:1 (remove_domain.Rd:10): Warning: missing </ul> before </div>
rt_get_comments.html:46:1 (rt_get_comments.Rd:10): Warning: missing </ul> before </div>
rt_get_fields.html:54:1 (rt_get_fields.Rd:14): Warning: missing </ul> before </div>
rt_get_fields_worker.html:59:1 (rt_get_fields_worker.Rd:17): Warning: missing </ul> before </div>
rt_get_rtxt.html:47:1 (rt_get_rtxt.Rd:10): Warning: missing </ul> before </div>
rt_get_useragent.html:46:1 (rt_get_useragent.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Aditya Mishra <amishra@flatironinstitute.org>’

The Description field contains
  <arXiv:1909.04990>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
robservable-shiny.html:68:1 (robservable-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Jakob Raymaekers <j.raymaekers@maastrichtuniversity.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jakob",
                    family = "Raymaekers",
                    role = c("aut", "cre"),
                    email = "j.raymaekers@maastrichtuniversity.nl")
as necessary.

The Description field contains
  F. (2022) <arXiv:2202.08060>.  All algorithms run in quasilinear time.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) predict.robu.Rd:36-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:43-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:50-55: Lost braces in \itemize; meant \describe ?
Maintainer: ‘A. Randriamiharisoa <exelami@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alfio",
                      family = "Marazzi",
                      role = "aut",
                      email = "Alfio.Marazzi@unisante.ch"),
               person(given = "Jean-Luc",
                      family = "Muralti",
                      role = "aut"),
               person(given = "A.",
                      family = "Randriamiharisoa",
                      role = "cre",
                      email = "exelami@gmail.com"))
as necessary.
Maintainer: ‘Ray Bai <raybaistat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ray",
                    family = "Bai",
                    role = c("aut", "cre"),
                    email = "raybaistat@gmail.com")
as necessary.

The Description field contains
  (2020) <arXiv:2005.02930> for correcting and quantifying publication
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Erlis Ruli <erlisr@yahoo.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  by Ruli et al. (2017) <arXiv:1706.01752>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "Bouveyron", "&", "Stephane"),
                      family = "Girard",
                      role = "aut"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "cre",
                      email = "charles.bouveyron@gmail.com"))
as necessary.
Maintainer: ‘Chuan Hong <hong.chuan.hannah@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chuan",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "hong.chuan.hannah@gmail.com"),
               person(given = "Yong",
                      family = "Chen",
                      role = "aut"),
               person(given = "Yang",
                      family = "Ning",
                      role = "aut"),
               person(given = "Hao",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Zijian Guo <zijguo@stat.rutgers.edu>’

The Description field contains
  variables via TSHT('Guo et al.' (2016) <arXiv:1603.05224>) and
  SearchingSampling('Guo' (2021) <arXiv:2104.06911>), which are effective
  <arXiv:1609.06713>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Santiago I. Hurtado <santih@carina.fcaglp.unlp.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Santiago", "I."),
                    family = "Hurtado",
                    role = c("aut", "cre"),
                    email = "santih@carina.fcaglp.unlp.edu.ar")
as necessary.
Maintainer: ‘Youyi Fong <youyifong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Youyi",
                    family = "Fong",
                    role = c("aut", "cre"),
                    email = "youyifong@gmail.com")
as necessary.
Found the following HTML validation problems:
multinom.test.html:108:1 (multinom.test.Rd:46): Warning: missing </ul> before </div>
mw.mw.2.perm.html:93:1 (mw.mw.2.perm.Rd:39): Warning: missing </ul> before </div>
wmw.paired.replicates.test.html:108:1 (wmw.paired.replicates.test.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Maria del Carmen Calatrava Moreno <mc.calatrava.moreno@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "del", "Carmen", "Calatrava"),
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "mc.calatrava.moreno@gmail.com"),
               person(given = "Thomas",
                      family = "Auzinger",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
lmRob.fit.html:72:1 (lmRob.fit.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Ian M. Johnson <ijca2013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ian", "M."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "ijca2013@gmail.com")
as necessary.
Maintainer: ‘Claudio Agostinelli <claudio.agostinelli@unitn.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudio",
                      family = "Agostinelli",
                      role = c("aut", "cre"),
                      email = "claudio.agostinelli@unitn.it"),
               person(given = c("Victor", "J."),
                      family = "Yohai",
                      role = "aut",
                      email = "victoryohai@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Luke McGuinness <luke.mcguinness@bristol.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/mcguinlu/robvis
which should likely be
  https://github.com/mcguinlu/robvis/issues
instead.
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Maintainer: ‘Ben Sherwood <ben.sherwood@ku.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Sherwood",
                    role = c("aut", "cre"),
                    email = "ben.sherwood@ku.edu")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
ciAUC.html:52:1 (ciAUC.Rd:14): Warning: missing </ul> before </div>
ciROC.html:53:1 (ciROC.Rd:15): Warning: missing </ul> before </div>
gainstable.html:48:1 (gainstable.Rd:11): Warning: missing </ul> before </div>
ksplot.html:52:1 (ksplot.Rd:14): Warning: missing </ul> before </div>
measureit.html:48:1 (measureit.Rd:11): Warning: missing </ul> before </div>
checkRd: (-1) descriptiveTable.Rd:18: Lost braces
    18 | other object type that does not fail in code{model.frame(object)}.}
       |                                             ^
Maintainer: ‘Jeffrey R. Webber <jwebber@geo.umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "R."),
                    family = "Webber",
                    role = c("aut", "cre"),
                    email = "jwebber@geo.umass.edu")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rocNIT.Rd’:
    \keyword{Non-inferiority test, receiver operating  [TRUNCATED]
Maintainer: ‘Felix G.M. Ernst <felix.gm.ernst@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
checkRd: (-1) performance.Rd:35: Escaped LaTeX specials: \#
checkRd: (-1) performance.Rd:36: Escaped LaTeX specials: \# \# \#
checkRd: (-1) performance.Rd:37: Escaped LaTeX specials: \# \#
Found the following HTML validation problems:
poly.kernel.html:58:1 (poly.kernel.Rd:16): Warning: missing </ul> before </div>
radial.kernel.html:58:1 (radial.kernel.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dbGetInfo-ODBCConnection-method.html:51:1 (dbGetInfo-ODBCConnection-method.Rd:13): Warning: missing </ul> before </div>
dbListTables-ODBCConnection-method.html:47:1 (dbListTables-ODBCConnection-method.Rd:11): Warning: missing </ul> before </div>
dbRemoveTable-ODBCConnection-character-method.html:51:1 (dbRemoveTable-ODBCConnection-character-method.Rd:13): Warning: missing </ul> before </div>
odbc-query.html:75:1 (odbc-query.Rd:28): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ODEAdaptiveSolver-class.html:77:1 (ODEAdaptiveSolver-class.Rd:34): Warning: missing </ul> before </div>
getODE-method.html:50:1 (getODE-method.Rd:12): Warning: missing </ul> before </div>
getRateCounts-method.html:50:1 (getRateCounts-method.Rd:12): Warning: missing </ul> before </div>
getTolerance-method.html:50:1 (getTolerance-method.Rd:12): Warning: missing </ul> before </div>
importFromExamples.html:50:1 (importFromExamples.Rd:12): Warning: missing </ul> before </div>
setSolver-method.html:50:1 (setSolver-method.Rd:12): Warning: missing </ul> before </div>
showMethods2.html:46:1 (showMethods2.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  described in Centofanti et al. (2021) <arXiv:2112.10643>.  It allows
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rofanova.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:65:1 (inst/NEWS.Rd:29): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:87:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "New-features" already defined
NEWS.html:123:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:141:1 (inst/NEWS.Rd:72): Warning: <h4> anchor "New-features" already defined
NEWS.html:173:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:204:1 (inst/NEWS.Rd:108): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:233:1 (inst/NEWS.Rd:124): Warning: <h4> anchor "New-feature" already defined
NEWS.html:249:1 (inst/NEWS.Rd:133): Warning: <h4> anchor "Changes" already defined
NEWS.html:262:1 (inst/NEWS.Rd:140): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:289:1 (inst/NEWS.Rd:156): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:301:1 (inst/NEWS.Rd:162): Warning: <h4> anchor "New-features" already defined
NEWS.html:321:1 (inst/NEWS.Rd:174): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:353:1 (inst/NEWS.Rd:191): Warning: <h4> anchor "New-features" already defined
NEWS.html:370:1 (inst/NEWS.Rd:200): Warning: <h4> anchor "Bug-fixes" already defined
Maintainer: ‘Benjamin Schwendinger <benjaminschwe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Schwendinger",
                    role = c("aut", "cre"),
                    email = "benjaminschwe@gmail.com")
as necessary.
Found the following HTML validation problems:
control.html:280:1 (control.Rd:150): Warning: missing </ul> before </div>
Found the following HTML validation problems:
neos_control.html:124:1 (neos_control.Rd:62): Warning: missing </ul> before </div>
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_solve.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:28-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
ROI_constraint.html:81:1 (ROI_constraint.Rd:24): Warning: missing </ul> before </div>
ROI_options.html:53:1 (ROI_options.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
apply_filter_dimension.html:50:1 (apply_filter_dimension.Rd:12): Warning: missing </ul> before </div>
apply_select_dimension.html:50:1 (apply_select_dimension.Rd:12): Warning: missing </ul> before </div>
apply_select_fact.html:50:1 (apply_select_fact.Rd:12): Warning: missing </ul> before </div>
group_facts.html:46:1 (group_facts.Rd:10): Warning: missing </ul> before </div>
remove_all_measures_na.html:50:1 (remove_all_measures_na.Rd:12): Warning: missing </ul> before </div>
remove_duplicate_dimension_rows.html:48:1 (remove_duplicate_dimension_rows.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rollbar.configure.html:54:1 (rollbar.configure.Rd:14): Warning: missing </ul> before </div>
rollbar.critical.html:50:1 (rollbar.critical.Rd:12): Warning: missing </ul> before </div>
rollbar.debug.html:50:1 (rollbar.debug.Rd:12): Warning: missing </ul> before </div>
rollbar.error.html:50:1 (rollbar.error.Rd:12): Warning: missing </ul> before </div>
rollbar.warning.html:50:1 (rollbar.warning.Rd:12): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Siqi Zhang [ctb], Russell Goldenberg [ctb] (The JS library inst/resources/scrollama/scrollama.min.js)’
  Authors@R: ‘Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Siqi Zhang [ctb], Russell Goldenberg [ctb] (The JS library inst/resources/scrollama/scrollama.min.js)’
Found the following HTML validation problems:
check_lookback.html:46:1 (check_lookback.Rd:10): Warning: missing </ul> before </div>
run_checks_one.html:62:1 (run_checks_one.Rd:18): Warning: missing </ul> before </div>
run_checks_two.html:62:1 (run_checks_two.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Found the following HTML validation problems:
loglikhresid.html:61:1 (loglikhresid.Rd:18): Warning: missing </ul> before </div>
summary.rologit.html:51:1 (summary.rologit.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Pingping Qu <quping14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pingping",
                      family = "Qu",
                      role = c("aut", "cre"),
                      email = "quping14@gmail.com"),
               person(given = "John",
                      family = "Crowley",
                      role = "aut"))
as necessary.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
checkRd: (-1) update_tidy_omic.Rd:16-17: Lost braces
    16 | in \code{updated_tidy_data} (names) and the table {features, samples,
       |                                                   ^
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Horner",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.
Maintainer: ‘Yoann Robin <yoann.robin.k@gmail.com>’

The Description field contains
  generator, see Mezzadri, F. (2007) <arXiv:math-ph/0609050>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bob Rudis <bob@rud.is>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Ruokun Huang <hruokun.2008@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ruokun",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "hruokun.2008@gmail.com")
as necessary.
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
Found the following HTML validation problems:
library.force.html:54:1 (library.force.Rd:15): Warning: missing </ul> before </div>
read.tsv.html:54:1 (read.tsv.Rd:15): Warning: missing </ul> before </div>
checkRd: (-1) read_ascii.Rd:33: Lost braces
    33 | \item{respondent_pattern}{For use when the file does not contain a line for every card for every respondent (or contains extra lines that correspond to no respondent), a regular expression that matches the file's respondent identifier; e.g., if the respondent number is stored in the first four digits of each line, preceded by a space, "(?<=^\\s)\\d{4}".}
       |                                                                                                                                                                                                                                                                                                                                                               ^
Found the following HTML validation problems:
plotrope.html:61:1 (plotrope.Rd:19): Warning: missing </ul> before </div>
symmetric.matrix2vector.html:48:1 (symmetric.matrix2vector.Rd:10): Warning: missing </ul> before </div>
vector2symmetric.matrix.html:47:1 (vector2symmetric.matrix.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Rajendra S. Pingte <rajendra.pingte@oracle.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Mukhin",
                      role = "aut"),
               person(given = c("David", "A."),
                      family = "James",
                      role = "aut"),
               person(given = "Jake",
                      family = "Luciani",
                      role = "aut"),
               person(given = c("Rajendra", "S."),
                      family = "Pingte",
                      role = "cre",
                      email = "rajendra.pingte@oracle.com"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Max Czapanskiy [aut, cre] (0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (<https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (<https://orcid.org/0000-0002-4170-7294>)’
  Authors@R: ‘Max Czapanskiy [aut, cre] (ORCID-ID: 0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (ORCID: <https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (ORCID: <https://orcid.org/0000-0002-4170-7294>)’
Maintainer: ‘Martin Wiegand <Martin.Wiegand@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Wiegand",
                    role = c("aut", "cre"),
                    email = "martin.wiegand@mrc-bsu.cam.ac.uk")
as necessary.

The Description field contains
  Wiegand and Nadarajah (2019) <arXiv:1903.09556>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nicola Lunardon <nicola.lunardon@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Lunardon",
                      role = c("aut", "cre"),
                      email = "nicola.lunardon@unimib.it"),
               person(given = "Giovanna",
                      family = "Menardi",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fanova.Rd: leveneTest, lmer, Anova
  formatPvalue.Rd: noZero, formatCI
  formatR.Rd: noZero, formatCI
  ggBoxplot.Rd: ggplot, geom_boxplot
  ggqq.Rd: ggplot
  oneway.Rd: leveneTest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
print.gemm.html:59:1 (print.gemm.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
file_formats.html:101:1 (file_formats.Rd:55): Warning: missing </ul> before </div>
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                ^
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                       ^
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                                  ^
Found the following HTML validation problems:
deprecated.html:223:1 (deprecated.Rd:167): Warning: missing </ul> before </div>
Found the following HTML validation problems:
RosvDownload.html:150:1 (RosvDownload.Rd:92): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:168:1 (RosvDownload.Rd:104): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:184:1 (RosvDownload.Rd:114): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:190:1 (RosvDownload.Rd:118): Warning: <h5> anchor "Arguments" already defined
RosvDownload.html:213:1 (RosvDownload.Rd:131): Warning: <h5> anchor "Usage" already defined
RosvDownload.html:219:1 (RosvDownload.Rd:135): Warning: <h5> anchor "Arguments" already defined
RosvQuery1.html:138:1 (RosvQuery1.Rd:83): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:155:1 (RosvQuery1.Rd:94): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:171:1 (RosvQuery1.Rd:104): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:177:1 (RosvQuery1.Rd:108): Warning: <h5> anchor "Arguments" already defined
RosvQuery1.html:200:1 (RosvQuery1.Rd:121): Warning: <h5> anchor "Usage" already defined
RosvQuery1.html:206:1 (RosvQuery1.Rd:125): Warning: <h5> anchor "Arguments" already defined
RosvQueryBatch.html:134:1 (RosvQueryBatch.Rd:86): Warning: <h5> anchor "Usage" already defined
RosvQueryBatch.html:150:1 (RosvQueryBatch.Rd:96): Warning: <h5> anchor "Usage" already defined
RosvQueryBatch.html:176:1 (RosvQueryBatch.Rd:113): Warning: <h5> anchor "Usage" already defined
RosvQueryBatch.html:182:1 (RosvQueryBatch.Rd:117): Warning: <h5> anchor "Arguments" already defined
RosvVulns.html:109:1 (RosvVulns.Rd:62): Warning: <h5> anchor "Usage" already defined
RosvVulns.html:125:1 (RosvVulns.Rd:72): Warning: <h5> anchor "Usage" already defined
RosvVulns.html:131:1 (RosvVulns.Rd:76): Warning: <h5> anchor "Arguments" already defined
RosvVulns.html:154:1 (RosvVulns.Rd:89): Warning: <h5> anchor "Usage" already defined
RosvVulns.html:160:1 (RosvVulns.Rd:93): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Michel Ballings <michel.ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
Arrow3D.html:60:1 (Arrow3D.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
suggest_new_fact.html:57:1 (suggest_new_fact.Rd:15): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:255:1 (inst/NEWS.Rd:141): Warning: missing </ul> before </div>
NEWS.html:40:1 (inst/NEWS.Rd:16): Warning: <h4> anchor "Misc" already defined
NEWS.html:88:1 (inst/NEWS.Rd:43): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:104:1 (inst/NEWS.Rd:52): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:120:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:136:1 (inst/NEWS.Rd:70): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:153:1 (inst/NEWS.Rd:80): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:170:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:197:1 (inst/NEWS.Rd:107): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:232:1 (inst/NEWS.Rd:128): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Marie Delacre <marie.delacre@ulb.ac.be>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Intention.Rd’:
    \keyword{Reminder,}
Found the following HTML validation problems:
config_tag_accepts_linters.html:51:1 (config_tag_accepts_linters.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
regex_capture.html:55:1 (regex_capture.Rd:14): Warning: missing </ul> before </div>
try_parse_typed.html:46:1 (try_parse_typed.Rd:10): Warning: missing </ul> before </div>
try_parse_typedreturn.html:46:1 (try_parse_typedreturn.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Adam Spannbauer <spannbaueradam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Spannbauer",
                    role = c("aut", "cre"),
                    email = "spannbaueradam@gmail.com")
as necessary.
Found the following HTML validation problems:
packed_bar_shiny.html:77:1 (packed_bar_shiny.Rd:31): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:184:1 (inst/NEWS.Rd:81): Warning: missing </ul> before </div>
NEWS.html:133:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "New-function" already defined
NEWS.html:142:1 (inst/NEWS.Rd:63): Warning: <h4> anchor "New-output" already defined
Maintainer: ‘Adrian Bowman <adrian.bowman@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Bowman",
                      role = "aut"),
               person(family = "Bowman",
                      role = "aut"),
               person(family = "Gibson",
                      role = "aut"),
               person(family = "Crawford",
                      role = "aut"),
               person(given = "Adrian",
                      family = "Bowman",
                      role = "cre",
                      email = "adrian.bowman@glasgow.ac.uk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Clyde.Rd:8: Lost braces
     8 | These data record the water quality, in terms of dissolved oxygen (\code{DO}) on a percentage scale, at a number of sampling stations (\code{Station}) on the River Clyde.  The date (\code{Day}, \\code{Month}, \code{Year}) is also available, along with the day of the year (\code{Doy} between 1 and 365) and an identified (\code{id}) of the survey on which each measurement was made.
       |                                                                                                                                                                                                         ^
checkRd: (-1) rp.pos.Rd:22-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:25-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:28-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:31-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:43: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephan",
                    family = "Dlugosz",
                    role = c("aut", "cre"),
                    email = "stephan.dlugosz@googlemail.com")
as necessary.
Maintainer: ‘Giuliano Galimberti <giuliano.galimberti@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Galimberti",
                      role = c("aut", "cre"),
                      email = "giuliano.galimberti@unibo.it"),
               person(given = "Gabriele",
                      family = "Soffritti",
                      role = "aut"),
               person(given = c("Matteo", "Di"),
                      family = "Maso",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel David Peris Diaz <madape@alumni.uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Manuel", "David", "Peris"),
                      family = "Diaz",
                      role = c("aut", "cre"),
                      email = "madape@alumni.uv.es"),
               person(given = c("Maria", "Isabel", "Alcoriza"),
                      family = "Balaguer",
                      role = "aut"))
as necessary.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Shengyu",
                      family = "Zhang",
                      role = "aut",
                      email = "syzhang@uw.edu"),
               person(given = "Douglas",
                      family = "Martin",
                      role = "aut",
                      email = "doug@amath.washington.edu"))
as necessary.
Maintainer: ‘Timothy I. Cannings <timothy.cannings@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "I."),
                      family = "Cannings",
                      role = c("aut", "cre"),
                      email = "timothy.cannings@ed.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Xin",
                      family = "Chen",
                      role = "aut",
                      email = "chenx26@uw.edu"))
as necessary.
Found the following HTML validation problems:
crosstabTest.html:55:1 (crosstabTest.Rd:14): Warning: missing </ul> before </div>
rpf.dTheta.html:59:1 (rpf.dTheta.Rd:19): Warning: missing </ul> before </div>
rpf.mean.info.html:58:1 (rpf.mean.info.Rd:14): Warning: missing </ul> before </div>
rpf.mean.info1.html:54:1 (rpf.mean.info1.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
anova.phylopars.lm.html:57:1 (anova.phylopars.lm.Rd:17): Warning: missing </ul> before </div>
logLik.phylopars.html:57:1 (logLik.phylopars.Rd:17): Warning: missing </ul> before </div>
logLik.phylopars.lm.html:57:1 (logLik.phylopars.lm.Rd:17): Warning: missing </ul> before </div>
print.SSC.html:57:1 (print.SSC.Rd:17): Warning: missing </ul> before </div>
print.phylopars.html:57:1 (print.phylopars.Rd:17): Warning: missing </ul> before </div>
print.phylopars.lm.html:57:1 (print.phylopars.lm.Rd:17): Warning: missing </ul> before </div>
summary.phylopars.html:57:1 (summary.phylopars.Rd:18): Warning: missing </ul> before </div>
summary.phylopars.lm.html:57:1 (summary.phylopars.lm.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot_phylopic.html:57:1 (plot_phylopic.Rd:18): Warning: missing </ul> before </div>
scales.html:170:1 (scales.Rd:93): Warning: missing </ul> before </div>
Maintainer: ‘Colin FAY <contact@colinfay.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Colin",
                    family = "FAY",
                    role = c("aut", "cre"),
                    email = "contact@colinfay.me")
as necessary.
checkRd: (-1) rpivotTable.Rd:60: Lost braces; missing escapes or markup?
    60 | An example is: onRefresh=htmlwidgets::JS("function(config) { Shiny.onInputChange('myPivotData', config); }")
       |                                                            ^
Maintainer: ‘Peter Filzmoser <peter.filzmoser@tuwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Filzmoser",
                      role = c("aut", "cre"),
                      email = "peter.filzmoser@tuwien.ac.at"),
               person(given = "Sukru",
                      family = "Acitas",
                      role = "aut"),
               person(given = "Birdal",
                      family = "Senoglu",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Plattner",
                      role = "aut"))
as necessary.
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Devin", "C."),
                      family = "Koestler",
                      role = "aut"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
checkRd: (-1) plotImage.blcTree.Rd:17: Lost braces
    17 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
checkRd: (-1) plotImage.glcTree.Rd:16: Lost braces
    16 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
Found the following significant warnings:
  rowwise_imax_idx.cpp:17:18: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  rowwise_max_idx.cpp:17:18: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rpm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following HTML validation problems:
print.rpms.html:51:1 (print.rpms.Rd:12): Warning: missing </ul> before </div>
print.rpms_zinf.html:51:1 (print.rpms_zinf.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Sascha Herrmann <sascha.herrmann.consulting@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sascha",
                    family = "Herrmann",
                    role = c("aut", "cre"),
                    email = "sascha.herrmann.consulting@gmail.com")
as necessary.
Found the following HTML validation problems:
box2lower.html:54:1 (box2lower.Rd:14): Warning: missing </ul> before </div>
box2upper.html:54:1 (box2upper.Rd:14): Warning: missing </ul> before </div>
bp.signalprocessor.html:46:1 (bp.signalprocessor.Rd:10): Warning: missing </ul> before </div>
currentVPOBreakoutMethod.html:60:1 (currentVPOBreakoutMethod.Rd:17): Warning: missing </ul> before </div>
currentVPOReversalMethod.html:60:1 (currentVPOReversalMethod.Rd:17): Warning: missing </ul> before </div>
doubleBottom.html:50:1 (doubleBottom.Rd:12): Warning: missing </ul> before </div>
doubleTop.html:50:1 (doubleTop.Rd:12): Warning: missing </ul> before </div>
fallingBottom.html:50:1 (fallingBottom.Rd:12): Warning: missing </ul> before </div>
fallingTop.html:50:1 (fallingTop.Rd:12): Warning: missing </ul> before </div>
maxBox.html:50:1 (maxBox.Rd:12): Warning: missing </ul> before </div>
minBox.html:50:1 (minBox.Rd:12): Warning: missing </ul> before </div>
nextBox.html:58:1 (nextBox.Rd:16): Warning: missing </ul> before </div>
nextReversal.html:62:1 (nextReversal.Rd:18): Warning: missing </ul> before </div>
raisingBottom.html:50:1 (raisingBottom.Rd:12): Warning: missing </ul> before </div>
raisingTop.html:50:1 (raisingTop.Rd:12): Warning: missing </ul> before </div>
signalanalyzer.html:50:1 (signalanalyzer.Rd:12): Warning: missing </ul> before </div>
xo.priceobjective.processor.html:64:1 (xo.priceobjective.processor.Rd:17): Warning: missing </ul> before </div>
xo.processor.html:68:1 (xo.processor.Rd:21): Warning: missing </ul> before </div>
xo.signalprocessor.html:50:1 (xo.signalprocessor.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Aaron Schlegel <aaron@aaronschlegel.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Schlegel",
                    role = c("aut", "cre"),
                    email = "aaron@aaronschlegel.me")
as necessary.
checkRd: (-1) get.poetry.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{output}{Can be any or a combination of the input terms {'author', 'title', 'lines', 'linecount'}. If NULL, all
       |                                                              ^
Found the following HTML validation problems:
bs.html:50:1 (bs.Rd:12): Warning: missing </ul> before </div>
dbConnCheck.html:46:1 (dbConnCheck.Rd:10): Warning: missing </ul> before </div>
dbExistsTable.html:50:1 (dbExistsTable.Rd:12): Warning: missing </ul> before </div>
dbGetDefs.html:50:1 (dbGetDefs.Rd:12): Warning: missing </ul> before </div>
pgCheckGeom.html:56:1 (pgCheckGeom.Rd:15): Warning: missing </ul> before </div>
pgGetGeomQ.html:57:1 (pgGetGeomQ.Rd:17): Warning: missing </ul> before </div>
pgGetSRID.html:54:1 (pgGetSRID.Rd:14): Warning: missing </ul> before </div>
warn_deprecated_rc.html:50:1 (warn_deprecated_rc.Rd:12): Warning: missing </ul> before </div>
warn_deprecated_sp.html:50:1 (warn_deprecated_sp.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Redshift.html:117:1 (Redshift.Rd:67): Warning: missing </ul> before </div>
dbDataType.html:54:1 (dbDataType.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = c("aut", "cre"),
                      email = "lafaye@unsw.edu.au"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"),
               person(given = "Jeremie",
                      family = "Riou",
                      role = "aut"))
as necessary.
Maintainer: ‘Torsten Schoeps <torsten.schoeps@bioinf.med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Heiko", "Mannsperger", "with", "contributions", "of", "Stephan"),
                      family = "Gade",
                      role = "aut"),
               person(given = "Torsten",
                      family = "Schoeps",
                      role = "cre",
                      email = "torsten.schoeps@bioinf.med.uni-goettingen.de"))
as necessary.
Maintainer: ‘Tomas Boril <borilt@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) as.tg.Rd:18: Lost braces; missing escapes or markup?
    18 | Renames the \code{class(tg)["name"]} attribute and sets {class(tg)["type"] <- "TextGrid"} (if it is not already set)
       |                                                         ^
Found the following HTML validation problems:
PrestoConnection-class.html:264:1 (PrestoConnection-class.Rd:203): Warning: missing </ul> before </div>
dbCreateTableAs.html:82:1 (dbCreateTableAs.Rd:29): Warning: missing </ul> before </div>
dbRenameTable.html:58:1 (dbRenameTable.Rd:16): Warning: missing </ul> before </div>
dbplyr-db.html:140:1 (dbplyr-db.Rd:83): Warning: missing </ul> before </div>
dbplyr-sql.html:85:1 (dbplyr-sql.Rd:31): Warning: missing </ul> before </div>
dbplyr_edition.PrestoConnection.html:47:1 (dbplyr_edition.PrestoConnection.Rd:10): Warning: missing </ul> before </div>
dplyr_function_implementations.html:83:1 (dplyr_function_implementations.Rd:32): Warning: missing </ul> before </div>
sqlCreateTableAs.html:77:1 (sqlCreateTableAs.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
Maintainer: ‘Miguel Conde <miguelco2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miguel",
                    family = "Conde",
                    role = c("aut", "cre"),
                    email = "miguelco2000@gmail.com")
as necessary.
checkRd: (-1) check_node.Rd:11: Lost braces
    11 | \item{x}{\\code{list}, the node to check}
       |                ^
Found the following HTML validation problems:
print.rpsftm.coxph.html:55:1 (print.rpsftm.coxph.Rd:14): Warning: missing </ul> before </div>
print.rpsftm.summary.coxph.html:64:1 (print.rpsftm.summary.coxph.Rd:21): Warning: missing </ul> before </div>
print.rpsftm.summary.survreg.html:55:1 (print.rpsftm.summary.survreg.Rd:14): Warning: missing </ul> before </div>
print.rpsftm.survreg.html:51:1 (print.rpsftm.survreg.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LRT_nongaussian.html:62:1 (LRT_nongaussian.Rd:18): Warning: missing </ul> before </div>
bootstrap_nongaussian.html:105:1 (bootstrap_nongaussian.Rd:47): Warning: missing </ul> before </div>
group_vars.html:56:1 (group_vars.Rd:15): Warning: missing </ul> before </div>
permut_nongaussian.html:105:1 (permut_nongaussian.Rd:47): Warning: missing </ul> before </div>
with_warnings.html:48:1 (with_warnings.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
ex_data_table_step.default.html:74:1 (ex_data_table_step.default.Rd:27): Warning: missing </ul> before </div>
checkRd: (-1) ex.Rd:20: Lost braces
    20 | Execute a ops-dag using `code{wrap()}` data as values.
       |                              ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                          ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                                                   ^
checkRd: (-1) R2_lik.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{R2_lik()} is also computed for LMMs and GLMMs in the {MuMIn} package.
       |                                                            ^
checkRd: (-1) R2_pred.Rd:32: Lost braces; missing escapes or markup?
    32 | Note that the version of \code{binaryPGLMM()} in the package ape is replaced by a version contained within {rr2} that outputs all of the required information for the calculation of R2_resid.
       |                                                                                                            ^
checkRd: (-1) R2_resid.Rd:69: Lost braces; missing escapes or markup?
    69 | Note that the version of \code{binaryPGLMM()} in the package ape is replaced by a version contained within {rr2} that outputs all of the required information for the calculation of \code{R2_resid()}
       |                                                                                                            ^
Found the following HTML validation problems:
inv.logit.html:46:1 (inv.logit.Rd:10): Warning: missing </ul> before </div>
File ‘rrapply/libs/rrapply.so’:
  Found non-API calls to R: ‘Rf_isValidString’, ‘Rf_lazy_duplicate’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Wei Jiang <wjiangaa@connect.ust.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "wjiangaa@connect.ust.hk"),
               person(given = "Jing-Hao",
                      family = "Xue",
                      role = "aut"),
               person(given = "Weichuan",
                      family = "Yu",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘HL_H0.pdf’ ‘pi0infer.pdf’ ‘rate.txt’ ‘summary.txt’
Maintainer: ‘Yi He <yi.he@stats.oxon.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "yi.he@stats.oxon.org"),
               person(given = "Yuelin",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Jeffrey Endelman <endelman@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Endelman",
                    role = c("aut", "cre"),
                    email = "endelman@wisc.edu")
as necessary.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Maintainer: ‘Ludovik Çoba <Ludovik.Coba@inf.unibz.it>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rrecsys.Rd’:
    http://dx.doi.org/10.1109/MC.2009.263
checkRd: (-1) rrecsys.Rd:72: Lost braces; missing escapes or markup?
    72 |  The average deviation rating $dev_{ij}$ between co-rated items is defined by:
       |                                    ^
checkRd: (-1) rrecsys.Rd:76: Lost braces; missing escapes or markup?
    76 |  Where $c_{ij}$ is the number of co-ratings between items $i$ and $j$ and $r_{ui}$ is an existing rating for user $u$ on item $i$. The Weighted Slope One takes into account both, information from users who rated the same item and the number of observed ratings.
       |           ^
checkRd: (-1) rrecsys.Rd:76: Lost braces; missing escapes or markup?
    76 |  Where $c_{ij}$ is the number of co-ratings between items $i$ and $j$ and $r_{ui}$ is an existing rating for user $u$ on item $i$. The Weighted Slope One takes into account both, information from users who rated the same item and the number of observed ratings.
       |                                                                              ^
Found the following HTML validation problems:
histogram.html:68:1 (histogram.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Michael Treadwell <michael.treadwell@interworks.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Treadwell",
                    role = c("aut", "cre"),
                    email = "michael.treadwell@interworks.com")
as necessary.
checkRd: (-1) lateformeeting.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) regrad.Rd:46: Lost braces; missing escapes or markup?
    46 |  \item \code{x-axis} {1st column: The names of the different institutions}
       |                      ^
checkRd: (-1) regrad.Rd:47: Lost braces; missing escapes or markup?
    47 |  \item \code{y-axis} {2nd column: The value to show completeness}
       |                      ^
Found the following HTML validation problems:
AddResults.html:48:1 (AddResults.Rd:10): Warning: missing </ul> before </div>
Easy.Run.html:63:1 (Easy.Run.Rd:18): Warning: missing </ul> before </div>
Engine.Finish.html:47:1 (Engine.Finish.Rd:10): Warning: missing </ul> before </div>
Engine.RunModel.html:46:1 (Engine.RunModel.Rd:10): Warning: missing </ul> before </div>
Engine.endAt.html:51:1 (Engine.endAt.Rd:12): Warning: missing </ul> before </div>
Engine.getId.html:48:1 (Engine.getId.Rd:10): Warning: missing </ul> before </div>
Engine.resetModelOutput.html:46:1 (Engine.resetModelOutput.Rd:10): Warning: missing </ul> before </div>
Engine.setParameter.html:54:1 (Engine.setParameter.Rd:14): Warning: missing </ul> before </div>
PB.init.html:51:1 (PB.init.Rd:12): Warning: missing </ul> before </div>
PB.pset.html:46:1 (PB.pset.Rd:10): Warning: missing </ul> before </div>
PB.rnum.html:46:1 (PB.rnum.Rd:10): Warning: missing </ul> before </div>
PB.set.html:46:1 (PB.set.Rd:10): Warning: missing </ul> before </div>
PB.update.html:46:1 (PB.update.Rd:10): Warning: missing </ul> before </div>
SetResults.html:46:1 (SetResults.Rd:10): Warning: missing </ul> before </div>
SetResultsParameters.html:47:1 (SetResultsParameters.Rd:10): Warning: missing </ul> before </div>
SetSimulationParameter.html:54:1 (SetSimulationParameter.Rd:14): Warning: missing </ul> before </div>
SetSimulationParameters.html:52:1 (SetSimulationParameters.Rd:12): Warning: missing </ul> before </div>
setId.html:46:1 (setId.Rd:10): Warning: missing </ul> before </div>
setKeyRandom.html:47:1 (setKeyRandom.Rd:10): Warning: missing </ul> before </div>
setOutputDir.html:47:1 (setOutputDir.Rd:10): Warning: missing </ul> before </div>
setpkgcores.html:46:1 (setpkgcores.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Bowen Wang <bowenwang7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bowen",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "bowenwang7@gmail.com")
as necessary.
Maintainer: ‘Houtao Deng <softwaredeng@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Panos Toulis <panos.toulis@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panos",
                    family = "Toulis",
                    role = c("aut", "cre"),
                    email = "panos.toulis@chicagobooth.edu")
as necessary.
checkRd: (-1) rrinf_clust.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}. See \link{example_clustering} for details.}
       |                                                                                  ^
checkRd: (-1) rrtest_clust.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}.
       |                                                                                  ^
Found the following HTML validation problems:
check_model.html:46:1 (check_model.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Matthias Greiner <matthias.greiner@bfr.bund.de>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rriskDistributions-package.Rd’:
    \concept{
      Beta, Normal, Lognormal, Cauhy, Chi-Quad [TRUNCATED]
Found the following HTML validation problems:
plot.html:146:1 (plot.Rd:76): Warning: missing </ul> before </div>
summary.html:64:1 (summary.Rd:24): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sort_tips.Rd’ ‘sort_tips.r’ ‘tips.r’ ‘validate_rankedPhylo.r’
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rrpack.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) mrrr.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:71-72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:74: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
summary.html:78:1 (summary.Rd:40): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.powerplot.html:51:1 (plot.powerplot.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Gregory Hunt <ghunt@wm.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
center.html:46:1 (center.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Beatriz Cobo Rodríguez <beacr@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Beatriz", "Cobo"),
                      family = "Rodríguez",
                      role = c("aut", "cre"),
                      email = "beacr@ugr.es"),
               person(given = c("María", "del", "Mar", "Rueda"),
                      family = "García",
                      role = "aut"),
               person(given = c("Antonio", "Arcos"),
                      family = "Cebrián",
                      role = "aut"))
as necessary.
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CART_Dummy.Rd’:
    \keyword{CART, partitions}
  File ‘CT.Rd’:
    \keyword{smoothing, hanning}
  File ‘GC.Rd’:
    \keyword{Logistic Regression, Credit data}
  File ‘octane.Rd’:
    \keyword{Histogram, Stem-and-leaf plots}
Found the following HTML validation problems:
check_output_format.html:62:1 (check_output_format.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rsample-dplyr.html:144:1 (rsample-dplyr.Rd:64): Warning: missing </ul> before </div>
Maintainer: ‘Paulo Prado <prado@ib.usp.br>’

The Description field contains
  Resampling Stats (http://www.resample.com) is an add-in for running
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
splot.html:63:1 (splot.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-sampling_defaults.html:55:1 (dot-sampling_defaults.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fitted.RSA.html:55:1 (fitted.RSA.Rd:14): Warning: missing </ul> before </div>
residuals.RSA.html:55:1 (residuals.RSA.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Xiuquan (Xander) Wang <xiuquan.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiuquan",
                      family = "Wang",
                      role = "aut",
                      comment = "Xander"),
               person(given = "Xiuquan",
                      family = "Wang",
                      role = "cre",
                      email = "xiuquan.wang@gmail.com",
                      comment = "Xander"))
as necessary.
checkRd: (-1) rSCA.modeling.Rd:61: Lost braces; missing escapes or markup?
    61 |                 a predefined string to specify how the information of leaf nodes will be stored in the map file. A full list of options for mapvalue is: {mean, max, min, median, interval, radius, variation, random}. Default value is "mean". Use "interval" to get an interval bounded by the minimum and maximum values, (i.e., [min, max]). The option of "radius" will output the mean and the radius [i.e., (max - min) / 2] at the same time. Use "variation" to output the mean and the standard deviation. The option of "random" will output the information as an interval like the "interval" option, but it will use a random value within the interval as the predicted value.
       |                                                                                                                                                          ^
Found the following HTML validation problems:
result2CSV.html:51:1 (result2CSV.Rd:13): Warning: missing </ul> before </div>
shinyAppServer.html:52:1 (shinyAppServer.Rd:14): Warning: missing </ul> before </div>
summary-SimResult-method.html:48:1 (summary-SimResult-method.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
tree.plot.html:50:1 (tree.plot.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
File ‘RSclient/libs/RSclient.so’:
  Found non-API calls to R: ‘BODY’, ‘EXTPTR_PTR’, ‘FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
RCC.html:316:1 (RCC.Rd:228): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Sai Chimata <schimata@yotabitesllc.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sai",
                    family = "Chimata",
                    role = c("aut", "cre"),
                    email = "schimata@yotabitesllc.com")
as necessary.
Found the following HTML validation problems:
addConnectServer.html:62:1 (addConnectServer.Rd:18): Warning: missing </ul> before </div>
authorizedUsers.html:47:1 (authorizedUsers.Rd:11): Warning: missing </ul> before </div>
connectSPCSUser.html:69:1 (connectSPCSUser.Rd:23): Warning: missing </ul> before </div>
lint.html:57:1 (lint.Rd:16): Warning: missing </ul> before </div>
makeLinterMessage.html:55:1 (makeLinterMessage.Rd:14): Warning: missing </ul> before </div>
showMetrics.html:103:1 (showMetrics.Rd:52): Warning: missing </ul> before </div>
syncAppMetadata.html:48:1 (syncAppMetadata.Rd:10): Warning: missing </ul> before </div>
writeManifest.html:173:1 (writeManifest.Rd:104): Warning: missing </ul> before </div>
Found the following HTML validation problems:
set_api_key.html:47:1 (set_api_key.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mudassir Shabbir <mudassir.shabbir@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mudassir",
                      family = "Shabbir",
                      role = c("aut", "cre"),
                      email = "mudassir.shabbir@gmail.com"),
               person(given = "Nabil",
                      family = "Mustafa",
                      role = "aut"),
               person(given = "Saurabh",
                      family = "Ray",
                      role = "aut"))
as necessary.
Maintainer: ‘EL KHMISSI Mohamed <mohamed.el-khmissi01@etu.umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("EL", "KHMISSI"),
                    family = "Mohamed",
                    role = c("aut", "cre"),
                    email = "mohamed.el-khmissi01@etu.umontpellier.fr")
as necessary.
Found the following HTML validation problems:
SDMXStructureType-methods.html:49:1 (SDMXStructureType-methods.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mitra",
                    family = "Ebrahimpoor",
                    role = c("aut", "cre"),
                    email = "mitra.ebrahimpoor@gmail.com")
as necessary.
Found the following HTML validation problems:
doMYBUTTS.html:55:1 (doMYBUTTS.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) remoteDriver-class.Rd:39-40: Lost braces
    39 | browser being used; should be one of {chrome|firefox|htmlunit|
       |                                      ^
checkRd: (-1) remoteDriver-class.Rd:50: Lost braces; missing escapes or markup?
    50 | of {WINDOWS|XP|VISTA|MAC|LINUX|UNIX}. When requesting a new session,
       |    ^
checkRd: (-1) remoteDriver-class.Rd:194-196: Lost braces
   194 |   element, available schemes: {"class name", "css selector",
       |                               ^
checkRd: (-1) webElement-class.Rd:50-52: Lost braces
    50 |     element, available schemes: {"class name", "css selector",
       |                                 ^
checkRd: (-1) webElement-class.Rd:67-69: Lost braces
    67 |     element, available schemes: {"class name", "css selector",
       |                                 ^
'library' or 'require' call not declared from: ‘selectr’
Maintainer: ‘Zhiyong Zhang <zhiyongzhang@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ke-Hai",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhiyongzhang@nd.edu"))
as necessary.
Found the following HTML validation problems:
rsem.index.html:52:1 (rsem.index.Rd:15): Warning: missing </ul> before </div>
rsem.indexv.html:52:1 (rsem.indexv.Rd:15): Warning: missing </ul> before </div>
rsem.indexvc.html:52:1 (rsem.indexvc.Rd:15): Warning: missing </ul> before </div>
rsem.switch.html:48:1 (rsem.switch.Rd:14): Warning: missing </ul> before </div>
semdiag.combinations.html:49:1 (semdiag.combinations.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Subhasree", "Bose", "with", "contributons", "from", "Saptarsi"),
                      family = "Goswami.",
                      role = "aut",
                      email = "subhasree10.7@gmail.com"),
               person(given = "Subhasree",
                      family = "Bose",
                      role = "cre",
                      email = "subhasree10.7@gmail.com"))
as necessary.
Maintainer: ‘Youhua Chen <haydi@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Youhua", "Chen,Tsung-Jen"),
                      family = "Shen",
                      role = "aut"),
               person(given = "Youhua",
                      family = "Chen",
                      role = "cre",
                      email = "haydi@126.com"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

Package has FOSS license, installs .class/.jar but has no 'java' directory.

The BugReports field in DESCRIPTION has
  https://github.com/s-u/Rserve
which should likely be
  https://github.com/s-u/Rserve/issues
instead.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rserve/libs/Rserve.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
  Found ‘rand’, possibly from ‘rand’ (C)
  Found ‘random’, possibly from ‘random’ (C)
  Found ‘srandom’, possibly from ‘srandom’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
File ‘Rserve/libs/Rserve.so’:
  Found non-API calls to R: ‘BODY’, ‘FORMALS’, ‘R_Consolefile’,
    ‘R_Outputfile’, ‘R_TempDir’, ‘R_Visible’, ‘R_curErrorBuf’,
    ‘ptr_R_Busy’, ‘ptr_R_ClearerrConsole’, ‘ptr_R_FlushConsole’,
    ‘ptr_R_ReadConsole’, ‘ptr_R_ResetConsole’, ‘ptr_R_ShowMessage’,
    ‘ptr_R_WriteConsole’, ‘ptr_R_WriteConsoleEx’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Martin Zaefferer <martin.zaefferer@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Konen",
                      role = "aut",
                      email = "wolfgang.konen@fh-koeln.de"),
               person(given = "Martin",
                      family = "Zaefferer",
                      role = c("aut", "cre"),
                      email = "martin.zaefferer@gmx.de"),
               person(given = c("Patrick", "Koch;", "Bug"),
                      family = "hunting",
                      role = "aut"),
               person(given = c("testing", "by", "Ayodele"),
                      family = "Fasika",
                      role = "aut"),
               person(given = "Ashwin",
                      family = "Kumar",
                      role = "aut"),
               person(given = "Prawyn",
                      family = "Jebakumar",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
sfaCheckCondition.html:50:1 (sfaCheckCondition.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Maintainer: ‘Jonathan Dench <jdenc017@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Dench",
                    role = c("aut", "cre"),
                    email = "jdenc017@gmail.com")
as necessary.
Found the following HTML validation problems:
rust_regime_means.html:50:1 (rust_regime_means.Rd:12): Warning: missing </ul> before </div>
rust_rodionov.html:54:1 (rust_rodionov.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.multisimsum.html:46:1 (is.multisimsum.Rd:10): Warning: missing </ul> before </div>
is.simsum.html:46:1 (is.simsum.Rd:10): Warning: missing </ul> before </div>
is.summary.multisimsum.html:46:1 (is.summary.multisimsum.Rd:10): Warning: missing </ul> before </div>
is.summary.simsum.html:46:1 (is.summary.simsum.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_indices.Rd’ ‘get_stac_data.R’ ‘get_stac_data.Rd’
    ‘landsat_mask_function.Rd’
Maintainer: ‘Yumi Kondo <y.kondo@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yumi",
                    family = "Kondo",
                    role = c("aut", "cre"),
                    email = "y.kondo@stat.ubc.ca")
as necessary.
Found the following HTML validation problems:
apply_rules.html:55:1 (apply_rules.Rd:15): Warning: missing </ul> before </div>
extract_raw_rules.html:46:1 (extract_raw_rules.Rd:10): Warning: missing </ul> before </div>
extract_replacement_rules.html:46:1 (extract_replacement_rules.Rd:10): Warning: missing </ul> before </div>
extract_rule_info.html:46:1 (extract_rule_info.Rd:10): Warning: missing </ul> before </div>
extract_rules.html:51:1 (extract_rules.Rd:10): Warning: missing </ul> before </div>
extract_rules_info.html:46:1 (extract_rules_info.Rd:10): Warning: missing </ul> before </div>
remove_accents.html:46:1 (remove_accents.Rd:10): Warning: missing </ul> before </div>
rslp_.html:53:1 (rslp_.Rd:15): Warning: missing </ul> before </div>
verify_sufix.html:51:1 (verify_sufix.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Maintainer: ‘Paul F. Petrowski <pfpetrowski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "F."),
                    family = "Petrowski",
                    role = c("aut", "cre"),
                    email = "pfpetrowski@gmail.com")
as necessary.
'library' or 'require' call not declared from: ‘plot3D’
Found the following HTML validation problems:
SnnsRObject-initializeNet.html:53:1 (SnnsRObject-initializeNet.Rd:14): Warning: missing </ul> before </div>
SnnsRObject-setUnitDefaults.html:75:1 (SnnsRObject-setUnitDefaults.Rd:24): Warning: missing </ul> before </div>
exportToSnnsNetFile.html:55:1 (exportToSnnsNetFile.Rd:14): Warning: missing </ul> before </div>
inputColumns.html:47:1 (inputColumns.Rd:10): Warning: missing </ul> before </div>
outputColumns.html:47:1 (outputColumns.Rd:10): Warning: missing </ul> before </div>
plotRegressionError.html:57:1 (plotRegressionError.Rd:14): Warning: missing </ul> before </div>
print.rsnns.html:51:1 (print.rsnns.Rd:12): Warning: missing </ul> before </div>
savePatFile.html:55:1 (savePatFile.Rd:14): Warning: missing </ul> before </div>
setSnnsRSeedValue.html:46:1 (setSnnsRSeedValue.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
query_fb_marketing_api.html:109:1 (query_fb_marketing_api.Rd:69): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:120:1 (query_fb_marketing_api.Rd:75): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:135:1 (query_fb_marketing_api.Rd:83): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:206:1 (query_fb_marketing_api.Rd:118): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:265:1 (query_fb_marketing_api.Rd:148): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:304:1 (query_fb_marketing_api.Rd:167): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:315:1 (query_fb_marketing_api.Rd:173): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:334:1 (query_fb_marketing_api.Rd:183): Warning: <h4> anchor "----------" already defined
query_fb_marketing_api.html:353:1 (query_fb_marketing_api.Rd:193): Warning: <h4> anchor "----------" already defined
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Gabe",
                      family = "Becker",
                      role = "aut"),
               person(given = "Jan",
                      family = "Vogel",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Found the following HTML validation problems:
bru_get_mapper.inla_rspde_anisotropic2d.html:50:1 (bru_get_mapper.inla_rspde_anisotropic2d.Rd:12): Warning: missing </ul> before </div>
bru_get_mapper.inla_rspde_fintrinsic.html:50:1 (bru_get_mapper.inla_rspde_fintrinsic.Rd:12): Warning: missing </ul> before </div>
bru_get_mapper.inla_rspde_matern1d.html:64:1 (bru_get_mapper.inla_rspde_matern1d.Rd:25): Warning: missing </ul> before </div>
bru_get_mapper.inla_rspde_spacetime.html:50:1 (bru_get_mapper.inla_rspde_spacetime.Rd:12): Warning: missing </ul> before </div>
summary.intrinsicCBrSPDEobj.html:63:1 (summary.intrinsicCBrSPDEobj.Rd:22): Warning: missing </ul> before </div>
summary.rSPDEobj.html:64:1 (summary.rSPDEobj.Rd:23): Warning: missing </ul> before </div>
summary.rSPDEobj1d.html:63:1 (summary.rSPDEobj1d.Rd:22): Warning: missing </ul> before </div>
summary.spacetimeobj.html:63:1 (summary.spacetimeobj.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Anatoly Sorokin <lptolik@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/rSpectral.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rSpectral.Rd: igraph
  spectral_igraph_communities.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Theodore Lytras <thlytras@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Theodore",
                    family = "Lytras",
                    role = c("aut", "cre"),
                    email = "thlytras@gmail.com")
as necessary.
Maintainer: ‘Tiago Mendes Dantas <t.mendesdantas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tiago", "Mendes"),
                    family = "Dantas",
                    role = c("aut", "cre"),
                    email = "t.mendesdantas@gmail.com")
as necessary.
Found the following HTML validation problems:
getFeatures.html:50:1 (getFeatures.Rd:12): Warning: missing </ul> before </div>
getPlaylistSongs.html:58:1 (getPlaylistSongs.Rd:16): Warning: missing </ul> before </div>
getRelated.html:50:1 (getRelated.Rd:12): Warning: missing </ul> before </div>
getTopTracks.html:54:1 (getTopTracks.Rd:14): Warning: missing </ul> before </div>
getTrack.html:50:1 (getTrack.Rd:12): Warning: missing </ul> before </div>
searchPlaylist.html:54:1 (searchPlaylist.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Melina Vidoni <melinavidoni@santafe-conicet.gov.ar>’

Found the following (possibly) invalid file URIs:
  URI: reference/get_shortest_path.html
    From: inst/doc/igraph.html
  URI: reference/index.html
    From: inst/doc/rsppfp.html
  URI: reference/direct_graph.html
    From: inst/doc/rsppfp.html
  URI: reference/parse_vpath.html
    From: inst/doc/rsppfp.html
  URI: articles/benchmark.html
    From: README.md
  URI: articles/references.html
    From: README.md

Found the following URLs which should use \doi (with the DOI name only):
  File ‘modify_graph_hsu.Rd’:
    https://doi.org/10.1007/978-3-642-03095-6_60
  File ‘modify_graph_vd.Rd’:
    https://doi.org/10.1016/j.ejor.2004.01.032
Found the following HTML validation problems:
dbBeginTransaction.html:50:1 (dbBeginTransaction.Rd:12): Warning: missing </ul> before </div>
query-dep.html:68:1 (query-dep.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhasree",
                    family = "Bose",
                    role = c("aut", "cre"),
                    email = "subhasree10.7@gmail.com")
as necessary.
Maintainer: ‘Busra Sevinc <busra.sevincc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Busra",
                      family = "Sevinc",
                      role = c("aut", "cre"),
                      email = "busra.sevincc@gmail.com"),
               person(given = "Bekir",
                      family = "Cetintav",
                      role = "aut"),
               person(given = "Melek",
                      family = "Esemen",
                      role = "aut"),
               person(given = "Selma",
                      family = "Gurler",
                      role = "aut"))
as necessary.
Maintainer: ‘Jesse Krijthe <jkrijthe@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/jkrijthe/RSSL
which should likely be
  https://github.com/jkrijthe/RSSL/issues
instead.
Found the following significant warnings:
  utils.cpp:31:14: warning: 'max' is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RSSL.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = c("aut", "cre"),
                      email = "rezgararabzadeh@ut.ac.ir"),
               person(given = "Parisa",
                      family = "Aberi",
                      role = "aut"),
               person(given = "Kaveh",
                      family = "Panaghi",
                      role = "aut"),
               person(given = "Shahab",
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Majid",
                      family = "Montaseri",
                      role = "aut"))
as necessary.
Maintainer: ‘Shawn T. O'Neil <shawn.oneil@cgrb.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Shawn", "T."),
                    family = "O'Neil",
                    role = c("aut", "cre"),
                    email = "shawn.oneil@cgrb.oregonstate.edu")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom-funs.R’
Found the following HTML validation problems:
family.stanmvreg.html:51:1 (family.stanmvreg.Rd:12): Warning: missing </ul> before </div>
family.stanreg.html:47:1 (family.stanreg.Rd:10): Warning: missing </ul> before </div>
formula.stanreg.html:52:1 (formula.stanreg.Rd:13): Warning: missing </ul> before </div>
model.frame.stanmvreg.html:55:1 (model.frame.stanmvreg.Rd:14): Warning: missing </ul> before </div>
model.frame.stanreg.html:51:1 (model.frame.stanreg.Rd:12): Warning: missing </ul> before </div>
model.matrix.stanreg.html:47:1 (model.matrix.stanreg.Rd:10): Warning: missing </ul> before </div>
print.survfit.stanjm.html:57:1 (print.survfit.stanjm.Rd:16): Warning: missing </ul> before </div>
rstanarm-deprecated.html:79:1 (rstanarm-deprecated.Rd:37): Warning: missing </ul> before </div>
terms.stanmvreg.html:51:1 (terms.stanmvreg.Rd:12): Warning: missing </ul> before </div>
terms.stanreg.html:47:1 (terms.stanreg.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
stanemax-methods.html:88:1 (stanemax-methods.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
nsamples.html:51:1 (nsamples.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Xuehui YANG <jianghang@bagualu.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuehui",
                    family = "YANG",
                    role = c("aut", "cre"),
                    email = "jianghang@bagualu.net")
as necessary.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"),
               person(given = "Alexander",
                      family = "Franks",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
tr.html:46:1 (tr.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
eform.html:86:1 (eform.Rd:37): Warning: missing </ul> before </div>
gsm.control.html:174:1 (gsm.control.Rd:83): Warning: missing </ul> before </div>
lines.html:129:1 (lines.Rd:50): Warning: missing </ul> before </div>
rstpm2-internal.html:59:1 (rstpm2-internal.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Leydold",
                    role = c("aut", "cre"),
                    email = "josef.leydold@wu.ac.at")
as necessary.
Found the following HTML validation problems:
createProjectTemplate.html:101:1 (createProjectTemplate.Rd:47): Warning: missing </ul> before </div>
document_position.html:59:1 (document_position.Rd:20): Warning: missing </ul> before </div>
filesPaneNavigate.html:47:1 (filesPaneNavigate.Rd:10): Warning: missing </ul> before </div>
primary_selection.html:53:1 (primary_selection.Rd:12): Warning: missing </ul> before </div>
selections.html:54:1 (selections.Rd:17): Warning: missing </ul> before </div>
setGhostText.html:49:1 (setGhostText.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Martin Atzmueller <martin@atzmueller.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Atzmueller",
                    role = c("aut", "cre"),
                    email = "martin@atzmueller.net")
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Found the following HTML validation problems:
perturb.nu.vector.html:52:1 (perturb.nu.vector.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Rohan Sadler <rohan.sadler@ausvet.com.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Evan",
                      family = "Sergeant",
                      role = "aut"),
               person(given = "Rohan",
                      family = "Sadler",
                      role = "cre",
                      email = "rohan.sadler@ausvet.com.au"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lp.Rd’
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kasper",
                      family = "Welbers",
                      role = c("aut", "cre"),
                      email = "kasperwelbers@gmail.com"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Johan Jordaan <djjordaan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johan",
                    family = "Jordaan",
                    role = c("aut", "cre"),
                    email = "djjordaan@gmail.com")
as necessary.
Maintainer: ‘Haydar Demirhan <haydar.demirhan@rmit.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haydar",
                    family = "Demirhan",
                    role = c("aut", "cre"),
                    email = "haydar.demirhan@rmit.edu.au")
as necessary.
Found the following HTML validation problems:
head_tail.html:107:1 (head_tail.Rd:61): Warning: missing </ul> before </div>
make_col_df.html:71:1 (make_col_df.Rd:26): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_row.Rd’ ‘delete_selected_rows.Rd’ ‘for_each_col.Rd’ ‘redo.Rd’
    ‘set_calculation.Rd’ ‘set_column_defaults.Rd’ ‘set_editor.Rd’
    ‘set_formatter_color.Rd’ ‘set_formatter_datetime.Rd’
    ‘set_formatter_html.Rd’ ‘set_formatter_image.Rd’
    ‘set_formatter_link.Rd’ ‘set_formatter_money.Rd’
    ‘set_formatter_plaintext.Rd’ ‘set_formatter_progress.Rd’
    ‘set_formatter_star.Rd’ ‘set_formatter_textarea.Rd’
    ‘set_formatter_tick_cross.Rd’ ‘set_formatter_toggle_switch.Rd’
    ‘set_formatter_traffic_light.Rd’ ‘set_header_filter.Rd’
    ‘set_multi_column_header.Rd’ ‘set_options_group_by.Rd’
    ‘set_options_pagination.Rd’ ‘set_tooltip.Rd’ ‘tabulatorContext.Rd’
    ‘titanic.Rd’ ‘trigger_download.Rd’ ‘trigger_get_data.Rd’
    ‘trigger_get_sheet_data.Rd’ ‘undo.Rd’
Maintainer: ‘Miron B. Kursa <M.Kursa@icm.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miron", "B."),
                    family = "Kursa",
                    role = c("aut", "cre"),
                    email = "m.kursa@icm.edu.pl")
as necessary.
Maintainer: ‘David Zarruk Valencia <davidzarruk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Zarruk", "Valencia", "&", "Rodrigo", "Azuero"),
                      family = "Melo",
                      role = "aut"),
               person(given = c("David", "Zarruk"),
                      family = "Valencia",
                      role = "cre",
                      email = "davidzarruk@gmail.com"))
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Ruscio",
                      role = c("aut", "cre"),
                      email = "ruscio@tcnj.edu"),
               person(given = "Shirley",
                      family = "Wang",
                      role = "aut",
                      email = "shirleywang@g.harvard.edu"))
as necessary.
Maintainer: ‘Mateu Menendez-Serra <mateu.menendez@ceab.csic.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mateu",
                      family = "Menendez-Serra",
                      role = c("aut", "cre"),
                      email = "mateu.menendez@ceab.csic.es"),
               person(given = c("Vicente", "J."),
                      family = "Ontiveros",
                      role = "aut"),
               person(given = c("Emilio", "O."),
                      family = "Casamayor",
                      role = "aut"),
               person(given = "David",
                      family = "Alonso",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘RTCC.Rd’:
    https://doi.org/10.1038/s41396-019-0454-4
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                              ^
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                                    ^
Found the following HTML validation problems:
deprecated.html:53:1 (deprecated.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Claas-Thido Pfaff <claas-thido.pfaff@idiv-biodiversity.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claas-Thido",
                    family = "Pfaff",
                    role = c("aut", "cre"),
                    email = "claas-thido.pfaff@idiv-biodiversity.de")
as necessary.
Found the following HTML validation problems:
cs_fold.html:54:1 (cs_fold.Rd:14): Warning: missing </ul> before </div>
rs_fold.html:54:1 (rs_fold.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Jake Anderson <ajakef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Anderson",
                    role = c("aut", "cre"),
                    email = "ajakef@gmail.com")
as necessary.
Maintainer: ‘Loren Collingwood <loren.collingwood@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "P."),
                      family = "Jurka",
                      role = "aut"),
               person(given = "Loren",
                      family = "Collingwood",
                      role = c("aut", "cre"),
                      email = "loren.collingwood@gmail.com"),
               person(given = c("Amber", "E."),
                      family = "Boydstun",
                      role = "aut"),
               person(given = "Emiliano",
                      family = "Grossman",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Lingxiao Li <lilingxiao@mail.sdu.edu.cn>’

The Description field contains
  discussed in Barigozzi et al. (2022) <arXiv:2206.09800>, and Barigozzi
  et al. (2023) <arXiv:2303.18163>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘test_addPageBreak.doc’ ‘test_addPlot.doc’ ‘test_addSessionInfo.doc’
  ‘test_addTable.doc’
Found the following HTML validation problems:
ajs_article.html:71:1 (ajs_article.Rd:28): Warning: missing </ul> before </div>
jss_article.html:71:1 (jss_article.Rd:28): Warning: missing </ul> before </div>
rjournal_article.html:172:1 (rjournal_article.Rd:75): Warning: missing </ul> before </div>
rss_article.html:62:1 (rss_article.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.tide_harmonics.html:46:1 (is.tide_harmonics.Rd:10): Warning: missing </ul> before </div>
tide_stations.html:50:1 (tide_stations.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RTIGER’
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RTIGER.Rcheck/00install.out’ for details.
Maintainer: ‘Tomas Okal <tomas.okal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Okal",
                    role = c("aut", "cre"),
                    email = "tomas.okal@gmail.com")
as necessary.
Maintainer: ‘Paul Saary <rtk@paulsaary.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Saary",
                      role = c("aut", "cre"),
                      email = "rtk@paulsaary.de"),
               person(given = "Falk",
                      family = "Hildebrand",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘str_rtl.Rd’
Found the following HTML validation problems:
getMinBBox.html:48:1 (getMinBBox.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
save_auth_rtoot.html:54:1 (save_auth_rtoot.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) rt_GET.Rd:13: Lost braces
    13 | code{\link[httr]{GET}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
checkRd: (-1) rt_POST.Rd:13: Lost braces
    13 | code{\link[httr]{POST}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
Found the following HTML validation problems:
compact.html:46:1 (compact.Rd:10): Warning: missing </ul> before </div>
print.rt_api.html:51:1 (print.rt_api.Rd:12): Warning: missing </ul> before </div>
rt.html:168:1 (rt.Rd:81): Warning: missing </ul> before </div>
rt_url.html:56:1 (rt_url.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
theme_rtrek.html:70:1 (theme_rtrek.Rd:29): Warning: missing </ul> before </div>
Found the following HTML validation problems:
split_data.html:54:1 (split_data.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Avi Blinder <aviblinder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Avi",
                    family = "Blinder",
                    role = c("aut", "cre"),
                    email = "aviblinder@gmail.com")
as necessary.
Found the following HTML validation problems:
print.count.summary.html:51:1 (print.count.summary.Rd:12): Warning: missing </ul> before </div>
print.trim.html:51:1 (print.trim.Rd:12): Warning: missing </ul> before </div>
print.trim.gof.html:47:1 (print.trim.gof.Rd:10): Warning: missing </ul> before </div>
print.trim.overall.html:47:1 (print.trim.overall.Rd:10): Warning: missing </ul> before </div>
print.trim.wald.html:47:1 (print.trim.wald.Rd:10): Warning: missing </ul> before </div>
print.trimcommand.html:51:1 (print.trimcommand.Rd:12): Warning: missing </ul> before </div>
summary.trimbatch.html:51:1 (summary.trimbatch.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Houjie Wang <wanghoujie6688@gmail.com>’

The Description field contains
  Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexandre Maurel <alexandre.maurel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandre",
                    family = "Maurel",
                    role = c("aut", "cre"),
                    email = "alexandre.maurel@gmail.com")
as necessary.

The Description field contains
  (https://github.com/tercen/TSON).
Please enclose URLs in angle brackets (<...>).
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Colors.Rd: xts
  rtsplot.Rd: xts
  rtsplot.candle.Rd: xts
  rtsplot.fake.stock.data.Rd: xts
  rtsplot.hl.Rd: xts
  rtsplot.lines.Rd: xts
  rtsplot.matplot.Rd: xts
  rtsplot.ohlc.Rd: xts
  rtsplot.polygon.Rd: xts
  rtsplot.scale.volume.Rd: xts
  rtsplot.text.Rd: xts
  rtsplot.volume.Rd: xts
  rtsplot.x.highlight.Rd: xts
  rtsplot2Y.Rd: xts
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Babak Naimi <naimi.b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babak",
                    family = "Naimi",
                    role = c("aut", "cre"),
                    email = "naimi.b@gmail.com")
as necessary.
checkRd: (-1) rts.Rd:32: Lost braces
    32 | If a name of a raster time series file is provided for the \code{x} argument, it acts the same as code{\link[rts]{read.rts}}.
       |                                                                                                       ^
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Park and Wang (2018)<arXiv:1807.02215>. This work was partially
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
twigs.html:65:1 (twigs.Rd:20): Warning: missing </ul> before </div>
twigs_index.html:65:1 (twigs_index.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_api_response.html:50:1 (check_api_response.Rd:12): Warning: missing </ul> before </div>
create_theme.html:132:1 (create_theme.Rd:74): Warning: missing </ul> before </div>
delete_form.html:51:1 (delete_form.Rd:13): Warning: missing </ul> before </div>
get_authorization.html:46:1 (get_authorization.Rd:10): Warning: missing </ul> before </div>
get_me.html:47:1 (get_me.Rd:11): Warning: missing </ul> before </div>
get_response.html:51:1 (get_response.Rd:12): Warning: missing </ul> before </div>
get_teams.html:50:1 (get_teams.Rd:14): Warning: missing </ul> before </div>
get_workspaces.html:91:1 (get_workspaces.Rd:46): Warning: missing </ul> before </div>
post_response.html:59:1 (post_response.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Found the following HTML validation problems:
check_known_collections.html:53:1 (check_known_collections.Rd:12): Warning: missing </ul> before </div>
get_ploidy_from_frame.html:46:1 (get_ploidy_from_frame.Rd:10): Warning: missing </ul> before </div>
modify_scaled_likelihoods_for_known_mixture_fish.html:55:1 (modify_scaled_likelihoods_for_known_mixture_fish.Rd:16): Warning: missing </ul> before </div>
read_gsi_sim.html:57:1 (read_gsi_sim.Rd:16): Warning: missing </ul> before </div>
tidy_mcmc_coll_rep_stuff.html:59:1 (tidy_mcmc_coll_rep_stuff.Rd:16): Warning: missing </ul> before </div>
tidy_mcmc_pofz.html:59:1 (tidy_mcmc_pofz.Rd:16): Warning: missing </ul> before </div>
tidy_pi_traces.html:59:1 (tidy_pi_traces.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_pack_names.html:48:1 (add_pack_names.Rd:10): Warning: missing </ul> before </div>
expose_single.html:65:1 (expose_single.Rd:20): Warning: missing </ul> before </div>
pack_info.html:52:1 (pack_info.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
multi_predict.html:72:1 (multi_predict.Rd:25): Warning: missing </ul> before </div>
tidy.cubist.html:322:1 (tidy.cubist.Rd:293): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.rumidas.html:51:1 (print.rumidas.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Bryan Jenks <bryanjenks@protonmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/tallguyjenks/runes
which should likely be
  https://github.com/tallguyjenks/runes/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Frédéric Gosselin [cre, aut] (<https://orcid.org/0000-0003-3737-106X>, INRAE), Institut national de recherche pour l‘agriculture, l’alimentation et l'environnement [cph] (INRAE)’
  Authors@R: ‘Frédéric Gosselin [cre, aut] (ORCID: <https://orcid.org/0000-0003-3737-106X>, institution: INRAE), Institut national de recherche pour l‘agriculture, l’alimentation et l'environnement [cph] (INRAE)’
'library' or 'require' calls in package code:
  ‘nimble’ ‘nimbleAPT’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Found the following HTML validation problems:
dot-seq_at.html:50:1 (dot-seq_at.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Mauricio Santelices <m.santelicesa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauricio",
                    family = "Santelices",
                    role = c("aut", "cre"),
                    email = "m.santelicesa@gmail.com")
as necessary.
Maintainer: ‘Johann Gagnon-Bartsch <johanngb@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johann",
                    family = "Gagnon-Bartsch",
                    role = c("aut", "cre"),
                    email = "johanngb@umich.edu")
as necessary.
checkRd: (-1) RUVIII.Rd:51: Lost braces
    51 | If code{return.info} is \code{TRUE}, a list is returned that contains:
       |        ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                                   ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘RVA.Rmd’ using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’

SUMMARY: processing the following file failed:
  ‘RVA.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
calc.cfb.html:67:1 (calc.cfb.Rd:25): Warning: missing </ul> before </div>
get.cpm.colors.html:46:1 (get.cpm.colors.Rd:10): Warning: missing </ul> before </div>
get.cutoff.df.html:65:1 (get.cutoff.df.Rd:19): Warning: missing </ul> before </div>
get.cutoff.ggplot.html:57:1 (get.cutoff.ggplot.Rd:15): Warning: missing </ul> before </div>
make.cutoff.plotly.html:49:1 (make.cutoff.plotly.Rd:10): Warning: missing </ul> before </div>
plot_cutoff_single.html:64:1 (plot_cutoff_single.Rd:18): Warning: missing </ul> before </div>
plot_heatmap.cfb.html:62:1 (plot_heatmap.cfb.Rd:20): Warning: missing </ul> before </div>
plot_heatmap.cpm.html:62:1 (plot_heatmap.cpm.Rd:20): Warning: missing </ul> before </div>
produce.cutoff.message.html:86:1 (produce.cutoff.message.Rd:35): Warning: missing </ul> before </div>
produce.cutoff.warning.html:51:1 (produce.cutoff.warning.Rd:12): Warning: missing </ul> before </div>
reformat.ensembl.html:56:1 (reformat.ensembl.Rd:16): Warning: missing </ul> before </div>
transform.geneid.html:64:1 (transform.geneid.Rd:20): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:528:1 (inst/NEWS.Rd:259): Warning: missing </ul> before </div>
NEWS.html:53:1 (inst/NEWS.Rd:23): Warning: <h4> anchor "bug-fixed" already defined
NEWS.html:71:1 (inst/NEWS.Rd:32): Warning: <h4> anchor "bug-fixed" already defined
NEWS.html:134:1 (inst/NEWS.Rd:65): Warning: <h4> anchor "small-changes-and-fixes" already defined
NEWS.html:158:1 (inst/NEWS.Rd:77): Warning: <h4> anchor "small-changes-and-fixes" already defined
NEWS.html:176:1 (inst/NEWS.Rd:87): Warning: <h4> anchor "new-features" already defined
NEWS.html:205:1 (inst/NEWS.Rd:101): Warning: <h4> anchor "new-features" already defined
NEWS.html:223:1 (inst/NEWS.Rd:111): Warning: <h4> anchor "new-features" already defined
NEWS.html:284:1 (inst/NEWS.Rd:142): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:300:1 (inst/NEWS.Rd:151): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:315:1 (inst/NEWS.Rd:159): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:330:1 (inst/NEWS.Rd:168): Warning: <h4> anchor "new-features" already defined
NEWS.html:365:1 (inst/NEWS.Rd:184): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:383:1 (inst/NEWS.Rd:193): Warning: <h4> anchor "new-features" already defined
NEWS.html:400:1 (inst/NEWS.Rd:200): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:418:1 (inst/NEWS.Rd:210): Warning: <h4> anchor "new-features" already defined
NEWS.html:435:1 (inst/NEWS.Rd:217): Warning: <h4> anchor "bug-fixes" already defined
NEWS.html:456:1 (inst/NEWS.Rd:228): Warning: <h4> anchor "bug-fixes" already defined
Found the following HTML validation problems:
meshInfo.html:46:1 (meshInfo.Rd:10): Warning: missing </ul> before </div>
vcgPlatonic.html:88:1 (vcgPlatonic.Rd:49): Warning: missing </ul> before </div>
Maintainer: ‘Etor Arza <etorarza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Etor",
                    family = "Arza",
                    role = c("aut", "cre"),
                    email = "etorarza@gmail.com")
as necessary.
Found the following HTML validation problems:
cpp_helper_from_ranks_to_integrable_values.html:50:1 (cpp_helper_from_ranks_to_integrable_values.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rx_multiple.html:58:1 (rx_multiple.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
LiveHTML.html:136:1 (LiveHTML.Rd:80): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:142:1 (LiveHTML.Rd:84): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:165:1 (LiveHTML.Rd:97): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:181:1 (LiveHTML.Rd:107): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:187:1 (LiveHTML.Rd:111): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:210:1 (LiveHTML.Rd:124): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:216:1 (LiveHTML.Rd:128): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:241:1 (LiveHTML.Rd:143): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:257:1 (LiveHTML.Rd:153): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:263:1 (LiveHTML.Rd:157): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:286:1 (LiveHTML.Rd:170): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:292:1 (LiveHTML.Rd:174): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:315:1 (LiveHTML.Rd:187): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:321:1 (LiveHTML.Rd:191): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:345:1 (LiveHTML.Rd:205): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:351:1 (LiveHTML.Rd:209): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:376:1 (LiveHTML.Rd:224): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:382:1 (LiveHTML.Rd:228): Warning: <h5> anchor "Arguments" already defined
LiveHTML.html:411:1 (LiveHTML.Rd:247): Warning: <h5> anchor "Usage" already defined
LiveHTML.html:417:1 (LiveHTML.Rd:251): Warning: <h5> anchor "Arguments" already defined
google_form.html:46:1 (google_form.Rd:10): Warning: missing </ul> before </div>
repair_encoding.html:49:1 (repair_encoding.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.
Maintainer: ‘Charles Determan Jr <cdetermanjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Determan Jr.",
                      role = "aut"),
               person(given = "Charles",
                      family = "Determan Jr",
                      role = "cre",
                      email = "cdetermanjr@gmail.com"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CRAN.R-project.org
    From: README.md

The BugReports field in DESCRIPTION has
  http://github.com/cdeterman/RViennaCL/issues/new
which should likely be
  http://github.com/cdeterman/RViennaCL/issues/new/issues
instead.
Maintainer: ‘Alun Thomas <Alun.Thomas@utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alun",
                    family = "Thomas",
                    role = c("aut", "cre"),
                    email = "alun.thomas@utah.edu")
as necessary.
Maintainer: ‘Alexey Seleznev <selesnow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Seleznev",
                    role = c("aut", "cre"),
                    email = "selesnow@gmail.com")
as necessary.
Maintainer: ‘Parker Holzer <parker.holzer@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Parker",
                    family = "Holzer",
                    role = c("aut", "cre"),
                    email = "parker.holzer@yale.edu")
as necessary.

The Description field contains
  <arXiv:2005.14083>, which is a particular application of the radial
  al. (2020) <arXiv:2005.14083> when publishing results that use this
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Navarro Fabien <fnavarro@math.cnrs.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "F.",
                      family = "Navarro",
                      role = "aut"),
               person(given = "C.",
                      family = "Chesneau",
                      role = "aut"),
               person(given = "Navarro",
                      family = "Fabien",
                      role = "cre",
                      email = "fnavarro@math.cnrs.fr"))
as necessary.
checkRd: (-1) HardThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
checkRd: (-1) SoftThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
Found the following HTML validation problems:
npl.html:49:1 (npl.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘wcvp_checklist.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wcvp_summary_gt.Rd: gt
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alan Butler <rabutler@usbr.gov>’

Found the following (possibly) invalid URLs:
  URL: http://www.riverware.org/HelpSystem/index.html#page/SolutionApproaches/Solutions_MRM.4.5.html#ww477402
    From: man/read_rw_csv.Rd
    Message: Invalid URL: '#' not allowed in fragment
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
as_rwd_agg.html:63:1 (as_rwd_agg.Rd:25): Warning: missing </ul> before </div>
createSlotAggList.html:48:1 (createSlotAggList.Rd:11): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:78:1 (inst/NEWS.Rd:37): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Mafalda Sá Ferreira <msm.ferreira@campus.fct.unl.pt>’

The Description field contains
  <arXiv:2112.07508v3> and Oliveira et al. (2021) <arXiv:2102.05373v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
lookup_emoji.html:63:1 (lookup_emoji.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Found the following HTML validation problems:
WBjdoql.html:104:1 (WBjdoql.Rd:42): Warning: missing </ul> before </div>
WBsearchURL.html:62:1 (WBsearchURL.Rd:18): Warning: missing </ul> before </div>
filterstring.html:58:1 (filterstring.Rd:16): Warning: missing </ul> before </div>
sexstring.html:46:1 (sexstring.Rd:10): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Maintainer: ‘Andy South <southandy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andy",
                    family = "South",
                    role = c("aut", "cre"),
                    email = "southandy@gmail.com")
as necessary.
Malformed Title field: should not end in a period.
Found the following HTML validation problems:
funmaintext.html:122:1 (funmaintext.Rd:54): Warning: missing </ul> before </div>
s_hs.html:89:1 (s_hs.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Felipe Souza <lipecaso@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) wtss_to_ts.Rd:31: Lost braces; missing escapes or markup?
    31 | This period can be either {"month", "week", "day"}, 
       |                           ^
checkRd: (-1) wtss_to_ts.Rd:32: Lost braces; missing escapes or markup?
    32 | {"months", "weeks", "days"} or
       | ^
checkRd: (-1) wtss_to_ts.Rd:33: Lost braces; missing escapes or markup?
    33 | {12, 52, 365}. This function creates a new time series with the required 
       | ^
'::' or ':::' imports not declared from:
  ‘changepoint’ ‘strucchange’
'library' or 'require' calls not declared from:
  ‘changepoint’ ‘strucchange’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [6s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(Rwtss)
  Rwtss - R interface to Web Time Series Service.
  Loaded Rwtss v0.9.2.
          See ?Rwtss for help, citation("Rwtss") for use in publication.
          See demo(package = "Rwtss") for examples.
  > 
  > test_check("Rwtss")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_wtss.R:60:9'): Plot ──────────────────────────────────────────
  unname(summary(g)[1, 2]) == "gg" is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  Backtrace:
      ▆
   1. ├─vcr::use_cassette(...) at test_wtss.R:53:5
   2. │ └─base::withCallingHandlers(...)
   3. └─testthat::expect_true(unname(summary(g)[1, 2]) == "gg") at test_wtss.R:60:9
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ]
  Error: Test failures
  In addition: Warning message:
  `check_cassette_names()` was deprecated in vcr 2.0.0. 
  Execution halted
Found the following HTML validation problems:
dot-wtss_coverage_description.html:50:1 (dot-wtss_coverage_description.Rd:12): Warning: missing </ul> before </div>
dot-wtss_ggplot_series.html:51:1 (dot-wtss_ggplot_series.Rd:12): Warning: missing </ul> before </div>
pipe.html:40:1 (pipe.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Eric Hare <eric@omnianalytics.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Shum",
                      role = "aut",
                      email = "alex@ALShum.com"),
               person(given = "Eric",
                      family = "Hare",
                      role = "cre",
                      email = "eric@omnianalytics.io"))
as necessary.
Found the following HTML validation problems:
build_url.html:58:1 (build_url.Rd:16): Warning: missing </ul> before </div>
measurement_exists.html:50:1 (measurement_exists.Rd:12): Warning: missing </ul> before </div>
stop_for_error.html:46:1 (stop_for_error.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Bob Obenchain <wizbob@att.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bob",
                    family = "Obenchain",
                    role = c("aut", "cre"),
                    email = "wizbob@att.net")
as necessary.
checkRd: (-1) plot.eff.ridge.Rd:6: Lost braces
     6 |  emph{Single Interior Knot} at the MSE Optimal m-Extent of Shrinkage. The
       |      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  eff.biv.Rd: ellipse.lm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
methods_rxylib.html:59:1 (methods_rxylib.Rd:18): Warning: missing </ul> before </div>
Specified C++14: please drop specification unless essential
Found the following HTML validation problems:
set_output_width.html:46:1 (set_output_width.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mikkel Meyer Andersen <mikl@math.aau.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.

The Description field contains
  'Yandex Translate' (https://translate.yandex.com/) is a statistical
  https://tech.yandex.com/translate/doc/dg/concepts/About-docpage/ .
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Tom August <tomaug@ceh.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "August",
                    role = c("aut", "cre"),
                    email = "tomaug@ceh.ac.uk")
as necessary.
Found the following HTML validation problems:
parse_port.html:46:1 (parse_port.Rd:10): Warning: missing </ul> before </div>
parse_timepoint.html:46:1 (parse_timepoint.Rd:10): Warning: missing </ul> before </div>
parse_timeseries.html:46:1 (parse_timeseries.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joris Bierkens <j.bierkens@vu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joris",
                    family = "Bierkens",
                    role = c("aut", "cre"),
                    email = "j.bierkens@vu.nl")
as necessary.

The Description field contains
  <arXiv:1607.03188> applied and Bouncy Particle Sampler
  <arXiv:1510.02451> for a Gaussian target and Student distribution.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                   ^
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                                 ^
checkRd: (-1) ZigZagLogistic.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{dataY}{Vector of length n containing {0, 1}-valued observations of the dependent variable y.}
       |                                            ^
Found the following HTML validation problems:
receive.multipart.html:46:1 (receive.multipart.Rd:8): Warning: missing </ul> before </div>
send.multipart.html:52:1 (send.multipart.Rd:11): Warning: missing </ul> before </div>
checkRd: (-1) ciReg.Rd:10: Lost braces
    10 | \item{fit}{an object of class{lm}, i.e. the output from \code{\link{lm}}.}
       |                              ^
Found the following HTML validation problems:
s2_cell_is_valid.html:102:1 (s2_cell_is_valid.Rd:78): Warning: missing </ul> before </div>
s2_cell_union_normalize.html:103:1 (s2_cell_union_normalize.Rd:62): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘s3_check_for_file.R’ ‘s3_file_size.R’ ‘s3_get.Rd’ ‘s3_get_files.R’
    ‘s3_parse_uri.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fit_density_ratio.R’ ‘fit_plug_and_play.R’
Found the following HTML validation problems:
get_functions.html:46:1 (get_functions.Rd:10): Warning: missing </ul> before </div>
pnp_gaussian.html:58:1 (pnp_gaussian.Rd:16): Warning: missing </ul> before </div>
pnp_kde.html:58:1 (pnp_kde.Rd:16): Warning: missing </ul> before </div>
pnp_none.html:50:1 (pnp_none.Rd:12): Warning: missing </ul> before </div>
pnp_vine.html:54:1 (pnp_vine.Rd:14): Warning: missing </ul> before </div>
File ‘S7/libs/S7.so’:
  Found non-API calls to R: ‘FORMALS’, ‘Rf_allocSExp’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Zhongyang Zhang <zhongyang.zhang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhongyang.zhang@mssm.edu"),
               person(given = "Ke",
                      family = "Hao",
                      role = "aut"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "ctb"))
as necessary.
Maintainer: ‘Jakub Nowosad <nowosad.jakub@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhong Guan <zguan@iusb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhong",
                    family = "Guan",
                    role = c("aut", "cre"),
                    email = "zguan@iusb.edu")
as necessary.
checkRd: (-1) BootsChapt.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) SemiparChangePoint.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) schapt.Rd:44: Escaped LaTeX specials: \&
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rampal", "S.", "Etienne", "&", "Bart"),
                      family = "Haegeman",
                      role = "aut"),
               person(given = c("Rampal", "S."),
                      family = "Etienne",
                      role = "cre",
                      email = "r.s.etienne@rug.nl"))
as necessary.
Found the following HTML validation problems:
summary.sads-class.html:54:1 (summary.sads-class.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
run_app.html:81:1 (run_app.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Sheerin Dahwan Aziz <sheerindahwan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"),
               person(given = c("Sheerin", "Dahwan"),
                      family = "Aziz",
                      role = c("aut", "cre"),
                      email = "sheerindahwan@gmail.com"))
as necessary.
Maintainer: ‘Rizki Ananda Fauziah <rizkiananda133@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rizki", "Ananda"),
                      family = "Fauziah",
                      role = c("aut", "cre"),
                      email = "rizkiananda133@gmail.com"),
               person(given = c("Ika", "Yuni"),
                      family = "Wulansari",
                      role = "aut"))
as necessary.
Maintainer: ‘Velia Tri Marliana <221810642@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Velia", "Tri"),
                      family = "Marliana",
                      role = c("aut", "cre"),
                      email = "221810642@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Rizqina Rahmati <221810583@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rizqina",
                      family = "Rahmati",
                      role = c("aut", "cre"),
                      email = "221810583@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Wicak Surya Hasani <221710052@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Wicak", "Surya"),
                      family = "Hasani",
                      role = c("aut", "cre"),
                      email = "221710052@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
boostrap.data.html:63:1 (boostrap.data.Rd:26): Warning: missing </ul> before </div>
extract-methods.html:78:1 (extract-methods.Rd:36): Warning: missing </ul> before </div>
read-methods.html:55:1 (read-methods.Rd:16): Warning: missing </ul> before </div>
sub-SaemixModel-method.html:59:1 (sub-SaemixModel-method.Rd:16): Warning: missing </ul> before </div>
sub-SaemixObject-method.html:59:1 (sub-SaemixObject-method.Rd:16): Warning: missing </ul> before </div>
sub-SaemixRes-method.html:59:1 (sub-SaemixRes-method.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Yolanda Marhuenda <y.marhuenda@umh.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabel",
                      family = "Molina",
                      role = "aut"),
               person(given = "Yolanda",
                      family = "Marhuenda",
                      role = c("aut", "cre"),
                      email = "y.marhuenda@umh.es"))
as necessary.
Maintainer: ‘Sebastian Warnholz <wahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Warnholz",
                    role = c("aut", "cre"),
                    email = "wahani@gmail.com")
as necessary.
Found the following HTML validation problems:
update.html:64:1 (update.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.sim_setup.html:59:1 (as.data.frame.sim_setup.Rd:16): Warning: missing </ul> before </div>
base_add_id.html:50:1 (base_add_id.Rd:12): Warning: missing </ul> before </div>
pipe.html:50:1 (pipe.Rd:12): Warning: missing </ul> before </div>
read_data.html:62:1 (read_data.Rd:25): Warning: missing </ul> before </div>
sim_comp_preconf.html:52:1 (sim_comp_preconf.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Asun Lubiano <lubiano@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Trutschnig",
                      role = "aut",
                      email = "wolfgang@trutschnig.net"),
               person(given = "Asun",
                      family = "Lubiano",
                      role = c("aut", "cre"),
                      email = "lubiano@uniovi.es"))
as necessary.
Found the following HTML validation problems:
vars_tags.html:50:1 (vars_tags.Rd:12): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Alexander Ly <a.ly@jasp-stats.org>’

The Description field contains
  (2019) "Safe Testing" <arXiv:1906.07801>, for details on safe logrank
  Horizon" <arXiv:2011.06931v3> and Turner, Ly and Grunwald (2021) "Safe
  beyond" <arXiv:2106.02693> for details on safe contingency table tests.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
safetensors.html:127:1 (safetensors.Rd:80): Warning: <h5> anchor "Usage" already defined
safetensors.html:143:1 (safetensors.Rd:90): Warning: <h5> anchor "Usage" already defined
safetensors.html:149:1 (safetensors.Rd:94): Warning: <h5> anchor "Arguments" already defined
safetensors.html:172:1 (safetensors.Rd:107): Warning: <h5> anchor "Usage" already defined
safetensors.html:178:1 (safetensors.Rd:111): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
render_widget.html:54:1 (render_widget.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
backwards.tiebreak.html:54:1 (backwards.tiebreak.Rd:14): Warning: missing </ul> before </div>
forwards.tiebreak.html:54:1 (forwards.tiebreak.Rd:14): Warning: missing </ul> before </div>
ordered.preferences.html:46:1 (ordered.preferences.Rd:10): Warning: missing </ul> before </div>
ordered.tiebreak.html:50:1 (ordered.tiebreak.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Dragonera.Rd’:
    https://doi.org/10.1016/j.apenergy.2017.09.030
  File ‘EstacaDeBares.Rd’:
    https://doi.org/10.1016/j.oceaneng.2015.05.038
    https://doi.org/10.1109/JOE.2016.2529400
  File ‘SailoR-package.Rd’:
    https://doi.org/10.5194/gmd-13-3221-2020
  File ‘WRF.Rd’:
    https://doi.org/10.1002/2017JD027511
    https://doi.org/10.1007/s00382-019-04673-9
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘class-2-differential.r’ ‘dual-apply.r’ ‘dual-math.r’
    ‘dual-summary.r’ ‘dual-test-near-equality.r’ ‘dual.r’ ‘dualFun1.Rd’
Found the following HTML validation problems:
rforcecom.getServerTimestamp.html:52:1 (rforcecom.getServerTimestamp.Rd:16): Warning: missing </ul> before </div>
rforcecom.retrieve.html:100:1 (rforcecom.retrieve.Rd:48): Warning: missing </ul> before </div>
rforcecom.search.html:56:1 (rforcecom.search.Rd:18): Warning: missing </ul> before </div>
sf_report_folder_children.html:56:1 (sf_report_folder_children.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Yuwen Gu <yuwen.gu@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuwen",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "yuwen.gu@uconn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "zouxx019@umn.edu"))
as necessary.
Found the following HTML validation problems:
fit_CM.html:252:1 (fit_CM.Rd:123): Warning: <h3> anchor "start" already defined
smolt_func.html:200:1 (smolt_func.Rd:119): Warning: <h3> anchor "hatchery_args" already defined
Maintainer: ‘Scott Vander Wiel <scottv@lanl.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hannah",
                      family = "Director",
                      role = "aut"),
               person(given = c("Scott", "Vander"),
                      family = "Wiel",
                      role = c("aut", "cre"),
                      email = "scottv@lanl.gov"),
               person(given = "James",
                      family = "Gattiker",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Rix <alexrix@umich.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘approxdist.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘nonlogistic.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘obsloglik.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘obsloglikEM.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘sensitivity.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
Maintainer: ‘Norbert Krautenbacher <norbert.krautenbacher@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norbert",
                      family = "Krautenbacher",
                      role = c("aut", "cre"),
                      email = "norbert.krautenbacher@tum.de"),
               person(given = "Kevin",
                      family = "Strauss",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Mandl",
                      role = "aut"),
               person(given = "Christiane",
                      family = "Fuchs",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael Baldassaro <mbaldassaro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Baldassaro",
                    role = c("aut", "cre"),
                    email = "mbaldassaro@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) binaryChoice.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Hongchao Qi <hcqi1992@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongchao",
                      family = "Qi",
                      role = c("aut", "cre"),
                      email = "hcqi1992@gmail.com"),
               person(given = "Fang",
                      family = "Zhu",
                      role = "aut"))
as necessary.
Maintainer: ‘Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hugo", "Andres", "Gutierrez"),
                    family = "Rojas",
                    role = c("aut", "cre"),
                    email = "hagutierrezro@gmail.com")
as necessary.
Found the following HTML validation problems:
print.power.cmh.html:60:1 (print.power.cmh.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘William Wheeler <WheelerB@imsweb.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mitchell", "H."),
                      family = "Gail",
                      role = "aut"),
               person(given = "William",
                      family = "Wheeler",
                      role = "cre",
                      email = "WheelerB@imsweb.com"))
as necessary.
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Jonathan Lisic <jlisic@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Lisic",
                      role = c("aut", "cre"),
                      email = "jlisic@gmail.com"),
               person(given = "Anton",
                      family = "Grafström",
                      role = "aut"))
as necessary.
Maintainer: ‘Juliane Manitz <r@manitz.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juliane",
                      family = "Manitz",
                      role = c("aut", "cre"),
                      email = "r@manitz.org"),
               person(given = "Mark",
                      family = "Hempelmann",
                      role = "ctb"),
               person(given = "Goeran",
                      family = "Kauermann",
                      role = "ctb"),
               person(given = "Helmut",
                      family = "Kuechenhoff",
                      role = "aut"),
               person(given = "Shuai",
                      family = "Shao",
                      role = "ctb"),
               person(given = "Cornelia",
                      family = "Oberhauser",
                      role = "ctb"),
               person(given = "Nina",
                      family = "Westerheide",
                      role = "ctb"),
               person(given = "Manuel",
                      family = "Wiesenfarth",
                      role = "ctb"))
as necessary.
Maintainer: ‘Diana Trutschel <Diana.Trutschel@dzne.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diana",
                      family = "Trutschel",
                      role = c("aut", "cre"),
                      email = "diana.trutschel@dzne.de"),
               person(given = "Hendrik",
                      family = "Treutler",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
alokasi_dt.html:58:1 (alokasi_dt.Rd:17): Warning: missing </ul> before </div>
round_preserve_sum.html:50:1 (round_preserve_sum.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Emilio Lopez Escobar <emilio@quantos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emilio", "Lopez"),
                      family = "Escobar",
                      role = c("aut", "cre", "cph"),
                      email = "emilio@quantos.mx"),
               person(given = c("Ernesto", "Barrios"),
                      family = "Zamudio",
                      role = "ctb",
                      email = "ebarrios@itam.mx"),
               person(given = c("Juan", "Francisco", "Munoz"),
                      family = "Rosas",
                      role = "ctb",
                      email = "jfmunoz@go.ugr.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
CoreABS.html:136:1 (CoreABS.Rd:86): Warning: <h5> anchor "Usage" already defined
CoreABS.html:142:1 (CoreABS.Rd:90): Warning: <h5> anchor "Arguments" already defined
Zhu23ABS.html:158:1 (Zhu23ABS.Rd:134): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:164:1 (Zhu23ABS.Rd:138): Warning: <h5> anchor "Arguments" already defined
Zhu23ABS.html:274:1 (Zhu23ABS.Rd:191): Warning: <h5> anchor "Examples" already defined
Zhu23ABS.html:305:1 (Zhu23ABS.Rd:217): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:311:1 (Zhu23ABS.Rd:221): Warning: <h5> anchor "Arguments" already defined
Zhu23ABS.html:324:1 (Zhu23ABS.Rd:228): Warning: <h5> anchor "Details" already defined
Zhu23ABS.html:340:1 (Zhu23ABS.Rd:236): Warning: <h5> anchor "Examples" already defined
Zhu23ABS.html:360:1 (Zhu23ABS.Rd:251): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:376:1 (Zhu23ABS.Rd:261): Warning: <h5> anchor "Usage" already defined
Zhu23ABS.html:382:1 (Zhu23ABS.Rd:265): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Haoming Jiang <jianghm.ustc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haoming",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "jianghm.ustc@gmail.com"),
               person(given = "Yukun",
                      family = "Ma",
                      role = "aut"),
               person(given = "Han",
                      family = "Liu",
                      role = "aut"),
               person(given = "Kathryn",
                      family = "Roeder",
                      role = "aut"),
               person(given = "Xingguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Tuo",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = c("Michael", "J."),
                      family = "Seo",
                      role = "aut"),
               person(given = "G.",
                      family = "Chu",
                      role = "aut"),
               person(given = "Balasubramanian",
                      family = "Narasimhan",
                      role = "aut"),
               person(given = "Jun",
                      family = "Li",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stanford.edu"))
as necessary.
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
Found the following HTML validation problems:
transformedWeights.html:56:1 (transformedWeights.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
RCM.html:488:1 (RCM.Rd:331): Warning: <h3> anchor "start" already defined
RCM.html:514:1 (RCM.Rd:350): Warning: <h3> anchor "map" already defined
RCM_assess.html:96:1 (RCM_assess.Rd:50): Warning: <h3> anchor "Data" already defined
RCM_assess.html:102:1 (RCM_assess.Rd:55): Warning: <h3> anchor "StockPars" already defined
Maintainer: ‘Jiayi Ji <Jiayi.Ji@mountsinai.org>’

The Description field contains
  cancer data <arXiv:2012.06093>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Florian Lecocq <florian.lecocq@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘samurais-package.Rd’:
    https://doi.org/10.1002/widm.1298
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/samurais.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) ModelHMMR-class.Rd:37: Lost braces; missing escapes or markup?
    37 |         class {StatHMMR}).
       |               ^
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
Maintainer: ‘Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "Myles"),
                    family = "McDonnell",
                    role = c("aut", "cre"),
                    email = "robertmylesmcdonnell@gmail.com")
as necessary.
Found the following HTML validation problems:
san_fran_Ocean_Beach.html:51:1 (san_fran_Ocean_Beach.Rd:13): Warning: missing </ul> before </div>
san_fran_aquatic_park.html:46:1 (san_fran_aquatic_park.Rd:10): Warning: missing </ul> before </div>
san_fran_baker_beach.html:51:1 (san_fran_baker_beach.Rd:13): Warning: missing </ul> before </div>
san_fran_crissy_field.html:50:1 (san_fran_crissy_field.Rd:12): Warning: missing </ul> before </div>
san_fran_hydeSt_pier.html:46:1 (san_fran_hydeSt_pier.Rd:10): Warning: missing </ul> before </div>
san_fran_islais_creek.html:46:1 (san_fran_islais_creek.Rd:10): Warning: missing </ul> before </div>
san_fran_jackrabbit.html:46:1 (san_fran_jackrabbit.Rd:10): Warning: missing </ul> before </div>
san_fran_mission_creek.html:46:1 (san_fran_mission_creek.Rd:10): Warning: missing </ul> before </div>
san_fran_sunnydale_cove.html:46:1 (san_fran_sunnydale_cove.Rd:10): Warning: missing </ul> before </div>
san_fran_windsurfer_circle.html:46:1 (san_fran_windsurfer_circle.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "January",
                      family = "Weiner",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
sankeywheel-shiny.html:68:1 (sankeywheel-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atsushi",
                    family = "Kawaguchi",
                    role = c("aut", "cre"),
                    email = "kawa_a24@yahoo.co.jp")
as necessary.
Found the following HTML validation problems:
covar.html:46:1 (covar.Rd:11): Warning: missing </ul> before </div>
grp.html:50:1 (grp.Rd:13): Warning: missing </ul> before </div>
strt.html:46:1 (strt.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-relabell.html:46:1 (dot-relabell.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Murtaza Nasir <mail@murtaza.cc>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arnaud Wolfer <adwolfer@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/adwolfer/santaR/issues/new
which should likely be
  https://github.com/adwolfer/santaR/issues/new/issues
instead.
Found the following HTML validation problems:
breaks-class.html:56:1 (breaks-class.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-sapflow_tidy.html:47:1 (dot-sapflow_tidy.Rd:10): Warning: missing </ul> before </div>
initialize-sfn_data-method.html:123:1 (initialize-sfn_data-method.Rd:62): Warning: missing </ul> before </div>
initialize-sfn_data_multi-method.html:51:1 (initialize-sfn_data_multi-method.Rd:12): Warning: missing </ul> before </div>
sfn_metrics.html:151:1 (sfn_metrics.Rd:84): Warning: <h3> anchor ".funs" already defined
show-sfn_data-method.html:47:1 (show-sfn_data-method.Rd:10): Warning: missing </ul> before </div>
show-sfn_data_multi-method.html:47:1 (show-sfn_data_multi-method.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cmc_psat.Rd’ ‘h-fun.R’ ‘mc-test.R’ ‘tshift.R’
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Maintainer: ‘Stuart K. Grange <stuart.grange@york.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
setup_mesos.html:90:1 (setup_mesos.Rd:38): Warning: missing </ul> before </div>
Found the following HTML validation problems:
embed_cat_prop_plot.html:84:1 (embed_cat_prop_plot.Rd:33): Warning: missing </ul> before </div>
embed_cat_table.html:69:1 (embed_cat_table.Rd:24): Warning: missing </ul> before </div>
embed_chr_table_html.html:59:1 (embed_chr_table_html.Rd:16): Warning: missing </ul> before </div>
make_link.list.html:115:1 (make_link.list.Rd:62): Warning: missing </ul> before </div>
Found the following HTML validation problems:
description.html:68:1 (description.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  method (Centofanti et al. (2021) <arXiv:2103.15224>) that aims to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sasfunclust.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:222:1 (inst/NEWS.Rd:99): Warning: missing </ul> before </div>
NEWS.html:113:1 (inst/NEWS.Rd:48): Warning: <h4> anchor "Other-improvements" already defined
NEWS.html:136:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "New-features+3A" already defined
NEWS.html:151:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "Other-improvements" already defined
NEWS.html:166:1 (inst/NEWS.Rd:75): Warning: <h4> anchor "New-features+3A" already defined
NEWS.html:180:1 (inst/NEWS.Rd:81): Warning: <h4> anchor "Other-improvements" already defined
NEWS.html:196:1 (inst/NEWS.Rd:89): Warning: <h4> anchor "New-features+3A" already defined
NEWS.html:207:1 (inst/NEWS.Rd:94): Warning: <h4> anchor "Other-improvements" already defined
Maintainer: ‘Steven Walker <steve.walker@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by"),
                      family = "Littell",
                      role = "aut"),
               person(family = "Milliken",
                      role = "aut"),
               person(family = "Stroup",
                      role = "aut"),
               person(family = "Wolfinger",
                      role = "aut"),
               person(given = c("modifications", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut"),
               person(given = "Steven",
                      family = "Walker",
                      role = c("aut", "cre"),
                      email = "steve.walker@utoronto.ca"))
as necessary.
Found the following HTML validation problems:
sas_engine.html:46:1 (sas_engine.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) gen.ds.Rd:43-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:50-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:64-65: Lost braces
    64 |    \item{the dependence parameter \code{dep} or the vector of dependence parameters \code{dep}. When missing, these coefficients are obtained from independent standard uniform sampling.
       |         ^
checkRd: (-1) gen.ds.Rd:66: Lost braces
    66 |    \item{the list \code{asy} of asymmetric weights \eqn{\beta_{i,b}} for \eqn{b \in B}  and \eqn{i \in b}. When missing, these coefficients are obtained from independent standard uniform sampling followed by renormalization in order to satisfy the sum-to-one constraints.}
       |         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_SpatRaster.Rd’ ‘clip_bands.Rd’ ‘get_band_names.Rd’
    ‘get_spatial_resolution.Rd’ ‘get_spectral_band_names.Rd’
    ‘merge_tiles.Rd’ ‘save_by_resolution.Rd’ ‘select_bands.Rd’
Maintainer: ‘Mo Huang <mohuangx@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SAVER-package.Rd’:
    https://doi.org/10.1038/s41592-018-0033-z
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
saws-internal.html:96:1 (saws-internal.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Tiago Santos <teixeiradossantos@tugraz.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) OTC.Rd:42: Lost braces; missing escapes or markup?
    42 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTC.Rd:83: Lost braces; missing escapes or markup?
    83 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTHist.Rd:29: Lost braces; missing escapes or markup?
    29 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) dOTC.Rd:72: Lost braces; missing escapes or markup?
    72 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Shift.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Viktoriya Krakovna <vkrakovna@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Viktoriya",
                    family = "Krakovna",
                    role = c("aut", "cre"),
                    email = "vkrakovna@gmail.com")
as necessary.

The Description field contains
  (2015), <arXiv:1506.02371>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
edge_density_plot.html:58:1 (edge_density_plot.Rd:16): Warning: missing </ul> before </div>
logposterior_plot.html:58:1 (logposterior_plot.Rd:16): Warning: missing </ul> before </div>
signal_size_plot.html:59:1 (signal_size_plot.Rd:17): Warning: missing </ul> before </div>
checkRd: (-1) setData.ReducedRankRegressions.Rd:14-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setData.ReducedRankRegressions.Rd:17-18: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Meiyue Wang <mwang024@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Meiyue",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "mwang024@ucr.edu"),
               person(given = "Shizhong",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Arash A. Amini <amini.aa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Arash", "A."),
                    family = "Amini",
                    role = c("aut", "cre"),
                    email = "amini.aa@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘sbmSDP-package.Rd’:
    \keyword{ 
      community detection
      stochastic block mo [TRUNCATED]
Maintainer: ‘Matthew Ludkin <m.ludkin1@lancaster.ac.uk>’

The Description field contains
  <doi:10.1080/10618600.2000.10474879>; Ludkin (2019) <arXiv:1909.09421>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘drawblock.dp.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
  File ‘sampler.dp.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
  File ‘sampler.rj.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Updated help pages with examples
    Updated conjugate model sampler
Maintainer: ‘Valerio Gherardi <vgherard@sissa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Valerio",
                    family = "Gherardi",
                    role = c("aut", "cre"),
                    email = "vgherard@sissa.it")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Frank D. Mann <frankdmann@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frank", "D."),
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "frankdmann@gmail.com")
as necessary.
Found the following HTML validation problems:
initialize_sciencebase_session.html:62:1 (initialize_sciencebase_session.Rd:18): Warning: missing </ul> before </div>
item_replace_files.html:75:1 (item_replace_files.Rd:27): Warning: missing </ul> before </div>
sbtools_GET.html:52:1 (sbtools_GET.Rd:13): Warning: missing </ul> before </div>
sbtools_POST.html:56:1 (sbtools_POST.Rd:15): Warning: missing </ul> before </div>
sbtools_PUT.html:56:1 (sbtools_PUT.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lee",
                      family = "Wilkinson",
                      role = "aut",
                      email = "leland.wilkinson@gmail.com"),
               person(given = "Anushka",
                      family = "Anand",
                      role = "aut"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "cre",
                      email = "simon.urbanek@r-project.org"))
as necessary.
License stub is invalid DCF.
Specified C++11: please drop specification unless essential
Maintainer: ‘Niloy Biswas <niloy_biswas@g.harvard.edu>’

The Description field contains
  <arXiv:2204.01668>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (ORCID: <https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Tingni Sun <tingni@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tingni",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "tingni@wharton.upenn.edu")
as necessary.
Found the following HTML validation problems:
deprecated-functions.html:68:1 (deprecated-functions.Rd:41): Warning: missing </ul> before </div>
dot-inheritParams.html:142:1 (dot-inheritParams.Rd:76): Warning: missing </ul> before </div>
plot_rand.html:84:1 (plot_rand.Rd:33): Warning: missing </ul> before </div>
print.sc.html:95:1 (print.sc.Rd:54): Warning: missing </ul> before </div>
summary.scdf.html:55:1 (summary.scdf.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
has_converged.html:56:1 (has_converged.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Xudong Han <hanxd1217@163.com>’

The Description field contains
  Thomas N. Kipf (2017) <arXiv:1609.02907v4>) to construct the gene-cell
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get.events.Rd:51: Lost braces
    51 |   code{\link[deSolve]{events}}
       |       ^
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Valentin",
                      family = "Rousson",
                      role = "aut",
                      email = "rousson@ifspm.unizh.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Yining Chen <y.chen101@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yining",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "y.chen101@lse.ac.uk"),
               person(given = "Richard",
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Ravi Selker <selker.ravi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Selker",
                    role = c("aut", "cre"),
                    email = "selker.ravi@gmail.com")
as necessary.
checkRd: (-1) scatterD3.Rd:209: Lost braces; missing escapes or markup?
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       | ^
checkRd: (-1) scatterD3.Rd:209: Lost braces
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       |                                              ^
Found the following HTML validation problems:
scatterD3-shiny.html:68:1 (scatterD3-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Uwe Ligges <ligges@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Uwe",
                      family = "Ligges",
                      role = c("aut", "cre"),
                      email = "ligges@statistik.tu-dortmund.de"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut"),
               person(given = "Sarah",
                      family = "Schnackenberg",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
scatterPlotMatrix-shiny.html:68:1 (scatterPlotMatrix-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Amit Frishberg <amfrishberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amit",
                      family = "Frishberg",
                      role = c("aut", "cre"),
                      email = "amfrishberg@gmail.com"),
               person(given = "Naama",
                      family = "Peshes-Yaloz",
                      role = "aut"),
               person(given = "Irit",
                      family = "Gat-Viks",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blair Drummond <blair.robert.drummond@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Blair",
                      family = "Drummomd",
                      role = "aut"),
               person(given = "Mathieu",
                      family = "Dextraze",
                      role = "ctb"),
               person(given = "Blair",
                      family = "Drummond",
                      role = "cre",
                      email = "blair.robert.drummond@gmail.com"))
as necessary.
Maintainer: ‘Xin Shao<xin_shao@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xin",
                    family = "Shao",
                    role = c("aut", "cre"),
                    email = "xin_shao@zju.edu.cn")
as necessary.
Maintainer: ‘Alexander Marx <amarx@mpi-inf.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Marx",
                    role = c("aut", "cre"),
                    email = "amarx@mpi-inf.mpg.de")
as necessary.
Maintainer: ‘Alicja Wolny-Dominiak<woali@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Adamic",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "woali@ue.katowice.pl"))
as necessary.
Maintainer: ‘"Yonas Ghebremichael Weldeselassie" <yonas.weldeselassie@open.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yonas", "Ghebremichael"),
                      family = "Weldeselassie",
                      role = "aut"),
               person(given = "Heather",
                      family = "Whitaker",
                      role = "aut"),
               person(given = "Paddy",
                      family = "Farrington",
                      role = "aut"),
               person(given = c("\"Yonas", "Ghebremichael"),
                      family = "Weldeselassie\"",
                      role = "cre",
                      email = "yonas.weldeselassie@open.ac.uk"))
as necessary.
Found the following HTML validation problems:
Logger.html:171:1 (Logger.Rd:120): Warning: <h5> anchor "Usage" already defined
Logger.html:183:1 (Logger.Rd:130): Warning: <h5> anchor "Arguments" already defined
Logger.html:226:1 (Logger.Rd:159): Warning: <h5> anchor "Usage" already defined
Logger.html:232:1 (Logger.Rd:163): Warning: <h5> anchor "Arguments" already defined
Logger.html:259:1 (Logger.Rd:180): Warning: <h5> anchor "Usage" already defined
Logger.html:265:1 (Logger.Rd:184): Warning: <h5> anchor "Arguments" already defined
Logger.html:292:1 (Logger.Rd:201): Warning: <h5> anchor "Usage" already defined
Logger.html:298:1 (Logger.Rd:205): Warning: <h5> anchor "Arguments" already defined
Logger.html:323:1 (Logger.Rd:220): Warning: <h5> anchor "Usage" already defined
Logger.html:329:1 (Logger.Rd:224): Warning: <h5> anchor "Arguments" already defined
Logger.html:353:1 (Logger.Rd:238): Warning: <h5> anchor "Usage" already defined
Logger.html:359:1 (Logger.Rd:242): Warning: <h5> anchor "Arguments" already defined
LoggerNull.html:111:1 (LoggerNull.Rd:64): Warning: <h5> anchor "Usage" already defined
LoggerNull.html:117:1 (LoggerNull.Rd:68): Warning: <h5> anchor "Arguments" already defined
LoggerNull.html:140:1 (LoggerNull.Rd:81): Warning: <h5> anchor "Usage" already defined
LoggerNull.html:146:1 (LoggerNull.Rd:85): Warning: <h5> anchor "Arguments" already defined
LoggerNull.html:169:1 (LoggerNull.Rd:98): Warning: <h5> anchor "Usage" already defined
LoggerNull.html:175:1 (LoggerNull.Rd:102): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
displayFailure.html:46:1 (displayFailure.Rd:10): Warning: missing </ul> before </div>
displaySuccess.html:50:1 (displaySuccess.Rd:12): Warning: missing </ul> before </div>
print.scdensity.html:52:1 (print.scdensity.Rd:12): Warning: missing </ul> before </div>
print.summary.scdensity.html:51:1 (print.summary.scdensity.Rd:12): Warning: missing </ul> before </div>
summary.scdensity.html:52:1 (summary.scdensity.Rd:12): Warning: missing </ul> before </div>
'library' or 'require' calls not declared from:
  ‘doSNOW’ ‘foreach’ ‘iterators’ ‘reshape’ ‘rlecuyer’ ‘snow’
Found the following HTML validation problems:
session_by_treatment.html:56:1 (session_by_treatment.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nap.R’ ‘randomization_test.R’ ‘scdtb.R’
Found the following HTML validation problems:
dot-error_message.html:70:1 (dot-error_message.Rd:26): Warning: missing </ul> before </div>
dot-shared-parameters.html:40:1 (dot-shared-parameters.Rd:7): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.MultivariateFormula.html:52:1 (print.MultivariateFormula.Rd:12): Warning: missing </ul> before </div>
print.SCGLR.html:51:1 (print.SCGLR.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Daisuke Murakami <dmuraka@ism.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daisuke",
                      family = "Murakami",
                      role = c("cre", "aut"),
                      email = "dmuraka@ism.ac.jp"),
               person(given = "Narumasa",
                      family = "Tsutsumida",
                      role = "ctb"),
               person(given = "Takahiro",
                      family = "Yoshida",
                      role = "ctb"),
               person(given = "Tomoki",
                      family = "Nakaya",
                      role = "ctb"),
               person(given = "Lu",
                      family = "Binbin",
                      role = "ctb"))
as necessary.

The Description field contains
  <arXiv:1905.00266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jeffrey A. Dahlke <jeff.dahlke.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "A."),
                    family = "Dahlke",
                    role = c("aut", "cre"),
                    email = "jeff.dahlke.phd@gmail.com")
as necessary.
Found the following HTML validation problems:
print.html:44:1 (print.Rd:9): Warning: missing </ul> before </div>
Found the following HTML validation problems:
format_authors.html:46:1 (format_authors.Rd:10): Warning: missing </ul> before </div>
tidy_id.html:48:1 (tidy_id.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Stuart Baumann <Stuart@StuartBaumann.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stuart",
                      family = "Baumann",
                      role = c("aut", "cre"),
                      email = "stuart@stuartbaumann.com"),
               person(given = "Margaryta",
                      family = "Klymak",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
scico_data.html:52:1 (scico_data.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Nathan Taback <nathan.taback@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nathan",
                    family = "Taback",
                    role = c("aut", "cre"),
                    email = "nathan.taback@utoronto.ca")
as necessary.
Maintainer: ‘Ashraf Uddin <mdaakib18@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashraf",
                    family = "Uddin",
                    role = c("aut", "cre"),
                    email = "mdaakib18@gmail.com")
as necessary.
Maintainer: ‘Ze Zhang <Ze.Zhang@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ze",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "ze.zhang@utsouthwestern.edu")
as necessary.
Maintainer: ‘Manuel Morales <Manuel.A.Morales@williams.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Manuel",
                      family = "Morales",
                      role = c("aut", "cre"),
                      email = "mmorales@williams.edu"),
               person(given = c("with", "code", "developed", "by", "the", "R", "Development", "Core"),
                      family = "Team",
                      role = "aut"),
               person(given = c("with", "general", "advice", "from", "the", "R-help", "listserv"),
                      family = "community",
                      role = "aut"),
               person(given = c("especially", "Duncan"),
                      family = "Murdoch.",
                      role = "aut"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/sciRmdTheme
which should likely be
  https://github.com/oobianom/sciRmdTheme/issues
instead.
Maintainer: ‘Duc Tran <duct@nevada.unr.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Maintainer: ‘Wenlong Ren <wenlongren@ntu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wenlong",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "wenlongren@ntu.edu.cn")
as necessary.
Maintainer: ‘Shota Ochi <shotaochi1990@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecgca102.Rd’:
    https://doi.org/10.13026/C2X30H
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jaejoon",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "jjsong2@mdanderson.org")
as necessary.
Maintainer: ‘Ed Merkle <merklee@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ed",
                    family = "Merkle",
                    role = c("aut", "cre"),
                    email = "merklee@missouri.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.casestudy.html:51:1 (print.casestudy.Rd:12): Warning: missing </ul> before </div>
print.mcstudy.html:51:1 (print.mcstudy.Rd:12): Warning: missing </ul> before </div>
summary.casestudy.html:51:1 (summary.casestudy.Rd:12): Warning: missing </ul> before </div>
summary.mcstudy.html:51:1 (summary.mcstudy.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_relative_skill.html:92:1 (add_relative_skill.Rd:41): Warning: missing </ul> before </div>
clean_forecast.html:58:1 (clean_forecast.Rd:17): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [ctb] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [ctb] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces
    19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.}
       |                                                                                                    ^
checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.}
       |                                                                                                                                                                                   ^
checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.}
       |                                                                               ^
Maintainer: ‘Debsurya De <debsurya001@gmail.com>’

The Description field contains
  <arXiv:1909.04024> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chakkrit Tantithamthavorn <kla@chakkrit.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chakkrit",
                    family = "Tantithamthavorn",
                    role = c("aut", "cre"),
                    email = "kla@chakkrit.com")
as necessary.
Maintainer: ‘Daniela M. Witten <dwitten@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = c("aut", "cre"),
                      email = "dwitten@uw.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Marlene Marchena <marchenamarlene@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Marchena",
                    role = c("aut", "cre"),
                    email = "marchenamarlene@gmail.com")
as necessary.

The Description field contains
  <arXiv:1009.3977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Peidli <stefanpeidli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefan",
                    family = "Peidli",
                    role = c("aut", "cre"),
                    email = "stefanpeidli@gmail.com")
as necessary.
Found the following HTML validation problems:
dot-inherit_scplot.html:148:1 (dot-inherit_scplot.Rd:74): Warning: missing </ul> before </div>
Maintainer: ‘Julien Boelaert <jubo.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Boelaert",
                    role = c("aut", "cre"),
                    email = "jubo.stats@gmail.com")
as necessary.
Maintainer: ‘Qi Zhang <karlmzhang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pengsheng",
                      family = "Ji",
                      role = "aut"),
               person(given = "Jiashun",
                      family = "Jin",
                      role = "aut"),
               person(given = "Qi",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "karlmzhang@gmail.com"))
as necessary.
Maintainer: ‘Elad Romanov <elad.romanov@gmail.com>’

The Description field contains
  appear). <arXiv:2009.12297>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
reset_array.html:50:1 (reset_array.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Holger Schwender <holger.schw@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Holger",
                      family = "Schwender",
                      role = c("aut", "cre"),
                      email = "holger.schw@gmx.de"),
               person(given = c("with", "a", "contribution", "of", "Arno"),
                      family = "Fritsch",
                      role = "aut"))
as necessary.
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
Maintainer: ‘Sagie Gur-Ari <sagiegurari@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: docs/api.md
    From: README.md
  URI: .github/CONTRIBUTING.md
    From: README.md
checkRd: (-1) scriptloc.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get location of script in a fashion analagous to ${BASH_SOURCE[0]}}
       |                                                          ^
Found the following HTML validation problems:
script_file_get.html:49:1 (script_file_get.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Raphaël Bonnet <raphael.bonnet@univ-cotedazur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Raphael",
                      family = "Bonnet",
                      role = c("aut", "cre")),
               person(given = "Marion",
                      family = "Guernoté",
                      role = "ctb"),
               person(given = "Terry",
                      family = "Gouin",
                      role = "ctb"),
               person(given = "Maxime",
                      family = "Laurens",
                      role = "ctb"),
               person(given = "Thibault",
                      family = "Meekel",
                      role = "ctb"),
               person(given = "Jean-François",
                      family = "Peyron",
                      role = c("aut", "ths")),
               person(given = "Raphaël",
                      family = "Bonnet",
                      role = "cre",
                      email = "raphael.bonnet@univ-cotedazur.fr"))
as necessary.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Qian Yang <bioqianyang@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qian",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "bioqianyang@163.com")
as necessary.
Found the following files/directories:
  ‘untitled_consensus_cluster’
Maintainer: ‘Conor Neilson <condwanaland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conor",
                    family = "Neilson",
                    role = c("aut", "cre"),
                    email = "condwanaland@gmail.com")
as necessary.
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
cost_func.html:58:1 (cost_func.Rd:16): Warning: missing </ul> before </div>
update_C.html:54:1 (update_C.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Osorio <dcosorioh@utexas.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running ‘testthat.R’ [7s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(scUtils)
  > 
  > test_check("scUtils")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plots.R:59:3'): all kinds of colnames are allowed ────────────
  p$labels not equal to list(y = "Dim2", x = "Dim1", colour = "expression").
  Attributes: < names for target but not for current >
  Attributes: < Length mismatch: comparison on first 0 components >
  Length mismatch: comparison on first 2 components
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
is_wholenumber.html:54:1 (is_wholenumber.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Lilun Du <dulilun@ust.hk>’

The Description field contains
  Aggregation", <arXiv:2002.11992>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                  ^
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                                         ^
checkRd: (-1) geom_flat_violin.Rd:7: Lost braces
     7 | url{https://gist.github.com/dgrtwo/eb7750e74997891d7c20}
       |    ^
Maintainer: ‘John R. Ortiz <jrortizt@unal.edu.co>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘plot.Rd’:
    https://doi.org/10.25573/data.13118426.v2
Found the following HTML validation problems:
common_arguments.html:101:1 (common_arguments.Rd:47): Warning: missing </ul> before </div>
print.sdc_distinct_ids.html:70:1 (print.sdc_distinct_ids.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
distributeDraws_cpp.html:65:1 (distributeDraws_cpp.Rd:18): Warning: missing </ul> before </div>
distributeRandom_cpp.html:57:1 (distributeRandom_cpp.Rd:14): Warning: missing </ul> before </div>
randSample_cpp.html:64:1 (randSample_cpp.Rd:18): Warning: missing </ul> before </div>
sampleDonor_cpp.html:80:1 (sampleDonor_cpp.Rd:30): Warning: missing </ul> before </div>
setRisk_cpp.html:61:1 (setRisk_cpp.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) sdc_extabs.Rd:59: Lost braces
    59 | (including ]code{forcelist} variables) that can be used to form tables.}
       |                 ^
Found the following HTML validation problems:
smooth_raster.html:96:1 (smooth_raster.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print-method.html:51:1 (print-method.Rd:13): Warning: missing </ul> before </div>
print.sdcProblem-method.html:51:1 (print.sdcProblem-method.Rd:13): Warning: missing </ul> before </div>
show.sdcProblem-method.html:47:1 (show.sdcProblem-method.Rd:11): Warning: missing </ul> before </div>
summary.sdcProblem-method.html:51:1 (summary.sdcProblem-method.Rd:13): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Stefano Maria Iacus <siacus@iq.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stefano", "Maria"),
                    family = "Iacus",
                    role = c("aut", "cre"),
                    email = "siacus@iq.harvard.edu")
as necessary.
File ‘sde/libs/sde.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>’

The BugReports field in DESCRIPTION has
  https://github.com/egarpor/sdetorus
which should likely be
  https://github.com/egarpor/sdetorus/issues
instead.
Maintainer: ‘Takahiro Shimada <taka.shimada@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takahiro",
                    family = "Shimada",
                    role = c("aut", "cre"),
                    email = "taka.shimada@gmail.com")
as necessary.
Found the following HTML validation problems:
coef.sdmTMB.html:60:1 (coef.sdmTMB.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Junyue Wu <wu.junyue.p1@dc.tohoku.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junyue",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "wu.junyue.p1@dc.tohoku.ac.jp")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sdpdth.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) msdpd.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperpar.Rd:17: Lost braces
    17 | \item{c}{denotes the expected range of eqn{f} .}
       |                                           ^
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
assert_dtc_fmt.html:48:1 (assert_dtc_fmt.Rd:10): Warning: missing </ul> before </div>
ct_spec_vars.html:54:1 (ct_spec_vars.Rd:11): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assign_meta_data.Rd’
Found the following HTML validation problems:
dm.html:61:1 (dm.Rd:17): Warning: missing </ul> before </div>
edc_xx.html:62:1 (edc_xx.Rd:18): Warning: missing </ul> before </div>
spec_XX.html:66:1 (spec_XX.Rd:19): Warning: missing </ul> before </div>
spec_codelists.html:60:1 (spec_codelists.Rd:16): Warning: missing </ul> before </div>
spec_datasets.html:61:1 (spec_datasets.Rd:17): Warning: missing </ul> before </div>
vd.html:58:1 (vd.Rd:16): Warning: missing </ul> before </div>
xx_no_meta_data.html:75:1 (xx_no_meta_data.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Ali Uenlue <ali.uenlue@icloud.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SDT-package.Rd’:
    https://doi.org/10.1007/978-1-4899-2271-7
    https://doi.org/10.1207/S15327965PLI1104_01
    https://doi.org/10.3389/fpsyg.2016.00272
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘internalization.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘plot.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘plot.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘print.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘print.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘simplex.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘summary.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut"))
as necessary.
Maintainer: ‘Jocelyn Chi <jocetchi@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Hsiao, Lin, Wang, Lee, Lu, and Tzeng. (2021+) <arXiv:2105.03228>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wei Qian <weiqian@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "weiqian@stat.umn.edu")
as necessary.
Running examples in ‘seAMLess-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ternaryPlot
> ### Title: Given the immune compositions (ICs) of bulk-RNA samples, this
> ###   function creates a ternary plot similar to ALOT tube from EuroFlow
> ###   analysis and Figure 1E of our paper.
> ### Aliases: ternaryPlot
> 
> ### ** Examples
> 
> library(seAMLess)
> 
> data(minRes)
> ternaryPlot(minRes)
Error in loadNamespace(x) : there is no package called ‘ggtern’
Calls: ternaryPlot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘series.R’
Found the following HTML validation problems:
print.monthglm.html:51:1 (print.monthglm.Rd:12): Warning: missing </ul> before </div>
print.summary.Cosinor.html:51:1 (print.summary.Cosinor.Rd:12): Warning: missing </ul> before </div>
print.summary.monthglm.html:52:1 (print.summary.monthglm.Rd:13): Warning: missing </ul> before </div>
print.summary.nscosinor.html:52:1 (print.summary.nscosinor.Rd:13): Warning: missing </ul> before </div>
rinvgamma.html:49:1 (rinvgamma.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_diagram_by_level.html:59:1 (create_diagram_by_level.Rd:16): Warning: missing </ul> before </div>
crps_aux.html:51:1 (crps_aux.Rd:12): Warning: missing </ul> before </div>
crps_aux_esc.html:51:1 (crps_aux_esc.Rd:12): Warning: missing </ul> before </div>
delete_redundant_files.html:46:1 (delete_redundant_files.Rd:10): Warning: missing </ul> before </div>
download_chirps_monthly_high.html:58:1 (download_chirps_monthly_high.Rd:20): Warning: missing </ul> before </div>
download_chirps_monthly_low.html:63:1 (download_chirps_monthly_low.Rd:23): Warning: missing </ul> before </div>
modify_dt_map_plotting.html:50:1 (modify_dt_map_plotting.Rd:12): Warning: missing </ul> before </div>
season_strings_to_int.html:46:1 (season_strings_to_int.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Isabella Bitetto <bitetto@coispa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabella",
                      family = "Bitetto",
                      role = c("aut", "cre"),
                      email = "bitetto@coispa.it",
                      comment = "COISPA"),
               person(given = "Loretta",
                      family = "Malvarosa",
                      role = "aut",
                      comment = "NISEA"),
               person(given = c("Maria", "Teresa"),
                      family = "Spedicato",
                      role = "aut",
                      comment = "COISPA"),
               person(given = "Ralf",
                      family = "Doering",
                      role = "aut",
                      comment = "THUENEN"),
               person(given = "Joerg",
                      family = "Berkenhagen",
                      role = "aut",
                      comment = "THUENEN"))
as necessary.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.

The Description field contains
  <arXiv:1105.2334v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
share_secret_with_key.html:58:1 (share_secret_with_key.Rd:16): Warning: missing </ul> before </div>
share_secret_with_key1.html:58:1 (share_secret_with_key1.Rd:16): Warning: missing </ul> before </div>
store_secret_with_key.html:58:1 (store_secret_with_key.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Danielle Quinn <danielle.quinn@mun.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danielle",
                    family = "Quinn",
                    role = c("aut", "cre"),
                    email = "danielle.quinn@mun.ca")
as necessary.
Found the following HTML validation problems:
initialize_ss.html:50:1 (initialize_ss.Rd:12): Warning: missing </ul> before </div>
matmult3d.html:46:1 (matmult3d.Rd:10): Warning: missing </ul> before </div>
pct.html:46:1 (pct.Rd:10): Warning: missing </ul> before </div>
substr_r.html:50:1 (substr_r.Rd:12): Warning: missing </ul> before </div>
ts_c.html:52:1 (ts_c.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Jae Keun Yoo <peter.yoo@ewha.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae", "Keun"),
                      family = "Yoo",
                      role = c("aut", "cre"),
                      email = "peter.yoo@ewha.ac.kr"),
               person(given = "Bo-Young",
                      family = "Kim",
                      role = "aut"))
as necessary.
checkRd: (-1) seedCCA.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{u}{numeric, maximum number of projections. The default is 10. This is used for \code{type="seed1"}, \code{type="seed2"} and {tyepe="pls"}.}
       |                                                                                                                                   ^
Found the following HTML validation problems:
print.textmodel_lda.html:51:1 (print.textmodel_lda.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
assert_flag_or_scalar_integerish.html:51:1 (assert_flag_or_scalar_integerish.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SE.EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘SE.EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘SE.EQ.dissolution.profiles.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Found the following HTML validation problems:
logspec.dist.html:78:1 (logspec.dist.Rd:39): Warning: <h3> anchor "_sec_note" already defined
sh.html:94:1 (sh.Rd:65): Warning: <h3> anchor "_sec_note" already defined
spectro.html:346:1 (spectro.Rd:166): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
DynProg_algo_cpp.html:51:1 (DynProg_algo_cpp.Rd:12): Warning: missing </ul> before </div>
Gmixt_algo_cpp.html:70:1 (Gmixt_algo_cpp.Rd:22): Warning: missing </ul> before </div>
Gmixt_simultanee_fullcpp.html:62:1 (Gmixt_simultanee_fullcpp.Rd:18): Warning: missing </ul> before </div>
apply_rowSums.html:50:1 (apply_rowSums.Rd:12): Warning: missing </ul> before </div>
arma_repmat.html:54:1 (arma_repmat.Rd:14): Warning: missing </ul> before </div>
augment.html:50:1 (augment.Rd:12): Warning: missing </ul> before </div>
colsums_sapply.html:62:1 (colsums_sapply.Rd:18): Warning: missing </ul> before </div>
cumsum_cpp.html:46:1 (cumsum_cpp.Rd:10): Warning: missing </ul> before </div>
likelihood.html:50:1 (likelihood.Rd:12): Warning: missing </ul> before </div>
prep_segm_HMM.html:50:1 (prep_segm_HMM.Rd:12): Warning: missing </ul> before </div>
prep_segm_shiftfit.html:50:1 (prep_segm_shiftfit.Rd:12): Warning: missing </ul> before </div>
segclust_internal.html:97:1 (segclust_internal.Rd:43): Warning: missing </ul> before </div>
stat_segm_HMM.html:58:1 (stat_segm_HMM.Rd:16): Warning: missing </ul> before </div>
stat_segm_shiftfit.html:58:1 (stat_segm_shiftfit.Rd:16): Warning: missing </ul> before </div>
subsample_rename.html:55:1 (subsample_rename.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Eleni Ioanna Delatola <eldelatola@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eleni", "Ioanna"),
                      family = "Delatola",
                      role = c("aut", "cre"),
                      email = "eldelatola@yahoo.gr"),
               person(given = "Emilie",
                      family = "Lebarbier",
                      role = "aut"),
               person(given = "Tristan",
                      family = "Mary-Huard",
                      role = "aut"),
               person(given = "Francois",
                      family = "Radvanyi",
                      role = "aut"),
               person(given = "Stephane",
                      family = "Robin",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Wong",
                      role = "aut"))
as necessary.
Maintainer: ‘Rainer Machne <raim@tbi.univie.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Machne",
                      role = c("aut", "cre"),
                      email = "raim@tbi.univie.ac.at"),
               person(given = c("Douglas", "B."),
                      family = "Murray",
                      role = "aut"),
               person(given = c("Peter", "F."),
                      family = "Stadler",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ash.html:49:1 (ash.Rd:10): Warning: missing </ul> before </div>
backtrace.html:67:1 (backtrace.Rd:21): Warning: missing </ul> before </div>
log_1.html:47:1 (log_1.Rd:10): Warning: missing </ul> before </div>
plot.segments.html:85:1 (plot.segments.Rd:35): Warning: missing </ul> before </div>
plot.timeseries.html:74:1 (plot.timeseries.Rd:28): Warning: missing </ul> before </div>
plotSegmentation.html:80:1 (plotSegmentation.Rd:30): Warning: missing </ul> before </div>
plotdev.html:64:1 (plotdev.Rd:20): Warning: missing </ul> before </div>
print.segments.html:51:1 (print.segments.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Thales Mello <thalesmello@gmail.com>’

The Description field contains
  Leonardi (2018) <arXiv:1501.01756>. The Berlin weather sample dataset
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michelle Picoli <mipicoli@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plot.html:198:1 (plot.Rd:105): Warning: missing </ul> before </div>
Maintainer: ‘Danilo C Vieira <vieiradc@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Danilo", "C"),
                      family = "Vieira",
                      role = c("aut", "cre"),
                      email = "vieiradc@yahoo.com.br"),
               person(given = "Gustavo",
                      family = "Fonseca",
                      role = "aut",
                      email = "gfonseca.unifesp@gmail.com"),
               person(given = c("Fabio", "Cop"),
                      family = "Ferreira",
                      role = "aut",
                      email = "fabiocferreira.unifesp@gmail.com"),
               person(given = c("with", "contributions", "from", "Marco", "Colossi"),
                      family = "Brustolin.",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot.SEIRfansy.html:56:1 (plot.SEIRfansy.Rd:14): Warning: missing </ul> before </div>
plot.SEIRfansyPredict.html:56:1 (plot.SEIRfansyPredict.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Qingyuan Zhao <qingyzhao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hera",
                      family = "He",
                      role = "aut"),
               person(given = "Murat",
                      family = "Erdogdu",
                      role = "aut"),
               person(given = "Qingyuan",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "qingyzhao@gmail.com"))
as necessary.
Maintainer: ‘Heewon Jeon <madjakarta@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Heewon",
                    family = "Jeon",
                    role = c("aut", "cre"),
                    email = "madjakarta@gmail.com")
as necessary.

The Description field contains
  Sejong(http://www.sejong.or.kr/) corpus and
  Hannanum(http://semanticweb.kaist.ac.kr/home/index.php/HanNanum)
Please enclose URLs in angle brackets (<...>).
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘selcorr.R’
Maintainer: ‘Xuefei Mi <mi_xue_fei@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuefei",
                      family = "Mi",
                      role = c("aut", "cre"),
                      email = "mi_xue_fei@hotmail.com"),
               person(given = "Jose",
                      family = "Marulanda",
                      role = "aut"),
               person(given = c("H.", "Friedrich"),
                      family = "Utz",
                      role = "aut"),
               person(given = c("Albrecht", "E."),
                      family = "Melchinger",
                      role = "aut",
                      comment = "Project contact person: Melchinger@uni-hohenheim.de"))
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ryan",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = c("aut", "cre"),
                      email = "tibs@stanford.edu"),
               person(given = "Jonathan",
                      family = "Taylor",
                      role = "aut"),
               person(given = "Joshua",
                      family = "Loftus",
                      role = "aut"),
               person(given = "Stephen",
                      family = "Reid",
                      role = "aut"),
               person(given = "Jelena",
                      family = "Markovic",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:393:1 (inst/NEWS.Rd:274): Warning: missing </ul> before </div>
NEWS.html:67:1 (inst/NEWS.Rd:37): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:96:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:114:1 (inst/NEWS.Rd:75): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:127:1 (inst/NEWS.Rd:85): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:146:1 (inst/NEWS.Rd:99): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:166:1 (inst/NEWS.Rd:115): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:205:1 (inst/NEWS.Rd:144): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:221:1 (inst/NEWS.Rd:155): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:236:1 (inst/NEWS.Rd:165): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:258:1 (inst/NEWS.Rd:181): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:299:1 (inst/NEWS.Rd:211): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:328:1 (inst/NEWS.Rd:231): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:351:1 (inst/NEWS.Rd:247): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:368:1 (inst/NEWS.Rd:259): Warning: <h4> anchor "NEW-FEATURES" already defined
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.list.selenider_elements.Rd’ ‘elem_ancestors.Rd’ ‘elem_attr.Rd’
    ‘elem_cache.Rd’ ‘elem_click.Rd’ ‘elem_css_property.Rd’
    ‘elem_equal.Rd’ ‘elem_expect.Rd’ ‘elem_expect_all.Rd’
    ‘elem_filter.Rd’ ‘elem_flatten.Rd’ ‘elem_hover.Rd’ ‘elem_name.Rd’
    ‘elem_scroll_to.Rd’ ‘elem_select.Rd’ ‘elem_size.Rd’ ‘elem_text.Rd’
    ‘find_each_element.Rd’ ‘find_element.Rd’ ‘find_elements.Rd’
    ‘get_actual_element.Rd’ ‘s.Rd’
Found the following HTML validation problems:
chromote_options.html:132:1 (chromote_options.Rd:68): Warning: missing </ul> before </div>
Found the following HTML validation problems:
SccsData-class.html:53:1 (SccsData-class.Rd:16): Warning: missing </ul> before </div>
SccsIntervalData-class.html:54:1 (SccsIntervalData-class.Rd:16): Warning: missing </ul> before </div>
migrateDataModel.html:57:1 (migrateDataModel.Rd:14): Warning: missing </ul> before </div>
saveExposuresOutcomeList.html:50:1 (saveExposuresOutcomeList.Rd:12): Warning: missing </ul> before </div>
saveSccsAnalysisList.html:50:1 (saveSccsAnalysisList.Rd:12): Warning: missing </ul> before </div>
uploadResults.html:91:1 (uploadResults.Rd:41): Warning: missing </ul> before </div>
Maintainer: ‘Jie Qiao <qiaojie2004@vip.qq.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
mmpcAnm.html:46:1 (mmpcAnm.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjoern",
                    family = "Bornkamp",
                    role = c("aut", "cre"),
                    email = "bbnkmp@mail.de")
as necessary.
Found the following HTML validation problems:
validate_tab_name.html:46:1 (validate_tab_name.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Divyansh Agarwal <divyansh@upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Divyansh", "Agarwal", "Nancy", "R.", "Zhang"),
                      family = "<nzh@wharton.upenn.edu>",
                      role = "aut",
                      email = "nzh@wharton.upenn.edu"),
               person(given = "Divyansh",
                      family = "Agarwal",
                      role = "cre",
                      email = "divyansh@upenn.edu"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marko",
                    family = "Robnik-Sikonja",
                    role = c("aut", "cre"),
                    email = "marko.robnik@fri.uni-lj.si")
as necessary.
Maintainer: ‘Yiran Zhang <yiz038@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yiran",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "yiz038@health.ucsd.edu")
as necessary.

The Description field contains
  Zhang, Y. and Xu, R. (2022) <arXiv:2204.10426>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee15239@gmail.com"),
               person(given = "Catherine",
                      family = "Lee",
                      role = "aut"),
               person(given = "Danilo",
                      family = "Alvares",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Haneuse",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
old.functions.html:54:1 (old.functions.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Jinhua Su <944866518@qq.com>’

The Description field contains
  method<arXiv:2108.07928> is an improved method of two-step NR iteration
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Agnieszka Listwon-Krol <krol@lunenfeld.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Agnieszka",
                      family = "Listwon-Krol",
                      role = c("aut", "cre"),
                      email = "krol@lunenfeld.ca"),
               person(given = "Philippe",
                      family = "Saint-Pierre",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
compute_itcriteria_weights.html:47:1 (compute_itcriteria_weights.Rd:11): Warning: missing </ul> before </div>
cor_rsq.html:58:1 (cor_rsq.Rd:16): Warning: missing </ul> before </div>
dot_component_mm.html:50:1 (dot_component_mm.Rd:12): Warning: missing </ul> before </div>
dot_subcomponent_mm.html:54:1 (dot_subcomponent_mm.Rd:14): Warning: missing </ul> before </div>
esc_node.html:46:1 (esc_node.Rd:10): Warning: missing </ul> before </div>
extract_bootstrapped_values.html:58:1 (extract_bootstrapped_values.Rd:16): Warning: missing </ul> before </div>
extract_mm_coding.html:46:1 (extract_mm_coding.Rd:10): Warning: missing </ul> before </div>
extract_mm_edge_value.html:58:1 (extract_mm_edge_value.Rd:16): Warning: missing </ul> before </div>
extract_mm_edges.html:58:1 (extract_mm_edges.Rd:16): Warning: missing </ul> before </div>
extract_mm_nodes.html:54:1 (extract_mm_nodes.Rd:14): Warning: missing </ul> before </div>
get_global_htmt_style.html:50:1 (get_global_htmt_style.Rd:12): Warning: missing </ul> before </div>
get_global_style.html:50:1 (get_global_style.Rd:12): Warning: missing </ul> before </div>
get_mm_edge_style.html:54:1 (get_mm_edge_style.Rd:14): Warning: missing </ul> before </div>
get_mm_node_style.html:46:1 (get_mm_node_style.Rd:10): Warning: missing </ul> before </div>
predict_DA.html:56:1 (predict_DA.Rd:15): Warning: missing </ul> before </div>
predict_EA.html:56:1 (predict_EA.Rd:15): Warning: missing </ul> before </div>
print.seminr_pls_mga.html:55:1 (print.seminr_pls_mga.Rd:14): Warning: missing </ul> before </div>
report_missing.html:46:1 (report_missing.Rd:10): Warning: missing </ul> before </div>
seminr_theme_get.html:50:1 (seminr_theme_get.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
CompC.html:73:1 (CompC.Rd:25): Warning: missing </ul> before </div>
Distance.html:50:1 (Distance.Rd:12): Warning: missing </ul> before </div>
Longfun.html:58:1 (Longfun.Rd:16): Warning: missing </ul> before </div>
SearchIndicate.html:50:1 (SearchIndicate.Rd:12): Warning: missing </ul> before </div>
genData.html:46:1 (genData.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
gen_userp.html:202:1 (gen_userp.Rd:68): Warning: <h4> anchor "+E2+80+98gen_userp+E2+80+99" already defined
gen_userp.html:217:1 (gen_userp.Rd:81): Warning: <h4> anchor "+E2+80+98gen_sem_out_userp+E2+80+99" already defined
checkRd: (-1) NRW.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NRW.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:57-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:31-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:47: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  convert2igraph.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Unknown package ‘spreadr’ in Rd xrefs
Found the following HTML validation problems:
anova-lgc-method.html:51:1 (anova-lgc-method.Rd:12): Warning: missing </ul> before </div>
summary-lgc-method.html:51:1 (summary-lgc-method.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
checkBounded.html:58:1 (checkBounded.Rd:16): Warning: missing </ul> before </div>
checkEllipsis.html:46:1 (checkEllipsis.Rd:10): Warning: missing </ul> before </div>
checkPositive.html:50:1 (checkPositive.Rd:12): Warning: missing </ul> before </div>
checkPositiveDefinite.html:54:1 (checkPositiveDefinite.Rd:14): Warning: missing </ul> before </div>
checkSquare.html:50:1 (checkSquare.Rd:12): Warning: missing </ul> before </div>
checkSymmetricSquare.html:50:1 (checkSymmetricSquare.Rd:12): Warning: missing </ul> before </div>
semPower.showPlot.html:62:1 (semPower.showPlot.Rd:18): Warning: missing </ul> before </div>
summary.semPower.aPriori.html:51:1 (summary.semPower.aPriori.Rd:12): Warning: missing </ul> before </div>
summary.semPower.compromise.html:51:1 (summary.semPower.compromise.Rd:12): Warning: missing </ul> before </div>
summary.semPower.postHoc.html:51:1 (summary.semPower.postHoc.Rd:12): Warning: missing </ul> before </div>
validateInput.html:158:1 (validateInput.Rd:78): Warning: missing </ul> before </div>
Found the following HTML validation problems:
split_input.html:46:1 (split_input.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.semtree.html:53:1 (coef.semtree.Rd:14): Warning: missing </ul> before </div>
diversityMatrix.html:54:1 (diversityMatrix.Rd:14): Warning: missing </ul> before </div>
fitSubmodels.html:74:1 (fitSubmodels.Rd:28): Warning: missing </ul> before </div>
kl.html:59:1 (kl.Rd:18): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
semVer.html:121:1 (semVer.Rd:79): Warning: <h5> anchor "Usage" already defined
semVer.html:127:1 (semVer.Rd:83): Warning: <h5> anchor "Arguments" already defined
semVer.html:143:1 (semVer.Rd:93): Warning: <h5> anchor "Returns" already defined
semVer.html:150:1 (semVer.Rd:96): Warning: <h5> anchor "Examples" already defined
semVer.html:168:1 (semVer.Rd:109): Warning: <h5> anchor "Usage" already defined
semVer.html:174:1 (semVer.Rd:113): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
print.sg_mail.html:51:1 (print.sg_mail.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) sendmail_options.Rd:32-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:38-39: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
model_helper.html:54:1 (model_helper.Rd:14): Warning: missing </ul> before </div>
plot.sensemakr.html:60:1 (plot.sensemakr.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Found the following HTML validation problems:
pcoriaccel_estimate_pmf.html:66:1 (pcoriaccel_estimate_pmf.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "R."),
                      family = "Rosenbaum",
                      role = c("aut", "cre"),
                      email = "rosenbaum@wharton.upenn.edu"),
               person(given = c("Dylan", "S."),
                      family = "Small",
                      role = "aut"))
as necessary.
Maintainer: ‘Bo Zhang <bozhan@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "bozhan@wharton.upenn.edu")
as necessary.

The Description field contains
  B., Small, D. S. (2018). <arXiv:1812.00215>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dylan Small <dsmall@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dylan",
                    family = "Small",
                    role = c("aut", "cre"),
                    email = "dsmall@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Ibtihel Rebhi <ibtihel.rebhi@enit.utm.tn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ibtihel",
                      family = "Rebhi",
                      role = c("aut", "cre"),
                      email = "ibtihel.rebhi@enit.utm.tn"),
               person(given = "Dhafer",
                      family = "Malouche",
                      role = "ctb"))
as necessary.
Found the following HTML validation problems:
effects.html:123:1 (effects.Rd:73): Warning: missing </ul> before </div>
partdevs.html:160:1 (partdevs.Rd:107): Warning: missing </ul> before </div>
plot.effectsMed.html:89:1 (plot.effectsMed.Rd:36): Warning: missing </ul> before </div>
stderrs.html:131:1 (stderrs.Rd:79): Warning: missing </ul> before </div>
Maintainer: ‘Brian C. Franczak <bfrancza@math.mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cre"),
                      email = "bfrancza@math.mcmaster.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Maintainer: ‘Kjetil B Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kjetil", "B"),
                    family = "Halvorsen",
                    role = c("aut", "cre"),
                    email = "kjetil1001@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘E1.19.Rd’:
    \concept{Data on Book Prices, Pages and Type of Bi [TRUNCATED]
  File ‘E2.9.Rd’:
    \concept{Data on Capital, Labour and Value Added f [TRUNCATED]
  File ‘E4.11.Rd’:
    \concept{ Data on Cost of Repairing Starters, Ring [TRUNCATED]
  File ‘E7.2.Rd’:
    \concept{Prices of Crude Oil, Natural Gas, Bitumin [TRUNCATED]
  File ‘E9.3.Rd’:
    \concept{ Areas, lengths and widths of rectangles  [TRUNCATED]
  File ‘E9.8.Rd’:
    \concept{ Data on monthly rent, annual income and  [TRUNCATED]
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
get_default_embedding.html:54:1 (get_default_embedding.Rd:14): Warning: missing </ul> before </div>
read_embedding.html:56:1 (read_embedding.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
get_sentences2.html:50:1 (get_sentences2.Rd:12): Warning: missing </ul> before </div>
print.extract_emotion_terms.html:51:1 (print.extract_emotion_terms.Rd:12): Warning: missing </ul> before </div>
print.extract_profanity_terms.html:51:1 (print.extract_profanity_terms.Rd:12): Warning: missing </ul> before </div>
print.extract_sentiment_terms.html:51:1 (print.extract_sentiment_terms.Rd:12): Warning: missing </ul> before </div>
print.validate_sentiment.html:51:1 (print.validate_sentiment.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
sentometrics-defunct.html:91:1 (sentometrics-defunct.Rd:77): Warning: missing </ul> before </div>
Found the following HTML validation problems:
capture_function_calls.html:46:1 (capture_function_calls.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Brian Greenhill <bgreenhill@albany.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "D."),
                      family = "Greenhill",
                      role = "aut"),
               person(given = c("Michael", "D."),
                      family = "Ward",
                      role = "aut"),
               person(given = "Audrey",
                      family = "Sacks",
                      role = "aut"),
               person(given = "Brian",
                      family = "Greenhill",
                      role = "cre",
                      email = "bgreenhill@albany.edu"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Inder Tecuapetla-Gómez [cre, aut] (0000-0001-6251-972X), Fanny Galicia-Gómez [ctb], Francisco Rosales-Marticorena [ctb]’
  Authors@R: ‘Inder Tecuapetla-Gómez [cre, aut] (ORDIC: 0000-0001-6251-972X), Fanny Galicia-Gómez [ctb], Francisco Rosales-Marticorena [ctb]’
Maintainer: ‘Lewis A. Jones <LewisA.Jones@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiaoshu Zhu <xiaoshuzhu@westat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoshu",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "xiaoshuzhu@westat.com"),
               person(given = "Sharon",
                      family = "Lohr",
                      role = "aut"))
as necessary.
Maintainer: ‘Dalibor Krleža <dalibor.krleza@fer.hr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dalibor",
                    family = "Krleža",
                    role = c("aut", "cre"),
                    email = "dalibor.krleza@fer.hr")
as necessary.
Specified C++14: please drop specification unless essential
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
setInputDefinitions,HybridSequenceClassifier-method.html:72:1 (setInputDefinitions,HybridSequenceClassifier-method.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Bettina Budeus <bettina.budeus@stud.uni-due.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bettina",
                    family = "Budeus",
                    role = c("aut", "cre"),
                    email = "bettina.budeus@stud.uni-due.de")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘assocpointpair_result.csv’ ‘foundereffectfinder_result.csv’
  ‘getfreqs_result.csv’ ‘getfreqs_result.png’ ‘orPlot.pdf1_1.pdf’
  ‘orPlot.pdf2_1.pdf’ ‘orPlot.pdf3_1.pdf’ ‘orPlot.pdf4_1.pdf’
  ‘orPlot.pdf5_1.pdf’ ‘orPlot.pdf6_1.pdf’ ‘orPlot.pdf7_1.pdf’
  ‘orPlot.pdf8_1.pdf’ ‘q-values_result.csv’ ‘rewritetuple_result.csv’
  ‘tartan_plot.pdf’ ‘vispair_plot.pdf’ ‘vispairfeat_plot.pdf’
  ‘volcano_plot.pdf’
Found the following HTML validation problems:
data_to_stslist.html:75:1 (data_to_stslist.Rd:30): Warning: missing </ul> before </div>
emission_probs.html:58:1 (emission_probs.Rd:22): Warning: missing </ul> before </div>
get_marginals.html:94:1 (get_marginals.Rd:36): Warning: missing </ul> before </div>
gridplot.html:129:1 (gridplot.Rd:70): Warning: missing </ul> before </div>
initial_probs.html:58:1 (initial_probs.Rd:22): Warning: missing </ul> before </div>
nobs.html:63:1 (nobs.Rd:21): Warning: missing </ul> before </div>
predict.html:104:1 (predict.Rd:51): Warning: missing </ul> before </div>
simulate_pars.html:81:1 (simulate_pars.Rd:35): Warning: missing </ul> before </div>
sort_sequences.html:65:1 (sort_sequences.Rd:23): Warning: missing </ul> before </div>
summary.mnhmm.html:51:1 (summary.mnhmm.Rd:12): Warning: missing </ul> before </div>
transition_probs.html:58:1 (transition_probs.Rd:22): Warning: missing </ul> before </div>
update_nhmm.html:64:1 (update_nhmm.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Niklas Pfister <pfister@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Niklas",
                      family = "Pfister",
                      role = c("aut", "cre"),
                      email = "pfister@stat.math.ethz.ch"),
               person(given = "Jonas",
                      family = "Peters",
                      role = "aut"))
as necessary.
Maintainer: ‘Paul C. Boutros <pboutros@mednet.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fouad",
                      family = "Yousif",
                      role = "aut"),
               person(given = "Xihui",
                      family = "Lin",
                      role = "aut"),
               person(given = "Fan",
                      family = "Fan",
                      role = "aut"),
               person(given = "Christopher",
                      family = "Lalansingh",
                      role = "aut"),
               person(given = "John",
                      family = "Macdonald",
                      role = "aut"),
               person(given = c("Paul", "C."),
                      family = "Boutros",
                      role = "cre",
                      email = "pboutros@mednet.ucla.edu"))
as necessary.
Maintainer: ‘Mingli Lei<leimingli2013@sjtu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingli",
                      family = "Lei",
                      role = c("aut", "cre"),
                      email = "leimingli2013@sjtu.edu.cn"),
               person(given = "Jia",
                      family = "Xu",
                      role = "aut"),
               person(given = "Li-Ching",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lily",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jing",
                      family = "Li",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘consensus.R’
Found the following HTML validation problems:
isURL.html:46:1 (isURL.Rd:10): Warning: missing </ul> before </div>
verifyFilename.html:52:1 (verifyFilename.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Hui Zheng <hzheng1@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "A"),
                      family = "Schoenfeld",
                      role = "aut"),
               person(given = "Hui",
                      family = "Zheng",
                      role = c("aut", "cre"),
                      email = "hzheng1@mgh.harvard.edu"))
as necessary.
Found the following HTML validation problems:
SEQexpand.html:46:1 (SEQexpand.Rd:10): Warning: missing </ul> before </div>
clean_fastglm.html:46:1 (clean_fastglm.Rd:10): Warning: missing </ul> before </div>
inline.pred.html:66:1 (inline.pred.Rd:24): Warning: missing </ul> before </div>
internal.plot.html:50:1 (internal.plot.Rd:12): Warning: missing </ul> before </div>
internal.weights.html:54:1 (internal.weights.Rd:14): Warning: missing </ul> before </div>
prepare.data.html:58:1 (prepare.data.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
MakeAgePrior.html:280:1 (MakeAgePrior.Rd:180): Warning: <h3> anchor "MaxAgeParent" already defined
MergeFill.html:65:1 (MergeFill.Rd:20): Warning: missing </ul> before </div>
MkAPdefault.html:54:1 (MkAPdefault.Rd:14): Warning: missing </ul> before </div>
writeColumns.html:62:1 (writeColumns.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dbGetInfo.html:50:1 (dbGetInfo.Rd:13): Warning: missing </ul> before </div>
format.DrillConnection.html:51:1 (format.DrillConnection.Rd:12): Warning: missing </ul> before </div>
print.drill_conn.html:51:1 (print.drill_conn.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Martin Seilmayer <m.seilmayer@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "m.seilmayer@hzdr.de")
as necessary.
Found the following HTML validation problems:
isOpen.html:50:1 (isOpen.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Edward Schuberg <eschu003@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edward",
                    family = "Schuberg",
                    role = c("aut", "cre"),
                    email = "eschu003@ucr.edu")
as necessary.
Found the following HTML validation problems:
madansky.fun.html:58:1 (madansky.fun.Rd:16): Warning: missing </ul> before </div>
mr.fun.html:54:1 (mr.fun.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_seroprev_counts_by_bin.html:77:1 (get_seroprev_counts_by_bin.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Oisín Ryan <o.ryan@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oisín",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "o.ryan@uu.nl")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/ryanoisin/SEset
which should likely be
  https://github.com/ryanoisin/SEset/issues
instead.
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
Maintainer: ‘Rakshitha Godahewa <rakshithagw@gmail.com>’

The Description field contains
  in Godahewa et al. (2022) <arXiv:2211.08661v1>. The model uses the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhi Jin <nalanchongxuan@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhi",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "nalanchongxuan@163.com"),
               person(given = "Jing",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Found the following HTML validation problems:
CheckLayersName.html:50:1 (CheckLayersName.Rd:12): Warning: missing </ul> before </div>
SeuratObject-options.html:99:1 (SeuratObject-options.Rd:47): Warning: missing </ul> before </div>
SparseEmptyMatrix.html:50:1 (SparseEmptyMatrix.Rd:12): Warning: missing </ul> before </div>
Theta.html:46:1 (Theta.Rd:10): Warning: missing </ul> before </div>
dot-GetConsensusFeatures.html:61:1 (dot-GetConsensusFeatures.Rd:18): Warning: missing </ul> before </div>
dot-GetVariableFeatures.html:68:1 (dot-GetVariableFeatures.Rd:23): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Joiner.Rd’ ‘Splitter.Rd’ ‘add_node.Rd’ ‘print.sewage_pipeline.Rd’
    ‘pull_output.Rd’ ‘run.Rd’
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sfaendog.Rd’:
    https://doi.org/10.1016/0304-4076(87)90015-7
    https://doi.org/10.1093/ajae/aaw077
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘h_curve.Rd’ ‘sfc_4x4_meander.Rd’ ‘sfc_generator.Rd’
    ‘spacefilling.Rd’
Found the following HTML validation problems:
check_pkg_suggests.html:46:1 (check_pkg_suggests.Rd:10): Warning: missing </ul> before </div>
class_modify.html:50:1 (class_modify.Rd:12): Warning: missing </ul> before </div>
jc_clc_perm_impl.html:58:1 (jc_clc_perm_impl.Rd:16): Warning: missing </ul> before </div>
local_g_spt.html:67:1 (local_g_spt.Rd:20): Warning: missing </ul> before </div>
local_moran_bv_calc.html:50:1 (local_moran_bv_calc.Rd:12): Warning: missing </ul> before </div>
local_moran_bv_impl.html:58:1 (local_moran_bv_impl.Rd:16): Warning: missing </ul> before </div>
local_moran_bv_perm_impl.html:54:1 (local_moran_bv_perm_impl.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
File ‘sfheaders/libs/sfheaders.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘st_transform_outline.R’
Maintainer: ‘Kevin Titeca <sfinxinteractomics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
s2.html:50:1 (s2.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dbDataType.html:56:1 (dbDataType.Rd:15): Warning: missing </ul> before </div>
dbWriteTable.html:113:1 (dbWriteTable.Rd:58): Warning: missing </ul> before </div>
dot-stop_geos.html:46:1 (dot-stop_geos.Rd:10): Warning: missing </ul> before </div>
is_driver_available.html:51:1 (is_driver_available.Rd:13): Warning: missing </ul> before </div>
is_driver_can.html:56:1 (is_driver_can.Rd:15): Warning: missing </ul> before </div>
is_geometry_column.html:54:1 (is_geometry_column.Rd:14): Warning: missing </ul> before </div>
rawToHex.html:46:1 (rawToHex.Rd:10): Warning: missing </ul> before </div>
st_as_grob.html:50:1 (st_as_grob.Rd:12): Warning: missing </ul> before </div>
stars.html:167:1 (stars.Rd:89): Warning: missing </ul> before </div>
summary.sfc.html:59:1 (summary.sfc.Rd:16): Warning: missing </ul> before </div>
vctrs.html:72:1 (vctrs.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Utz-Uwe Haus <uhaus@cray.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following (possibly) invalid file URIs:
  URI: github
    From: README.md
  URI: Win-Builder
    From: README.md
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SFS.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Mohamed Laib <laib.med@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mohamed",
                      family = "Laib",
                      role = c("aut", "cre"),
                      email = "laib.med@gmail.com"),
               person(given = "Mikhail",
                      family = "Kanevski",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
Print_sftrack_objects.html:59:1 (Print_sftrack_objects.Rd:17): Warning: missing </ul> before </div>
Print_sftraj_objects.html:59:1 (Print_sftraj_objects.Rd:17): Warning: missing </ul> before </div>
active_group_replace.html:59:1 (active_group_replace.Rd:22): Warning: missing </ul> before </div>
calc_sort_index.html:50:1 (calc_sort_index.Rd:12): Warning: missing </ul> before </div>
check_NA_coords.html:46:1 (check_NA_coords.Rd:10): Warning: missing </ul> before </div>
check_NA_group.html:46:1 (check_NA_group.Rd:10): Warning: missing </ul> before </div>
check_group_id.html:46:1 (check_group_id.Rd:10): Warning: missing </ul> before </div>
check_group_names.html:46:1 (check_group_names.Rd:10): Warning: missing </ul> before </div>
check_names_exist.html:50:1 (check_names_exist.Rd:12): Warning: missing </ul> before </div>
check_ordered.html:54:1 (check_ordered.Rd:14): Warning: missing </ul> before </div>
check_t_regular.html:46:1 (check_t_regular.Rd:10): Warning: missing </ul> before </div>
check_time.html:46:1 (check_time.Rd:10): Warning: missing </ul> before </div>
dup_timestamp.html:50:1 (dup_timestamp.Rd:12): Warning: missing </ul> before </div>
group_labels.html:55:1 (group_labels.Rd:19): Warning: missing </ul> before </div>
group_name.html:55:1 (group_name.Rd:20): Warning: missing </ul> before </div>
is_linestring.html:50:1 (is_linestring.Rd:10): Warning: missing </ul> before </div>
merge_traj.html:46:1 (merge_traj.Rd:10): Warning: missing </ul> before </div>
new_sftrack.html:62:1 (new_sftrack.Rd:18): Warning: missing </ul> before </div>
new_sftraj.html:62:1 (new_sftraj.Rd:18): Warning: missing </ul> before </div>
step_recalc.html:51:1 (step_recalc.Rd:12): Warning: missing </ul> before </div>
summary_sftrack.html:46:1 (summary_sftrack.Rd:10): Warning: missing </ul> before </div>
which_duplicated.html:54:1 (which_duplicated.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Monique Graf <monique.p.n.graf@bluewin.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monique",
                    family = "Graf",
                    role = c("aut", "cre"),
                    email = "monique.p.n.graf@bluewin.ch")
as necessary.
Found the following HTML validation problems:
cpp.airwls.glmfit.html:105:1 (cpp.airwls.glmfit.Rd:45): Warning: missing </ul> before </div>
cpp.airwls.glmstep.html:90:1 (cpp.airwls.glmstep.Rd:36): Warning: missing </ul> before </div>
cpp.airwls.update.html:124:1 (cpp.airwls.update.Rd:57): Warning: missing </ul> before </div>
cpp.fit.airwls.html:168:1 (cpp.fit.airwls.Rd:84): Warning: missing </ul> before </div>
cpp.fit.block.sgd.html:198:1 (cpp.fit.block.sgd.Rd:102): Warning: missing </ul> before </div>
cpp.fit.coord.sgd.html:198:1 (cpp.fit.coord.sgd.Rd:102): Warning: missing </ul> before </div>
cpp.fit.newton.html:163:1 (cpp.fit.newton.Rd:81): Warning: missing </ul> before </div>
cpp.fit.random.block.sgd.html:198:1 (cpp.fit.random.block.sgd.Rd:102): Warning: missing </ul> before </div>
make.pos.diag.html:46:1 (make.pos.diag.Rd:10): Warning: missing </ul> before </div>
norm.procrustes.html:50:1 (norm.procrustes.Rd:12): Warning: missing </ul> before </div>
ols.fit.coef.html:54:1 (ols.fit.coef.Rd:14): Warning: missing </ul> before </div>
partition.html:54:1 (partition.Rd:12): Warning: missing </ul> before </div>
procrustes.html:58:1 (procrustes.Rd:16): Warning: missing </ul> before </div>
set.family.html:47:1 (set.family.Rd:10): Warning: missing </ul> before </div>
set.penalty.html:59:1 (set.penalty.Rd:16): Warning: missing </ul> before </div>
vglm.fit.coef.html:85:1 (vglm.fit.coef.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Youngki Shin <shiny11@mcmaster.ca>’

The Description field contains
  <arXiv:2209.14502> "Fast Inference for Quantile Regression with Tens of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  ./sgd/explicit_sgd.h:25:10: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  ./sgd/implicit_sgd.h:150:10: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  ./sgd/momentum_sgd.h:27:10: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  ./sgd/nesterov_sgd.h:27:10: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  ./validity-check/validity_check.h:21:8: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sgd.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
'library' or 'require' call not declared from: ‘microbenchmark’
Found the following HTML validation problems:
print.sgd.html:51:1 (print.sgd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Gregory Vaughan <gvaughan@bentley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Vaughan",
                      role = c("aut", "cre"),
                      email = "gvaughan@bentley.edu"),
               person(given = "Kun",
                      family = "Chen",
                      role = "ctb"),
               person(given = "Jun",
                      family = "Yan",
                      role = "ctb"))
as necessary.
checkRd: (-1) bisee.Rd:127: Lost braces
   127 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) hisee.Rd:101: Lost braces
   101 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) isee.Rd:116: Lost braces
   116 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) see.Rd:98: Lost braces
    98 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "James", "J.", "Majure", "Iowa", "State"),
                      family = "University",
                      role = "aut",
                      email = "majure@iastate.edu"),
               person(given = c("R", "port", "+", "extensions", "by", "Albrecht"),
                      family = "Gebhardt",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Maintainer: ‘Luigi Augugliaro <luigi.augugliaro@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luigi",
                    family = "Augugliaro",
                    role = c("aut", "cre"),
                    email = "luigi.augugliaro@unipa.it")
as necessary.
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "Alberto", "Cardozo"),
                      family = "Delgado",
                      role = c("aut", "cre"),
                      email = "cardozorpackages@gmail.com"),
               person(given = "G.",
                      family = "Paula",
                      role = "aut"),
               person(given = "L.",
                      family = "Vanegas",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
logLik.sglg.html:51:1 (logLik.sglg.Rd:12): Warning: missing </ul> before </div>
residuals.sglg.html:51:1 (residuals.sglg.Rd:12): Warning: missing </ul> before </div>
summary.sglg.html:51:1 (summary.sglg.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Noah Simon <nrsimon@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Noah",
                      family = "Simon",
                      role = c("aut", "cre"),
                      email = "nrsimon@uw.edu"),
               person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Balasubramanian Narasimhan <naras@stat.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Balasubramanian",
                    family = "Narasimhan",
                    role = c("aut", "cre"),
                    email = "naras@stat.stanford.edu",
                    comment = "with input from Tze Lai and Mei-Chiung Shih")
as necessary.
Maintainer: ‘Thomas Vigie <vigiethomas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Vigie",
                    role = c("aut", "cre"),
                    email = "vigiethomas@gmail.com")
as necessary.
Maintainer: ‘Irene Castro Conde <irene.castro@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Irene", "Castro"),
                      family = "Conde",
                      role = c("aut", "cre"),
                      email = "irene.castro@uvigo.es"),
               person(given = c("Jacobo", "de", "Una"),
                      family = "Alvarez",
                      role = "aut"))
as necessary.
Maintainer: ‘Benoit Liquet <b.liquet@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benoit",
                      family = "Liquet",
                      role = c("aut", "cre"),
                      email = "b.liquet@uq.edu.au"),
               person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = "aut"),
               person(given = "Camilo",
                      family = "Broc",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gPLS.Rd: cim
  gPLSda.Rd: plotIndiv, plotVar, cim, network
  sPLSda.Rd: plotIndiv, plotVar, cim, network
  sgPLSda.Rd: plotIndiv, plotVar, cim, network
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sgraph_utils.R’
Maintainer: ‘Massimiliano Pastore <massimiliano.pastore@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Massimiliano", "Pastore", "&", "Luigi"),
                      family = "Lombardi",
                      role = "aut"),
               person(given = "Massimiliano",
                      family = "Pastore",
                      role = "cre",
                      email = "massimiliano.pastore@unipd.it"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
prepare_existing.html:76:1 (prepare_existing.Rd:27): Warning: missing </ul> before </div>
vectorize.html:72:1 (vectorize.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Carter Davis <cdavis40@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carter",
                    family = "Davis",
                    role = c("aut", "cre"),
                    email = "cdavis40@chicagobooth.edu")
as necessary.
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                   ^
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                                                                                                                                        ^
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Found the following HTML validation problems:
geom_shadowtext_interactive.html:47:1 (geom_shadowtext_interactive.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Xiyue Liao <xliao@sdsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiyue",
                      family = "Liao",
                      role = c("aut", "cre"),
                      email = "xliao@sdsu.edu"),
               person(given = c("Mary", "C"),
                      family = "Meyer",
                      role = "aut"))
as necessary.
checkRd: (-1) changept.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:20-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ben Stabler <benstabler@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Stabler",
                    role = c("aut", "cre"),
                    email = "benstabler@yahoo.com")
as necessary.
checkRd: (-1) powerShape.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:32-33: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karline",
                    family = "Soetaert",
                    role = c("aut", "cre"),
                    email = "karline.soetaert@nioz.nl")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cluster.plot.Rd: vegan
  detect.outline.Rd: pixmap
  generateShapeCoefficients.Rd: wd, wavethresh
  plotWaveletShape.Rd: wavethresh
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ian Dryden   <ian.dryden@nottingham.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ian", "L."),
                      family = "Dryden",
                      role = "aut"),
               person(given = "Ian",
                      family = "Dryden",
                      role = "cre",
                      email = "ian.dryden@nottingham.ac.uk"))
as necessary.
Found the following HTML validation problems:
binner.html:50:1 (binner.Rd:12): Warning: missing </ul> before </div>
strongest_interaction.html:50:1 (strongest_interaction.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jingyi Liang <jingyiliang19@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jingyi",
                    family = "Liang",
                    role = c("aut", "cre"),
                    email = "jingyiliang19@163.com")
as necessary.
Maintainer: ‘Szymon Maksymiuk <sz.maksymiuk@gmail.com>’

The Description field contains
  Lundberg, S., et al., (2016) <arXiv:1705.07874> The SHAP method is used
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
default_doc_export.html:63:1 (default_doc_export.Rd:21): Warning: missing </ul> before </div>
exact_coalition_table.html:63:1 (exact_coalition_table.Rd:23): Warning: missing </ul> before </div>
format_convergence_info.html:54:1 (format_convergence_info.Rd:16): Warning: missing </ul> before </div>
format_info_basic.html:49:1 (format_info_basic.Rd:13): Warning: missing </ul> before </div>
format_info_extra.html:49:1 (format_info_extra.Rd:13): Warning: missing </ul> before </div>
format_shapley_info.html:60:1 (format_shapley_info.Rd:20): Warning: missing </ul> before </div>
get_cov_mat.html:54:1 (get_cov_mat.Rd:16): Warning: missing </ul> before </div>
get_feature_specs.html:72:1 (get_feature_specs.Rd:28): Warning: missing </ul> before </div>
get_mu_vec.html:48:1 (get_mu_vec.Rd:12): Warning: missing </ul> before </div>
get_predict_model.html:54:1 (get_predict_model.Rd:16): Warning: missing </ul> before </div>
sample_coalition_table.html:130:1 (sample_coalition_table.Rd:74): Warning: missing </ul> before </div>
sample_coalitions_cpp_str_paired.html:59:1 (sample_coalitions_cpp_str_paired.Rd:18): Warning: missing </ul> before </div>
test_predict_model.html:61:1 (test_predict_model.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘W.J. Braun <john.braun@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "John"),
                      family = "Braun",
                      role = "aut",
                      email = "john.braun@ubc.ca"),
               person(given = "W.J.",
                      family = "Braun",
                      role = "cre",
                      email = "john.braun@ubc.ca"))
as necessary.
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Challet",
                    role = c("aut", "cre"),
                    email = "damien.challet@gmail.com")
as necessary.

The Description field contains
  signal-to-noise ratio, for heavy-tailed data (see <arXiv:1505.01333>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Liang He <lianghe@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liang",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "lianghe@mit.edu")
as necessary.
Found the following HTML validation problems:
CheckDataRegression.html:68:1 (CheckDataRegression.Rd:24): Warning: missing </ul> before </div>
CheckInputClustering.html:107:1 (CheckInputClustering.Rd:53): Warning: missing </ul> before </div>
CheckInputGraphical.html:209:1 (CheckInputGraphical.Rd:131): Warning: missing </ul> before </div>
CheckPackageInstalled.html:46:1 (CheckPackageInstalled.Rd:10): Warning: missing </ul> before </div>
CheckParamRegression.html:151:1 (CheckParamRegression.Rd:87): Warning: missing </ul> before </div>
Maintainer: ‘Rodrigo F. de Mello <mellorf@gmail.com>’

The Description field contains
  Coefficient of Supervised Learning Algorithms" <arXiv:1911.05461>; de
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) age_corr.Rd:15: Lost braces
    15 | \item{plot}{Should the results be plotted? (/code{TRUE/FALSE})}
       |                                                  ^
checkRd: (-1) age_corr.Rd:17: Lost braces
    17 | \item{agecorrection}{Correct for jumps in age (/code{TRUE}) or
       |                                                     ^
checkRd: (-1) age_corr.Rd:18: Lost braces
    18 | only for starting time (/code{FALSE})}
       |                              ^
Maintainer: ‘Andrew Lee <andrewl@maths.usyd.edu.au>’

The Description field contains
  Peres, Lee and Keich (2020) <arXiv:2004.07429> where it is also shown
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^
Found the following HTML validation problems:
r_completions_function_call_metadata.html:52:1 (r_completions_function_call_metadata.Rd:14): Warning: missing </ul> before </div>
r_completions_general_metadata.html:47:1 (r_completions_general_metadata.Rd:11): Warning: missing </ul> before </div>
r_completions_metadata.html:46:1 (r_completions_metadata.Rd:10): Warning: missing </ul> before </div>
shinyAce_debug.html:48:1 (shinyAce_debug.Rd:12): Warning: missing </ul> before </div>
tooltip_html.html:50:1 (tooltip_html.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
closeAlert.html:52:1 (closeAlert.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Swechhya Bista <swechhyabista@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Swechhya",
                    family = "Bista",
                    role = c("aut", "cre"),
                    email = "swechhyabista@gmail.com")
as necessary.
Found the following HTML validation problems:
add_sendtime2js.html:50:1 (add_sendtime2js.Rd:12): Warning: missing </ul> before </div>
checkout.html:50:1 (checkout.Rd:12): Warning: missing </ul> before </div>
checkout_files.html:47:1 (checkout_files.Rd:10): Warning: missing </ul> before </div>
create_cypress_list.html:50:1 (create_cypress_list.Rd:12): Warning: missing </ul> before </div>
create_cypress_structure.html:54:1 (create_cypress_structure.Rd:14): Warning: missing </ul> before </div>
create_cypress_tests.html:56:1 (create_cypress_tests.Rd:16): Warning: missing </ul> before </div>
create_node_list.html:50:1 (create_node_list.Rd:12): Warning: missing </ul> before </div>
create_progress_bar.html:46:1 (create_progress_bar.Rd:10): Warning: missing </ul> before </div>
create_shinytest2_structure.html:46:1 (create_shinytest2_structure.Rd:10): Warning: missing </ul> before </div>
get_commit_date.html:46:1 (get_commit_date.Rd:10): Warning: missing </ul> before </div>
move_shinytest2_tests.html:50:1 (move_shinytest2_tests.Rd:12): Warning: missing </ul> before </div>
performance_test_cmd.html:46:1 (performance_test_cmd.Rd:10): Warning: missing </ul> before </div>
restore_env.html:53:1 (restore_env.Rd:13): Warning: missing </ul> before </div>
summarise_commit.html:46:1 (summarise_commit.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Toaster.html:194:1 (Toaster.Rd:100): Warning: missing </ul> before </div>
Toaster.html:103:1 (Toaster.Rd:51): Warning: <h5> anchor "Usage" already defined
Toaster.html:109:1 (Toaster.Rd:55): Warning: <h5> anchor "Arguments" already defined
Toaster.html:124:1 (Toaster.Rd:64): Warning: <h5> anchor "Returns" already defined
Toaster.html:141:1 (Toaster.Rd:73): Warning: <h5> anchor "Usage" already defined
Toaster.html:147:1 (Toaster.Rd:77): Warning: <h5> anchor "Returns" already defined
Toaster.html:164:1 (Toaster.Rd:86): Warning: <h5> anchor "Usage" already defined
Toaster.html:170:1 (Toaster.Rd:90): Warning: <h5> anchor "Arguments" already defined
Toaster.html:183:1 (Toaster.Rd:97): Warning: <h5> anchor "Returns" already defined
Found the following HTML validation problems:
patients.html:61:1 (patients.Rd:18): Warning: missing </ul> before </div>
shinybody_organs.html:73:1 (shinybody_organs.Rd:28): Warning: missing </ul> before </div>
tumors.html:61:1 (tumors.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Eric Bailey <ebailey@idem.in.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eric",
                    family = "Bailey",
                    role = c("aut", "cre"),
                    email = "ebailey@idem.in.gov")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Buttons.Rd: actionButton, checkboxInput
  Collapses.Rd: tabsetPanel, shinyServer
  Modals.Rd: tabPanel
  Tooltips_and_Popovers.Rd: renderUI
  bsButton.Rd: icon
  bsExample.Rd: runApp
  popify.Rd: renderUI
  tipify.Rd: renderUI
  updateButton.Rd: icon, submitButton
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
chakraNumberInput.html:86:1 (chakraNumberInput.Rd:36): Warning: missing </ul> before </div>
numberInputOptions.html:82:1 (numberInputOptions.Rd:32): Warning: missing </ul> before </div>
thumbOptions.html:86:1 (thumbOptions.Rd:35): Warning: missing </ul> before </div>
updateChakraNumberInput.html:54:1 (updateChakraNumberInput.Rd:14): Warning: missing </ul> before </div>
updateChakraSliderInput.html:54:1 (updateChakraSliderInput.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
CSVConnection.html:191:1 (CSVConnection.Rd:103): Warning: missing </ul> before </div>
CSVConnection.html:121:1 (CSVConnection.Rd:62): Warning: <h5> anchor "Usage" already defined
CSVConnection.html:135:1 (CSVConnection.Rd:71): Warning: <h5> anchor "Usage" already defined
CSVConnection.html:141:1 (CSVConnection.Rd:75): Warning: <h5> anchor "Arguments" already defined
CSVConnection.html:168:1 (CSVConnection.Rd:92): Warning: <h5> anchor "Usage" already defined
CSVConnection.html:174:1 (CSVConnection.Rd:96): Warning: <h5> anchor "Arguments" already defined
DBConnection.html:191:1 (DBConnection.Rd:104): Warning: missing </ul> before </div>
DBConnection.html:121:1 (DBConnection.Rd:63): Warning: <h5> anchor "Usage" already defined
DBConnection.html:135:1 (DBConnection.Rd:72): Warning: <h5> anchor "Usage" already defined
DBConnection.html:141:1 (DBConnection.Rd:76): Warning: <h5> anchor "Arguments" already defined
DBConnection.html:168:1 (DBConnection.Rd:93): Warning: <h5> anchor "Usage" already defined
DBConnection.html:174:1 (DBConnection.Rd:97): Warning: <h5> anchor "Arguments" already defined
RDSConnection.html:187:1 (RDSConnection.Rd:99): Warning: missing </ul> before </div>
RDSConnection.html:117:1 (RDSConnection.Rd:58): Warning: <h5> anchor "Usage" already defined
RDSConnection.html:131:1 (RDSConnection.Rd:67): Warning: <h5> anchor "Usage" already defined
RDSConnection.html:137:1 (RDSConnection.Rd:71): Warning: <h5> anchor "Arguments" already defined
RDSConnection.html:164:1 (RDSConnection.Rd:88): Warning: <h5> anchor "Usage" already defined
RDSConnection.html:170:1 (RDSConnection.Rd:92): Warning: <h5> anchor "Arguments" already defined
chat_ui.html:58:1 (chat_ui.Rd:16): Warning: missing </ul> before </div>
updateChatTextInput.html:54:1 (updateChatTextInput.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘filter_discrete.R’ ‘filter_query.R’ ‘renders.R’
Maintainer: ‘Emi Tanaka <emi.tanaka@sydney.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emi",
                      family = "Tanaka",
                      role = c("aut", "cre"),
                      email = "emi.tanaka@sydney.edu.au"),
               person(family = "Niichan",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
shinyCyJS.html:78:1 (shinyCyJS.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
boxLabel.html:73:1 (boxLabel.Rd:22): Warning: missing </ul> before </div>
dashboardUserItem.html:50:1 (dashboardUserItem.Rd:12): Warning: missing </ul> before </div>
messageItem.html:76:1 (messageItem.Rd:30): Warning: missing </ul> before </div>
notificationItem.html:69:1 (notificationItem.Rd:25): Warning: missing </ul> before </div>
tagAssert.html:61:1 (tagAssert.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
renderDropdownMenu.html:61:1 (renderDropdownMenu.Rd:21): Warning: missing </ul> before </div>
tagAssert.html:61:1 (tagAssert.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fab_button.html:73:1 (fab_button.Rd:27): Warning: missing </ul> before </div>
module-chpass.html:91:1 (module-chpass.Rd:43): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘destroyModule.R’ ‘makeModule.R’
Maintainer: ‘Alex Pickering <alexvpickering@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Pickering",
                    role = c("aut", "cre"),
                    email = "alexvpickering@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  downloadablePlot.Rd: renderPlot
  downloadablePlotUI.Rd: plotOutput
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
blurContainer.html:46:1 (blurContainer.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
EmptyStateManager.html:123:1 (EmptyStateManager.Rd:106): Warning: <h5> anchor "Usage" already defined
EmptyStateManager.html:129:1 (EmptyStateManager.Rd:110): Warning: <h5> anchor "Returns" already defined
EmptyStateManager.html:146:1 (EmptyStateManager.Rd:119): Warning: <h5> anchor "Usage" already defined
EmptyStateManager.html:152:1 (EmptyStateManager.Rd:123): Warning: <h5> anchor "Returns" already defined
EmptyStateManager.html:169:1 (EmptyStateManager.Rd:132): Warning: <h5> anchor "Usage" already defined
EmptyStateManager.html:175:1 (EmptyStateManager.Rd:136): Warning: <h5> anchor "Returns" already defined
EmptyStateManager.html:192:1 (EmptyStateManager.Rd:145): Warning: <h5> anchor "Usage" already defined
EmptyStateManager.html:198:1 (EmptyStateManager.Rd:149): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
hideFeedback.html:50:1 (hideFeedback.Rd:12): Warning: missing </ul> before </div>
loadingButton.html:84:1 (loadingButton.Rd:34): Warning: missing </ul> before </div>
resetLoadingButton.html:50:1 (resetLoadingButton.Rd:12): Warning: missing </ul> before </div>
valueBoxModuleUI.html:84:1 (valueBoxModuleUI.Rd:34): Warning: missing </ul> before </div>
checkRd: (-1) js_calls.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pickCheckboxNamesAndLabels.Rd:14: Lost braces
    14 | \item{choices}{link{pickCheckboxInput} choices list.}
       |                    ^
Found the following HTML validation problems:
runExample.html:46:1 (runExample.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘continue_sequence.R’ ‘get_exchange_rates.R’
Maintainer: ‘Huseyin Yildiz <huseyinyildiz35@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Huseyin",
                    family = "Yildiz",
                    role = c("aut", "cre"),
                    email = "huseyinyildiz35@gmail.com")
as necessary.
Found the following HTML validation problems:
jqui_position.html:120:1 (jqui_position.Rd:63): Warning: missing </ul> before </div>
checkRd: (-1) shinyjs-defunct.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shinyjs-defunct.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shinyjs-defunct.Rd:20: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Joe Wandy <joe.wandy@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joe",
                    family = "Wandy",
                    role = c("aut", "cre"),
                    email = "joe.wandy@glasgow.ac.uk")
as necessary.
Found the following HTML validation problems:
shinylight.passToOther.html:47:1 (shinylight.passToOther.Rd:11): Warning: missing </ul> before </div>
shinylight.setElementJson.html:47:1 (shinylight.setElementJson.Rd:11): Warning: missing </ul> before </div>
shinylight.setElementPlot.html:49:1 (shinylight.setElementPlot.Rd:11): Warning: missing </ul> before </div>
shinylight.setElementText.html:46:1 (shinylight.setElementText.Rd:10): Warning: missing </ul> before </div>
shinylight.setGridResult.html:45:1 (shinylight.setGridResult.Rd:9): Warning: missing </ul> before </div>
shinylight.setGridResultWithNamedRows.html:47:1 (shinylight.setGridResultWithNamedRows.Rd:9): Warning: missing </ul> before </div>
toolkit.all.html:48:1 (toolkit.all.Rd:11): Warning: missing </ul> before </div>
toolkit.any.html:48:1 (toolkit.any.Rd:11): Warning: missing </ul> before </div>
toolkit.forEach.html:45:1 (toolkit.forEach.Rd:10): Warning: missing </ul> before </div>
toolkit.groupTitle.html:47:1 (toolkit.groupTitle.Rd:12): Warning: missing </ul> before </div>
toolkit.setAsBody.html:42:1 (toolkit.setAsBody.Rd:8): Warning: missing </ul> before </div>
Found the following HTML validation problems:
quarto_ext.html:237:1 (quarto_ext.Rd:147): Warning: missing </ul> before </div>
checkRd: (-1) store_googledrive.Rd:19: Lost braces; missing escapes or markup?
    19 | See the {gargle} package to manage authentication, and especially
       |         ^
checkRd: (-1) store_googledrive.Rd:20: Lost braces; missing escapes or markup?
    20 | \href{https://gargle.r-lib.org/articles/articles/managing-tokens-securely.html}{this vignette from {gargle} package} to manage the process.
       |                                                                                                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lottie_addEventListener.Rd’ ‘lottie_button.Rd’
    ‘lottie_removeEventListener.Rd’
checkRd: (-1) custom-labels.Rd:7: Lost braces; missing escapes or markup?
     7 | \title{Modify {shinymanager} labels to use custom text}
       |               ^
checkRd: (-1) use_language.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Use {shinymanager} labels}
       |            ^
Maintainer: ‘Andreas Neudecker <andreas.neudecker@inwt-statistics.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Neudecker",
                    role = c("aut", "cre"),
                    email = "andreas.neudecker@inwt-statistics.de")
as necessary.
Maintainer: ‘Jean Bertin <jean.bertin@mines-paris.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean",
                    family = "Bertin",
                    role = c("aut", "cre"),
                    email = "jean.bertin@mines-paris.org")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fabs.Rd’
Found the following HTML validation problems:
run_app.html:87:1 (run_app.Rd:41): Warning: missing </ul> before </div>
Maintainer: ‘Reneé González-Guzmán <rguzman@geociencias.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
convert_selection.html:48:1 (convert_selection.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alex Pickering <alexvpickering@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Pickering",
                    role = c("aut", "cre"),
                    email = "alexvpickering@gmail.com")
as necessary.
Found the following HTML validation problems:
textAreaInputWithButtons.html:87:1 (textAreaInputWithButtons.Rd:37): Warning: missing </ul> before </div>
textInputWithButtons.html:98:1 (textInputWithButtons.Rd:44): Warning: missing </ul> before </div>
textInputWithValidation.html:70:1 (textInputWithValidation.Rd:26): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) shiny_pivot_table.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:64: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jari Haukka <jari.haukka@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jari",
                    family = "Haukka",
                    role = c("aut", "cre"),
                    email = "jari.haukka@helsinki.fi")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
getTemplate.html:46:1 (getTemplate.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
r_to_js_opt_type.html:46:1 (r_to_js_opt_type.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Maintainer: ‘Jeff Allen <jeff@trestletech.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trestle",
                      family = "Technology",
                      role = "aut"),
               person(family = "LLC.",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Allen",
                      role = "cre",
                      email = "jeff@trestletech.com"))
as necessary.
Found the following HTML validation problems:
attach_attribs.html:52:1 (attach_attribs.Rd:12): Warning: missing </ul> before </div>
change_page.html:60:1 (change_page.Rd:16): Warning: missing </ul> before </div>
disable_bootstrap_on_bookmark.html:47:1 (disable_bootstrap_on_bookmark.Rd:10): Warning: missing </ul> before </div>
dot-onAttach.html:50:1 (dot-onAttach.Rd:12): Warning: missing </ul> before </div>
is_page.html:57:1 (is_page.Rd:15): Warning: missing </ul> before </div>
log_msg.html:52:1 (log_msg.Rd:15): Warning: missing </ul> before </div>
router_server_internal.html:46:1 (router_server_internal.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
reset_data.html:46:1 (reset_data.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Progress-R6.html:137:1 (Progress-R6.Rd:107): Warning: <h5> anchor "Usage" already defined
Progress-R6.html:143:1 (Progress-R6.Rd:111): Warning: <h5> anchor "Arguments" already defined
Progress-R6.html:175:1 (Progress-R6.Rd:133): Warning: <h5> anchor "Usage" already defined
Progress-R6.html:181:1 (Progress-R6.Rd:137): Warning: <h5> anchor "Arguments" already defined
Progress-R6.html:210:1 (Progress-R6.Rd:156): Warning: <h5> anchor "Usage" already defined
Progress-R6.html:226:1 (Progress-R6.Rd:166): Warning: <h5> anchor "Usage" already defined
Progress-R6.html:242:1 (Progress-R6.Rd:176): Warning: <h5> anchor "Usage" already defined
Progress-R6.html:259:1 (Progress-R6.Rd:187): Warning: <h5> anchor "Usage" already defined
Progress-R6.html:275:1 (Progress-R6.Rd:197): Warning: <h5> anchor "Usage" already defined
Progress-R6.html:281:1 (Progress-R6.Rd:201): Warning: <h5> anchor "Arguments" already defined
attach_rule.html:58:1 (attach_rule.Rd:16): Warning: missing </ul> before </div>
define_selection_type.html:50:1 (define_selection_type.Rd:12): Warning: missing </ul> before </div>
dot-onLoad.html:50:1 (dot-onLoad.Rd:12): Warning: missing </ul> before </div>
generate_random_id.html:52:1 (generate_random_id.Rd:13): Warning: missing </ul> before </div>
list_element.html:54:1 (list_element.Rd:14): Warning: missing </ul> before </div>
set_tab_id.html:47:1 (set_tab_id.Rd:11): Warning: missing </ul> before </div>
update_progress.html:64:1 (update_progress.Rd:22): Warning: missing </ul> before </div>
warn_unsupported_args.html:46:1 (warn_unsupported_args.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
init.html:55:1 (init.Rd:15): Warning: missing </ul> before </div>
shinyservicebot-shiny.html:68:1 (shinyservicebot-shiny.Rd:25): Warning: missing </ul> before </div>
shinyservicebot_html.html:58:1 (shinyservicebot_html.Rd:16): Warning: missing </ul> before </div>
Found the following files/directories:
  ‘.shiny_run’ ‘shinyShortcut.desktop’
Maintainer: ‘Sinead E. Morris <sinead.morris@columbia.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
rename_model.html:47:1 (rename_model.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
StorageClass.html:164:1 (StorageClass.Rd:218): Warning: <h5> anchor "Usage" already defined
StorageClass.html:170:1 (StorageClass.Rd:222): Warning: <h5> anchor "Returns" already defined
StorageClass.html:179:1 (StorageClass.Rd:227): Warning: <h5> anchor "Examples" already defined
StorageClass.html:209:1 (StorageClass.Rd:252): Warning: <h5> anchor "Usage" already defined
StorageClass.html:215:1 (StorageClass.Rd:256): Warning: <h5> anchor "Arguments" already defined
StorageClass.html:231:1 (StorageClass.Rd:266): Warning: <h5> anchor "Examples" already defined
StorageClass.html:264:1 (StorageClass.Rd:294): Warning: <h5> anchor "Usage" already defined
StorageClass.html:273:1 (StorageClass.Rd:301): Warning: <h5> anchor "Arguments" already defined
StorageClass.html:290:1 (StorageClass.Rd:312): Warning: <h5> anchor "Examples" already defined
StorageClass.html:320:1 (StorageClass.Rd:337): Warning: <h5> anchor "Usage" already defined
StorageClass.html:326:1 (StorageClass.Rd:341): Warning: <h5> anchor "Arguments" already defined
StorageClass.html:340:1 (StorageClass.Rd:349): Warning: <h5> anchor "Examples" already defined
StorageClass.html:378:1 (StorageClass.Rd:382): Warning: <h5> anchor "Usage" already defined
StorageClass.html:384:1 (StorageClass.Rd:386): Warning: <h5> anchor "Examples" already defined
StorageClass.html:415:1 (StorageClass.Rd:412): Warning: <h5> anchor "Usage" already defined
StorageClass.html:421:1 (StorageClass.Rd:416): Warning: <h5> anchor "Arguments" already defined
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’ ‘function.R’
Found the following HTML validation problems:
app_server.html:54:1 (app_server.Rd:14): Warning: missing </ul> before </div>
app_ui.html:46:1 (app_ui.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Amit Kohli <amit@amitkohli.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Amit",
                    family = "Kohli",
                    role = c("aut", "cre"),
                    email = "amit@amitkohli.com")
as necessary.
checkRd: (-1) run_shinytitle_example.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) run_shinytitle_example.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Papa",
                      role = "aut"),
               person(given = "Tim",
                      family = "Ferrell",
                      role = "aut"),
               person(given = "Hans",
                      family = "Fjällemark",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"))
as necessary.
Found the following HTML validation problems:
toastr_clear_all.html:46:1 (toastr_clear_all.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_checked.html:56:1 (get_checked.Rd:17): Warning: missing </ul> before </div>
get_selected.html:56:1 (get_selected.Rd:17): Warning: missing </ul> before </div>
updateTree.html:55:1 (updateTree.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
InputValidator.html:437:1 (InputValidator.Rd:273): Warning: missing </ul> before </div>
InputValidator.html:150:1 (InputValidator.Rd:80): Warning: <h5> anchor "Usage" already defined
InputValidator.html:156:1 (InputValidator.Rd:84): Warning: <h5> anchor "Arguments" already defined
InputValidator.html:183:1 (InputValidator.Rd:101): Warning: <h5> anchor "Usage" already defined
InputValidator.html:189:1 (InputValidator.Rd:105): Warning: <h5> anchor "Arguments" already defined
InputValidator.html:233:1 (InputValidator.Rd:135): Warning: <h5> anchor "Usage" already defined
InputValidator.html:239:1 (InputValidator.Rd:139): Warning: <h5> anchor "Arguments" already defined
InputValidator.html:269:1 (InputValidator.Rd:159): Warning: <h5> anchor "Usage" already defined
InputValidator.html:280:1 (InputValidator.Rd:168): Warning: <h5> anchor "Arguments" already defined
InputValidator.html:324:1 (InputValidator.Rd:202): Warning: <h5> anchor "Usage" already defined
InputValidator.html:343:1 (InputValidator.Rd:215): Warning: <h5> anchor "Usage" already defined
InputValidator.html:360:1 (InputValidator.Rd:226): Warning: <h5> anchor "Usage" already defined
InputValidator.html:377:1 (InputValidator.Rd:237): Warning: <h5> anchor "Usage" already defined
InputValidator.html:398:1 (InputValidator.Rd:252): Warning: <h5> anchor "Usage" already defined
InputValidator.html:414:1 (InputValidator.Rd:262): Warning: <h5> anchor "Usage" already defined
InputValidator.html:420:1 (InputValidator.Rd:266): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
create_ksrates_cmd.html:54:1 (create_ksrates_cmd.Rd:14): Warning: missing </ul> before </div>
create_ksrates_cmd_from_table.html:58:1 (create_ksrates_cmd_from_table.Rd:16): Warning: missing </ul> before </div>
create_ksrates_configure_file_based_on_table.html:73:1 (create_ksrates_configure_file_based_on_table.Rd:27): Warning: missing </ul> before </div>
create_ksrates_configure_file_v2.html:54:1 (create_ksrates_configure_file_v2.Rd:14): Warning: missing </ul> before </div>
create_ksrates_expert_parameter_file.html:46:1 (create_ksrates_expert_parameter_file.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘slimSelectInput.Rd’
Found the following HTML validation problems:
closeSweetAlert.html:47:1 (closeSweetAlert.Rd:11): Warning: missing </ul> before </div>
deprecated.html:68:1 (deprecated.Rd:36): Warning: missing </ul> before </div>
tooltipOptions.html:54:1 (tooltipOptions.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘ORPHANED’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Shipunov",
                      role = c("aut", "cre")),
               person(given = "Paul",
                      family = "Murrell",
                      role = "ctb"),
               person(given = "Marcello",
                      family = "D'Orazio",
                      role = "ctb"),
               person(given = "Stephen",
                      family = "Turner",
                      role = "ctb"),
               person(given = "Eugeny",
                      family = "Altshuler",
                      role = "ctb"),
               person(given = "Roland",
                      family = "Rau",
                      role = "ctb"),
               person(given = c("Marcus", "W"),
                      family = "Beck",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Gibb",
                      role = "ctb"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "ctb"),
               person(given = "Emmanuel",
                      family = "Paradis",
                      role = "ctb"),
               person(given = "Roger",
                      family = "Koenker",
                      role = "ctb"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "ctb"),
               person(family = "ORPHANED",
                      role = "cre"))
as necessary.
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
Maintainer: ‘José Carlos Del Valle <jcval94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("José", "Carlos", "Del"),
                    family = "Valle",
                    role = c("aut", "cre"),
                    email = "jcval94@gmail.com")
as necessary.
Found the following HTML validation problems:
plot-ACO-ANY-method.html:56:1 (plot-ACO-ANY-method.Rd:15): Warning: missing </ul> before </div>
plot-SA-ANY-method.html:51:1 (plot-SA-ANY-method.Rd:12): Warning: missing </ul> before </div>
plot-TS-ANY-method.html:51:1 (plot-TS-ANY-method.Rd:12): Warning: missing </ul> before </div>
show-ACO-method.html:47:1 (show-ACO-method.Rd:10): Warning: missing </ul> before </div>
show-SA-method.html:47:1 (show-SA-method.Rd:10): Warning: missing </ul> before </div>
show-TS-method.html:47:1 (show-TS-method.Rd:10): Warning: missing </ul> before </div>
summary-ACO-method.html:47:1 (summary-ACO-method.Rd:10): Warning: missing </ul> before </div>
summary-SA-method.html:47:1 (summary-SA-method.Rd:10): Warning: missing </ul> before </div>
summary-TS-method.html:47:1 (summary-TS-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "fonts.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "software.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Binbin Lu <binbinlu@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Binbin",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "binbinlu@whu.edu.cn")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:54:1 (inst/NEWS.Rd:19): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:90:1 (inst/NEWS.Rd:36): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:108:1 (inst/NEWS.Rd:46): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:139:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:163:1 (inst/NEWS.Rd:71): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:174:1 (inst/NEWS.Rd:76): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:189:1 (inst/NEWS.Rd:85): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:200:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:221:1 (inst/NEWS.Rd:101): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:236:1 (inst/NEWS.Rd:110): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:251:1 (inst/NEWS.Rd:119): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:269:1 (inst/NEWS.Rd:129): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:281:1 (inst/NEWS.Rd:135): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:299:1 (inst/NEWS.Rd:145): Warning: <h4> anchor "MINOR-CHANGES" already defined
Maintainer: ‘Carlos Mercado <carlos.mercado@flipsidecrypto.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Mercado",
                    role = c("aut", "cre"),
                    email = "carlos.mercado@flipsidecrypto.com")
as necessary.
Maintainer: ‘Kyle Caudle <kyle.caudle@sdsmt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyle",
                    family = "Caudle",
                    role = c("aut", "cre"),
                    email = "kyle.caudle@sdsmt.edu")
as necessary.
Maintainer: ‘Yuval Benjamini <yuvalbenj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuval",
                    family = "Benjamini",
                    role = c("aut", "cre"),
                    email = "yuvalbenj@gmail.com")
as necessary.
Maintainer: ‘Siddhanta Phuyal <siddhantaphuyal7159@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Siddhanta", "Phuyal", "Jyotirmoy", "Sarkar", "<jsarkar@iupui.edu>", "Mamunur", "Rashid"),
                      family = "<mrashid@depauw.edu>",
                      role = "aut",
                      email = "mrashid@depauw.edu"),
               person(given = "Siddhanta",
                      family = "Phuyal",
                      role = "cre",
                      email = "siddhantaphuyal7159@gmail.com"))
as necessary.
checkRd: (-1) shutterplot.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.'
       |                       ^
Found the following HTML validation problems:
sm_list_available.html:47:1 (sm_list_available.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Marie-Karelle Riviere <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marie-Karelle",
                    family = "Riviere",
                    role = c("aut", "cre"),
                    email = "eldamjh@gmail.com")
as necessary.
Running ‘testthat.R’ [10s/37s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(sidra)
  > 
  > test_check("sidra")
  A consulta excederá o limite de 100.000 pontos de dados permitido pela API.
  Vamos contornar este problema fazendo várias solicitações menores.
  Haverá maior demora
  A consulta excederá o limite de 100.000 pontos de dados permitido pela API.
  Vamos contornar este problema fazendo várias solicitações menores.
  Haverá maior demora
  [ FAIL 1 | WARN 9 | SKIP 0 | PASS 2 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-sidra.R:11:5'): sidra(1705) returns a data frame ─────────────
  `output_table` is not NULL
  
  `actual` is an S3 object of class <data.table/data.frame>, a list
  `expected` is NULL
   OR API was not reacheable,
                  function should have returned NULL
  
  [ FAIL 1 | WARN 9 | SKIP 0 | PASS 2 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Noé Palmerin  <sie@banxico.org.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("DGIE", "-", "Banco"),
                      family = "de México",
                      role = "aut"),
               person(given = "Noé",
                      family = "Palmerin",
                      role = "cre",
                      email = "sie@banxico.org.mx"))
as necessary.
Maintainer: ‘Ruiyan Luo <rluo@gsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Ruiyan",
                      role = c("aut", "cre"),
                      email = "rluo@gsu.edu"),
               person(given = "Xin",
                      family = "Qi",
                      role = "aut"))
as necessary.
Maintainer: ‘Tianyu Zhang <tianyuz3@andrew.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianyu",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "tianyuz3@andrew.cmu.edu")
as necessary.

The Description field contains
  methods can be found in: <arXiv:2206.02994>
  <arXiv:2104.00846><arXiv:2310.12140>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Sieve-package.Rd’:
    \keyword{sieve estimation; estimation using orthog [TRUNCATED]
Maintainer: ‘Petr Matousu <pmatousu@more-praha.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Matousu",
                    role = c("aut", "cre"),
                    email = "pmatousu@more-praha.cz")
as necessary.
checkRd: (-1) drr.Rd:36: Lost braces; missing escapes or markup?
    36 |   \code{drr} {is Rosin - Rammler probability density function}\cr
       |              ^
checkRd: (-1) drr.Rd:37: Lost braces; missing escapes or markup?
    37 |   \code{urr} {is Rosin - Rammler cumulative distribution function (CDF) representing undersize mass fraction}\cr
       |              ^
checkRd: (-1) drr.Rd:38: Lost braces
    38 |   \code{orr} {is Rosin - Rammler complementary CDF representing oversize mass fraction ie. relative remainder on the sieve with the mesh size \code{x}}\cr
       |              ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Hanwen Huang <hanwenh.unc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanwen",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "hanwenh.unc@gmail.com"),
               person(given = c("Yufeng", "Liu", "&", "J.", "S."),
                      family = "Marron",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
sg_custom_shapes.html:46:1 (sg_custom_shapes.Rd:10): Warning: missing </ul> before </div>
sg_zoom_p.html:58:1 (sg_zoom_p.Rd:16): Warning: missing </ul> before </div>
sigmajs-shiny.html:74:1 (sigmajs-shiny.Rd:30): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘show_group_enrichment.R’
Found the following HTML validation problems:
Gompertz.html:58:1 (Gompertz.Rd:16): Warning: missing </ul> before </div>
SoftMax.html:50:1 (SoftMax.Rd:12): Warning: missing </ul> before </div>
SoftPlus.html:46:1 (SoftPlus.Rd:11): Warning: missing </ul> before </div>
inverse_Gompertz.html:46:1 (inverse_Gompertz.Rd:10): Warning: missing </ul> before </div>
leakyrelu.html:46:1 (leakyrelu.Rd:10): Warning: missing </ul> before </div>
logistic.html:54:1 (logistic.Rd:14): Warning: missing </ul> before </div>
logit.html:46:1 (logit.Rd:10): Warning: missing </ul> before </div>
relu.html:46:1 (relu.Rd:10): Warning: missing </ul> before </div>
relu_output_to_derivative.html:46:1 (relu_output_to_derivative.Rd:10): Warning: missing </ul> before </div>
sigmoid_output_to_derivative.html:46:1 (sigmoid_output_to_derivative.Rd:10): Warning: missing </ul> before </div>
softplus_output_to_derivative.html:46:1 (softplus_output_to_derivative.Rd:10): Warning: missing </ul> before </div>
tanh_output_to_derivative.html:46:1 (tanh_output_to_derivative.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Cells-set.html:54:1 (Cells-set.Rd:14): Warning: missing </ul> before </div>
CreateChromatinAssay.html:171:1 (CreateChromatinAssay.Rd:89): Warning: missing </ul> before </div>
GetFragmentData.html:50:1 (GetFragmentData.Rd:12): Warning: missing </ul> before </div>
GetGRangesFromEnsDb.html:65:1 (GetGRangesFromEnsDb.Rd:21): Warning: missing </ul> before </div>
GetTSSPositions.html:53:1 (GetTSSPositions.Rd:13): Warning: missing </ul> before </div>
PlotFootprint.html:109:1 (PlotFootprint.Rd:51): Warning: missing </ul> before </div>
SplitFragments.html:96:1 (SplitFragments.Rd:41): Warning: missing </ul> before </div>
UpdatePath.html:57:1 (UpdatePath.Rd:14): Warning: missing </ul> before </div>
ValidateCells.html:79:1 (ValidateCells.Rd:33): Warning: missing </ul> before </div>
ValidateFragments.html:56:1 (ValidateFragments.Rd:14): Warning: missing </ul> before </div>
ValidateHash.html:50:1 (ValidateHash.Rd:12): Warning: missing </ul> before </div>
VariantPlot.html:66:1 (VariantPlot.Rd:23): Warning: missing </ul> before </div>
as.ChromatinAssay.html:117:1 (as.ChromatinAssay.Rd:52): Warning: missing </ul> before </div>
Maintainer: ‘Mathew Chamberlain <chamberlainphd@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) add_k_mer_state.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  survivalForest.Rd: forestplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Furkan Gursoy <furkan.gursoy@boun.edu.tr>’

The Description field contains
  Networks. <arXiv:2012.05216>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Louis-Marvin Sander <louis.sander@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Louis-Marvin",
                      family = "Sander",
                      role = c("aut", "cre"),
                      email = "louis.sander@web.de"),
               person(given = c("master", "of", "ecology", "student", "from"),
                      family = "Bayreuth",
                      role = "aut"),
               person(family = "DE",
                      role = "aut"))
as necessary.
Maintainer: ‘Adriano Zanin Zambom <adriano.zambom@csun.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jongwook",
                      family = "Kim",
                      role = "aut"),
               person(given = c("Adriano", "Zanin"),
                      family = "Zambom",
                      role = c("aut", "cre"),
                      email = "adriano.zambom@csun.edu"))
as necessary.
Maintainer: ‘Alexandra Johnson <alexandra@sigopt.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandra",
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "alexandra@sigopt.com")
as necessary.
Maintainer: ‘Witold Wolski <wew@fgcz.ethz.ch>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) sig.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
ci.html:72:1 (ci.Rd:28): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘p_sie.R’ ‘prp.R’ ‘siie.R’
Maintainer: ‘Martin Olivier <olivier.martin@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carpentier",
                      family = "F.",
                      role = "aut"),
               person(given = "Martin",
                      family = "O.",
                      role = "aut"),
               person(given = "Martin",
                      family = "Olivier",
                      role = "cre",
                      email = "olivier.martin@inrae.fr"))
as necessary.
checkRd: (-1) siland.Rd:64: Lost braces; missing escapes or markup?
    64 | \item x_{l,i}, local variable l,
       |         ^
checkRd: (-1) siland.Rd:70: Lost braces; missing escapes or markup?
    70 | \item d_{r,i} the distance between the center of pixel r and the observation at site i.
       |         ^
Found the following HTML validation problems:
plot.siland.html:57:1 (plot.siland.Rd:23): Warning: missing </ul> before </div>
print.siland.html:53:1 (print.siland.Rd:21): Warning: missing </ul> before </div>
residuals.siland.html:53:1 (residuals.siland.Rd:20): Warning: missing </ul> before </div>
summary.siland.html:58:1 (summary.siland.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Rong Zhang <roz16@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "roz16@pitt.edu"),
               person(given = "Zhao",
                      family = "Ren",
                      role = "aut"),
               person(given = "Wei",
                      family = "Chen",
                      role = "aut"))
as necessary.
checkRd: (-1) inlandwaters.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Xianyang Zhang <zhangxiany@stat.tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xianyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangxiany@stat.tamu.edu"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"),
               person(given = "Jincheng",
                      family = "Bai",
                      role = "aut"))
as necessary.
Maintainer: ‘Justin Leach <jleach@uab.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/jmleach-bst/sim2Dpredictr
which should likely be
  https://github.com/jmleach-bst/sim2Dpredictr/issues
instead.
checkRd: (-1) sim_Y_Binary_X.Rd:51: Lost braces
    51 |     \item \code{dist = "binomial"} is drawn from eqn{Bin(XB, XB(1-XB))}
       |                                                     ^
Found the following HTML validation problems:
prune_to_visit_med75_inframe.html:51:1 (prune_to_visit_med75_inframe.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
estThetaRow.html:64:1 (estThetaRow.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Define_sVar.html:223:1 (Define_sVar.Rd:115): Warning: missing </ul> before </div>
Define_sVar.html:114:1 (Define_sVar.Rd:49): Warning: <h5> anchor "Usage" already defined
Define_sVar.html:128:1 (Define_sVar.Rd:58): Warning: <h5> anchor "Usage" already defined
Define_sVar.html:142:1 (Define_sVar.Rd:67): Warning: <h5> anchor "Usage" already defined
Define_sVar.html:156:1 (Define_sVar.Rd:76): Warning: <h5> anchor "Usage" already defined
Define_sVar.html:170:1 (Define_sVar.Rd:85): Warning: <h5> anchor "Usage" already defined
Define_sVar.html:184:1 (Define_sVar.Rd:94): Warning: <h5> anchor "Usage" already defined
Define_sVar.html:200:1 (Define_sVar.Rd:104): Warning: <h5> anchor "Usage" already defined
NetIndClass.html:195:1 (NetIndClass.Rd:107): Warning: missing </ul> before </div>
NetIndClass.html:76:1 (NetIndClass.Rd:41): Warning: <h3> anchor "Methods" already defined
NetIndClass.html:124:1 (NetIndClass.Rd:64): Warning: <h5> anchor "Usage" already defined
NetIndClass.html:138:1 (NetIndClass.Rd:73): Warning: <h5> anchor "Usage" already defined
NetIndClass.html:156:1 (NetIndClass.Rd:86): Warning: <h5> anchor "Usage" already defined
NetIndClass.html:172:1 (NetIndClass.Rd:96): Warning: <h5> anchor "Usage" already defined
plotSurvEst.html:79:1 (plotSurvEst.Rd:31): Warning: missing </ul> before </div>
print.DAG.html:51:1 (print.DAG.Rd:12): Warning: missing </ul> before </div>
print.DAG.action.html:51:1 (print.DAG.action.Rd:12): Warning: missing </ul> before </div>
print.DAG.node.html:51:1 (print.DAG.node.Rd:12): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:55:1 (inst/NEWS.Rd:18): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:110:1 (inst/NEWS.Rd:43): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:131:1 (inst/NEWS.Rd:54): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:149:1 (inst/NEWS.Rd:64): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:182:1 (inst/NEWS.Rd:79): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:200:1 (inst/NEWS.Rd:89): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:211:1 (inst/NEWS.Rd:94): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:225:1 (inst/NEWS.Rd:100): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:249:1 (inst/NEWS.Rd:111): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:263:1 (inst/NEWS.Rd:117): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:287:1 (inst/NEWS.Rd:129): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:308:1 (inst/NEWS.Rd:140): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:335:1 (inst/NEWS.Rd:153): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:346:1 (inst/NEWS.Rd:158): Warning: <h4> anchor "MINOR-CHANGES" already defined
NEWS.html:364:1 (inst/NEWS.Rd:168): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:375:1 (inst/NEWS.Rd:173): Warning: <h4> anchor "MAJOR-CHANGES" already defined
NEWS.html:385:1 (inst/NEWS.Rd:177): Warning: <h4> anchor "MINOR-CHANGES" already defined
Maintainer: ‘Allison Cynthia Fialkowski <allijazz@uab.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Allison", "Cynthia"),
                    family = "Fialkowski",
                    role = c("aut", "cre"),
                    email = "allijazz@uab.edu")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: corr_bounds.html
    From: inst/doc/method_comp.html
  URI: variable_types
    From: inst/doc/workflow.html
  URI: errorloop.html
    From: inst/doc/workflow.html

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘intercorr_cont.Rd’:
    \keyword{Fleishman,}
    \keyword{continuous,}
    \keyword{correlation,}
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
getbounds-methods.html:46:1 (getbounds-methods.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
apply_array.html:55:1 (apply_array.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
notify.html:55:1 (notify.Rd:14): Warning: missing </ul> before </div>
File ‘Sim.DiffProc/libs/Sim.DiffProc.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.
Found the following HTML validation problems:
dot-validate_freqs.html:50:1 (dot-validate_freqs.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) create_modelDF.Rd:25-38: Lost braces
    25 | convert_xlsx_to_csv<-function(xlsx_file){
       |                                         ^
checkRd: (-1) create_modelDF.Rd:33-36: Lost braces
    33 |   for (i in Sheetnames) {
       |                         ^
Maintainer: ‘Waldir Leoncio <waldir.leoncio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Waldir",
                    family = "Leoncio",
                    role = c("aut", "cre"),
                    email = "waldir.leoncio@gmail.com")
as necessary.
Found the following HTML validation problems:
fillCustomLinkagePlan.html:80:1 (fillCustomLinkagePlan.Rd:30): Warning: missing </ul> before </div>
fillRandomLinkagePlan.html:83:1 (fillRandomLinkagePlan.Rd:31): Warning: missing </ul> before </div>
Maintainer: ‘Andreas Alfons <alfons@ese.eur.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wolfgang Rolke <wolfgang.rolke@upr.edu>’

The Description field contains
  value.  Details can be found in <arXiv:2007.04727>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nusrat Rabbee <rabbee@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Danyi",
                      family = "Xiong",
                      role = "aut"),
               person(given = "Teeranan",
                      family = "Pokaprakarn",
                      role = "aut"),
               person(given = "Hiroto",
                      family = "Udagawa",
                      role = "aut"),
               person(given = "Nusrat",
                      family = "Rabbee",
                      role = c("aut", "cre"),
                      email = "rabbee@berkeley.edu"))
as necessary.
Found the following files/directories:
  ‘database.csv’ ‘output.csv’ ‘output_clst.csv’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bootstrap-projection.R’ ‘bootstrap_CIs.Rd’ ‘bundle_sim.R’
    ‘calc_coverage.R’ ‘calc_rejection.R’ ‘extrapolate_coverage.Rd’
    ‘utilities.R’
Maintainer: ‘Kevin Toohey <kevintoohey@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Toohey",
                    role = c("aut", "cre"),
                    email = "kevintoohey@live.com")
as necessary.
Found the following HTML validation problems:
as.data.frame.SimInf_abc.html:51:1 (as.data.frame.SimInf_abc.Rd:12): Warning: missing </ul> before </div>
as.data.frame.SimInf_events.html:51:1 (as.data.frame.SimInf_events.Rd:12): Warning: missing </ul> before </div>
as.data.frame.SimInf_indiv_events.html:51:1 (as.data.frame.SimInf_indiv_events.Rd:12): Warning: missing </ul> before </div>
plot-SimInf_abc-method.html:56:1 (plot-SimInf_abc-method.Rd:15): Warning: missing </ul> before </div>
plot-SimInf_events-method.html:55:1 (plot-SimInf_events-method.Rd:14): Warning: missing </ul> before </div>
plot-SimInf_indiv_events-method.html:57:1 (plot-SimInf_indiv_events-method.Rd:16): Warning: missing </ul> before </div>
plot-SimInf_pfilter-method.html:62:1 (plot-SimInf_pfilter-method.Rd:21): Warning: missing </ul> before </div>
prevalence.html:92:1 (prevalence.Rd:45): Warning: missing </ul> before </div>
trajectory.html:69:1 (trajectory.Rd:27): Warning: missing </ul> before </div>
checkRd: (-1) internal.statistics.one.lm.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) internal.statistics.one.lm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Luke Miratrix <lmiratrix@g.harvard.edu>’

The Description field contains
  <arXiv:2002.05746>. This package provides methods for fitting ITS
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Charlie Wusuo Liu <liuwusuo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Charlie", "Wusuo"),
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwusuo@gmail.com")
as necessary.
Found the following HTML validation problems:
modified_simulation.html:46:1 (modified_simulation.Rd:10): Warning: missing </ul> before </div>
sim_fun_test2.html:49:1 (sim_fun_test2.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Rex Parsons <Rex.Parsons94@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hyung Park <parkh15@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyung",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "parkh15@nyu.edu"),
               person(given = "Eva",
                      family = "Petkova",
                      role = "aut"),
               person(given = "Thaddeus",
                      family = "Tarpey",
                      role = "aut"),
               person(given = c("R.", "Todd"),
                      family = "Ogden",
                      role = "aut"))
as necessary.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Found the following HTML validation problems:
valid_corr.html:432:204 (valid_corr.Rd:278): Warning: missing </p> before <a>
valid_corr.html:432:5 (valid_corr.Rd:278): Warning: missing </a> before <a>
valid_corr.html:432:369 (valid_corr.Rd:278): Warning: inserting implicit <p>
valid_corr.html:432:373 (valid_corr.Rd:278): Warning: discarding unexpected </a>
valid_corr.html:432:369 (valid_corr.Rd:278): Warning: trimming empty <p>
valid_corr2.html:437:204 (valid_corr2.Rd:280): Warning: missing </p> before <a>
valid_corr2.html:437:5 (valid_corr2.Rd:280): Warning: missing </a> before <a>
valid_corr2.html:437:369 (valid_corr2.Rd:280): Warning: inserting implicit <p>
valid_corr2.html:437:373 (valid_corr2.Rd:280): Warning: discarding unexpected </a>
valid_corr2.html:437:369 (valid_corr2.Rd:280): Warning: trimming empty <p>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘si_calculate.Rd’
Maintainer: ‘Rami Yaari <ramiyaari@gmail.com>’

The Description field contains
  & Yaari (2018) <arXiv:1807.04202>.  Dattner et al. (2017)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
plot.confint.simode.html:76:1 (plot.confint.simode.Rd:28): Warning: missing </ul> before </div>
plot.list.simode.html:118:1 (plot.list.simode.Rd:58): Warning: missing </ul> before </div>
plot.profile.simode.html:71:1 (plot.profile.simode.Rd:26): Warning: missing </ul> before </div>
plot.simode.html:110:1 (plot.simode.Rd:53): Warning: missing </ul> before </div>
plot_trace.html:80:1 (plot_trace.Rd:30): Warning: missing </ul> before </div>
print.confint.simode.html:51:1 (print.confint.simode.Rd:12): Warning: missing </ul> before </div>
print.profile.simode.html:51:1 (print.profile.simode.Rd:12): Warning: missing </ul> before </div>
print.simode.html:51:1 (print.simode.Rd:12): Warning: missing </ul> before </div>
print.summary.simode.html:51:1 (print.summary.simode.Rd:12): Warning: missing </ul> before </div>
summary.simode.html:55:1 (summary.simode.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.coxsim.html:51:1 (as.data.frame.coxsim.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘anon.R’ ‘anonymise.Rd’
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Maintainer: ‘Nathan Sheffield <nathan@code.databio.org>’

The BugReports field in DESCRIPTION has
  https://github.com/databio/simpleCache
which should likely be
  https://github.com/databio/simpleCache/issues
instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    simpleCache [0.0.1]
Found the following HTML validation problems:
addCacheSearchEnvironment.html:48:1 (addCacheSearchEnvironment.Rd:10): Warning: missing </ul> before </div>
secToTime.html:50:1 (secToTime.Rd:12): Warning: missing </ul> before </div>
setCacheBuildDir.html:46:1 (setCacheBuildDir.Rd:10): Warning: missing </ul> before </div>
setSharedCacheDir.html:48:1 (setSharedCacheDir.Rd:10): Warning: missing </ul> before </div>
simpleCacheGlobal.html:50:1 (simpleCacheGlobal.Rd:12): Warning: missing </ul> before </div>
simpleCacheShared.html:48:1 (simpleCacheShared.Rd:10): Warning: missing </ul> before </div>
simpleCacheSharedGlobal.html:46:1 (simpleCacheSharedGlobal.Rd:10): Warning: missing </ul> before </div>
tic.html:51:1 (tic.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Stephen Wisser <swisser98@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Stephen", "C"),
                      family = "Wisser",
                      role = "aut"),
               person(given = "Stephen",
                      family = "Wisser",
                      role = "cre",
                      email = "swisser98@gmail.com"))
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Found the following HTML validation problems:
merge_named_lists.html:51:1 (merge_named_lists.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Samuel Fernandes <samuelf@illinois.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Augustin Luna <lunaa@cbio.mskcc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Augustin",
                      family = "Luna",
                      role = c("aut", "cre"),
                      email = "lunaa@cbio.mskcc.org"),
               person(given = "Vinodh",
                      family = "Rajapakse",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘markdown_block.R’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
as.list.st_traversal.html:51:1 (as.list.st_traversal.Rd:12): Warning: missing </ul> before </div>
clone.html:46:1 (clone.Rd:10): Warning: missing </ul> before </div>
coface_roots.html:53:1 (coface_roots.Rd:12): Warning: missing </ul> before </div>
cofaces.html:50:1 (cofaces.Rd:12): Warning: missing </ul> before </div>
degree.html:50:1 (degree.Rd:12): Warning: missing </ul> before </div>
expand.html:53:1 (expand.Rd:12): Warning: missing </ul> before </div>
faces.html:50:1 (faces.Rd:12): Warning: missing </ul> before </div>
k_simplices.html:54:1 (k_simplices.Rd:14): Warning: missing </ul> before </div>
k_skeleton.html:54:1 (k_skeleton.Rd:14): Warning: missing </ul> before </div>
level_order.html:50:1 (level_order.Rd:12): Warning: missing </ul> before </div>
link.html:50:1 (link.Rd:12): Warning: missing </ul> before </div>
maximal.html:50:1 (maximal.Rd:12): Warning: missing </ul> before </div>
preorder.html:50:1 (preorder.Rd:12): Warning: missing </ul> before </div>
print.st_traversal.html:51:1 (print.st_traversal.Rd:12): Warning: missing </ul> before </div>
print_simplices.html:77:1 (print_simplices.Rd:15): Warning: missing </ul> before </div>
rips.html:58:1 (rips.Rd:16): Warning: missing </ul> before </div>
threshold.html:54:1 (threshold.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘John P. Nolan  <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "P."),
                      family = "Nolan",
                      role = c("aut", "cre"),
                      email = "jpnolan@american.edu"),
               person(given = c("with", "parts", "adapted", "from"),
                      family = "Fortran",
                      role = "aut"),
               person(given = c("matlab", "code", "by", "Alan"),
                      family = "Genz",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Mercier <amercier@g.harvard.edu>’

The Description field contains
  (2009)<arXiv:0803.0929>.  Koutis I., Levin, A., Peng, R.
  (2013)<arXiv:1209.5821>. Toivonen, H., Mahler, S., Zhou, F.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
SimParamBee.html:448:1 (SimParamBee.Rd:459): Warning: <h5> anchor "Usage" already defined
SimParamBee.html:454:1 (SimParamBee.Rd:463): Warning: <h5> anchor "Arguments" already defined
SimParamBee.html:470:1 (SimParamBee.Rd:473): Warning: <h5> anchor "Examples" already defined
SimParamBee.html:503:1 (SimParamBee.Rd:501): Warning: <h5> anchor "Usage" already defined
SimParamBee.html:509:1 (SimParamBee.Rd:505): Warning: <h5> anchor "Arguments" already defined
SimParamBee.html:525:1 (SimParamBee.Rd:515): Warning: <h5> anchor "Examples" already defined
SimParamBee.html:558:1 (SimParamBee.Rd:543): Warning: <h5> anchor "Usage" already defined
SimParamBee.html:564:1 (SimParamBee.Rd:547): Warning: <h5> anchor "Arguments" already defined
SimParamBee.html:587:1 (SimParamBee.Rd:560): Warning: <h5> anchor "Usage" already defined
SimParamBee.html:593:1 (SimParamBee.Rd:564): Warning: <h5> anchor "Arguments" already defined
combineNULLAndPop.html:53:1 (combineNULLAndPop.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glimpse_na.Rd’
Found the following HTML validation problems:
foretell.html:74:1 (foretell.Rd:28): Warning: missing </ul> before </div>
na.roughfix.html:53:1 (na.roughfix.Rd:12): Warning: missing </ul> before </div>
print.simputation.capabilities.html:51:1 (print.simputation.capabilities.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Found the following HTML validation problems:
plot.sim_reg_summary.html:54:1 (plot.sim_reg_summary.Rd:15): Warning: missing </ul> before </div>
plot_term_marginals.html:68:1 (plot_term_marginals.Rd:24): Warning: missing </ul> before </div>
print.sim_reg_output.html:51:1 (print.sim_reg_output.Rd:12): Warning: missing </ul> before </div>
print.sim_reg_summary.html:51:1 (print.sim_reg_summary.Rd:12): Warning: missing </ul> before </div>
sim_reg.html:133:1 (sim_reg.Rd:63): Warning: missing </ul> before </div>
summary.sim_reg_output.html:55:1 (summary.sim_reg_output.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
makeGlmer.html:69:1 (makeGlmer.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Samuel Benidt <sgbenidt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samuel",
                    family = "Benidt",
                    role = c("aut", "cre"),
                    email = "sgbenidt@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hyung Park <parkh15@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyung",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "parkh15@nyu.edu"),
               person(given = "Eva",
                      family = "Petkova",
                      role = "aut"),
               person(given = "Thaddeus",
                      family = "Tarpey",
                      role = "aut"),
               person(given = c("R.", "Todd"),
                      family = "Ogden",
                      role = "aut"))
as necessary.

The Description field contains
  dose rules" <arXiv:2006.00267v2> for detail of the method. The model
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
params.html:115:1 (params.Rd:54): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_matrix2lavaan.html:44:1 (check_matrix2lavaan.Rd:9): Warning: missing </ul> before </div>
Specified C++14: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Version (Date)
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.

The Description field contains
  Van Aelst and Zamar (2019) <arXiv:1812.05678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adrian Staempfli <adrian.staempfli@fhsg.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Staempfli",
                      role = c("aut", "cre"),
                      email = "adrian.staempfli@fhsg.ch"),
               person(given = "Christoph",
                      family = "Strauss",
                      role = "aut"),
               person(given = "Michael",
                      family = "Schmid",
                      role = "aut"))
as necessary.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = "Kristopher",
                      family = "Kapphahn",
                      role = "aut"),
               person(given = "Ariadna",
                      family = "Garcia",
                      role = "aut"),
               person(given = "Manisha",
                      family = "Desai",
                      role = "aut"),
               person(given = c("Maria", "E."),
                      family = "Montez-Rath",
                      role = "aut"))
as necessary.

The Description field contains
  the main wrapper function. See Montez-Rath et al. <arXiv:1709.10074>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) make_one_dataset.Rd:67: Lost braces; missing escapes or markup?
    67 |  \code{within.SD} to be extremely small (e.g., $1 * 10^{-7}$) and all corresponding correlations in matrix
       |                                                        ^
Found the following HTML validation problems:
Ma_cpp.html:50:1 (Ma_cpp.Rd:12): Warning: missing </ul> before </div>
Ma_cpp_vec.html:46:1 (Ma_cpp_vec.Rd:10): Warning: missing </ul> before </div>
diff_inv.html:62:1 (diff_inv.Rd:22): Warning: missing </ul> before </div>
do_polyroot_arma.html:46:1 (do_polyroot_arma.Rd:10): Warning: missing </ul> before </div>
do_polyroot_cpp.html:46:1 (do_polyroot_cpp.Rd:10): Warning: missing </ul> before </div>
dot-acf.html:61:1 (dot-acf.Rd:18): Warning: missing </ul> before </div>
rtruncated_normal.html:62:1 (rtruncated_normal.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

The Description field contains
  <arXiv:1607.00021>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) add_bold.Rd:15: Lost braces; missing escapes or markup?
    15 | For example, in latex it would take "2" and output "{\\bf 2}"; in html
       |                                                     ^
Maintainer: ‘Beilun Wang <bw4mw@virginia.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/QData/SIMULE
which should likely be
  https://github.com/QData/SIMULE/issues
instead.
Maintainer: ‘Martin Nahuel Garcia <garcia.martin@inta.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Martin", "Nahuel"),
                    family = "Garcia",
                    role = c("aut", "cre"),
                    email = "garcia.martin@inta.gob.ar")
as necessary.
Maintainer: ‘Nikos Sidiropoulos <nikos.sidiro@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rick Dale <racdale@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rick",
                      family = "Dale",
                      role = c("aut", "cre"),
                      email = "racdale@gmail.com"),
               person(given = c("Harish", "S."),
                      family = "Bhat",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
parse_check.html:55:1 (parse_check.Rd:15): Warning: missing </ul> before </div>
pretty_merge.html:50:1 (pretty_merge.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate-effect-sizes.R’
Found the following HTML validation problems:
SCD_effect_sizes.html:48:1 (SCD_effect_sizes.Rd:11): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘debug.R’
Found the following HTML validation problems:
hclust_haystack.html:93:1 (hclust_haystack.Rd:47): Warning: missing </ul> before </div>
kde2d_faster.html:50:1 (kde2d_faster.Rd:12): Warning: missing </ul> before </div>
kmeans_haystack.html:68:1 (kmeans_haystack.Rd:24): Warning: missing </ul> before </div>
plot_compare_ranks.html:54:1 (plot_compare_ranks.Rd:14): Warning: missing </ul> before </div>
plot_gene_haystack.html:97:1 (plot_gene_haystack.Rd:49): Warning: missing </ul> before </div>
plot_gene_set_haystack.html:97:1 (plot_gene_set_haystack.Rd:49): Warning: missing </ul> before </div>
plot_rand_KLD.html:61:1 (plot_rand_KLD.Rd:16): Warning: missing </ul> before </div>
plot_rand_fit.html:53:1 (plot_rand_fit.Rd:15): Warning: missing </ul> before </div>
write_haystack.html:50:1 (write_haystack.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
tiltedgaussian.html:58:1 (tiltedgaussian.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Boxiang Liu <jollier.liu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Boxiang",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "jollier.liu@gmail.com")
as necessary.
Maintainer: ‘Federico Vivaldi <federico-vivaldi@virgilio.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Federico", "Vivaldi;", "Tommaso"),
                      family = "Lomonaco",
                      role = "aut"),
               person(given = "Federico",
                      family = "Vivaldi",
                      role = "cre",
                      email = "federico-vivaldi@virgilio.it"))
as necessary.
checkRd: (-1) sim.bdh.age.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:70: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Oscar Garcia <garcia@dasometrics.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oscar",
                    family = "Garcia",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0002-8995-1341")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jedrzej S. Bojanowski <jedrzej.bojanowski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jedrzej", "S."),
                    family = "Bojanowski",
                    role = c("aut", "cre"),
                    email = "jedrzej.bojanowski@gmail.com")
as necessary.
Maintainer: ‘F Scott Dahlgren <fdahlgr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("F", "Scott"),
                      family = "Dahlgren",
                      role = c("aut", "cre"),
                      email = "fdahlgr@gmail.com"),
               person(given = c("Ivo", "M"),
                      family = "Foppa",
                      role = "aut"))
as necessary.
Maintainer: ‘Clement Benard <clement.benard5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Clement",
                      family = "Benard",
                      role = c("aut", "cre"),
                      email = "clement.benard5@gmail.com"),
               person(given = c("Marvin", "N."),
                      family = "Wright",
                      role = c("ctb", "cph")))
as necessary.
Specified C++11: please drop specification unless essential
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:89:1 (inst/NEWS.Rd:52): Warning: missing </ul> before </div>
NEWS.html:69:1 (inst/NEWS.Rd:40): Warning: <h4> anchor "Bug-fixes" already defined
Maintainer: ‘Mélanie Huchon <melanie.huchon@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boris",
                      family = "Hejblum",
                      role = "aut"),
               person(given = "Mélanie",
                      family = "Huchon",
                      role = c("aut", "cre"),
                      email = "melanie.huchon@u-bordeaux.fr"))
as necessary.
Maintainer: ‘Hyunseung Kang <hyunseung@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hyunseung",
                    family = "Kang",
                    role = c("aut", "cre"),
                    email = "hyunseung@stat.wisc.edu")
as necessary.
checkRd: (-1) rawCCD.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{distr.type}{school district type (constructed for illustration purposes; (values={"A", "B", "C", "D"})).}
       |                                                                                          ^
checkRd: (-1) selectMatch.Rd:61: Lost braces; missing escapes or markup?
    61 | \item{replacementUnitsFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "replacementUnits.csv"}
       |                                                                    ^
checkRd: (-1) selectMatch.Rd:63: Lost braces; missing escapes or markup?
    63 | \item{subUnitTableFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "subUnitTable.csv"}
       |                                                                ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                  ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                                                                                  ^
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Phillip", "B."),
                    family = "Nicol",
                    role = c("aut", "cre"),
                    email = "philnicol740@gmail.com")
as necessary.
Maintainer: ‘Jonas Stein <news@jonasstein.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonas",
                      family = "Stein",
                      role = c("aut", "cre"),
                      email = "news@jonasstein.de"),
               person(given = "Ben",
                      family = "Tupper",
                      role = "aut"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following HTML validation problems:
sits_labels-set-.class_cube.html:53:1 (sits_labels-set-.class_cube.Rd:14): Warning: missing </ul> before </div>
sits_labels-set-.default.html:53:1 (sits_labels-set-.default.Rd:14): Warning: missing </ul> before </div>
sits_labels-set-.probs_cube.html:53:1 (sits_labels-set-.probs_cube.Rd:14): Warning: missing </ul> before </div>
sits_labels-set-.sits.html:53:1 (sits_labels-set-.sits.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) ss.cc.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ss.ci.Rd:26: Lost braces
    26 | \item{alpha}{The eqn{\\alpha} error used to compute the \eqn{100*(1-\\alpha)\%} confidence interval}
       |                     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |                 ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                            ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                                        ^
Author field differs from that derived from Authors@R
  Author:    ‘Sean Kross [aut], Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Fred Hutchinson Cancer Center [fnd] (007ps6h72)’
  Authors@R: ‘Sean Kross [aut], Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Fred Hutchinson Cancer Center [fnd] (ROR: <https://ror.org/007ps6h72>)’
Found the following HTML validation problems:
bucket_create_if_not.html:52:1 (bucket_create_if_not.Rd:14): Warning: missing </ul> before </div>
paginate_aws_marker.html:55:1 (paginate_aws_marker.Rd:15): Warning: missing </ul> before </div>
paginate_aws_token.html:55:1 (paginate_aws_token.Rd:15): Warning: missing </ul> before </div>
path_s3_build.html:46:1 (path_s3_build.Rd:10): Warning: missing </ul> before </div>
wait_until.html:53:1 (wait_until.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SiZer.R’
Found the following HTML validation problems:
logLik.PiecewiseLinear.html:51:1 (logLik.PiecewiseLinear.Rd:12): Warning: missing </ul> before </div>
logLik.bent_cable.html:51:1 (logLik.bent_cable.Rd:12): Warning: missing </ul> before </div>
plot.LocallyWeightedPolynomial.html:82:1 (plot.LocallyWeightedPolynomial.Rd:33): Warning: missing </ul> before </div>
plot.PiecewiseLinear.html:59:1 (plot.PiecewiseLinear.Rd:16): Warning: missing </ul> before </div>
predict.PiecewiseLinear.html:55:1 (predict.PiecewiseLinear.Rd:14): Warning: missing </ul> before </div>
predict.bent_cable.html:55:1 (predict.bent_cable.Rd:14): Warning: missing </ul> before </div>
print.PiecewiseLinear.html:51:1 (print.PiecewiseLinear.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Joe Roberts <jorobert@tibco.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("TIBCO", "Software"),
                      family = "Inc.",
                      role = "aut"),
               person(given = "Joe",
                      family = "Roberts",
                      role = "cre",
                      email = "jorobert@tibco.com"))
as necessary.
Found the following HTML validation problems:
write_spss.html:70:1 (write_spss.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
checkModel.html:48:1 (checkModel.Rd:11): Warning: missing </ul> before </div>
new_image.html:58:1 (new_image.Rd:18): Warning: missing </ul> before </div>
print.DNN.html:51:1 (print.DNN.Rd:12): Warning: missing </ul> before </div>
print.bioticStruct.html:51:1 (print.bioticStruct.Rd:12): Warning: missing </ul> before </div>
print.sjSDMinternalStructure.html:51:1 (print.sjSDMinternalStructure.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
                      comment = "Shawn"),
               person(given = "Zhangchen",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Larisa"),
                      family = "Miropolsky",
                      role = "aut"),
               person(given = "Michael",
                      family = "Wu",
                      role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "lee7801@snu.ac.kr",
                      comment = "Shawn"))
as necessary.
Maintainer: ‘Chun Fung Kwok <jkwok@svi.edu.au>’

The BugReports field in DESCRIPTION has
  https://github.com/kcf-jackson/sketch
which should likely be
  https://github.com/kcf-jackson/sketch/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ext-annotate_expr.R’
Found the following HTML validation problems:
annotate_exprs.html:46:1 (annotate_exprs.Rd:10): Warning: missing </ul> before </div>
header-functions.html:66:1 (header-functions.Rd:25): Warning: missing </ul> before </div>
predicate_component.html:222:1 (predicate_component.Rd:143): Warning: missing </ul> before </div>
split_rules.html:49:1 (split_rules.Rd:11): Warning: missing </ul> before </div>
to_json.html:62:1 (to_json.Rd:19): Warning: missing </ul> before </div>
to_shiny_tag.html:46:1 (to_shiny_tag.Rd:10): Warning: missing </ul> before </div>
websocket.html:129:1 (websocket.Rd:103): Warning: <h5> anchor "Usage" already defined
websocket.html:145:1 (websocket.Rd:113): Warning: <h5> anchor "Usage" already defined
websocket.html:161:1 (websocket.Rd:123): Warning: <h5> anchor "Usage" already defined
websocket.html:178:1 (websocket.Rd:134): Warning: <h5> anchor "Usage" already defined
websocket.html:195:1 (websocket.Rd:145): Warning: <h5> anchor "Usage" already defined
websocket.html:240:1 (websocket.Rd:174): Warning: <h5> anchor "Usage" already defined
websocket.html:246:1 (websocket.Rd:178): Warning: <h5> anchor "Arguments" already defined
websocket.html:270:1 (websocket.Rd:196): Warning: <h5> anchor "Returns" already defined
websocket.html:318:1 (websocket.Rd:235): Warning: <h5> anchor "Usage" already defined
websocket.html:324:1 (websocket.Rd:239): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Scott",
                      role = c("aut", "cre"),
                      email = "d.scott@auckland.ac.nz"),
               person(given = "Fiona",
                      family = "Grimson",
                      role = "aut"))
as necessary.
Maintainer: ‘Hanmo Li <hanmo@pstat.ucsb.edu>’

The Description field contains
  Mengyang Gu (2023), <arXiv:2310.18611>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Patchanok Srisuradetchai <s.patchanok@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patchanok",
                    family = "Srisuradetchai",
                    role = c("aut", "cre"),
                    email = "s.patchanok@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Ski.Mack.Rd’:
    \keyword{block designs, missing values}
Maintainer: ‘Guang Yang <gyang274@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guang",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "gyang274@gmail.com")
as necessary.
Found the following significant warnings:
  matrix_minmax.cpp:13:7: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  matrix_minmax.cpp:17:13: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  matrix_minmax.cpp:33:7: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  matrix_minmax.cpp:37:13: warning: 'max' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  skm.cpp:396:14: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  skm.cpp:483:14: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  skm_gdp.cpp:57:32: warning: 'min' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/skm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Found the following HTML validation problems:
hpdi.html:50:1 (hpdi.Rd:12): Warning: missing </ul> before </div>
plot.skyscapeR.pdf.html:80:1 (plot.skyscapeR.pdf.Rd:31): Warning: missing </ul> before </div>
plot.skyscapeR.sigTest.html:79:1 (plot.skyscapeR.sigTest.Rd:30): Warning: missing </ul> before </div>
plot.skyscapeR.spd.html:71:1 (plot.skyscapeR.spd.Rd:22): Warning: missing </ul> before </div>
pval2stars.html:46:1 (pval2stars.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Matt Kaye <mrkaye97@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bob",
                      family = "Rudis",
                      role = c("aut", "cre")),
               person(given = "Jay",
                      family = "Jacobs",
                      role = "ctb"),
               person(given = "David",
                      family = "Severski",
                      role = "ctb"),
               person(given = "Quinn",
                      family = "Weber",
                      role = "ctb"),
               person(given = "Konrad",
                      family = "Karczewski",
                      role = "ctb"),
               person(given = "Shinya",
                      family = "Uryu",
                      role = "ctb"),
               person(given = "Gregory",
                      family = "Jefferis",
                      role = "ctb"),
               person(given = "Ed",
                      family = "Niles",
                      role = "ctb"),
               person(given = "Rick",
                      family = "Saporta",
                      role = "ctb"),
               person(given = "Jonathan",
                      family = "Sidi",
                      role = c("aut", "ctb")),
               person(given = "Matt",
                      family = "Kaye",
                      role = c("aut", "ctb", "cre"),
                      email = "mrkaye97@gmail.com"),
               person(given = "Xinye",
                      family = "Li",
                      role = "ctb"),
               person(given = "Andrie",
                      family = "de Vries",
                      role = c("aut", "ctb")))
as necessary.
Found the following HTML validation problems:
slackr_delete.html:58:1 (slackr_delete.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  <arXiv:2007.00529>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/unina-sfere/slasso
which should likely be
  https://github.com/unina-sfere/slasso/issues
instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/slasso.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) outliers.hdts.Rd:44: Lost braces; missing escapes or markup?
    44 |   \item I.cov.rob - The matrix (V'GnV)^{-1} used to compute the statistics to detect the idiosyncratic outliers.
       |                                        ^
Maintainer: ‘Ilana Trumble <itrumble@unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Hudgens",
                      role = "aut"),
               person(given = "Ilana",
                      family = "Trumble",
                      role = c("aut", "cre"),
                      email = "itrumble@unc.edu"),
               person(given = "Andrew",
                      family = "Allmon",
                      role = "aut"))
as necessary.
Maintainer: ‘Muntashir-Al-Arefin <sheen4783@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Muntashir-Al-Arefin",
                      role = c("aut", "cre"),
                      email = "sheen4783@gmail.com"),
               person(given = c("Prof.", "Md.", "Ayub"),
                      family = "Al.",
                      role = "aut"))
as necessary.
Maintainer: ‘Christine Blume <christine.blume@sbg.ac.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.linear2ph.html:51:1 (print.linear2ph.Rd:12): Warning: missing </ul> before </div>
print.logistic2ph.html:51:1 (print.logistic2ph.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
capacity_output_graph_boxplots.html:101:1 (capacity_output_graph_boxplots.Rd:54): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ts_load.html:53:1 (ts_load.Rd:15): Warning: missing </ul> before </div>
ts_save.html:50:1 (ts_save.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Berwin A Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "F.L."),
                      family = "Ramsey",
                      role = "aut"),
               person(given = c("D.W.", "Schafer;", "modifications", "by", "Daniel", "W."),
                      family = "Schafer",
                      role = "aut"),
               person(given = "Jeannie",
                      family = "Sifneos",
                      role = "aut"),
               person(given = c("Berwin", "A.", "Turlach;", "vignettes", "contributed", "by", "Nicholas"),
                      family = "Horton",
                      role = "aut"),
               person(given = "Kate",
                      family = "Aloisio",
                      role = "aut"),
               person(given = "Ruobing",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("with", "corrections", "by", "Randall"),
                      family = "Pruim",
                      role = "aut"),
               person(given = c("Berwin", "A"),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Maintainer: ‘Berwin A Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "F.L."),
                      family = "Ramsey",
                      role = "aut"),
               person(given = c("D.W.", "Schafer;", "modifications", "by", "Daniel", "W."),
                      family = "Schafer",
                      role = "aut"),
               person(given = "Jeannie",
                      family = "Sifneos",
                      role = "aut"),
               person(given = c("Berwin", "A.", "Turlach;", "vignettes", "contributed", "by", "Nicholas"),
                      family = "Horton",
                      role = "aut"),
               person(given = "Linda",
                      family = "Loi",
                      role = "aut"),
               person(given = "Kate",
                      family = "Aloisio",
                      role = "aut"),
               person(given = "Ruobing",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("with", "corrections", "by", "Randall"),
                      family = "Pruim",
                      role = "aut"),
               person(given = c("Berwin", "A"),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Found the following HTML validation problems:
print.slfm.html:51:1 (print.slfm.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shan",
                    family = "Ba",
                    role = c("aut", "cre"),
                    email = "shanbatr@gmail.com")
as necessary.
Found the following HTML validation problems:
Boxplot-methods.html:147:1 (Boxplot-methods.Rd:93): Warning: <h4> anchor "Defaults" already defined
OMs-methods.html:83:1 (OMs-methods.Rd:46): Warning: <h4> anchor "Factors" already defined
OMs-methods.html:98:1 (OMs-methods.Rd:59): Warning: <h4> anchor "Design" already defined
OMs-methods.html:107:1 (OMs-methods.Rd:66): Warning: <h4> anchor "Preset" already defined
File ‘slider/libs/slider.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Everaldo Freitas Guedes <efgestatistico@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/efguedes/SlidingWindows
which should likely be
  https://github.com/efguedes/SlidingWindows/issues
instead.
checkRd: (-1) fit_slim.Rd:24: Lost braces; missing escapes or markup?
    24 | sum(x' V^{-1} (y - x beta)) = 0 as the covariance V tends from V[, , 1] +
       |          ^
Found the following HTML validation problems:
slim.methods.html:51:1 (slim.methods.Rd:14): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
tools_auc.xy.numeric.html:59:1 (tools_auc.xy.numeric.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Emmanuel Caron <emmanuelcaron3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emmanuel",
                      family = "Caron",
                      role = c("aut", "cre"),
                      email = "emmanuelcaron3@gmail.com"),
               person(given = "Jérôme",
                      family = "Dedecker",
                      role = "aut"),
               person(given = "Bertrand",
                      family = "Michel",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1906.06583>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wesley Burr <wesley.burr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wesley",
                      family = "Burr",
                      role = c("aut", "cre"),
                      email = "wesley.burr@gmail.com"),
               person(given = c("with", "contributions", "from", "Karim"),
                      family = "Rahim",
                      role = "aut"))
as necessary.
checkRd: (-1) slp-package.Rd:38: Escaped LaTeX specials: \&
Author field differs from that derived from Authors@R
  Author:    ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (JOSS reviewer, <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (JOSS reviewer, <https://orcid.org/0000-0001-9754-0393>)’
  Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-9754-0393>)’
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:375:1 (inst/NEWS.Rd:198): Warning: <h3> anchor "Changes-in-Version-1.9-7" already defined
Found the following HTML validation problems:
transform.html:75:1 (transform.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cmds.html:46:1 (cmds.Rd:10): Warning: missing </ul> before </div>
mkBmat.html:46:1 (mkBmat.Rd:10): Warning: missing </ul> before </div>
secularEq.html:50:1 (secularEq.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
arg_check_alternative.html:46:1 (arg_check_alternative.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Abhishek Nandy <nandy006@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abhishek",
                    family = "Nandy",
                    role = c("aut", "cre"),
                    email = "nandy006@umn.edu")
as necessary.
Maintainer: ‘William Artman <William_Artman@URMC.Rochester.edu>’

The Description field contains
  outcomes. Please see Artman (2020) <arXiv:2008.02341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
checkRd: (-1) cities_lon_lat.Rd:6: Lost braces
     6 | A subset of world.cities{maps}. Extracted in order to shink number of dependencies. 
       |                         ^
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Dipankar Bandyopadhyay <bandyopd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Xu",
                      role = "aut"),
               person(given = "Dipankar",
                      family = "Bandyopadhyay",
                      role = c("aut", "cre"),
                      email = "bandyopd@gmail.com"),
               person(given = "Douglas",
                      family = "Azevedo",
                      role = "aut"),
               person(given = "Bibhas",
                      family = "Chakraborty",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1902.09386>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.SMARTp.html:51:1 (print.SMARTp.Rd:12): Warning: missing </ul> before </div>
summary.SMARTp.html:51:1 (summary.SMARTp.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ss_api.html:50:1 (ss_api.Rd:12): Warning: missing </ul> before </div>
ss_cols_to_dataframe.html:46:1 (ss_cols_to_dataframe.Rd:10): Warning: missing </ul> before </div>
ss_resp_data_to_dataframe.html:46:1 (ss_resp_data_to_dataframe.Rd:10): Warning: missing </ul> before </div>
to_json.html:47:1 (to_json.Rd:10): Warning: missing </ul> before </div>
unlist_and_replace_null.html:48:1 (unlist_and_replace_null.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Jun Chen <Chen.Jun2@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "Chen.Jun2@mayo.edu"),
               person(given = "Ehsan",
                      family = "Behnam",
                      role = "aut",
                      email = "behnamgh@usc.edu"))
as necessary.
Maintainer: ‘Remko Duursma <remkoduursma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Warton",
                      role = "aut",
                      email = "David.Warton@unsw.edu.au"),
               person(given = "Remko",
                      family = "Duursma",
                      role = c("aut", "cre"),
                      email = "remkoduursma@gmail.com"),
               person(given = "Daniel",
                      family = "Falster",
                      role = "aut"),
               person(given = "Sara",
                      family = "Taskinen.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Herman Jopia <hjopia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Herman",
                    family = "Jopia",
                    role = c("aut", "cre"),
                    email = "hjopia@gmail.com")
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Verbeke",
                      role = c("aut", "cre"),
                      email = "tobias.verbeke@openanalytics.eu"),
               person(given = c("based", "on", "datasets", "provided", "on", "the", "book's"),
                      family = "website",
                      role = "aut"))
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) customerRetentionDemographics.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) customerRetentionDemographics.Rd:11: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:12: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:13: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:15: Escaped LaTeX specials: \$
Found the following HTML validation problems:
coefsmcure.html:56:1 (coefsmcure.Rd:18): Warning: missing </ul> before </div>
em.html:103:1 (em.Rd:39): Warning: missing </ul> before </div>
plotpredictsmcure.html:80:1 (plotpredictsmcure.Rd:30): Warning: missing </ul> before </div>
printsmcure.html:61:1 (printsmcure.Rd:20): Warning: missing </ul> before </div>
smsurv.html:80:1 (smsurv.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Ed Merkle <merklee@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ed",
                      family = "Merkle",
                      role = c("aut", "cre"),
                      email = "merklee@missouri.edu"),
               person(given = "Michael",
                      family = "Smithson",
                      role = "aut"))
as necessary.
checkRd: (-1) trlong.Rd:17: Lost braces
    17 |     \item{\code{resp}}{a factor indicating the transport mode choice, and \code{B} denotes taking the bus, code{D} denotes driving one's own vehicle, \code{F} denotes getting a ride with a friend, \code{O} denotes other, and \code{W} denotes walking}
       |                                                                                                                ^
checkRd: (-1) smdocker_log.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:35-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:19: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
check_for_two_levels.html:46:1 (check_for_two_levels.Rd:10): Warning: missing </ul> before </div>
compute_smd_parts.html:71:1 (compute_smd_parts.Rd:23): Warning: missing </ul> before </div>
lapplyFUNpairwise.html:55:1 (lapplyFUNpairwise.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.smerc_similarity_test.html:56:1 (print.smerc_similarity_test.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                  ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                            ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                          ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                                    ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                              ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                        ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                      ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                                ^
Maintainer: ‘Qian Zhu <zqian@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qian",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "zqian@jimmy.harvard.edu"),
               person(given = "Guo-Cheng",
                      family = "Yuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Darren Wilkinson <darrenjwilkinson@btinternet.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Darren",
                    family = "Wilkinson",
                    role = c("aut", "cre"),
                    email = "darrenjwilkinson@btinternet.com")
as necessary.
Maintainer: ‘Paul Walter <paul.w@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Walter",
                    role = c("aut", "cre"),
                    email = "paul.w@gmx.net")
as necessary.
Found the following HTML validation problems:
print.summary.sem.html:51:1 (print.summary.sem.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
aggregate_aux.html:78:1 (aggregate_aux.Rd:30): Warning: missing </ul> before </div>
aux_mat.html:92:1 (aux_mat.Rd:42): Warning: missing </ul> before </div>
crossdist.html:50:1 (crossdist.Rd:12): Warning: missing </ul> before </div>
distmat.html:47:1 (distmat.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alexey Shipunov <dactylorhiza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Shipunov",
                    role = c("aut", "cre"),
                    email = "dactylorhiza@gmail.com",
                    comment = "with help of Eugenij Altshuler")
as necessary.
Found the following HTML validation problems:
fCreateCashflowMatrix.html:50:1 (fCreateCashflowMatrix.Rd:11): Warning: missing </ul> before </div>
fCreateKernelMatrix.html:52:1 (fCreateKernelMatrix.Rd:11): Warning: missing </ul> before </div>
fCreateTimeVector.html:49:1 (fCreateTimeVector.Rd:9): Warning: missing </ul> before </div>
fFitKernelWeights.html:63:1 (fFitKernelWeights.Rd:19): Warning: missing </ul> before </div>
fGetCashflowsBond.html:46:1 (fGetCashflowsBond.Rd:10): Warning: missing </ul> before </div>
fGetCashflowsLibor.html:49:1 (fGetCashflowsLibor.Rd:11): Warning: missing </ul> before </div>
fGetCashflowsSwap.html:49:1 (fGetCashflowsSwap.Rd:11): Warning: missing </ul> before </div>
fGetTimesBond.html:46:1 (fGetTimesBond.Rd:10): Warning: missing </ul> before </div>
fGetTimesLibor.html:47:1 (fGetTimesLibor.Rd:9): Warning: missing </ul> before </div>
fGetTimesSwap.html:47:1 (fGetTimesSwap.Rd:9): Warning: missing </ul> before </div>
fWilson.html:59:1 (fWilson.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
createAViralPop.html:71:1 (createAViralPop.Rd:23): Warning: missing </ul> before </div>
plotDiversity.pDistance.html:50:1 (plotDiversity.pDistance.Rd:12): Warning: missing </ul> before </div>
plotDiversity.sfs.html:50:1 (plotDiversity.sfs.Rd:12): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
SMITIDvisu-shiny.html:80:1 (SMITIDvisu-shiny.Rd:44): Warning: missing </ul> before </div>
Maintainer: ‘Siddharth Jain <siddharthjain242@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siddharth",
                      family = "Jain",
                      role = c("aut", "cre"),
                      email = "siddharthjain242@gmail.com"),
               person(given = "Prabhanjan",
                      family = "Tattar",
                      role = "aut"))
as necessary.
Maintainer: ‘Adam Lund <adam.lund@math.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Lund",
                    role = c("aut", "cre"),
                    email = "adam.lund@math.ku.dk")
as necessary.

The Description field contains
  Mogensen and Hansen (2019) <arXiv:1805.02407>. Currently Lasso and SCAD
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SMMA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) SMMA.Rd:115: Lost braces
   115 |  is the empirical explained variance from \cite{Meinshausen and B{u}hlmann, 2015}.  See \cite{Lund et al., 2020} for more details and references.
       |                                                                  ^
checkRd: (-1) SMMA.Rd:170: Lost braces
   170 | Meinshausen, N and P. B{u}hlmann (2015). Maximin effects in inhomogeneous large-scale data.
       |                        ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SMME.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Nicolas Vergne <nicolas.vergne@univ-rouen.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vlad", "Stefan"),
                      family = "Barbu",
                      role = "aut"),
               person(given = "Caroline",
                      family = "Berard",
                      role = "aut"),
               person(given = "Dominique",
                      family = "Cellier",
                      role = "aut"),
               person(given = "Mathilde",
                      family = "Sautreuil",
                      role = "aut"),
               person(given = "Nicolas",
                      family = "Vergne",
                      role = c("aut", "cre"),
                      email = "nicolas.vergne@univ-rouen.fr"))
as necessary.
checkRd: (-1) estimMk.Rd:44: Lost braces; missing escapes or markup?
    44 | estimMk returns the transition probability matrix of size (S^{k})xS (with S = length(E)) 
       |                                                              ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/smmR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) getKernel.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getKernel.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
most_recent_changes.html:47:1 (most_recent_changes.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Aldo M. Garay <medina_garay@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aldo", "M."),
                      family = "Garay",
                      role = c("aut", "cre"),
                      email = "medina_garay@yahoo.com"),
               person(given = c("Monique", "Bettio"),
                      family = "Massuia",
                      role = "aut",
                      email = "moniquemassuia@gmail.com"),
               person(given = "Victor",
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Maintainer: ‘Qingan Sun <quinsun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingan",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "quinsun@gmail.com"),
               person(given = "Xiaojun",
                      family = "Li",
                      role = "aut"),
               person(given = c("James", "C"),
                      family = "Sacchettini",
                      role = "aut"))
as necessary.
checkRd: (-1) getGlobalOptimum.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getGlobalOptimum.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getGlobalOptimum.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smoof_function.Rd:10: Lost braces
    10 | or code{smoof_multi_objective_function}. Both single- and multi-objective functions share the following attributes.
       |        ^
Found the following HTML validation problems:
resetEvaluationCounter.html:47:1 (resetEvaluationCounter.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = c("Sharon", "M."),
                      family = "Lutz",
                      role = "ctb"),
               person(given = "Nilanjana",
                      family = "Laha",
                      role = "ctb"),
               person(given = "Christoph",
                      family = "Lange",
                      role = "ctb"))
as necessary.
Maintainer: ‘Nicholas Hamilton <n.hamilton@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "n.hamilton@unsw.edu.au")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  smoother.Rd: TTR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Christian Hennig <christian.hennig@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Hennig",
                    role = c("aut", "cre"),
                    email = "christian.hennig@unibo.it")
as necessary.
Found the following significant warnings:
  ssGeneral.cpp:20:22: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ssGeneral.cpp:28:22: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/smooth.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘Chanwoo Lee <chanwoo.lee@wisc.edu>’

The Description field contains
  estimation with unknown permutations" <arXiv:2111.04681>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Found the following files/directories:
  ‘my_new_social_media_plot.png’
Maintainer: ‘Adrian Bowman <adrian.bowman@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Bowman",
                      role = c("aut", "cre"),
                      email = "adrian.bowman@glasgow.ac.uk"),
               person(given = c("Adelchi", "Azzalini.", "Ported", "to", "R", "by", "B.", "D.", "Ripley", "up", "to", "version"),
                      family = "2.0",
                      role = "aut",
                      email = "ripley@stats.ox.ac.uk"),
               person(given = c("version", "2.1", "by", "Adrian"),
                      family = "Bowman",
                      role = "aut"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "aut"),
               person(given = c("version", "2.2", "by", "Adrian"),
                      family = "Bowman.",
                      role = "aut"))
as necessary.
Maintainer: ‘Dimitris Kavroudakis <dimitris123@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Kavroudakis",
                    role = c("aut", "cre"),
                    email = "dimitris123@gmail.com")
as necessary.
Maintainer: ‘Gabriel Loewinger <gloewinger@gmail.com>’

The Description field contains
  Loewinger et al., (2022) <arXiv:2212.08697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:161:1 (inst/NEWS.Rd:98): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:187:1 (inst/NEWS.Rd:114): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:219:1 (inst/NEWS.Rd:132): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:245:1 (inst/NEWS.Rd:148): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:256:1 (inst/NEWS.Rd:154): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:274:1 (inst/NEWS.Rd:166): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:288:1 (inst/NEWS.Rd:173): Warning: <h4> anchor "Documentation-changes+3A" already defined
NEWS.html:309:1 (inst/NEWS.Rd:185): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:320:1 (inst/NEWS.Rd:191): Warning: <h4> anchor "Documentation-changes+3A" already defined
NEWS.html:335:1 (inst/NEWS.Rd:200): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:352:1 (inst/NEWS.Rd:208): Warning: <h4> anchor "Documentation-changes+3A" already defined
NEWS.html:363:1 (inst/NEWS.Rd:214): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
NEWS.html:400:1 (inst/NEWS.Rd:237): Warning: <h4> anchor "Changes-in-+E2+80+98R+E2+80+99-code+3A" already defined
NEWS.html:411:1 (inst/NEWS.Rd:243): Warning: <h4> anchor "Changes-in-documentation+3A" already defined
NEWS.html:425:1 (inst/NEWS.Rd:250): Warning: <h4> anchor "Miscellaneous-changes+3A" already defined
Maintainer: ‘Wujuan Zhong <zhongwujuan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wujuan",
                    family = "Zhong",
                    role = c("aut", "cre"),
                    email = "zhongwujuan@gmail.com")
as necessary.
Maintainer: ‘Samuel Blanck <samuel.blanck@univ-lille.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillemette",
                      family = "Marot",
                      role = c("aut", "cre")),
               person(given = "Samuel",
                      family = "Blanck",
                      role = "cre",
                      email = "samuel.blanck@univ-lille.fr"))
as necessary.
Maintainer: ‘Hector Haffenden <haffendenh@cardiff.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hector",
                    family = "haffenden",
                    role = c("aut", "cre"),
                    email = "haffendenh@cardiff.ac.uk")
as necessary.
checkRd: (-1) SnakesAndLaddersGame.Rd:25: Lost braces; missing escapes or markup?
    25 | {Hector Haffenden} {haffendenh@cardiff.ac.uk}
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sk.R’ ‘sk_export.R’ ‘sk_index.R’ ‘sk_pars.R’ ‘sk_plot.R’
    ‘sk_plot.Rd’ ‘sk_sub.Rd’ ‘sk_var.Rd’ ‘sk_var_mult.Rd’
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                  ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                           ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                                      ^
checkRd: (-1) sk_GLS.Rd:40: Lost braces; missing escapes or markup?
    40 | Operations with V^{-1} are computed using the factorization \code{fac} (see \code{sk_var}), or
       |                   ^
checkRd: (-1) sk_LL.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{quad_form} is z^T V^{-1} z, for the observed response vector z, which is constructed
       |                           ^
checkRd: (-1) sk_var.Rd:41: Lost braces; missing escapes or markup?
    41 | returns the quadratic form X^T V^{-1} X.
       |                                  ^
checkRd: (-1) sk_var.Rd:33: Lost braces; missing escapes or markup?
    33 | either matrix \code{V}, or X^T V^{-1} X, or a factorization ('chol' or 'eigen')
       |                                  ^
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Takayuki Kawashima <kawashima@c.titech.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Toshihiro",
                      family = "Abe",
                      role = "aut",
                      email = "abetosh@ss.nanzan-u.ac.jp"),
               person(given = "Hironori",
                      family = "Fujisawa",
                      role = "aut",
                      email = "fujisawa@ism.ac.jp"),
               person(given = "Takayuki",
                      family = "Kawashima",
                      role = c("aut", "cre"),
                      email = "kawashima@c.titech.ac.jp"))
as necessary.
Maintainer: ‘Benjamin Brew <goldenberglab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bo",
                      family = "Wang",
                      role = "aut"),
               person(given = "Aziz",
                      family = "Mezlini",
                      role = "aut"),
               person(given = "Feyyaz",
                      family = "Demir",
                      role = "aut"),
               person(given = "Marc",
                      family = "Fiume",
                      role = "aut"),
               person(given = "Zhuowen",
                      family = "Tu",
                      role = "aut"),
               person(given = "Michael",
                      family = "Brudno",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Haibe-Kains",
                      role = "aut"),
               person(given = "Anna",
                      family = "Goldenberg",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Brew",
                      role = "cre",
                      email = "goldenberglab@gmail.com"))
as necessary.
Maintainer: ‘Wei Sun <sunweisurrey8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "sunweisurrey8@gmail.com"),
               person(given = "Xingye",
                      family = "Qiao",
                      role = "aut"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"))
as necessary.
Maintainer: ‘Jochen Knaus <jo@imbi.uni-freiburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jochen",
                    family = "Knaus",
                    role = c("aut", "cre"),
                    email = "jo@imbi.uni-freiburg.de")
as necessary.
Maintainer: ‘Svetlana Eden <svetlana.eden@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Svetlana",
                    family = "Eden",
                    role = c("aut", "cre"),
                    email = "svetlana.eden@vanderbilt.edu")
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = c("A.", "J."),
                      family = "Rossini",
                      role = "aut"))
as necessary.
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"),
               person(given = c("A.", "J."),
                      family = "Rossini",
                      role = "aut"),
               person(given = "Na",
                      family = "Li",
                      role = "aut"),
               person(given = "H.",
                      family = "Sevcikova",
                      role = "aut"))
as necessary.
Maintainer: ‘Matteo Sesia <msesia@stanford.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SNPknock.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) knockoffGenotypes.Rd:32: Lost braces; missing escapes or markup?
    32 | This function efficiently constructs group-knockoffs of {0,1,2} variables distributed
       |                                                         ^
checkRd: (-1) knockoffGenotypes.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{X}{a {0,1,2} matrix of size n-by-p containing the original variables.}
       |            ^
checkRd: (-1) knockoffGenotypes.Rd:29: Lost braces; missing escapes or markup?
    29 | A {0,1,2} matrix of size n-by-p containing the knockoff variables.
       |   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gtable_ld_associations_combine.Rd’ ‘gtable_ld_grobs.Rd’
Found the following HTML validation problems:
fetch_allele1.default.html:51:1 (fetch_allele1.default.Rd:12): Warning: missing </ul> before </div>
fetch_allele2.default.html:51:1 (fetch_allele2.default.Rd:12): Warning: missing </ul> before </div>
fetch_gds.GenotypeDataSubset.html:51:1 (fetch_gds.GenotypeDataSubset.Rd:12): Warning: missing </ul> before </div>
fetch_gds.default.html:51:1 (fetch_gds.default.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘David Hervas <ddhervas@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hervas",
                    role = c("aut", "cre"),
                    email = "ddhervas@yahoo.es")
as necessary.
checkRd: (-1) plot.selm.Rd:101: Lost braces
   101 | data. Default value for code{which} is \code{2:4} if \code{p>1}, otherwise
       |                             ^
Found the following HTML validation problems:
dst.html:148:1 (dst.Rd:94): Warning: <h3> anchor "Details" already defined
Maintainer: ‘Luis Benavides <luisbv@tec.mx>’

The Description field contains
  (2019) <arXiv:1901.04443>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alireza Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = "aut"),
               person(given = "Asad",
                      family = "Hasan",
                      role = "aut"),
               person(given = "Marshall",
                      family = "Jiang",
                      role = "aut"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = "Alireza",
                      family = "Mahani",
                      role = "cre",
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = c("based", "on", "original", "code", "by", "David"),
                      family = "Brahm",
                      role = "aut"))
as necessary.
Found the following calls to attach():
File ‘SOAR/R/SOAR.R’:
  attach(NULL, pos, basename(directory))
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
Attach.html:149:1 (Attach.Rd:91): Warning: <h3> anchor "_sec_note" already defined
Found the following files/directories:
  ‘.R_Test’
Maintainer: ‘Maikol Solís <maikol.solis@ucr.ac.cr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maikol",
                    family = "Solís",
                    role = c("aut", "cre"),
                    email = "maikol.solis@ucr.ac.cr")
as necessary.

The Description field contains
  M. (2018) <arXiv:1803.03333>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
add.category.relations.html:68:1 (add.category.relations.Rd:24): Warning: missing </ul> before </div>
add.count.html:62:1 (add.count.Rd:19): Warning: missing </ul> before </div>
add.density.html:68:1 (add.density.Rd:24): Warning: missing </ul> before </div>
rename_aes.html:49:1 (rename_aes.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-get_survey.html:50:1 (dot-get_survey.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PowerRelation.R’ ‘SocialRanking.R’ ‘copeland.R’ ‘doRanking.Rd’
    ‘elementLookup.Rd’ ‘generator.R’ ‘makePowerRelationMonotonic.R’
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
Maintainer: ‘Kieran Healy <kjhealy@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                          ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                        ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                                     ^
Maintainer: ‘Yang Li <yangli.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yangli.stat@gmail.com"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"))
as necessary.
checkRd: (-1) s_soda_pred.Rd:8: Lost braces; missing escapes or markup?
     8 | S-SODA assumes within each slice the X vector follow multivariate normal distribution. This function predicts the response y by reverting the P(X | slice(y)) to P(slice(y) | X), and estimates the E(y|X) as sum_{h} E(y | slice(y)=h, X) P (slice(y)=h | X)
       |                                                                                                                                                                                                                   ^
checkRd: (-1) db_compact.Rd:41: Lost braces; missing escapes or markup?
    41 | database structure will be set to true. See GET /{db}. You can also obtain a list of
       |                                                  ^
Found the following HTML validation problems:
Cushion.html:168:1 (Cushion.Rd:161): Warning: <h5> anchor "Usage" already defined
Cushion.html:174:1 (Cushion.Rd:165): Warning: <h5> anchor "Arguments" already defined
Cushion.html:199:1 (Cushion.Rd:180): Warning: <h5> anchor "Usage" already defined
Cushion.html:205:1 (Cushion.Rd:184): Warning: <h5> anchor "Arguments" already defined
Cushion.html:231:1 (Cushion.Rd:200): Warning: <h5> anchor "Usage" already defined
Cushion.html:248:1 (Cushion.Rd:211): Warning: <h5> anchor "Usage" already defined
Cushion.html:264:1 (Cushion.Rd:221): Warning: <h5> anchor "Usage" already defined
Cushion.html:280:1 (Cushion.Rd:231): Warning: <h5> anchor "Usage" already defined
Cushion.html:296:1 (Cushion.Rd:241): Warning: <h5> anchor "Usage" already defined
Cushion.html:302:1 (Cushion.Rd:245): Warning: <h5> anchor "Arguments" already defined
attach_get-defunct.html:46:1 (attach_get-defunct.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Luis Diaz-Garcia <diazgarcia@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luis",
                    family = "Diaz-Garcia",
                    role = c("aut", "cre"),
                    email = "diazgarcia@wisc.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jose D. Loera <jose.loera@inegi.org.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jose", "D."),
                    family = "Loera",
                    role = c("aut", "cre"),
                    email = "jose.loera@inegi.org.mx")
as necessary.
Running ‘tests.R’ [1s/1s]
  Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...27c27
< * : checkEqualsNumeric(sens(r = ref.array, p = pred.array, groups = ref.groups),  run in 0.111 sec ... OK                    kind msg
---
>                     kind msg
Maintainer: ‘G. Peters <peters.activities@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Peters",
                    role = c("aut", "cre"),
                    email = "peters.activities@gmail.com",
                    comment = "Ed.")
as necessary.
Found the following HTML validation problems:
Ssimpute.als.html:100:1 (Ssimpute.als.Rd:50): Warning: missing </ul> before </div>
Ssimpute.svd.html:96:1 (Ssimpute.svd.Rd:46): Warning: missing </ul> before </div>
Ssvd.als.html:100:1 (Ssvd.als.Rd:50): Warning: missing </ul> before </div>
clean.warm.start.html:46:1 (clean.warm.start.Rd:10): Warning: missing </ul> before </div>
simpute.als.html:100:1 (simpute.als.Rd:50): Warning: missing </ul> before </div>
simpute.svd.html:96:1 (simpute.svd.Rd:46): Warning: missing </ul> before </div>
softImpute.x.Incomplete.html:114:1 (softImpute.x.Incomplete.Rd:62): Warning: missing </ul> before </div>
softImpute.x.matrix.html:116:1 (softImpute.x.matrix.Rd:62): Warning: missing </ul> before </div>
Maintainer: ‘Seungjun Ahn <seungjun.ahn@mountsinai.org>’

The Description field contains
  <arXiv:2303.13702v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘KFactor.Rd’:
    \keyword{Nomograph; Particle-size; Organic matter; [TRUNCATED]
  File ‘RFactor_calc.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘RFactor_est.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘SoilConservation.Rd’:
    \keyword{Soil Conservation; Erosivity index; R-Fac [TRUNCATED]
  File ‘SoilLoss.Rd’:
    \keyword{Soil Loss; Water Erosion; R Factor; K Fac [TRUNCATED]
Found the following HTML validation problems:
get_mapunit_from_NASIS.html:90:1 (get_mapunit_from_NASIS.Rd:46): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:140:1 (inst/NEWS.Rd:88): Warning: missing </ul> before </div>
NEWS.html:62:1 (inst/NEWS.Rd:34): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:77:1 (inst/NEWS.Rd:45): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:106:1 (inst/NEWS.Rd:67): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:121:1 (inst/NEWS.Rd:78): Warning: <h4> anchor "NEW-FEATURES" already defined
Found the following HTML validation problems:
RMSE.html:54:1 (RMSE.Rd:14): Warning: missing </ul> before </div>
plot.fitSHP.html:51:1 (plot.fitSHP.Rd:12): Warning: missing </ul> before </div>
predict.fitSHP.html:63:1 (predict.fitSHP.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Anderson Rodrigo da Silva <anderson.agro@hotmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) llwrPTF.Rd:7: Escaped LaTeX specials: \&
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenglong",
                      family = "Ye",
                      role = "aut",
                      email = "yexxx323@umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuhong",
                      family = "Yang",
                      role = "aut",
                      email = "yyang@stat.umn.edu"))
as necessary.
Maintainer: ‘Carlos A. Sierra <csierra@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A."),
                      family = "Sierra",
                      role = c("aut", "cre"),
                      email = "csierra@bgc-jena.mpg.de"),
               person(given = "Markus",
                      family = "Mueller",
                      role = "aut"))
as necessary.
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emanuele",
                      family = "Cordano",
                      role = c("aut", "cre"),
                      email = "emanuele.cordano@gmail.com"),
               person(given = "Daniele",
                      family = "Andreis",
                      role = "aut"),
               person(given = "Fabio",
                      family = "Zottele",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhaoliang He <1024299329@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoliang",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "1024299329@qq.com"),
               person(given = "Linsui",
                      family = "Deng",
                      role = "aut",
                      email = "1175520015@qq.com"),
               person(given = "Kaiwen",
                      family = "Tan",
                      role = "aut",
                      email = "913596401@qq.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘meteoReaders.R’
Maintainer: ‘Jasper Van doninck <vandoninck.jasper@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jasper",
                    family = "Van doninck",
                    role = c("aut", "cre"),
                    email = "vandoninck.jasper@gmail.com")
as necessary.
Found the following HTML validation problems:
isolationForest.html:144:1 (isolationForest.Rd:141): Warning: <h5> anchor "Usage" already defined
isolationForest.html:158:1 (isolationForest.Rd:150): Warning: <h5> anchor "Usage" already defined
isolationForest.html:174:1 (isolationForest.Rd:160): Warning: <h5> anchor "Usage" already defined
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bijan",
                    family = "Seyednasrollah",
                    role = c("aut", "cre"),
                    email = "bijan.s.nasr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘DayOfYear.Rd’:
    \keyword{DOY,}
checkRd: (-1) solr_mlt.Rd:70: Lost braces; missing escapes or markup?
    70 | TermVector DEFAULT_FIELD_NAMES = new String[] {"contents"}
       |                                               ^
Found the following HTML validation problems:
collection_requeststatus.html:65:1 (collection_requeststatus.Rd:22): Warning: missing </ul> before </div>
is-sr.html:54:1 (is-sr.Rd:16): Warning: missing </ul> before </div>
makemultiargs.html:48:1 (makemultiargs.Rd:11): Warning: missing </ul> before </div>
checkRd: (-1) solve_pH_from_AT.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:93: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Maintainer: ‘livio finos <livio@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "livio",
                    family = "finos",
                    role = c("aut", "cre"),
                    email = "livio@stat.unipd.it")
as necessary.
Maintainer: ‘Andreas Dominik <andreas.dominik@mni.thm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Dominik",
                    role = c("aut", "cre"),
                    email = "andreas.dominik@mni.thm.de")
as necessary.
Found the following HTML validation problems:
enrich.dirty.html:57:1 (enrich.dirty.Rd:14): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  somsp.Rd: kohonen
  somspa.Rd: kohonen, som
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Charles Berry <ccberry@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Berry",
                    role = c("aut", "cre"),
                    email = "ccberry@ucsd.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘soundSpeed.Rd’
Maintainer: ‘Willem Daniel Schutte <wd.schutte@nwu.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Willem", "Daniel"),
                    family = "Schutte",
                    role = c("aut", "cre"),
                    email = "wd.schutte@nwu.ac.za")
as necessary.
Maintainer: ‘"Zeb Burke-Conte" <zmbc@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeb",
                      family = "Burke-Conte",
                      role = "aut"),
               person(given = "\"Zeb",
                      family = "Burke-Conte\"",
                      role = "cre",
                      email = "zmbc@uw.edu"))
as necessary.
Maintainer: ‘Weimin Zhang <zhangwm@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘asrm.Rd’:
    https://doi.org/10.1111/biom.12997
  File ‘sorocs.Rd’:
    https://doi.org/10.1111/biom.12997
Maintainer: ‘Aurnov Chattopadhyay <aurnovcy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aurnov",
                    family = "Chattopadhyay",
                    role = c("aut", "cre"),
                    email = "aurnovcy@gmail.com")
as necessary.
Found the following HTML validation problems:
render_sortable.html:55:1 (render_sortable.Rd:15): Warning: missing </ul> before </div>
sortable_output.html:58:1 (sortable_output.Rd:18): Warning: missing </ul> before </div>
checkRd: (-1) spe.Rd:101: Lost braces
   101 | code{spe} command; (4) \code{alpha} stores significance level as in
       |     ^
Running examples in ‘SortedEffects-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.spe
> ### Title: Plot output of 'spe' command. The x-axis limits are set to the
> ###   specified range of percentile index.
> ### Aliases: plot.spe
> 
> ### ** Examples
> 
> data("mortgage")
> fm <- deny ~ black + p_irat + hse_inc + ccred + mcred + pubrec + ltv_med +
+ ltv_high + denpmi + selfemp + single + hischl
> test <- spe(fm = fm, data = mortgage, var = "black", method = "logit",
+ us = c(2:98)/100, b = 50)
Using 1 CPUs now.
> 
> plot(x = test, main="APE and SPE of Being Black on the prob of
+ Mortgage Denial", sub="Logit Model", ylab="Change in Probability")
Error in if (lim2) { : argument is not interpretable as logical
Calls: plot -> plot.spe -> plot -> plot.default
Execution halted
checkRd: (-1) load_sorvi_data.Rd:23: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Spencer Graves <spencer.graves@prodsyse.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Graves",
                      role = c("cre", "aut", "cph"),
                      email = "spencer.graves@prodsyse.com"),
               person(given = "Sundar",
                      family = "Dorai-Raj",
                      role = "aut"),
               person(given = "Romain",
                      family = "Francois",
                      role = "ctb"))
as necessary.
Maintainer: ‘Bruno Silva <bmsasilva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Silva",
                    role = c("aut", "cre"),
                    email = "bmsasilva@gmail.com")
as necessary.
Found the following HTML validation problems:
pipe.html:50:1 (pipe.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "J."),
                      family = "Villanueva-Rivera",
                      role = c("aut", "cre"),
                      email = "ljvillanueva@coquipr.com"),
               person(given = c("Bryan", "C."),
                      family = "Pijanowski",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Marcelino <dmarcelino@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Marcelino",
                    role = c("aut", "cre"),
                    email = "dmarcelino@live.com")
as necessary.

The BugReports field in DESCRIPTION has
  http://github.com/danielmarcelino/soundexBR
which should likely be
  http://github.com/danielmarcelino/soundexBR/issues
instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘soundexBR.Rd’:
    http://dx.doi.org/10.2139/ssrn.2320547
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "Daniel"),
                    family = "Young",
                    role = c("aut", "cre"),
                    email = "my4@sanger.ac.uk")
as necessary.
Maintainer: ‘Kevin Ushey <kevinushey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Ushey",
                    role = c("aut", "cre"),
                    email = "kevinushey@gmail.com")
as necessary.
Found the following HTML validation problems:
read.html:53:1 (read.Rd:19): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SouthPark_Script_Data.Rd’ ‘app_server.R’
Maintainer: ‘Matheus Dalsente Krause <krause.d.matheus@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Silvia D'Angelo <silvia.dangelo@ucd.ie>’

The Description field contains
  MCMC algorithm. See D Angelo et al. (2018) <arXiv:1803.07166> and D
  Angelo et al. (2018) <arXiv:1807.03874>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
spacy_download_langmodel_virtualenv.html:47:1 (spacy_download_langmodel_virtualenv.Rd:10): Warning: missing </ul> before </div>
spacy_install_virtualenv.html:46:1 (spacy_install_virtualenv.Rd:10): Warning: missing </ul> before </div>
spacy_uninstall.html:46:1 (spacy_uninstall.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
Maintainer: ‘Vilmantas Gegzna <GegznaV@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: /commits/master
    From: README.md
Found the following HTML validation problems:
rs_enclose_all_with_lines.html:60:1 (rs_enclose_all_with_lines.Rd:15): Warning: missing </ul> before </div>
rs_enclose_selection_with.html:57:1 (rs_enclose_selection_with.Rd:17): Warning: missing </ul> before </div>
rs_insert_at_row_start.html:50:1 (rs_insert_at_row_start.Rd:12): Warning: missing </ul> before </div>
rs_insert_symbol_seq.html:54:1 (rs_insert_symbol_seq.Rd:14): Warning: missing </ul> before </div>
rs_replace_in_selection.html:51:1 (rs_replace_in_selection.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Anne Chao <chao@stat.nthu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne",
                      family = "Chao",
                      role = c("aut", "cre"),
                      email = "chao@stat.nthu.edu.tw"),
               person(given = c("K.", "H."),
                      family = "Ma",
                      role = "aut"),
               person(given = c("T.", "C."),
                      family = "Hsieh",
                      role = "aut"),
               person(given = "Chun-Huo",
                      family = "Chiu",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
FilterRecursive.html:50:1 (FilterRecursive.Rd:12): Warning: missing </ul> before </div>
deprecated.html:88:1 (deprecated.Rd:43): Warning: missing </ul> before </div>
fillInputRows.html:50:1 (fillInputRows.Rd:12): Warning: missing </ul> before </div>
fillOutputRows.html:50:1 (fillOutputRows.Rd:12): Warning: missing </ul> before </div>
findSimList.html:47:1 (findSimList.Rd:11): Warning: missing </ul> before </div>
getOption.html:52:1 (getOption.Rd:14): Warning: missing </ul> before </div>
initialize-method.html:58:1 (initialize-method.Rd:15): Warning: missing </ul> before </div>
keepAttrs.html:50:1 (keepAttrs.Rd:12): Warning: missing </ul> before </div>
savedSimEnv.html:48:1 (savedSimEnv.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cirSpecialQuick.html:71:1 (cirSpecialQuick.Rd:26): Warning: missing </ul> before </div>
distances.html:78:1 (distances.Rd:35): Warning: missing </ul> before </div>
patchSize.html:46:1 (patchSize.Rd:10): Warning: missing </ul> before </div>
spread2-internals.html:104:1 (spread2-internals.Rd:48): Warning: missing </ul> before </div>
testEquivalentMetadata.html:47:1 (testEquivalentMetadata.Rd:10): Warning: missing </ul> before </div>
Unknown package ‘earlywarnings’ in Rd xrefs
Found the following HTML validation problems:
corr_family.html:59:1 (corr_family.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
spod_assert_package.html:79:1 (spod_assert_package.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘Jose Manuel Vera Oteo <vera.josemanuel@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘geocode_cadastral.Rd’:
    \keyword{cadastre,}
    \keyword{geocoding,}
    \keyword{latitude,}
    \keyword{longitude,}
  File ‘to_number.Rd’:
    \keyword{currency,}
    \keyword{euros,}
    \keyword{money,}
  File ‘to_words.Rd’:
    \keyword{integers,}
    \keyword{money,}
    \keyword{spanish,}
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Witten",
                      role = "cre",
                      email = "dwitten@u.washington.edu"))
as necessary.
Maintainer: ‘Aki Ariga <chezou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aki",
                    family = "Ariga",
                    role = c("aut", "cre"),
                    email = "chezou@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chezou/sparkavro
which should likely be
  https://github.com/chezou/sparkavro/issues
instead.
Found the following HTML validation problems:
spark_write_avro.html:60:1 (spark_write_avro.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
hail_config.html:46:1 (hail_config.Rd:10): Warning: missing </ul> before </div>
hail_get_1kg.html:48:1 (hail_get_1kg.Rd:11): Warning: missing </ul> before </div>
hail_install.html:55:1 (hail_install.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Ramnath Vaidyanathan <ramnath.vaidya@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Found the following HTML validation problems:
sparkline-shiny.html:68:1 (sparkline-shiny.Rd:25): Warning: missing </ul> before </div>
sparkline.html:66:1 (sparkline.Rd:22): Warning: missing </ul> before </div>
Found the following HTML validation problems:
sdf_utils.html:56:1 (sdf_utils.Rd:15): Warning: missing </ul> before </div>
summarizers.html:78:1 (summarizers.Rd:36): Warning: missing </ul> before </div>
checkRd: (-1) sdf_unnest.Rd:20: Lost braces
    20 | \code{a1, a2, a3}, then code{sdf_explode(df, a)} will produce output with each record replicated
       |                             ^
Found the following HTML validation problems:
struct_type.html:102:1 (struct_type.Rd:67): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Edgar Ruiz <edgar@rstudio.com>’

The BugReports field in DESCRIPTION has
  https://github.com/r-spark/sparkwarc
which should likely be
  https://github.com/r-spark/sparkwarc/issues
instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
rcpp_read_warc_sample.html:52:1 (rcpp_read_warc_sample.Rd:14): Warning: missing </ul> before </div>
spark_rcpp_read_warc.html:55:1 (spark_rcpp_read_warc.Rd:15): Warning: missing </ul> before </div>
spark_read_warc_sample.html:56:1 (spark_read_warc_sample.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
xgboost_classifier.html:362:1 (xgboost_classifier.Rd:222): Warning: missing </ul> before </div>
Maintainer: ‘Alex Gibberd <a.gibberd@lancaster.ac.uk>’

The Description field contains
  <arXiv:2303.11892>. Options to use classic multivariate Kalman filter
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
inflation.html:57:1 (inflation.Rd:18): Warning: <h4> anchor "+E2+80+98inflation+E2+80+99" already defined
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

The Description field contains
  classifier from Ramey et al. (2017) <arXiv:1602.01182>. Other
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jelmer Ypma <uctpjyy@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jelmer",
                    family = "Ypma",
                    role = c("aut", "cre"),
                    email = "uctpjyy@ucl.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
checkRd: (-1) Coord.to.Pointers.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{triangle=TRUE}{Input \code{rows} and {cols} represent lower
       |                                            ^
checkRd: (-1) Coord.to.Pointers.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{triangle=FALSE}{Input \code{rows} and {cols} represent a full
       |                                             ^
Found the following HTML validation problems:
givens.rotation.html:54:1 (givens.rotation.Rd:14): Warning: missing </ul> before </div>
soft_thresh_R.html:54:1 (soft_thresh_R.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrew Zammit-Mangion <andrewzm@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Takahashi_Davis.Rd’:
    \keyword{factor,}
  File ‘cholsolve.Rd’:
    \keyword{factor,}
  File ‘cholsolveAQinvAT.Rd’:
    \keyword{factor,}
checkRd: (-1) cholsolveAQinvAT.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Solve the equation X = AQ^{-1}t(A) under permutations}
       |                                  ^
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Line",
                      family = "Clemmensen",
                      role = "aut",
                      email = "lhc@imm.dtu.dk"),
               person(given = c("contributions", "by", "Max"),
                      family = "Kuhn",
                      role = "aut"),
               person(given = "Max",
                      family = "Kuhn",
                      role = "cre",
                      email = "mxkuhn@gmail.com"))
as necessary.
Maintainer: ‘Riccardo Rastelli <riccardoras@gmail.com>’

The Description field contains
  <arXiv:1808.09262>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam B Kashlak <kashlak@ualberta.ca>’

The Description field contains
  search method outlined in Kashlak and Kong (2019) <arXiv:1705.02679>
  and in Kashlak (2019) <arXiv:1903.10988>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |    ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |             ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                      ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                   ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                            ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                                     ^
Maintainer: ‘Joseph Mihaljevic <Joseph.Mihaljevic@nau.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  model_parallel.Rd: future_lapply
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lax Chan <laxchan77@gmail.com>’

The Description field contains
  W., Vincent, K (2019) <arXiv:1902.05156>. This package explicitly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘N. Benjamin Erichson <erichson@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("N.", "Benjamin"),
                      family = "Erichson",
                      role = c("aut", "cre"),
                      email = "erichson@uw.edu"),
               person(given = "Peng",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Sasha",
                      family = "Aravkin",
                      role = "aut"))
as necessary.

The Description field contains
  Erichson et al. (2018) <arXiv:1804.00341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marc Ratkovic <ratkovic@princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Ratkovic",
                      role = c("aut", "cre"),
                      email = "ratkovic@princeton.edu"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.sparsereg.Rd:22-23: Lost braces
    22 | \env{main1, main2, main3}{
       |                          ^
checkRd: (-1) plot.sparsereg.Rd:25-27: Lost braces
    25 | \env{xlabel}{
       |             ^
checkRd: (-1) plot.sparsereg.Rd:29-31: Lost braces
    29 | \env{plot.one}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:27-29: Lost braces
    27 | \env{interval}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:31-33: Lost braces
    31 | \env{ci}{
       |         ^
checkRd: (-1) summary.sparsereg.Rd:35-37: Lost braces
    35 | \env{order}{
       |            ^
checkRd: (-1) summary.sparsereg.Rd:39-41: Lost braces
    39 | \env{normal}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:43-45: Lost braces
    43 | \env{select}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:47-48: Lost braces
    47 | \env{printit}{
       |              ^
checkRd: (-1) summary.sparsereg.Rd:50-52: Lost braces
    50 | \env{stage}{
       |            ^
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The Description field contains
  <arXiv:1701.06967>. In the model, a regularization term is added to the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/GjjvdBurg/SparseStep
which should likely be
  https://github.com/GjjvdBurg/SparseStep/issues
instead.
Found the following HTML validation problems:
sparsevctrs_options.html:57:1 (sparsevctrs_options.Rd:29): Warning: missing </ul> before </div>
Found the following HTML validation problems:
getter.html:67:1 (getter.Rd:34): Warning: missing </ul> before </div>
print.sparta.html:51:1 (print.sparta.Rd:12): Warning: missing </ul> before </div>
vec-ops.html:77:1 (vec-ops.Rd:42): Warning: missing </ul> before </div>
Maintainer: ‘Marius Placzek <marius.placzek@med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "T.",
                      family = "Asendorf",
                      role = "aut"),
               person(given = "R.",
                      family = "Gera",
                      role = "aut"),
               person(given = "S.",
                      family = "Islam",
                      role = "aut"),
               person(given = "M.",
                      family = "Harden",
                      role = "aut"),
               person(given = "M.",
                      family = "Placzek",
                      role = "aut"),
               person(given = "Marius",
                      family = "Placzek",
                      role = "cre",
                      email = "marius.placzek@med.uni-goettingen.de"))
as necessary.
Maintainer: ‘Altieri Linda <linda.altieri@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "L.",
                      family = "Altieri",
                      role = "aut"),
               person(given = "D.",
                      family = "Cocchi",
                      role = "aut"),
               person(given = "G.",
                      family = "Roli",
                      role = "aut"),
               person(given = "Altieri",
                      family = "Linda",
                      role = "cre",
                      email = "linda.altieri@unibo.it"))
as necessary.
Maintainer: ‘Fabio Sigrist <fabiosigrist@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fabio",
                      family = "Sigrist",
                      role = c("aut", "cre"),
                      email = "fabiosigrist@gmail.com"),
               person(given = c("Hans", "R."),
                      family = "Kuensch",
                      role = "aut"),
               person(given = c("Werner", "A."),
                      family = "Stahel",
                      role = "aut"))
as necessary.
Maintainer: ‘Rounak Dey <deyrnk@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rounak",
                      family = "Dey",
                      role = c("aut", "cre"),
                      email = "deyrnk@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_functional_process.R’
Maintainer: ‘Tuomas Rajala <tuomas.rajala@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tuomas",
                    family = "Rajala",
                    role = c("aut", "cre"),
                    email = "tuomas.rajala@iki.fi")
as necessary.
Maintainer: ‘David Clifford <david.clifford+CRAN@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Clifford",
                    role = c("aut", "cre"),
                    email = "david.clifford+CRAN@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dnnModel.R’ ‘interGradientsDL.R’ ‘loadData.R’ ‘spatialClustering.R’
Found the following HTML validation problems:
cell.names.html:55:1 (cell.names.Rd:20): Warning: missing </ul> before </div>
cell.types.html:55:1 (cell.types.Rd:20): Warning: missing </ul> before </div>
deconv.spots.html:61:1 (deconv.spots.Rd:24): Warning: missing </ul> before </div>
features.html:55:1 (features.Rd:20): Warning: missing </ul> before </div>
method.html:55:1 (method.Rd:20): Warning: missing </ul> before </div>
mixed.profiles.html:61:1 (mixed.profiles.Rd:24): Warning: missing </ul> before </div>
model.html:55:1 (model.Rd:20): Warning: missing </ul> before </div>
plots.html:55:1 (plots.Rd:20): Warning: missing </ul> before </div>
prob.cell.types.html:60:1 (prob.cell.types.Rd:23): Warning: missing </ul> before </div>
prob.matrix.html:54:1 (prob.matrix.Rd:19): Warning: missing </ul> before </div>
project.html:54:1 (project.Rd:19): Warning: missing </ul> before </div>
set.html:55:1 (set.Rd:20): Warning: missing </ul> before </div>
set.list.html:54:1 (set.list.Rd:19): Warning: missing </ul> before </div>
single.cell.real.html:55:1 (single.cell.real.Rd:20): Warning: missing </ul> before </div>
single.cell.simul.html:55:1 (single.cell.simul.Rd:20): Warning: missing </ul> before </div>
spatial.experiments.html:63:1 (spatial.experiments.Rd:26): Warning: missing </ul> before </div>
test.deconv.metrics.html:59:1 (test.deconv.metrics.Rd:22): Warning: missing </ul> before </div>
test.metrics.html:54:1 (test.metrics.Rd:19): Warning: missing </ul> before </div>
test.pred.html:54:1 (test.pred.Rd:19): Warning: missing </ul> before </div>
trained.model.html:54:1 (trained.model.Rd:19): Warning: missing </ul> before </div>
training.history.html:55:1 (training.history.Rd:20): Warning: missing </ul> before </div>
zinb.params.html:55:1 (zinb.params.Rd:20): Warning: missing </ul> before </div>
zinbwave.model.html:55:1 (zinbwave.model.Rd:20): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  FEMdensity.Rd: basisfd
  smooth.FEM.basis.Rd: lambda2df, lambda2gcv, df2lambda
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Javier Garcia-Pintado <jgarciapintado@marum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "Garcia-Pintado",
                    role = c("aut", "cre"),
                    email = "jgarciapintado@marum.de")
as necessary.
checkRd: (-1) distSG.Rd:40: Lost braces; missing escapes or markup?
    40 |   matrix and weight matrix (plus a matrix with {eID} identifiers
       |                                                ^
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  grf.Rd: ranger
  grf.bw.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Nobin Chandra Paul<ncp375@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nobin", "Chandra"),
                    family = "Paul",
                    role = c("aut", "cre"),
                    email = "ncp375@gmail.com")
as necessary.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blas M. Benito <blasbenito@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
buffer_indices.html:62:1 (buffer_indices.Rd:20): Warning: missing </ul> before </div>
check_v.html:47:1 (check_v.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Maintainer: ‘Yili Hong <yilihong@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yili",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "yilihong@vt.edu"),
               person(given = "Li",
                      family = "Xu",
                      role = "aut"),
               person(given = "Yimeng",
                      family = "Xie",
                      role = "aut"),
               person(given = "Zhongnan",
                      family = "Jin",
                      role = "aut"))
as necessary.

The Description field contains
  al. (2018, <arXiv:1809.06418>). The package also contains the Lyme
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++14: please drop specification unless essential
Maintainer: ‘Benjamin M. Taylor <benjamin.taylor.software@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M."),
                      family = "Taylor",
                      role = c("aut", "cre"),
                      email = "benjamin.taylor.software@gmail.com"),
               person(given = c("Barry", "S.", "Rowlingson", "Additional", "contributions", "Ziyu"),
                      family = "Zheng",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
hasNext.html:46:1 (hasNext.Rd:10): Warning: missing </ul> before </div>
hasNext.iter.html:48:1 (hasNext.iter.Rd:10): Warning: missing </ul> before </div>
loop.mcmc.html:50:1 (loop.mcmc.Rd:12): Warning: missing </ul> before </div>
mcmcLoop.html:62:1 (mcmcLoop.Rd:18): Warning: missing </ul> before </div>
nextStep.html:46:1 (nextStep.Rd:10): Warning: missing </ul> before </div>
print.mcmc.html:52:1 (print.mcmc.Rd:12): Warning: missing </ul> before </div>
resetLoop.html:46:1 (resetLoop.Rd:10): Warning: missing </ul> before </div>
setTxtProgressBar2.html:58:1 (setTxtProgressBar2.Rd:16): Warning: missing </ul> before </div>
summary.mcmc.html:53:1 (summary.mcmc.Rd:12): Warning: missing </ul> before </div>
txtProgressBar2.html:84:1 (txtProgressBar2.Rd:33): Warning: missing </ul> before </div>
Found the following HTML validation problems:
sp-methods.html:64:1 (sp-methods.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Francesco Pantalone <pantalone.fra@gmail.com>’

The Description field contains
  <arXiv:1710.09116>. The implementation has been done in C++ through the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Axel",
                      family = "Gandy",
                      role = c("aut", "cre"),
                      email = "a.gandy@imperial.ac.uk"),
               person(given = c("Jan", "Terje"),
                      family = "Kvaloy.",
                      role = "aut",
                      email = "jan.t.kvaloy@uis.no"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ning Hao <nhao@math.arizona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yue", "S."),
                      family = "Niu",
                      role = "aut"),
               person(given = "Ning",
                      family = "Hao",
                      role = c("aut", "cre"),
                      email = "nhao@math.arizona.edu"),
               person(given = "Bin",
                      family = "Dong",
                      role = "aut"))
as necessary.
Maintainer: ‘Milana Gataric <m.gataric@statslab.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Milana",
                      family = "Gataric",
                      role = c("aut", "cre"),
                      email = "m.gataric@statslab.cam.ac.uk"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  T. and Samworth, R. J. (2018) <arXiv:1712.05630>. The algorithm is
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David A. Schoenfeld <dschoenfeld@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "A."),
                    family = "Schoenfeld",
                    role = c("aut", "cre"),
                    email = "dschoenfeld@mgh.harvard.edu")
as necessary.
Maintainer: ‘Ziang Zhang <aguero.zhang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "aguero.zhang@mail.utoronto.ca"),
               person(given = "Lei",
                      family = "Sun",
                      role = "aut"))
as necessary.

The Description field contains
  Accounting for Covariate Effects" <arXiv:2203.15641>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Shuichi Kawano <skawano@math.kyushu-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shuichi",
                    family = "Kawano",
                    role = c("aut", "cre"),
                    email = "skawano@math.kyushu-u.ac.jp")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘federov.R’
Found the following HTML validation problems:
extract_level_occurrence.html:54:1 (extract_level_occurrence.Rd:12): Warning: missing </ul> before </div>
extract_param_distribution.html:47:1 (extract_param_distribution.Rd:11): Warning: missing </ul> before </div>
extract_prior_distribution.html:47:1 (extract_prior_distribution.Rd:11): Warning: missing </ul> before </div>
extract_specified.html:52:1 (extract_specified.Rd:12): Warning: missing </ul> before </div>
level_balance.html:52:1 (level_balance.Rd:13): Warning: missing </ul> before </div>
make_pseudo_random.html:54:1 (make_pseudo_random.Rd:14): Warning: missing </ul> before </div>
make_scrambled_sobol.html:59:1 (make_scrambled_sobol.Rd:16): Warning: missing </ul> before </div>
make_standard_halton.html:54:1 (make_standard_halton.Rd:14): Warning: missing </ul> before </div>
make_standard_sobol.html:58:1 (make_standard_sobol.Rd:16): Warning: missing </ul> before </div>
random_design_candidate.html:66:1 (random_design_candidate.Rd:24): Warning: missing </ul> before </div>
remove_prior.html:50:1 (remove_prior.Rd:12): Warning: missing </ul> before </div>
remove_square_brackets.html:46:1 (remove_square_brackets.Rd:10): Warning: missing </ul> before </div>
rsc.html:105:1 (rsc.Rd:50): Warning: missing </ul> before </div>
shuffle.html:46:1 (shuffle.Rd:10): Warning: missing </ul> before </div>
transform_lognormal.html:54:1 (transform_lognormal.Rd:14): Warning: missing </ul> before </div>
transform_normal.html:54:1 (transform_normal.Rd:14): Warning: missing </ul> before </div>
transform_triangular.html:54:1 (transform_triangular.Rd:14): Warning: missing </ul> before </div>
transform_uniform.html:54:1 (transform_uniform.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Rasheed AM <a.rasheed@qut.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rasheed",
                      family = "AM",
                      role = c("aut", "cre"),
                      email = "a.rasheed@qut.edu.au"),
               person(given = "Egodawatta",
                      family = "P",
                      role = "aut"),
               person(given = "Goonetilleke",
                      family = "A",
                      role = "aut"),
               person(given = "McGree",
                      family = "J",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexios Ghalanos <alexios@4dscape.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexios",
                    family = "Ghalanos",
                    role = c("aut", "cre"),
                    email = "alexios@4dscape.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
attempt_date.html:50:1 (attempt_date.Rd:12): Warning: missing </ul> before </div>
hazard.html:66:1 (hazard.Rd:20): Warning: missing </ul> before </div>
loglog.html:62:1 (loglog.Rd:18): Warning: missing </ul> before </div>
loglog_lnl.html:54:1 (loglog_lnl.Rd:14): Warning: missing </ul> before </div>
sploglog.html:62:1 (sploglog.Rd:18): Warning: missing </ul> before </div>
sploglog_lnl.html:58:1 (sploglog_lnl.Rd:16): Warning: missing </ul> before </div>
spweib_lnl.html:58:1 (spweib_lnl.Rd:16): Warning: missing </ul> before </div>
spweibull.html:62:1 (spweibull.Rd:18): Warning: missing </ul> before </div>
weib_lnl.html:54:1 (weib_lnl.Rd:14): Warning: missing </ul> before </div>
weibull.html:62:1 (weibull.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Martinez-Lopez",
                      role = c("aut", "cre"),
                      email = "javi.martinez.lopez@gmail.com"),
               person(given = "Babak",
                      family = "Naimi",
                      role = "aut",
                      email = "naimi.b@gmail.com"),
               person(given = "Julia",
                      family = "Martinez-Fernandez",
                      role = "aut",
                      email = "juliamf@um.es"))
as necessary.
Maintainer: ‘Charlie Beirnaert <charlie_beirnaert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlie",
                      family = "Beirnaert",
                      role = c("aut", "cre"),
                      email = "charlie_beirnaert@icloud.com"),
               person(given = c("Trung", "Nghia"),
                      family = "Vu",
                      role = "aut"),
               person(given = "Pieter",
                      family = "Meysman",
                      role = "aut"),
               person(given = "Kris",
                      family = "Laukens",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Valkenborg",
                      role = "aut"))
as necessary.
checkRd: (-1) findRef.Rd:39: Lost braces
    39 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
checkRd: (-1) hClustAlign.Rd:70: Lost braces
    70 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
Maintainer: ‘Denis Rastegaev <drastega@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denis",
                    family = "Rastegaev",
                    role = c("aut", "cre"),
                    email = "drastega@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Roadmap of specklestar package
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Found the following HTML validation problems:
as.vector.spec.html:51:1 (as.vector.spec.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) FitAkdParameters.Rd:23: Lost braces; missing escapes or markup?
    23 |       p(y|ens) = 1 / K * sum {dnorm(y, z.i, s)} \cr
       |                              ^
Maintainer: ‘Chris Paciorek <paciorek@alumni.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Paciorek",
                    role = c("aut", "cre"),
                    email = "paciorek@alumni.cmu.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
Maintainer: ‘Martin Seilmayer <martin.seilmayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "martin.seilmayer@gmail.com")
as necessary.
Found the following HTML validation problems:
lmb.html:55:1 (lmb.Rd:14): Warning: missing </ul> before </div>
onDetach.html:46:1 (onDetach.Rd:10): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Johannes Zauner [aut, cre, cph] (<https://orcid.org/0000-0003-2171-4566>), LiTG [fnd, cph] (www.litg.de)’
  Authors@R: ‘Johannes Zauner [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-2171-4566>), LiTG [fnd, cph] (URL: www.litg.de)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘analysis_age.R’ ‘analysis_alpha.R’ ‘analysis_helpers.R’
    ‘analysis_helpers_table.R’ ‘analysis_photo.R’ ‘analysis_radio.R’
    ‘analysis_setup.R’ ‘export_Output_Settings.R’ ‘export_download.R’
    ‘export_helpers.R’ ‘export_helpers_plot.R’ ‘export_helpers_table.R’
    ‘import_examples.R’ ‘import_examples_box.R’
Specified C++11: please drop specification unless essential
Maintainer: ‘Christopher R John <chris.r.john86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christopher", "R"),
                      family = "John",
                      role = c("aut", "cre"),
                      email = "chris.r.john86@gmail.com"),
               person(given = "David",
                      family = "Watson",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘innprod.R’ ‘utils.R’
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Castor", "Guisande"),
                    family = "Gonzalez",
                    role = c("aut", "cre"),
                    email = "castor@uvigo.es")
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = c("Elizabeth", "A."),
                      family = "Thompson",
                      role = "aut",
                      email = "eathomp@u.washington.edu"))
as necessary.
checkRd: (-1) speech_recompiler.Rd:25: Lost braces; missing escapes or markup?
    25 | The default compilation is that of \ code {speech_build (., compiler = TRUE}).
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_qiime2_tax_table.R’ ‘import_sintax_tax_table.R’
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michal",
                      family = "Juraska",
                      role = c("aut", "cre"),
                      email = "mjuraska@fredhutch.org"),
               person(given = c("with", "contributions", "from", "Peter", "B."),
                      family = "Gilbert",
                      role = "aut",
                      email = "pgilbert@scharp.org"),
               person(given = "Xiaomin",
                      family = "Lu",
                      role = "aut",
                      email = "xlu2@phhp.ufl.edu"),
               person(given = "Min",
                      family = "Zhang",
                      role = "aut",
                      email = "mzhangst@umich.edu"),
               person(given = "Marie",
                      family = "Davidian",
                      role = "aut",
                      email = "davidian@stat.ncsu.edu"),
               person(given = c("Anastasios", "A."),
                      family = "Tsiatis",
                      role = "aut",
                      email = "tsiatis@stat.ncsu.edu"))
as necessary.
Maintainer: ‘Selva Prabhakaran <selva86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Selva",
                    family = "Prabhakaran",
                    role = c("aut", "cre"),
                    email = "selva86@gmail.com")
as necessary.
Found the following files/directories:
  ‘.neig’
Maintainer: ‘Maximilian Lange <maximilian-lange@t-online.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = c("aut", "cre"),
                      email = "maximilian-lange@t-online.de"),
               person(given = "Sven",
                      family = "Lautenbach",
                      role = "aut"),
               person(given = "Claudia",
                      family = "Raedig",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Brenning <alexander.brenning@uni-jena.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
represampling_kmeans_bootstrap.html:93:1 (represampling_kmeans_bootstrap.Rd:41): Warning: missing </ul> before </div>
represampling_tile_bootstrap.html:88:1 (represampling_tile_bootstrap.Rd:38): Warning: missing </ul> before </div>
Found the following HTML validation problems:
extent.html:52:1 (extent.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yang Liu <yliu87@umd.edu>’

The Description field contains
  <arXiv:2303.10079>. Both the conditional densities of observed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
fosr_vs.html:63:1 (fosr_vs.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Xingche Guo <xguo@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xingche",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "xguo@iastate.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spFW.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) cylinder.counts.Rd:61-62: Lost braces
    61 | nucleotide, so that \code{a.c} represents the set {\code{aac}, \code{acc}, 
       |                                                   ^
Maintainer: ‘Yijun Xie <yijun.xie@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijun",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "yijun.xie@uwaterloo.ca")
as necessary.
Maintainer: ‘Jongmin Lee <jongminlee9218@gmail.com>’

The Description field contains
  H.-S. (2020) <arXiv:2003.02578>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Maintainer: ‘John P. Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "P."),
                      family = "Nolan",
                      role = c("aut", "cre"),
                      email = "jpnolan@american.edu"),
               person(given = "American",
                      family = "University",
                      role = "aut"))
as necessary.
checkRd: (-1) adaptIntegrateSpherePolar.Rd:14: Lost braces
    14 | code{adaptIntegrateBallPolar()} will likely miss these abrupt changes and give
       |     ^
Found the following HTML validation problems:
utils.html:54:1 (utils.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Bob Rudis <bob@rud.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bob",
                      family = "Rudis",
                      role = c("aut", "cre"),
                      email = "bob@rud.is",
                      comment = "bob@rud.is"),
               person(family = "SEOmoz"),
               person(family = "Inc",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
print.robxp.html:51:1 (print.robxp.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Iván Ayala-Bizarro <ivan.ayala@unh.edu.pe>’

The Description field contains
  http://drought.unl.edu/monitoringtools/downloadablespiprogram.aspx.
Please enclose URLs in angle brackets (<...>).
Found the following files/directories:
  ‘AlphaGA_3.txt’ ‘AlphaML_3.txt’ ‘BetaGA_3.txt’ ‘BetaML_3.txt’
  ‘Performance_GA_ML_ 3 .pdf’ ‘SPIGA_3Pmon.Pm_St1.pdf’
  ‘SPIGA_3Pmon.Pm_St2.pdf’ ‘SPI_AG_3.txt’ ‘SPI_ML_3.txt’
  ‘SPI_ML_3Pm_St1.pdf’ ‘SPI_ML_3Pm_St2.pdf’ ‘SPI_ML_3Pm_St3.pdf’
  ‘SPI_ML_3Pm_St4.pdf’ ‘SPI_PARAM_3.txt’ ‘SPI_PARAM_3Pm_St1.pdf’
  ‘SPI_PARAM_3Pm_St2.pdf’ ‘SPI_PARAM_3Pm_St3.pdf’
  ‘SPI_PARAM_3Pm_St4.pdf’
Maintainer: ‘Udaya B. Kogalur <ubk@kogalur.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hemant",
                      family = "Ishwaran",
                      role = "aut",
                      email = "hemant.ishwaran@gmail.com"),
               person(given = c("Udaya", "B."),
                      family = "Kogalur",
                      role = "cre",
                      email = "ubk@kogalur.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arturas Rozenas <ar199@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arturas",
                    family = "Rozenas",
                    role = c("aut", "cre"),
                    email = "ar199@nyu.edu")
as necessary.
Found the following HTML validation problems:
confInt.html:52:1 (confInt.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Jilber Urbina <JilberUrbina@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jilber",
                    family = "Urbina",
                    role = c("aut", "cre"),
                    email = "jilberurbina@gmail.com")
as necessary.
Maintainer: ‘Johannes W. Dietrich <johannes.dietrich@ruhr-uni-bochum.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Sam Levin <levisc8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gudrun",
                      family = "Carl",
                      role = c("cre", "aut")),
               person(given = "Ingolf",
                      family = "Kuehn",
                      role = "aut"),
               person(given = "Sam",
                      family = "Levin",
                      role = c("aut", "cre"),
                      email = "levisc8@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
step_fraction.html:50:1 (step_fraction.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
devMessage.html:46:1 (devMessage.Rd:10): Warning: missing </ul> before </div>
scale_colour_discrete.html:48:1 (scale_colour_discrete.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Julien Chiquet <julien.chiquet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Julien",
                      family = "Chiquet",
                      role = c("aut", "cre"),
                      email = "julien.chiquet@gmail.com"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"),
               person(given = "Pierre-Alexandre",
                      family = "Mattei",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘spinyReg.Rd’:
    \keyword{models,}
Found the following HTML validation problems:
spiro_import.html:62:1 (spiro_import.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:84:1 (inst/NEWS.Rd:31): Warning: missing </ul> before </div>
NEWS.html:40:1 (inst/NEWS.Rd:14): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:58:1 (inst/NEWS.Rd:23): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Melantha Wang <wang.melantha@gmail.com>’

The Description field contains
  Cost Experience Simulator" <arXiv:2109.04058>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
individual_spline.html:79:1 (individual_spline.Rd:27): Warning: missing </ul> before </div>
nodePlot.html:52:1 (nodePlot.Rd:12): Warning: missing </ul> before </div>
rpartco.html:51:1 (rpartco.Rd:12): Warning: missing </ul> before </div>
splineTreePlot.html:51:1 (splineTreePlot.Rd:12): Warning: missing </ul> before </div>
splineforest_split.html:63:1 (splineforest_split.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.splinets-methods.html:48:1 (is.splinets-methods.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
Maintainer: ‘Sam Parsons <sam.parsons@radboudumc.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/sdparsons/splithalf
which should likely be
  https://github.com/sdparsons/splithalf/issues
instead.
checkRd: (-1) speedtestdata.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:23: Lost braces in \itemize; meant \describe ?
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/SPlit.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.

The Description field contains
  Christidis, Van Aelst and Zamar (2019) <arXiv:1812.05678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ananda Mahto <mrdwab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ananda",
                    family = "Mahto",
                    role = c("aut", "cre"),
                    email = "mrdwab@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Feature Changes
File ‘splusTimeDate/libs/splusTimeDate.so’:
  Found non-API calls to R: ‘Rf_acopy_string’, ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘addlearn_local.R’
Maintainer: ‘Romin Ebrahimi <romin.ebrahimi@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Romin",
                    family = "Ebrahimi",
                    role = c("aut", "cre"),
                    email = "romin.ebrahimi@utexas.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spnn.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
checkRd: (-1) spnn-package.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:18: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.idigbio.Rd: idig_search_records
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
as.ecoengine-defunct.html:46:1 (as.ecoengine-defunct.Rd:10): Warning: missing </ul> before </div>
fixnames-defunct.html:46:1 (fixnames-defunct.Rd:10): Warning: missing </ul> before </div>
obis_search.html:123:1 (obis_search.Rd:59): Warning: missing </ul> before </div>
occ_coverage.html:52:1 (occ_coverage.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Found the following HTML validation problems:
average_color.html:46:1 (average_color.Rd:11): Warning: missing </ul> before </div>
folder_average_color.html:46:1 (folder_average_color.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Found the following HTML validation problems:
plot.rating.html:60:1 (plot.rating.Rd:17): Warning: missing </ul> before </div>
rating_run.html:163:1 (rating_run.Rd:94): Warning: missing </ul> before </div>
Maintainer: ‘Feiyu Yue <yuefyopals@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihao",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Feiyu",
                      family = "Yue",
                      role = c("aut", "cre"),
                      email = "yuefyopals@gmail.com"))
as necessary.
Maintainer: ‘Lennard van Wanrooij <lennardvanwanrooij@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lennard",
                    family = "van Wanrooij",
                    role = c("aut", "cre"),
                    email = "lennardvanwanrooij@gmail.com")
as necessary.
Maintainer: ‘Ming Wang <willnju@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "willnju@gmail.com"),
               person(given = "Yongtao",
                      family = "Guan",
                      role = "aut"),
               person(given = "Kun",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Nobin Chandra Paul<nobin.niasm@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nobin", "Chandra"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "nobin.niasm@outlook.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = "Ankur",
                      family = "Biswas",
                      role = "aut"),
               person(given = "Tauqueer",
                      family = "Ahmad",
                      role = "aut"),
               person(given = c("Prachi", "Misra"),
                      family = "Sahoo",
                      role = "aut"))
as necessary.
Maintainer: ‘DongHyuk Lee <leedhyuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "DongHyuk",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "leedhyuk@gmail.com"),
               person(given = "Samiran",
                      family = "Sinha",
                      role = "aut"))
as necessary.
Maintainer: ‘Fei Zhou <fei.zhou@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fei",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "fei.zhou@outlook.com"),
               person(given = "Yuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xi",
                      family = "Lu",
                      role = "aut"),
               person(given = "Jie",
                      family = "Ren",
                      role = "aut"),
               person(given = "Cen",
                      family = "Wu",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
reformat.html:54:1 (reformat.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Adrienne M. Wootten <amwootte@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adrienne", "M."),
                    family = "Wootten",
                    role = c("aut", "cre"),
                    email = "amwootte@ou.edu",
                    comment = "University of Oklahoma")
as necessary.
Maintainer: ‘Guo Yu <gy63@uw.edu>’

The Description field contains
  <arXiv:1907.08414>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sprintr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
addLoader.html:178:1 (addLoader.Rd:254): Warning: <h6> anchor "Methods" already defined
addLoader.html:241:1 (addLoader.Rd:296): Warning: <h5> anchor "Usage" already defined
addLoader.html:247:1 (addLoader.Rd:300): Warning: <h5> anchor "Arguments" already defined
addLoader.html:261:1 (addLoader.Rd:308): Warning: <h5> anchor "Details" already defined
addLoader.html:281:1 (addLoader.Rd:321): Warning: <h5> anchor "Usage" already defined
addLoader.html:287:1 (addLoader.Rd:325): Warning: <h5> anchor "Arguments" already defined
addLoader.html:311:1 (addLoader.Rd:339): Warning: <h5> anchor "Usage" already defined
addLoader.html:317:1 (addLoader.Rd:343): Warning: <h5> anchor "Arguments" already defined
addLoader.html:331:1 (addLoader.Rd:351): Warning: <h5> anchor "Details" already defined
addLoader.html:348:1 (addLoader.Rd:361): Warning: <h5> anchor "Usage" already defined
addLoader.html:369:1 (addLoader.Rd:380): Warning: <h5> anchor "Arguments" already defined
addLoader.html:424:1 (addLoader.Rd:429): Warning: <h5> anchor "Details" already defined
addLoader.html:445:1 (addLoader.Rd:443): Warning: <h5> anchor "Usage" already defined
addLoader.html:451:1 (addLoader.Rd:447): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Lauren Grant <pacele@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lauren",
                      family = "Grant",
                      role = c("aut", "cre"),
                      email = "pacele@vcu.edu"),
               person(given = "David",
                      family = "Wheeler",
                      role = "aut"))
as necessary.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.
Maintainer: ‘Renato Panaro <renatovp@ime.usp.br>’

The Description field contains
  right-censored data. RV Panaro (2020) <arXiv:2003.10548>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Renato Panaro [aut, cre] (<https://orcid.org/0000-0002-1903-2091>, https://rvpanaro.github.io/), Fábio Demarqui [aut] (<https://orcid.org/0000-0001-9236-1986>), Vinícius Mayrink [aut] (<https://orcid.org/0000-0002-5683-8326>)’
  Authors@R: ‘Renato Panaro [aut, cre] (ORCID: <https://orcid.org/0000-0002-1903-2091>, URL: https://rvpanaro.github.io/), Fábio Demarqui [aut] (ORCID: <https://orcid.org/0000-0001-9236-1986>), Vinícius Mayrink [aut] (ORCID: <https://orcid.org/0000-0002-5683-8326>)’
Found the following HTML validation problems:
historyStack.html:137:1 (historyStack.Rd:98): Warning: <h5> anchor "Usage" already defined
historyStack.html:153:1 (historyStack.Rd:108): Warning: <h5> anchor "Usage" already defined
historyStack.html:159:1 (historyStack.Rd:112): Warning: <h5> anchor "Arguments" already defined
historyStack.html:183:1 (historyStack.Rd:126): Warning: <h5> anchor "Usage" already defined
historyStack.html:199:1 (historyStack.Rd:136): Warning: <h5> anchor "Usage" already defined
historyStack.html:226:1 (historyStack.Rd:153): Warning: <h5> anchor "Usage" already defined
historyStack.html:243:1 (historyStack.Rd:164): Warning: <h5> anchor "Usage" already defined
historyStack.html:259:1 (historyStack.Rd:174): Warning: <h5> anchor "Usage" already defined
historyStack.html:265:1 (historyStack.Rd:178): Warning: <h5> anchor "Arguments" already defined
historyStack.html:300:1 (historyStack.Rd:200): Warning: <h5> anchor "Usage" already defined
historyStack.html:306:1 (historyStack.Rd:204): Warning: <h5> anchor "Arguments" already defined
simepleStack.html:108:1 (simepleStack.Rd:77): Warning: <h5> anchor "Usage" already defined
simepleStack.html:124:1 (simepleStack.Rd:87): Warning: <h5> anchor "Usage" already defined
simepleStack.html:140:1 (simepleStack.Rd:97): Warning: <h5> anchor "Usage" already defined
simepleStack.html:156:1 (simepleStack.Rd:107): Warning: <h5> anchor "Usage" already defined
simepleStack.html:162:1 (simepleStack.Rd:111): Warning: <h5> anchor "Arguments" already defined
simepleStack.html:188:1 (simepleStack.Rd:127): Warning: <h5> anchor "Usage" already defined
simepleStack.html:194:1 (simepleStack.Rd:131): Warning: <h5> anchor "Arguments" already defined
simepleStack.html:220:1 (simepleStack.Rd:147): Warning: <h5> anchor "Usage" already defined
simepleStack.html:226:1 (simepleStack.Rd:151): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Matthew E. Aiello-Lammens <matt.lammens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'library' or 'require' calls not declared from:
  ‘MBA’ ‘akima’ ‘colorspace’ ‘fields’ ‘maps’
Maintainer: ‘G. Grothendieck <ggrothendieck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Grothendieck",
                    role = c("aut", "cre"),
                    email = "ggrothendieck@gmail.com")
as necessary.
checkRd: (-1) sqldf.Rd:248: Lost braces
   248 | and code{port} arguments of sqldf.
       |         ^
Maintainer: ‘Wilson Freitas <wilson.freitas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilson",
                    family = "Freitas",
                    role = c("aut", "cre"),
                    email = "wilson.freitas@gmail.com")
as necessary.
Maintainer: ‘Fernando Puente-Sánchez <fernando.puente.sanchez@slu.se>’

Found the following (possibly) invalid URLs:
  URL: http://eggnogdb.embl.de/#/app/results?seqid=P0A7G6&target_nogs=COG0468#COG0468_datamenu
    From: man/RecA.Rd
    Message: Invalid URL: '#' not allowed in fragment
Found the following HTML validation problems:
exportBins.html:50:1 (exportBins.Rd:12): Warning: missing </ul> before </div>
exportContigs.html:50:1 (exportContigs.Rd:12): Warning: missing </ul> before </div>
exportORFs.html:50:1 (exportORFs.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Martin Aryee <martin.aryee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhijin",
                      family = "Wu",
                      role = "aut",
                      comment = "Jean"),
               person(given = "Martin",
                      family = "Aryee",
                      role = c("aut", "cre"),
                      email = "martin.aryee@gmail.com"))
as necessary.
Maintainer: ‘Mike Lee <random.deviate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mike",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "random.deviate@gmail.com")
as necessary.
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Varadhan",
                    role = c("aut", "cre"),
                    email = "ravi.varadhan@jhu.edu")
as necessary.
checkRd: (-1) fpiter.Rd:55-58: Lost braces
    55 |     \code{tol}{ - a small, positive scalar that determines when iterations 
       |               ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
    60 |     \code{maxiter}{ - an integer denoting the maximum limit on the number of 
       |                   ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
    63 |     \code{trace}{ - a logical variable denoting whether some of the intermediate 
       |                 ^
checkRd: (-1) fpiter.Rd:67-70: Lost braces
    67 |     \code{intermed}}{ - a logical variable denoting whether the intermediate 
       |                     ^
checkRd: (-1) squarem.Rd:134: Lost braces
   134 |       along with the corresponding log-likelihood value.  When the code{objfn} is not specified it will return the fixed-point residual instead of the objective function values. 
       |                                                                        ^
'library' or 'require' call not declared from: ‘interval’
Found the following HTML validation problems:
internal.html:64:1 (internal.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Aron C. Eklund <aroneklund@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aron", "C."),
                    family = "Eklund",
                    role = c("aut", "cre"),
                    email = "aroneklund@gmail.com")
as necessary.
checkRd: (-1) squidR.Rd:83: Lost braces; missing escapes or markup?
    83 |   \item \code{X1_sto_shared} (default \code{TRUE}): {logical}; if \code{TRUE}, the stochastic environmental effect included in the environmental effect x1 will be shared between individuals. If \code{FALSE}, each individual will experience a different stochastic environmental effect x1 (i.e. a new stochastic environmental effect is generated for each individual).
       |                                                     ^
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Le Rouzic",
                    role = c("aut", "cre"),
                    email = "arnaud.le-rouzic@universite-paris-saclay.fr")
as necessary.
Found the following HTML validation problems:
params.html:104:1 (params.Rd:41): Warning: missing </ul> before </div>
Maintainer: ‘Pablo J. Villacorta <pjvi@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pablo", "J."),
                    family = "Villacorta",
                    role = c("aut", "cre"),
                    email = "pjvi@decsai.ugr.es")
as necessary.
checkRd: (-1) plot.SRCS.Rd:48-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:56-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:61-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:74-75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:77-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:87-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:143-144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:146-148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:149: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Attila Csala <a@csala.me>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sRDA.Rd’:
    https://doi.org/10.1093/bioinformatics/btx374
Maintainer: ‘Harriet Jane Goers <hgoers@umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Harriet", "Jane"),
                    family = "Goers",
                    role = c("aut", "cre"),
                    email = "hgoers@umd.edu")
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steffen",
                      family = "Nestler",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
get_descriptions.html:59:1 (get_descriptions.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Lukas Beule <lukas.beule@julius-kuehn.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
as_tibble.html:40:1 (as_tibble.Rd:7): Warning: missing </ul> before </div>
srvyr-se-deprecated.html:204:1 (srvyr-se-deprecated.Rd:134): Warning: missing </ul> before </div>
svychisq.html:52:1 (svychisq.Rd:13): Warning: missing </ul> before </div>
tbl_vars.html:40:1 (tbl_vars.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Kelli F. Johnson <kelli.johnson@noaa.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
check_data.html:46:1 (check_data.Rd:10): Warning: missing </ul> before </div>
check_data_str_range.html:52:1 (check_data_str_range.Rd:13): Warning: missing </ul> before </div>
get_args.html:48:1 (get_args.Rd:11): Warning: missing </ul> before </div>
get_bin_info.html:47:1 (get_bin_info.Rd:10): Warning: missing </ul> before </div>
get_caseval.html:51:1 (get_caseval.Rd:13): Warning: missing </ul> before </div>
get_ss_ver_dl.html:49:1 (get_ss_ver_dl.Rd:12): Warning: missing </ul> before </div>
get_ss_ver_file.html:47:1 (get_ss_ver_file.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) ssaBSS-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:26: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
crossMerge.html:58:1 (crossMerge.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Yang Liu <zjubioly@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "zjubioly@gmail.com"),
               person(given = "Francesca",
                      family = "Chiaromonte",
                      role = "aut"),
               person(given = "Bing",
                      family = "Li",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
geom_ssd.html:179:1 (geom_ssd.Rd:106): Warning: missing </ul> before </div>
params.html:655:1 (params.Rd:331): Warning: missing </ul> before </div>
pgompertz.html:63:1 (pgompertz.Rd:19): Warning: missing </ul> before </div>
plgumbel.html:63:1 (plgumbel.Rd:19): Warning: missing </ul> before </div>
qgompertz.html:63:1 (qgompertz.Rd:19): Warning: missing </ul> before </div>
qlgumbel.html:63:1 (qlgumbel.Rd:19): Warning: missing </ul> before </div>
rgompertz.html:55:1 (rgompertz.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
SSEparser.html:138:1 (SSEparser.Rd:101): Warning: <h5> anchor "Usage" already defined
SSEparser.html:144:1 (SSEparser.Rd:105): Warning: <h5> anchor "Arguments" already defined
SSEparser.html:167:1 (SSEparser.Rd:118): Warning: <h5> anchor "Usage" already defined
SSEparser.html:183:1 (SSEparser.Rd:128): Warning: <h5> anchor "Usage" already defined
SSEparser.html:189:1 (SSEparser.Rd:132): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
print.ssev.html:55:1 (print.ssev.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Christiana Kartsonaki <christiana.kartsonaki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christiana",
                    family = "Kartsonaki",
                    role = c("aut", "cre"),
                    email = "christiana.kartsonaki@gmail.com")
as necessary.
Maintainer: ‘Sebastien Thonnard <sebastien.thonnard@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Thonnard",
                    role = c("aut", "cre"),
                    email = "sebastien.thonnard@icloud.com")
as necessary.
Maintainer: ‘Megan Orr <megan.orr@ndsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Megan",
                      family = "Orr",
                      role = c("aut", "cre"),
                      email = "megan.orr@ndsu.edu"),
               person(given = "Peng",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Luis Benites Sanchez <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"),
               person(given = c("Clecio", "da", "Silva"),
                      family = "Ferreira",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ssmn.html:89:1 (ssmn.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Peter Curtis <peterrobertcurtis@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) new.distance.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:30-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:38-40: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
compute.covariance.from.distance.html:64:1 (compute.covariance.from.distance.Rd:22): Warning: missing </ul> before </div>
optimize.by.interval.maximum.html:51:1 (optimize.by.interval.maximum.Rd:12): Warning: missing </ul> before </div>
show-SSM-method.html:51:1 (show-SSM-method.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Mikhail Zhelonkin <Mikhail.Zhelonkin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikhail",
                      family = "Zhelonkin",
                      role = c("aut", "cre"),
                      email = "mikhail.zhelonkin@gmail.com"),
               person(given = c("Marc", "G."),
                      family = "Genton",
                      role = "aut"),
               person(given = "Elvezio",
                      family = "Ronchetti",
                      role = "aut"))
as necessary.
Maintainer: ‘Luis Benites <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rocio",
                      family = "Maehara",
                      role = "aut"),
               person(given = "Luis",
                      family = "Benites",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"))
as necessary.
Maintainer: ‘Edgar Santos-Fernandez <santosfe@qut.edu.au>’

The Description field contains
  <arXiv:2103.03538>. In these models, spatial dependence is captured
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
print.ssrmst.html:51:1 (print.ssrmst.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
network_window.html:62:1 (network_window.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Dave Zes <zesdave@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dave",
                    family = "Zes",
                    role = c("aut", "cre"),
                    email = "zesdave@gmail.com")
as necessary.
Found the following HTML validation problems:
addQtext.html:50:1 (addQtext.Rd:12): Warning: missing </ul> before </div>
changeValues.html:50:1 (changeValues.Rd:12): Warning: missing </ul> before </div>
fast.read.fwf.html:87:1 (fast.read.fwf.Rd:38): Warning: missing </ul> before </div>
getSSScodes.html:46:1 (getSSScodes.Rd:10): Warning: missing </ul> before </div>
namesMultiple.html:54:1 (namesMultiple.Rd:14): Warning: missing </ul> before </div>
repN.html:46:1 (repN.Rd:10): Warning: missing </ul> before </div>
splitMultiple.html:54:1 (splitMultiple.Rd:14): Warning: missing </ul> before </div>
splitSSS.html:50:1 (splitSSS.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Kevin Matlock <kevin.matlock@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Matlock",
                      role = c("aut", "cre"),
                      email = "kevin.matlock@gmail.com"),
               person(given = "Raziur",
                      family = "Rahman",
                      role = "aut"))
as necessary.
Maintainer: ‘Luis Hernando Vanegas <hvanegasp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Hernando"),
                      family = "Vanegas",
                      role = c("aut", "cre"),
                      email = "hvanegasp@gmail.com"),
               person(given = c("Gilberto", "A."),
                      family = "Paula",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
boot_model.html:52:1 (boot_model.Rd:13): Warning: missing </ul> before </div>
model_enet.html:48:1 (model_enet.Rd:11): Warning: missing </ul> before </div>
model_lasso.html:48:1 (model_lasso.Rd:11): Warning: missing </ul> before </div>
model_mbic.html:48:1 (model_mbic.Rd:11): Warning: missing </ul> before </div>
model_mcp.html:48:1 (model_mcp.Rd:11): Warning: missing </ul> before </div>
permute.html:56:1 (permute.Rd:15): Warning: missing </ul> before </div>
rep_selector_boot.html:50:1 (rep_selector_boot.Rd:12): Warning: missing </ul> before </div>
rep_selector_perm.html:50:1 (rep_selector_perm.Rd:12): Warning: missing </ul> before </div>
stabiliser_prep.html:48:1 (stabiliser_prep.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Niklas Pfister <np@math.ku.dk>’

The Description field contains
  <arXiv:1911.01850>. The procedure uses averaging to estimate a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) SRanalysis.Rd:100: Lost braces
   100 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
checkRd: (-1) StabilizedRegression.Rd:109: Lost braces
   109 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
Found the following HTML validation problems:
linear_regressor.html:143:1 (linear_regressor.Rd:85): Warning: <h5> anchor "Usage" already defined
linear_regressor.html:149:1 (linear_regressor.Rd:89): Warning: <h5> anchor "Arguments" already defined
linear_regressor.html:168:1 (linear_regressor.Rd:102): Warning: <h5> anchor "Returns" already defined
linear_regressor.html:185:1 (linear_regressor.Rd:111): Warning: <h5> anchor "Usage" already defined
linear_regressor.html:191:1 (linear_regressor.Rd:115): Warning: <h5> anchor "Arguments" already defined
linear_regressor.html:204:1 (linear_regressor.Rd:122): Warning: <h5> anchor "Returns" already defined
linear_regressor.html:221:1 (linear_regressor.Rd:131): Warning: <h5> anchor "Usage" already defined
linear_regressor.html:227:1 (linear_regressor.Rd:135): Warning: <h5> anchor "Arguments" already defined
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
Links.html:60:1 (Links.Rd:32): Warning: missing </ul> before </div>
Found the following HTML validation problems:
adjustedDocumentation.html:50:1 (adjustedDocumentation.Rd:17): Warning: missing </ul> before </div>
correctedDocumentation.html:41:1 (correctedDocumentation.Rd:8): Warning: missing </ul> before </div>
uncorrectedDocumentation.html:60:1 (uncorrectedDocumentation.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Benjamin Hofner <benjamin.hofner@pei.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:64:1 (inst/NEWS.Rd:25): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:83:1 (inst/NEWS.Rd:35): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:107:1 (inst/NEWS.Rd:46): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:125:1 (inst/NEWS.Rd:55): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:157:1 (inst/NEWS.Rd:75): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:189:1 (inst/NEWS.Rd:91): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:225:1 (inst/NEWS.Rd:110): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:245:1 (inst/NEWS.Rd:121): Warning: <h4> anchor "User-visible-changes" already defined
NEWS.html:283:1 (inst/NEWS.Rd:141): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:308:1 (inst/NEWS.Rd:153): Warning: <h4> anchor "Bug-fixes" already defined
checkRd: (-1) stabsel_parameters.Rd:42: Lost braces
    42 |     always use code{"none"}.}
       |                    ^
checkRd: (-1) stabsel_stabsel.Rd:25: Lost braces
    25 |     always use code{"none"}.}
       |                    ^
Maintainer: ‘Mike Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  stacking” <arXiv:2101.07954>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) stackExample.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stackExample.Rd:11: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
predict.data_stack.html:52:1 (predict.data_stack.Rd:12): Warning: missing </ul> before </div>
Error(s) in re-building vignettes:
  ...
--- re-building ‘stacomir.Rmd’ using rmarkdown

Quitting from stacomir.Rmd:349-366 [silver]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'MASS'
---
Backtrace:
    ▆
 1. ├─base::plot(r_silver, plot.type = "3")
 2. ├─stacomiR::plot(r_silver, plot.type = "3")
 3. │ └─stacomiR (local) .local(x, ...)
 4. └─base::loadNamespace(x)
 5.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.     └─base (local) withOneRestart(expr, restarts[[1L]])
 7.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'stacomir.Rmd' failed with diagnostics:
there is no package called 'MASS'
--- failed re-building ‘stacomir.Rmd’

SUMMARY: processing the following file failed:
  ‘stacomir.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
end_date.html:50:1 (end_date.Rd:12): Warning: missing </ul> before </div>
get_year.html:50:1 (get_year.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
connect.html:50:1 (connect.Rd:13): Warning: missing </ul> before </div>
getquery.html:50:1 (getquery.Rd:12): Warning: missing </ul> before </div>
query.html:50:1 (query.Rd:13): Warning: missing </ul> before </div>
validity_DB.html:46:1 (validity_DB.Rd:10): Warning: missing </ul> before </div>
validity_ODBC.html:46:1 (validity_ODBC.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Gherardo Varando <gherardo.varando@gmail.com>’

The Description field contains
  Smith J. Q. (2018) <arXiv:1705.09457>.  Thwaites P. A., Smith, J. Q.
  (2017) <arXiv:1510.00186>.  Barclay L. M., Hutton J. L. and Smith J. Q.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
edge.html:66:1 (edge.Rd:20): Warning: missing </ul> before </div>
node.html:66:1 (node.Rd:20): Warning: missing </ul> before </div>
text.sevt.html:67:1 (text.sevt.Rd:20): Warning: missing </ul> before </div>
tree_string.html:46:1 (tree_string.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘David Nutter <david.nutter@bioss.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Helen",
                      family = "Kettle",
                      role = "aut"),
               person(given = "David",
                      family = "Nutter",
                      role = "cre",
                      email = "david.nutter@bioss.ac.uk"))
as necessary.
Found the following HTML validation problems:
runStagePopExample.html:47:1 (runStagePopExample.Rd:10): Warning: missing </ul> before </div>
sumStrains.html:83:1 (sumStrains.Rd:33): Warning: missing </ul> before </div>
Maintainer: ‘LW Pembleton <lwpembleton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "LW",
                    family = "Pembleton",
                    role = c("aut", "cre"),
                    email = "lwpembleton@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) stamppFst.Rd:20: Lost braces
    20 | \code{Fsts}{a matrix of pairwise Fst values between populations}
       |            ^
checkRd: (-1) stamppFst.Rd:21: Lost braces
    21 | \code{Pvalues}{a matrix of p-values for each of the pairwise Fst values containined in the 'Fsts' matrix}
       |               ^
checkRd: (-1) stamppFst.Rd:22: Lost braces
    22 | \code{Bootstraps}{a dataframe of each Fst value generated during Bootstrapping and the associated confidence intervals}
       |                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stamp.direction.r’
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:41:1 (inst/NEWS.Rd:13): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:75:1 (inst/NEWS.Rd:31): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:90:1 (inst/NEWS.Rd:38): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Christopher D. Eager <eager.stats@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) standardize.Rd:94: Lost braces; missing escapes or markup?
    94 | take on values {-0.5, 0, 0.5} rather than {-1, 0, 1}, the standard deviation
       |                ^
checkRd: (-1) standardize.Rd:94: Lost braces; missing escapes or markup?
    94 | take on values {-0.5, 0, 0.5} rather than {-1, 0, 1}, the standard deviation
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘E. P. Adams <eric.adams@orau.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "L."),
                      family = "Frome",
                      role = "aut",
                      email = "fromeEL@ornl.gov"),
               person(given = c("D.", "P."),
                      family = "Frome",
                      role = "aut"),
               person(given = c("E.", "P."),
                      family = "Adams",
                      role = "cre",
                      email = "eric.adams@orau.org"))
as necessary.
checkRd: (-1) get_fields.Rd:27: Lost braces
    27 | codes, the function will return a warning by default, suggesting setting \code{convert_field_names} to code{TRUE}.
       |                                                                                                            ^
checkRd: (-1) identify_form_fields.Rd:34: Lost braces
    34 | codes, the function will return a warning by default, suggesting setting \code{convert_field_names} to code{TRUE}.
       |                                                                                                            ^
Found the following HTML validation problems:
input_filepath.html:41:1 (input_filepath.Rd:8): Warning: missing </ul> before </div>
output_filepath.html:41:1 (output_filepath.Rd:8): Warning: missing </ul> before </div>
overwrite.html:40:1 (overwrite.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Marek Hlavac <marek.hlavac@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "marek.hlavac@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) stargazer.Rd:229: Lost braces
   229 |   \item{report}{a character string containing only elements of {\code{"v"}, \code{"c"}, \code{"s"},\code{"t"}, \code{"p"}, \code{"*"}} that determines whether, and in which order, variable names (\code{"v"}), coefficients (\code{"c"}), standard errors/confidence intervals (\code{"s"}), test statistics (\code{"t"}) and p-values (\code{"p"}) should be reported in regression tables. If one of the aforementioned letters is followed by an asterisk (\code{"*"}), significance stars will be reported next to the corresponding statistic.}
       |                                                                ^
checkRd: (-1) stargazer.Rd:246: Lost braces
   246 |   \item{table.placement}{a character string containing only elements of {\code{"h"}, \code{"t"},\code{"b"}, \code{"p"}, \code{"!"}, \code{"H"}} that determines the table placement in its LaTeX floating environment.}
       |                                                                         ^
Maintainer: ‘Felix Cheysson <felix@cheysson.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Felix",
                    family = "Cheysson",
                    role = c("aut", "cre"),
                    email = "felix@cheysson.fr")
as necessary.
Maintainer: ‘Yannis Barboni <yannis.barboni1@gmail.com>’

The Description field contains
  to local spread of plant diseases." 2019. <arXiv:1811.06782>, using a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stat_frequency.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘character_dimensions.Rd’ ‘constellation_as_multistar.Rd’
    ‘constellation_as_tibble_list.Rd’ ‘define_dimension.Rd’
    ‘define_fact.Rd’ ‘dm_mrs_age.Rd’ ‘dm_mrs_cause.Rd’
    ‘filter_dimension.Rd’ ‘filter_fact_rows.Rd’
    ‘get_conformed_dimension.Rd’ ‘get_conformed_dimension_names.Rd’
    ‘get_dimension.Rd’ ‘get_dimension_attribute_names.Rd’
    ‘get_dimension_names.Rd’ ‘get_measure_names.Rd’ ‘get_star_schema.Rd’
    ‘get_star_schema_names.Rd’ ‘incremental_refresh_constellation.Rd’
    ‘incremental_refresh_star_schema.Rd’ ‘match_records.Rd’
    ‘modify_conformed_dimension_records.Rd’ ‘modify_dimension_records.Rd’
    ‘ms_mrs.Rd’ ‘ms_mrs_test.Rd’ ‘multistar_as_flat_table.Rd’
    ‘purge_dimensions_constellation.Rd’ ‘purge_dimensions_star_schema.Rd’
    ‘rename_dimension.Rd’ ‘rename_dimension_attributes.Rd’
    ‘rename_fact.Rd’ ‘rename_measures.Rd’ ‘role_playing_dimension.Rd’
    ‘run_query.Rd’ ‘select_dimension.Rd’ ‘select_fact.Rd’ ‘snake_case.Rd’
    ‘st_mrs_age.Rd’ ‘st_mrs_age_test.Rd’ ‘st_mrs_age_w10.Rd’
    ‘st_mrs_age_w11.Rd’ ‘st_mrs_age_w_test.Rd’ ‘st_mrs_cause.Rd’
    ‘st_mrs_cause_test.Rd’ ‘st_mrs_cause_w10.Rd’ ‘st_mrs_cause_w11.Rd’
    ‘st_mrs_cause_w_test.Rd’ ‘star_schema_as_flat_table.Rd’
    ‘star_schema_as_multistar.Rd’ ‘star_schema_as_tibble_list.Rd’
    ‘update_record.Rd’ ‘update_selection.Rd’
    ‘update_selection_general.Rd’ ‘updates_st_mrs_age.Rd’
    ‘updates_st_mrs_age_test.Rd’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘prcomp.Rd’
Found the following HTML validation problems:
expand_dimensions.html:61:1 (expand_dimensions.Rd:19): Warning: missing </ul> before </div>
in-methods.html:51:1 (in-methods.Rd:13): Warning: missing </ul> before </div>
make_intervals.html:50:1 (make_intervals.Rd:12): Warning: missing </ul> before </div>
print_stars.html:88:1 (print_stars.Rd:38): Warning: missing </ul> before </div>
redimension.html:79:1 (redimension.Rd:36): Warning: missing </ul> before </div>
st_coordinates.html:73:1 (st_coordinates.Rd:28): Warning: missing </ul> before </div>
st_set_bbox.html:54:1 (st_set_bbox.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
starsTileServer.html:166:1 (starsTileServer.Rd:112): Warning: <h5> anchor "Usage" already defined
starsTileServer.html:172:1 (starsTileServer.Rd:116): Warning: <h5> anchor "Arguments" already defined
starsTileServer.html:201:1 (starsTileServer.Rd:135): Warning: <h5> anchor "Usage" already defined
starsTileServer.html:217:1 (starsTileServer.Rd:145): Warning: <h5> anchor "Usage" already defined
starsTileServer.html:233:1 (starsTileServer.Rd:155): Warning: <h5> anchor "Usage" already defined
starsTileServer.html:249:1 (starsTileServer.Rd:165): Warning: <h5> anchor "Usage" already defined
starsTileServer.html:255:1 (starsTileServer.Rd:169): Warning: <h5> anchor "Arguments" already defined
starsTileServer.html:278:1 (starsTileServer.Rd:182): Warning: <h5> anchor "Usage" already defined
starsTileServer.html:294:1 (starsTileServer.Rd:192): Warning: <h5> anchor "Usage" already defined
starsTileServer.html:300:1 (starsTileServer.Rd:196): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Haolun Shi <shl2003@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haolun",
                      family = "Shi",
                      role = c("aut", "cre"),
                      email = "shl2003@connect.hku.hk"),
               person(given = "Guosheng",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de",
                      comment = c(ORCID = "0000-0002-8226-3132")),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-9744-3059")))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
STARTS-utilities.html:63:1 (STARTS-utilities.Rd:35): Warning: missing </ul> before </div>
Found the following HTML validation problems:
warn.html:58:1 (warn.Rd:18): Warning: missing </ul> before </div>
checkRd: (-1) multiCUMSUM.Rd:33: Escaped LaTeX specials: \&
Found the following HTML validation problems:
resource_utilization_tree_node.html:69:1 (resource_utilization_tree_node.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Robin Lock <rlock@stlawu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ann",
                      family = "Cannon",
                      role = "aut"),
               person(given = "George",
                      family = "Cobb",
                      role = "aut"),
               person(given = "Bradley",
                      family = "Hartlaub",
                      role = "aut"),
               person(given = "Julie",
                      family = "Legler",
                      role = "aut"),
               person(given = "Robin",
                      family = "Lock",
                      role = c("aut", "cre"),
                      email = "rlock@stlawu.edu"),
               person(given = "Thomas",
                      family = "Moore",
                      role = "aut"),
               person(given = "Allan",
                      family = "Rossman",
                      role = "aut"),
               person(given = "Jeffrey",
                      family = "Witmer",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/statmanrobin/Stat2Data
which should likely be
  https://github.com/statmanrobin/Stat2Data/issues
instead.
checkRd: (-1) AutoPollution.Rd:16: Lost braces
    16 |     \code{Side} \tab {Side of vehicle: code{1}=right or \code{2}=left}\cr
       |                                            ^
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Found the following HTML validation problems:
pctile.html:58:1 (pctile.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) statcan_data.Rd:22: Lost braces; missing escapes or markup?
    22 | \code{statcan_data()} function has 2 arguments to fulfill to get data: {tableNumber} & {lang}.
       |                                                                        ^
checkRd: (-1) statcan_data.Rd:22: Lost braces; missing escapes or markup?
    22 | \code{statcan_data()} function has 2 arguments to fulfill to get data: {tableNumber} & {lang}.
       |                                                                                        ^
checkRd: (-1) statcan_search.Rd:18: Lost braces; missing escapes or markup?
    18 | The \code{statcan_search()} function has 2 arguments to fulfill to find a database: {keywords} and {lang}.
       |                                                                                     ^
checkRd: (-1) statcan_search.Rd:18: Lost braces; missing escapes or markup?
    18 | The \code{statcan_search()} function has 2 arguments to fulfill to find a database: {keywords} and {lang}.
       |                                                                                                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘od_list.R’ ‘od_resource.R’ ‘od_utils.R’ ‘other_endpoints.R’
    ‘sc_data.R’ ‘schema.R’ ‘schema_uri.R’ ‘sdmx_table.R’ ‘table.R’
    ‘table_as_data_frame.R’ ‘table_json.R’ ‘table_meta.R’ ‘table_saved.R’
Found the following HTML validation problems:
theme_statebins.html:50:1 (theme_statebins.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Dylan Beijers <dylanbeijers@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
dot-warner.html:50:1 (dot-warner.Rd:12): Warning: missing </ul> before </div>
index_date.html:50:1 (index_date.Rd:12): Warning: missing </ul> before </div>
state_panel_date.html:63:1 (state_panel_date.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
summary.GWAS.html:62:1 (summary.GWAS.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
createVarComp.html:64:1 (createVarComp.Rd:24): Warning: missing </ul> before </div>
stability.html:61:1 (stability.Rd:18): Warning: missing </ul> before </div>
varCov.html:69:1 (varCov.Rd:22): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.summary.QTLMPP.html:51:1 (print.summary.QTLMPP.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
updateFA.html:92:1 (updateFA.Rd:40): Warning: missing </ul> before </div>
updateFAHomVar.html:55:1 (updateFAHomVar.Rd:14): Warning: missing </ul> before </div>
updatePrec.html:83:1 (updatePrec.Rd:29): Warning: missing </ul> before </div>
Found the following possibly unsafe calls:
File ‘statnet.common/R/control.utilities.R’:
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Found the following HTML validation problems:
is.SPD.html:50:1 (is.SPD.Rd:12): Warning: missing </ul> before </div>
opttest.html:76:1 (opttest.Rd:31): Warning: missing </ul> before </div>
set_diag.html:51:1 (set_diag.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Martina Morris <morrism@uw.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Maintainer: ‘Hossein Azari Soufiani <azari.hossein@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hossein", "Azari"),
                      family = "Soufiani",
                      role = c("aut", "cre"),
                      email = "azari.hossein@gmail.com"),
               person(given = "William",
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Found the following HTML validation problems:
check_input_file.html:60:1 (check_input_file.Rd:18): Warning: missing </ul> before </div>
checkRd: (-1) sample2indp.pow.Rd:48: Lost braces
    48 | Pooled standard deviation= \code{sp} = sqrt{((n1 - 1) sigma1^2 +(n2 - 1) sigma2^2) / (n1 + n2 - 2)}
       |                                            ^
Found the following HTML validation problems:
dot-check_cast_failures.html:73:1 (dot-check_cast_failures.Rd:27): Warning: missing </ul> before </div>
dot-elements_are_cls_ish.html:46:1 (dot-elements_are_cls_ish.Rd:10): Warning: missing </ul> before </div>
dot-shared-params-check.html:40:1 (dot-shared-params-check.Rd:7): Warning: missing </ul> before </div>
dot-shared-params.html:198:1 (dot-shared-params.Rd:102): Warning: missing </ul> before </div>
dot-stbl_abort.html:79:1 (dot-stbl_abort.Rd:33): Warning: missing </ul> before </div>
Found the following HTML validation problems:
stb.html:55:1 (stb.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Brett Naul <brettnaul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brett",
                    family = "Naul",
                    role = c("aut", "cre"),
                    email = "brettnaul@gmail.com")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:134:1 (inst/NEWS.Rd:56): Warning: missing </ul> before </div>
NEWS.html:42:1 (inst/NEWS.Rd:14): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:57:1 (inst/NEWS.Rd:21): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:118:1 (inst/NEWS.Rd:50): Warning: <h4> anchor "Bug-fixes" already defined
Maintainer: ‘Marco Giuliano <mgiuliano.mail@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Giuliano",
                    role = c("aut", "cre"),
                    email = "mgiuliano.mail@gmail.com")
as necessary.
Maintainer: ‘Benjamin Risk <bbr28@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "B."),
                      family = "Risk",
                      role = "aut"),
               person(given = c("Nicholas", "A."),
                      family = "James",
                      role = "aut"),
               person(given = c("David", "S."),
                      family = "Matteson",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Risk",
                      role = "cre",
                      email = "bbr28@cornell.edu"))
as necessary.
Maintainer: ‘David Leiva <dleivaur@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Leiva", "&", "Han", "de", "Vries"),
                      family = "<J.deVries1@uu.nl>.",
                      role = "aut",
                      email = "J.deVries1@uu.nl"),
               person(given = "David",
                      family = "Leiva",
                      role = "cre",
                      email = "dleivaur@ub.edu"))
as necessary.
Maintainer: ‘Cedric E Ginestet <cedric.ginestet@kcl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Cedric", "E"),
                    family = "Ginestet",
                    role = c("aut", "cre"),
                    email = "cedric.ginestet@kcl.ac.uk")
as necessary.
Found the following HTML validation problems:
show_multivariate_hawkes.html:57:1 (show_multivariate_hawkes.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Jean-Baptiste Camps <jbcamps@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jean-Baptiste", "Camps", ";", "Florian"),
                      family = "Cafiero",
                      role = "aut"),
               person(given = "Jean-Baptiste",
                      family = "Camps",
                      role = "cre",
                      email = "jbcamps@hotmail.com"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: stemmatology-utils
    From: README.md
  URI: 10.1484/M.LECTIO-EB.5.102565
    From: README.md

Found the following URLs which should use \doi (with the DOI name only):
  File ‘PCC.Exploratory.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.Stemma.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.buildGroup.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.conflicts.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.disagreement.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.elimination.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.equipollent.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.overconflicting.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.reconstructModel.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘fournival.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘heinrichi.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘notreBesoin.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘parzival.Rd’:
    https://doi.org/10.1016/j.jtbi.2003.11.022
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘stemmatology-package.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
Found the following HTML validation problems:
Stenographer.html:141:1 (Stenographer.Rd:108): Warning: <h5> anchor "Usage" already defined
Stenographer.html:147:1 (Stenographer.Rd:112): Warning: <h5> anchor "Arguments" already defined
Stenographer.html:170:1 (Stenographer.Rd:125): Warning: <h5> anchor "Usage" already defined
Stenographer.html:176:1 (Stenographer.Rd:129): Warning: <h5> anchor "Arguments" already defined
Stenographer.html:199:1 (Stenographer.Rd:142): Warning: <h5> anchor "Usage" already defined
Stenographer.html:215:1 (Stenographer.Rd:152): Warning: <h5> anchor "Usage" already defined
Stenographer.html:221:1 (Stenographer.Rd:156): Warning: <h5> anchor "Returns" already defined
Stenographer.html:238:1 (Stenographer.Rd:165): Warning: <h5> anchor "Usage" already defined
Stenographer.html:244:1 (Stenographer.Rd:169): Warning: <h5> anchor "Arguments" already defined
Stenographer.html:271:1 (Stenographer.Rd:186): Warning: <h5> anchor "Usage" already defined
Stenographer.html:277:1 (Stenographer.Rd:190): Warning: <h5> anchor "Arguments" already defined
Stenographer.html:302:1 (Stenographer.Rd:205): Warning: <h5> anchor "Usage" already defined
Stenographer.html:308:1 (Stenographer.Rd:209): Warning: <h5> anchor "Arguments" already defined
Stenographer.html:333:1 (Stenographer.Rd:224): Warning: <h5> anchor "Usage" already defined
Stenographer.html:339:1 (Stenographer.Rd:228): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
CompScoreTable.html:330:1 (CompScoreTable.Rd:189): Warning: missing </ul> before </div>
CompScoreTable.html:126:1 (CompScoreTable.Rd:67): Warning: <h5> anchor "Usage" already defined
CompScoreTable.html:132:1 (CompScoreTable.Rd:71): Warning: <h5> anchor "Arguments" already defined
CompScoreTable.html:160:1 (CompScoreTable.Rd:89): Warning: <h5> anchor "Usage" already defined
CompScoreTable.html:170:1 (CompScoreTable.Rd:97): Warning: <h5> anchor "Arguments" already defined
CompScoreTable.html:210:1 (CompScoreTable.Rd:120): Warning: <h5> anchor "Usage" already defined
CompScoreTable.html:216:1 (CompScoreTable.Rd:124): Warning: <h5> anchor "Arguments" already defined
CompScoreTable.html:233:1 (CompScoreTable.Rd:135): Warning: <h5> anchor "Returns" already defined
CompScoreTable.html:252:1 (CompScoreTable.Rd:146): Warning: <h5> anchor "Usage" already defined
CompScoreTable.html:258:1 (CompScoreTable.Rd:150): Warning: <h5> anchor "Arguments" already defined
CompScoreTable.html:290:1 (CompScoreTable.Rd:169): Warning: <h5> anchor "Returns" already defined
CompScoreTable.html:307:1 (CompScoreTable.Rd:178): Warning: <h5> anchor "Usage" already defined
CompScoreTable.html:313:1 (CompScoreTable.Rd:182): Warning: <h5> anchor "Arguments" already defined
check_score_between.html:55:1 (check_score_between.Rd:14): Warning: missing </ul> before </div>
handle_retain.html:55:1 (handle_retain.Rd:14): Warning: missing </ul> before </div>
is_stenR_classes.html:81:1 (is_stenR_classes.Rd:44): Warning: missing </ul> before </div>
mockNAtable.html:48:1 (mockNAtable.Rd:10): Warning: missing </ul> before </div>
plot.GroupedFrequencyTable.html:77:1 (plot.GroupedFrequencyTable.Rd:31): Warning: missing </ul> before </div>
plot.GroupedScoreTable.html:82:1 (plot.GroupedScoreTable.Rd:34): Warning: missing </ul> before </div>
qualify_to_groups.html:51:1 (qualify_to_groups.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Sergio Garofalo <sergio.garofalo96@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Garofalo",
                    role = c("aut", "cre"),
                    email = "sergio.garofalo96@gmail.com")
as necessary.
Maintainer: ‘Arya Ebadi <aeba3842@uni.sydney.edu.au>’

The Description field contains
  (2020) <arXiv:2011.11939>. Such setups include target-decoy competition
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Leandro A. Pereira <leandro.ap@ufu.br>’

The Description field contains
  hypothesis test. Pinto & Pereira (2021) <arXiv:2109.07978>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Eleni Vradi <vradi.eleni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eleni",
                    family = "Vradi",
                    role = c("aut", "cre"),
                    email = "vradi.eleni@gmail.com")
as necessary.
checkRd: (-1) tuneParam.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
checkRd: (-1) tuneParamCL2.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
Maintainer: ‘Mee Young Park <meeyoung@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mee", "Young"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "meeyoung@google.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Maintainer: ‘Wai-ki Yip <yuser86@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wai-ki",
                      family = "Yip",
                      role = c("aut", "cre"),
                      email = "yuser86@yahoo.com"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "David",
                      family = "Zahrieh",
                      role = "ctb"),
               person(given = "Chip",
                      family = "Cole",
                      role = "ctb"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "Marco",
                      family = "Bonetti",
                      role = "ctb"),
               person(given = "Victoria",
                      family = "Wang",
                      role = "ctb"),
               person(given = "William",
                      family = "Barcella",
                      role = "ctb"),
               person(given = "Sergio",
                      family = "Venturini",
                      role = "ctb"))
as necessary.
Maintainer: ‘Chu-Lan Michael Kao <chulankao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chao",
                      family = "Du",
                      role = "aut"),
               person(given = c("Chu-Lan", "Michael"),
                      family = "Kao",
                      role = c("aut", "cre"),
                      email = "chulankao@gmail.com"),
               person(given = "Samuel",
                      family = "Kou",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Kendro Vincent <vincent.kendro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yu-Chin",
                      family = "Hsu",
                      role = "aut"),
               person(given = "Kendro",
                      family = "Vincent",
                      role = c("aut", "cre"),
                      email = "vincent.kendro@gmail.com"))
as necessary.
Maintainer: ‘Aaron Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = "Annat",
                      family = "Haber",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) landmarkMatrixToList.Rd:10: Lost braces
    10 |   \item{semilandmark.pattern}{a regular expression pattern passed to \code{sub()} for identifying and grouping curve points. The default is landmark names ending in one or more numbers. To disable grouping, set to code{''}.}
       |                                                                                                                                                                                                                           ^
checkRd: (-1) docker_config_collection.Rd:11: Lost braces; missing escapes or markup?
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("config")}
       | ^
checkRd: (-1) docker_container.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_container")}
       | ^
checkRd: (-1) docker_image_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("image")}
       | ^
checkRd: (-1) docker_plugin_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("plugin")}
       | ^
checkRd: (-1) docker_service_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("service")}
       | ^
checkRd: (-1) docker_task.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_task")}
       | ^
Found the following HTML validation problems:
docker_swarm_collection.html:163:1 (docker_swarm_collection.Rd:11): Warning: missing </ul> before </div>
docker_types.html:298:1 (docker_types.Rd:28): Warning: missing </ul> before </div>
Found the following HTML validation problems:
html_article.html:49:1 (html_article.Rd:13): Warning: missing </ul> before </div>
word.html:51:1 (word.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
getMask.html:51:1 (getMask.Rd:13): Warning: missing </ul> before </div>
lc_cov_1d.html:67:1 (lc_cov_1d.Rd:21): Warning: missing </ul> before </div>
lc_cov_1d_est.html:63:1 (lc_cov_1d_est.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
SymbolicMultiplication.html:52:1 (SymbolicMultiplication.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Tomas Johannesson <tj@vedur.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tomas", "Johannesson", "&", "Halldor"),
                      family = "Bjornsson",
                      role = "aut"),
               person(given = c("Icelandic", "Met.", "Office;", "Gabor"),
                      family = "Grothendieck",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Johannesson",
                      role = "cre",
                      email = "tj@vedur.is"))
as necessary.
Maintainer: ‘Dan Zangri <dzangri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zangri",
                      role = c("aut", "cre"),
                      email = "dzangri@gmail.com"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "ctb"),
               person(given = "Brandon",
                      family = "Stewart",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘stmgui-package.Rd’:
    \keyword{ stm, shiny }
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_diag.Rd’ ‘get_effects.Rd’ ‘get_network.Rd’ ‘stm_diag.R’
    ‘stm_effects.R’ ‘stm_network.R’
Maintainer: ‘Andres Villegas <andresmauriciovillegas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andres",
                      family = "Villegas",
                      role = c("aut", "cre"),
                      email = "andresmauriciovillegas@gmail.com"),
               person(given = "Pietro",
                      family = "Millossovich",
                      role = "aut",
                      email = "Pietro.Millossovich.1@city.ac.uk"),
               person(given = "Vladimir",
                      family = "Kaishev",
                      role = "aut",
                      email = "Vladimir.Kaishev.1@city.ac.uk"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: www.mortality.org
    From: man/EWMaleData.Rd
Found the following HTML validation problems:
computeDevianceBinomial.html:58:1 (computeDevianceBinomial.Rd:16): Warning: missing </ul> before </div>
computeDeviancePoisson.html:54:1 (computeDeviancePoisson.Rd:14): Warning: missing </ul> before </div>
computeLogLikBinomial.html:58:1 (computeLogLikBinomial.Rd:16): Warning: missing </ul> before </div>
computeLogLikPoisson.html:54:1 (computeLogLikPoisson.Rd:14): Warning: missing </ul> before </div>
scatterplotAPC.html:79:1 (scatterplotAPC.Rd:29): Warning: missing </ul> before </div>
simulate.iarima.html:62:1 (simulate.iarima.Rd:18): Warning: missing </ul> before </div>
simulate.mrwd.html:62:1 (simulate.mrwd.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Matthias Salvisberg <matthias.salvisberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthias",
                    family = "Salvisberg",
                    role = c("aut", "cre"),
                    email = "matthias.salvisberg@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Devin S. Johnson <devin.johnson@noaa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Devin", "S."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "devin.johnson@noaa.gov")
as necessary.
Maintainer: ‘Grant Humphries <grwhumphries@blackbawks.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Grant Humphries [aut, cre] (<https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (@kstreet13)’
  Authors@R: ‘Grant Humphries [aut, cre] (ORCID: <https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (GITHUB: @kstreet13)’
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.

The Description field contains
  2016 <arXiv:1401.7020>), adaQN (adaptive quasi-Newton) (Keskar, N.S.,
  Berahas, A.S., 2016, <arXiv:1511.01169>).  Provides functions for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.SQN.html:51:1 (print.SQN.Rd:12): Warning: missing </ul> before </div>
print.SQN_free.html:51:1 (print.SQN_free.Rd:12): Warning: missing </ul> before </div>
print.adaQN.html:51:1 (print.adaQN.Rd:12): Warning: missing </ul> before </div>
print.adaQN_free.html:51:1 (print.adaQN_free.Rd:12): Warning: missing </ul> before </div>
print.oLBFGS.html:51:1 (print.oLBFGS.Rd:12): Warning: missing </ul> before </div>
print.oLBFGS_free.html:51:1 (print.oLBFGS_free.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot_forecast.html:55:1 (plot_forecast.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Functions.R’
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘stocks.Rd’:
    https://doi.org/10.7287/peerj.preprints.3188v1
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Found the following HTML validation problems:
c_mine.html:66:1 (c_mine.Rd:20): Warning: missing </ul> before </div>
knn_dist.html:50:1 (knn_dist.Rd:12): Warning: missing </ul> before </div>
match_partial_ignorecase_nopunct.html:54:1 (match_partial_ignorecase_nopunct.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
lookup_iso_639_1.html:51:1 (lookup_iso_639_1.Rd:12): Warning: missing </ul> before </div>
stopwords_getlanguages.html:47:1 (stopwords_getlanguages.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Allen Day <allenday@allenday.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allen",
                    family = "Day",
                    role = c("aut", "cre"),
                    email = "allenday@allenday.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Thomas Arsouze <thomas.arsouze@cirad.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/umr-amap/StormR/issues/new/choose
which should likely be
  https://github.com/umr-amap/StormR/issues/new/choose/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘defStormsList.R’
Found the following HTML validation problems:
eezNC.html:47:1 (eezNC.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Deniz Akdemir <deniz.akdemir.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Deniz",
                    family = "Akdemir",
                    role = c("aut", "cre"),
                    email = "deniz.akdemir.work@gmail.com")
as necessary.
Found the following HTML validation problems:
line_cast.html:46:1 (line_cast.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "I.",
                      family = "Zhbannikov",
                      role = "aut"),
               person(given = "Liang",
                      family = "He",
                      role = "aut"),
               person(given = "K.",
                      family = "Arbeev",
                      role = "aut"),
               person(given = "I.",
                      family = "Akushevich",
                      role = "aut"),
               person(given = "A.",
                      family = "Yashin.",
                      role = "aut"),
               person(given = c("Ilya", "Y."),
                      family = "Zhbannikov",
                      role = "cre",
                      email = "ilya.zhbannikov@duke.edu"))
as necessary.
Found the following HTML validation problems:
assign_to_global.html:54:1 (assign_to_global.Rd:14): Warning: missing </ul> before </div>
prepare_data_cont.html:83:1 (prepare_data_cont.Rd:33): Warning: missing </ul> before </div>
prepare_data_discr.html:84:1 (prepare_data_discr.Rd:34): Warning: missing </ul> before </div>
trim.html:46:1 (trim.Rd:10): Warning: missing </ul> before </div>
trim.leading.html:46:1 (trim.leading.Rd:10): Warning: missing </ul> before </div>
trim.trailing.html:46:1 (trim.trailing.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Edith Gabriel <edith.gabriel@inrae.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/stpp-GitHub-community
which should likely be
  https://github.com/stpp-GitHub-community/issues
instead.
Maintainer: ‘Monsuru Adepeju <monsuur2010@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monsuru",
                    family = "Adepeju",
                    role = c("cre", "aut"),
                    email = "monsuur2010@yahoo.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/Manalytics/stppSim/issues/new/choose
which should likely be
  https://github.com/Manalytics/stppSim/issues/new/choose/issues
instead.
Maintainer: ‘Samuel Soubeyrand <samuel.soubeyrand@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Soubeyrand",
                      role = "aut"),
               person(family = "S.",
                      role = "aut"),
               person(family = "Tollenaere",
                      role = "aut"),
               person(family = "C.",
                      role = "aut"),
               person(family = "Haon-Lasportes",
                      role = "aut"),
               person(family = "E.",
                      role = "aut"),
               person(family = "Laine",
                      role = "aut"),
               person(family = "A.-L.",
                      role = "aut"),
               person(given = "Samuel",
                      family = "Soubeyrand",
                      role = "cre",
                      email = "samuel.soubeyrand@inra.fr"))
as necessary.
checkRd: (-1) powderymildew.Rd:14-16: Lost braces
    14 | \code{$demographic.coord}{
       |                          ^
checkRd: (-1) powderymildew.Rd:18-20: Lost braces
    18 | \code{$genetic.coord}{
       |                      ^
checkRd: (-1) powderymildew.Rd:22-24: Lost braces
    22 | \code{$demographic.measures}{
       |                             ^
checkRd: (-1) powderymildew.Rd:26-28: Lost braces
    26 | \code{$genetic.frequencies}{
       |                            ^
Maintainer: ‘Rachael C. Aikens <rockyaikens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
make_SR_plot.html:54:1 (make_SR_plot.Rd:15): Warning: missing </ul> before </div>
make_hist_plot.html:61:1 (make_hist_plot.Rd:19): Warning: missing </ul> before </div>
make_resid_plot.html:48:1 (make_resid_plot.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Jose Brito <jambrito@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jose",
                      family = "Brito",
                      role = c("aut", "cre"),
                      email = "jambrito@gmail.com"),
               person(given = "Pedro",
                      family = "Silva",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Veiga",
                      role = "aut"))
as necessary.
Maintainer: ‘Miles Ott <miles_ott@alumni.brown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miles",
                    family = "Ott",
                    role = c("aut", "cre"),
                    email = "miles_ott@alumni.brown.edu")
as necessary.
Maintainer: ‘Julian Busch <jb@quants.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Busch",
                    role = c("aut", "cre"),
                    email = "jb@quants.ch")
as necessary.
Found the following files/directories:
  ‘myNewStrat.R’
Found the following significant warnings:
  stratEst.cpp:1114:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  stratEst.cpp:1131:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  stratEst.cpp:3086:13: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  stratEst.cpp:3111:27: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/stratEst.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 19.1.7 (7)’
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Maintainer: ‘Michael Heath <m.heath@strath.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Heath",
                      role = c("aut", "cre"),
                      email = "m.heath@strath.ac.uk"),
               person(given = "Ian",
                      family = "Thurlbeck",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) StrathE2E2-package.Rd:70: Lost braces; missing escapes or markup?
    70 | {Basic model operations:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:79: Lost braces; missing escapes or markup?
    79 | {Parameter estimation:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:88: Lost braces; missing escapes or markup?
    88 | {Sensitivity and Monte Carlo analyses:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:98: Lost braces; missing escapes or markup?
    98 | {Compare model runs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:105: Lost braces; missing escapes or markup?
   105 | {Fishery yield analysis:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:111: Lost braces; missing escapes or markup?
   111 | {Visualize model inputs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:117: Lost braces; missing escapes or markup?
   117 | {Visualize model outputs:} \cr
       | ^
Maintainer: ‘Amr ElRafey <aelrafey@gmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Farrokh",
                      family = "Alemi",
                      role = "aut",
                      email = "falemi@gmu.edu"),
               person(given = "Amr",
                      family = "ElRafey",
                      role = c("aut", "cre"),
                      email = "aelrafey@gmu.edu"))
as necessary.
Maintainer: ‘Thomas Jemielita <thomasjemielita@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Jemielita",
                    role = c("aut", "cre"),
                    email = "thomasjemielita@gmail.com")
as necessary.

The Description field contains
  2019 <arXiv:1912.03337>. This package is in beta and will be
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Sebastien Wouters <wouterseb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastien",
                      family = "Wouters",
                      role = c("aut", "cre"),
                      email = "wouterseb@gmail.com"),
               person(given = c("Adam", "D."),
                      family = "Smith",
                      role = "ctb"))
as necessary.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.srank.html:55:1 (print.srank.Rd:14): Warning: missing </ul> before </div>
print.strat.html:55:1 (print.strat.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Xiangdong Gu <ustcgxd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangdong",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "ustcgxd@gmail.com"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Maintainer: ‘Priyanga Dilini Talagala <pritalagala@gmail.com>’

The Description field contains
  <arXiv:1908.04000> for detecting anomalies in high-dimensional data
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Verena",
                      family = "Zuber",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Nele Schuwirth <nele.schuwirth@eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nele",
                      family = "Schuwirth",
                      role = c("aut", "cre"),
                      email = "nele.schuwirth@eawag.ch"),
               person(given = "Peter",
                      family = "Reichert",
                      role = "aut"),
               person(given = "Mikolaj",
                      family = "Rybinski",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apportion_inverse.R’ ‘apportion_polygon.R’ ‘apportion_web.R’
    ‘prep_reach_dist.R’
Maintainer: ‘Stephen A Sefick Jr. <ssefick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stephen", "A"),
                    family = "Sefick Jr.",
                    role = c("aut", "cre"),
                    email = "ssefick@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/streamMOA
which should likely be
  https://github.com/mhahsler/streamMOA/issues
instead.
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pablo",
                    family = "Barbera",
                    role = c("aut", "cre"),
                    email = "pablo.barbera@nyu.edu")
as necessary.
Found the following HTML validation problems:
createOAuthToken.html:60:1 (createOAuthToken.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
subsample_et.html:57:1 (subsample_et.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Streetscape-class.html:234:1 (Streetscape-class.Rd:131): Warning: missing </ul> before </div>
Streetscape-class.html:114:1 (Streetscape-class.Rd:66): Warning: <h5> anchor "Usage" already defined
Streetscape-class.html:146:1 (Streetscape-class.Rd:85): Warning: <h5> anchor "Usage" already defined
Streetscape-class.html:153:1 (Streetscape-class.Rd:88): Warning: <h5> anchor "Arguments" already defined
Streetscape-class.html:172:1 (Streetscape-class.Rd:98): Warning: <h5> anchor "Usage" already defined
Streetscape-class.html:179:1 (Streetscape-class.Rd:101): Warning: <h5> anchor "Arguments" already defined
Streetscape-class.html:206:1 (Streetscape-class.Rd:118): Warning: <h5> anchor "Usage" already defined
Streetscape-class.html:214:1 (Streetscape-class.Rd:122): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Sebastian Henz <bastihz.dev@posteo.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecxsys.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
  File ‘multi_tox.Rd’:
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘multiple_stress.Rd’:
    https://doi.org/10.1021/acs.est.9b04293
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘stressaddition-package.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
    https://doi.org/10.1186/s12302-020-00394-7
Found the following HTML validation problems:
rmse.html:51:1 (rmse.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Matt Barry <mrb@softisms.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Barry",
                    role = c("aut", "cre"),
                    email = "mrb@softisms.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Alessandro Barbiero <alessandro.barbiero@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessandro",
                      family = "Barbiero",
                      role = c("aut", "cre"),
                      email = "alessandro.barbiero@unimi.it"),
               person(given = "Riccardo",
                      family = "Inchingolo",
                      role = "aut",
                      email = "dott.inchingolo_r@libero.it"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tom Drake <t.drake@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Drake",
                    role = c("aut", "cre"),
                    email = "t.drake@ed.ac.uk")
as necessary.
Maintainer: ‘Alexander Hoyle <alexander@alexanderhoyle.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Hoyle",
                    role = c("aut", "cre"),
                    email = "alexander@alexanderhoyle.com")
as necessary.
Maintainer: ‘Bert Gunter <bgunter@comcast.net>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘strucplot.Rd’:
    \concept{
      structured plots,structured trellis plot [TRUNCATED]
Found the following HTML validation problems:
confidence.html:42:1 (confidence.Rd:9): Warning: missing </ul> before </div>
control.html:40:1 (control.Rd:7): Warning: missing </ul> before </div>
data.html:40:1 (data.Rd:7): Warning: missing </ul> before </div>
gapCV.html:41:1 (gapCV.Rd:8): Warning: missing </ul> before </div>
lambdas.html:43:1 (lambdas.Rd:10): Warning: missing </ul> before </div>
nFold.html:40:1 (nFold.Rd:7): Warning: missing </ul> before </div>
nMCIter.html:40:1 (nMCIter.Rd:7): Warning: missing </ul> before </div>
pattern.html:42:1 (pattern.Rd:9): Warning: missing </ul> before </div>
predictors.html:97:1 (predictors.Rd:46): Warning: missing </ul> before </div>
reltol.html:41:1 (reltol.Rd:8): Warning: missing </ul> before </div>
reportDimensionsOnly.html:42:1 (reportDimensionsOnly.Rd:9): Warning: missing </ul> before </div>
robust.html:40:1 (robust.Rd:7): Warning: missing </ul> before </div>
solver.html:43:1 (solver.Rd:10): Warning: missing </ul> before </div>
strDesign.html:42:1 (strDesign.Rd:9): Warning: missing </ul> before </div>
trace.html:40:1 (trace.Rd:7): Warning: missing </ul> before </div>
efpFunctional: multiple local function definitions for ‘plotProcess’
  with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
  different formal arguments
Maintainer: ‘Moritz Berger <Moritz.Berger@imbie.uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Moritz",
                    family = "Berger",
                    role = c("aut", "cre"),
                    email = "moritz.berger@imbie.uni-bonn.de")
as necessary.
Maintainer: ‘Yifu Liu <2012johnnyliu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yifu",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "2012johnnyliu@gmail.com"),
               person(given = "Anru",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                            ^
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                            ^
Found the following HTML validation problems:
speaker_odds.html:59:1 (speaker_odds.Rd:17): Warning: missing </ul> before </div>
term_influence.html:54:1 (term_influence.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘I. Manjula Schou <im.schou@yahoo.com.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("I.", "Manjula"),
                    family = "Schou",
                    role = c("aut", "cre"),
                    email = "im.schou@yahoo.com.au")
as necessary.
Maintainer: ‘Jerome Collet <jeromepcollet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jerome",
                    family = "Collet",
                    role = c("aut", "cre"),
                    email = "jeromepcollet@gmail.com")
as necessary.
Found the following HTML validation problems:
createFilteredTable.html:88:1 (createFilteredTable.Rd:36): Warning: missing </ul> before </div>
createParentTable.html:70:1 (createParentTable.Rd:22): Warning: missing </ul> before </div>
createPlot_points_data_complement.html:54:1 (createPlot_points_data_complement.Rd:14): Warning: missing </ul> before </div>
interaction_plot2.html:113:1 (interaction_plot2.Rd:51): Warning: missing </ul> before </div>
pseudo_contexts.html:56:1 (pseudo_contexts.Rd:15): Warning: missing </ul> before </div>
pseudo_func.html:54:1 (pseudo_func.Rd:14): Warning: missing </ul> before </div>
subscreen_mosaicPlot.html:88:1 (subscreen_mosaicPlot.Rd:36): Warning: missing </ul> before </div>
subscreenshow.html:93:1 (subscreenshow.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Andrew Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Found the following HTML validation problems:
Print_SubTite.html:46:1 (Print_SubTite.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Chonghui",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Scott Barlowe <sabarlowe@email.wcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Scott",
                    family = "Barlowe",
                    role = c("aut", "cre"),
                    email = "sabarlowe@email.wcu.edu")
as necessary.
Found the following HTML validation problems:
bernoulli_ARL_MC.html:57:1 (bernoulli_ARL_MC.Rd:16): Warning: missing </ul> before </div>
bernoulli_ARL_SPRT.html:96:1 (bernoulli_ARL_SPRT.Rd:41): Warning: missing </ul> before </div>
bernoulli_cdf_MC.html:57:1 (bernoulli_cdf_MC.Rd:16): Warning: missing </ul> before </div>
calc_MC_trans_matrix.html:90:1 (calc_MC_trans_matrix.Rd:37): Warning: missing </ul> before </div>
calc_Wncdf.html:87:1 (calc_Wncdf.Rd:34): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_sudachipy_env.html:47:1 (create_sudachipy_env.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "Bill.Venables@gmail.com")
as necessary.
Maintainer: ‘David Brahm <brahm@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Brahm",
                      role = c("aut", "cre"),
                      email = "brahm@alum.mit.edu"),
               person(given = "Greg",
                      family = "Snow",
                      role = "aut",
                      email = "Greg.Snow@intermountainmail.org"),
               person(given = c("with", "contributions", "from", "Curt"),
                      family = "Seeliger",
                      role = "aut",
                      email = "Seeliger.Curt@epamail.epa.gov"),
               person(given = "Henrik",
                      family = "Bengtsson.",
                      role = "aut",
                      email = "hb@maths.lth.se"))
as necessary.
Maintainer: ‘Dianne Cook <dicook@monash.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) fp19.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:12-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:25: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_glyph_ribbon.R’ ‘geom_glyph_ribbon.Rd’ ‘geom_glyph_segment.Rd’
    ‘theme_glyph.Rd’
checkRd: (-1) suggests.Rd:14: Lost braces; missing escapes or markup?
    14 | {suggests} aims to make that workflow as minimal and painless as possible,
       | ^
Maintainer: ‘Ting-Huei Chen <tingstat22@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ting-Huei",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "tingstat22@gmail.com")
as necessary.
Found the following HTML validation problems:
print.stby.html:128:1 (print.stby.Rd:69): Warning: missing </ul> before </div>
Maintainer: ‘Alexander Fischer <alexander-fischer1801@t-online.de>’

The Description field contains
  2022; <arXiv:2205.03288v1>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
aggPixelPreds.html:85:1 (aggPixelPreds.Rd:34): Warning: missing </ul> before </div>
iid.new.html:53:1 (iid.new.Rd:15): Warning: missing </ul> before </div>
iid.new.pc.html:53:1 (iid.new.pc.Rd:15): Warning: missing </ul> before </div>
rw.new.html:53:1 (rw.new.Rd:15): Warning: missing </ul> before </div>
rw.new.pc.html:53:1 (rw.new.pc.Rd:15): Warning: missing </ul> before </div>
st.new.html:53:1 (st.new.Rd:15): Warning: missing </ul> before </div>
st.new.pc.html:53:1 (st.new.pc.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
build_histogram_plot.html:54:1 (build_histogram_plot.Rd:14): Warning: missing </ul> before </div>
build_scatter_plot.html:54:1 (build_scatter_plot.Rd:14): Warning: missing </ul> before </div>
divide_features_one.html:50:1 (divide_features_one.Rd:12): Warning: missing </ul> before </div>
divide_features_two.html:50:1 (divide_features_two.Rd:12): Warning: missing </ul> before </div>
divide_vector.html:64:1 (divide_vector.Rd:20): Warning: missing </ul> before </div>
feature_selection_one.html:54:1 (feature_selection_one.Rd:14): Warning: missing </ul> before </div>
feature_selection_two.html:54:1 (feature_selection_two.Rd:14): Warning: missing </ul> before </div>
simulate_twoOmicsData.html:93:1 (simulate_twoOmicsData.Rd:39): Warning: missing </ul> before </div>
File ‘sumR/libs/sumR.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Anna Vesely <anna.vesely@phd.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Vesely",
                    role = c("aut", "cre"),
                    email = "anna.vesely@phd.unipd.it")
as necessary.

The Description field contains
  may be found in Vesely, Finos, and Goeman (2020) <arXiv:2102.11759>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sunburst.Rd:30: Lost braces; missing escapes or markup?
    30 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{csvdata}
       |                                ^
checkRd: (-1) sunburst.Rd:88: Lost braces; missing escapes or markup?
    88 | \item{jsondata}{\code{deprecated} use data argument instead; data in nested d3 JSON hierarchy with `{name:...,  children:[];}`}
       |                                                                                                     ^
checkRd: (-1) sund2b.Rd:22: Lost braces; missing escapes or markup?
    22 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{list}, \code{character},
       |                                ^
Found the following HTML validation problems:
d2b-shiny.html:68:1 (d2b-shiny.Rd:25): Warning: missing </ul> before </div>
sunburst-shiny.html:68:1 (sunburst-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Roel Braekers <roel.braekers@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leen",
                      family = "Prenen",
                      role = "aut"),
               person(given = "Roel",
                      family = "Braekers",
                      role = c("aut", "cre"),
                      email = "roel.braekers@uhasselt.be"),
               person(given = "Luc",
                      family = "Duchateau",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"))
as necessary.
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcel",
                      family = "Dettling",
                      role = "aut",
                      email = "marcel.dettling@zhaw.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Tatsiana Khamiakova <t.tavita@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tatsiana",
                    family = "Khamiakova",
                    role = c("aut", "cre"),
                    email = "t.tavita@gmail.com")
as necessary.
checkRd: (-1) BiclustSet-class.Rd:19: Lost braces
    19 |     \item{\code{Number}:}{code{"numeric"}, number of biclusters in the set}
       |                               ^
Found the following HTML validation problems:
supercell_GeneGenePlot_single.html:98:1 (supercell_GeneGenePlot_single.Rd:42): Warning: missing </ul> before </div>
supercell_VlnPlot_single.html:103:1 (supercell_VlnPlot_single.Rd:45): Warning: missing </ul> before </div>
Maintainer: ‘Le Bao <lbaole17@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Le Bao",
                      role = c("aut", "cre"),
                      email = "lbaole17@gmail.com"),
               person(given = "Jeff",
                      family = "Gill",
                      role = "aut",
                      email = "jgill@mac.com"),
               person(given = "Tsung-han",
                      family = "Tsai",
                      role = "aut",
                      email = "thtsai@nccu.edu.tw"),
               person(given = "Jonathan",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Maintainer: ‘Minghui Wang <minghui.wang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "minghui.wang@mssm.edu"),
               person(given = "Yongzhong",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.Rd:42: Lost braces; missing escapes or markup?
    42 |  \item{color.off}{color code; specifying the color for set(s) which are "{absent}" for an intersection.}
       |                                                                          ^
Found the following HTML validation problems:
SL.bartMachine.html:123:1 (SL.bartMachine.Rd:58): Warning: missing </ul> before </div>
SL.cforest.html:102:1 (SL.cforest.Rd:40): Warning: missing </ul> before </div>
predict.SL.bartMachine.html:69:1 (predict.SL.bartMachine.Rd:22): Warning: missing </ul> before </div>
predict.SL.kernelKnn.html:55:1 (predict.SL.kernelKnn.Rd:14): Warning: missing </ul> before </div>
predict.SL.xgboost.html:59:1 (predict.SL.xgboost.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Aaron B. Shev <abshev@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aaron", "B."),
                    family = "Shev",
                    role = c("aut", "cre"),
                    email = "abshev@ucdavis.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mice.impute.SuperLearner.Rd: SuperLearner
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  KNNTrainer.Rd: R6Class
  LabelEncoder.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  level_pairs.Rd: tibble
  new_pairwise_tbl.Rd: tibble
  row_blank.Rd: tibble_row
  row_error.Rd: tibble_row
  row_term.Rd: tibble_row
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
Image_Segmentation.html:84:1 (Image_Segmentation.Rd:118): Warning: <h3> anchor "Methods" already defined
Image_Segmentation.html:132:1 (Image_Segmentation.Rd:141): Warning: <h5> anchor "Usage" already defined
Image_Segmentation.html:233:1 (Image_Segmentation.Rd:231): Warning: <h5> anchor "Usage" already defined
Image_Segmentation.html:244:1 (Image_Segmentation.Rd:240): Warning: <h5> anchor "Arguments" already defined
Image_Segmentation.html:271:1 (Image_Segmentation.Rd:258): Warning: <h5> anchor "Usage" already defined
Image_Segmentation.html:281:1 (Image_Segmentation.Rd:266): Warning: <h5> anchor "Arguments" already defined
Image_Segmentation.html:308:1 (Image_Segmentation.Rd:283): Warning: <h5> anchor "Usage" already defined
Image_Segmentation.html:314:1 (Image_Segmentation.Rd:287): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
gamma.html:68:1 (gamma.Rd:22): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:35:1 (inst/NEWS.Rd:13): Warning: <h3> anchor "Changes-in-version-1.1-9.8-+282024-09-03+29" already defined
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Ethan Alt <ethanalt@live.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ethan",
                    family = "Alt",
                    role = c("aut", "cre"),
                    email = "ethanalt@live.unc.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/surbayes.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
predict_surbayes_cpp.html:62:1 (predict_surbayes_cpp.Rd:18): Warning: missing </ul> before </div>
predict_surbayes_helper.html:59:1 (predict_surbayes_helper.Rd:16): Warning: missing </ul> before </div>
sur_sample_cov_helper_cpp.html:71:1 (sur_sample_cov_helper_cpp.Rd:22): Warning: missing </ul> before </div>
sur_sample_cpp.html:71:1 (sur_sample_cpp.Rd:22): Warning: missing </ul> before </div>
checkRd: (-1) getFittedProbs.Rd:6-8: Lost braces
     6 | getFittedValues <- function(object) {
       |                                     ^
checkRd: (-1) getFittedProbs.Rd:14-16: Lost braces
    14 | getFittedValues <- function(object) {
       |                                     ^
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Found the following HTML validation problems:
estimate_ICA_OrdCont.html:117:1 (estimate_ICA_OrdCont.Rd:57): Warning: missing </ul> before </div>
plot.vine_copula_fit.html:111:1 (plot.vine_copula_fit.Rd:60): Warning: missing </ul> before </div>
print.vine_copula_fit.html:52:1 (print.vine_copula_fit.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
CheckInit.html:46:1 (CheckInit.Rd:10): Warning: missing </ul> before </div>
CheckTestSpec.html:51:1 (CheckTestSpec.Rd:13): Warning: missing </ul> before </div>
IterUpdate.html:63:1 (IterUpdate.Rd:19): Warning: missing </ul> before </div>
bnr-method.html:47:1 (bnr-method.Rd:10): Warning: missing </ul> before </div>
coef.bnr.html:55:1 (coef.bnr.Rd:14): Warning: missing </ul> before </div>
print.bnr.html:55:1 (print.bnr.Rd:14): Warning: missing </ul> before </div>
residuals.bnr.html:55:1 (residuals.bnr.Rd:14): Warning: missing </ul> before </div>
vcov.bnr.html:62:1 (vcov.bnr.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Yunro Chung <yunro.chung@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yunro",
                    family = "Chung",
                    role = c("cre", "aut"),
                    email = "yunro.chung@asu.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘surrosurvROC-package.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
  File ‘surrosurvROC.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"))
as necessary.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Joao Pinto <joao.pinto@tecnico.ulisboa.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joao",
                      family = "Pinto",
                      role = c("aut", "cre"),
                      email = "joao.pinto@tecnico.ulisboa.pt"),
               person(given = "Andre",
                      family = "Verissimo",
                      role = "aut",
                      email = "andre.verissimo@tecnico.ulisboa.pt"),
               person(given = "Alexandra",
                      family = "Carvalho",
                      role = "aut",
                      email = "alexandra.carvalho@tecnico.ulisboa.pt"),
               person(given = "Susana",
                      family = "Vinga",
                      role = "aut",
                      email = "susanavinga@tecnico.ulisboa.pt"))
as necessary.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hajime",
                    family = "Uno",
                    role = c("aut", "cre"),
                    email = "huno@jimmy.harvard.edu")
as necessary.
Found the following HTML validation problems:
VEC2MAT.html:53:1 (VEC2MAT.Rd:17): Warning: missing </ul> before </div>
conc.html:63:1 (conc.Rd:20): Warning: missing </ul> before </div>
kmcens.html:58:1 (kmcens.Rd:20): Warning: missing </ul> before </div>
unoCW.html:83:1 (unoCW.Rd:29): Warning: missing </ul> before </div>
unoU2P.html:53:1 (unoU2P.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
linear_beta.html:46:1 (linear_beta.Rd:10): Warning: missing </ul> before </div>
ml_hyperparams_srf.html:70:1 (ml_hyperparams_srf.Rd:25): Warning: missing </ul> before </div>
summary.survcompare.html:51:1 (summary.survcompare.Rd:12): Warning: missing </ul> before </div>
survsrfstack_cv.html:118:1 (survsrfstack_cv.Rd:54): Warning: missing </ul> before </div>
Found the following HTML validation problems:
stand_surveil.html:122:1 (stand_surveil.Rd:47): Warning: <h4> anchor "print.stand_surveil" already defined
stand_surveil.html:129:1 (stand_surveil.Rd:52): Warning: <h4> anchor "plot.stand_surveil" already defined
surveil_diff.html:132:1 (surveil_diff.Rd:63): Warning: missing </ul> before </div>
Maintainer: ‘Guo-You Lan <jj6020770416jj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsin-wen",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "hwchang@stat.sinica.edu.tw")
as necessary.
Found the following HTML validation problems:
get.weights.html:47:1 (get.weights.Rd:10): Warning: missing </ul> before </div>
vcat.html:50:1 (vcat.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cbind.surveydata.html:51:1 (cbind.surveydata.Rd:12): Warning: missing </ul> before </div>
merge.html:55:1 (merge.Rd:15): Warning: missing </ul> before </div>
merge_varlabels.html:54:1 (merge_varlabels.Rd:14): Warning: missing </ul> before </div>
rm.attrs.html:46:1 (rm.attrs.Rd:10): Warning: missing </ul> before </div>
rm.pattern.html:46:1 (rm.pattern.Rd:10): Warning: missing </ul> before </div>
survey_plot_title.html:54:1 (survey_plot_title.Rd:14): Warning: missing </ul> before </div>
surveydata-deprecated.html:108:1 (surveydata-deprecated.Rd:49): Warning: missing </ul> before </div>
Found the following HTML validation problems:
sd_dashboard.html:61:1 (sd_dashboard.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
berlinbears.html:65:1 (berlinbears.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
body_fat.html:69:1 (body_fat.Rd:23): Warning: missing </ul> before </div>
nhanes.demo.html:69:1 (nhanes.demo.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
svyby.html:233:1 (svyby.Rd:135): Warning: <h3> anchor "_sec_note" already defined
svyglm.html:201:1 (svyglm.Rd:109): Warning: <h3> anchor "_sec_note" already defined
Found the following HTML validation problems:
print.surveysd.html:53:1 (print.surveysd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Tianxi",
                      family = "Cai",
                      role = "aut"))
as necessary.
Maintainer: ‘Marta Sestelo <sestelo@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Marta",
                      family = "Sestelo",
                      role = c("aut", "cre"),
                      email = "sestelo@uvigo.es"),
               person(given = "Gustavo",
                      family = "Soutinho",
                      role = "aut"))
as necessary.
checkRd: (-1) tprob.Rd:138: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:139: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:141: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:142: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:146: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coxph_mpl_dc.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{mpl_h0t}{MPL estimates of the baseline hazard for T, i.e. h_{0T}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{mpl_h0c}{MPL estimates of the baseline hazard for C, i.e. h_{0C}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{mpl_H0t}{MPL estimates of the baseline cumulative hazard for T, i.e. H_{0T}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{mpl_H0c}{MPL estimates of the baseline cumulative hazard for C, i.e. H_{0c}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{mpl_S0t}{MPL estimates of the baseline survival for T, i.e. S_{0T}(x_i)}
       |                                                                     ^
checkRd: (-1) coxph_mpl_dc.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{mpl_S0c}{MPL estimates of the baseline survival for C, i.e. S_{0C}(x_i)}
       |                                                                     ^
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:3511:1 (inst/NEWS.Rd:2361): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.summary.coxph.html:71:1 (print.summary.coxph.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Maintainer: ‘Michael Komodromos <mk1019@ic.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Komodromos",
                    role = c("aut", "cre"),
                    email = "mk1019@ic.ac.uk")
as necessary.

The Description field contains
  information see Komodromos et al. (2021) <arXiv:2112.10270>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
ggsurvplot_arguments.html:413:1 (ggsurvplot_arguments.Rd:231): Warning: missing </ul> before </div>
Maintainer: ‘Chris Dardis <christopherdardis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Dardis",
                    role = c("aut", "cre"),
                    email = "christopherdardis@gmail.com")
as necessary.
checkRd: (-1) sf.Rd:66: Lost braces; missing escapes or markup?
    66 | A {data.table} which is stored as an attribute of
       |   ^
Maintainer: ‘Marta Bofill Roig <marta.bofillroig@meduniwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marta", "Bofill"),
                      family = "Roig",
                      role = c("aut", "cre"),
                      email = "marta.bofillroig@meduniwien.ac.at"),
               person(given = c("Guadalupe", "Gomez"),
                      family = "Melis",
                      role = "ctb"),
               person(given = "Yu",
                      family = "Shen",
                      role = "ctb"))
as necessary.

The Description field contains
  found in Bofill, Shen & Gómez (2021) <arXiv:2008.12887>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘censor_event.Rd’ ‘survival_class.R’
Maintainer: ‘Xuefei Jia <xuefeij.ai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuefei",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "xuefeij.ai@gmail.com")
as necessary.
Found the following HTML validation problems:
plot_hr_pi.html:51:1 (plot_hr_pi.Rd:13): Warning: missing </ul> before </div>
plot_km_pi.html:56:1 (plot_km_pi.Rd:16): Warning: missing </ul> before </div>
survparamsim-methods.html:67:1 (survparamsim-methods.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = "aut"),
               person(given = "Angel",
                      family = "Cronin",
                      role = "aut"),
               person(given = "Chakib",
                      family = "Battioui",
                      role = "aut"),
               person(given = "James",
                      family = "Bell",
                      role = "aut"))
as necessary.
Maintainer: ‘Rong Huang <roh019@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rong",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "roh019@ucsd.edu"),
               person(given = "Ronghui",
                      family = "Xu",
                      role = "aut",
                      comment = "Lily"))
as necessary.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Sibley <dcibioinformatics@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kouros",
                      family = "Owzar",
                      role = "aut"),
               person(given = "Zhiguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Nancy",
                      family = "Cox",
                      role = "aut"),
               person(given = "Sin-Ho",
                      family = "Jung",
                      role = "aut"),
               person(given = "Chanhee",
                      family = "Yi",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Sibley",
                      role = "cre",
                      email = "dcibioinformatics@duke.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhuowei Sun <sunzw21@mails.jlu.edu.cn>’

The Description field contains
  <arXiv:2310.15877> and Sun, D. et al. (2023) <arXiv:2308.15549>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
emmeans-survstan-helpers.html:61:1 (emmeans-survstan-helpers.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Lior Rennert <liorr@clemson.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lior",
                      family = "Rennert",
                      role = c("aut", "cre"),
                      email = "liorr@clemson.edu"),
               person(given = "Yidan",
                      family = "Shi",
                      role = "aut",
                      email = "yidan.shi@pennmedicine.upenn.edu"))
as necessary.
checkRd: (-1) coxDT.Rd:76: Lost braces; missing escapes or markup?
    76 | The estimation procedure here is performed using coxph {survival} and inserting these estimated
       |                                                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘suso_gql_helpers.R’ ‘suso_gql_uploadMap.R’
Found the following HTML validation problems:
str.sValues.html:56:1 (str.sValues.Rd:15): Warning: missing </ul> before </div>
summary.sValues.html:51:1 (summary.sValues.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
SveltePlots.html:46:1 (SveltePlots.Rd:10): Warning: missing </ul> before </div>
add_bars.html:63:1 (add_bars.Rd:18): Warning: missing </ul> before </div>
add_xy.html:100:1 (add_xy.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.svem_significance_test.html:51:1 (print.svem_significance_test.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_svgz.html:46:1 (create_svgz.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
svgPanZoom-shiny.html:66:1 (svgPanZoom-shiny.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Aaron M Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aaron", "M"),
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = c("Alejandro", "J"),
                      family = "Romero",
                      role = "aut"))
as necessary.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘createSyntaxFile.Rd’:
    \concept{ Syntax highlighting, code coloring }
  File ‘guiDDEInstall.Rd’:
    \concept{ Interprocess DDE communication, call tip [TRUNCATED]
  File ‘svIDE-package.Rd’:
    \concept{ GUI API IDE and code editor, language sy [TRUNCATED]
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) koInstall.Rd:24: Lost braces; missing escapes or markup?
    24 | set, svKomodo loads {svSocket}, starts the socket server listening to the
       |                     ^
checkRd: (-1) svKomodo-package.Rd:18: Lost braces; missing escapes or markup?
    18 | Komodo and (2) the present {svKomodo} R package that work hand in hand to
       |                            ^
checkRd: (-1) svKomodo-package.Rd:28: Lost braces; missing escapes or markup?
    28 | Nevertheless, the SciViews-K Komodo addin and the {svKomodo} R package
       |                                                   ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                          ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                                         ^
checkRd: (-1) svKomodo-package.Rd:37: Lost braces; missing escapes or markup?
    37 | Both SciViews-K and {svKomodo} should be considered archived items. I keep
       |                     ^
Found the following HTML validation problems:
X.svmmaj.html:58:1 (X.svmmaj.Rd:18): Warning: missing </ul> before </div>
plot.svmmajcrossval.html:61:1 (plot.svmmajcrossval.Rd:17): Warning: missing </ul> before </div>
plotWeights.html:60:1 (plotWeights.Rd:15): Warning: missing </ul> before </div>
print.svmmaj.html:113:1 (print.svmmaj.Rd:23): Warning: missing </ul> before </div>
print.svmmajcrossval.html:59:1 (print.svmmajcrossval.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Trevor",
                    family = "Hastie",
                    role = c("aut", "cre"),
                    email = "hastie@stanford.edu")
as necessary.
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Challet",
                    role = c("aut", "cre"),
                    email = "damien.challet@gmail.com")
as necessary.
Maintainer: ‘Uditha Amarananda Wijesuriya <u.wijesuriya@usi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Uditha", "Amarananda"),
                    family = "Wijesuriya",
                    role = c("aut", "cre"),
                    email = "u.wijesuriya@usi.edu")
as necessary.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘bibRNews.Rd’:
    \concept{ BibTeX bibliography, R News }
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

The Description field contains
  likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mithat Gonen <gonenm@mskcc.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
example_data_wroc.html:58:1 (example_data_wroc.Rd:17): Warning: missing </ul> before </div>
example_variables_wroc.html:62:1 (example_variables_wroc.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
simdata_lasso_binomial.html:85:1 (simdata_lasso_binomial.Rd:31): Warning: missing </ul> before </div>
simdata_lasso_binomial.html:60:1 (simdata_lasso_binomial.Rd:20): Warning: <h4> anchor "+E2+80+98simdata_lasso_binomial+E2+80+99" already defined
checkRd: (-1) eff_n.Rd:32: Lost braces; missing escapes or markup?
    32 | \code{\link[survey:surveysummary]{survey::svymean()}} and related functions from the {survey}
       |                                                                                      ^
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Maintainer: ‘Xingye Qiao <qiao@math.binghamton.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘swa.Rd’:
    \keyword{classification,}
    \keyword{selection,}
Found the following HTML validation problems:
coefficients.swdft_mod.html:51:1 (coefficients.swdft_mod.Rd:12): Warning: missing </ul> before </div>
demod_swdft.html:50:1 (demod_swdft.Rd:12): Warning: missing </ul> before </div>
fitted.swdft_mod.html:51:1 (fitted.swdft_mod.Rd:12): Warning: missing </ul> before </div>
get_aphi.html:58:1 (get_aphi.Rd:16): Warning: missing </ul> before </div>
get_freq_range.html:50:1 (get_freq_range.Rd:12): Warning: missing </ul> before </div>
get_loglik.html:58:1 (get_loglik.Rd:16): Warning: missing </ul> before </div>
get_p_range.html:62:1 (get_p_range.Rd:18): Warning: missing </ul> before </div>
get_sigma.html:54:1 (get_sigma.Rd:14): Warning: missing </ul> before </div>
get_sl.html:50:1 (get_sl.Rd:12): Warning: missing </ul> before </div>
lcr_loglik.html:62:1 (lcr_loglik.Rd:18): Warning: missing </ul> before </div>
moving_average.html:50:1 (moving_average.Rd:12): Warning: missing </ul> before </div>
plot.swdft.html:137:1 (plot.swdft.Rd:60): Warning: missing </ul> before </div>
plot.swdft_mod.html:55:1 (plot.swdft_mod.Rd:14): Warning: missing </ul> before </div>
residuals.swdft_mod.html:51:1 (residuals.swdft_mod.Rd:12): Warning: missing </ul> before </div>
swdft2d_fft.html:54:1 (swdft2d_fft.Rd:14): Warning: missing </ul> before </div>
swdft2d_fftw.html:54:1 (swdft2d_fftw.Rd:14): Warning: missing </ul> before </div>
swdft_base_3d.html:58:1 (swdft_base_3d.Rd:16): Warning: missing </ul> before </div>
swdft_to_props.html:46:1 (swdft_to_props.Rd:10): Warning: missing </ul> before </div>
unwrap_phase.html:46:1 (unwrap_phase.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Chung-hong Chan <chainsawtiney@gmail.com>’

The Description field contains
  (Mazini et al., 2019) <arXiv:1904.04047>, SemAxis (An et al., 2018)
  <arXiv:1806.05521>, Relative Negative Sentiment Bias (Sweeney &
  Test (Dev & Phillips, 2019) <arXiv:1901.07656>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
add_index.html:51:1 (add_index.Rd:13): Warning: missing </ul> before </div>
arima_string.html:51:1 (arima_string.Rd:12): Warning: missing </ul> before </div>
bats_string.html:47:1 (bats_string.Rd:10): Warning: missing </ul> before </div>
sw_augment_columns.html:59:1 (sw_augment_columns.Rd:17): Warning: missing </ul> before </div>
tbats_string.html:47:1 (tbats_string.Rd:10): Warning: missing </ul> before </div>
validate_index.html:51:1 (validate_index.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Mans Magnusson <mons.magnusson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mans",
                      family = "Magnusson",
                      role = c("aut", "cre"),
                      email = "mons.magnusson@gmail.com"),
               person(given = "Erik",
                      family = "Bulow",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
swfscAirDAS-internals.html:165:1 (swfscAirDAS-internals.Rd:91): Warning: missing </ul> before </div>
Found the following HTML validation problems:
betaParams.html:51:1 (betaParams.Rd:12): Warning: missing </ul> before </div>
gammaParams.html:51:1 (gammaParams.Rd:12): Warning: missing </ul> before </div>
lab.wid.html:46:1 (lab.wid.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Juan Xiong <jxiong@szu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juan",
                      family = "Xiong",
                      role = c("aut", "cre"),
                      email = "jxiong@szu.edu.cn"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Found the following HTML validation problems:
age_format_helper.html:49:1 (age_format_helper.Rd:12): Warning: missing </ul> before </div>
sec_format_helper.html:49:1 (sec_format_helper.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jessica Weiss <jessica.weiss@uhnresearch.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jessica",
                      family = "Weiss",
                      role = c("aut", "cre"),
                      email = "jessica.weiss@uhnresearch.ca"),
               person(given = "Wei",
                      family = "Xu",
                      role = "aut",
                      email = "Wei.Xu@uhnresearch.ca"))
as necessary.
Maintainer: ‘Silvana M. Pesenti <swimpackage@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Additional functions and data sets
    Amendments to functions
Found the following HTML validation problems:
testit.html:51:1 (testit.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
select_language.html:57:1 (select_language.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Found the following HTML validation problems:
logfun.html:58:1 (logfun.Rd:24): Warning: missing </ul> before </div>
makeManifest.html:50:1 (makeManifest.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
grad_msel.html:76:1 (grad_msel.Rd:29): Warning: missing </ul> before </div>
lnL_msel.html:75:1 (lnL_msel.Rd:28): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  import_local_nut.Rd: rem_reps, all_params, all_params_dtrng,
    single_param
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Josef Fruehwald <jofrhwld@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Fruehwald",
                    role = c("aut", "cre"),
                    email = "jofrhwld@gmail.com")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:87:1 (inst/NEWS.Rd:31): Warning: missing </ul> before </div>
NEWS.html:43:1 (inst/NEWS.Rd:13): Warning: <h4> anchor "changed" already defined
NEWS.html:61:1 (inst/NEWS.Rd:21): Warning: <h4> anchor "changed" already defined
checkRd: (-1) hyph.support.en.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hyph.support.en.Rd:20: Lost braces in \itemize; meant \describe ?
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:289:1 (inst/NEWS.Rd:133): Warning: missing </ul> before </div>
NEWS.html:71:1 (inst/NEWS.Rd:27): Warning: <h4> anchor "fixed" already defined
NEWS.html:82:1 (inst/NEWS.Rd:32): Warning: <h4> anchor "changed" already defined
NEWS.html:130:1 (inst/NEWS.Rd:56): Warning: <h4> anchor "fixed" already defined
NEWS.html:146:1 (inst/NEWS.Rd:64): Warning: <h4> anchor "changed" already defined
NEWS.html:170:1 (inst/NEWS.Rd:76): Warning: <h4> anchor "changed" already defined
NEWS.html:188:1 (inst/NEWS.Rd:84): Warning: <h4> anchor "added" already defined
NEWS.html:214:1 (inst/NEWS.Rd:96): Warning: <h4> anchor "changed" already defined
NEWS.html:242:1 (inst/NEWS.Rd:112): Warning: <h4> anchor "added" already defined
NEWS.html:275:1 (inst/NEWS.Rd:129): Warning: <h4> anchor "removed" already defined
checkRd: (-1) kRp.hyphen-methods.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Vinicius Quintas Souto Maior <vinicius@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vinicius", "Quintas", "Souto"),
                      family = "Maior",
                      role = c("aut", "cre", "cph"),
                      email = "vinicius@de.ufpe.br"),
               person(given = c("Francisco", "Jose", "A"),
                      family = "Cysneiros",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘elliptical.ts.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘influence.Rd’:
    https://doi.org/10.1080/03610929308831105
    https://doi.org/10.2307/3109764
    https://doi.org/10.1198/073500104000000217
  File ‘predict.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘sym.arma-package.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
checkRd: (-1) elliptical.ts.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{epsilon}{positive convergence tolerance \emph{e}; the iterations converge when |fit - fit_{old}|/|fit| < \emph{e}. Default is \emph{e=1e-04}.}
       |                                                                                                   ^
Maintainer: ‘Alexander Grueneberg <cran@agrueneberg.info>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
load.symDMatrix.html:61:1 (load.symDMatrix.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Blagoje Ivanović <blagoje.ivanovic@matf.bg.ac.rs>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Blagoje",
                    family = "Ivanović",
                    role = c("aut", "cre"),
                    email = "blagoje.ivanovic@matf.bg.ac.rs")
as necessary.
Maintainer: ‘Kem Phillips <kemphillips@comcast.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kem",
                    family = "Phillips",
                    role = c("aut", "cre"),
                    email = "kemphillips@comcast.net")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/symphony.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Grabchak <mgrabcha@uncc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Grabchak",
                      role = c("aut", "cre"),
                      email = "mgrabcha@uncc.edu"),
               person(given = "Lijuan",
                      family = "Cao",
                      role = "aut",
                      email = "lcao2@uncc.edu"))
as necessary.
Found the following HTML validation problems:
describe-methods.html:48:1 (describe-methods.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Tarik C. Gouhier <tarik.gouhier@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tarik", "C."),
                    family = "Gouhier",
                    role = c("aut", "cre"),
                    email = "tarik.gouhier@gmail.com")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:174:1 (inst/NEWS.Rd:81): Warning: missing </ul> before </div>
NEWS.html:40:1 (inst/NEWS.Rd:14): Warning: <h4> anchor "fixed" already defined
NEWS.html:55:1 (inst/NEWS.Rd:22): Warning: <h4> anchor "fixed" already defined
NEWS.html:86:1 (inst/NEWS.Rd:39): Warning: <h4> anchor "fixed" already defined
NEWS.html:103:1 (inst/NEWS.Rd:49): Warning: <h4> anchor "fixed" already defined
NEWS.html:118:1 (inst/NEWS.Rd:57): Warning: <h4> anchor "fixed" already defined
NEWS.html:133:1 (inst/NEWS.Rd:65): Warning: <h4> anchor "fixed" already defined
NEWS.html:151:1 (inst/NEWS.Rd:74): Warning: <h4> anchor "fixed" already defined
NEWS.html:161:1 (inst/NEWS.Rd:78): Warning: <h4> anchor "added" already defined
checkRd: (-1) coord2dist.Rd:14: Lost braces; missing escapes or markup?
    14 | \code{n} x 4 matrix of coordinates consisting of {lat or y, lon or x} pairs for each each site
       |                                                  ^
Maintainer: ‘Donghoh Kim <donghoh.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matlab", "original", "by", "Eugene", "Brevdo;", "R", "port", "by", "Dongik"),
                      family = "Jang",
                      role = "aut"),
               person(given = "Hee-Seok",
                      family = "Oh",
                      role = "aut"),
               person(given = "Donghoh",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "donghoh.kim@gmail.com"))
as necessary.
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gertjan",
                    family = "van den Burg",
                    role = c("aut", "cre"),
                    email = "gertjanvandenburg@gmail.com")
as necessary.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  populations <arXiv:2106.06835>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) create_synthetic_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:12: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
Participant-class.html:407:1 (Participant-class.Rd:345): Warning: missing </ul> before </div>
ParticipantGroup-class.html:308:1 (ParticipantGroup-class.Rd:246): Warning: missing </ul> before </div>
centroid_3d_sq_dist.html:61:1 (centroid_3d_sq_dist.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Alix Lahuec <alix.lahuec@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alix",
                    family = "Lahuec",
                    role = c("aut", "cre"),
                    email = "alix.lahuec@mail.mcgill.ca")
as necessary.
Maintainer: ‘Melantha Wang <wang.melantha@gmail.com>’

The Description field contains
  control" <arXiv:2008.05693>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
check_relativity.html:54:1 (check_relativity.Rd:13): Warning: missing </ul> before </div>
claim_size_adj.fit.html:50:1 (claim_size_adj.fit.Rd:12): Warning: missing </ul> before </div>
covariates_relativity.html:58:1 (covariates_relativity.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Merlin Kopfmann <mghncd+cran@posteo.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Merlin",
                    family = "Kopfmann",
                    role = c("aut", "cre"),
                    email = "mghncd+cran@posteo.jp")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "fonts.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Suraj Yerramilli <surajyerramilli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suraj",
                      family = "Yerramilli",
                      role = c("aut", "cre"),
                      email = "surajyerramilli@gmail.com"),
               person(given = "Arun",
                      family = "Tangirala",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
getcov.html:47:1 (getcov.Rd:10): Warning: missing </ul> before </div>
grapes-equals-grapes.html:50:1 (grapes-equals-grapes.Rd:13): Warning: missing </ul> before </div>
idinput.html:73:1 (idinput.Rd:31): Warning: missing </ul> before </div>
inputData.html:50:1 (inputData.Rd:15): Warning: missing </ul> before </div>
inputNames-set.html:50:1 (inputNames-set.Rd:17): Warning: missing </ul> before </div>
nInputSeries.html:46:1 (nInputSeries.Rd:11): Warning: missing </ul> before </div>
optimOptions.html:66:1 (optimOptions.Rd:21): Warning: missing </ul> before </div>
residplot.html:53:1 (residplot.Rd:13): Warning: missing </ul> before </div>
time.html:51:1 (time.Rd:15): Warning: missing </ul> before </div>
Found the following files/directories:
  ‘test.csv’
Found the following HTML validation problems:
deprecated.html:49:1 (deprecated.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
slotsFunction.html:46:1 (slotsFunction.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = c("Jeff", "D."),
                      family = "Hamann",
                      role = "aut"))
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Found the following HTML validation problems:
get_stanford_sentiment.html:56:1 (get_stanford_sentiment.Rd:13): Warning: missing </ul> before </div>
rescale.html:46:1 (rescale.Rd:10): Warning: missing </ul> before </div>
simple_plot.html:69:1 (simple_plot.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘T2EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1177/009286159603000427
  File ‘T2EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘T2EQ.dissolution.profiles.hoffelder.Rd’:
    http://dx.doi.org/10.1177/009286159603000427
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Found the following HTML validation problems:
ccphate.html:65:1 (ccphate.Rd:19): Warning: missing </ul> before </div>
gbphate.html:73:1 (gbphate.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
tabit.html:50:1 (tabit.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Philip C Schouten <philip.schouten@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "C"),
                    family = "Schouten",
                    role = c("aut", "cre"),
                    email = "philip.schouten@gmail.com")
as necessary.
Found the following HTML validation problems:
cfa.tab.html:50:1 (cfa.tab.Rd:12): Warning: missing </ul> before </div>
cfa.tab.multi.html:70:1 (cfa.tab.multi.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Alon Kipnis <kipnisal@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alon",
                    family = "Kipnis",
                    role = c("aut", "cre"),
                    email = "kipnisal@stanford.edu")
as necessary.

The Description field contains
  frequency tables described in Kipnis (2019) <arXiv:1911.01208>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tableHTML_output.Rd: uiOutput
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
print.tableList.html:51:1 (print.tableList.Rd:12): Warning: missing </ul> before </div>
print.tableMatrix.html:51:1 (print.tableMatrix.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_app_link.html:54:1 (create_app_link.Rd:14): Warning: missing </ul> before </div>
tablerTabItem.html:51:1 (tablerTabItem.Rd:13): Warning: missing </ul> before </div>
tablerTabItems.html:47:1 (tablerTabItems.Rd:11): Warning: missing </ul> before </div>
tagAssert.html:61:1 (tagAssert.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
tabnet_nn.html:122:1 (tabnet_nn.Rd:57): Warning: missing </ul> before </div>
tabnet_non_tunable.html:74:1 (tabnet_non_tunable.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.
checkRd: (-1) tabmulti.Rd:68: Lost braces
    68 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
checkRd: (-1) tabmulti.svy.Rd:67: Lost braces
    67 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
Found the following HTML validation problems:
toviewer.html:47:1 (toviewer.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-updateFormat.html:52:1 (dot-updateFormat.Rd:13): Warning: missing </ul> before </div>
show-schema-method.html:47:1 (show-schema-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot_matrix.html:133:1 (plot_matrix.Rd:69): Warning: missing </ul> before </div>
Found the following HTML validation problems:
scale_fill_jpregion.html:50:1 (scale_fill_jpregion.Rd:12): Warning: missing </ul> before </div>
theme_tabularmap.html:46:1 (theme_tabularmap.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Austin Nar <austin.nar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Austin",
                    family = "Nar",
                    role = c("aut", "cre"),
                    email = "austin.nar@gmail.com")
as necessary.
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |   ^
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |                      ^
Maintainer: ‘Katarina Domijan <domijank@tcd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Katarina",
                    family = "Domijan",
                    role = c("aut", "cre"),
                    email = "domijank@tcd.ie")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following HTML validation problems:
get_display.html:47:1 (get_display.Rd:11): Warning: missing </ul> before </div>
new_fmt.html:73:1 (new_fmt.Rd:37): Warning: missing </ul> before </div>
tab_get_wrapped_dimensions.html:56:1 (tab_get_wrapped_dimensions.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Eric Brown <eb@ericebrown.com>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/tacmagic
which should likely be
  https://github.com/ropensci/tacmagic/issues
instead.
Found the following HTML validation problems:
get_fun.html:46:1 (get_fun.Rd:10): Warning: missing </ul> before </div>
seq_pal.html:51:1 (seq_pal.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
AB.html:64:1 (AB.Rd:20): Warning: missing </ul> before </div>
abundance_dataframe.html:62:1 (abundance_dataframe.Rd:19): Warning: missing </ul> before </div>
check_parameters.html:173:1 (check_parameters.Rd:96): Warning: missing </ul> before </div>
filter_na_empty.html:56:1 (filter_na_empty.Rd:16): Warning: missing </ul> before </div>
generate_stat_per_rand.html:75:1 (generate_stat_per_rand.Rd:31): Warning: missing </ul> before </div>
get_abundance_df.html:85:1 (get_abundance_df.Rd:37): Warning: missing </ul> before </div>
get_weighted_mnts.html:87:1 (get_weighted_mnts.Rd:39): Warning: missing </ul> before </div>
load_depending_on_format.html:55:1 (load_depending_on_format.Rd:15): Warning: missing </ul> before </div>
load_tad_table.html:77:1 (load_tad_table.Rd:31): Warning: missing </ul> before </div>
save_obs_df.html:75:1 (save_obs_df.Rd:31): Warning: missing </ul> before </div>
skr_ses_dataframe.html:48:1 (skr_ses_dataframe.Rd:12): Warning: missing </ul> before </div>
stat_per_obs_dataframe.html:86:1 (stat_per_obs_dataframe.Rd:31): Warning: missing </ul> before </div>
stat_per_rand_dataframe.html:69:1 (stat_per_rand_dataframe.Rd:22): Warning: missing </ul> before </div>
trait.html:55:1 (trait.Rd:15): Warning: missing </ul> before </div>
weighted_moments_dataframe.html:48:1 (weighted_moments_dataframe.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Li-Hsiang Lin <llin79@gatech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Li-Hsiang",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "llin79@gatech.edu"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TAG.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plott.R’ ‘read_cats_csv.R’