Found the following HTML validation problems:
optimal_bias_generic.html:84:1 (optimal_bias_generic.Rd:36): Warning: missing </ul> before </div>
optimal_binary_generic.html:205:1 (optimal_binary_generic.Rd:111): Warning: missing </ul> before </div>
optimal_generic.html:86:1 (optimal_generic.Rd:30): Warning: missing </ul> before </div>
optimal_multiarm_generic.html:128:1 (optimal_multiarm_generic.Rd:60): Warning: missing </ul> before </div>
optimal_normal_generic.html:209:1 (optimal_normal_generic.Rd:113): Warning: missing </ul> before </div>
optimal_tte_generic.html:200:1 (optimal_tte_generic.Rd:104): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_mode.html:50:1 (get_mode.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cdmDoc.html:40:1 (cdmDoc.Rd:7): Warning: missing </ul> before </div>
censorDateDoc.html:41:1 (censorDateDoc.Rd:8): Warning: missing </ul> before </div>
cohortDoc.html:40:1 (cohortDoc.Rd:7): Warning: missing </ul> before </div>
cohortIdDoc.html:41:1 (cohortIdDoc.Rd:8): Warning: missing </ul> before </div>
compNameDoc.html:41:1 (compNameDoc.Rd:8): Warning: missing </ul> before </div>
conceptSetDoc.html:40:1 (conceptSetDoc.Rd:7): Warning: missing </ul> before </div>
daysPrescribedDoc.html:41:1 (daysPrescribedDoc.Rd:8): Warning: missing </ul> before </div>
drugUtilisationDoc.html:94:1 (drugUtilisationDoc.Rd:40): Warning: missing </ul> before </div>
gapEraDoc.html:41:1 (gapEraDoc.Rd:8): Warning: missing </ul> before </div>
indexDateDoc.html:41:1 (indexDateDoc.Rd:8): Warning: missing </ul> before </div>
ingredientConceptIdDoc.html:41:1 (ingredientConceptIdDoc.Rd:8): Warning: missing </ul> before </div>
nameStyleDoc.html:40:1 (nameStyleDoc.Rd:7): Warning: missing </ul> before </div>
newNameDoc.html:41:1 (newNameDoc.Rd:8): Warning: missing </ul> before </div>
numberExposuresDoc.html:41:1 (numberExposuresDoc.Rd:8): Warning: missing </ul> before </div>
plotDoc.html:47:1 (plotDoc.Rd:12): Warning: missing </ul> before </div>
restrictIncidentDoc.html:42:1 (restrictIncidentDoc.Rd:9): Warning: missing </ul> before </div>
resultDoc.html:40:1 (resultDoc.Rd:7): Warning: missing </ul> before </div>
strataDoc.html:41:1 (strataDoc.Rd:8): Warning: missing </ul> before </div>
tableDoc.html:62:1 (tableDoc.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ravi",
                      family = "Varadhan",
                      role = c("aut", "cre"),
                      email = "ravi.varadhan@jhu.edu"),
               person(given = "Wenliang",
                      family = "Yao",
                      role = "aut"))
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘additional_topics.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘additional_topics.Rmd’

--- re-building ‘end_to_end_workflow.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘end_to_end_workflow.rmd’

--- re-building ‘fastkm.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘fastkm.Rmd’

--- re-building ‘no_empty_drops.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘no_empty_drops.Rmd’

--- re-building ‘understanding_dsb.Rmd’ using rmarkdown

Quitting from understanding_dsb.Rmd:75-104 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'understanding_dsb.Rmd' failed with diagnostics:
Problem while computing stat.
ℹ Error occurred in the 2nd layer.
Caused by error in `compute_layer()`:
! The package "MASS" is required for calculating 2D density.
--- failed re-building ‘understanding_dsb.Rmd’

SUMMARY: processing the following file failed:
  ‘understanding_dsb.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘dsdp/libs/dsdp.so’:
  Found non-API call to R: ‘Rf_allocSExp’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
DSLoginBuilder.html:217:1 (DSLoginBuilder.Rd:125): Warning: missing </ul> before </div>
DSLoginBuilder.html:113:1 (DSLoginBuilder.Rd:55): Warning: <h5> anchor "Usage" already defined
DSLoginBuilder.html:130:1 (DSLoginBuilder.Rd:70): Warning: <h5> anchor "Arguments" already defined
DSLoginBuilder.html:171:1 (DSLoginBuilder.Rd:101): Warning: <h5> anchor "Usage" already defined
DSLoginBuilder.html:177:1 (DSLoginBuilder.Rd:105): Warning: <h5> anchor "Returns" already defined
DSLoginBuilder.html:194:1 (DSLoginBuilder.Rd:114): Warning: <h5> anchor "Usage" already defined
DSLoginBuilder.html:200:1 (DSLoginBuilder.Rd:118): Warning: <h5> anchor "Arguments" already defined
datashield.logout.html:50:1 (datashield.logout.Rd:12): Warning: missing </ul> before </div>
datashield.pkg_check.html:64:1 (datashield.pkg_check.Rd:22): Warning: missing </ul> before </div>
datashield.rm.html:50:1 (datashield.rm.Rd:12): Warning: missing </ul> before </div>
datashield.symbols.html:46:1 (datashield.symbols.Rd:10): Warning: missing </ul> before </div>
datashield.workspace_restore.html:52:1 (datashield.workspace_restore.Rd:12): Warning: missing </ul> before </div>
datashield.workspace_rm.html:50:1 (datashield.workspace_rm.Rd:12): Warning: missing </ul> before </div>
datashield.workspace_save.html:51:1 (datashield.workspace_save.Rd:12): Warning: missing </ul> before </div>
datashield.workspaces.html:46:1 (datashield.workspaces.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_data.html:46:1 (get_data.Rd:10): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
dsAggregate-ArmadilloConnection-method.html:60:1 (dsAggregate-ArmadilloConnection-method.Rd:17): Warning: missing </ul> before </div>
dsRmSymbol-ArmadilloConnection-method.html:53:1 (dsRmSymbol-ArmadilloConnection-method.Rd:12): Warning: missing </ul> before </div>
dsRmWorkspace-ArmadilloConnection-method.html:51:1 (dsRmWorkspace-ArmadilloConnection-method.Rd:12): Warning: missing </ul> before </div>
dsSaveWorkspace-ArmadilloConnection-method.html:51:1 (dsSaveWorkspace-ArmadilloConnection-method.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dsm.cor.html:96:1 (dsm.cor.Rd:44): Warning: missing </ul> before </div>
dsm.var.gam.html:76:1 (dsm.var.gam.Rd:32): Warning: missing </ul> before </div>
dsm.var.movblk.html:104:1 (dsm.var.movblk.Rd:50): Warning: missing </ul> before </div>
dsm.var.prop.html:76:1 (dsm.var.prop.Rd:32): Warning: missing </ul> before </div>
rqgam.check.html:51:1 (rqgam.check.Rd:13): Warning: missing </ul> before </div>
vis.concurvity.html:50:1 (vis.concurvity.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-datashield.command.html:54:1 (dot-datashield.command.Rd:14): Warning: missing </ul> before </div>
dot-datashield.command_result.html:55:1 (dot-datashield.command_result.Rd:14): Warning: missing </ul> before </div>
dot-datashield.command_rm.html:50:1 (dot-datashield.command_rm.Rd:12): Warning: missing </ul> before </div>
dot-datashield.commands.html:46:1 (dot-datashield.commands.Rd:10): Warning: missing </ul> before </div>
dot-datashield.commands_rm.html:46:1 (dot-datashield.commands_rm.Rd:10): Warning: missing </ul> before </div>
dot-datashield.methods.html:50:1 (dot-datashield.methods.Rd:12): Warning: missing </ul> before </div>
dot-datashield.profiles.html:46:1 (dot-datashield.profiles.Rd:10): Warning: missing </ul> before </div>
dot-datashield.rm.html:50:1 (dot-datashield.rm.Rd:12): Warning: missing </ul> before </div>
dot-datashield.symbols.html:46:1 (dot-datashield.symbols.Rd:10): Warning: missing </ul> before </div>
dot-datashield.workspace_restore.html:50:1 (dot-datashield.workspace_restore.Rd:12): Warning: missing </ul> before </div>
dot-datashield.workspace_rm.html:50:1 (dot-datashield.workspace_rm.Rd:12): Warning: missing </ul> before </div>
dot-datashield.workspace_save.html:50:1 (dot-datashield.workspace_save.Rd:12): Warning: missing </ul> before </div>
dot-datashield.workspaces.html:46:1 (dot-datashield.workspaces.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Vathy M. Kamulete <vathymut@gmail.com>’

The Description field contains
  <arXiv:1908.04000>. Modern notions of outlyingness such as trust scores
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Found the following HTML validation problems:
getARpXmat.html:54:1 (getARpXmat.Rd:14): Warning: missing </ul> before </div>
initCholReg_spam.html:60:1 (initCholReg_spam.Rd:16): Warning: missing </ul> before </div>
initChol_spam.html:52:1 (initChol_spam.Rd:12): Warning: missing </ul> before </div>
sample_mat_c.html:74:1 (sample_mat_c.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emmanuel",
                    family = "Arnhold",
                    role = c("aut", "cre"),
                    email = "emmanuelarnhold@yahoo.com.br")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michael Nelson <michael.nelson.r.pkg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Nelson",
                    role = c("aut", "cre"),
                    email = "michael.nelson.r.pkg@gmail.com")
as necessary.
Maintainer: ‘Phillip D. Alderman <phillip.alderman@okstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Phillip", "D."),
                    family = "Alderman",
                    role = c("aut", "cre"),
                    email = "phillip.alderman@okstate.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘v_fmt_to_type.R’
Found the following HTML validation problems:
calc_AMP.html:48:1 (calc_AMP.Rd:12): Warning: missing </ul> before </div>
calc_TAV.html:48:1 (calc_TAV.Rd:12): Warning: missing </ul> before </div>
clear_output.html:52:1 (clear_output.Rd:13): Warning: missing </ul> before </div>
read_filex_multiple.html:82:1 (read_filex_multiple.Rd:36): Warning: missing </ul> before </div>
write_dssbatch.data.frame.html:58:1 (write_dssbatch.data.frame.Rd:17): Warning: missing </ul> before </div>
write_dssbatch.default.html:58:1 (write_dssbatch.default.Rd:17): Warning: missing </ul> before </div>
write_dssbatch.tbl_df.html:58:1 (write_dssbatch.tbl_df.Rd:17): Warning: missing </ul> before </div>
write_filex.html:61:1 (write_filex.Rd:19): Warning: missing </ul> before </div>
write_wth.html:120:1 (write_wth.Rd:58): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.Coverage.Grid-methods.html:56:1 (plot.Coverage.Grid-methods.Rd:15): Warning: missing </ul> before </div>
plot.Survey.Design-methods.html:70:1 (plot.Survey.Design-methods.Rd:21): Warning: missing </ul> before </div>
plot.Transect-methods.html:60:1 (plot.Transect-methods.Rd:19): Warning: missing </ul> before </div>
show.Survey.Design-methods.html:47:1 (show.Survey.Design-methods.Rd:10): Warning: missing </ul> before </div>
show.Transect-methods.html:52:1 (show.Transect-methods.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Gentry White <gentry.white@qut.edu.au>’

The Description field contains
  in G. White, D. Sun, P. Speckman (2019) <arXiv:1906.05575>. The basic
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DSSP.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Zhibing He <zhibingh@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhibing",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zhibingh@asu.edu")
as necessary.
Maintainer: ‘Seunggeun (Shawn) Lee <leeshawn@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
                      comment = "Shawn"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "leeshawn@umich.edu",
                      comment = "Shawn"))
as necessary.
Found the following HTML validation problems:
combine_Y_refs.html:66:1 (combine_Y_refs.Rd:26): Warning: missing </ul> before </div>
get_gamma.html:50:1 (get_gamma.Rd:14): Warning: missing </ul> before </div>
process_markers.html:114:1 (process_markers.Rd:57): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_d3_data-DE-method.html:51:1 (as_d3_data-DE-method.Rd:13): Warning: missing </ul> before </div>
plot-DE-missing-method.html:60:1 (plot-DE-missing-method.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Zhicheng Du <dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
checkRd: (-1) DTDAcif.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Carla Moreira <carlamgmm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carla",
                      family = "Moreira",
                      role = c("aut", "cre"),
                      email = "carlamgmm@gmail.com"),
               person(given = "Jacobo",
                      family = "de Uña-Álvarez",
                      role = "aut"),
               person(given = "Rosa",
                      family = "Crujeiras",
                      role = "aut"))
as necessary.
checkRd: (-1) efron.petrosian.Rd:22: Lost braces
    22 |   \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                               ^
checkRd: (-1) lynden.Rd:21: Lost braces
    21 |    \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                                ^
checkRd: (-1) shen.Rd:24: Lost braces
    24 |   \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                               ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DtD.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘William Nicholson<wbnicholson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Nicholson",
                    role = c("aut", "cre"),
                    email = "wbnicholson@gmail.com")
as necessary.
checkRd: (-1) applied_crm.Rd:64: Lost braces; missing escapes or markup?
    64 | The empiric model is specified as F(d, beta) = d^{exp(beta)}. The logistic model is
       |                                                  ^
Maintainer: ‘Taha Zaghdoudi <zedtaha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Taha",
                    family = "Zaghdoudi",
                    role = c("aut", "cre"),
                    email = "zedtaha@gmail.com")
as necessary.
checkRd: (-1) Mena.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Yuan Chen <irene.yuan.chen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuan",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "irene.yuan.chen@gmail.com"),
               person(given = "Ying",
                      family = "Liu",
                      role = "aut"),
               person(given = "Donglin",
                      family = "Zeng",
                      role = "aut"),
               person(given = "Yuanjia",
                      family = "Wang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
params.html:139:1 (params.Rd:60): Warning: missing </ul> before </div>
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Leonardo",
                      family = "Silvestri",
                      role = "aut"))
as necessary.
Maintainer: ‘Emilie Poisson-Caillault <emilie.poisson@univ-littoral.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Camille",
                      family = "Dezecache",
                      role = "aut"),
               person(given = c("T.", "T.", "Hong"),
                      family = "Phan",
                      role = "aut"),
               person(given = "Emilie",
                      family = "Poisson-Caillault",
                      role = c("aut", "cre"),
                      email = "emilie.poisson@univ-littoral.fr"))
as necessary.
Maintainer: ‘Alexis Sarda <alexis.sarda@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexis",
                      family = "Sarda-Espinosa",
                      role = "aut"),
               person(given = "Alexis",
                      family = "Sarda",
                      role = "cre",
                      email = "alexis.sarda@gmail.com"))
as necessary.
Found the following HTML validation problems:
DistmatLowerTriangular-generics.html:66:1 (DistmatLowerTriangular-generics.Rd:24): Warning: missing </ul> before </div>
explore__plot.html:54:1 (explore__plot.Rd:14): Warning: missing </ul> before </div>
parse_input.html:50:1 (parse_input.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Toni Giorgino <toni.giorgino@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘POISSON-CAILLAULT Emilie <emilie.poisson@univ-littoral.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "DEZECACHE",
                      family = "Camille",
                      role = "aut"),
               person(given = c("PHAN", "Thi", "Thu"),
                      family = "Hong",
                      role = "aut"),
               person(given = "POISSON-CAILLAULT",
                      family = "Emilie",
                      role = c("aut", "cre"),
                      email = "emilie.poisson@univ-littoral.fr"))
as necessary.
checkRd: (-1) DTWUMI_1gap_imputation.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
duckdb_secrets.html:100:1 (duckdb_secrets.Rd:44): Warning: missing </ul> before </div>
to_geojson.html:60:1 (to_geojson.Rd:18): Warning: missing </ul> before </div>
to_json.html:71:1 (to_json.Rd:26): Warning: missing </ul> before </div>
Found the following significant warnings:
  /usr/include/c++/15/bits/move.h:235:11: warning: ‘((std::remove_reference<long unsigned int&>::type*)this)[2]’ is used uninitialized [-Wuninitialized]
  /usr/include/c++/15/bits/move.h:235:11: warning: ‘((std::remove_reference<long int&>::type*)this)[2]’ is used uninitialized [-Wuninitialized]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/duckdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following HTML validation problems:
duckdb_connection-class.html:176:1 (duckdb_connection-class.Rd:138): Warning: missing </ul> before </div>
duckdb_driver-class.html:64:1 (duckdb_driver-class.Rd:32): Warning: missing </ul> before </div>
duckdb_result-class.html:112:1 (duckdb_result-class.Rd:83): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘scale_duke_color_discrete.Rd’ ‘scale_duke_fill_discrete.Rd’
Running ‘testthat.R’ [4s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(duke)
  > 
  > test_check("duke")
  New names:
  * `colour` -> `colour...1`
  * `colour` -> `colour...4`
  [ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-scale_duke_fill_discrete.R:36:3'): appropriate fill for factors over 8-levels ──
  ggplot2::layer_data(p3)$fill[9] (`actual`) not equal to "#B5B5B5" (`expected`).
  
  `actual`:   NA       
  `expected`: "#B5B5B5"
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test-scale_duke_fill_discrete.R:36:3
   2. │ └─testthat:::expect_condition_matching(...)
   3. │   └─testthat:::quasi_capture(...)
   4. │     ├─testthat (local) .capture(...)
   5. │     │ └─base::withCallingHandlers(...)
   6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   7. └─testthat::expect_equal(ggplot2::layer_data(p3)$fill[9], "#B5B5B5")
  
  [ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Foo Cheung <foocheung@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Foo",
                    family = "Cheung",
                    role = c("aut", "cre"),
                    email = "foocheung@yahoo.com")
as necessary.
Maintainer: ‘Michel Ballings <michel.ballings@GMail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexis Dinno <alexis.dinno@pdx.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexis",
                    family = "Dinno",
                    role = c("aut", "cre"),
                    email = "alexis.dinno@pdx.edu")
as necessary.
Found the following HTML validation problems:
initialize-Counts-method.html:55:1 (initialize-Counts-method.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Juan Julián Merelo-Guervós <jjmerelo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Julián"),
                    family = "Merelo-Guervós",
                    role = c("aut", "cre"),
                    email = "jjmerelo@gmail.com")
as necessary.
Maintainer: ‘Russ Hyde <russ.hyde.data@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Russ",
                      family = "Hyde",
                      role = c("aut", "cre"),
                      email = "russ.hyde.data@gmail.com"),
               person(given = c("University", "of"),
                      family = "Glasgow",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
as.data.frame.dups.html:51:1 (as.data.frame.dups.Rd:12): Warning: missing </ul> before </div>
as_tibble.dups.html:52:1 (as_tibble.dups.Rd:13): Warning: missing </ul> before </div>
print.dups.html:51:1 (print.dups.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
psa_data.html:62:1 (psa_data.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘dvmisc.Rd’:
    https://doi.org/10.7287/peerj.preprints.3188v1
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugo",
                    family = "Gasca-Aragon",
                    role = c("aut", "cre"),
                    email = "hugo_gasca_aragon@hotmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘dwlm.Rd’:
    https://doi.org/10.1119/1.15963
    https://doi.org/10.1119/1.17044
    https://doi.org/10.1039/AN9871200377
Maintainer: ‘Daniel Dalthorp <ddalthorp@protonmail.com>’

The Description field contains
  mortality, following Dalthorp, et al. (2022) <arXiv:2201.10064>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bonne J.H. Zijlstra <B.J.H.Zijlstra@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Bonne", "J.H."),
                    family = "Zijlstra",
                    role = c("aut", "cre"),
                    email = "B.J.H.Zijlstra@uva.nl")
as necessary.
Found the following HTML validation problems:
delete_space.html:46:1 (delete_space.Rd:10): Warning: missing </ul> before </div>
hgt_to_dpt.html:46:1 (hgt_to_dpt.Rd:10): Warning: missing </ul> before </div>
run_iteration.html:53:1 (run_iteration.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dygraph-shiny.html:68:1 (dygraph-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Maintainer: ‘Flavian Tschurr <flavian.tschurr@usys.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Flavian",
                    family = "Tschurr",
                    role = c("aut", "cre"),
                    email = "flavian.tschurr@usys.ethz.ch")
as necessary.
Maintainer: ‘Kosei Abe <mail@recyclebin.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kosei",
                      family = "Abe",
                      role = c("aut", "cre"),
                      email = "mail@recyclebin.jp"),
               person(given = "Richard",
                      family = "Cotton",
                      role = "ctb"))
as necessary.
Found the following HTML validation problems:
getNames.html:50:1 (getNames.Rd:12): Warning: missing </ul> before </div>
isVariableName.html:46:1 (isVariableName.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Matteo Marcantonio <marcantoniomatteo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/mattmar/dynamAedes
which should likely be
  https://github.com/mattmar/dynamAedes/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cfaHB.Rd: lavaan, cfa, model.syntax
  cfaOne.Rd: lavaan, cfa, model.syntax
  equivTest.Rd: lavaan
  exactFit.Rd: lavaan, cfa, model.syntax
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "Peter.Langfelder@gmail.com"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut",
                      email = "binzhang.ucla@gmail.com"),
               person(given = c("with", "contributions", "from", "Steve"),
                      family = "Horvath",
                      role = "aut",
                      email = "SHorvath@mednet.ucla.edu"))
as necessary.
Found the following HTML validation problems:
get_algorithm.html:56:1 (get_algorithm.Rd:20): Warning: missing </ul> before </div>
get_diagnostics.html:56:1 (get_diagnostics.Rd:20): Warning: missing </ul> before </div>
get_draws.html:60:1 (get_draws.Rd:22): Warning: missing </ul> before </div>
get_elapsed_time.html:56:1 (get_elapsed_time.Rd:20): Warning: missing </ul> before </div>
get_max_treedepth.html:56:1 (get_max_treedepth.Rd:20): Warning: missing </ul> before </div>
get_model_code.html:56:1 (get_model_code.Rd:20): Warning: missing </ul> before </div>
get_nchains.html:56:1 (get_nchains.Rd:20): Warning: missing </ul> before </div>
get_ndraws.html:56:1 (get_ndraws.Rd:20): Warning: missing </ul> before </div>
get_pars_oi.html:56:1 (get_pars_oi.Rd:20): Warning: missing </ul> before </div>
mice.impute.lag.html:79:1 (mice.impute.lag.Rd:29): Warning: missing </ul> before </div>
mice.impute.lead.html:79:1 (mice.impute.lead.Rd:29): Warning: missing </ul> before </div>
Maintainer: ‘Eli D. Strauss <straussed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eli", "D."),
                    family = "Strauss",
                    role = c("aut", "cre"),
                    email = "straussed@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) dyadic_similarity.Rd:27: Lost braces; missing escapes or markup?
    27 |      For example, the order {a, b, c} implies that a > b, a  > c, and b > c.
       |                             ^
Maintainer: ‘Xuechan Li <xuechanli0530@gmail.com>’

The Description field contains
  <arXiv:1906.07757v2> and Li, Sung and Xie (2021) <arXiv:2103.11085v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Yves Rozenholc <yves.rozenholc@u-paris.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yves",
                      family = "Rozenholc",
                      role = c("aut", "cre"),
                      email = "yves.rozenholc@u-paris.fr",
                      comment = "UR7537, Univ. Paris Cité"),
               person(given = "Christophe",
                      family = "Pouzat",
                      role = "aut",
                      comment = "IRMA, CNRS UMR 7501"),
               person(given = "Tiffany",
                      family = "Lieury",
                      role = "aut",
                      comment = "Cerebral Physiology lab, Univ. Paris Descartes"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Maintainer: ‘Jiaqi Tang <1107967177@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiaqi",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "1107967177@qq.com")
as necessary.
Found the following HTML validation problems:
anonymization.html:58:1 (anonymization.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
    57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
       |                          ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
    57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
       |                                                     ^
checkRd: (-1) new_log_level.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{log_style}{is a {crayon::style()} that will colorize
       |                       ^
checkRd: (-1) new_log_level.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{msg_style}{is a {crayon::style()} style that will gray scale the
       |                       ^
checkRd: (-1) sys_context.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{"sysname"} : {The operating system name.}
       |                    ^
checkRd: (-1) sys_context.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{"release"} : {The OS release.}
       |                    ^
checkRd: (-1) sys_context.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{"version"} : {The OS version.}
       |                    ^
checkRd: (-1) sys_context.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{"nodename"} : {A name by which the machine is known on the network (if any).}
       |                     ^
checkRd: (-1) sys_context.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{"machine"} : {A concise description of the hardware, often the CPU type.}
       |                    ^
checkRd: (-1) sys_context.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{"login"} : {The user's login name, or "unknown" if it cannot be ascertained.}
       |                  ^
checkRd: (-1) sys_context.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{"user"} : {The name of the real user ID, or "unknown" if it cannot be ascertained.}
       |                 ^
checkRd: (-1) sys_context.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{"r-ver"} : {R Version in (major).(minor) format.}
       |                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  new_fmt_layout.Rd: crayon
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
LogDispatch.html:91:1 (LogDispatch.Rd:52): Warning: <h5> anchor "Usage" already defined
dot-onAttach.html:53:1 (dot-onAttach.Rd:14): Warning: missing </ul> before </div>
dot-onDetach.html:49:1 (dot-onDetach.Rd:12): Warning: missing </ul> before </div>
dot-onLoad.html:53:1 (dot-onLoad.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Amirhossein Jalali <amir.jalali@ul.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amirhossein",
                      family = "Jalali",
                      role = c("aut", "cre"),
                      email = "amir.jalali@ul.ie"),
               person(given = "Davood",
                      family = "Roshan",
                      role = "aut"),
               person(given = "Alberto",
                      family = "Alvarez-Iglesias",
                      role = "aut"),
               person(given = "John",
                      family = "Newell",
                      role = "aut"))
as necessary.
Maintainer: ‘Taha Zaghdoudi <zedtaha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Taha",
                    family = "Zaghdoudi",
                    role = c("aut", "cre"),
                    email = "zedtaha@gmail.com")
as necessary.
checkRd: (-1) Produc.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:22: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
dpd.formula.html:68:1 (dpd.formula.Rd:21): Warning: missing </ul> before </div>
summary.dpd.html:51:1 (summary.dpd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Found the following HTML validation problems:
collapse_set.html:58:1 (collapse_set.Rd:16): Warning: missing </ul> before </div>
get_description.html:50:1 (get_description.Rd:12): Warning: missing </ul> before </div>
range_parameter.html:73:1 (range_parameter.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Hein Putter <H.Putter@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hein",
                    family = "Putter",
                    role = c("aut", "cre"),
                    email = "h.putter@lumc.nl")
as necessary.
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:40: Escaped LaTeX specials: \&
Maintainer: ‘Thomas Mailund <mailund@birc.au.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘M. Leeds <markleeds2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "G.",
                      family = "Grothendieck",
                      role = "aut"),
               person(given = "M.",
                      family = "Leeds",
                      role = "cre",
                      email = "markleeds2@gmail.com"))
as necessary.
Found the following HTML validation problems:
names-dynrCook-method.html:47:1 (names-dynrCook-method.Rd:11): Warning: missing </ul> before </div>
names-dynrModel-method.html:47:1 (names-dynrModel-method.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
bayesCoxMcmc.html:61:1 (bayesCoxMcmc.Rd:20): Warning: missing </ul> before </div>
is.bayesCox.html:46:1 (is.bayesCox.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Oscar Garcia <garcia@dasometrics.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
deprecated.html:52:1 (deprecated.Rd:15): Warning: missing </ul> before </div>
read_h5.html:60:1 (read_h5.Rd:23): Warning: missing </ul> before </div>
recent_news.html:54:1 (recent_news.Rd:14): Warning: missing </ul> before </div>
switch_devel.html:54:1 (switch_devel.Rd:18): Warning: missing </ul> before </div>
test_h5_installation.html:48:1 (test_h5_installation.Rd:13): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Found the following HTML validation problems:
convert_definition.html:46:1 (convert_definition.Rd:10): Warning: missing </ul> before </div>
dot-method_process_definition.html:50:1 (dot-method_process_definition.Rd:12): Warning: missing </ul> before </div>
get_default_parameters.html:46:1 (get_default_parameters.Rd:10): Warning: missing </ul> before </div>
group_from_trajectory.html:52:1 (group_from_trajectory.Rd:16): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘getConstraintTests.R’ ‘getInvarCompTable.R’ ‘outputConstraintTab.R’
    ‘outputInvarCompTab.R’
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DySS.Rcheck/00install.out’ for details.
* used Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) monitor_long_1d.Rd:33: Lost braces
    33 | If \code{side="upward"}{apply control charts that aim to detect upward shifts.} \cr
       |                        ^
checkRd: (-1) monitor_long_1d.Rd:34: Lost braces
    34 | If \code{side="downward"}{apply control charts that aim to detect downward shifts.} \cr
       |                          ^
checkRd: (-1) monitor_long_1d.Rd:35: Lost braces
    35 | If \code{side="both"}{apply control charts that aim to detect shifts in both sides}}
       |                      ^
checkRd: (-1) monitor_long_1d.Rd:38: Lost braces
    38 | If \code{chart="CUSUM"}{apply CUSUM charts.} \cr
       |                        ^
checkRd: (-1) monitor_long_1d.Rd:39: Lost braces
    39 | If \code{chart="EWMA"}{apply EWMA charts.}}
       |                       ^
Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:123-125: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:126-133: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:134-135: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:136-137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:163-165: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:166-173: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.earlyR.Rd:34-46: Lost braces
    34 | if (require(incidence)) {
       |                         ^
Maintainer: ‘Ehouarn Le Faou <ehouarnlefaou@orange.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ehouarn",
                    family = "Le Faou",
                    role = c("aut", "cre"),
                    email = "ehouarnlefaou@orange.fr")
as necessary.
Maintainer: ‘Nicolas Dumoulin <nicolas.dumoulin@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Franck",
                      family = "Jabot",
                      role = "aut"),
               person(given = "Thierry",
                      family = "Faure",
                      role = "aut"),
               person(given = "Nicolas",
                      family = "Dumoulin",
                      role = c("aut", "cre"),
                      email = "nicolas.dumoulin@inrae.fr"),
               person(given = "Carlo",
                      family = "Albert.",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
manip_get_ggplot_data.html:46:1 (manip_get_ggplot_data.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plottingfunctions.bgms.R’ ‘plottingfunctions.easybgm.R’
Running ‘testthat.R’ [406s/155s]
Running R code in ‘testthat.R’ had CPU time 2.6 times elapsed time
Found the following HTML validation problems:
bgm_extract.html:50:1 (bgm_extract.Rd:12): Warning: missing </ul> before </div>
bgm_fit.html:50:1 (bgm_fit.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
format.estimate.html:71:1 (format.estimate.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
'library' or 'require' call not declared from: ‘lavaan’
Maintainer: ‘Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emmanuel",
                    family = "Arnhold",
                    role = c("aut", "cre"),
                    email = "emmanuelarnhold@yahoo.com.br")
as necessary.
Found the following HTML validation problems:
install_package.html:48:1 (install_package.Rd:11): Warning: missing </ul> before </div>
is.package_obj.html:48:1 (is.package_obj.Rd:11): Warning: missing </ul> before </div>
load_package.html:48:1 (load_package.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Aaron McGarvey <amcgarvey271@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "McGarvey",
                    role = c("aut", "cre"),
                    email = "amcgarvey271@gmail.com")
as necessary.
Found the following HTML validation problems:
easyPubMed-print.html:47:1 (easyPubMed-print.Rd:10): Warning: missing </ul> before </div>
easyPubMed-show.html:47:1 (easyPubMed-show.Rd:10): Warning: missing </ul> before </div>
fetchEPMData.html:55:1 (fetchEPMData.Rd:17): Warning: missing </ul> before </div>
getEPMData.html:49:1 (getEPMData.Rd:13): Warning: missing </ul> before </div>
getEPMJobList.html:55:1 (getEPMJobList.Rd:13): Warning: missing </ul> before </div>
getEPMMeta.html:49:1 (getEPMMeta.Rd:13): Warning: missing </ul> before </div>
getEPMMisc.html:49:1 (getEPMMisc.Rd:13): Warning: missing </ul> before </div>
getEPMQuery.html:49:1 (getEPMQuery.Rd:13): Warning: missing </ul> before </div>
getEPMRaw.html:49:1 (getEPMRaw.Rd:13): Warning: missing </ul> before </div>
getEPMUilist.html:50:1 (getEPMUilist.Rd:13): Warning: missing </ul> before </div>
parseEPMData.html:56:1 (parseEPMData.Rd:17): Warning: missing </ul> before </div>
setEPMData.html:53:1 (setEPMData.Rd:15): Warning: missing </ul> before </div>
setEPMJobList.html:60:1 (setEPMJobList.Rd:16): Warning: missing </ul> before </div>
setEPMMeta.html:53:1 (setEPMMeta.Rd:15): Warning: missing </ul> before </div>
setEPMMisc.html:54:1 (setEPMMisc.Rd:15): Warning: missing </ul> before </div>
setEPMQuery.html:55:1 (setEPMQuery.Rd:16): Warning: missing </ul> before </div>
setEPMRaw.html:54:1 (setEPMRaw.Rd:15): Warning: missing </ul> before </div>
setEPMUilist.html:54:1 (setEPMUilist.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ensure_dir.html:46:1 (ensure_dir.Rd:10): Warning: missing </ul> before </div>
write_text.html:54:1 (write_text.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emmanuel",
                    family = "Arnhold",
                    role = c("aut", "cre"),
                    email = "emmanuelarnhold@yahoo.com.br")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yuting Dai <forlynna@sjtu.edu.cn>’

Found the following (possibly) invalid file URI:
  URI: forlynna@sjtu.edu.cn
    From: man/easySVG.Rd
Found the following HTML validation problems:
changearg.html:52:1 (changearg.Rd:12): Warning: missing </ul> before </div>
weisheimer.html:80:1 (weisheimer.Rd:31): Warning: missing </ul> before </div>
Found the following HTML validation problems:
insertVariable.html:55:1 (insertVariable.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Jens Hainmueller <jhain@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jens",
                    family = "Hainmueller",
                    role = c("aut", "cre"),
                    email = "jhain@stanford.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ebase_plot.R’ ‘ebase_prep.R’
Maintainer: ‘Michal Kolesár <kolesarmi@googlemail.com>’

The Description field contains
  and Plagborg-Møller (2020) <arXiv:2004.03448>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrea Rau <andrea.rau@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Rau",
                    role = c("aut", "cre"),
                    email = "andrea.rau@inra.fr")
as necessary.
Maintainer: ‘Gongyi Huang<53hgy@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Na",
                      family = "You",
                      role = "aut",
                      email = "youn@mail.sysu.edu.cn"),
               person(given = "Gongyi",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "53hgy@163.com"))
as necessary.
Found the following HTML validation problems:
ebirdst-defunct.html:95:1 (ebirdst-defunct.Rd:68): Warning: missing </ul> before </div>
Maintainer: ‘"Hsiang Hao, Chen" <kbman1101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hsiang",
                      family = "Hao",
                      role = "aut"),
               person(family = "Chen",
                      role = "aut"),
               person(given = "\"Hsiang",
                      family = "Hao",
                      role = "cre"),
               person(family = "Chen\"",
                      role = "cre",
                      email = "kbman1101@gmail.com"))
as necessary.
Found the following HTML validation problems:
coef.ebnm.html:51:1 (coef.ebnm.Rd:12): Warning: missing </ul> before </div>
fitted.ebnm.html:53:1 (fitted.ebnm.Rd:12): Warning: missing </ul> before </div>
print.ebnm.html:55:1 (print.ebnm.Rd:14): Warning: missing </ul> before </div>
print.summary.ebnm.html:55:1 (print.summary.ebnm.Rd:14): Warning: missing </ul> before </div>
residuals.ebnm.html:52:1 (residuals.ebnm.Rd:12): Warning: missing </ul> before </div>
vcov.ebnm.html:51:1 (vcov.ebnm.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Shuang Song <song-s19@mails.tsinghua.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuang",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "song-s19@mails.tsinghua.edu.cn"),
               person(given = "Wei",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Lin",
                      family = "Hou",
                      role = "aut"),
               person(given = "Hongyu",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Francisco Rosales <francisco.rosales-marticorena@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francisco",
                      family = "Rosales",
                      role = c("aut", "cre"),
                      email = "francisco.rosales-marticorena@protonmail.com"),
               person(given = "Tatyana",
                      family = "Krivobokova",
                      role = "aut"),
               person(given = "Paulo",
                      family = "Serra.",
                      role = "aut"))
as necessary.

The Description field contains
  and "Klockmann" (2021) <arXiv:1812.06948> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Garritt L. Page <page@stat.byu.edu>’

The Description field contains
  S; (2020) <arXiv:2012.11767>.  Both the parametric and semi-parametric
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
eCAR.out.html:69:1 (eCAR.out.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘John P Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "P"),
                    family = "Nolan",
                    role = c("aut", "cre"),
                    email = "jpnolan@american.edu")
as necessary.
Found the following HTML validation problems:
e_common.html:50:1 (e_common.Rd:12): Warning: missing </ul> before </div>
e_dims.html:56:1 (e_dims.Rd:13): Warning: missing </ul> before </div>
e_execute.html:48:1 (e_execute.Rd:13): Warning: missing </ul> before </div>
e_lines_gl.html:59:1 (e_lines_gl.Rd:17): Warning: missing </ul> before </div>
e_merge.html:46:1 (e_merge.Rd:10): Warning: missing </ul> before </div>
e_resize.html:46:1 (e_resize.Rd:10): Warning: missing </ul> before </div>
e_utc.html:47:1 (e_utc.Rd:11): Warning: missing </ul> before </div>
echarts4rBoxOutput.html:50:1 (echarts4rBoxOutput.Rd:12): Warning: missing </ul> before </div>
renderEcharts4rBox.html:54:1 (renderEcharts4rBox.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Introduction.html:216:1 (Introduction.Rd:127): Warning: missing </ul> before </div>
Maintainer: ‘David Harvey <harvey@depauw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Harvey",
                    role = c("aut", "cre"),
                    email = "harvey@depauw.edu")
as necessary.
Maintainer: ‘Jennifer Hurley <hurlej2@rpi.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sahir Rai Bhatnagar <sahir.bhatnagar@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Gaurav Bansal <gaurbans@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gaurav",
                    family = "Bansal",
                    role = c("aut", "cre"),
                    email = "gaurbans@gmail.com")
as necessary.
Found the following HTML validation problems:
print.ecmwfr_archetype.html:53:1 (print.ecmwfr_archetype.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Gordana Popovic <g.popovic@unsw.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cgr.Rd: glasso
  plot.cgr.Rd: gplot
  stackedsdm.Rd: mvabund
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
documentation.html:107:1 (documentation.Rd:49): Warning: missing </ul> before </div>
Maintainer: ‘Rodolfo Souza <rodolfomssouza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rodolfo",
                    family = "Souza",
                    role = c("aut", "cre"),
                    email = "rodolfomssouza@gmail.com")
as necessary.
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Castor", "Guisande"),
                    family = "Gonzalez",
                    role = c("aut", "cre"),
                    email = "castor@uvigo.es")
as necessary.
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karline",
                      family = "Soetaert",
                      role = c("aut", "cre"),
                      email = "karline.soetaert@nioz.nl"),
               person(given = c("Peter", "MJ"),
                      family = "Herman",
                      role = "aut",
                      email = "peter.herman@nioz.nl"))
as necessary.
Maintainer: ‘Luis Garcia <lpfgarcia@icmc.usp.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Garcia",
                      role = c("aut", "cre"),
                      email = "lpfgarcia@icmc.usp.br"),
               person(given = "Ana",
                      family = "Lorena",
                      role = c("aut", "ctb")))
as necessary.
checkRd: (-1) ecolRxC.Rd:161-166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:167-175: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:176-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:179-185: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:186-192: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:193-201: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:202-208: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:209-216: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:217-221: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Hugo Salinas <hugosal@comunidad.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

The Description field contains
  <arXiv:1708.01242>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
rca.html:46:1 (rca.Rd:10): Warning: missing </ul> before </div>
File ‘ECOSolveR/libs/ECOSolveR.so’:
  Found ‘printf’, possibly from ‘printf’ (C)
    Objects: ‘ecos/libecos.a’, ‘ecos/libecos_bb.a’
  Found ‘putchar’, possibly from ‘putchar’ (C)
    Objects: ‘ecos/libecos.a’, ‘ecos/libecos_bb.a’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Objects: ‘ecos/libecos.a’, ‘ecos/libecos_bb.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following HTML validation problems:
drawLine.html:50:1 (drawLine.Rd:12): Warning: missing </ul> before </div>
getCalendarTime.html:52:1 (getCalendarTime.Rd:14): Warning: missing </ul> before </div>
orderStatSearchColumns.html:46:1 (orderStatSearchColumns.Rd:10): Warning: missing </ul> before </div>
setCalendar.html:51:1 (setCalendar.Rd:12): Warning: missing </ul> before </div>
showStatItemList.html:54:1 (showStatItemList.Rd:14): Warning: missing </ul> before </div>
showStatTableList.html:50:1 (showStatTableList.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ginv.html:46:1 (ginv.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Antoine Bagnaro <antoine.bagnaro@wanadoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Bagnaro",
                    role = c("aut", "cre"),
                    email = "antoine.bagnaro@wanadoo.fr")
as necessary.
Maintainer: ‘Benjamin L Hlina <benjamin.hlina@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jerome Guitton <jerome.guitton@agrocampus-ouest.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.",
                      family = "Guitton",
                      role = "aut"),
               person(given = "M.",
                      family = "Colleter",
                      role = "aut"),
               person(given = "P.",
                      family = "Gatti",
                      role = "aut"),
               person(given = "D.",
                      family = "Gascuel",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Guitton",
                      role = "cre",
                      email = "jerome.guitton@agrocampus-ouest.fr"))
as necessary.
Found the following HTML validation problems:
E0.1.html:54:1 (E0.1.Rd:14): Warning: missing </ul> before </div>
Emsy.html:54:1 (Emsy.Rd:14): Warning: missing </ul> before </div>
a13.eq.html:70:1 (a13.eq.Rd:22): Warning: missing </ul> before </div>
a13.eq.ac.html:70:1 (a13.eq.ac.Rd:22): Warning: missing </ul> before </div>
mf.diagnosis.html:128:1 (mf.diagnosis.Rd:60): Warning: missing </ul> before </div>
regPB.html:58:1 (regPB.Rd:16): Warning: missing </ul> before </div>
regPB.ac.html:58:1 (regPB.ac.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Nele Schuwirth <nele.schuwirth@eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nele",
                      family = "Schuwirth",
                      role = c("aut", "cre"),
                      email = "nele.schuwirth@eawag.ch"),
               person(given = c("Peter", "Reichert", "with", "contributions", "by", "Simone"),
                      family = "Langhans",
                      role = "aut",
                      email = "peter.reichert@eawag.ch"),
               person(given = "Christian",
                      family = "Michel",
                      role = "aut"))
as necessary.
checkRd: (-1) transformFitness.Rd:25: Lost braces; missing escapes or markup?
    25 | minimization (most others). This function computes a factor from {-1, 1} for
       |                                                                  ^
Found the following HTML validation problems:
plotStatistics.html:56:1 (plotStatistics.Rd:15): Warning: missing </ul> before </div>
reduceToSingleDataFrame.html:61:1 (reduceToSingleDataFrame.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Pankaj Das <pankaj.das2@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pankaj",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "pankaj.das2@icar.gov.in",
                    comment = c(ORCID = "0000-0003-1672-2502"))
as necessary.
Maintainer: ‘Yongbo Gan <yongbogan@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yongbo",
                      family = "Gan",
                      role = c("aut", "cre"),
                      email = "yongbogan@whu.edu.cn"),
               person(given = "Zhijian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Wei",
                      family = "Mei",
                      role = "aut"))
as necessary.
Maintainer: ‘Fengru Wang <wangfr@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fengru",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wangfr@whu.edu.cn"),
               person(given = "Yongbo",
                      family = "Gan",
                      role = "aut"),
               person(given = "Zhijian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Wei",
                      family = "Mei",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
edc_viewer.html:54:1 (edc_viewer.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Eddington.html:135:1 (Eddington.Rd:94): Warning: <h5> anchor "Usage" already defined
Eddington.html:151:1 (Eddington.Rd:104): Warning: <h5> anchor "Usage" already defined
Eddington.html:157:1 (Eddington.Rd:108): Warning: <h5> anchor "Arguments" already defined
Eddington.html:181:1 (Eddington.Rd:122): Warning: <h5> anchor "Usage" already defined
Eddington.html:187:1 (Eddington.Rd:126): Warning: <h5> anchor "Arguments" already defined
Eddington.html:200:1 (Eddington.Rd:133): Warning: <h5> anchor "Returns" already defined
Eddington.html:218:1 (Eddington.Rd:143): Warning: <h5> anchor "Usage" already defined
Eddington.html:224:1 (Eddington.Rd:147): Warning: <h5> anchor "Arguments" already defined
Eddington.html:237:1 (Eddington.Rd:154): Warning: <h5> anchor "Returns" already defined
Found the following HTML validation problems:
add_fixed_holiday.html:58:1 (add_fixed_holiday.Rd:16): Warning: missing </ul> before </div>
add_floating_holiday.html:54:1 (add_floating_holiday.Rd:14): Warning: missing </ul> before </div>
add_holiday_periods.html:54:1 (add_holiday_periods.Rd:14): Warning: missing </ul> before </div>
change_day.html:58:1 (change_day.Rd:16): Warning: missing </ul> before </div>
create_work_schedule.html:50:1 (create_work_schedule.Rd:12): Warning: missing </ul> before </div>
print.work_schedule.html:51:1 (print.work_schedule.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Andreas Henelius <andreas.henelius@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Henelius",
                    role = c("aut", "cre"),
                    email = "andreas.henelius@iki.fi")
as necessary.
checkRd: (-1) read.edf.Rd:30: Lost braces
    30 | Kemp B., V\"{a}rri, A., Rosa, A.C., Nielsen, K.D. and Gade, J. (1992).
       |             ^
Maintainer: ‘Tal Galili <tal.galili@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    TODO:
Found the following HTML validation problems:
install_bundle_py.html:53:1 (install_bundle_py.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
adjToEdge.html:46:1 (adjToEdge.Rd:10): Warning: missing </ul> before </div>
edgeToJSON_igraph.html:46:1 (edgeToJSON_igraph.Rd:10): Warning: missing </ul> before </div>
edgeToJSON_matrix.html:46:1 (edgeToJSON_matrix.Rd:10): Warning: missing </ul> before </div>
edgebundleOutput.html:54:1 (edgebundleOutput.Rd:14): Warning: missing </ul> before </div>
renderEdgebundle.html:54:1 (renderEdgebundle.Rd:14): Warning: missing </ul> before </div>
saveEdgebundle.html:59:1 (saveEdgebundle.Rd:17): Warning: missing </ul> before </div>
shinyedge.html:47:1 (shinyedge.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Glenna Nightingale <glenna.evans@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Glenna",
                    family = "Nightingale",
                    role = c("aut", "cre"),
                    email = "glenna.evans@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Josep Pueyo-Ros [aut, cre] (<https://orcid.org/0000-0002-1236-5651>), ICRA - Catalan Institute for Water Research [fnd] (Edicitnet, 776665)’
  Authors@R: ‘Josep Pueyo-Ros [aut, cre] (ORCID: <https://orcid.org/0000-0002-1236-5651>), ICRA - Catalan Institute for Water Research [fnd] (project: Edicitnet, grant_agreement: 776665)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘indicator_volunteers.R’
Maintainer: ‘Frank Dondelinger <fdondelinger.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Dondelinger",
                      role = c("aut", "cre"),
                      email = "fdondelinger.work@gmail.com"),
               person(given = "Sophie",
                      family = "Lebre",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
canXXXRowTemplate.html:81:1 (canXXXRowTemplate.Rd:26): Warning: missing </ul> before </div>
Found the following HTML validation problems:
editableDT.html:58:1 (editableDT.Rd:16): Warning: missing </ul> before </div>
file2ext.html:46:1 (file2ext.Rd:10): Warning: missing </ul> before </div>
myimport.html:50:1 (myimport.Rd:12): Warning: missing </ul> before </div>
pickerInput3.html:46:1 (pickerInput3.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Edwin de Jonge <edwindjonge@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Edwin",
                      family = "de Jonge",
                      role = c("aut", "cre"),
                      email = "edwindjonge@gmail.com"),
               person(given = "Mark",
                      family = "van der Loo",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.lp.mip.Rd: make.lp
  editrules.plotting.Rd: as.igraph
  editrules_package.Rd: as.igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘EDNE.EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘EDNE.EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘EDNE.EQ.dissolution.profiles.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de"),
               person(given = "Alfred",
                      family = "Ultsch",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
checkIdVar.html:51:1 (checkIdVar.Rd:13): Warning: missing </ul> before </div>
checkPsuStrata.html:46:1 (checkPsuStrata.Rd:10): Warning: missing </ul> before </div>
drawPVs.sdf.html:80:1 (drawPVs.sdf.Rd:31): Warning: missing </ul> before </div>
Maintainer: ‘Vanesa Jorda <jordav@unican.es>’

Found the following (possibly) invalid file URIs:
  URI: www.educationdata.unican.es
    From: man/ineq_female15a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_female25a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_male15a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_male25a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_total15a.Rd
  URI: www.educationdata.unican.es
    From: man/ineq_total25a.Rd
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Maintainer: ‘Vipavee Trivittayasil <vipavee.tri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vipavee",
                    family = "Trivittayasil",
                    role = c("aut", "cre"),
                    email = "vipavee.tri@gmail.com")
as necessary.
checkRd: (-1) eesim.Rd:148-151: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eesim.Rd:152-155: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eesim.Rd:156-158: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Navarro-Gonzalez <david.navarro@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Navarro-Gonzalez",
                      role = c("aut", "cre"),
                      email = "david.navarro@urv.cat"),
               person(given = "Urbano",
                      family = "Lorenzo-Seva",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dot-factor_corres.html:54:1 (dot-factor_corres.Rd:14): Warning: missing </ul> before </div>
dot-nest_sym.html:59:1 (dot-nest_sym.Rd:16): Warning: missing </ul> before </div>
dot-paf_iter.html:71:1 (dot-paf_iter.Rd:22): Warning: missing </ul> before </div>
dot-parallel_sim.html:63:1 (dot-parallel_sim.Rd:18): Warning: missing </ul> before </div>
plot.CD.html:51:1 (plot.CD.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Guangjian Zhang <gzhang3@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guangjian",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "gzhang3@nd.edu"),
               person(given = "Ge",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Minami",
                      family = "Hattori",
                      role = "aut"),
               person(given = "Lauren",
                      family = "Trichtinger",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
effectLiteGUI.html:46:1 (effectLiteGUI.Rd:10): Warning: missing </ul> before </div>
elrEffectsGUI.html:46:1 (elrEffectsGUI.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
effectsize_API.html:95:1 (effectsize_API.Rd:54): Warning: missing </ul> before </div>
effectsize_deprecated.html:60:1 (effectsize_deprecated.Rd:32): Warning: missing </ul> before </div>
is_effectsize_name.html:63:1 (is_effectsize_name.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Isabella Giammusso <isabella.giammusso@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Isabella",
                    family = "Giammusso",
                    role = c("aut", "cre"),
                    email = "isabella.giammusso@unipa.it")
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Maintainer: ‘Wim Van der Elst <Wim.vanderelst@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wim",
                      family = "Van der Elst",
                      role = c("aut", "cre"),
                      email = "wim.vanderelst@gmail.com"),
               person(given = c("Ariel", "Alonso", "&", "Geert"),
                      family = "Molenberghs",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiao-Jun Mao <maoxj.ki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mu-Fa",
                      family = "Chen",
                      role = "aut",
                      email = "mfchen@bnu.edu.cn"),
               person(given = "Xiao-Jun",
                      family = "Mao",
                      role = "cre",
                      email = "maoxj.ki@gmail.com"))
as necessary.
Maintainer: ‘Chris Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  acor.Rd: zoo
  egcm-package.Rd: adf.test, pp.test
  egcm.Rd: zoo, rlm, adf.test, pp.test
  egcm.set.default.i1test.Rd: adf.test, pp.test
  pgff.test.Rd: adf.test
  ur_power.Rd: adf.test, pp.test
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
theme_presentation.html:50:1 (theme_presentation.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_annotations.html:101:1 (add_annotations.Rd:44): Warning: missing </ul> before </div>
annotation_table.html:151:1 (annotation_table.Rd:89): Warning: missing </ul> before </div>
wfdb_annotations.html:171:1 (wfdb_annotations.Rd:111): Warning: missing </ul> before </div>
Maintainer: ‘Till Krenz <egor@tillt.net>’

Found the following (possibly) invalid URLs:
  URL: https:///egor.tillt.net/
    From: man/egor-package.Rd
    Message: Invalid URL: missing authority part
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘clustered.graphs.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as_tibble.egor.Rd: tbl_svy, as_tibble, as_survey
  egor.Rd: as_tibble, tibble, tbl_svy
  rowlist.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Error(s) in re-building vignettes:
  ...
--- re-building ‘egor_allbus.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘egor_allbus.Rmd’

--- re-building ‘qualtrics.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘qualtrics.Rmd’

--- re-building ‘using_egor.Rmd’ using rmarkdown

Quitting from using_egor.Rmd:221-241 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `gray()`:
! invalid gray level, must be in [0,1].
---
Backtrace:
    ▆
 1. └─egor::vis_clustered_graphs(...)
 2.   └─egor (local) plotGraph(graph, center, this_layout)
 3.     └─grDevices::gray(1 - betw_grp_dens/max(betw_grp_dens), alpha = 0.7)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_egor.Rmd' failed with diagnostics:
invalid gray level, must be in [0,1].
--- failed re-building ‘using_egor.Rmd’

SUMMARY: processing the following file failed:
  ‘using_egor.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
alter_design.html:69:1 (alter_design.Rd:28): Warning: missing </ul> before </div>
edgelist_to_wide.html:46:1 (edgelist_to_wide.Rd:10): Warning: missing </ul> before </div>
egor_options.html:89:1 (egor_options.Rd:39): Warning: missing </ul> before </div>
extract_egos_and_return.html:60:1 (extract_egos_and_return.Rd:17): Warning: missing </ul> before </div>
make_edge_list.html:46:1 (make_edge_list.Rd:10): Warning: missing </ul> before </div>
make_egor.html:59:1 (make_egor.Rd:17): Warning: missing </ul> before </div>
return_results.html:55:1 (return_results.Rd:15): Warning: missing </ul> before </div>
rotate_to_equilibrium.html:46:1 (rotate_to_equilibrium.Rd:10): Warning: missing </ul> before </div>
rotate_xy.html:54:1 (rotate_xy.Rd:14): Warning: missing </ul> before </div>
summary.egor.html:71:1 (summary.egor.Rd:27): Warning: missing </ul> before </div>
wide.dyads.to.edgelist.html:69:1 (wide.dyads.to.edgelist.Rd:26): Warning: missing </ul> before </div>
wide.dyads.to.edgelist.regex.html:63:1 (wide.dyads.to.edgelist.regex.Rd:22): Warning: missing </ul> before </div>
wide.to.long.html:79:1 (wide.to.long.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calc_boot_out.html:63:1 (calc_boot_out.Rd:19): Warning: missing </ul> before </div>
paVector.html:58:1 (paVector.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
saveResults.html:57:1 (saveResults.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
frail.fit.html:78:1 (frail.fit.Rd:26): Warning: missing </ul> before </div>
Found the following HTML validation problems:
eexample.html:50:1 (eexample.Rd:12): Warning: missing </ul> before </div>
ehelp.palette.html:48:1 (ehelp.palette.Rd:11): Warning: missing </ul> before </div>
format.defns.html:51:1 (format.defns.Rd:12): Warning: missing </ul> before </div>
print.html:46:1 (print.Rd:10): Warning: missing </ul> before </div>
print.ehelp.html:51:1 (print.ehelp.Rd:12): Warning: missing </ul> before </div>
processOutput.html:58:1 (processOutput.Rd:16): Warning: missing </ul> before </div>
simulatePackage.html:51:1 (simulatePackage.Rd:13): Warning: missing </ul> before </div>
write.Fncorpus.html:78:1 (write.Fncorpus.Rd:30): Warning: missing </ul> before </div>
write.Info.html:64:1 (write.Info.Rd:22): Warning: missing </ul> before </div>
write.ehelp.html:50:1 (write.ehelp.Rd:12): Warning: missing </ul> before </div>
write.fmt.html:58:1 (write.fmt.Rd:16): Warning: missing </ul> before </div>
Error(s) in re-building vignettes:
  ...
--- re-building ‘eHOF.Rnw’ using knitr

Quitting from eHOF.Rnw:57-67 [4site.echo]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `load.taxlist()`:
! Reference list file /tmp/RtmpvcygJv/Species/GermanSL 1.5/species.dbf does not exist.
---
Backtrace:
    x
 1. \-vegdata::tax("all")
 2.   \-vegdata:::load.taxlist(refl, detailed = detailed)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'eHOF.Rnw' failed with diagnostics:
Reference list file /tmp/RtmpvcygJv/Species/GermanSL 1.5/species.dbf does not exist.
--- failed re-building ‘eHOF.Rnw’

SUMMARY: processing the following file failed:
  ‘eHOF.Rnw’

Error: Vignette re-building failed.
Execution halted
Found the following HTML validation problems:
writeCheckData.html:62:1 (writeCheckData.Rd:18): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘directory.R’ ‘facets.R’ ‘metadata.R’
Maintainer: ‘Miguel Porto <mpbertolo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/miguel-porto/eicm
which should likely be
  https://github.com/miguel-porto/eicm/issues
instead.
Maintainer: ‘Jose M. Pavía <jose.m.pavia@uv.es>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Hoff",
                    role = c("aut", "cre"),
                    email = "peter.hoff@duke.edu")
as necessary.

The Description field contains
  an ordered probit specification. See Hoff (2007) <arXiv:0711.1146> for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Wayne Oldford <rwoldford@uwaterloo.ca>’

Found the following (possibly) invalid file URI:
  URI: introduction.html
    From: inst/doc/IndependenceExploration.html
Found the following HTML validation problems:
eikos_data.html:58:1 (eikos_data.Rd:16): Warning: missing </ul> before </div>
eikos_legend.html:71:1 (eikos_legend.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
update_blanket.html:50:1 (update_blanket.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael Kellermann <mrkellermann@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olivia",
                      family = "Lau",
                      role = "aut",
                      email = "olivia.lau@post.harvard.edu"),
               person(given = c("Ryan", "T."),
                      family = "Moore",
                      role = "aut",
                      email = "rtm@american.edu"),
               person(given = "Michael",
                      family = "Kellermann",
                      role = c("aut", "cre"),
                      email = "mrkellermann@gmail.com"))
as necessary.
Maintainer: ‘James Honaker <zelig.zee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gary",
                      family = "King",
                      role = "aut",
                      email = "king@harvard.edu"),
               person(given = "Molly",
                      family = "Roberts",
                      role = "aut",
                      email = "molly.e.roberts@gmail.com"),
               person(given = "James",
                      family = "Honaker",
                      role = "cre",
                      email = "zelig.zee@gmail.com"))
as necessary.
Maintainer: ‘Okan Bulut <bulut@ualberta.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mehmet", "Hakan"),
                      family = "Satman",
                      role = c("aut", "cre"),
                      email = "mhsatman@istanbul.edu.tr",
                      comment = "Ph.D."),
               person(given = "Erkin",
                      family = "Diyarbakirlioglu",
                      role = "aut",
                      comment = "Ph.D."))
as necessary.
Maintainer: ‘Hyukpyo Hong <hphong@kaist.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyukpyo",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "hphong@kaist.ac.kr"),
               person(given = "Boseung",
                      family = "Choi",
                      role = "aut"),
               person(given = c("Jae", "Kyoung"),
                      family = "Kim",
                      role = "aut"))
as necessary.
Maintainer: ‘Guo-You Lan <jj6020770416jj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsin-wen",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "hwchang@stat.sinica.edu.tw")
as necessary.
Maintainer: ‘Lisa Steyer <lisa.steyer@hu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lisa",
                    family = "Steyer",
                    role = c("aut", "cre"),
                    email = "lisa.steyer@hu-berlin.de")
as necessary.

The Description field contains
  <doi:10.1111/biom.13706>) and Steyer et al. (2023, <arXiv:2305.02075>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pi Guo <guopi.01@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pi",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "guopi.01@163.com")
as necessary.
Maintainer: ‘Manuel Pfeuffer <manuel.pfeuffer@hu-berlin.de>’

The Description field contains
  <doi:10.1111/biom.13706>. See Stöcker et. al. (2022) <arXiv:2203.10522>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) fit_mean.Rd:54: Lost braces
    54 | \code{t_optims}{optimal parametrizations}
       |                ^
checkRd: (-1) fit_mean.Rd:55: Lost braces
    55 | \code{G_optims}{optimal rotations}
       |                ^
checkRd: (-1) fit_mean.Rd:56: Lost braces
    56 | \code{b_optims}{optimal scalings}
       |                ^
checkRd: (-1) fit_mean.Rd:57: Lost braces
    57 | \code{n_optims}{optimal re-normalization}
       |                ^
checkRd: (-1) fit_mean.Rd:58: Lost braces
    58 | \code{n_iter}{number of iterations until convergence}
       |              ^
Found the following HTML validation problems:
get_Procrustes_fit_from_param.html:75:1 (get_Procrustes_fit_from_param.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Hui Zou <zouxx019@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Zou",
                      role = c("aut", "cre"),
                      email = "zouxx019@umn.edu"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut",
                      email = "hastie@stanford.edu"))
as necessary.
checkRd: (-1) docs_delete_by_query.Rd:47: Lost braces; missing escapes or markup?
    47 | as a document at .tasks/task/${taskId}. This is yours to keep or remove
       |                               ^
checkRd: (-1) docs_update_by_query.Rd:48: Lost braces; missing escapes or markup?
    48 | as a document at .tasks/task/${taskId}. This is yours to keep or remove
       |                               ^
Maintainer: ‘Luke Mirarix <lmiratrix@g.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Miratrix",
                      role = "aut"),
               person(given = "Luke",
                      family = "Mirarix",
                      role = "cre",
                      email = "lmiratrix@g.harvard.edu"))
as necessary.
checkRd: (-1) AuditErrors.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) compute.audit.errors.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) compute.stark.t.Rd:35: Escaped LaTeX specials: \_ \_
checkRd: (-1) find.q.Rd:44: Escaped LaTeX specials: \_
checkRd: (-1) find.q.Rd:56: Escaped LaTeX specials: \_
checkRd: (-1) stark.test.Rd:50: Escaped LaTeX specials: \$
checkRd: (-1) stark.test.Rd:101: Escaped LaTeX specials: \$ \$
checkRd: (-1) tri.audit.sim.Rd:47: Escaped LaTeX specials: \_
checkRd: (-1) tri.calc.sample.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) tri.sample.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:36: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:49: Escaped LaTeX specials: \$
checkRd: (-1) weight.function.Rd:16: Escaped LaTeX specials: \_
Found the following HTML validation problems:
CAST.audit.html:63:1 (CAST.audit.Rd:21): Warning: missing </ul> before </div>
make.cartoon.html:57:1 (make.cartoon.Rd:16): Warning: missing </ul> before </div>
make.sample.from.totals.html:58:1 (make.sample.from.totals.Rd:14): Warning: missing </ul> before </div>
print.audit.plan.KM.html:51:1 (print.audit.plan.KM.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Willem M. van der Wal <willem@vanderwalresearch.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Willem", "M."),
                    family = "van der Wal",
                    role = c("aut", "cre"),
                    email = "willem@vanderwalresearch.com")
as necessary.
Maintainer: ‘Ardo van den Hout <Ardo.vandenHout@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ardo",
                      family = "van den Hout",
                      role = c("aut", "cre"),
                      email = "ardo.vandenhout@ucl.ac.uk"),
               person(given = c("Mei", "Sum"),
                      family = "Chan",
                      role = "aut"))
as necessary.
checkRd: (-1) electData.Rd:16: Lost braces; missing escapes or markup?
    16 | Variables: \code{id}  = {identification number},
       |                         ^
checkRd: (-1) electData.Rd:17: Lost braces; missing escapes or markup?
    17 | \code{state} = {state}, \code{age} = age in years on a shifted scale (current age minus 70),
       |                ^
checkRd: (-1) summary.elect.Rd:25: Lost braces; missing escapes or markup?
    25 |  TRUE for output on start-state totals e_{r.} (for \code{S}>0)
       |                                          ^
Found the following HTML validation problems:
bbox_to_sf.html:52:1 (bbox_to_sf.Rd:13): Warning: missing </ul> before </div>
estimate_raster_size.html:58:1 (estimate_raster_size.Rd:16): Warning: missing </ul> before </div>
merge_rasters.html:73:1 (merge_rasters.Rd:28): Warning: missing </ul> before </div>
set_opentopo_key.html:49:1 (set_opentopo_key.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Geoff Hing <geoffhing@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Geoff",
                    family = "Hing",
                    role = c("aut", "cre"),
                    email = "geoffhing@gmail.com")
as necessary.

The Description field contains
  (https://github.com/newsdev/elex/), a Python package and command line
Please enclose URLs in angle brackets (<...>).
Found the following HTML validation problems:
results.html:46:1 (results.Rd:10): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
rangeOD.html:46:1 (rangeOD.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Chris Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Marwan El Homsi [aut, cre, cph] (<https://orcid.org/0000-0002-5782-6757>, Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France.), Isabella Annesi-Maesano [ctb, ths, fnd] (<https://orcid.org/0000-0002-6340-9300>, Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France., Department of Allergic and Respiratory Diseases, Montpellier University Hospital, Montpellier.)’
  Authors@R: ‘Marwan El Homsi [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-5782-6757>, affiliation: Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France.), Isabella Annesi-Maesano [ctb, ths, fnd] (ORCID: <https://orcid.org/0000-0002-6340-9300>, affiliation1: Desbrest Institute of Epidemiology and Public Health, Univ Montpellier, INSERM, Montpellier, France., affiliation2: Department of Allergic and Respiratory Diseases, Montpellier University Hospital, Montpellier.)’
Maintainer: ‘Shinichiro Tomizono <cowares@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shinichiro",
                    family = "Tomizono",
                    role = c("aut", "cre"),
                    email = "cowares@gmail.com")
as necessary.
Maintainer: ‘Duncan Murdoch <murdoch.duncan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Murdoch",
                      role = c("aut", "cre"),
                      email = "murdoch.duncan@gmail.com"),
               person(given = c("E.", "D."),
                      family = "Chow",
                      role = "aut",
                      comment = "porting to R by Jesus M. Frias Celayeta"))
as necessary.
File ‘ellipsis/libs/ellipsis.so’:
  Found non-API calls to R: ‘PRVALUE’, ‘Rf_findVarInFrame3’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
dots_empty.html:41:1 (dots_empty.Rd:7): Warning: missing </ul> before </div>
dots_used.html:41:1 (dots_used.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Marko Palangetic <marko.palangetic@ugent.be>’

The Description field contains
  et al. (2021) <arXiv:2011.12560v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Christof Neumann <christofneumann1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christof",
                    family = "Neumann",
                    role = c("aut", "cre"),
                    email = "christofneumann1@gmail.com")
as necessary.
checkRd: (-1) elo.run.Rd:80: Lost braces
    80 | \code{\link{score}}, \link{elo.run.helpers}{elo.run helpers}, \code{\link{elo.calc}},
       |                                            ^
Found the following HTML validation problems:
favored.elo.html:88:1 (favored.elo.Rd:43): Warning: missing </ul> before </div>
rank.teams.html:76:1 (rank.teams.Rd:34): Warning: missing </ul> before </div>
Maintainer: ‘Wassim Youssef <Wassim.G.Youssef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Julien",
                      family = "Tomas",
                      role = "aut"),
               person(given = "Frederic",
                      family = "Planchet",
                      role = "aut"),
               person(given = "Wassim",
                      family = "Youssef",
                      role = c("aut", "cre"),
                      email = "wassim.g.youssef@gmail.com"))
as necessary.
Found the following HTML validation problems:
AddReference.html:54:1 (AddReference.Rd:14): Warning: missing </ul> before </div>
ComparisonMethods.html:81:1 (ComparisonMethods.Rd:29): Warning: missing </ul> before </div>
CompletionA.html:76:1 (CompletionA.Rd:26): Warning: missing </ul> before </div>
CompletionB.html:67:1 (CompletionB.Rd:21): Warning: missing </ul> before </div>
Dispersion.html:67:1 (Dispersion.Rd:21): Warning: missing </ul> before </div>
FctMethod1.html:70:1 (FctMethod1.Rd:22): Warning: missing </ul> before </div>
FctMethod2.html:70:1 (FctMethod2.Rd:22): Warning: missing </ul> before </div>
FctMethod3.html:70:1 (FctMethod3.Rd:22): Warning: missing </ul> before </div>
FctMethod4_1stPart.html:66:1 (FctMethod4_1stPart.Rd:20): Warning: missing </ul> before </div>
FctMethod4_2ndPart.html:78:1 (FctMethod4_2ndPart.Rd:26): Warning: missing </ul> before </div>
Method1.html:58:1 (Method1.Rd:16): Warning: missing </ul> before </div>
Method2.html:58:1 (Method2.Rd:16): Warning: missing </ul> before </div>
Method3.html:58:1 (Method3.Rd:16): Warning: missing </ul> before </div>
Method4A.html:58:1 (Method4A.Rd:16): Warning: missing </ul> before </div>
Method4B.html:71:1 (Method4B.Rd:23): Warning: missing </ul> before </div>
NoCompletion.html:63:1 (NoCompletion.Rd:19): Warning: missing </ul> before </div>
ReadHistory.html:77:1 (ReadHistory.Rd:29): Warning: missing </ul> before </div>
SurfacePlot.html:62:1 (SurfacePlot.Rd:18): Warning: missing </ul> before </div>
ValidationLevel1.html:71:1 (ValidationLevel1.Rd:23): Warning: missing </ul> before </div>
ValidationLevel2.html:62:1 (ValidationLevel2.Rd:18): Warning: missing </ul> before </div>
ValidationLevel3.html:63:1 (ValidationLevel3.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Mai Zhou <mai@ms.uky.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mai",
                    family = "Zhou",
                    role = c("aut", "cre"),
                    email = "mai@ms.uky.edu")
as necessary.
Found the following HTML validation problems:
after.envelope.html:51:1 (after.envelope.Rd:12): Warning: missing </ul> before </div>
as.character.MIME.html:51:1 (as.character.MIME.Rd:12): Warning: missing </ul> before </div>
mime-parameters.html:104:1 (mime-parameters.Rd:42): Warning: missing </ul> before </div>
Maintainer: ‘Joan Garriga <jgarriga@ceab.csic.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joan",
                      family = "Garriga",
                      role = c("aut", "cre"),
                      email = "jgarriga@ceab.csic.es"),
               person(given = c("John", "R.B."),
                      family = "Palmer",
                      role = "aut"),
               person(given = "Aitana",
                      family = "Oltra",
                      role = "aut"),
               person(given = "Frederic",
                      family = "Bartumeus",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
GQTSOM.html:118:1 (GQTSOM.Rd:54): Warning: missing </ul> before </div>
PlotData.html:92:1 (PlotData.Rd:40): Warning: missing </ul> before </div>
PlotDefault.html:46:1 (PlotDefault.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
auto_thin.html:61:1 (auto_thin.Rd:19): Warning: missing </ul> before </div>
factor_diagram.html:110:1 (factor_diagram.Rd:49): Warning: missing </ul> before </div>
Found the following HTML validation problems:
contour3d.html:76:1 (contour3d.Rd:30): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "urbanek@research.att.com"),
               person(given = "Yossi",
                      family = "Rubner",
                      role = "aut"))
as necessary.
License stub is invalid DCF.
Maintainer: ‘Donghoh Kim <donghoh.kim@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
censor_data.html:65:1 (censor_data.Rd:23): Warning: missing </ul> before </div>
dmvnorm.html:54:1 (dmvnorm.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Shawn Garbett <Shawn@Garbett.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shawn",
                      family = "Garbett",
                      role = c("aut", "cre"),
                      email = "shawn@garbett.org"),
               person(given = "Mark",
                      family = "Kozdoba",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
hreal.html:103:1 (hreal.Rd:23): Warning: missing </ul> before </div>
hvol.html:95:1 (hvol.Rd:45): Warning: missing </ul> before </div>
Found the following HTML validation problems:
animate_population.html:52:1 (animate_population.Rd:12): Warning: missing </ul> before </div>
plot_history.html:50:1 (plot_history.Rd:12): Warning: missing </ul> before </div>
plot_population.html:55:1 (plot_population.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
build_factors.html:50:1 (build_factors.Rd:12): Warning: missing </ul> before </div>
build_units_table.html:50:1 (build_units_table.Rd:12): Warning: missing </ul> before </div>
htmlwidgets_attributes.html:50:1 (htmlwidgets_attributes.Rd:12): Warning: missing </ul> before </div>
table_to_r.html:46:1 (table_to_r.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Suren Rathnayake <surenr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suren",
                      family = "Rathnayake",
                      role = c("aut", "cre"),
                      email = "surenr@gmail.com"),
               person(given = "Geoff",
                      family = "McLachlan",
                      role = "aut"),
               person(given = "David",
                      family = "Peel",
                      role = "aut"),
               person(given = "Jangsun",
                      family = "Baek",
                      role = "aut"))
as necessary.
Maintainer: ‘Ziyang Lyu <ziyang.lyu@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziyang",
                      family = "Lyu",
                      role = c("aut", "cre"),
                      email = "ziyang.lyu@unsw.edu.au"),
               person(given = "Daniel",
                      family = "Ahfock",
                      role = "aut"),
               person(given = c("Geoffrey", "J."),
                      family = "McLachlan",
                      role = "aut"))
as necessary.
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anjali",
                      family = "Goswami",
                      role = "aut"),
               person(given = "Tim",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "timcdlucas@gmail.com"),
               person(given = "Prabu",
                      family = "Sivasubramaniam",
                      role = "aut"),
               person(given = "John",
                      family = "Finarelli",
                      role = "aut"))
as necessary.
checkRd: (-1) macacaModels.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) macacaModels.Rd:10-11: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Deniz Akdemir <deniz.akdemir.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Deniz",
                      family = "Akdemir",
                      role = c("aut", "cre"),
                      email = "deniz.akdemir.work@gmail.com"),
               person(given = c("Okeke", "Uche"),
                      family = "Godfrey",
                      role = "aut"))
as necessary.
Maintainer: ‘Jon Barry <jon.barry@cefas.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jon",
                      family = "Barry",
                      role = c("aut", "cre"),
                      email = "jon.barry@cefas.co.uk"),
               person(given = "David",
                      family = "Maxwell",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘emon-package.Rd’:
    \keyword{power, ecological surveys, video surveys, [TRUNCATED]
Maintainer: ‘Simon Schwab <schw4b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Schwab",
                    role = c("aut", "cre"),
                    email = "schw4b@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.character.emphatic.Rd’ ‘as_emphatic.Rd’ ‘as_html.Rd’
    ‘as_latex.Rd’ ‘as_svg.Rd’ ‘as_svg_anim.Rd’ ‘as_svg_group.Rd’
    ‘as_typst.Rd’ ‘hl.Rd’ ‘hl_adjust.Rd’ ‘is_emphatic.Rd’
    ‘knit_print.emphatic.Rd’ ‘print.emphatic.Rd’ ‘show_html.Rd’
    ‘write_xlsx.Rd’
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/em.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) em.Rd:25: Lost braces
    25 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.clogit.Rd:65: Lost braces
    65 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.default.Rd:65: Lost braces
    65 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.fitdist.Rd:49: Lost braces
    49 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.glmerMod.Rd:50: Lost braces
    50 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.panelmodel.Rd:49: Lost braces
    49 |  \code{terms} the code{terms} object used.
       |                       ^
Found the following HTML validation problems:
cstep.html:48:1 (cstep.Rd:11): Warning: missing </ul> before </div>
sstep.html:48:1 (sstep.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eun-Kyung",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "lee.eunk@gmail.com"),
               person(given = "Hye-Min",
                      family = "Choe",
                      role = "aut"))
as necessary.
Maintainer: ‘Linsui Deng <denglinsui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Linsui",
                    family = "Deng",
                    role = c("aut", "cre"),
                    email = "denglinsui@gmail.com")
as necessary.
Maintainer: ‘Sang Kyu Lee <leesa111@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kexuan",
                      family = "Yang",
                      role = "aut",
                      email = "717260446@qq.com"),
               person(given = c("Sang", "Kyu"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "leesa111@msu.edu"),
               person(given = "Jun",
                      family = "Zhao",
                      role = "aut",
                      email = "zhaojun2021@hotmail.com"),
               person(given = "Hyoung-Moon",
                      family = "Kim",
                      role = "aut",
                      email = "hmk966a@gmail.com"))
as necessary.
Maintainer: ‘Uwe Menzel <uwemenzel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Uwe",
                    family = "Menzel",
                    role = c("aut", "cre"),
                    email = "uwemenzel@gmail.com")
as necessary.
Found the following HTML validation problems:
bind.trackdata.html:47:1 (bind.trackdata.Rd:10): Warning: missing </ul> before </div>
create_itemsInLevel.html:239:1 (create_itemsInLevel.Rd:160): Warning: missing </ul> before </div>
create_links.html:75:1 (create_links.Rd:24): Warning: missing </ul> before </div>
dimnames.trackdata.html:47:1 (dimnames.trackdata.Rd:10): Warning: missing </ul> before </div>
dur.html:46:1 (dur.Rd:10): Warning: missing </ul> before </div>
export_seglistToTxtCollection.html:58:1 (export_seglistToTxtCollection.Rd:15): Warning: missing </ul> before </div>
make.emuRsegs.html:58:1 (make.emuRsegs.Rd:16): Warning: missing </ul> before </div>
polygonplot.html:93:1 (polygonplot.Rd:39): Warning: missing </ul> before </div>
print.emuRsegs.html:51:1 (print.emuRsegs.Rd:12): Warning: missing </ul> before </div>
print.emuRtrackdata.html:51:1 (print.emuRtrackdata.Rd:12): Warning: missing </ul> before </div>
sort.emuRsegs.html:55:1 (sort.emuRsegs.Rd:14): Warning: missing </ul> before </div>
summary.emuDBhandle.html:53:1 (summary.emuDBhandle.Rd:12): Warning: missing </ul> before </div>
summary.emusegs.html:51:1 (summary.emusegs.Rd:12): Warning: missing </ul> before </div>
summary.trackdata.html:51:1 (summary.trackdata.Rd:12): Warning: missing </ul> before </div>
update_itemsInLevel.html:105:1 (update_itemsInLevel.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
checkRd: (-1) encode.character.Rd:22: Escaped LaTeX specials: \~
Found the following HTML validation problems:
assign_to_global.html:45:1 (assign_to_global.Rd:10): Warning: missing </ul> before </div>
hex2raw.html:45:1 (hex2raw.Rd:10): Warning: missing </ul> before </div>
raw2hex.html:45:1 (raw2hex.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
Maintainer: ‘Yafei Xu <yafei.xu@hotmail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yafei",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "yafei.xu@hotmail.de")
as necessary.
Maintainer: ‘Fatma Sevinc Kurnaz <fatmasevinckurnaz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fatma", "Sevinc"),
                      family = "Kurnaz",
                      role = c("aut", "cre"),
                      email = "fatmasevinckurnaz@gmail.com"),
               person(given = "Irene",
                      family = "Hoffmann",
                      role = "aut"),
               person(given = "Peter",
                      family = "Filzmoser",
                      role = "aut"))
as necessary.
checkRd: (-1) enetLTS-package.Rd:41: Lost braces; missing escapes or markup?
    41 |   \code{family="binomial"} should be a factor with two levels which is coded as \code{0} and {1}.
       |                                                                                              ^
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Fox",
                      role = "aut"),
               person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = "Anthony",
                      family = "Damico",
                      role = "aut"),
               person(given = c("Anne", "Pier"),
                      family = "Salverda",
                      role = "aut"))
as necessary.
Maintainer: ‘Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>’

The Description field contains
  supports classification (experimental).  <arxiv:2307.00835>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Douglas Bates <bates@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R", "port", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = c("Karen", "A.F."),
                      family = "Copeland",
                      role = "aut",
                      email = "karen@boulderstats.com"),
               person(given = "Douglas",
                      family = "Bates",
                      role = "cre",
                      email = "bates@stat.wisc.edu"))
as necessary.
Found the following HTML validation problems:
plot_jk.html:73:1 (plot_jk.Rd:23): Warning: missing </ul> before </div>
print.html:55:1 (print.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-euclid.html:50:1 (dot-euclid.Rd:12): Warning: missing </ul> before </div>
dot-interpCoordFromQuantile.html:73:1 (dot-interpCoordFromQuantile.Rd:27): Warning: missing </ul> before </div>
dot-scalePredictors.html:54:1 (dot-scalePredictors.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rasterToPoints2.html:46:1 (rasterToPoints2.Rd:10): Warning: missing </ul> before </div>
unwrap_list.html:46:1 (unwrap_list.Rd:10): Warning: missing </ul> before </div>
wrap_list.html:46:1 (wrap_list.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.enriched_glm.html:55:1 (coef.enriched_glm.Rd:14): Warning: missing </ul> before </div>
coef.enriched_lm.html:55:1 (coef.enriched_lm.Rd:14): Warning: missing </ul> before </div>
get_auxiliary_functions.html:52:1 (get_auxiliary_functions.Rd:13): Warning: missing </ul> before </div>
get_bias_function.html:52:1 (get_bias_function.Rd:13): Warning: missing </ul> before </div>
get_dmodel_function.html:52:1 (get_dmodel_function.Rd:13): Warning: missing </ul> before </div>
get_information_function.html:52:1 (get_information_function.Rd:13): Warning: missing </ul> before </div>
get_pmodel_function.html:52:1 (get_pmodel_function.Rd:13): Warning: missing </ul> before </div>
get_qmodel_function.html:52:1 (get_qmodel_function.Rd:13): Warning: missing </ul> before </div>
get_score_function.html:52:1 (get_score_function.Rd:13): Warning: missing </ul> before </div>
get_simulate_function.html:52:1 (get_simulate_function.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Saeid Amiri <saeid.amiri1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saeid",
                      family = "Amiri",
                      role = c("aut", "cre"),
                      email = "saeid.amiri1@gmail.com"),
               person(given = "Bertrand",
                      family = "Clarke",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Clarke.",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1506.07930>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) CTN.Rd:22: Lost braces; missing escapes or markup?
    22 | less memory. Genetic data consists of nucleotide data {A,T,C,G} and are usually saved
       |                                                       ^
Maintainer: ‘Chris Fraley <fraley@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Fraley",
                      role = c("aut", "cre"),
                      email = "fraley@u.washington.edu"),
               person(given = c("Adrian", "E."),
                      family = "Raftery",
                      role = "aut"),
               person(given = c("J.", "McLean"),
                      family = "Sloughter",
                      role = "aut"),
               person(given = "Tilmann",
                      family = "Gneiting",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Washington.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sandor Baran <baran.sandor@inf.unideb.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "RA",
                      family = "Yuen",
                      role = "aut"),
               person(given = "Sandor",
                      family = "Baran",
                      role = c("aut", "cre"),
                      email = "baran.sandor@inf.unideb.hu"),
               person(given = "Chris",
                      family = "Fraley",
                      role = "aut"),
               person(given = "Tilmann",
                      family = "Gneiting",
                      role = "aut"),
               person(given = "Sebastian",
                      family = "Lerch",
                      role = "aut"),
               person(given = "Michael",
                      family = "Scheuerer",
                      role = "aut"),
               person(given = "Thordis",
                      family = "Thorarinsdottir",
                      role = "aut"))
as necessary.
Maintainer: ‘Jakob Messner <jakob.messner@posteo.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dylan Catlett <dcat4444@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dylan",
                      family = "Catlett",
                      role = c("aut", "cre"),
                      email = "dcat4444@gmail.com"),
               person(given = "Kevin",
                      family = "Son",
                      role = "ctb"),
               person(given = "Connie",
                      family = "Liang",
                      role = "ctb"))
as necessary.
Found the following HTML validation problems:
ensr.html:83:1 (ensr.Rd:35): Warning: missing </ul> before </div>
preferable.html:52:1 (preferable.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Didier Chauveau <didier.chauveau@univ-orleans.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘EntropyMCMC-package.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘EntropyMCMC.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘EntropyParallel.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘MCMCcopies.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘MCMCcopies.cl.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘MCMCcopies.mc.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘plot.KbMCMC.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘plot.plMCMC.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘plot_Kblist.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
  File ‘summary.plMCMC.Rd’:
    http://dx.doi.org/10.1051/ps/2012004
Found the following HTML validation problems:
collapseInfo.html:46:1 (collapseInfo.Rd:10): Warning: missing </ul> before </div>
getRenvStatus.html:51:1 (getRenvStatus.Rd:13): Warning: missing </ul> before </div>
getRepo.html:49:1 (getRepo.Rd:10): Warning: missing </ul> before </div>
prettyPrintInfo.html:47:1 (prettyPrintInfo.Rd:10): Warning: missing </ul> before </div>
remoteInfo.html:46:1 (remoteInfo.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cash-enve.GrowthCurve-method.html:51:1 (cash-enve.GrowthCurve-method.Rd:12): Warning: missing </ul> before </div>
cash-enve.RecPlot2-method.html:51:1 (cash-enve.RecPlot2-method.Rd:12): Warning: missing </ul> before </div>
cash-enve.RecPlot2.Peak-method.html:51:1 (cash-enve.RecPlot2.Peak-method.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plotanno.html:50:1 (plotanno.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Martin Loos <mloos@envibee.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Loos",
                      role = c("aut", "cre"),
                      email = "mloos@envibee.ch"),
               person(given = "Christian",
                      family = "Gerber",
                      role = "aut"))
as necessary.
File ‘enviPat/libs/enviPat.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Daniel Mastropietro <mastropi@uwalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Mastropietro",
                    role = c("aut", "cre"),
                    email = "mastropi@uwalumni.com")
as necessary.
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Castor", "Guisande"),
                    family = "Gonzalez",
                    role = c("aut", "cre"),
                    email = "castor@uvigo.es")
as necessary.
checkRd: (-1) metrics.Rd:124: Lost braces
   124 | Avg = 0.5 (sum | P_i - Q_i| + max{ | P_i - Q_i |})
       |                                  ^
Maintainer: ‘Martina Campulova <martina.campulova@mendelu.cz>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘network.Rd’ ‘types.Rd’
Found the following HTML validation problems:
col2hex.html:46:1 (col2hex.Rd:10): Warning: missing </ul> before </div>
dot-getext.html:46:1 (dot-getext.Rd:10): Warning: missing </ul> before </div>
dot-getfilename.html:46:1 (dot-getfilename.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
Found the following HTML validation problems:
ENadddemand.html:58:1 (ENadddemand.Rd:16): Warning: missing </ul> before </div>
ENdeletedemand.html:50:1 (ENdeletedemand.Rd:12): Warning: missing </ul> before </div>
ENsetbasedemand.html:54:1 (ENsetbasedemand.Rd:14): Warning: missing </ul> before </div>
ENsetdemandmodel.html:58:1 (ENsetdemandmodel.Rd:16): Warning: missing </ul> before </div>
ENsetdemandname.html:54:1 (ENsetdemandname.Rd:14): Warning: missing </ul> before </div>
ENsetlinkid.html:50:1 (ENsetlinkid.Rd:12): Warning: missing </ul> before </div>
ENsetlinknodes.html:54:1 (ENsetlinknodes.Rd:14): Warning: missing </ul> before </div>
ENsetnodeid.html:50:1 (ENsetnodeid.Rd:12): Warning: missing </ul> before </div>
ENsetreport.html:46:1 (ENsetreport.Rd:10): Warning: missing </ul> before </div>
ENsetstatusreport.html:46:1 (ENsetstatusreport.Rd:10): Warning: missing </ul> before </div>
ENsettankdata.html:83:1 (ENsettankdata.Rd:33): Warning: missing </ul> before </div>
ENsetvertices.html:54:1 (ENsetvertices.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Bradley Eck <brad@bradeck.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bradley", "J."),
                      family = "Eck",
                      role = "aut"),
               person(given = "Bradley",
                      family = "Eck",
                      role = "cre",
                      email = "brad@bradeck.net"))
as necessary.
Found the following HTML validation problems:
is.epanet.inp.html:46:1 (is.epanet.inp.Rd:10): Warning: missing </ul> before </div>
is.epanet.rpt.html:46:1 (is.epanet.rpt.Rd:10): Warning: missing </ul> before </div>
is.epanetmsx.rpt.html:46:1 (is.epanetmsx.rpt.Rd:10): Warning: missing </ul> before </div>
is.expandedLinkTable.html:46:1 (is.expandedLinkTable.Rd:10): Warning: missing </ul> before </div>
is.sparkline.html:46:1 (is.sparkline.Rd:10): Warning: missing </ul> before </div>
is.sparklineTable.html:46:1 (is.sparklineTable.Rd:10): Warning: missing </ul> before </div>
plot.sparklineTable.html:51:1 (plot.sparklineTable.Rd:12): Warning: missing </ul> before </div>
print.summary.epanet.rpt.html:52:1 (print.summary.epanet.rpt.Rd:12): Warning: missing </ul> before </div>
print.summary.epanetmsx.rpt.html:52:1 (print.summary.epanetmsx.rpt.Rd:12): Warning: missing </ul> before </div>
summary.epanet.inp.html:52:1 (summary.epanet.inp.Rd:12): Warning: missing </ul> before </div>
summary.epanetmsx.rpt.html:51:1 (summary.epanetmsx.rpt.Rd:12): Warning: missing </ul> before </div>
Found the following files/directories:
  ‘Net1-fromR.inp’
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                           ^
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                                        ^
Found the following HTML validation problems:
absmin.criteria.html:47:1 (absmin.criteria.Rd:10): Warning: missing </ul> before </div>
hard.html:50:1 (hard.Rd:12): Warning: missing </ul> before </div>
permColumn.html:51:1 (permColumn.Rd:12): Warning: missing </ul> before </div>
rootmatrix.html:47:1 (rootmatrix.Rd:10): Warning: missing </ul> before </div>
soft.html:50:1 (soft.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Teemu Daniel Laajala <teelaa@utu.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Teemu", "Daniel"),
                      family = "Laajala",
                      role = c("aut", "cre"),
                      email = "teelaa@utu.fi"),
               person(given = "Mika",
                      family = "Murtojarvi",
                      role = "ctb",
                      email = "mianmu2@hotmail.com"))
as necessary.
Found the following HTML validation problems:
PEP-methods.html:74:1 (PEP-methods.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Michael A Rotondi <mrotondi@yorku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "A"),
                    family = "Rotondi",
                    role = c("aut", "cre"),
                    email = "mrotondi@yorku.ca")
as necessary.
Maintainer: ‘Tanujit Chakraborty <tanujitisi@gmail.com>’

The Description field contains
  et al. (2023) <arXiv:2206.10696> <doi:10.1016/j.chaos.2023.113124>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
dot-check_generation_time_valid.html:48:1 (dot-check_generation_time_valid.Rd:12): Warning: missing </ul> before </div>
dot-check_offspring_func_valid.html:55:1 (dot-check_offspring_func_valid.Rd:18): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘clean_admin_names.R’ ‘consistency_check.R’ ‘get_admin_names.R’
    ‘handle_outliers.R’ ‘missing_plot.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  clean_admin_names.Rd: countrycode
  clean_names_strings.Rd: janitor
  consistency_check.Rd: ggplot2
  export.Rd: rio
  import.Rd: rio
  missing_plot.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
check_for_cache_warnings.html:50:1 (check_for_cache_warnings.Rd:12): Warning: missing </ul> before </div>
parse_signal.html:50:1 (parse_signal.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Virasakdi Chongsuvivatwong <cvirasak@medicine.psu.ac.th>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Virasakdi",
                    family = "Chongsuvivatwong",
                    role = c("aut", "cre"),
                    email = "cvirasak@medicine.psu.ac.th")
as necessary.
checkRd: (-1) risk.display.rd:98: Escaped LaTeX specials: \$
Found the following HTML validation problems:
DiscrSI.html:55:1 (DiscrSI.Rd:14): Warning: missing </ul> before </div>
EstimateR.html:145:1 (EstimateR.Rd:70): Warning: missing </ul> before </div>
OverallInfectivity.html:51:1 (OverallInfectivity.Rd:12): Warning: missing </ul> before </div>
WT.html:95:1 (WT.Rd:40): Warning: missing </ul> before </div>
Found the following HTML validation problems:
expo_fun.html:54:1 (expo_fun.Rd:13): Warning: missing </ul> before </div>
gompi_fun.html:54:1 (gompi_fun.Rd:13): Warning: missing </ul> before </div>
logi_fun.html:54:1 (logi_fun.Rd:13): Warning: missing </ul> before </div>
mono_fun.html:54:1 (mono_fun.Rd:13): Warning: missing </ul> before </div>
print.fit_lin.html:51:1 (print.fit_lin.Rd:12): Warning: missing </ul> before </div>
print.fit_nlin2.html:51:1 (print.fit_nlin2.Rd:12): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sub-.epiflows.Rd: [.epicontacts
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
adls_timevarying_region_data.html:65:1 (adls_timevarying_region_data.Rd:20): Warning: missing </ul> before </div>
andh_forest_data.html:75:1 (andh_forest_data.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
api_get_request.html:50:1 (api_get_request.Rd:12): Warning: missing </ul> before </div>
api_post_request.html:50:1 (api_post_request.Rd:12): Warning: missing </ul> before </div>
api_request.html:66:1 (api_request.Rd:24): Warning: missing </ul> before </div>
http_condition.html:50:1 (http_condition.Rd:12): Warning: missing </ul> before </div>
stop_for_status.html:50:1 (stop_for_status.Rd:12): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:151:1 (inst/NEWS.Rd:80): Warning: missing </ul> before </div>
NEWS.html:73:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:93:1 (inst/NEWS.Rd:45): Warning: <h4> anchor "BUG-FIXES" already defined
Found the following HTML validation problems:
as.epi.data.frame.html:47:1 (as.epi.data.frame.Rd:10): Warning: missing </ul> before </div>
create_scenario_list.html:51:1 (create_scenario_list.Rd:20): Warning: <h3> anchor "scenarios.df" already defined
format_param.html:52:1 (format_param.Rd:13): Warning: missing </ul> before </div>
get_nwparam.html:52:1 (get_nwparam.Rd:13): Warning: missing </ul> before </div>
mcat.html:47:1 (mcat.Rd:10): Warning: missing </ul> before </div>
param.net_from_table.html:54:1 (param.net_from_table.Rd:23): Warning: <h3> anchor "long.param.df" already defined
plot.epi.data.frame.html:198:1 (plot.epi.data.frame.Rd:108): Warning: missing </ul> before </div>
print_nwstats_table.html:50:1 (print_nwstats_table.Rd:12): Warning: missing </ul> before </div>
test_icm.html:48:1 (test_icm.Rd:10): Warning: missing </ul> before </div>
test_net.html:48:1 (test_net.Rd:10): Warning: missing </ul> before </div>
use_scenario.html:57:1 (use_scenario.Rd:24): Warning: <h3> anchor "scenario" already defined
verbose.dcm.html:58:1 (verbose.dcm.Rd:17): Warning: missing </ul> before </div>
verbose.icm.html:62:1 (verbose.icm.Rd:19): Warning: missing </ul> before </div>
verbose.net.html:62:1 (verbose.net.Rd:19): Warning: missing </ul> before </div>
checkRd: (-1) runSim.Rd:111: Lost braces
   111 | \ifelse{html}{\out{<i>r</i><sub>1</sub> = 1}}{{\eqn{r_1 = 1}}{r_1 = 1}} while the individual with the lowest phenotypic value
       |                                                              ^
checkRd: (-1) runSim.Rd:112: Lost braces
   112 | is given the rank \ifelse{html}{\out{<i>r<sub>n</sub></i> = <i>n</i>}}{{\eqn{r_n = n}}{r_n = n}}), the probability of an individual
       |                                                                                       ^
checkRd: (-1) runSim.Rd:120-122: Lost braces
   120 | }{
       |  ^
Found the following HTML validation problems:
fit_model.html:52:1 (fit_model.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
epiparameterDB.html:50:1 (epiparameterDB.Rd:14): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Nassim AYAD [aut, cre] (<https://orcid.org/0000-0002-1809-0935>, Laboratory of Modeling and Biostatistics, Pasteur Institute of Algeria)’
  Authors@R: ‘Nassim AYAD [aut, cre] (ORCID: <https://orcid.org/0000-0002-1809-0935>, affiliation: Laboratory of Modeling and Biostatistics, Pasteur Institute of Algeria)’
Maintainer: ‘Bilge Baser <bilge.baser@msgsu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bilge",
                    family = "Baser",
                    role = c("aut", "cre"),
                    email = "bilge.baser@msgsu.edu.tr")
as necessary.
Maintainer: ‘Stuart Lacy <stuart.lacy@york.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stuart",
                    family = "Lacy",
                    role = c("aut", "cre"),
                    email = "stuart.lacy@york.ac.uk")
as necessary.
Maintainer: ‘Adam Omidpanah <adam.omidpanah@wsu.edu>’

Found the following (possibly) invalid file URI:
  URI: www.colorbrewer.org
    From: man/colorbrewer.Rd
Found the following HTML validation problems:
epiworldR-deprecated.html:73:1 (epiworldR-deprecated.Rd:34): Warning: missing </ul> before </div>
Found the following HTML validation problems:
DiseaseModel.html:383:1 (DiseaseModel.Rd:281): Warning: missing </ul> before </div>
DiseaseModel.html:290:1 (DiseaseModel.Rd:228): Warning: <h5> anchor "Usage" already defined
DiseaseModel.html:296:1 (DiseaseModel.Rd:232): Warning: <h5> anchor "Arguments" already defined
DiseaseModel.html:323:1 (DiseaseModel.Rd:249): Warning: <h5> anchor "Usage" already defined
DiseaseModel.html:329:1 (DiseaseModel.Rd:253): Warning: <h5> anchor "Arguments" already defined
DiseaseModel.html:360:1 (DiseaseModel.Rd:270): Warning: <h5> anchor "Usage" already defined
DiseaseModel.html:366:1 (DiseaseModel.Rd:274): Warning: <h5> anchor "Arguments" already defined
SimulationHandler.html:325:1 (SimulationHandler.Rd:206): Warning: missing </ul> before </div>
SimulationHandler.html:180:1 (SimulationHandler.Rd:117): Warning: <h5> anchor "Usage" already defined
SimulationHandler.html:186:1 (SimulationHandler.Rd:121): Warning: <h5> anchor "Arguments" already defined
SimulationHandler.html:222:1 (SimulationHandler.Rd:143): Warning: <h5> anchor "Usage" already defined
SimulationHandler.html:228:1 (SimulationHandler.Rd:147): Warning: <h5> anchor "Arguments" already defined
SimulationHandler.html:261:1 (SimulationHandler.Rd:170): Warning: <h5> anchor "Usage" already defined
SimulationHandler.html:267:1 (SimulationHandler.Rd:174): Warning: <h5> anchor "Arguments" already defined
SimulationHandler.html:282:1 (SimulationHandler.Rd:183): Warning: <h5> anchor "Returns" already defined
SimulationHandler.html:302:1 (SimulationHandler.Rd:195): Warning: <h5> anchor "Usage" already defined
SimulationHandler.html:308:1 (SimulationHandler.Rd:199): Warning: <h5> anchor "Arguments" already defined
Running examples in ‘epocakir-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GFR_staging
> ### Title: GFR Staging
> ### Aliases: GFR_staging GFR_staging.data.frame GFR_staging.units
> ###   GFR_staging.numeric
> 
> ### ** Examples
> 
> df <- tibble::tibble(
+   eGFR = units::set_units(c(-1, NA, 100, 70, 50, 35, 20, 10), "mL/min/1.73m2")
+ )
> 
> GFR_staging(df, "eGFR")
Error: cannot convert mL/(min*1.73m^2) into mL/min
Execution halted
Running ‘testthat.R’ [13s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(epocakir)
  > 
  > test_check("epocakir")
  [ FAIL 1 | WARN 9 | SKIP 0 | PASS 598 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-ckd.R:378:3'): GFR_staging() ───────────────────────────────────
  Error: cannot convert mL/(min*1.73m^2) into mL/min
  Backtrace:
       ▆
    1. ├─epocakir::GFR_staging(df, "eGFR") at test-ckd.R:378:3
    2. └─epocakir:::GFR_staging.data.frame(df, "eGFR")
    3.   ├─epocakir::GFR_staging(.data[[rlang::as_name(rlang::enquo(GFR))]])
    4.   └─epocakir:::GFR_staging.units(.data[[rlang::as_name(rlang::enquo(GFR))]])
    5.     ├─epocakir::GFR_staging(as_metric(GFR = GFR, value_only = TRUE))
    6.     └─epocakir::as_metric(GFR = GFR, value_only = TRUE)
    7.       ├─units::set_units(meas, conversion$metric_units, mode = "standard")
    8.       └─units:::set_units.units(meas, conversion$metric_units, mode = "standard")
    9.         ├─base::`units<-`(`*tmp*`, value = as_units(value, ...))
   10.         └─units:::`units<-.units`(`*tmp*`, value = as_units(value, ...))
  
  [ FAIL 1 | WARN 9 | SKIP 0 | PASS 598 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
dot-checkIndex.html:50:1 (dot-checkIndex.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Emmanuel Arnhold <emmanuelarnhold@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emmanuel",
                    family = "Arnhold",
                    role = c("aut", "cre"),
                    email = "emmanuelarnhold@yahoo.com.br")
as necessary.
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
NEWS.html:44:81 (NEWS.Rd:16): Warning: missing </p> before <a>
NEWS.html:44:5 (NEWS.Rd:16): Warning: missing </a> before <a>
NEWS.html:44:208 (NEWS.Rd:16): Warning: inserting implicit <p>
NEWS.html:44:212 (NEWS.Rd:16): Warning: discarding unexpected </a>
NEWS.html:44:81 (NEWS.Rd:16): Warning: trimming empty <p>
NEWS.html:44:208 (NEWS.Rd:16): Warning: trimming empty <p>
Maintainer: ‘Jabed Tomal <jtomal@tru.ca>’

The Description field contains
  <arXiv:1706.06971> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thorn Thaler <thorn.thaler@thothal.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorn",
                    family = "Thaler",
                    role = c("aut", "cre"),
                    email = "thorn.thaler@thothal.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jun Li <jli49@kent.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "jli49@kent.edu"),
               person(given = c("Song", "Xi"),
                      family = "Chen",
                      role = "aut"),
               person(given = "Lingjun",
                      family = "Li",
                      role = "ctb"),
               person(given = "Clay",
                      family = "James",
                      role = "ctb"))
as necessary.

The Description field contains
  (2012) <arXiv:1206.0917>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Anthony Albano <tony.d.albano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anthony",
                    family = "Albano",
                    role = c("aut", "cre"),
                    email = "tony.d.albano@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Bill Denney <wdenney@humanpredictions.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.

The Description field contains
  equivalence in time-to-event data <arXiv:2009.06699>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Wellek <stefan.wellek@zi-mannheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Wellek",
                      role = c("aut", "cre"),
                      email = "stefan.wellek@zi-mannheim.de"),
               person(given = "Peter",
                      family = "Ziegler",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
export2CEF.html:59:1 (export2CEF.Rd:17): Warning: missing </ul> before </div>
export2MSP.html:68:1 (export2MSP.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Isabel Serra <iserra@crm.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joan", "del"),
                      family = "Castillo",
                      role = "aut"),
               person(given = c("David", "Moriña"),
                      family = "Soler",
                      role = "aut"),
               person(given = "Isabel",
                      family = "Serra",
                      role = c("aut", "cre"),
                      email = "iserra@crm.cat"))
as necessary.
checkRd: (-1) Tm.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:55-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:58-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:36-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:40-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:43-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:47-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:60-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:69-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:75-77: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘render_erd.R’
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:276:1 (inst/NEWS.Rd:240): Warning: missing </ul> before </div>
NEWS.html:47:1 (inst/NEWS.Rd:85): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:77:1 (inst/NEWS.Rd:107): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:122:1 (inst/NEWS.Rd:137): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:135:1 (inst/NEWS.Rd:146): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:152:1 (inst/NEWS.Rd:158): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:163:1 (inst/NEWS.Rd:166): Warning: <h4> anchor "OTHER-USER-VISIBLE-CHANGES" already defined
NEWS.html:178:1 (inst/NEWS.Rd:179): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:197:1 (inst/NEWS.Rd:191): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:214:1 (inst/NEWS.Rd:202): Warning: <h4> anchor "OTHER-USER-VISIBLE-CHANGES" already defined
NEWS.html:233:1 (inst/NEWS.Rd:216): Warning: <h4> anchor "OTHER-USER-VISIBLE-CHANGES" already defined
NEWS.html:261:1 (inst/NEWS.Rd:235): Warning: <h4> anchor "NEW-FEATURES" already defined
Found the following HTML validation problems:
Binomial-ergmReference-cdff43a4.html:64:1 (Binomial-ergmReference-cdff43a4.Rd:25): Warning: missing </ul> before </div>
CMB-ergmTerm-5a51afe9.html:72:1 (CMB-ergmTerm-5a51afe9.Rd:31): Warning: missing </ul> before </div>
CMP-ergmTerm-4d501174.html:62:1 (CMP-ergmTerm-4d501174.Rd:27): Warning: missing </ul> before </div>
Disc-ergmProposal-b6c6e5ca.html:53:1 (Disc-ergmProposal-b6c6e5ca.Rd:22): Warning: missing </ul> before </div>
DiscTNT-ergmProposal-c3c2e8cb.html:55:1 (DiscTNT-ergmProposal-c3c2e8cb.Rd:24): Warning: missing </ul> before </div>
Geometric-ergmReference-1ee5c5ac.html:57:1 (Geometric-ergmReference-1ee5c5ac.Rd:25): Warning: missing </ul> before </div>
Poisson-ergmReference-40df5ec8.html:90:1 (Poisson-ergmReference-40df5ec8.Rd:51): Warning: missing </ul> before </div>
ZIPoisson-ergmProposal-bba55a81.html:49:1 (ZIPoisson-ergmProposal-bba55a81.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Jenine K. Harris <harrisj@wustl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jenine", "K."),
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "harrisj@wustl.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nvertex.Rd: network
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:324:1 (inst/NEWS.Rd:272): Warning: missing </ul> before </div>
NEWS.html:146:1 (inst/NEWS.Rd:155): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:159:1 (inst/NEWS.Rd:164): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:172:1 (inst/NEWS.Rd:173): Warning: <h4> anchor "OTHER-USER-VISIBLE-CHANGES" already defined
NEWS.html:194:1 (inst/NEWS.Rd:190): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:208:1 (inst/NEWS.Rd:198): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:223:1 (inst/NEWS.Rd:209): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:240:1 (inst/NEWS.Rd:219): Warning: <h4> anchor "OTHER-USER-VISIBLE-CHANGES" already defined
NEWS.html:255:1 (inst/NEWS.Rd:229): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:268:1 (inst/NEWS.Rd:238): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:286:1 (inst/NEWS.Rd:250): Warning: <h4> anchor "OTHER-USER-VISIBLE-CHANGES" already defined
NEWS.html:308:1 (inst/NEWS.Rd:265): Warning: <h4> anchor "NEW-FEATURES" already defined
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:229:1 (inst/NEWS.Rd:202): Warning: missing </ul> before </div>
NEWS.html:54:1 (inst/NEWS.Rd:93): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:69:1 (inst/NEWS.Rd:104): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:108:1 (inst/NEWS.Rd:128): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:130:1 (inst/NEWS.Rd:143): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:141:1 (inst/NEWS.Rd:149): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:156:1 (inst/NEWS.Rd:158): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:171:1 (inst/NEWS.Rd:171): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:182:1 (inst/NEWS.Rd:177): Warning: <h4> anchor "OTHER-USER-VISIBLE-CHANGES" already defined
NEWS.html:193:1 (inst/NEWS.Rd:183): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:211:1 (inst/NEWS.Rd:195): Warning: <h4> anchor "NEW-FEATURES" already defined
Found the following HTML validation problems:
AlterSwap-ergmProposal-7e827ae4.html:49:1 (AlterSwap-ergmProposal-7e827ae4.Rd:18): Warning: missing </ul> before </div>
CompleteOrder-ergmReference-f40141c3.html:48:1 (CompleteOrder-ergmReference-f40141c3.Rd:16): Warning: missing </ul> before </div>
rankdeference-ergmTerm-73181c43.html:53:1 (rankdeference-ergmTerm-73181c43.Rd:21): Warning: missing </ul> before </div>
rankedgecov-ergmTerm-5905bc22.html:75:1 (rankedgecov-ergmTerm-5905bc22.Rd:35): Warning: missing </ul> before </div>
rankinconsistency-ergmTerm-b232ab56.html:90:1 (rankinconsistency-ergmTerm-b232ab56.Rd:46): Warning: missing </ul> before </div>
ranknodeicov-ergmTerm-856bed59.html:59:1 (ranknodeicov-ergmTerm-856bed59.Rd:20): Warning: missing </ul> before </div>
ranknonconformity-ergmTerm-a4593778.html:100:1 (ranknonconformity-ergmTerm-a4593778.Rd:46): Warning: missing </ul> before </div>
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘erlang_c_app.R’
Found the following HTML validation problems:
attach_startdate_agg.html:46:1 (attach_startdate_agg.Rd:10): Warning: missing </ul> before </div>
check_cl.input_format.html:59:1 (check_cl.input_format.Rd:16): Warning: missing </ul> before </div>
check_dist.html:46:1 (check_dist.Rd:10): Warning: missing </ul> before </div>
check_for_deconv.html:50:1 (check_for_deconv.Rd:12): Warning: missing </ul> before </div>
check_prm.R.html:50:1 (check_prm.R.Rd:12): Warning: missing </ul> before </div>
check_prm.daily.html:46:1 (check_prm.daily.Rd:10): Warning: missing </ul> before </div>
check_prm.daily.check.html:46:1 (check_prm.daily.check.Rd:10): Warning: missing </ul> before </div>
check_prm.smooth.html:46:1 (check_prm.smooth.Rd:10): Warning: missing </ul> before </div>
cl.data.html:65:1 (cl.data.Rd:21): Warning: missing </ul> before </div>
correct_underreporting.html:50:1 (correct_underreporting.Rd:12): Warning: missing </ul> before </div>
deconv.html:58:1 (deconv.Rd:16): Warning: missing </ul> before </div>
estimate_R_cl_single.html:103:1 (estimate_R_cl_single.Rd:44): Warning: missing </ul> before </div>
fit_jags_aggreg.html:111:1 (fit_jags_aggreg.Rd:42): Warning: missing </ul> before </div>
na_to_0.html:46:1 (na_to_0.Rd:10): Warning: missing </ul> before </div>
reports_to_incidence.html:68:1 (reports_to_incidence.Rd:24): Warning: missing </ul> before </div>
reshape_fit_jags.html:46:1 (reshape_fit_jags.Rd:10): Warning: missing </ul> before </div>
sample_a_dist.html:49:1 (sample_a_dist.Rd:12): Warning: missing </ul> before </div>
sample_from_dist.html:52:1 (sample_from_dist.Rd:13): Warning: missing </ul> before </div>
sample_post_ee.html:54:1 (sample_post_ee.Rd:14): Warning: missing </ul> before </div>
summarise_by_date_iters.html:46:1 (summarise_by_date_iters.Rd:10): Warning: missing </ul> before </div>
ww.data.html:62:1 (ww.data.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘David Causeur <david.causeur@agrocampus-ouest.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Causeur",
                      role = c("aut", "cre"),
                      email = "david.causeur@agrocampus-ouest.fr"),
               person(given = "Ching-Fan",
                      family = "Sheu",
                      role = "aut"),
               person(given = "Mei-Chen",
                      family = "Chu",
                      role = "aut"),
               person(given = "Flavia",
                      family = "Rufini",
                      role = "aut"))
as necessary.
checkRd: (-1) ifa.Rd:16: Lost braces; missing escapes or markup?
    16 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then Sigma^{-1} 
       |                                                                         ^
checkRd: (-1) ifa.Rd:17: Lost braces; missing escapes or markup?
    17 | has the corresponding q-factor decomposition Sigma^{-1}=diag(phi)(I-theta theta')diag(phi), where theta is a mxq matrix and phi the vector of 
       |                                                    ^
checkRd: (-1) ifa.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{iSB}{m x q matrix (diag(Psi)+BB')^{-1}B.}
       |                                         ^
checkRd: (-1) isqrtfa.Rd:15: Lost braces; missing escapes or markup?
    15 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then the function returns a matrix Omega such that Sigma^{-1} = Omega Omega'. Equivalently,
       |                                                                                                                       ^
Found the following HTML validation problems:
cat_coefficients.html:51:1 (cat_coefficients.Rd:12): Warning: missing </ul> before </div>
expect_values.html:58:1 (expect_values.Rd:16): Warning: missing </ul> before </div>
mip_rule.html:50:1 (mip_rule.Rd:12): Warning: missing </ul> before </div>
translate_mip_lp.html:58:1 (translate_mip_lp.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Catherine B. Hurley <catherine.hurley@mu.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Catherine", "B."),
                    family = "Hurley",
                    role = c("aut", "cre"),
                    email = "catherine.hurley@mu.ie")
as necessary.
Maintainer: ‘Merlin Unterfinger <info@munterfinger.ch>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matteo Fasiolo <matteo.fasiolo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matteo",
                      family = "Fasiolo",
                      role = c("aut", "cre"),
                      email = "matteo.fasiolo@gmail.com"),
               person(given = c("Simon", "N."),
                      family = "Wood",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) enp.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enp.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
parameter_definition.html:66:1 (parameter_definition.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
CorrelatedPatientSample.html:150:1 (CorrelatedPatientSample.Rd:96): Warning: <h5> anchor "Usage" already defined
CorrelatedPatientSample.html:156:1 (CorrelatedPatientSample.Rd:100): Warning: <h5> anchor "Arguments" already defined
CorrelatedPatientSample.html:179:1 (CorrelatedPatientSample.Rd:113): Warning: <h5> anchor "Usage" already defined
CorrelatedPatientSample.html:185:1 (CorrelatedPatientSample.Rd:117): Warning: <h5> anchor "Arguments" already defined
PatientSample.html:153:1 (PatientSample.Rd:92): Warning: <h5> anchor "Usage" already defined
PatientSample.html:164:1 (PatientSample.Rd:101): Warning: <h5> anchor "Arguments" already defined
PatientSample.html:195:1 (PatientSample.Rd:122): Warning: <h5> anchor "Usage" already defined
PatientSample.html:201:1 (PatientSample.Rd:126): Warning: <h5> anchor "Arguments" already defined
PatientSample.html:224:1 (PatientSample.Rd:139): Warning: <h5> anchor "Usage" already defined
PatientSample.html:230:1 (PatientSample.Rd:143): Warning: <h5> anchor "Arguments" already defined
PatientSample.html:253:1 (PatientSample.Rd:156): Warning: <h5> anchor "Usage" already defined
PatientSample.html:259:1 (PatientSample.Rd:160): Warning: <h5> anchor "Arguments" already defined
PatientSample.html:286:1 (PatientSample.Rd:177): Warning: <h5> anchor "Usage" already defined
PatientSample.html:292:1 (PatientSample.Rd:181): Warning: <h5> anchor "Arguments" already defined
PatientSample.html:315:1 (PatientSample.Rd:194): Warning: <h5> anchor "Usage" already defined
PatientSample.html:321:1 (PatientSample.Rd:198): Warning: <h5> anchor "Arguments" already defined
PatientSample.html:348:1 (PatientSample.Rd:215): Warning: <h5> anchor "Usage" already defined
PatientSample.html:354:1 (PatientSample.Rd:219): Warning: <h5> anchor "Arguments" already defined
check_simulations_consistency.html:46:1 (check_simulations_consistency.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
data_bodywellf.html:56:1 (data_bodywellf.Rd:15): Warning: missing </ul> before </div>
data_bodywellfm.html:56:1 (data_bodywellfm.Rd:15): Warning: missing </ul> before </div>
data_bodywellm.html:56:1 (data_bodywellm.Rd:15): Warning: missing </ul> before </div>
data_campus_involvement.html:69:1 (data_campus_involvement.Rd:19): Warning: missing </ul> before </div>
data_chap_8_paired_ex_8.18.html:59:1 (data_chap_8_paired_ex_8.18.Rd:17): Warning: missing </ul> before </div>
data_college_survey_1.html:98:1 (data_college_survey_1.Rd:36): Warning: missing </ul> before </div>
data_college_survey_2.html:85:1 (data_college_survey_2.Rd:30): Warning: missing </ul> before </div>
data_damischrcj.html:61:1 (data_damischrcj.Rd:18): Warning: missing </ul> before </div>
data_exam_scores.html:62:1 (data_exam_scores.Rd:16): Warning: missing </ul> before </div>
data_home_prices.html:71:1 (data_home_prices.Rd:21): Warning: missing </ul> before </div>
data_labels_flavor.html:75:1 (data_labels_flavor.Rd:19): Warning: missing </ul> before </div>
data_religious_belief.html:60:1 (data_religious_belief.Rd:16): Warning: missing </ul> before </div>
data_sleep_beauty.html:61:1 (data_sleep_beauty.Rd:15): Warning: missing </ul> before </div>
data_smithrecall.html:63:1 (data_smithrecall.Rd:19): Warning: missing </ul> before </div>
data_thomason_1.html:63:1 (data_thomason_1.Rd:16): Warning: missing </ul> before </div>
esci_plot_difference_axis_x.html:78:1 (esci_plot_difference_axis_x.Rd:31): Warning: missing </ul> before </div>
print.esci_estimate.html:63:1 (print.esci_estimate.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Lauren Eyler Dang <lauren.eyler@berkeley.edu>’

The Description field contains
  <arXiv:2210.05802>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhao Yang <yangz98@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhao",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yangz98@connect.hku.hk"),
               person(given = "Ruitao",
                      family = "Lin",
                      role = "aut"),
               person(given = "Guosheng",
                      family = "Yin",
                      role = "aut"),
               person(given = "Ying",
                      family = "Yuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Satoshi Aoki <aokis1ll1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Satoshi",
                    family = "Aoki",
                    role = c("aut", "cre"),
                    email = "aokis1ll1@gmail.com")
as necessary.
Found the following HTML validation problems:
eSDM_GUI.html:48:1 (eSDM_GUI.Rd:11): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘esem_cfa_syntax.R’
Maintainer: ‘Wassim Youssef <Wassim.G.Youssef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Charles",
                      family = "Croix",
                      role = "aut"),
               person(given = "Thierry",
                      family = "Moudiki",
                      role = "aut"),
               person(given = "Frédéric",
                      family = "Planchet",
                      role = "aut"),
               person(given = "Wassim",
                      family = "Youssef",
                      role = c("aut", "cre"),
                      email = "wassim.g.youssef@gmail.com"))
as necessary.
Found the following HTML validation problems:
Bond_PriceDistribution.html:52:1 (Bond_PriceDistribution.Rd:12): Warning: missing </ul> before </div>
CBond_PriceDistribution.html:56:1 (CBond_PriceDistribution.Rd:14): Warning: missing </ul> before </div>
CDSPremium_PriceDistribution.html:49:1 (CDSPremium_PriceDistribution.Rd:10): Warning: missing </ul> before </div>
ConvBond_PriceDistribution.html:60:1 (ConvBond_PriceDistribution.Rd:17): Warning: missing </ul> before </div>
EuroCall_Stock_PriceDistribution.html:48:1 (EuroCall_Stock_PriceDistribution.Rd:10): Warning: missing </ul> before </div>
EuroCall_ZC_PriceDistribution.html:52:1 (EuroCall_ZC_PriceDistribution.Rd:12): Warning: missing </ul> before </div>
EuroPut_Stock_PriceDistribution.html:48:1 (EuroPut_Stock_PriceDistribution.Rd:10): Warning: missing </ul> before </div>
EuroPut_ZC_PriceDistribution.html:52:1 (EuroPut_ZC_PriceDistribution.Rd:12): Warning: missing </ul> before </div>
ZCBond_PriceDistribution.html:44:1 (ZCBond_PriceDistribution.Rd:8): Warning: missing </ul> before </div>
setRiskParamsScenariosRE.html:55:1 (setRiskParamsScenariosRE.Rd:13): Warning: missing </ul> before </div>
setRiskParamsScenariosS.html:59:1 (setRiskParamsScenariosS.Rd:15): Warning: missing </ul> before </div>
setRiskParamsScenariosdefSpr.html:55:1 (setRiskParamsScenariosdefSpr.Rd:13): Warning: missing </ul> before </div>
setRiskParamsScenariosliqSpr.html:46:1 (setRiskParamsScenariosliqSpr.Rd:8): Warning: missing </ul> before </div>
setRiskParamsScenariosrt.html:46:1 (setRiskParamsScenariosrt.Rd:8): Warning: missing </ul> before </div>
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Marcel Miché <esmprep@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcel",
                    family = "Miché",
                    role = c("aut", "cre"),
                    email = "esmprep@gmail.com")
as necessary.
Found the following HTML validation problems:
G1_fun.html:59:1 (G1_fun.Rd:16): Warning: missing </ul> before </div>
G1_prime_fun.html:59:1 (G1_prime_fun.Rd:16): Warning: missing </ul> before </div>
G1_prime_prime_fun.html:59:1 (G1_prime_prime_fun.Rd:16): Warning: missing </ul> before </div>
G2_curly_fun.html:68:1 (G2_curly_fun.Rd:19): Warning: missing </ul> before </div>
G2_fun.html:68:1 (G2_fun.Rd:19): Warning: missing </ul> before </div>
G2_prime_fun.html:68:1 (G2_prime_fun.Rd:19): Warning: missing </ul> before </div>
G2_prime_prime.html:68:1 (G2_prime_prime.Rd:19): Warning: missing </ul> before </div>
G_vec.html:55:1 (G_vec.Rd:15): Warning: missing </ul> before </div>
cdf_at_quantile.html:55:1 (cdf_at_quantile.Rd:14): Warning: missing </ul> before </div>
conditional_mean_sigma.html:50:1 (conditional_mean_sigma.Rd:12): Warning: missing </ul> before </div>
conditional_truncated_variance.html:66:1 (conditional_truncated_variance.Rd:14): Warning: missing </ul> before </div>
esr_rho_lp.html:70:1 (esr_rho_lp.Rd:22): Warning: missing </ul> before </div>
estfun.esreg.html:53:1 (estfun.esreg.Rd:12): Warning: missing </ul> before </div>
lambda_matrix.html:79:1 (lambda_matrix.Rd:25): Warning: missing </ul> before </div>
sigma_matrix.html:66:1 (sigma_matrix.Rd:19): Warning: missing </ul> before </div>
vcov.esreg.html:55:1 (vcov.esreg.Rd:14): Warning: missing </ul> before </div>
vcovA.html:107:1 (vcovA.Rd:38): Warning: missing </ul> before </div>
vcovB.html:61:1 (vcovB.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Andrew Simmons <akwsimmo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Simmons",
                    role = c("aut", "cre"),
                    email = "akwsimmo@gmail.com")
as necessary.
File ‘essentials/libs/essentials.so’:
  Found non-API calls to R: ‘IS_S4_OBJECT’, ‘OBJECT’, ‘UNSET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Housen Li <housen.li@outlook.com>’

The Description field contains
  <arXiv:1612.07216>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mads Lindskou <mads@math.aau.dk>’

The Description field contains
  Garofalakis, Michael I Jordan (2013) <arXiv:1301.2267>. The ESS
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
as_adj_lst.html:46:1 (as_adj_lst.Rd:10): Warning: missing </ul> before </div>
print.gengraph.html:51:1 (print.gengraph.Rd:12): Warning: missing </ul> before </div>
print.tree.html:51:1 (print.tree.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jorge Cimentada <cimentadaj@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.resumen.html:51:1 (print.resumen.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
estat_api.html:54:1 (estat_api.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Cengiz Zopluoglu <cen.zop@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cengiz",
                    family = "Zopluoglu",
                    role = c("aut", "cre"),
                    email = "cen.zop@gmail.com")
as necessary.
Maintainer: ‘Ladislas Nalborczyk <ladislas.nalborczyk@gmail.com>’

The Description field contains
  <arXiv:1704.02030v3>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) aic.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) aic.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:64: Escaped LaTeX specials: \&
Maintainer: ‘Giulio Costantini <giulio.costantini@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giulio",
                      family = "Costantini",
                      role = c("aut", "cre"),
                      email = "giulio.costantini@unimib.it"),
               person(given = "Nils",
                      family = "Kappelmann",
                      role = "aut"),
               person(given = "Sacha",
                      family = "Epskamp",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
extract.lm_robust.html:114:1 (extract.lm_robust.Rd:62): Warning: missing </ul> before </div>
lm_robust_fit.html:118:1 (lm_robust_fit.Rd:54): Warning: missing </ul> before </div>
Maintainer: ‘Xuan You <youxuan90@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuan",
                      family = "You",
                      role = c("aut", "cre"),
                      email = "youxuan90@gmail.com"),
               person(given = "Yichen",
                      family = "Cheng",
                      role = "aut",
                      email = "ycheng11@gsu.edu"))
as necessary.
Maintainer: ‘Rodrigo R Remédio <rremedio@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘wooldridge.Rd’:
    https://doi.org/10.1016/j.econlet.2009.04.026
Found the following HTML validation problems:
combination_with_repetition.html:50:1 (combination_with_repetition.Rd:12): Warning: missing </ul> before </div>
poly_elements.html:50:1 (poly_elements.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coh.html:66:1 (coh.Rd:20): Warning: missing </ul> before </div>
descrip_stats.html:51:1 (descrip_stats.Rd:15): Warning: missing </ul> before </div>
ecdf_fun.html:64:1 (ecdf_fun.Rd:23): Warning: missing </ul> before </div>
hedg.html:54:1 (hedg.Rd:14): Warning: missing </ul> before </div>
paired_ecdf.html:64:1 (paired_ecdf.Rd:23): Warning: missing </ul> before </div>
psd.html:58:1 (psd.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
Found the following HTML validation problems:
bwd.nrd.html:70:1 (bwd.nrd.Rd:26): Warning: <h3> anchor "_sec_note" already defined
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  catalog.Rd: inside.owin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mario Hasler <hasler@email.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mario",
                    family = "Hasler",
                    role = c("aut", "cre"),
                    email = "hasler@email.uni-kiel.de")
as necessary.
checkRd: (-1) ETC-package.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:32: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jan",
                    family = "Wijffels",
                    role = c("aut", "cre"),
                    email = "jwijffels@bnosac.be")
as necessary.
Maintainer: ‘Riccardo Giubilei <riccardogbl@gmail.com>’

The Description field contains
  Giubilei et al. (2022) <arXiv:2207.04430>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) data_cls.Rd:24: Lost braces
    24 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability 0.10 for
       |                    ^
checkRd: (-1) data_cls.Rd:24: Lost braces
    24 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability 0.10 for
       |                            ^
checkRd: (-1) data_reg.Rd:21: Lost braces
    21 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability given by
       |                    ^
checkRd: (-1) data_reg.Rd:21: Lost braces
    21 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability given by
       |                            ^
Found the following HTML validation problems:
dot-onLoad.html:57:1 (dot-onLoad.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Anders D. Sleire <sleire@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Anders", "D."),
                    family = "Sleire",
                    role = c("aut", "cre"),
                    email = "sleire@gmail.com")
as necessary.
Maintainer: ‘Matthew Stephens <mstephens@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Stephens",
                    role = c("aut", "cre"),
                    email = "mstephens@uchicago.edu")
as necessary.
Found the following HTML validation problems:
df_to_char.html:46:1 (df_to_char.Rd:10): Warning: missing </ul> before </div>
plot.dot_plot.html:51:1 (plot.dot_plot.Rd:12): Warning: missing </ul> before </div>
print.dot_plot.html:51:1 (print.dot_plot.Rd:12): Warning: missing </ul> before </div>
print.safety_summary.html:51:1 (print.safety_summary.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘elx_run_query.R’
Found the following HTML validation problems:
dot-inheritParams.html:82:1 (dot-inheritParams.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Leo Lahti <leo.lahti@iki.fi>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#rOpenGov_eurostat:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
  URL: https://app.gitter.im/#/room/#rOpenGov_eurostat:gitter.im?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Found the following HTML validation problems:
convert_time_col.html:51:1 (convert_time_col.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Fahimeh Nezhadmoghadam <f.nejad.moghadam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fahimeh", "Nezhadmoghadam,Jose", "Gerardo"),
                      family = "Tamez-Pena",
                      role = "aut"),
               person(given = "Fahimeh",
                      family = "Nezhadmoghadam",
                      role = "cre",
                      email = "f.nejad.moghadam@gmail.com"))
as necessary.
checkRd: (-1) FuzzyCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "fcm {ppclust}"
       |                                                       ^
checkRd: (-1) pamCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "pam {cluster}"
       |                                                       ^
Maintainer: ‘Michael Lingzhi Li <mili@hbs.edu>’

The Description field contains
  <arXiv:1905.05389>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
compute_qoi.html:50:1 (compute_qoi.Rd:12): Warning: missing </ul> before </div>
compute_qoi_user.html:70:1 (compute_qoi_user.Rd:22): Warning: missing </ul> before </div>
create_ml_args.html:46:1 (create_ml_args.Rd:10): Warning: missing </ul> before </div>
create_ml_args_bart.html:46:1 (create_ml_args_bart.Rd:10): Warning: missing </ul> before </div>
create_ml_args_bartc.html:46:1 (create_ml_args_bartc.Rd:10): Warning: missing </ul> before </div>
create_ml_args_causalforest.html:46:1 (create_ml_args_causalforest.Rd:10): Warning: missing </ul> before </div>
create_ml_args_lasso.html:46:1 (create_ml_args_lasso.Rd:10): Warning: missing </ul> before </div>
create_ml_args_superLearner.html:46:1 (create_ml_args_superLearner.Rd:10): Warning: missing </ul> before </div>
create_ml_args_svm.html:46:1 (create_ml_args_svm.Rd:10): Warning: missing </ul> before </div>
create_ml_args_svm_cls.html:46:1 (create_ml_args_svm_cls.Rd:10): Warning: missing </ul> before </div>
create_ml_arguments.html:54:1 (create_ml_arguments.Rd:14): Warning: missing </ul> before </div>
print.summary.itr.html:51:1 (print.summary.itr.Rd:12): Warning: missing </ul> before </div>
print.summary.test_itr.html:51:1 (print.summary.test_itr.Rd:12): Warning: missing </ul> before </div>
summary.itr.html:51:1 (summary.itr.Rd:12): Warning: missing </ul> before </div>
summary.test_itr.html:51:1 (summary.test_itr.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
binary_operators_ref.html:40:1 (binary_operators_ref.Rd:7): Warning: missing </ul> before </div>
map_ref.html:40:1 (map_ref.Rd:7): Warning: missing </ul> before </div>
mapping_names_ref.html:40:1 (mapping_names_ref.Rd:7): Warning: missing </ul> before </div>
pval_ref.html:40:1 (pval_ref.Rd:7): Warning: missing </ul> before </div>
singular_operators_ref.html:40:1 (singular_operators_ref.Rd:7): Warning: missing </ul> before </div>
text_ref.html:40:1 (text_ref.Rd:7): Warning: missing </ul> before </div>
tree_ref.html:40:1 (tree_ref.Rd:7): Warning: missing </ul> before </div>
valid_functions_ref.html:40:1 (valid_functions_ref.Rd:7): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_traceback.html:47:1 (create_traceback.Rd:11): Warning: missing </ul> before </div>
local_reproducible_output.html:81:1 (local_reproducible_output.Rd:28): Warning: missing </ul> before </div>
try_capture_stack.html:51:1 (try_capture_stack.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
threshold_selection.html:82:1 (threshold_selection.Rd:34): Warning: missing </ul> before </div>
Maintainer: ‘Danlu Guo <danlu.guo@unimelb.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Danlu",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "danlu.guo@adelaide.edu.au"),
               person(given = "Seth",
                      family = "Westra",
                      role = "aut",
                      email = "swestra@civeng.adelaide.edu.au"),
               person(given = "Tim",
                      family = "Peterson",
                      role = "ctb",
                      email = "tim.peterson@monash.edu"))
as necessary.
Maintainer: ‘Brian Bader <bbader.stat@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thierry Denoeux <tdenoeux@utc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thierry",
                    family = "Denoeux",
                    role = c("aut", "cre"),
                    email = "tdenoeux@utc.fr")
as necessary.
Maintainer: ‘Alexander Karlsson <alexander.karlsson@his.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Karlsson",
                    role = c("aut", "cre"),
                    email = "alexander.karlsson@his.se")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alec", "Stephenson.", "Function", "fbvpot", "by", "Chris"),
                      family = "Ferro.",
                      role = "aut"),
               person(given = "Alec",
                      family = "Stephenson",
                      role = "cre",
                      email = "alec_stephenson@hotmail.com"))
as necessary.
Maintainer: ‘Gert Janssenswillen <gert.janssenswillen@uhasselt.be>’

The BugReports field in DESCRIPTION has
  https://github.com/bupaverse/eventdataR/
which should likely be
  https://github.com/bupaverse/eventdataR/issues
instead.
Maintainer: ‘Sowmya Chandrasekaran <sowzz.17@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Sowmya Chandrasekaran <sowzz.17@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
print.edObject.html:52:1 (print.edObject.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calc_ipcw_pos.html:66:1 (calc_ipcw_pos.Rd:20): Warning: missing </ul> before </div>
check_mod_cens.html:47:1 (check_mod_cens.Rd:10): Warning: missing </ul> before </div>
match_cause.html:50:1 (match_cause.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon,",
                      role = "aut",
                      email = "drjimlemon@gmail.com"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "cre",
                      email = "drjimlemon@gmail.com"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jiafen Gong <jiafen.gong@sickkids.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Lisa", "J", "Strug;", "Dr.", "Zeynep", "Baskurt", "<zeynep.baskurt@sickkids.ca>;", "Bowei", "Xiao", "<bowei.xiao91@gmail.com>;", "Ted", "Chiang"),
                      family = "<theodorechiang@gmail.com>",
                      role = "aut",
                      email = "theodorechiang@gmail.com"),
               person(given = "Jiafen",
                      family = "Gong",
                      role = "cre",
                      email = "jiafen.gong@sickkids.ca"))
as necessary.
checkRd: (-1) calculateGLR.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) glr.Rd:5: Lost braces
     5 |   Conducts a generalized likelihood ratio test testing whether {\eqn{\beta \in}  (-\code{c},\code{c})}. Covariates can be accommodated.
       |                                                                ^
checkRd: (-1) glr.Rd:34: Lost braces
    34 |   This is a similar function to the main function \code{evian}. Instead of testing H0: \eqn{\beta}=0, it tests for whether H0:{\eqn{\beta \in} (-\code{c},\code{c})}.
       |                                                                                                                               ^
Maintainer: ‘Bikram Karmakar <bkarmakar@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bikram",
                    family = "Karmakar",
                    role = c("aut", "cre"),
                    email = "bkarmakar@ufl.edu")
as necessary.
Maintainer: ‘Robert van Hulst <rvhulst@ubishops.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "van Hulst",
                    role = c("aut", "cre"),
                    email = "rvhulst@ubishops.ca")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/rvhulst/evidence/
which should likely be
  https://github.com/rvhulst/evidence/issues
instead.
checkRd: (-1) Snoring.Rd:21: Escaped LaTeX specials: \&
Found the following HTML validation problems:
createApproximations.html:50:1 (createApproximations.Rd:12): Warning: missing </ul> before </div>
loadCyclopsLibraryForJava.html:48:1 (loadCyclopsLibraryForJava.Rd:12): Warning: missing </ul> before </div>
summarizeChain.html:50:1 (summarizeChain.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
'library' or 'require' call not declared from: ‘ggplot2’
Maintainer: ‘Carl Scarrott <carl.scarrott@canterbury.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carl",
                      family = "Scarrott",
                      role = c("aut", "cre"),
                      email = "carl.scarrott@canterbury.ac.nz"),
               person(given = "Yang",
                      family = "Hu",
                      role = "aut"),
               person(given = "Alfadino",
                      family = "Akbar",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Canterbury",
                      role = "aut"))
as necessary.
checkRd: (-1) fmgammagpd.Rd:183: Lost braces; missing escapes or markup?
   183 |  \item {nlumgammagpd} and {proflumgammagpd} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], sigmau, xi)}
       |                           ^
checkRd: (-1) fmgammagpdcon.Rd:181: Lost braces; missing escapes or markup?
   181 |  \item {nlumgammagpdcon} and {proflumgammagpdcon} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], xi)}
       |                              ^
checkRd: (-1) kernels.Rd:87: Lost braces
    87 | code{\link[evmix:kernels]{kd*}}  and \code{\link[evmix:kernels]{kp*}} give the
       |     ^
Maintainer: ‘Heath Blackmon <coleoguy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Heath",
                      family = "Blackmon",
                      role = c("aut", "cre"),
                      email = "coleoguy@gmail.com"),
               person(given = c("Richard", "H."),
                      family = "Adams",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘SuperMatrix.Rd’:
    \keyword{ SuperMatrix, concatenation, alignment }
Found the following files/directories:
  ‘sample .nwk’
Maintainer: ‘Juan Manuel Cabrera <juanmanuelcabrera1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Manuel"),
                      family = "Cabrera",
                      role = c("aut", "cre"),
                      email = "juanmanuelcabrera1@gmail.com"),
               person(given = "Federico",
                      family = "Giri",
                      role = "aut"))
as necessary.
checkRd: (-1) ShapeDist.Rd:18: Lost braces; missing escapes or markup?
    18 | Procrustes distance provides a measure of coincidence of two point sets {xi} and {yi}, i=1..N. For this purpose the variance of point deviations is calculated at the optimal superposition of the sets. It allows to characterize the shape proximity of a given simplex to shape of a reference one.
       |                                                                         ^
checkRd: (-1) ShapeDist.Rd:18: Lost braces; missing escapes or markup?
    18 | Procrustes distance provides a measure of coincidence of two point sets {xi} and {yi}, i=1..N. For this purpose the variance of point deviations is calculated at the optimal superposition of the sets. It allows to characterize the shape proximity of a given simplex to shape of a reference one.
       |                                                                                  ^
Found the following HTML validation problems:
convert_time_dt_to_plot_dt.html:50:1 (convert_time_dt_to_plot_dt.Rd:12): Warning: missing </ul> before </div>
convert_time_dt_to_plot_num.html:50:1 (convert_time_dt_to_plot_num.Rd:12): Warning: missing </ul> before </div>
convert_time_num_to_chr.html:46:1 (convert_time_num_to_chr.Rd:10): Warning: missing </ul> before </div>
convert_time_num_to_period.html:46:1 (convert_time_num_to_period.Rd:10): Warning: missing </ul> before </div>
get_connection_model_params.html:46:1 (get_connection_model_params.Rd:10): Warning: missing </ul> before </div>
mutate_to_log.html:54:1 (mutate_to_log.Rd:14): Warning: missing </ul> before </div>
round_to_half.html:46:1 (round_to_half.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
california_ev_model.html:57:1 (california_ev_model.Rd:15): Warning: missing </ul> before </div>
convert_time_num_to_period.html:46:1 (convert_time_num_to_period.Rd:10): Warning: missing </ul> before </div>
round_to_interval.html:50:1 (round_to_interval.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Edoardo Vignotto <edoardo.vignotto@unige.ch>’

The Description field contains
  Vignotto, E., & Engelke, S. (2018) <arXiv:1808.09902>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Grubinger <ThomasGrubinger@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Meryam Krit <meryam.krit@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Meryam",
                    family = "Krit",
                    role = c("aut", "cre"),
                    email = "meryam.krit@gmail.com")
as necessary.
Maintainer: ‘Marcio A. Diniz <marcio.diniz@cshs.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcio", "A."),
                    family = "Diniz",
                    role = c("aut", "cre"),
                    email = "marcio.diniz@cshs.org")
as necessary.
checkRd: (-1) stop_rule.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
dlt_curve_d1classical.html:71:1 (dlt_curve_d1classical.Rd:25): Warning: missing </ul> before </div>
dlt_curve_d1extended.html:68:1 (dlt_curve_d1extended.Rd:24): Warning: missing </ul> before </div>
dlt_curve_d1ph.html:96:1 (dlt_curve_d1ph.Rd:44): Warning: missing </ul> before </div>
Maintainer: ‘Quentin Lajaunie <quentin_lajaunie@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Baptiste",
                      family = "Hasse",
                      role = "aut"),
               person(given = "Quentin",
                      family = "Lajaunie",
                      role = c("aut", "cre"),
                      email = "quentin_lajaunie@hotmail.fr"))
as necessary.
Maintainer: ‘Guogen Shan <gshan@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guogen",
                      family = "Shan",
                      role = c("aut", "cre"),
                      email = "gshan@ufl.edu"),
               person(given = "Weizhen",
                      family = "Wang",
                      role = "aut",
                      email = "weizhen.wang@wright.edu"))
as necessary.
Specified C++14: please drop specification unless essential
Maintainer: ‘Chris J. Lloyd <c.lloyd@mbs.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chris", "J."),
                    family = "Lloyd",
                    role = c("aut", "cre"),
                    email = "c.lloyd@mbs.edu")
as necessary.
Found the following HTML validation problems:
AlphaIfDel.html:62:1 (AlphaIfDel.Rd:18): Warning: missing </ul> before </div>
LD_param_est.html:63:1 (LD_param_est.Rd:18): Warning: missing </ul> before </div>
PSD_item_params.html:58:1 (PSD_item_params.Rd:16): Warning: missing </ul> before </div>
asymprior.html:54:1 (asymprior.Rd:14): Warning: missing </ul> before </div>
generate_start_values.html:46:1 (generate_start_values.Rd:10): Warning: missing </ul> before </div>
grm_cumprob.html:54:1 (grm_cumprob.Rd:14): Warning: missing </ul> before </div>
objective_function_IRT.html:62:1 (objective_function_IRT.Rd:18): Warning: missing </ul> before </div>
params_to_target.html:50:1 (params_to_target.Rd:12): Warning: missing </ul> before </div>
slopeprior.html:58:1 (slopeprior.Rd:16): Warning: missing </ul> before </div>
softmax.html:46:1 (softmax.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Maintainer: ‘Jack Will <wujackwill@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jack",
                    family = "Will",
                    role = c("aut", "cre"),
                    email = "wujackwill@outlook.com")
as necessary.
Found the following HTML validation problems:
createCategorisedVar.html:56:1 (createCategorisedVar.Rd:15): Warning: missing </ul> before </div>
createSurvVar.html:62:1 (createSurvVar.Rd:19): Warning: missing </ul> before </div>
importCodes.html:51:1 (importCodes.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Nika Salia <2001salia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Irakli",
                      family = "Salia",
                      role = "aut",
                      email = "irakli.salia854@gmail.com"),
               person(given = "Nika",
                      family = "Salia",
                      role = "cre",
                      email = "2001salia@gmail.com"))
as necessary.
Maintainer: ‘Marc-Daniel Mildenberger <mildenberger.stat@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marc-Daniel",
                    family = "Mildenberger",
                    role = c("aut", "cre"),
                    email = "mildenberger.stat@web.de")
as necessary.
Found the following HTML validation problems:
excess_stats.html:93:1 (excess_stats.Rd:39): Warning: missing </ul> before </div>
fit_ar.html:62:1 (fit_ar.Rd:18): Warning: missing </ul> before </div>
get_demographics.html:68:1 (get_demographics.Rd:24): Warning: missing </ul> before </div>
noleap_yday.html:46:1 (noleap_yday.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
keep_marked_column.html:56:1 (keep_marked_column.Rd:14): Warning: missing </ul> before </div>
mark_rows.html:59:1 (mark_rows.Rd:16): Warning: missing </ul> before </div>
print_data.html:51:1 (print_data.Rd:13): Warning: missing </ul> before </div>
print_exclusion.html:55:1 (print_exclusion.Rd:14): Warning: missing </ul> before </div>
validate_columns.html:51:1 (validate_columns.Rd:12): Warning: missing </ul> before </div>
File ‘excursions/libs/excursions.so’:
  Found ‘printf’, possibly from ‘printf’ (C)
    Object: ‘CAMD.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘CAMD.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following HTML validation problems:
summary.excurobj.html:63:1 (summary.excurobj.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oliver",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Penelope",
                      family = "Hopkins",
                      role = "ctb"),
               person(given = "Robyn",
                      family = "Temple-Wood",
                      role = "ctb"),
               person(given = "Mayank",
                      family = "Lahiri",
                      role = "cph"))
as necessary.

The Description field contains
  (https://github.com/mayanklahiri/easyexif) library.
Please enclose URLs in angle brackets (<...>).
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
dbAppendTable.html:54:1 (dbAppendTable.Rd:14): Warning: missing </ul> before </div>
dbInsertUpdateByRow.html:58:1 (dbInsertUpdateByRow.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Eric Batista Ferreira <eric.ferreira@unifal-mg.edu.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eric", "Batista"),
                      family = "Ferreira",
                      role = c("aut", "cre"),
                      email = "eric.ferreira@unifal-mg.edu.br"),
               person(given = c("Portya", "Piscitelli"),
                      family = "Cavalcanti",
                      role = "aut"),
               person(given = c("Denismar", "Alves"),
                      family = "Nogueira",
                      role = "aut"))
as necessary.
checkRd: (-1) ccF.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:42: Lost braces
    42 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
Maintainer: ‘Eric Batista Ferreira <eric.ferreira@unifal-mg.edu.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eric", "Batista"),
                      family = "Ferreira",
                      role = c("aut", "cre"),
                      email = "eric.ferreira@unifal-mg.edu.br"),
               person(given = c("Portya", "Piscitelli"),
                      family = "Cavalcanti",
                      role = "aut"),
               person(given = c("Denismar", "Alves"),
                      family = "Nogueira",
                      role = "aut"))
as necessary.
checkRd: (-1) ccF.Rd:41: Lost braces
    41 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compare_benchmark_event.R’ ‘compare_benchmark_time.R’
Maintainer: ‘Vincent Goulet <vincent.goulet@act.ulaval.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:54:1 (inst/NEWS.Rd:22): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:120:1 (inst/NEWS.Rd:62): Warning: <h4> anchor "BUG-FIX" already defined
NEWS.html:148:1 (inst/NEWS.Rd:79): Warning: <h4> anchor "BUG-FIX" already defined
File ‘expint/libs/expint.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
CA_var_plot.html:123:1 (CA_var_plot.Rd:57): Warning: missing </ul> before </div>
MCA_biplot.html:123:1 (MCA_biplot.Rd:57): Warning: missing </ul> before </div>
MCA_ind_plot.html:113:1 (MCA_ind_plot.Rd:51): Warning: missing </ul> before </div>
MCA_var_plot.html:118:1 (MCA_var_plot.Rd:54): Warning: missing </ul> before </div>
PCA_ind_plot.html:113:1 (PCA_ind_plot.Rd:51): Warning: missing </ul> before </div>
PCA_var_plot.html:113:1 (PCA_var_plot.Rd:51): Warning: missing </ul> before </div>
ggind.html:90:1 (ggind.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘Ben Powell <ben.powell@york.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Powell",
                    role = c("aut", "cre"),
                    email = "ben.powell@york.ac.uk")
as necessary.
Maintainer: ‘Larisa Zamora-Matamoros <larisa@uo.edu.cu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Larisa",
                      family = "Zamora-Matamoros",
                      role = c("aut", "cre"),
                      email = "larisa@uo.edu.cu"),
               person(given = "Jorge",
                      family = "Diaz-Silvera",
                      role = "aut"))
as necessary.
Maintainer: ‘Rob J Hyndman <Rob.Hyndman@monash.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Rob", "J"),
                    family = "Hyndman",
                    role = c("aut", "cre"),
                    email = "Rob.Hyndman@monash.edu")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: www.exponentialsmoothing.net
    From: man/expsmooth-package.Rd
  URI: www.exponentialsmoothing.net
    From: man/freight.Rd
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_fct_adjs.R’ ‘compute_fct_adjs.Rd’ ‘guess_measure_sets.R’
    ‘mutate_expecvar.R’ ‘mutate_expecvar.Rd’ ‘mutate_metrics.R’
    ‘mutate_metrics.Rd’ ‘summarise_measures.R’ ‘summarise_measures.Rd’
    ‘validators.R’
Maintainer: ‘Huixia Judy Wang <judywang@gwu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Huixia", "Judy"),
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "judywang@gwu.edu")
as necessary.
Found the following HTML validation problems:
WeatherLoach.html:54:1 (WeatherLoach.Rd:14): Warning: missing </ul> before </div>
plot.batchMarkOptim.html:51:1 (plot.batchMarkOptim.Rd:12): Warning: missing </ul> before </div>
plot.batchMarkUnmarkOptim.html:51:1 (plot.batchMarkUnmarkOptim.Rd:12): Warning: missing </ul> before </div>
print.batchMarkOptim.html:51:1 (print.batchMarkOptim.Rd:12): Warning: missing </ul> before </div>
print.batchMarkUnmarkOptim.html:51:1 (print.batchMarkUnmarkOptim.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Greg McMahan <gmcmacran@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "McMahan",
                    role = c("aut", "cre"),
                    email = "gmcmacran@gmail.com")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("B", "N"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘Han Li <hli@szu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "hli@szu.edu.cn"),
               person(given = "Minxuan",
                      family = "Xu",
                      role = "aut"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"),
               person(given = "Xiaodan",
                      family = "Fan",
                      role = "aut"))
as necessary.
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suhadip",
                      family = "Datta",
                      role = "aut"),
               person(given = "Subhadip",
                      family = "Datta",
                      role = "cre",
                      email = "subhadipdatta007@gmail.com"))
as necessary.
Maintainer: ‘Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tymoteusz",
                    family = "Wolodzko",
                    role = c("aut", "cre"),
                    email = "twolodzko+extradistr@gmail.com")
as necessary.
Found the following HTML validation problems:
Rademacher.html:48:1 (Rademacher.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ttf_import.html:54:1 (ttf_import.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Chester C. Deocaris <ccdeocaris@pup.edu.ph>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chester", "C."),
                    family = "Deocaris",
                    role = c("aut", "cre"),
                    email = "ccdeocaris@pup.edu.ph")
as necessary.

The Description field contains
  paper of Molina (2019) <arXiv:1912.01783>, Seager (2013)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Francesco Bartolucci <francesco.bartolucci@unipg.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francesco",
                      family = "Bartolucci",
                      role = c("aut", "cre"),
                      email = "francesco.bartolucci@unipg.it"),
               person(given = "Antonio",
                      family = "Forcina",
                      role = "aut"))
as necessary.

The Description field contains
  association parameters; see Forcina (2019) <arXiv:1910.13848>. These
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) MatIn.Rd:6: Lost braces
     6 | Computation of aggregation matrices for generalized interactions that are used in code{\link{extRC}} to estimate extended RC models.
       |                                                                                       ^
checkRd: (-1) plot.Rd:5: Lost braces
     5 | \description{It plots the output of code{\link{extRC}} function for a vector of lambda values.}
       |                                         ^
checkRd: (-1) print.Rd:5: Lost braces
     5 | \description{Given the output of code{\link{extRC}} function, it is written in a readable form.}
       |                                      ^
checkRd: (-1) summary.Rd:5: Lost braces
     5 | \description{Summary method for the output of code{\link{extRC}} function.}
       |                                                   ^
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.
Maintainer: ‘Maxime Taillardat <maxime.taillardat@meteo.fr>’

The Description field contains
  index in Taillardat et al. (2019) <arXiv:1905.04022>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nadezda Frolova <nfrolova@ualberta.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nadezda",
                      family = "Frolova",
                      role = c("aut", "cre"),
                      email = "nfrolova@ualberta.ca"),
               person(given = "Ivor",
                      family = "Cribben",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
scale_exuber_manual.html:83:1 (scale_exuber_manual.Rd:34): Warning: missing </ul> before </div>
tidy.ds_radf.html:51:1 (tidy.ds_radf.Rd:12): Warning: missing </ul> before </div>
tidy_join.html:56:1 (tidy_join.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Tjebo Heeren <tjebo@gmx.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘amd.Rd’:
    https://doi.org/10.5061/dryad.nvx0k6dqg
    https://doi.org/10.1001/jamaophthalmol.2020.5044
  File ‘amd2.Rd’:
    https://doi.org/10.5061/dryad.97r9289
    https://doi.org/10.1136/bmjopen-2018-027441
  File ‘amd3.Rd’:
    https://doi.org/10.5061/dryad.9cnp5hqfm
    https://doi.org/10.1136/bjophthalmol-2020-317161
  File ‘amdoct.Rd’:
    https://doi.org/10.1038/s41591-018-0107-6
    https://doi.org/10.1038/s41591-020-0867-7
    https://doi.org/10.5061/dryad.2rbnzs7m4
    https://doi.org/10.1016/j.ophtha.2020.09.025
  File ‘dme.Rd’:
    https://doi.org/10.5061/dryad.pzgmsbcfw
    https://doi.org/10.1038/s41433-020-1048-0
Maintainer: ‘Austin Hurst <ajhurst@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Barthelme",
                      role = "aut",
                      email = "simon.barthelme@gipsa-lab.fr"),
               person(given = "Austin",
                      family = "Hurst",
                      role = "cre",
                      email = "ajhurst@uwaterloo.ca"))
as necessary.
Found the following HTML validation problems:
parse_snellen.html:46:1 (parse_snellen.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) codePasses.Rd:64: Escaped LaTeX specials: \#
Found the following HTML validation problems:
log_message.html:62:1 (log_message.Rd:18): Warning: missing </ul> before </div>
logging.html:55:1 (logging.Rd:14): Warning: missing </ul> before </div>
plot_with_seed.html:95:1 (plot_with_seed.Rd:40): Warning: missing </ul> before </div>
Maintainer: ‘Timothy Koscik <timothy-koscik@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "R."),
                      family = "Koscik",
                      role = c("aut", "cre", "cph")),
               person(given = "Timothy",
                      family = "Koscik",
                      role = "cre",
                      email = "timothy-koscik@uiowa.edu"))
as necessary.
Found the following HTML validation problems:
checkIndex.html:50:1 (checkIndex.Rd:12): Warning: missing </ul> before </div>
fragilityRow.html:54:1 (fragilityRow.Rd:14): Warning: missing </ul> before </div>
ridgeR2.html:56:1 (ridgeR2.Rd:16): Warning: missing </ul> before </div>
checkRd: (-1) EEzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
ezmmek_calc_mm_fit.html:54:1 (ezmmek_calc_mm_fit.Rd:14): Warning: missing </ul> before </div>
ezmmek_calc_std_lm_buffer.html:46:1 (ezmmek_calc_std_lm_buffer.Rd:10): Warning: missing </ul> before </div>
ezmmek_calc_std_lm_homo.html:46:1 (ezmmek_calc_std_lm_homo.Rd:10): Warning: missing </ul> before </div>
ezmmek_calc_std_lm_homo_buffer.html:46:1 (ezmmek_calc_std_lm_homo_buffer.Rd:10): Warning: missing </ul> before </div>
ezmmek_calibrate_activities.html:54:1 (ezmmek_calibrate_activities.Rd:14): Warning: missing </ul> before </div>
ezmmek_std_lm.html:54:1 (ezmmek_std_lm.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ez_png.html:94:1 (ez_png.Rd:40): Warning: missing </ul> before </div>
ez_server.html:46:1 (ez_server.Rd:10): Warning: missing </ul> before </div>
ez_ui.html:46:1 (ez_ui.Rd:10): Warning: missing </ul> before </div>
get_incr.html:47:1 (get_incr.Rd:10): Warning: missing </ul> before </div>
quick_facet.html:55:1 (quick_facet.Rd:14): Warning: missing </ul> before </div>
save_png.html:70:1 (save_png.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Michael A. Lawrence <mike.lwrnc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "A."),
                    family = "Lawrence",
                    role = c("aut", "cre"),
                    email = "mike.lwrnc@gmail.com")
as necessary.
checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jin Kim <jin.m.kim@yale.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jill Lundell <jflundell@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"),
               person(given = "Chaoyu",
                      family = "Yu",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Hoff",
                    role = c("aut", "cre"),
                    email = "peter.hoff@duke.edu")
as necessary.

The Description field contains
  construction. See Hoff (2019) <arXiv:1907.12589> "Smaller p-values via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Martin Ondrus <mondrus@ualberta.ca>’

The Description field contains
  (2021) <arXiv:2103.06347>. For a more detailed explanation and applied
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘GLARMA.R’ ‘GLARMA.Rd’ ‘INGARCH.R’ ‘INGARCH.Rd’ ‘fitted.GLARMA.Rd’
    ‘fitted.INGARCH.Rd’ ‘forecast.GLARMA.Rd’ ‘forecast.INGARCH.Rd’
    ‘glance.GLARMA.Rd’ ‘glance.INGARCH.Rd’ ‘residuals.GLARMA.Rd’
    ‘residuals.INGARCH.Rd’ ‘tidy.GLARMA.Rd’ ‘tidy.INGARCH.Rd’
Found the following HTML validation problems:
IRF.ARIMA.html:59:1 (IRF.ARIMA.Rd:16): Warning: missing </ul> before </div>
IRF.VAR.html:70:1 (IRF.VAR.Rd:20): Warning: missing </ul> before </div>
IRF.VECM.html:70:1 (IRF.VECM.Rd:20): Warning: missing </ul> before </div>
common_xregs.html:113:1 (common_xregs.Rd:51): Warning: missing </ul> before </div>
Maintainer: ‘Elizabeth Bersson <elizabeth.bersson@duke.edu>’

The Description field contains
  <arXiv:2204.08122> "Optimal Conformal Prediction for Small Areas".
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) fmCov.Rd:37: Lost braces; missing escapes or markup?
    37 | where, \code{alpha(i)} is the intercept, \code{f(t)} is a {K x 1} vector of 
       |                                                           ^
checkRd: (-1) plot.ffm.Rd:82: Lost braces; missing escapes or markup?
    82 | \item{las}{one of {0, 1, 2, 3} to set the direction of axis labels, same as
       |                   ^
checkRd: (-1) summary.ffm.Rd:39: Lost braces; missing escapes or markup?
    39 | Returned object is of class {summary.ffm}.
       |                             ^
Found the following HTML validation problems:
calcFLAM.html:76:1 (calcFLAM.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Koulik Khamaru <koulik123@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Koulik",
                      family = "Khamaru",
                      role = c("aut", "cre"),
                      email = "koulik123@gmail.com"),
               person(given = "Rahul",
                      family = "Mazumder",
                      role = "aut",
                      email = "rahul.mazumder@gmail.com"))
as necessary.
Maintainer: ‘Campo Elias Pardo <cepardot@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Campo", "Elias"),
                      family = "Pardo",
                      role = c("aut", "cre"),
                      email = "cepardot@unal.edu.co"),
               person(given = c("Pedro", "Cesar", "del"),
                      family = "Campo",
                      role = "aut",
                      email = "pcdelcampon@unal.edu.co"),
               person(given = c("Camilo", "Jose"),
                      family = "Torres",
                      role = "aut",
                      email = "cjtorresj@unal.edu.co"),
               person(given = c("with", "the", "contributions", "from.", "Ivan"),
                      family = "Diaz",
                      role = "aut",
                      email = "ildiazm@unal.edu.co"),
               person(given = "Mauricio",
                      family = "Sadinle",
                      role = "aut",
                      email = "msadinleg@unal.edu.co"),
               person(given = "Jhonathan",
                      family = "Medina.",
                      role = "aut",
                      email = "jmedinau@unal.edu.co"))
as necessary.
checkRd: (-1) fviz_nbclust.Rd:75: Lost braces; missing escapes or markup?
    75 | (2001) proposed: "the smallest k such that gap(k) >= gap(k+1) - s_{k+1}". 
       |                                                                   ^
checkRd: (-1) fviz_nbclust.Rd:77: Lost braces; missing escapes or markup?
    77 | SE.factor*s_{k+1}" where SE.factor is a numeric value which can be 1
       |             ^
Maintainer: ‘Francois Husson <francois.husson@institut-agro.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Thuleau",
                      role = "aut"),
               person(given = "Francois",
                      family = "Husson",
                      role = c("aut", "cre"),
                      email = "francois.husson@institut-agro.fr"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Investigate.Rd: CA
  classif.Rd: HCPC
  description.Rd: CA
  factoGraph.Rd: CA
  graphHab.Rd: CA
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dibaba Bayisa Gemechu <diboobayu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dibaba", "Bayisa"),
                      family = "Gemechu",
                      role = c("aut", "cre"),
                      email = "diboobayu@gmail.com"),
               person(given = c("Legesse", "Kassa"),
                      family = "Debusho",
                      role = "aut"),
               person(given = "Linda",
                      family = "Haines",
                      role = "aut"))
as necessary.
Maintainer: ‘Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>’

The Description field contains
  (2022) <arXiv:2201.00339>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
create_data.html:56:1 (create_data.Rd:18): Warning: missing </ul> before </div>
rank_via_null.html:50:1 (rank_via_null.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
factorH_dataset.html:50:1 (factorH_dataset.Rd:25): Warning: missing </ul> before </div>
factorH_reference.html:358:1 (factorH_reference.Rd:248): Warning: missing </ul> before </div>
factorH_syntax.html:91:1 (factorH_syntax.Rd:61): Warning: missing </ul> before </div>
Maintainer: ‘Eric Leifer <Eric.Leifer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eric",
                      family = "Leifer",
                      role = c("aut", "cre"),
                      email = "eric.leifer@gmail.com"),
               person(given = "James",
                      family = "Troendle",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    minor changes
Found the following HTML validation problems:
digested_is.html:46:1 (digested_is.Rd:10): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SMART.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
ClustPredictor.html:172:1 (ClustPredictor.Rd:134): Warning: <h5> anchor "Usage" already defined
ClustPredictor.html:178:1 (ClustPredictor.Rd:138): Warning: <h5> anchor "Arguments" already defined
IDEA.html:212:1 (IDEA.Rd:163): Warning: <h5> anchor "Usage" already defined
IDEA.html:218:1 (IDEA.Rd:167): Warning: <h5> anchor "Arguments" already defined
IDEA.html:232:1 (IDEA.Rd:175): Warning: <h5> anchor "Returns" already defined
IDEA.html:250:1 (IDEA.Rd:185): Warning: <h5> anchor "Usage" already defined
IDEA.html:256:1 (IDEA.Rd:189): Warning: <h5> anchor "Arguments" already defined
IDEA.html:270:1 (IDEA.Rd:197): Warning: <h5> anchor "Returns" already defined
IDEA.html:288:1 (IDEA.Rd:207): Warning: <h5> anchor "Usage" already defined
IDEA.html:294:1 (IDEA.Rd:211): Warning: <h5> anchor "Arguments" already defined
SMART.html:221:1 (SMART.Rd:179): Warning: <h5> anchor "Usage" already defined
SMART.html:227:1 (SMART.Rd:183): Warning: <h5> anchor "Returns" already defined
SMART.html:247:1 (SMART.Rd:195): Warning: <h5> anchor "Usage" already defined
SMART.html:253:1 (SMART.Rd:199): Warning: <h5> anchor "Arguments" already defined
SMART.html:292:1 (SMART.Rd:229): Warning: <h5> anchor "Returns" already defined
SMART.html:309:1 (SMART.Rd:238): Warning: <h5> anchor "Usage" already defined
SMART.html:315:1 (SMART.Rd:242): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘David Causeur <david.causeur@agrocampus-ouest.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emeline",
                      family = "Perthame",
                      role = "aut",
                      comment = "Institut Pasteur, Paris, France"),
               person(given = "Chloe",
                      family = "Friguet",
                      role = "aut",
                      comment = "Universite de Bretagne Sud, Vannes, France"),
               person(given = "David",
                      family = "Causeur",
                      role = c("aut", "cre"),
                      email = "david.causeur@agrocampus-ouest.fr",
                      comment = "Agrocampus\n    Ouest, Rennes, France"))
as necessary.
Maintainer: ‘Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Aucoin",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Petzoldt",
                      role = "cre",
                      email = "thomas.petzoldt@tu-dresden.de"))
as necessary.
checkRd: (-1) FADPclust.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kjetil B Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("compiled", "by", "Kjetil", "B"),
                      family = "Halvorsen",
                      role = "aut"),
               person(given = c("Kjetil", "B"),
                      family = "Halvorsen",
                      role = "cre",
                      email = "kjetil1001@gmail.com"))
as necessary.
checkRd: (-1) happy.Rd:14: Lost braces
    14 |                  code{Pretty happy} <  \code{Very happy}}
       |                      ^
Maintainer: ‘Michel Lang <michellang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michel",
                    family = "Lang",
                    role = c("aut", "cre"),
                    email = "michellang@gmail.com")
as necessary.
Found the following HTML validation problems:
visualizeGraph.html:51:1 (visualizeGraph.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Carlos Santos-Mangudo   <carlossantos.csm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Santos-Mangudo",
                    role = c("aut", "cre"),
                    email = "carlossantos.csm@gmail.com")
as necessary.
Maintainer: ‘Jakub Wiśniewski <jakwisn@gmail.com>’

The Description field contains
  <arXiv:2104.00507>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Error(s) in re-building vignettes:
  ...
--- re-building ‘Advanced_tutorial.Rmd’ using rmarkdown
--- finished re-building ‘Advanced_tutorial.Rmd’

--- re-building ‘Basic_tutorial.Rmd’ using rmarkdown

Quitting from Basic_tutorial.Rmd:254-257 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `rep()`:
! attempt to replicate an object of type 'object'
---
Backtrace:
    ▆
 1. ├─base::plot(fheatmap, text_size = 3)
 2. └─fairmodels:::plot.fairness_heatmap(fheatmap, text_size = 3)
 3.   └─base::ifelse(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Basic_tutorial.Rmd' failed with diagnostics:
attempt to replicate an object of type 'object'
--- failed re-building ‘Basic_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘Basic_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fairness’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fairness.Rcheck/00install.out’ for details.
Maintainer: ‘Joe Delaney <delaneyj@musc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joe",
                    family = "Delaney",
                    role = c("aut", "cre"),
                    email = "delaneyj@musc.edu")
as necessary.
Maintainer: ‘Barbara Bodinier <barbara.bodinier@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Barbara",
                    family = "Bodinier",
                    role = c("aut", "cre"),
                    email = "barbara.bodinier@gmail.com")
as necessary.

The Description field contains
  (B Bodinier et al (2021) <arXiv:2106.02521>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) fra_sf.Rd:22: Lost braces; missing escapes or markup?
    22 | A map of France as {sf} object. Can be used as dataset or for maps
       |                    ^
Maintainer: ‘Alfi Nurrahmah <221810140@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alfi",
                    family = "Nurrahmah",
                    role = c("aut", "cre"),
                    email = "221810140@stis.ac.id")
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yun-Hee",
                      family = "Choi",
                      role = c("aut", "cre"),
                      email = "yun-hee.choi@schulich.uwo.ca"),
               person(given = "Karen",
                      family = "Kopciuk",
                      role = "aut"),
               person(given = "Wenqing",
                      family = "He",
                      role = "aut"),
               person(given = "Laurent",
                      family = "Briollais",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dot-check_class_level_plausibility.html:123:1 (dot-check_class_level_plausibility.Rd:60): Warning: missing </ul> before </div>
dot-check_feature_availability.html:51:1 (dot-check_feature_availability.Rd:12): Warning: missing </ul> before </div>
dot-check_input_identifier_column.html:119:1 (dot-check_input_identifier_column.Rd:58): Warning: missing </ul> before </div>
dot-check_input_plot_args.html:206:1 (dot-check_input_plot_args.Rd:114): Warning: missing </ul> before </div>
dot-check_outcome_type_plausibility.html:98:1 (dot-check_outcome_type_plausibility.Rd:41): Warning: missing </ul> before </div>
dot-check_survival_time_plausibility.html:95:1 (dot-check_survival_time_plausibility.Rd:42): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Aucoin",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Petzoldt",
                      role = "cre",
                      email = "thomas.petzoldt@tu-dresden.de"))
as necessary.
Found the following HTML validation problems:
FAmle-internal.html:112:1 (FAmle-internal.Rd:49): Warning: missing </ul> before </div>
Maintainer: ‘David Causeur <David.Causeur@agrocampus-ouest.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Causeur",
                      role = c("aut", "cre"),
                      email = "david.causeur@agrocampus-ouest.fr"),
               person(given = "Chloe",
                      family = "Friguet",
                      role = "aut"),
               person(given = "Magalie",
                      family = "Houee-Bigot",
                      role = "aut"),
               person(given = "Maela",
                      family = "Kloareg",
                      role = "aut"))
as necessary.
checkRd: (-1) pi0FAMT.Rd:18: Lost braces
    18 | \code{pi0}{The estimated proportion \code{pi0} of null hypotheses.}}
       |           ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.FAMTdata.Rd: impute.knn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Guy J. Abel <g.j.abel@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'library' or 'require' calls not declared from:
  ‘RColorBrewer’ ‘colorspace’ ‘zoo’
File ‘fansi/libs/fansi.so’:
  Found non-API call to R: ‘R_nchar’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Ali Ahani <ali.ahani66@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ali",
                      family = "Ahani",
                      role = c("aut", "cre"),
                      email = "a_ahani@sbu.ac.ir",
                      comment = c(ORCID = "0000-0002-1441-0444")),
               person(given = c("S.", "Saeid", "Mousavi"),
                      family = "Nadoushani",
                      role = "aut",
                      email = "sa_mousavi@sbu.ac.ir",
                      comment = c(ORCID = "0000-0001-6679-5553")))
as necessary.
Maintainer: ‘Paul Rougieux <paul.rougieux@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "C."),
                      family = "J.",
                      role = "aut"),
               person(given = "Markus",
                      family = "Gesmann",
                      role = "aut"),
               person(given = "Filippo",
                      family = "Gheri",
                      role = "aut"),
               person(given = "Paul",
                      family = "Rougieux",
                      role = c("aut", "cre"),
                      email = "paul.rougieux@gmail.com"),
               person(given = "Sebastian",
                      family = "Campbell",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
cache.html:58:1 (cache.Rd:16): Warning: missing </ul> before </div>
change_case.html:72:1 (change_case.Rd:23): Warning: missing </ul> before </div>
ebind.html:60:1 (ebind.Rd:17): Warning: missing </ul> before </div>
fillCountryCode.html:56:1 (fillCountryCode.Rd:15): Warning: missing </ul> before </div>
get_fao.html:63:1 (get_fao.Rd:21): Warning: missing </ul> before </div>
overlap.html:68:1 (overlap.Rd:21): Warning: missing </ul> before </div>
read_dataset_dimension.html:55:1 (read_dataset_dimension.Rd:16): Warning: missing </ul> before </div>
translate_countrycodes.html:79:1 (translate_countrycodes.Rd:34): Warning: missing </ul> before </div>
Found the following HTML validation problems:
faq-shiny.html:70:1 (faq-shiny.Rd:25): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FarmTest.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Found the following HTML validation problems:
plot.fars_density.html:55:1 (plot.fars_density.Rd:14): Warning: missing </ul> before </div>
plot.fars_scenario.html:55:1 (plot.fars_scenario.Rd:14): Warning: missing </ul> before </div>
plot_factors.mldfm.html:62:1 (plot_factors.mldfm.Rd:18): Warning: missing </ul> before </div>
plot_loadings.mldfm.html:58:1 (plot_loadings.mldfm.Rd:16): Warning: missing </ul> before </div>
plot_residuals.mldfm.html:54:1 (plot_residuals.mldfm.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Emilie Lebarbier <emilie.lebarbier@agroparistech.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xavier",
                      family = "Collilieux",
                      role = "aut"),
               person(given = "Emilie",
                      family = "Lebarbier",
                      role = c("aut", "cre"),
                      email = "emilie.lebarbier@agroparistech.fr"),
               person(given = "Stephane",
                      family = "Robin",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1505.05660>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘FASeg-package.Rd’:
    \keyword{Dynamic programming; EM algorithm; Factor [TRUNCATED]
Maintainer: ‘Peter W. MacDonald <pwmacdon@umich.edu>’

The Description field contains
  Zhu and Levina (2022+) <arXiv:2210.07491>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jonas Striaukas <jonas.striaukas@gmail.com>’

The Description field contains
  Striaukas (2023) <arXiv:2307.13364>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Found the following HTML validation problems:
AdaptiveAvgPool.html:50:1 (AdaptiveAvgPool.Rd:12): Warning: missing </ul> before </div>
AddChannels.html:46:1 (AddChannels.Rd:10): Warning: missing </ul> before </div>
Flatten.html:46:1 (Flatten.Rd:10): Warning: missing </ul> before </div>
GANDiscriminativeLR.html:46:1 (GANDiscriminativeLR.Rd:10): Warning: missing </ul> before </div>
ImageDataLoaders_from_folder.html:113:1 (ImageDataLoaders_from_folder.Rd:51): Warning: missing </ul> before </div>
L.html:46:1 (L.Rd:10): Warning: missing </ul> before </div>
ResNet.html:83:1 (ResNet.Rd:33): Warning: missing </ul> before </div>
TfmdLists.html:46:1 (TfmdLists.Rd:10): Warning: missing </ul> before </div>
XResNet.html:66:1 (XResNet.Rd:20): Warning: missing </ul> before </div>
combined_flat_anneal.html:60:1 (combined_flat_anneal.Rd:16): Warning: missing </ul> before </div>
discriminator.html:68:1 (discriminator.Rd:24): Warning: missing </ul> before </div>
icevision_IAACropAndPad.html:78:1 (icevision_IAACropAndPad.Rd:30): Warning: missing </ul> before </div>
mask_from_blur.html:62:1 (mask_from_blur.Rd:18): Warning: missing </ul> before </div>
show_image.html:113:1 (show_image.Rd:51): Warning: missing </ul> before </div>
sort.html:55:1 (sort.Rd:15): Warning: missing </ul> before </div>
to_matrix.html:50:1 (to_matrix.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Eric C. Chi <ecchi1105@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Studer, and Baraniuk (2016) <arXiv:1411.3406>. Schemes such as Fast
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Aaron Molstad <molst029@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Molstad",
                    role = c("aut", "cre"),
                    email = "molst029@umn.edu")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:457:1 (inst/NEWS.Rd:271): Warning: missing </ul> before </div>
NEWS.html:130:1 (inst/NEWS.Rd:74): Warning: <h4> anchor "New-Features" already defined
NEWS.html:147:1 (inst/NEWS.Rd:83): Warning: <h4> anchor "New-Features" already defined
NEWS.html:171:1 (inst/NEWS.Rd:98): Warning: <h4> anchor "Significant-User-Visible-Changes" already defined
NEWS.html:190:1 (inst/NEWS.Rd:110): Warning: <h4> anchor "Bug-Fixes" already defined
NEWS.html:212:1 (inst/NEWS.Rd:124): Warning: <h4> anchor "New-Features" already defined
NEWS.html:255:1 (inst/NEWS.Rd:150): Warning: <h4> anchor "Significant-User-Visible-Changes" already defined
NEWS.html:287:1 (inst/NEWS.Rd:172): Warning: <h4> anchor "Bug-Fixes" already defined
NEWS.html:305:1 (inst/NEWS.Rd:183): Warning: <h4> anchor "New-Features" already defined
NEWS.html:319:1 (inst/NEWS.Rd:191): Warning: <h4> anchor "Installation" already defined
NEWS.html:337:1 (inst/NEWS.Rd:201): Warning: <h4> anchor "Significant-User-Visible-Changes" already defined
NEWS.html:379:1 (inst/NEWS.Rd:231): Warning: <h4> anchor "New-Features" already defined
NEWS.html:392:1 (inst/NEWS.Rd:238): Warning: <h4> anchor "Installation" already defined
NEWS.html:410:1 (inst/NEWS.Rd:248): Warning: <h4> anchor "Bug-Fixes" already defined
NEWS.html:422:1 (inst/NEWS.Rd:254): Warning: <h4> anchor "New-Features" already defined
NEWS.html:438:1 (inst/NEWS.Rd:263): Warning: <h4> anchor "Installation" already defined
Found the following HTML validation problems:
get_window.html:54:1 (get_window.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Dean Bodenham <deanbodenhambsse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Felipe", "Llinares"),
                      family = "Lopez",
                      role = "aut"),
               person(given = "Dean",
                      family = "Bodenham",
                      role = c("aut", "cre"),
                      email = "deanbodenhambsse@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
kkk.html:52:1 (kkk.Rd:12): Warning: missing </ul> before </div>
loglikcub00.html:59:1 (loglikcub00.Rd:16): Warning: missing </ul> before </div>
loglikcub0q.html:64:1 (loglikcub0q.Rd:19): Warning: missing </ul> before </div>
loglikcubp0.html:64:1 (loglikcubp0.Rd:19): Warning: missing </ul> before </div>
loglikcubpq.html:69:1 (loglikcubpq.Rd:22): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fasterElasticNet.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
dot-maxVal.html:46:1 (dot-maxVal.Rd:10): Warning: missing </ul> before </div>
dot-minVal.html:46:1 (dot-minVal.Rd:10): Warning: missing </ul> before </div>
dot-nlevels.html:46:1 (dot-nlevels.Rd:10): Warning: missing </ul> before </div>
dot-plot.html:50:1 (dot-plot.Rd:12): Warning: missing </ul> before </div>
dot-zonal.html:66:1 (dot-zonal.Rd:20): Warning: missing </ul> before </div>
dot-zonalByVector.html:58:1 (dot-zonalByVector.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pspline_setting.html:75:1 (pspline_setting.Rd:27): Warning: missing </ul> before </div>
select_knots.html:61:1 (select_knots.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Alexander W Blocker <ablocker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alexander", "W"),
                    family = "Blocker",
                    role = c("aut", "cre"),
                    email = "ablocker@gmail.com")
as necessary.
Found the following HTML validation problems:
fastglcm.html:47:1 (fastglcm.Rd:113): Warning: <h3> anchor "Methods" already defined
fastglcm.html:93:1 (fastglcm.Rd:136): Warning: <h5> anchor "Usage" already defined
fastglcm.html:155:1 (fastglcm.Rd:182): Warning: <h5> anchor "Usage" already defined
fastglcm.html:161:1 (fastglcm.Rd:186): Warning: <h5> anchor "Arguments" already defined
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
extract-methods.html:56:1 (extract-methods.Rd:16): Warning: missing </ul> before </div>
predict.fastglm.html:81:1 (predict.fastglm.Rd:34): Warning: missing </ul> before </div>
print.html:51:1 (print.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Giri Gopalan <gopalan88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giri",
                      family = "Gopalan",
                      role = c("aut", "cre"),
                      email = "gopalan88@gmail.com"),
               person(given = "Luke",
                      family = "Bornn",
                      role = "aut"))
as necessary.
Maintainer: ‘Steven T. Garren <garrenst@jmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "T."),
                    family = "Garren",
                    role = c("aut", "cre"),
                    email = "garrenst@jmu.edu")
as necessary.
Maintainer: ‘Stephen R. Haptonstahl <srh@haptonstahl.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stephen", "R."),
                    family = "Haptonstahl",
                    role = c("aut", "cre"),
                    email = "srh@haptonstahl.org")
as necessary.
Maintainer: ‘Xun Li <lixun910@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xun",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "lixun910@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Gaston Besanson <besanson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gaston",
                    family = "Besanson",
                    role = c("aut", "cre"),
                    email = "besanson@gmail.com")
as necessary.
Found the following HTML validation problems:
aggregateEM.html:53:1 (aggregateEM.Rd:15): Warning: missing </ul> before </div>
plot.fastLink.html:57:1 (plot.fastLink.Rd:15): Warning: missing </ul> before </div>
print.inspectEM.html:51:1 (print.inspectEM.Rd:12): Warning: missing </ul> before </div>
summary.fastLink.html:71:1 (summary.fastLink.Rd:23): Warning: missing </ul> before </div>
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                ^
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                     ^
Maintainer: ‘Mathieu Steijn <m.p.a.steijn@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mathieu",
                    family = "Steijn",
                    role = c("aut", "cre"),
                    email = "m.p.a.steijn@uu.nl")
as necessary.
Found the following HTML validation problems:
key_missing.html:48:1 (key_missing.Rd:13): Warning: missing </ul> before </div>
Maintainer field differs from that derived from Authors@R
  Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’
  Authors@R:  ‘Simon Urbanek <Simon.Urbanek@r-project.org>’
File ‘fastmatch/libs/fastmatch.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘EXTPTR_PTR’, ‘NAMED’, ‘OBJECT’,
    ‘SETLENGTH’, ‘SET_NAMED’, ‘STRING_PTR’, ‘VECTOR_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Martin Skogholt <m.skogholt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Skogholt",
                    role = c("aut", "cre"),
                    email = "m.skogholt@gmail.com")
as necessary.
Found the following HTML validation problems:
updateFNB.html:80:1 (updateFNB.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Georg",
                    family = "Hahn",
                    role = c("aut", "cre"),
                    email = "ghahn@hsph.harvard.edu")
as necessary.
Found the following HTML validation problems:
f_mutate.html:133:1 (f_mutate.Rd:85): Warning: missing </ul> before </div>
f_reframe.html:122:1 (f_reframe.Rd:76): Warning: missing </ul> before </div>
list_tidy.html:57:1 (list_tidy.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fastqc_install.html:52:1 (fastqc_install.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
information.html:50:1 (information.Rd:12): Warning: missing </ul> before </div>
maxLik2.html:55:1 (maxLik2.Rd:14): Warning: missing </ul> before </div>
plot.maxLik2.html:67:1 (plot.maxLik2.Rd:21): Warning: missing </ul> before </div>
checkRd: (-1) update_nhl_db.Rd:51-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_nhl_db.Rd:54-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_phf_db.Rd:51-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_phf_db.Rd:54-57: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Stefan Kloessner <S.Kloessner@mx.uni-saarland.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lampros Mouselimis <mouselimislampros@gmail.com>’

The Description field contains
  Matthijs Douze, Herve Jegou, Tomas Mikolov, 2016, <arXiv:1612.03651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "simon.urbanek@r-project.org")
as necessary.
Found the following HTML validation problems:
internal.html:82:1 (internal.Rd:30): Warning: missing </ul> before </div>
penalty_scaler.html:62:1 (penalty_scaler.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Dominic Grün <dominic.gruen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dominic",
                    family = "Grün",
                    role = c("aut", "cre"),
                    email = "dominic.gruen@gmail.com")
as necessary.
checkRd: (-1) Error-Classes.Rd:107-119: Lost braces
   107 |   \item \code{do_verbose(response, template)} {
       |                                               ^
checkRd: (-1) Error.Rd:33-45: Lost braces
    33 |   \item \code{do(response, mssg)} {
       |                                   ^
Found the following HTML validation problems:
xue_microbiome_sample.html:61:1 (xue_microbiome_sample.Rd:17): Warning: missing </ul> before </div>
xue_species_info.html:57:1 (xue_species_info.Rd:16): Warning: missing </ul> before </div>
xue_species_similarity.html:51:1 (xue_species_similarity.Rd:11): Warning: missing </ul> before </div>
xue_species_tree.html:47:1 (xue_species_tree.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oliver",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Alex",
                      family = "Bellos",
                      role = "cph"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md

The Description field contains
  (http://pages.bloomsbury.com/favouritenumber).
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Davide Altomare <davide.altomare@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Davide",
                      family = "Altomare",
                      role = c("aut", "cre"),
                      email = "davide.altomare@gmail.com"),
               person(given = "Guido",
                      family = "Consonni",
                      role = "aut"),
               person(given = "Luca",
                      family = "La Rocca",
                      role = "aut"))
as necessary.
Maintainer: ‘Luca Agnelli  <luca.agnelli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Andronache",
                      role = "aut",
                      email = "adi.andronache@gmail.com"),
               person(given = "Luca",
                      family = "Agnelli",
                      role = c("aut", "cre"),
                      email = "luca.agnelli@gmail.com"))
as necessary.
checkRd: (-1) FBN.histogramMaxima.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:40: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Tobias Setz <tobias.setz@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diethelm",
                      family = "Wuertz",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Setz",
                      role = "cre",
                      email = "tobias.setz@live.com"))
as necessary.
checkRd: (-1) fbad_copy_ad.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_ad.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) fbad_copy_adset.Rd:34: Lost braces; missing escapes or markup?
    34 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_adset.Rd:36: Lost braces; missing escapes or markup?
    36 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) fbad_copy_campaign.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_campaign.Rd:33: Lost braces; missing escapes or markup?
    33 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
Found the following HTML validation problems:
fbad_assign_users_to_account.html:63:1 (fbad_assign_users_to_account.Rd:21): Warning: missing </ul> before </div>
fbad_get_adaccounts.html:62:1 (fbad_get_adaccounts.Rd:18): Warning: missing </ul> before </div>
fbad_get_client_ad_accounts.html:68:1 (fbad_get_client_ad_accounts.Rd:24): Warning: missing </ul> before </div>
fbad_get_client_pages.html:62:1 (fbad_get_client_pages.Rd:18): Warning: missing </ul> before </div>
fbad_get_owned_pages.html:62:1 (fbad_get_owned_pages.Rd:18): Warning: missing </ul> before </div>
fbad_request_next_page.html:46:1 (fbad_request_next_page.Rd:10): Warning: missing </ul> before </div>
is.FB_Ad_Account.html:46:1 (is.FB_Ad_Account.Rd:10): Warning: missing </ul> before </div>
print.FB_Ad_Account.html:51:1 (print.FB_Ad_Account.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) plot.fbroc.conf.Rd:5: Lost braces
     5 | \title{Plots function for object of class{fbroc.conf}}
       |                                          ^
Maintainer: ‘Riko Kelter <riko_k@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riko",
                    family = "Kelter",
                    role = c("aut", "cre"),
                    email = "riko_k@gmx.de")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
SPYUS500.html:48:1 (SPYUS500.Rd:11): Warning: missing </ul> before </div>
cancer.html:48:1 (cancer.Rd:11): Warning: missing </ul> before </div>
rates.html:48:1 (rates.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Shaun Turney <shaun.turney@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shaun",
                      family = "Turney",
                      role = c("aut", "cre"),
                      email = "shaun.turney@mail.mcgill.ca"),
               person(given = "Michael",
                      family = "Bachhofer",
                      role = "aut"))
as necessary.
Running examples in ‘FCMapper-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: graph.fcm
> ### Title: Fuzzy cognitive map graph
> ### Aliases: graph.fcm
> 
> ### ** Examples
> 
> 
> matrix = matrix(nrow=7,ncol=7)
> matrix[1,] = c(0,-0.5,0,0,1,0,1)
> matrix[2,] = c(1,0,1,0.2,0,0,0.6)
> matrix[3,] = c(0,1,0,0,0,0,0)
> matrix[4,] = c(0.6,0,0,1,0,0,0.1)
> matrix[5,] = c(0,0.5,0,0,1,0,-0.6) 
> matrix[6,] = c(0,0,-1,0,0,0,0)
> matrix[7,] = c(0,0,0,-0.5,0,0,1)
> concept.names = c("A","B","C","D","E","F","G")
> 
> results = nochanges.scenario(matrix,iter=25,concept.names)
> 
> graph.fcm(matrix,concept.sizes=results$Equilibrium_value,concept.names)
Warning: Non-positive edge weight found, ignoring all weights during graph layout.
Warning in rep(no, length.out = len) :
  'x' is NULL so the result will be NULL
Error in ans[npos] <- rep(no, length.out = len)[npos] : 
  replacement has length zero
Calls: graph.fcm ... .tkplot.update.vertex -> .tkplot.update.edge -> ifelse
Execution halted
Maintainer: ‘Zoumpoulia Dikopoulou <dikopoulia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zoumpoulia", "Dikopoulou"),
                      family = "<zoumpolia.dikopoulou@uhasselt.be>",
                      role = "aut",
                      email = "zoumpolia.dikopoulou@uhasselt.be"),
               person(given = "Elpiniki",
                      family = "Papageorgiou",
                      role = "aut",
                      email = "epapageorgiou@teiste.gr"),
               person(role = "aut",
                      email = "e.i.papageorgiou75@gmail.com"),
               person(given = "Zoumpoulia",
                      family = "Dikopoulou",
                      role = "cre",
                      email = "dikopoulia@gmail.com"))
as necessary.
Maintainer: ‘Paul Smith <paul@waternumbers.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diethelm",
                      family = "Wuertz",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Setz",
                      role = "aut"),
               person(given = "Yohan",
                      family = "Chalabi",
                      role = "ctb"),
               person(given = "Paul",
                      family = "Smith",
                      role = "cre",
                      email = "paul@waternumbers.co.uk"))
as necessary.
Maintainer: ‘Doulaye Dembele <doulaye@igbmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Doulaye",
                    family = "Dembele",
                    role = c("aut", "cre"),
                    email = "doulaye@igbmc.fr")
as necessary.
Found the following files/directories:
  ‘test2delete.txt’ ‘test2delete2_values.txt’ ‘test2delete_values.txt’
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Found the following files/directories:
  ‘.Rprofile’
Maintainer: ‘Lealand Morin <lealand.morin@ucf.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Guillermo Mestre Marcos <guillermo.mestre@comillas.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘FTS_identification.Rd’:
    https://doi.org/10.1016/j.csda.2020.107108
    https://doi.org/10.1016/j.ijepes.2020.106083
    https://doi.org/10.1016/j.jmva.2017.08.004
  File ‘fit_ARHp_FPCA.Rd’:
    https://doi.org/10.1080/01621459.2014.909317
  File ‘obtain_FACF.Rd’:
    https://doi.org/10.1016/j.csda.2020.107108
    https://doi.org/10.1016/j.ijepes.2020.106083
    https://doi.org/10.1016/j.jmva.2017.08.004
  File ‘obtain_FPACF.Rd’:
    https://doi.org/10.1016/j.csda.2020.107108
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘caps-plot.R’ ‘utils.R’
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tomasz",
                      family = "Gorecki",
                      role = "aut"),
               person(given = "Lukasz",
                      family = "Smaga",
                      role = c("aut", "cre"),
                      email = "ls@amu.edu.pl"))
as necessary.
checkRd: (-1) simulation_model9.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{ci}{A vector of 2 values containing $c_{1i}$ and $c_{2i}$ in the contamination
       |                                              ^
checkRd: (-1) simulation_model9.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{ci}{A vector of 2 values containing $c_{1i}$ and $c_{2i}$ in the contamination
       |                                                           ^
Found the following HTML validation problems:
plot_dtt.html:100:1 (plot_dtt.Rd:45): Warning: missing </ul> before </div>
Found the following HTML validation problems:
CheckData.html:50:1 (CheckData.Rd:12): Warning: missing </ul> before </div>
CheckOptions.html:54:1 (CheckOptions.Rd:14): Warning: missing </ul> before </div>
ConvertSupport.html:74:1 (ConvertSupport.Rd:27): Warning: missing </ul> before </div>
SetOptions.html:56:1 (SetOptions.Rd:16): Warning: missing </ul> before </div>
cumtrapzRcpp.html:50:1 (cumtrapzRcpp.Rd:12): Warning: missing </ul> before </div>
print.FSVD.html:51:1 (print.FSVD.Rd:12): Warning: missing </ul> before </div>
print.WFDA.html:51:1 (print.WFDA.Rd:12): Warning: missing </ul> before </div>
str.FPCA.html:51:1 (str.FPCA.Rd:12): Warning: missing </ul> before </div>
trapzRcpp.html:50:1 (trapzRcpp.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
run_app.html:46:1 (run_app.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
beta.html:49:1 (beta.Rd:13): Warning: missing </ul> before </div>
f_plot.html:52:1 (f_plot.Rd:14): Warning: missing </ul> before </div>
growth_vel.html:58:1 (growth_vel.Rd:17): Warning: missing </ul> before </div>
im.html:56:1 (im.Rd:15): Warning: missing </ul> before </div>
simu_data.html:66:1 (simu_data.Rd:17): Warning: missing </ul> before </div>
simu_warp.html:56:1 (simu_warp.Rd:12): Warning: missing </ul> before </div>
simu_warp_median.html:56:1 (simu_warp_median.Rd:12): Warning: missing </ul> before </div>
toy_data.html:61:1 (toy_data.Rd:17): Warning: missing </ul> before </div>
toy_warp.html:51:1 (toy_warp.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Alessia Pini <alessia.pini@polimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessia",
                      family = "Pini",
                      role = c("aut", "cre"),
                      email = "alessia.pini@polimi.it"),
               person(given = "Simone",
                      family = "Vantini",
                      role = "aut"))
as necessary.
checkRd: (-1) NASAtemp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NASAtemp.Rd:15: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
getTaxonomy.html:47:1 (getTaxonomy.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Etienne Laliberté <etiennelaliberte@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Etienne",
                      family = "Laliberté",
                      role = c("aut", "cre"),
                      email = "etiennelaliberte@gmail.com"),
               person(given = "Pierre",
                      family = "Legendre",
                      role = "aut"),
               person(given = "Bill",
                      family = "Shipley",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘vert.txt’
Maintainer: ‘Joshua Millstein <joshua.millstein@usc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiongzhi Chen <xiongzhi.chen@wsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiongzhi",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "xiongzhi.chen@wsu.edu"),
               person(given = c("Rebecca", "W."),
                      family = "Doerge",
                      role = "aut",
                      email = "rwdoerge@andrew.cmu.edu"))
as necessary.
checkRd: (-1) p.fdr.Rd:30: Lost braces
    30 | \item{adjust.method}{A string used to identify the p-value and false discovery rate adjustment method. Defaults to \code{BH}. Options are \code{BH}, \code{BY}, code{Bon},\code{Holm}, \code{Hoch}, and \code{Sidak}.}
       |                                                                                                                                                                     ^
Maintainer: ‘Stan Pounds <stanley.pounds@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stan",
                    family = "Pounds",
                    role = c("aut", "cre"),
                    email = "stanley.pounds@stjude.org")
as necessary.
Maintainer: ‘Han Lin Shang <hanlin.shang@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Han", "Lin"),
                      family = "Shang",
                      role = c("aut", "cre"),
                      email = "hanlin.shang@anu.edu.au"),
               person(given = c("Rob", "J"),
                      family = "Hyndman",
                      role = "aut"))
as necessary.
Maintainer: ‘Valentina Masarotto <v.masarotto@math.leidenuniv.nl>’

The Description field contains
  in Masarotto, Panaretos & Zemel (2022) <arXiv:2212.04797>.  - perform a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Habil Zare <zare@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Habil",
                    family = "Zare",
                    role = c("aut", "cre"),
                    email = "zare@u.washington.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Henna D. Bhramdat <bhramdath@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Henna", "D."),
                    family = "Bhramdat",
                    role = c("aut", "cre"),
                    email = "bhramdath@ufl.edu")
as necessary.
Specified C++11: please drop specification unless essential
File ‘feather/libs/feather.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Object: ‘libfeather.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following HTML validation problems:
feather_example.html:50:1 (feather_example.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) mutlicol_terminator.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mutlicol_terminator.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mutlicol_terminator.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mutlicol_terminator.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Ali Uenlue <ali.uenlue@tum.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) morse.Rd:40: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) regMin.Rd:24: Escaped LaTeX specials: \#
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "J."),
                    family = "Leeper",
                    role = c("aut", "cre"),
                    email = "thosjleeper@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add.R’ ‘comments.R’ ‘create.R’ ‘delete.R’ ‘finish_upload.R’ ‘map.R’
    ‘map_elements.R’ ‘proc.R’ ‘style.R’ ‘user.R’
Maintainer: ‘Thuan Nguyen <nguythua@ohsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiming",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Jianyang",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("J.", "Sunil"),
                      family = "Rao",
                      role = "aut"),
               person(given = "Thuan",
                      family = "Nguyen",
                      role = c("aut", "cre"),
                      email = "nguythua@ohsu.edu"))
as necessary.
Found the following HTML validation problems:
plot.AF.html:51:1 (plot.AF.Rd:12): Warning: missing </ul> before </div>
plot.NF.html:51:1 (plot.NF.Rd:12): Warning: missing </ul> before </div>
summary.AF.html:51:1 (summary.AF.Rd:12): Warning: missing </ul> before </div>
summary.NF.html:51:1 (summary.NF.Rd:12): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:754:1 (inst/NEWS.Rd:339): Warning: missing </ul> before </div>
NEWS.html:142:1 (inst/NEWS.Rd:65): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:197:1 (inst/NEWS.Rd:90): Warning: <h4> anchor "Bug-fixes" already defined
NEWS.html:240:1 (inst/NEWS.Rd:112): Warning: <h4> anchor "Improvements" already defined
NEWS.html:283:1 (inst/NEWS.Rd:131): Warning: <h4> anchor "Vignette" already defined
NEWS.html:309:1 (inst/NEWS.Rd:144): Warning: <h4> anchor "New-arguments" already defined
NEWS.html:320:1 (inst/NEWS.Rd:149): Warning: <h4> anchor "Improvements" already defined
NEWS.html:343:1 (inst/NEWS.Rd:158): Warning: <h4> anchor "Other" already defined
NEWS.html:386:1 (inst/NEWS.Rd:178): Warning: <h4> anchor "Vignette" already defined
NEWS.html:404:1 (inst/NEWS.Rd:187): Warning: <h4> anchor "New-features" already defined
NEWS.html:427:1 (inst/NEWS.Rd:196): Warning: <h4> anchor "Improvements" already defined
NEWS.html:519:1 (inst/NEWS.Rd:236): Warning: <h4> anchor "Improvements" already defined
NEWS.html:533:1 (inst/NEWS.Rd:242): Warning: <h4> anchor "Documentation" already defined
NEWS.html:548:1 (inst/NEWS.Rd:250): Warning: <h4> anchor "New-features" already defined
NEWS.html:565:1 (inst/NEWS.Rd:257): Warning: <h4> anchor "Documentation" already defined
NEWS.html:582:1 (inst/NEWS.Rd:264): Warning: <h4> anchor "Bug" already defined
NEWS.html:596:1 (inst/NEWS.Rd:270): Warning: <h4> anchor "Miscellaneous" already defined
NEWS.html:637:1 (inst/NEWS.Rd:289): Warning: <h4> anchor "Other" already defined
NEWS.html:686:1 (inst/NEWS.Rd:313): Warning: <h4> anchor "New-Features" already defined
NEWS.html:740:1 (inst/NEWS.Rd:335): Warning: <h4> anchor "Bug-Fixes" already defined
Maintainer: ‘Pablo Saz Parkinson <sazpark2@gmail.com>’

The Description field contains
  Support Center (http://fermi.gsfc.nasa.gov/ssc/).
Please enclose URLs in angle brackets (<...>).
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc-squintability.R’ ‘get.R’ ‘pipe-sine-boa.Rd’ ‘plot-projection.R’
    ‘projection.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘change_column_types.Rd’ ‘create_alter_attr.Rd’ ‘create_edgelist.Rd’
    ‘create_nw.Rd’ ‘create_relation_labels.Rd’ ‘create_tidygraph.Rd’
    ‘fix_errors.Rd’ ‘produce_data.R’ ‘translate.Rd’
Found the following HTML validation problems:
param-alpha.html:41:1 (param-alpha.Rd:8): Warning: missing </ul> before </div>
param-data.html:41:1 (param-data.Rd:8): Warning: missing </ul> before </div>
param-distribution.html:42:1 (param-distribution.Rd:9): Warning: missing </ul> before </div>
param-generate-report.html:40:1 (param-generate-report.Rd:7): Warning: missing </ul> before </div>
param-method.html:41:1 (param-method.Rd:8): Warning: missing </ul> before </div>
param-ns-slice.html:42:1 (param-ns-slice.Rd:9): Warning: missing </ul> before </div>
param-ns-slices.html:42:1 (param-ns-slices.Rd:9): Warning: missing </ul> before </div>
param-ns-splits.html:44:1 (param-ns-splits.Rd:11): Warning: missing </ul> before </div>
param-ns-structure.html:50:1 (param-ns-structure.Rd:12): Warning: missing </ul> before </div>
param-ns-structures.html:44:1 (param-ns-structures.Rd:11): Warning: missing </ul> before </div>
param-ns-years.html:41:1 (param-ns-years.Rd:8): Warning: missing </ul> before </div>
param-p.html:40:1 (param-p.Rd:7): Warning: missing </ul> before </div>
param-params.html:42:1 (param-params.Rd:9): Warning: missing </ul> before </div>
param-periods.html:41:1 (param-periods.Rd:8): Warning: missing </ul> before </div>
param-prior.html:41:1 (param-prior.Rd:8): Warning: missing </ul> before </div>
param-q.html:40:1 (param-q.Rd:7): Warning: missing </ul> before </div>
param-report-formats.html:41:1 (param-report-formats.Rd:8): Warning: missing </ul> before </div>
param-report-path.html:41:1 (param-report-path.Rd:8): Warning: missing </ul> before </div>
param-samples.html:40:1 (param-samples.Rd:7): Warning: missing </ul> before </div>
param-tolerance.html:41:1 (param-tolerance.Rd:8): Warning: missing </ul> before </div>
param-years.html:41:1 (param-years.Rd:8): Warning: missing </ul> before </div>
Maintainer: ‘Ian Kopacka <ian.kopacka@ages.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ian",
                    family = "Kopacka",
                    role = c("aut", "cre"),
                    email = "ian.kopacka@ages.at")
as necessary.
Unexported object imported by a ':::' call: ‘bit:::R_bit_as_hi’
  See the note in ?`:::` about the use of this operator.
Found the following HTML validation problems:
Forbidden_ffdf.html:59:1 (Forbidden_ffdf.rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-add_allplay.html:50:1 (dot-add_allplay.Rd:12): Warning: missing </ul> before </div>
dot-fn_set_ratelimit.html:55:1 (dot-fn_set_ratelimit.Rd:14): Warning: missing </ul> before </div>
dot-retry_get.html:46:1 (dot-retry_get.Rd:10): Warning: missing </ul> before </div>
dot-retry_post.html:46:1 (dot-retry_post.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_cplx.Rd’ ‘add_l2nm.Rd’ ‘can_repr.Rd’ ‘cross.R’ ‘fft.R’
    ‘fftab.Rd’ ‘fourier_frequencies.Rd’ ‘frequency.R’ ‘get.R’ ‘get_fx.Rd’
    ‘get_rect.Rd’ ‘has_cplx.Rd’ ‘internal.R’ ‘plot.R’ ‘repr.R’
    ‘to_cplx.Rd’
Found the following HTML validation problems:
dot-shift_phase.html:50:1 (dot-shift_phase.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fact_clean.html:54:1 (fact_clean.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Karim Rahim <karim.rahim@queensu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karim",
                    family = "Rahim",
                    role = c("aut", "cre"),
                    email = "karim.rahim@queensu.ca")
as necessary.
Maintainer: ‘Dariush Najarzadeh <D_Najarzadeh@sbu.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dariush",
                    family = "Najarzadeh",
                    role = c("aut", "cre"),
                    email = "d_najarzadeh@sbu.ac.ir")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:440:1 (inst/NEWS.Rd:331): Warning: missing </ul> before </div>
NEWS.html:223:1 (inst/NEWS.Rd:182): Warning: <h4> anchor "NEW-MAINTAINER" already defined
NEWS.html:250:1 (inst/NEWS.Rd:198): Warning: <h4> anchor "NEW-MAINTAINER" already defined
NEWS.html:283:1 (inst/NEWS.Rd:217): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:329:1 (inst/NEWS.Rd:248): Warning: <h4> anchor "Misc" already defined
NEWS.html:349:1 (inst/NEWS.Rd:275): Warning: <h4> anchor "Misc" already defined
NEWS.html:374:1 (inst/NEWS.Rd:294): Warning: <h4> anchor "Misc" already defined
NEWS.html:395:1 (inst/NEWS.Rd:304): Warning: <h4> anchor "Misc" already defined
Found the following HTML validation problems:
headers.html:40:1 (headers.Rd:7): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fgit_clone_from_url.html:58:1 (fgit_clone_from_url.Rd:16): Warning: missing </ul> before </div>
func_mk_dir.html:54:1 (func_mk_dir.Rd:14): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FGLMtrunc.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Clayton", "Vieira", "Fraga"),
                      family = "Filho",
                      role = c("aut", "cre"),
                      email = "forestgrowthsoftware@gmail.com"),
               person(given = c("Ana", "Paula"),
                      family = "Simiqueli",
                      role = "aut"),
               person(given = c("Gilson", "Fernandes", "da"),
                      family = "Silva",
                      role = "aut"),
               person(given = "Miqueias",
                      family = "Fernandes",
                      role = "aut"),
               person(given = c("Wagner", "Amorim", "da", "Silva"),
                      family = "Altoe",
                      role = "aut"))
as necessary.
checkRd: (-1) contemParametros.Rd:19: Lost braces
    19 | \item{exclui3pontos}{verify por ... ? in f<-function(a, ...){ }}
       |                                                             ^
Found the following HTML validation problems:
avaliaAjuste.html:84:1 (avaliaAjuste.Rd:30): Warning: missing </ul> before </div>
defineClasses.html:67:1 (defineClasses.Rd:21): Warning: missing </ul> before </div>
getGraphicHistogram.html:67:1 (getGraphicHistogram.Rd:21): Warning: missing </ul> before </div>
getGraphicObservadoXEstimado.html:85:1 (getGraphicObservadoXEstimado.Rd:31): Warning: missing </ul> before </div>
getGraphicResiduoAbs.html:81:1 (getGraphicResiduoAbs.Rd:29): Warning: missing </ul> before </div>
getGraphicResiduoPerc.html:81:1 (getGraphicResiduoPerc.Rd:29): Warning: missing </ul> before </div>
rrmse.html:50:1 (rrmse.Rd:12): Warning: missing </ul> before </div>
salvaModelo.html:50:1 (salvaModelo.Rd:12): Warning: missing </ul> before </div>
separaDados.html:58:1 (separaDados.Rd:16): Warning: missing </ul> before </div>
syx.html:58:1 (syx.Rd:16): Warning: missing </ul> before </div>
syxPerc.html:50:1 (syxPerc.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffmann",
                    role = c("aut", "cre"),
                    email = "tjhoffm@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
fhir_authenticate.html:84:1 (fhir_authenticate.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Ramon Oller <ramon.oller@uvic.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Oller",
                      role = c("aut", "cre"),
                      email = "ramon.oller@uvic.cat"),
               person(given = "Klaus",
                      family = "Langohr",
                      role = "aut"))
as necessary.
Maintainer: ‘Natalya Pya Arnqvist <nat.pya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalya", "Pya"),
                      family = "Arnqvist",
                      role = c("aut", "cre"),
                      email = "nat.pya@gmail.com"),
               person(given = c("Sara", "Sjöstedt"),
                      family = "de Luna",
                      role = "aut"),
               person(given = "Konrad",
                      family = "Abramowicz",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
flame.html:59:1 (flame.Rd:47): Warning: missing </ul> before </div>
minitri.html:68:1 (minitri.Rd:53): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dfs_equal.html:54:1 (dfs_equal.Rd:12): Warning: missing </ul> before </div>
get_file_info.html:46:1 (get_file_info.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Found the following HTML validation problems:
coerceDB1RDS.html:40:1 (coerceDB1RDS.Rd:8): Warning: missing </ul> before </div>
coerceDB1list.html:40:1 (coerceDB1list.Rd:8): Warning: missing </ul> before </div>
coercelist.html:40:1 (coercelist.Rd:8): Warning: missing </ul> before </div>
registerFormatDB.html:50:1 (registerFormatDB.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Maintainer: ‘Kridsadakorn Chaichoompu <kridsadakorn@biostatgen.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
fill_missing.html:58:1 (fill_missing.Rd:16): Warning: missing </ul> before </div>
fill_vector_interval.html:46:1 (fill_vector_interval.Rd:10): Warning: missing </ul> before </div>
fill_vector_last.html:50:1 (fill_vector_last.Rd:12): Warning: missing </ul> before </div>
fill_vector_max.html:50:1 (fill_vector_max.Rd:12): Warning: missing </ul> before </div>
fill_vector_min.html:50:1 (fill_vector_min.Rd:12): Warning: missing </ul> before </div>
fill_vector_previous.html:46:1 (fill_vector_previous.Rd:10): Warning: missing </ul> before </div>
fill_vector_strict.html:50:1 (fill_vector_strict.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
catTestfisher.html:46:1 (catTestfisher.Rd:10): Warning: missing </ul> before </div>
condense_fit.html:83:1 (condense_fit.Rd:34): Warning: missing </ul> before </div>
extract_fit.html:176:1 (extract_fit.Rd:120): Warning: missing </ul> before </div>
ff_eval.html:47:1 (ff_eval.Rd:10): Warning: missing </ul> before </div>
format_n_percent.html:62:1 (format_n_percent.Rd:18): Warning: missing </ul> before </div>
plot_title.html:60:1 (plot_title.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-final_size.html:48:1 (dot-final_size.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Xuanhua(Peter) Yin <peteryin.sju@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuanhua",
                      family = "Yin",
                      role = "aut",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"),
               person(given = "Xuanhua",
                      family = "Yin",
                      role = "cre",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"))
as necessary.
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
Found the following HTML validation problems:
plot.CovCv.html:51:1 (plot.CovCv.Rd:12): Warning: missing </ul> before </div>
print.CovCv.html:51:1 (print.CovCv.Rd:12): Warning: missing </ul> before </div>
summary.CovCv.html:51:1 (summary.CovCv.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.CausalANOVA.html:79:1 (plot.CausalANOVA.Rd:30): Warning: missing </ul> before </div>
summary.CausalANOVA.html:63:1 (summary.CausalANOVA.Rd:18): Warning: missing </ul> before </div>
summary.FindIt.html:51:1 (summary.FindIt.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Thibault Sellam <thibault.sellam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thibault",
                    family = "Sellam",
                    role = c("aut", "cre"),
                    email = "thibault.sellam@gmail.com")
as necessary.
Maintainer: ‘Reiichiro Nakamichi <nakamichi@affrc.go.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Reiichiro",
                      family = "Nakamichi",
                      role = c("aut", "cre"),
                      email = "nakamichi@affrc.go.jp"),
               person(given = "Shuichi",
                      family = "Kitada",
                      role = "aut"),
               person(given = "Hirohisa",
                      family = "Kishino",
                      role = "aut"))
as necessary.
Maintainer: ‘Reiichiro Nakamichi <nakamichi_reiichiro33@fra.go.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Reiichiro",
                      family = "Nakamichi",
                      role = c("aut", "cre"),
                      email = "nakamichi_reiichiro33@fra.go.jp"),
               person(given = "Hirohisa",
                      family = "Kishino",
                      role = "aut"),
               person(given = "Shuichi",
                      family = "Kitada",
                      role = "aut"))
as necessary.
Maintainer: ‘Rajarshi Guha <rajarshi.guha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rajarshi",
                    family = "Guha",
                    role = c("aut", "cre"),
                    email = "rajarshi.guha@gmail.com")
as necessary.
checkRd: (-1) bitspec.Rd:8: Escaped LaTeX specials: \&
Found the following HTML validation problems:
LDA_plot.html:62:1 (LDA_plot.Rd:18): Warning: missing </ul> before </div>
PCA_plot.html:54:1 (PCA_plot.Rd:14): Warning: missing </ul> before </div>
correlation_plot.html:68:1 (correlation_plot.Rd:24): Warning: missing </ul> before </div>
inputMixture.html:46:1 (inputMixture.Rd:10): Warning: missing </ul> before </div>
inputSource.html:50:1 (inputSource.Rd:12): Warning: missing </ul> before </div>
plot_results.html:78:1 (plot_results.Rd:30): Warning: missing </ul> before </div>
write_results.html:46:1 (write_results.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
finna_as_json.html:49:1 (finna_as_json.Rd:13): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘00.helpers.R’ ‘01.firm_register.R’ ‘02.FOandFM.R’ ‘03.people.R’
    ‘04.FF_either.R’ ‘05.network&graph.R’
Found the following HTML validation problems:
cubist_multistep_fit_impl.html:88:1 (cubist_multistep_fit_impl.Rd:36): Warning: missing </ul> before </div>
glmnet_multistep_fit_impl.html:83:1 (glmnet_multistep_fit_impl.Rd:33): Warning: missing </ul> before </div>
mars_multistep_fit_impl.html:89:1 (mars_multistep_fit_impl.Rd:37): Warning: missing </ul> before </div>
svm_poly_multistep_fit_impl.html:96:1 (svm_poly_multistep_fit_impl.Rd:42): Warning: missing </ul> before </div>
svm_rbf_multistep_fit_impl.html:90:1 (svm_rbf_multistep_fit_impl.Rd:38): Warning: missing </ul> before </div>
xgboost_multistep_fit_impl.html:138:1 (xgboost_multistep_fit_impl.Rd:70): Warning: missing </ul> before </div>
Maintainer: ‘Jan Greve <jan.greve@wu.ac.at>’

The Description field contains
  (2020) <arXiv:2005.09918>). For methodological details, please refer to
  <arXiv:2012.12337>) as well as the package vignette.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fipp.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
CORS.html:234:1 (CORS.Rd:163): Warning: <h5> anchor "Usage" already defined
CORS.html:248:1 (CORS.Rd:175): Warning: <h5> anchor "Arguments" already defined
CORS.html:319:1 (CORS.Rd:227): Warning: <h5> anchor "Usage" already defined
CORS.html:325:1 (CORS.Rd:231): Warning: <h5> anchor "Arguments" already defined
CORS.html:350:1 (CORS.Rd:246): Warning: <h5> anchor "Usage" already defined
CORS.html:356:1 (CORS.Rd:250): Warning: <h5> anchor "Arguments" already defined
ResourceIsolation.html:199:1 (ResourceIsolation.Rd:138): Warning: <h5> anchor "Usage" already defined
ResourceIsolation.html:210:1 (ResourceIsolation.Rd:147): Warning: <h5> anchor "Arguments" already defined
ResourceIsolation.html:245:1 (ResourceIsolation.Rd:172): Warning: <h5> anchor "Usage" already defined
ResourceIsolation.html:251:1 (ResourceIsolation.Rd:176): Warning: <h5> anchor "Arguments" already defined
ResourceIsolation.html:276:1 (ResourceIsolation.Rd:191): Warning: <h5> anchor "Usage" already defined
ResourceIsolation.html:282:1 (ResourceIsolation.Rd:195): Warning: <h5> anchor "Arguments" already defined
SecurityHeaders.html:441:1 (SecurityHeaders.Rd:367): Warning: <h5> anchor "Usage" already defined
SecurityHeaders.html:447:1 (SecurityHeaders.Rd:371): Warning: <h5> anchor "Arguments" already defined
SecurityHeaders.html:472:1 (SecurityHeaders.Rd:386): Warning: <h5> anchor "Usage" already defined
SecurityHeaders.html:478:1 (SecurityHeaders.Rd:390): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
FireSale.html:163:1 (FireSale.Rd:104): Warning: <h5> anchor "Usage" already defined
FireSale.html:169:1 (FireSale.Rd:108): Warning: <h5> anchor "Arguments" already defined
FireSale.html:193:1 (FireSale.Rd:122): Warning: <h5> anchor "Usage" already defined
FireSale.html:199:1 (FireSale.Rd:126): Warning: <h5> anchor "Arguments" already defined
FireSale.html:225:1 (FireSale.Rd:142): Warning: <h5> anchor "Usage" already defined
FireSale.html:231:1 (FireSale.Rd:146): Warning: <h5> anchor "Arguments" already defined
FireSale.html:260:1 (FireSale.Rd:165): Warning: <h5> anchor "Usage" already defined
FireSale.html:266:1 (FireSale.Rd:169): Warning: <h5> anchor "Arguments" already defined
FireSale.html:291:1 (FireSale.Rd:184): Warning: <h5> anchor "Usage" already defined
FireSale.html:297:1 (FireSale.Rd:188): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
ReverseProxy.html:137:1 (ReverseProxy.Rd:99): Warning: <h5> anchor "Usage" already defined
ReverseProxy.html:143:1 (ReverseProxy.Rd:103): Warning: <h5> anchor "Arguments" already defined
ReverseProxy.html:168:1 (ReverseProxy.Rd:118): Warning: <h5> anchor "Usage" already defined
ReverseProxy.html:174:1 (ReverseProxy.Rd:122): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
alba_boot.html:58:1 (alba_boot.Rd:17): Warning: missing </ul> before </div>
bonito_boot.html:63:1 (bonito_boot.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = c("aut", "cre"),
                      email = "charles.bouveyron@gmail.com"),
               person(given = c("Camille", "Brunet", "&", "Nicolas"),
                      family = "Jouvin.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) FiSh-package.Rd:19: Lost braces
    19 | \doi{10.3389/feart.2020.00255}{Frontiers in Earth Science, 8:255}.
       |                               ^
checkRd: (-1) FiSh-package.Rd:32: Lost braces
    32 | \doi{10.3389/feart.2020.00255}{Frontiers in Earth Science, 8:255}.
       |                               ^
checkRd: (-1) SEP_FIM.Rd:46: Lost braces
    46 | \doi{10.3389/feart.2020.00255}{Frontiers in Earth Science, 8:255}.
       |                               ^
Maintainer: ‘Cory Nissen <corynissen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cory",
                    family = "Nissen",
                    role = c("aut", "cre"),
                    email = "corynissen@gmail.com")
as necessary.
checkRd: (-1) fitConic.Rd:66-73: Lost braces
    66 | \code{parA }{vector of the six "ABCDEF" coefficients
       |             ^
checkRd: (-1) fitConic.Rd:67: Lost braces
    67 | \code{RSS }{'root sum square' figure of merit describing the relative fit quality}
       |            ^
checkRd: (-1) fitConic.Rd:68: Lost braces
    68 | \code{iters }{number of iterations at convergence}
       |              ^
checkRd: (-1) fitConic.Rd:69-71: Lost braces
    69 | \code{exitCode }{1 means ellipse, 2 means hyperbola, 3 means parabola.
       |                 ^
checkRd: (-1) rotateA.Rd:59: Lost braces; missing escapes or markup?
    59 | For \code{xyrot} {a Nx2 array of the x,y coordinates of the rotated data set. }
       |                  ^
checkRd: (-1) fitmixEM.Rd:51: Escaped LaTeX specials: \&
Found the following HTML validation problems:
center.html:53:1 (center.Rd:14): Warning: missing </ul> before </div>
summary.covfm.html:57:1 (summary.covfm.Rd:16): Warning: missing </ul> before </div>
vcor.html:56:1 (vcor.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fitode-class.Rd: mle2-class
  fitode.Rd: ode, ginv, mle2
  fitodeMCMC.Rd: ode
  logLik.sensitivity.Rd: ode
  ode.sensitivity.Rd: ode
  summary-fitodeMCMC-method.Rd: effectiveSize, gelman.diag
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
check_link.html:51:1 (check_link.Rd:12): Warning: missing </ul> before </div>
fixpar.html:51:1 (fixpar.Rd:12): Warning: missing </ul> before </div>
grad-odemodel-method.html:55:1 (grad-odemodel-method.Rd:15): Warning: missing </ul> before </div>
jacobian-odemodel-method.html:59:1 (jacobian-odemodel-method.Rd:17): Warning: missing </ul> before </div>
make_prior.html:62:1 (make_prior.Rd:18): Warning: missing </ul> before </div>
ode.sensitivity.html:69:1 (ode.sensitivity.Rd:24): Warning: missing </ul> before </div>
plot_internal.html:108:1 (plot_internal.Rd:48): Warning: missing </ul> before </div>
select_model.html:49:1 (select_model.Rd:13): Warning: missing </ul> before </div>
select_prior.html:63:1 (select_prior.Rd:21): Warning: missing </ul> before </div>
simulate_internal.html:88:1 (simulate_internal.Rd:36): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.plcfit.html:177:1 (plot.plcfit.Rd:82): Warning: missing </ul> before </div>
Found the following HTML validation problems:
writeDatfile.html:92:1 (writeDatfile.Rd:39): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘readData.R’
Found the following HTML validation problems:
rzeta.html:55:1 (rzeta.Rd:14): Warning: missing </ul> before </div>
var.html:50:1 (var.Rd:12): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Maintainer: ‘Andrew Harris <harris@astro.umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "harris@astro.umd.edu")
as necessary.
Maintainer: ‘Markus Boenn <markus.boenn.sf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Boenn",
                    role = c("aut", "cre"),
                    email = "markus.boenn.sf@gmail.com")
as necessary.
Maintainer: ‘José Carlos Del Valle <jcval94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("José", "Carlos", "Del"),
                    family = "Valle",
                    role = c("aut", "cre"),
                    email = "jcval94@gmail.com")
as necessary.
Found the following HTML validation problems:
parse_team_abbr.html:48:1 (parse_team_abbr.Rd:11): Warning: missing </ul> before </div>
replace_teams.html:48:1 (replace_teams.Rd:11): Warning: missing </ul> before </div>
replace_venues.html:50:1 (replace_venues.Rd:12): Warning: missing </ul> before </div>
team_abr_afl.html:46:1 (team_abr_afl.Rd:10): Warning: missing </ul> before </div>
team_abr_afl2.html:50:1 (team_abr_afl2.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Albert Y. Kim <albert.ys.kim@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) food_world_cup.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:75: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fpAnova.Rd: anovaBF
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Stuart Baumann <Stuart@StuartBaumann.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Stuart", "Baumann", "&", "Margaryta"),
                      family = "Klymak",
                      role = "aut"),
               person(given = "Stuart",
                      family = "Baumann",
                      role = "cre",
                      email = "Stuart@StuartBaumann.com"))
as necessary.
Maintainer: ‘Evan Odell <evanodell91@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Found the following HTML validation problems:
fixer_api_key.html:53:1 (fixer_api_key.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Wenge",
                      family = "Guo",
                      role = "aut"))
as necessary.
checkRd: (-1) distribution_vector.Rd:14: Lost braces; missing escapes or markup?
    14 | All standard distributions from {stats} package are covered. For a list
       |                                 ^
Found the following HTML validation problems:
MockDataGenerator.html:202:1 (MockDataGenerator.Rd:105): Warning: missing </ul> before </div>
MockDataGenerator.html:101:1 (MockDataGenerator.Rd:48): Warning: <h5> anchor "Usage" already defined
MockDataGenerator.html:107:1 (MockDataGenerator.Rd:52): Warning: <h5> anchor "Arguments" already defined
MockDataGenerator.html:124:1 (MockDataGenerator.Rd:63): Warning: <h5> anchor "Returns" already defined
MockDataGenerator.html:141:1 (MockDataGenerator.Rd:72): Warning: <h5> anchor "Usage" already defined
MockDataGenerator.html:147:1 (MockDataGenerator.Rd:76): Warning: <h5> anchor "Arguments" already defined
MockDataGenerator.html:162:1 (MockDataGenerator.Rd:85): Warning: <h5> anchor "Returns" already defined
MockDataGenerator.html:179:1 (MockDataGenerator.Rd:94): Warning: <h5> anchor "Usage" already defined
MockDataGenerator.html:185:1 (MockDataGenerator.Rd:98): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘David P. Hofmeyr <dhofmeyr@sun.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "P."),
                    family = "Hofmeyr",
                    role = c("aut", "cre"),
                    email = "dhofmeyr@sun.ac.za")
as necessary.
Found the following HTML validation problems:
plot.fk_ICA.html:51:1 (plot.fk_ICA.Rd:12): Warning: missing </ul> before </div>
plot.fk_density.html:55:1 (plot.fk_density.Rd:13): Warning: missing </ul> before </div>
plot.fk_mdh.html:51:1 (plot.fk_mdh.Rd:12): Warning: missing </ul> before </div>
plot.fk_ppr.html:56:1 (plot.fk_ppr.Rd:14): Warning: missing </ul> before </div>
plot.fk_regression.html:55:1 (plot.fk_regression.Rd:13): Warning: missing </ul> before </div>
print.fk_ICA.html:51:1 (print.fk_ICA.Rd:12): Warning: missing </ul> before </div>
print.fk_density.html:51:1 (print.fk_density.Rd:12): Warning: missing </ul> before </div>
print.fk_mdh.html:51:1 (print.fk_mdh.Rd:12): Warning: missing </ul> before </div>
print.fk_ppr.html:51:1 (print.fk_ppr.Rd:12): Warning: missing </ul> before </div>
print.fk_regression.html:51:1 (print.fk_regression.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Pascal Kerschke <kerschke@uni-muenster.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘features.Rd’:
    http://dx.doi.org/10.1007/978-3-319-07494-8_9
    http://dx.doi.org/10.1145/2739480.2754642
    http://dx.doi.org/10.1145/1143997.1144085
    http://dx.doi.org/10.1145/2001576.2001690
    http://dx.doi.org/10.1109/TEVC.2014.2302006
  File ‘plotCellMapping.Rd’:
    http://dx.doi.org/10.1007/978-3-319-07494-8_9
  File ‘plotInformationContent.Rd’:
    http://dx.doi.org/10.1109/TEVC.2014.2302006
checkRd: (-1) convertInitDesignToGrid.Rd:11: Lost braces; missing escapes or markup?
    11 | The initial design, consisting of \code{d + 1} columns ({d} dimensions and
       |                                                         ^
Found the following HTML validation problems:
BBOBImport.html:64:1 (BBOBImport.Rd:20): Warning: missing </ul> before </div>
SmoofImport.html:64:1 (SmoofImport.Rd:20): Warning: missing </ul> before </div>
featureObject_sidebar.html:49:1 (featureObject_sidebar.Rd:11): Warning: missing </ul> before </div>
functionInput.html:64:1 (functionInput.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Mátyás Mészáros <matyas.meszaros@ec.europa.eu>’

Found the following (possibly) invalid file URI:
  URI: vignettes/flagr_introduction.pdf
    From: README.md
Maintainer: ‘Florian Lecocq <florian.lecocq@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/flamingos.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) ModelMixHMM-class.Rd:31: Lost braces; missing escapes or markup?
    31 |         \code{smoothed} of class {StatMixHMM}).
       |                                  ^
checkRd: (-1) ModelMixHMMR-class.Rd:31: Lost braces; missing escapes or markup?
    31 |         \code{smoothed} of class {StatMixHMMR}).
       |                                  ^
Maintainer: ‘Ashley Petersen <ashleyjpete@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashley",
                    family = "Petersen",
                    role = c("aut", "cre"),
                    email = "ashleyjpete@gmail.com")
as necessary.
checkRd: (-1) summary.flamcv.rd:8: Lost braces
     8 | This function summarizes a call to code{\link{flamCV}} and identifies the tuning parameter chosen by cross-validation.
       |                                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘projection.R’
Found the following HTML validation problems:
flashCard-shiny.html:70:1 (flashCard-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("code", "by", "Fionn"),
                      family = "Murtagh",
                      role = "aut"),
               person(given = c("R", "development"),
                      family = "team",
                      role = "aut"),
               person(family = "modifications",
                      role = "aut"),
               person(given = c("packaging", "by", "Peter"),
                      family = "Langfelder",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = "cre",
                      email = "Peter.Langfelder@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) flashClust.Rd:92: Escaped LaTeX specials: \&
Found the following HTML validation problems:
check_character.html:58:1 (check_character.Rd:16): Warning: missing </ul> before </div>
check_logical.html:50:1 (check_logical.Rd:12): Warning: missing </ul> before </div>
fail_gracefully.html:55:1 (fail_gracefully.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Scott D. Graham <scott.grah95@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Scott", "D."),
                    family = "Graham",
                    role = c("aut", "cre"),
                    email = "scott.grah95@gmail.com")
as necessary.
Found the following HTML validation problems:
print.ct_goodness_of_fit.html:51:1 (print.ct_goodness_of_fit.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_labels.Rd’ ‘divide.Rd’ ‘extract_labels.Rd’ ‘fill_labels.Rd’
    ‘fill_values.Rd’ ‘flatten_table_list.Rd’ ‘ft_ex.Rd’ ‘ft_ex_v2.Rd’
    ‘ft_set.Rd’ ‘get_col_values.Rd’ ‘get_page.Rd’ ‘pf_ex_compact.Rd’
    ‘remove_agg.Rd’ ‘remove_bottom.Rd’ ‘remove_cols.Rd’ ‘remove_empty.Rd’
    ‘remove_k.Rd’ ‘remove_left.Rd’ ‘remove_right.Rd’ ‘remove_rows.Rd’
    ‘remove_top.Rd’ ‘replace_dec.Rd’ ‘set_page.Rd’ ‘unpivot.Rd’
Maintainer: ‘Brian D. Williamson <brian.d.williamson@kp.org>’

The Description field contains
  Williamson and Huang (2023+) <arXiv:2202.12989>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Angelo Mazza <a.mazza@unict.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mazza",
                      family = "A.",
                      role = "aut"),
               person(given = "Punzo",
                      family = "A.",
                      role = "aut"),
               person(given = "Ingrassia",
                      family = "S.",
                      role = "aut"),
               person(given = "Angelo",
                      family = "Mazza",
                      role = "cre",
                      email = "a.mazza@unict.it"))
as necessary.
checkRd: (-1) flex_dashboard.Rd:96: Lost braces; missing escapes or markup?
    96 | the `{.storyboard}` attribute to individual pages rather than using the
       |      ^
Found the following HTML validation problems:
gauge-shiny.html:68:1 (gauge-shiny.Rd:25): Warning: missing </ul> before </div>
valueBox-shiny.html:68:1 (valueBox-shiny.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.FDfitted.html:51:1 (print.FDfitted.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
wb_add_caption.html:68:1 (wb_add_caption.Rd:24): Warning: missing </ul> before </div>
wb_apply_border.html:54:1 (wb_apply_border.Rd:14): Warning: missing </ul> before </div>
wb_apply_cell_styles.html:54:1 (wb_apply_cell_styles.Rd:14): Warning: missing </ul> before </div>
wb_apply_content.html:54:1 (wb_apply_content.Rd:14): Warning: missing </ul> before </div>
wb_apply_text_styles.html:54:1 (wb_apply_text_styles.Rd:14): Warning: missing </ul> before </div>
wb_change_cell_width.html:58:1 (wb_change_cell_width.Rd:16): Warning: missing </ul> before </div>
wb_change_row_height.html:54:1 (wb_change_row_height.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) fmp.Rd:45: Lost braces; missing escapes or markup?
    45 | If k = 0: (xi_1, ..., x_{C_i - 1}, omega)
       |                         ^
checkRd: (-1) fmp.Rd:47: Lost braces; missing escapes or markup?
    47 | If k = 1: (xi_1, ..., x_{C_i - 1}, omega, alpha1, tau1)
       |                         ^
checkRd: (-1) fmp.Rd:49: Lost braces; missing escapes or markup?
    49 | If k = 2: (xi_1, ..., x_{C_i - 1}, omega, alpha1, tau1, alpha2, tau2)
       |                         ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AICc.Rd: gam
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
print.flexreg.html:51:1 (print.flexreg.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Zhicheng Du <dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ajfit_flexsurvmix.html:70:1 (ajfit_flexsurvmix.Rd:23): Warning: missing </ul> before </div>
dot-hess_to_cov.html:58:1 (dot-hess_to_cov.Rd:16): Warning: missing </ul> before </div>
dot-hessian.html:70:1 (dot-hessian.Rd:23): Warning: missing </ul> before </div>
get_basepars.html:54:1 (get_basepars.Rd:14): Warning: missing </ul> before </div>
plot_survtrunc.html:54:1 (plot_survtrunc.Rd:15): Warning: missing </ul> before </div>
quantile_flexsurvmix.html:66:1 (quantile_flexsurvmix.Rd:22): Warning: missing </ul> before </div>
summary.flexsurvrtrunc.html:122:1 (summary.flexsurvrtrunc.Rd:64): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_raster.html:46:1 (as_raster.Rd:10): Warning: missing </ul> before </div>
body_replace_flextable_at_bkm.html:70:1 (body_replace_flextable_at_bkm.Rd:25): Warning: missing </ul> before </div>
footers_flextable_at_bkm.html:46:1 (footers_flextable_at_bkm.Rd:10): Warning: missing </ul> before </div>
headers_flextable_at_bkm.html:46:1 (headers_flextable_at_bkm.Rd:10): Warning: missing </ul> before </div>
plot.flextableGrob.html:51:1 (plot.flextableGrob.Rd:12): Warning: missing </ul> before </div>
regulartable.html:57:1 (regulartable.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Léonie Courcoul <leonie.courcoul@u-bordeaux.fr>’

The Description field contains
  Jacqmin-Gadda (2023) <arXiv:2306.16785>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
pred_s.t.bootstrap.tps.html:66:1 (pred_s.t.bootstrap.tps.Rd:20): Warning: missing </ul> before </div>
pred_s.t.ponctuel.tps.html:62:1 (pred_s.t.ponctuel.tps.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
FlickrAPIRequest.html:76:1 (FlickrAPIRequest.Rd:29): Warning: missing </ul> before </div>
setFlickrAPIKey.html:63:1 (setFlickrAPIKey.Rd:24): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:765:1 (inst/NEWS.Rd:513): Warning: missing </ul> before </div>
NEWS.html:170:1 (inst/NEWS.Rd:95): Warning: <h4> anchor "Description" already defined
NEWS.html:243:1 (inst/NEWS.Rd:145): Warning: <h4> anchor "Methods" already defined
NEWS.html:284:1 (inst/NEWS.Rd:176): Warning: <h4> anchor "New-Features" already defined
NEWS.html:338:1 (inst/NEWS.Rd:218): Warning: <h4> anchor "Bug-Fixes" already defined
NEWS.html:378:1 (inst/NEWS.Rd:241): Warning: <h4> anchor "Documentation" already defined
NEWS.html:391:1 (inst/NEWS.Rd:248): Warning: <h4> anchor "New-Features" already defined
NEWS.html:414:1 (inst/NEWS.Rd:264): Warning: <h4> anchor "Internals" already defined
NEWS.html:430:1 (inst/NEWS.Rd:272): Warning: <h4> anchor "Installation" already defined
NEWS.html:471:1 (inst/NEWS.Rd:300): Warning: <h4> anchor "Installation" already defined
NEWS.html:505:1 (inst/NEWS.Rd:323): Warning: <h4> anchor "Description" already defined
NEWS.html:541:1 (inst/NEWS.Rd:348): Warning: <h4> anchor "Installation" already defined
NEWS.html:569:1 (inst/NEWS.Rd:369): Warning: <h4> anchor "Documentation" already defined
NEWS.html:586:1 (inst/NEWS.Rd:380): Warning: <h4> anchor "Classes" already defined
NEWS.html:652:1 (inst/NEWS.Rd:426): Warning: <h4> anchor "Methods" already defined
NEWS.html:686:1 (inst/NEWS.Rd:453): Warning: <h4> anchor "New-Features" already defined
Found the following HTML validation problems:
flipscores-method.html:60:1 (flipscores-method.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
names.html:72:1 (names.Rd:34): Warning: missing </ul> before </div>
Maintainer: ‘Ivan Popivanov <ivan.popivanov@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Popivanov",
                    role = c("aut", "cre"),
                    email = "ivan.popivanov@gmail.com")
as necessary.
Maintainer: ‘Friederike Deiters <deiters@statistik.tu-dortmund.de>’

The Description field contains
  see Kinsvater et al. (2017) <arXiv:1701.06455>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Gustavo Carvalho <gustavo.bio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gustavo",
                    family = "Carvalho",
                    role = c("aut", "cre"),
                    email = "gustavo.bio@gmail.com")
as necessary.
Found the following HTML validation problems:
df2phytaxa.html:50:1 (df2phytaxa.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
format_percentage.html:54:1 (format_percentage.Rd:14): Warning: missing </ul> before </div>
is_class.html:50:1 (is_class.Rd:12): Warning: missing </ul> before </div>
quiet_prettyNum.html:50:1 (quiet_prettyNum.Rd:12): Warning: missing </ul> before </div>
replace_num_in_expr.html:54:1 (replace_num_in_expr.Rd:14): Warning: missing </ul> before </div>
update_numbers.html:50:1 (update_numbers.Rd:12): Warning: missing </ul> before </div>
update_x.html:54:1 (update_x.Rd:14): Warning: missing </ul> before </div>
update_y.html:54:1 (update_y.Rd:14): Warning: missing </ul> before </div>
update_y_stack.html:62:1 (update_y_stack.Rd:18): Warning: missing </ul> before </div>
update_y_stack_unite.html:54:1 (update_y_stack_unite.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ch_flows.html:57:1 (ch_flows.Rd:16): Warning: missing </ul> before </div>
ch_locations.html:59:1 (ch_locations.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Resampler.html:203:1 (Resampler.Rd:144): Warning: <h5> anchor "Usage" already defined
Resampler.html:209:1 (Resampler.Rd:148): Warning: <h5> anchor "Returns" already defined
Resampler.html:227:1 (Resampler.Rd:158): Warning: <h5> anchor "Usage" already defined
Resampler.html:233:1 (Resampler.Rd:162): Warning: <h5> anchor "Arguments" already defined
Resampler.html:246:1 (Resampler.Rd:169): Warning: <h5> anchor "Returns" already defined
Resampler.html:263:1 (Resampler.Rd:178): Warning: <h5> anchor "Usage" already defined
Resampler.html:269:1 (Resampler.Rd:182): Warning: <h5> anchor "Arguments" already defined
checkRd: (-1) flow_embed.Rd:30: Lost braces; missing escapes or markup?
    30 | \item Don't forget to add {flow} to Suggests in your DESCRIPTION file.
       |                           ^
Maintainer: ‘Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Silvestre", "Garcia", "de", "Jalon;", "Javier", "Martinez-Lopez;", "Marta", "Gonzalez", "del", "Tanago;", "Carlos", "Alonso;", "Diego", "Garcia"),
                      family = "de Jalon",
                      role = "aut"),
               person(given = "Javier",
                      family = "Martinez-Lopez",
                      role = "cre",
                      email = "javi.martinez.lopez@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘flowdata.Rd’:
    https://doi.org/10.1007/s11269-017-1663-0
checkRd: (-1) flowdata.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{Flow}{Water flow, in m^{3}/s}
       |                              ^
Maintainer: ‘Constantinos Mavridis <consmavr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Constantinos",
                      family = "Mavridis",
                      role = c("aut", "cre"),
                      email = "consmavr@gmail.com"),
               person(given = c("Ioannis", "N."),
                      family = "Athanasiadis",
                      role = "aut"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Holger Hoefling <hhoeflin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Hoefling",
                    role = c("aut", "cre"),
                    email = "hhoeflin@gmail.com")
as necessary.

The Description field contains
  <arXiv:0910.0526>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jean-Baptiste Ferdy <jean-baptiste.ferdy@univ-tlse3.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean-Baptiste",
                    family = "Ferdy",
                    role = c("aut", "cre"),
                    email = "jean-baptiste.ferdy@univ-tlse3.fr")
as necessary.
Maintainer: ‘Alberto Hornero <alberto@hornero.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alberto",
                      family = "Hornero",
                      role = c("aut", "cre"),
                      email = "alberto@hornero.es"),
               person(given = "Nastassia",
                      family = "Vilfan",
                      role = "aut"),
               person(given = "Christiaan",
                      family = "van der Tol",
                      role = "aut"),
               person(given = "Onno",
                      family = "Muller",
                      role = "aut"),
               person(given = "Uwe",
                      family = "Rascher",
                      role = "aut"),
               person(given = "Wouter",
                      family = "Verhoef",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘fluspect.Rd’:
    https://doi.org/10.1016/j.rse.2016.09.017
Found the following HTML validation problems:
flux_cut.html:54:1 (flux_cut.Rd:14): Warning: missing </ul> before </div>
flux_fit_type.html:61:1 (flux_fit_type.Rd:20): Warning: missing </ul> before </div>
flux_fortify.html:77:1 (flux_fortify.Rd:31): Warning: missing </ul> before </div>
flux_fortify_exp.html:51:1 (flux_fortify_exp.Rd:12): Warning: missing </ul> before </div>
flux_fortify_lin.html:47:1 (flux_fortify_lin.Rd:10): Warning: missing </ul> before </div>
flux_fortify_quadratic.html:47:1 (flux_fortify_quadratic.Rd:10): Warning: missing </ul> before </div>
flux_match_col.html:60:1 (flux_match_col.Rd:18): Warning: missing </ul> before </div>
flux_match_fixed.html:57:1 (flux_match_fixed.Rd:17): Warning: missing </ul> before </div>
flux_param_exp.html:49:1 (flux_param_exp.Rd:10): Warning: missing </ul> before </div>
flux_param_kappamax.html:49:1 (flux_param_kappamax.Rd:10): Warning: missing </ul> before </div>
flux_param_lm.html:49:1 (flux_param_lm.Rd:10): Warning: missing </ul> before </div>
flux_param_qua.html:49:1 (flux_param_qua.Rd:10): Warning: missing </ul> before </div>
flux_plot_flag.html:51:1 (flux_plot_flag.Rd:12): Warning: missing </ul> before </div>
flux_plot_longpdf.html:59:1 (flux_plot_longpdf.Rd:17): Warning: missing </ul> before </div>
flux_plot_pdf.html:59:1 (flux_plot_pdf.Rd:17): Warning: missing </ul> before </div>
flux_print_plot.html:51:1 (flux_print_plot.Rd:13): Warning: missing </ul> before </div>
flux_quality_kappamax.html:103:1 (flux_quality_kappamax.Rd:47): Warning: missing </ul> before </div>
Maintainer: ‘Gerald Jurasinski <gerald.jurasinski@uni-rostock.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gerald",
                      family = "Jurasinski",
                      role = c("aut", "cre"),
                      email = "gerald.jurasinski@uni-rostock.de"),
               person(given = "Franziska",
                      family = "Koebsch",
                      role = "aut"),
               person(given = "Anke",
                      family = "Guenther",
                      role = "aut"),
               person(given = "Sascha",
                      family = "Beetz",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘flux.CH4.txt’
Author field differs from that derived from Authors@R
  Author:    ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (JOSS reviewer, <https://orcid.org/0000-0001-8172-3603>)’
  Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-8172-3603>)’
Maintainer: ‘Shwetank Lall <shwetanklall@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yan Li <yan.4.li@uconn.edu>’

The Description field contains
  <arXiv:2003.04787>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fmerPack.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
fm_area.html:56:1 (fm_area.Rd:18): Warning: missing </ul> before </div>
fmesher_qinv.html:48:1 (fmesher_qinv.Rd:10): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fmf’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fmf.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Niels G. Waller <nwaller@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Niels", "G."),
                    family = "Waller",
                    role = c("aut", "cre"),
                    email = "nwaller@umn.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) FMP.Rd:30: Lost braces; missing escapes or markup?
    30 | \eqn{m(\theta) = b_0 + b_1 \theta + b_2 \theta^2 + b_3 \theta^3}. Acceptable values of k = {0,1,2,3}. According to 
       |                                                                                            ^
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:62:1 (inst/NEWS.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
data_CompCor_Params.html:99:1 (data_CompCor_Params.Rd:62): Warning: missing </ul> before </div>
noise_Params.html:60:1 (noise_Params.Rd:25): Warning: missing </ul> before </div>
pscrub_Params.html:148:1 (pscrub_Params.Rd:93): Warning: missing </ul> before </div>
Found the following HTML validation problems:
data_CompCor_Params.html:99:1 (data_CompCor_Params.Rd:62): Warning: missing </ul> before </div>
despike_3D.interpolate.html:55:1 (despike_3D.interpolate.Rd:15): Warning: missing </ul> before </div>
noise_Params.html:60:1 (noise_Params.Rd:25): Warning: missing </ul> before </div>
plot_FC.html:110:1 (plot_FC.Rd:54): Warning: missing </ul> before </div>
Maintainer: ‘Minato Nakazawa <minatonakazawa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Minato",
                    family = "Nakazawa",
                    role = c("aut", "cre"),
                    email = "minatonakazawa@gmail.com")
as necessary.
Maintainer: ‘Luis Benites Sanchez <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"),
               person(given = c("Rocio", "Paola"),
                      family = "Maehara",
                      role = "aut"),
               person(given = c("Victor", "Hugo"),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Wilson <hmp.R.package@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Geoff",
                      family = "Robinson",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Wilson",
                      role = "cre",
                      email = "hmp.R.package@gmail.com"))
as necessary.
checkRd: (-1) Estable.Rd:40: Lost braces
    40 |   \code{dEstable}{ gives the density function;}
       |                  ^
checkRd: (-1) Estable.Rd:41: Lost braces
    41 |   \code{pEstable}{ gives the distribution function or its complement;}
       |                  ^
checkRd: (-1) Estable.Rd:42: Lost braces
    42 |   \code{qEstable}{ gives quantiles;}
       |                  ^
checkRd: (-1) Estable.Rd:43-56: Lost braces
    43 |   \code{tailsEstable}{ returns a list with the following components
       |                      ^
checkRd: (-1) FMstable.Rd:50: Lost braces
    50 |   \code{dFMstable}{ gives the density function;}
       |                   ^
checkRd: (-1) FMstable.Rd:51: Lost braces
    51 |   \code{pFMstable}{ gives the distribution function or its complement;}
       |                   ^
checkRd: (-1) FMstable.Rd:52: Lost braces
    52 |   \code{qFMstable}{ gives quantiles;}
       |                   ^
checkRd: (-1) FMstable.Rd:53-66: Lost braces
    53 |   \code{tailsFMstable}{  returns a list with the following components
       |                       ^
Maintainer: ‘Stefan Theussl <Stefan.Theussl@R-Project.org>’

The Description field contains
  <arXiv:0911.2093> to manage, investigate and analyze bivariate and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Haeran Cho <haeran.cho@bristol.ac.uk>’

The Description field contains
  methodology and Owens, Cho and Barigozzi (2024+) <arXiv:2301.11675>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mona Azadkia <monaazadkia@gmail.com>’

The Description field contains
  simple measure of conditional dependence" <arXiv:1910.12327>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
check_cran_results.html:46:1 (check_cran_results.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) navbar_page.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) navbar_page.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) navbar_page.Rd:38: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
fontset_register.html:54:1 (fontset_register.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Leo N. Geppert <geppert@statistik.uni-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Leo", "N."),
                      family = "Geppert",
                      role = c("aut", "cre"),
                      email = "geppert@statistik.uni-dortmund.de"),
               person(given = "Peter",
                      family = "Gnändinger",
                      role = "ctb"),
               person(given = "Katja",
                      family = "Ickstadt",
                      role = "ctb"),
               person(given = "Björn",
                      family = "Bornkamp",
                      role = "ctb"),
               person(given = "Arno",
                      family = "Fritsch",
                      role = "ctb"),
               person(given = "Oliver",
                      family = "Kuß",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘airport_footprint.R’ ‘airport_footprint.Rd’ ‘latlong_footprint.R’
    ‘latlong_footprint.Rd’
Maintainer: ‘Tianshu Chen <tianshu129@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianshu",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "tianshu129@163.com")
as necessary.
Maintainer: ‘Marcos Bella-Fernández <marcosbellafernandez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcos",
                    family = "Bella-Fernández",
                    role = c("aut", "cre"),
                    email = "marcosbellafernandez@gmail.com")
as necessary.
Maintainer: ‘Rodrigo Aluizio <r.aluizio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rodrigo",
                    family = "Aluizio",
                    role = c("aut", "cre"),
                    email = "r.aluizio@gmail.com")
as necessary.
Maintainer: ‘Georg M. Goerg <im@gmge.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) foreca.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:78-80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:81-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:84-87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:91-92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) initialize_weightvector.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:60-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:64-65: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
common-arguments.html:105:1 (common-arguments.Rd:50): Warning: missing </ul> before </div>
Maintainer: ‘Eran Raviv  <eeraviv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eran",
                    family = "Raviv",
                    role = c("aut", "cre"),
                    email = "eeraviv@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_carga_datos.R’ ‘mod_comparacion.R’ ‘mod_descom.R’
    ‘mod_descom_utils.R’ ‘mod_desvio.R’ ‘mod_model_arima_utils.R’
    ‘mod_normal_utils.R’ ‘mod_nuevos.R’ ‘mod_periodograma.R’
    ‘mod_periodograma_utils_.R’ ‘mod_t_c.R’ ‘mod_t_c_utils.R’
    ‘mod_train_test.R’ ‘ts_utils.R’
Found the following HTML validation problems:
run_app.html:46:1 (run_app.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
checkCVArguments.html:56:1 (checkCVArguments.Rd:16): Warning: missing </ul> before </div>
checkModelArgs.html:50:1 (checkModelArgs.Rd:12): Warning: missing </ul> before </div>
checkParallelArguments.html:50:1 (checkParallelArguments.Rd:12): Warning: missing </ul> before </div>
plotFitted.html:55:1 (plotFitted.Rd:15): Warning: missing </ul> before </div>
plotModelObjects.html:55:1 (plotModelObjects.Rd:15): Warning: missing </ul> before </div>
prepareTimeseries.html:46:1 (prepareTimeseries.Rd:10): Warning: missing </ul> before </div>
removeModels.html:50:1 (removeModels.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Nickalus Redell <nickalusredell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nickalus",
                    family = "Redell",
                    role = c("aut", "cre"),
                    email = "nickalusredell@gmail.com")
as necessary.
Found the following HTML validation problems:
is.constant.html:46:1 (is.constant.Rd:10): Warning: missing </ul> before </div>
is.ets.html:62:1 (is.ets.Rd:35): Warning: missing </ul> before </div>
is.forecast.html:50:1 (is.forecast.Rd:16): Warning: missing </ul> before </div>
modeldf.html:50:1 (modeldf.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Tobias Kley <tobias.kley@bristol.ac.uk>’

The Description field contains
  <arXiv:1611.04460>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘R Core Team [aut, cph, cre] (02zz1nj61), Roger Bivand [ctb, cph], Vincent J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen [ctb, cph], Rajarshi Guha [ctb, cph], Swetlana Herbrandt [ctb], Nicholas Lewin-Koh [ctb, cph], Mark Myatt [ctb, cph], Michael Nelson [ctb], Ben Pfaff [ctb], Brian Quistorff [ctb], Frank Warmerdam [ctb, cph], Stephen Weigand [ctb, cph], Free Software Foundation, Inc. [cph]’
  Authors@R: ‘R Core Team [aut, cph, cre] (ROR: <https://ror.org/02zz1nj61>), Roger Bivand [ctb, cph], Vincent J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen [ctb, cph], Rajarshi Guha [ctb, cph], Swetlana Herbrandt [ctb], Nicholas Lewin-Koh [ctb, cph], Mark Myatt [ctb, cph], Michael Nelson [ctb], Ben Pfaff [ctb], Brian Quistorff [ctb], Frank Warmerdam [ctb, cph], Stephen Weigand [ctb, cph], Free Software Foundation, Inc. [cph]’
Maintainer: ‘Tom Wilson <tpw2@aber.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Melanie Ganz (2014) <arXiv:1410.2838>.  Methods for calculating the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Haddouchi Maïssae <maissaem7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haddouchi",
                    family = "Maïssae",
                    role = c("aut", "cre"),
                    email = "maissaem7@gmail.com")
as necessary.
Maintainer: ‘Benjamin Lu <b.lu@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benjamin",
                      family = "Lu",
                      role = c("aut", "cre"),
                      email = "b.lu@berkeley.edu"),
               person(given = "Johanna",
                      family = "Hardin",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
summary.html:64:1 (summary.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Nick Kennedy <r@nick-kennedy.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Kennedy",
                    role = c("aut", "cre"),
                    email = "r@nick-kennedy.com")
as necessary.
Found the following HTML validation problems:
check_errors.html:160:1 (check_errors.Rd:92): Warning: missing </ul> before </div>
make_arrow.html:77:1 (make_arrow.Rd:31): Warning: missing </ul> before </div>
xscale.html:65:1 (xscale.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
drawHorizontalLines.html:56:1 (drawHorizontalLines.Rd:16): Warning: missing </ul> before </div>
prepLines.html:67:1 (prepLines.Rd:23): Warning: missing </ul> before </div>
safeLoadPackage.html:46:1 (safeLoadPackage.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) process_pcl.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{pavd}{logical input to include Plant Area Volume Density Plot from {plot_pavd},
       |                                                                          ^
Maintainer: ‘Srihari Jaganathan <sriharitn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Srihari",
                    family = "Jaganathan",
                    role = c("aut", "cre"),
                    email = "sriharitn@gmail.com")
as necessary.
Maintainer: ‘Kevin Kuo <kevin.kuo@rstudio.com>’

Found the following (possibly) invalid file URI:
  URI: .github/CODE_OF_CONDUCT.md
    From: README.md
Found the following HTML validation problems:
certify.html:89:1 (certify.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
formattableOutput.html:54:1 (formattableOutput.Rd:14): Warning: missing </ul> before </div>
renderFormattable.html:55:1 (renderFormattable.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
basemethods.html:51:1 (basemethods.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add.backtick.html:54:1 (add.backtick.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
familias.html:50:1 (familias.Rd:11): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘str_extract_part.R’
Found the following HTML validation problems:
install_fortls_python_deps.html:50:1 (install_fortls_python_deps.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
threshold_peaks.html:76:1 (threshold_peaks.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Matthew J. Vavrek <matthew@matthewvavrek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "J."),
                    family = "Vavrek",
                    role = c("aut", "cre"),
                    email = "matthew@matthewvavrek.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
SAtree.html:50:1 (SAtree.Rd:12): Warning: missing </ul> before </div>
summary.taxonomy.html:63:1 (summary.taxonomy.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Milton T Drott <mtd66@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Milton", "T"),
                    family = "Drott",
                    role = c("aut", "cre"),
                    email = "mtd66@cornell.edu")
as necessary.
checkRd: (-1) FGf.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FourgameteP.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Guillermo Basulto-Elias <guillermobasulto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guillermo",
                    family = "Basulto-Elias",
                    role = c("aut", "cre"),
                    email = "guillermobasulto@gmail.com")
as necessary.
Maintainer: ‘Steven Andrew Culpepper <sculpepp@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fourPNO.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
FieldPlot.html:54:1 (FieldPlot.Rd:14): Warning: missing </ul> before </div>
fbuttons.html:87:1 (fbuttons.Rd:31): Warning: missing </ul> before </div>
painter.html:50:1 (painter.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Salvatore D. Tomarchio <daniele.tomarchio@unict.it>’

The Description field contains
  Tomarchio et al. (2020) <arXiv:2107.04330>.  The matrix-variate normal
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jinlu Cao <caojinlu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jinlu",
                    family = "Cao",
                    role = c("aut", "cre"),
                    email = "caojinlu@gmail.com")
as necessary.
Maintainer: ‘Salil Koner <salil.koner@duke.edu>’

The Description field contains
  (2023) <arXiv:2302.05612> respectively.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nan Lin <edmondlinnan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nan",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "edmondlinnan@gmail.com"),
               person(given = "Momiao",
                      family = "Xiong",
                      role = "aut"))
as necessary.
Maintainer: ‘S.Sampath <sampath1959@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "S.Sampath",
                    role = c("aut", "cre"),
                    email = "sampath1959@gmail.com")
as necessary.
checkRd: (-1) plot_lines.Rd:66: Lost braces
    66 | moderator. By default it is equal to \8code{c(19, 17, 15, 8, 5, 4, 3, 1)}.}
       |                                            ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |     ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |                                        ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |                                              ^
checkRd: (-1) Fpop.Rd:9: Lost braces; missing escapes or markup?
     9 | m_{i+1}), where the indicator function I counts the number of
       |   ^
Maintainer: ‘Guillem Rigaill <guillem.rigaill@inrae.fr>’

The Description field contains
  <arXiv:1004.0887> algorithm for detecting multiple changepoints in the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
nlminb2Control.html:111:1 (nlminb2Control.Rd:63): Warning: missing </ul> before </div>
Maintainer: ‘Juan J. Serrano-Perez <jjserra@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patricia",
                      family = "Roman-Roman",
                      role = "aut"),
               person(given = c("Juan", "J."),
                      family = "Serrano-Perez",
                      role = c("aut", "cre"),
                      email = "jjserra@ugr.es"),
               person(given = "Francisco",
                      family = "Torres-Ruiz.",
                      role = "aut"))
as necessary.
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/RobinHankin/frab
which should likely be
  https://github.com/RobinHankin/frab/issues
instead.
Maintainer: ‘Shawn Garbett <Shawn@Garbett.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shawn",
                      family = "Garbett",
                      role = c("aut", "cre"),
                      email = "shawn@garbett.org"),
               person(given = "Darren",
                      family = "Tyson",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘fracprolif-package.Rd’:
    \keyword{ package, quiescence, growth }
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Don",
                      family = "Percival",
                      role = "aut",
                      email = "dbp@apl.washington.edu"),
               person(given = "Tilmann",
                      family = "Gneiting",
                      role = "aut",
                      email = "tilmann@stat.washington.edu"))
as necessary.
Maintainer: ‘Philipp Hermann <philipp.hermann@jku.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Philipp",
                      family = "Hermann",
                      role = c("aut", "cre"),
                      email = "philipp.hermann@jku.at"),
               person(given = "Jozef",
                      family = "Kiselak",
                      role = "aut"),
               person(given = "Milan",
                      family = "Stehlik",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/PhHermann/FractalParameterEstimation
which should likely be
  https://github.com/PhHermann/FractalParameterEstimation/issues
instead.
Maintainer: ‘Bill Venables <bill.venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Maintainer: ‘OuYang Ming <oula2004@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "OuYang",
                    family = "Ming",
                    role = c("aut", "cre"),
                    email = "oula2004@163.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giovanny",
                      family = "Covarrubias-Pazaran",
                      role = c("aut", "cre"),
                      email = "covarrubiasp@wisc.edu"),
               person(given = "Luis",
                      family = "Diaz-Garcia",
                      role = "aut"),
               person(given = "Brandon",
                      family = "Schlautman",
                      role = "aut"),
               person(given = "Walter",
                      family = "Salazar",
                      role = "aut"),
               person(given = "Juan",
                      family = "Zalapa.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Theodor Adrian Balan <hello@tbalan.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Theodor", "Adrian"),
                      family = "Balan",
                      role = c("aut", "cre"),
                      email = "hello@tbalan.com"),
               person(given = "Hein",
                      family = "Putter",
                      role = "aut"))
as necessary.
checkRd: (-1) emfrail_control.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:55-57: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Maengseok Noh <msnoh@pknu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Il", "Do"),
                      family = "Ha",
                      role = "aut"),
               person(given = "Maengseok",
                      family = "Noh",
                      role = c("aut", "cre"),
                      email = "msnoh@pknu.ac.kr"),
               person(given = "Jiwoong",
                      family = "Kim",
                      role = "aut"),
               person(given = "Youngjo",
                      family = "Lee",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
CmpRsk.html:53:1 (CmpRsk.Rd:17): Warning: missing </ul> before </div>
frailty.vs.html:90:1 (frailty.vs.Rd:26): Warning: missing </ul> before </div>
hlike.frailty.html:89:1 (hlike.frailty.Rd:31): Warning: missing </ul> before </div>
jmfit.html:65:1 (jmfit.Rd:20): Warning: missing </ul> before </div>
jointmodeling.html:73:1 (jointmodeling.Rd:24): Warning: missing </ul> before </div>
mlmfit.html:67:1 (mlmfit.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.fpen.html:50:1 (plot.fpen.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
RocFun.html:66:1 (RocFun.Rd:20): Warning: missing </ul> before </div>
dnorkernel.html:50:1 (dnorkernel.Rd:12): Warning: missing </ul> before </div>
integ.html:58:1 (integ.Rd:16): Warning: missing </ul> before </div>
muro.html:46:1 (muro.Rd:10): Warning: missing </ul> before </div>
wIQR.html:50:1 (wIQR.Rd:12): Warning: missing </ul> before </div>
wquantile.html:54:1 (wquantile.Rd:14): Warning: missing </ul> before </div>
wvar.html:54:1 (wvar.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘David Molina <dmolinam@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Arcos",
                      role = "aut",
                      email = "arcos@ugr.es"),
               person(given = c("Maria", "del", "Mar"),
                      family = "Rueda",
                      role = "aut",
                      email = "mrueda@ugr.es"),
               person(given = c("Maria", "Giovanna"),
                      family = "Ranalli",
                      role = "aut",
                      email = "giovanna.ranalli@stat.unipg.it"),
               person(given = "David",
                      family = "Molina",
                      role = c("aut", "cre"),
                      email = "dmolinam@ugr.es"))
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabor",
                      family = "Csardi",
                      role = "aut"),
               person(given = "Titus",
                      family = "Wormer",
                      role = "aut"),
               person(given = "Maciej",
                      family = "Ceglowski",
                      role = "aut"),
               person(given = c("Jacob", "R."),
                      family = "Rideout",
                      role = "aut"),
               person(given = c("and", "Kent", "S."),
                      family = "Johnson",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = "cre",
                      email = "csardi.gabor@gmail.com"))
as necessary.
Maintainer: ‘Bernhard Pfaff <bernhard@pfaffikus.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) MultiAsset.Rd:26: Escaped LaTeX specials: \&
Maintainer: ‘Guanqiao Ding <gding16@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guanqiao",
                    family = "Ding",
                    role = c("aut", "cre"),
                    email = "gding16@gmail.com")
as necessary.
Maintainer: ‘Jeonghwa Lee <leejeonghwa5@gmail.com>’

The Description field contains
  distributions. (Lee, J. (2023) <arXiv:2209.01516>.)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:42:1 (inst/NEWS.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Christoph Bergmeir <c.bergmeir@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lala", "Septem"),
                      family = "Riza",
                      role = "aut"),
               person(given = "Christoph",
                      family = "Bergmeir",
                      role = c("aut", "cre"),
                      email = "c.bergmeir@decsai.ugr.es"),
               person(given = "Francisco",
                      family = "Herrera",
                      role = "aut"),
               person(given = c("Jose", "Manuel"),
                      family = "Benitez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) summary.frbs.Rd:32: Lost braces
    32 |                           \code{"GAUSSIAN"}, code{"TRIANGLE"}, \code{"TRAPEZOID"}, \code{"SIGMOID"}, and \code{"BELL"}.
       |                                                  ^
checkRd: (-1) summary.frbs.Rd:60: Lost braces; missing escapes or markup?
    60 |          {4.0, 0.23, 0.43, 0.53, 0.73} on its column. It means that the label a.2 of variable v.1 
       |          ^
Found the following HTML validation problems:
ANFIS.update.html:74:1 (ANFIS.update.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Philippe Courcoux <philippe.courcoux@oniris-nantes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philippe",
                    family = "Courcoux",
                    role = c("aut", "cre"),
                    email = "philippe.courcoux@oniris-nantes.fr")
as necessary.
Found the following HTML validation problems:
check.dtype.for.data.html:50:1 (check.dtype.for.data.Rd:12): Warning: missing </ul> before </div>
fileopen.gz.or.not.html:46:1 (fileopen.gz.or.not.Rd:10): Warning: missing </ul> before </div>
fwrite3.html:50:1 (fwrite3.Rd:12): Warning: missing </ul> before </div>
linesplit.fixed.html:63:1 (linesplit.fixed.Rd:21): Warning: missing </ul> before </div>
print.fs.annot.html:51:1 (print.fs.annot.Rd:12): Warning: missing </ul> before </div>
print.fs.label.html:51:1 (print.fs.label.Rd:12): Warning: missing </ul> before </div>
print.fs.patch.html:51:1 (print.fs.patch.Rd:12): Warning: missing </ul> before </div>
print.fs.surface.html:51:1 (print.fs.surface.Rd:12): Warning: missing </ul> before </div>
print.fs.volume.html:51:1 (print.fs.volume.Rd:12): Warning: missing </ul> before </div>
read.element.counts.ply.header.html:46:1 (read.element.counts.ply.header.Rd:10): Warning: missing </ul> before </div>
rotate90.html:54:1 (rotate90.Rd:14): Warning: missing </ul> before </div>
stl.format.file.is.ascii.html:46:1 (stl.format.file.is.ascii.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Athanasse Zafirov <zafirov@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Maintainer: ‘Kenneth W. Moffett <kmoffet@siue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Feldman",
                      role = "aut",
                      email = "tfeldma@siue.edu"),
               person(given = c("Kenneth", "W."),
                      family = "Moffett",
                      role = c("aut", "cre"),
                      email = "kmoffet@siue.edu"))
as necessary.
Maintainer: ‘Kidzinski L. <lukasz.kidzinski@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hormann",
                      family = "S.",
                      role = "aut"),
               person(given = "Kidzinski",
                      family = "L.",
                      role = c("aut", "cre"),
                      email = "lukasz.kidzinski@stanford.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fts.freqdom.Rd: freqdom
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘tseries’
Maintainer: ‘Kidzinski L. <lukasz.kidzinski@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hormann",
                      family = "S.",
                      role = "aut"),
               person(given = "Kidzinski",
                      family = "L.",
                      role = c("aut", "cre"),
                      email = "lukasz.kidzinski@stanford.edu"))
as necessary.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("aut", "cre"),
                      email = "normmatloff@gmail.com"),
               person(given = "Yingkang",
                      family = "Xie",
                      role = "aut",
                      email = "yingkang.xie@gmail.com"))
as necessary.
Maintainer: ‘Masaaki Sudo <masaaki@sudori.info>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Annegret Grimm <annegret.grimm@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Annegret", "Grimm", "&", "Klaus"),
                      family = "Henle",
                      role = "aut"),
               person(given = "Annegret",
                      family = "Grimm",
                      role = "cre",
                      email = "annegret.grimm@ufz.de"))
as necessary.
Maintainer: ‘Alistair Wilcox <frequency@alistairwilcox.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alistair",
                    family = "Wilcox",
                    role = c("aut", "cre"),
                    email = "frequency@alistairwilcox.com")
as necessary.
Maintainer: ‘Jose Gerardo Tamez-Pena <jose.tamezpena@tec.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "Gerardo"),
                      family = "Tamez-Pena",
                      role = c("aut", "cre"),
                      email = "jose.tamezpena@tec.mx"),
               person(given = "Antonio",
                      family = "Martinez-Torteya",
                      role = "aut"),
               person(given = "Israel",
                      family = "Alanis",
                      role = "aut"),
               person(given = "Jorge",
                      family = "Orozco",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/FRESHD.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) maximin.Rd:197: Lost braces
   197 | Meinshausen, N and P. B{u}hlmann (2015). Maximin effects in inhomogeneous large-scale data.
       |                        ^
Found the following HTML validation problems:
use_pretty.html:48:1 (use_pretty.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pb.html:271:1 (pb.Rd:193): Warning: <h3> anchor "Warning" already defined
'library' or 'require' call not declared from: ‘gridExtra’
Found the following HTML validation problems:
SRE.predict.html:46:1 (SRE.predict.Rd:10): Warning: missing </ul> before </div>
coef_uncertainty.html:64:1 (coef_uncertainty.Rd:21): Warning: missing </ul> before </div>
initialize-manifold-method.html:47:1 (initialize-manifold-method.Rd:10): Warning: missing </ul> before </div>
loglik.html:49:1 (loglik.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Lijun Wang <szcfweiya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lijun",
                    family = "Wang",
                    role = c("aut", "cre", "cph"),
                    email = "szcfweiya@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Coelli",
                      role = "aut"),
               person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aidan Lakshman <ahl27@pitt.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/ahl27/froth/issues/new/choose
which should likely be
  https://github.com/ahl27/froth/issues/new/choose/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_data_frame.Rd’ ‘as_list.Rd’ ‘dplyr_methods.Rd’ ‘fr_schema.R’
    ‘fr_tdr.R’ ‘read_fr_tdr.R’ ‘update_field.R’ ‘update_field.Rd’
Maintainer: ‘Carlos Miranda <carlos.miranda@unavarra.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Miranda",
                    role = c("aut", "cre"),
                    email = "carlos.miranda@unavarra.es")
as necessary.
Found the following HTML validation problems:
FSA-defunct.html:72:1 (FSA-defunct.Rd:50): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:218:1 (inst/NEWS.Rd:89): Warning: missing </ul> before </div>
NEWS.html:54:1 (inst/NEWS.Rd:21): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:72:1 (inst/NEWS.Rd:29): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:89:1 (inst/NEWS.Rd:38): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:106:1 (inst/NEWS.Rd:45): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:127:1 (inst/NEWS.Rd:54): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:147:1 (inst/NEWS.Rd:62): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:165:1 (inst/NEWS.Rd:70): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:192:1 (inst/NEWS.Rd:81): Warning: <h4> anchor "NEW-FEATURES" already defined
Maintainer: ‘Lars Kotthoff <larsko@uwyo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Romanski",
                      role = "aut"),
               person(given = "Lars",
                      family = "Kotthoff",
                      role = c("aut", "cre"),
                      email = "larsko@uwyo.edu"),
               person(given = "Patrick",
                      family = "Schratz",
                      role = "aut"))
as necessary.
checkRd: (-1) FSelector-package.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) relief.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) relief.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Michela Battauz <michela.battauz@uniud.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michela",
                    family = "Battauz",
                    role = c("aut", "cre"),
                    email = "michela.battauz@uniud.it")
as necessary.
checkRd: (-1) report.Rd:18: Lost braces; missing escapes or markup?
    18 |         \item{las}{numeric in {0,1,2,3}; the style of axis labels (see \code{\link{par}}).}
       |                               ^
Maintainer: ‘Rajen D. Shah <r.shah@statslab.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hyun", "Jik"),
                      family = "Kim",
                      role = "aut"),
               person(given = c("Rajen", "D."),
                      family = "Shah",
                      role = c("aut", "cre"),
                      email = "r.shah@statslab.cam.ac.uk"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
dir_tree.html:76:1 (dir_tree.Rd:27): Warning: missing </ul> before </div>
file_chown.html:56:1 (file_chown.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Felix Schönbrodt <felix@nicebread.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Felix",
                      family = "Schönbrodt",
                      role = c("aut", "cre"),
                      email = "felix@nicebread.de"),
               person(given = "Lara",
                      family = "Stas",
                      role = "aut"),
               person(given = "Tom",
                      family = "Loeys",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:385:1 (inst/NEWS.Rd:202): Warning: missing </ul> before </div>
NEWS.html:40:1 (inst/NEWS.Rd:18): Warning: <h4> anchor "Changes" already defined
NEWS.html:55:1 (inst/NEWS.Rd:27): Warning: <h4> anchor "Changes" already defined
NEWS.html:70:1 (inst/NEWS.Rd:37): Warning: <h4> anchor "Changes" already defined
NEWS.html:94:1 (inst/NEWS.Rd:50): Warning: <h4> anchor "Changes" already defined
NEWS.html:109:1 (inst/NEWS.Rd:60): Warning: <h4> anchor "Changes" already defined
NEWS.html:136:1 (inst/NEWS.Rd:74): Warning: <h4> anchor "Changes" already defined
NEWS.html:169:1 (inst/NEWS.Rd:89): Warning: <h4> anchor "Changes" already defined
NEWS.html:187:1 (inst/NEWS.Rd:99): Warning: <h4> anchor "Changes" already defined
NEWS.html:205:1 (inst/NEWS.Rd:109): Warning: <h4> anchor "Changes" already defined
NEWS.html:223:1 (inst/NEWS.Rd:120): Warning: <h4> anchor "Changes" already defined
NEWS.html:262:1 (inst/NEWS.Rd:143): Warning: <h4> anchor "New-Features" already defined
NEWS.html:304:1 (inst/NEWS.Rd:164): Warning: <h4> anchor "New-Features" already defined
NEWS.html:321:1 (inst/NEWS.Rd:174): Warning: <h4> anchor "New-Features" already defined
NEWS.html:345:1 (inst/NEWS.Rd:187): Warning: <h4> anchor "New-Features" already defined
NEWS.html:362:1 (inst/NEWS.Rd:195): Warning: <h4> anchor "Changes" already defined
Found the following HTML validation problems:
equalMeans.html:50:1 (equalMeans.Rd:12): Warning: missing </ul> before </div>
mod.html:50:1 (mod.Rd:12): Warning: missing </ul> before </div>
predict.fSRM.html:55:1 (predict.fSRM.Rd:14): Warning: missing </ul> before </div>
update.fSRM.html:55:1 (update.fSRM.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Xin Zhou <xxz220@miami.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "xxz220@miami.edu"),
               person(given = "Xiaodong",
                      family = "Cai",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
FDR.html:54:1 (FDR.Rd:14): Warning: missing </ul> before </div>
TPR.html:54:1 (TPR.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Nicolas Ewen <nicolas.ewen.math@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolas",
                    family = "Ewen",
                    role = c("aut", "cre"),
                    email = "nicolas.ewen.math@gmail.com")
as necessary.
Maintainer: ‘Sarah P. Flanagan <spflanagan.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sarah", "P."),
                      family = "Flanagan",
                      role = c("aut", "cre"),
                      email = "spflanagan.phd@gmail.com"),
               person(given = c("Adam", "G."),
                      family = "Jones",
                      role = "aut"))
as necessary.
Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@umich.edu")
as necessary.
Found the following HTML validation problems:
compress_fst.html:61:1 (compress_fst.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Found the following HTML validation problems:
null_to_na.html:46:1 (null_to_na.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Tobias Setz <tobias.setz@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diethelm",
                      family = "Wuertz",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Setz",
                      role = "cre",
                      email = "tobias.setz@live.com"),
               person(given = "Yohan",
                      family = "Chalabi",
                      role = "ctb"))
as necessary.
Maintainer: ‘Sare Amerifar <sare.ameri.01@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sare",
                    family = "Amerifar",
                    role = c("aut", "cre"),
                    email = "sare.ameri.01@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utility_fSACF.R’
checkRd: (-1) Spec_compare_localize_freq.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:52: Escaped LaTeX specials: \&
Found the following HTML validation problems:
Epanechnikov_kernel.html:46:1 (Epanechnikov_kernel.Rd:10): Warning: missing </ul> before </div>
Get_noise_sd.html:50:1 (Get_noise_sd.Rd:12): Warning: missing </ul> before </div>
Marginal_basis_pval.html:64:1 (Marginal_basis_pval.Rd:20): Warning: missing </ul> before </div>
plot.SampleSpec.html:51:1 (plot.SampleSpec.Rd:12): Warning: missing </ul> before </div>
plot.SampleSpecDiffFreqCurvelength.html:55:1 (plot.SampleSpecDiffFreqCurvelength.Rd:14): Warning: missing </ul> before </div>
plot.SpecMA.html:51:1 (plot.SpecMA.Rd:12): Warning: missing </ul> before </div>
print.SampleSpecDiffFreqCurvelength.html:51:1 (print.SampleSpecDiffFreqCurvelength.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘combine_fude.R’ ‘extract_fude.R’ ‘get_boundary.R’ ‘ls_fude.R’
    ‘read_fude.R’ ‘rename_fude.Rd’
Maintainer: ‘Jiangtao Gou <gouRpackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiangtao",
                      family = "Gou",
                      role = c("aut", "cre"),
                      email = "gourpackage@gmail.com"),
               person(given = "Fengqing",
                      family = "Zhang",
                      role = "aut",
                      comment = "Zoe"))
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xinran",
                      family = "Li",
                      role = "aut"),
               person(given = c("Paul", "R."),
                      family = "Rosenbaum",
                      role = c("aut", "cre"),
                      email = "rosenbaum@wharton.upenn.edu"))
as necessary.
Found the following HTML validation problems:
yes_no.html:60:1 (yes_no.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Aimee Lee Houde <aimee.lee.houde@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aimee", "Lee"),
                      family = "Houde",
                      role = c("aut", "cre"),
                      email = "aimee.lee.houde@gmail.com"),
               person(given = "Trevor",
                      family = "Pitcher",
                      role = "aut"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Paula Weidemueller [aut, cre, cph] (<https://orcid.org/0000-0003-3867-3131>, @PaulaH_W), Constantin Ahlmann-Eltze [aut] (<https://orcid.org/0000-0002-3762-068X>, @const_ae)’
  Authors@R: ‘Paula Weidemueller [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-3867-3131>, Twitter: @PaulaH_W), Constantin Ahlmann-Eltze [aut] (ORCID: <https://orcid.org/0000-0002-3762-068X>, Twitter: @const_ae)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘find_connected_components.R’
Maintainer: ‘Bryan A. Hanson <hanson@depauw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bryan", "A.", "Hanson", "DePauw"),
                      family = "University",
                      role = "aut"),
               person(given = c("Greencastle", "Indiana"),
                      family = "USA",
                      role = "aut"),
               person(given = c("Bryan", "A."),
                      family = "Hanson",
                      role = "cre",
                      email = "hanson@depauw.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Barinder Thind <barinder.thi@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  discussion found in Thind, Multani and Cao (2020) <arXiv:2006.09590>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Danenberg <pcd@roxygen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Danenberg",
                    role = c("aut", "cre"),
                    email = "pcd@roxygen.org")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following HTML validation problems:
dot-scalarProduct.html:50:1 (dot-scalarProduct.Rd:12): Warning: missing </ul> before </div>
print.funData.html:48:1 (print.funData.Rd:10): Warning: missing </ul> before </div>
print.irregFunData.html:48:1 (print.irregFunData.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Bouveyron",
                    role = c("aut", "cre"),
                    email = "charles.bouveyron@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Ravgr.Rd’ ‘TaylorRussell.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  promaxQ.Rd: GPForth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
obj_func.html:116:1 (obj_func.Rd:56): Warning: missing </ul> before </div>
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = c("aut", "cre"),
                      email = "charles.bouveyron@gmail.com"),
               person(given = "Julien",
                      family = "Jacques",
                      role = "aut"),
               person(given = "Amandine",
                      family = "Schmutz",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.fd.Rd:69-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.fd.Rd:72-77: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.fd.Rd: lines.fd, plotfit.fd
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John J. Dziak <dziakj1@gmail.com>’

The Description field contains
  Piper & Li (2021) <arXiv:2112.03960>. The model is similar to that of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  SobolDiss.cpp:16:17: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = subview<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  probKMAImpl.cpp:749:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/funMoDisco.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following HTML validation problems:
after_join_all.html:70:1 (after_join_all.Rd:24): Warning: missing </ul> before </div>
distinct_events.html:58:1 (distinct_events.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
limits.html:46:1 (limits.Rd:10): Warning: missing </ul> before </div>
outliers.html:46:1 (outliers.Rd:10): Warning: missing </ul> before </div>
phi.html:46:1 (phi.Rd:10): Warning: missing </ul> before </div>
source_data.html:46:1 (source_data.Rd:10): Warning: missing </ul> before </div>
tau2.html:46:1 (tau2.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Matthew Kumar <mattkumar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "mattkumar@gmail.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: www.ncbi.nlm.nih.gov/pubmed/15568194
    From: inst/doc/introduction.html
'library' or 'require' calls not declared from:
  ‘rgl’ ‘tuneR’
Found the following HTML validation problems:
plot.funeigen.html:76:1 (plot.funeigen.Rd:25): Warning: missing </ul> before </div>
plot.funreg.html:69:1 (plot.funreg.Rd:26): Warning: missing </ul> before </div>
print.funreg.html:62:1 (print.funreg.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
render_funr.html:51:1 (render_funr.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Andre Rehage <rehage@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andre",
                    family = "Rehage",
                    role = c("aut", "cre"),
                    email = "rehage@statistik.tu-dortmund.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘FUNTA-package.Rd’:
    \keyword{ package
      classif
      robust}
Found the following HTML validation problems:
to_latex.html:93:1 (to_latex.Rd:39): Warning: missing </ul> before </div>
Maintainer: ‘Frank Dondelinger <fdondelinger.work@gmail.com>’

The Description field contains
  in detail in Dondelinger and Mukherjee (2017) <arXiv:1611.00953>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
fusionMultiPlot-shiny.html:68:1 (fusionMultiPlot-shiny.Rd:25): Warning: missing </ul> before </div>
fusionPlotOutput.html:68:1 (fusionPlotOutput.Rd:24): Warning: missing </ul> before </div>
Maintainer: ‘Yuan Zhong <aqua.zhong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin",
                      family = "Gao",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Zhong",
                      role = c("aut", "cre"),
                      email = "aqua.zhong@gmail.com"),
               person(given = c("Raymond", "J."),
                      family = "Carroll",
                      role = "aut"))
as necessary.

The Description field contains
  Raymond J. Carroll (2017) <arXiv:1610.00667v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Brian Lee Yung Rowe <r@zatonovo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brian", "Lee", "Yung"),
                    family = "Rowe",
                    role = c("aut", "cre"),
                    email = "r@zatonovo.com")
as necessary.
Maintainer: ‘Brian Lee Yung Rowe <r@zatonovo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brian", "Lee", "Yung"),
                    family = "Rowe",
                    role = c("aut", "cre"),
                    email = "r@zatonovo.com")
as necessary.
Found the following files/directories:
  ‘completeTrial_byArm_eventPriorRateC3=0.001_eventPriorRateT1=0_eventPriorRateT2=0_eventPriorWt=0.5.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.2.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.4.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.6.RData’
  ‘completeTrial_pooled_eventPriorRate=0.001_eventPriorWt=0.5.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.2.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.4.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.6.RData’
  ‘rcdf_byArm_arm=T1_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03.pdf’
  ‘rcdf_pooled_eventPriorRate=0.06.pdf’
Found the following HTML validation problems:
BatchtoolsFutureError.html:46:1 (BatchtoolsFutureError.Rd:10): Warning: missing </ul> before </div>
grapes-resources-grapes.html:53:1 (grapes-resources-grapes.Rd:15): Warning: missing </ul> before </div>
print.BatchtoolsFuture.html:51:1 (print.BatchtoolsFuture.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
CallrFutureError.html:46:1 (CallrFutureError.Rd:10): Warning: missing </ul> before </div>
print.CallrFuture.html:51:1 (print.CallrFuture.Rd:12): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Fuzzy_DBScan.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
Fuzzy_DBScan.html:178:1 (Fuzzy_DBScan.Rd:147): Warning: <h5> anchor "Usage" already defined
Fuzzy_DBScan.html:184:1 (Fuzzy_DBScan.Rd:151): Warning: <h5> anchor "Arguments" already defined
Fuzzy_DBScan.html:223:1 (Fuzzy_DBScan.Rd:180): Warning: <h5> anchor "Usage" already defined
Fuzzy_DBScan.html:229:1 (Fuzzy_DBScan.Rd:184): Warning: <h5> anchor "Arguments" already defined
Fuzzy_DBScan.html:256:1 (Fuzzy_DBScan.Rd:201): Warning: <h5> anchor "Usage" already defined
Fuzzy_DBScan.html:262:1 (Fuzzy_DBScan.Rd:205): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
summary.impTest.html:51:1 (summary.impTest.Rd:12): Warning: missing </ul> before </div>
summary.metComp.html:51:1 (summary.metComp.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Alina Petukhova <petukhova.alina@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alina",
                    family = "Petukhova",
                    role = c("aut", "cre"),
                    email = "petukhova.alina@gmail.com")
as necessary.
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Marek Gagolewski <marek@gagolewski.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                             ^
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                                                     ^
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Charles", "J."),
                    family = "Geyer",
                    role = c("aut", "cre"),
                    email = "charlie@stat.umn.edu")
as necessary.
checkRd: (-1) genmf.Rd:26: Lost braces; missing escapes or markup?
    26 | \item 'gbellmf' is c(\code{a, b, c}), where \code{a} denotes the width, \code{b} is usually positive and {c} locates the center of the curve.
       |                                                                                                          ^
Found the following HTML validation problems:
writefis.html:50:1 (writefis.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Asun Lubiano <lubiano@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Asun",
                      family = "Lubiano",
                      role = c("aut", "cre"),
                      email = "lubiano@uniovi.es"),
               person(given = c("Sara", "de", "la", "Rosa"),
                      family = "de Saa",
                      role = "aut",
                      email = "rosasara@uniovi.es"))
as necessary.
Maintainer: ‘Mikkel Meyer Andersen <mikl@math.aau.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mikkel", "Meyer"),
                      family = "Andersen",
                      role = c("aut", "cre"),
                      email = "mikl@math.aau.dk"),
               person(given = c("Poul", "Svante"),
                      family = "Eriksen",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
'::' or ':::' import not declared from: ‘here’
'library' or 'require' calls not declared from:
  ‘dplyr’ ‘here’ ‘scales’ ‘tidyverse’
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘confint.fxregimes.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxlm.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxmonitor.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxregimes.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxreturns.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
  File ‘fxtools.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.12.005
Found the following HTML validation problems:
next_fy.html:53:1 (next_fy.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Regis K. Gallon <reg.gallon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Regis", "K."),
                      family = "Gallon",
                      role = c("aut", "cre"),
                      email = "reg.gallon@gmail.com",
                      comment = "MNHN"),
               person(given = "Jerome",
                      family = "Fournier",
                      role = "aut",
                      comment = c(ROR = "CNRS|MNHN")))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Farimah Houshmand Nanehkaran <hoshmandcomputer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Farimah", "Houshmand"),
                      family = "Nanehkaran",
                      role = c("aut", "cre"),
                      email = "hoshmandcomputer@gmail.com"),
               person(given = c("Seyed", "Mohammad", "Reza"),
                      family = "Lajevardi",
                      role = "aut",
                      email = "R.Lajevardi@iaukashan.ac.ir"),
               person(given = c("Mahmoud", "Mahlouji"),
                      family = "Bidgholi",
                      role = "aut",
                      email = "m.mahlouji@iaukashan.ac.ir"))
as necessary.
Maintainer: ‘Magali Champion <magali.champion@parisdescartes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Magali",
                      family = "Champion",
                      role = c("aut", "cre"),
                      email = "magali.champion@parisdescartes.fr"),
               person(given = "Victor",
                      family = "Picheny",
                      role = "aut"),
               person(given = "Matthieu",
                      family = "Vignes",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
likelihood_tagging_ckmr.html:100:1 (likelihood_tagging_ckmr.Rd:54): Warning: <h4> anchor "obs_data" already defined
run_tmb.html:211:1 (run_tmb.Rd:130): Warning: <h4> anchor "g3_tmb_adfun" already defined
run_tmb.html:217:1 (run_tmb.Rd:131): Warning: <h4> anchor "g3_tmb_fn" already defined
Maintainer: ‘Telford Tendys <gafit@lnx-bsp.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Telford",
                    family = "Tendys",
                    role = c("aut", "cre"),
                    email = "gafit@lnx-bsp.net")
as necessary.
File ‘gafit/libs/gafit.so’:
  Found non-API calls to R: ‘FRAME’, ‘HASHTAB’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Bin Wang <eatingbeen@hotmail.com>’

The Description field contains
  and Jianhua Guo (2022) <arXiv:1911.00658>.  This paper provides the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
data.html:58:1 (data.Rd:17): Warning: missing </ul> before </div>
checkRd: (-1) min_hpd_inc_area_df.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) min_hpd_inc_area_df.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) min_hpd_inc_area_df.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vza_mean_and_var_rasters.Rd:20: Lost braces
    20 | of the paper on Wilson's warbler, this function computes $tilde{T}^{(mu)}$ (returned as
       |                                                                ^
checkRd: (-1) vza_mean_and_var_rasters.Rd:20: Lost braces; missing escapes or markup?
    20 | of the paper on Wilson's warbler, this function computes $tilde{T}^{(mu)}$ (returned as
       |                                                                    ^
checkRd: (-1) vza_mean_and_var_rasters.Rd:21: Lost braces; missing escapes or markup?
    21 | list component \code{mean.raster}) and $R^{(sigma^2)}$ (returned as list component
       |                                           ^
Found the following HTML validation problems:
hpd_cumul.html:46:1 (hpd_cumul.Rd:10): Warning: missing </ul> before </div>
min_hpd_inclusion_area.html:58:1 (min_hpd_inclusion_area.Rd:14): Warning: missing </ul> before </div>
private_rescale.html:61:1 (private_rescale.Rd:15): Warning: missing </ul> before </div>
vza_mean_and_var_rasters.html:57:1 (vza_mean_and_var_rasters.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Hoon Hwangbo <hhwangb1@utk.edu>’

The Description field contains
  Hwangbo, Y. Ding, and D. Cabezon (2019) <arXiv:1906.05776>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Craig A. Rolling <craig.rolling@slu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Craig", "A."),
                    family = "Rolling",
                    role = c("aut", "cre"),
                    email = "craig.rolling@slu.edu")
as necessary.
Maintainer: ‘Yao Lin <zaiyaolin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tzu-Yao",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yao",
                      family = "Lin",
                      role = "cre",
                      email = "zaiyaolin@gmail.com"))
as necessary.
Found the following HTML validation problems:
count.data_request.html:64:1 (count.data_request.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
autoStopCluster.html:46:1 (autoStopCluster.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mehmet", "Hakan"),
                    family = "Satman",
                    role = c("aut", "cre"),
                    email = "mhsatman@istanbul.edu.tr")
as necessary.
Maintainer: ‘Simon Wood <simon.wood@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Wood",
                    role = c("aut", "cre"),
                    email = "simon.wood@r-project.org")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Matthews <txm676@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gamboostMSM-package.Rd: mboost
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Koen W. De Bock <kdebock@audencia.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Koen", "W."),
                      family = "De Bock",
                      role = c("aut", "cre"),
                      email = "kdebock@audencia.com"),
               person(given = "Kristof",
                      family = "Coussement",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Sebastian Cano-Berlanga <cano.berlanga@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Cano-Berlanga",
                    role = c("aut", "cre"),
                    email = "cano.berlanga@gmail.com")
as necessary.
Found the following HTML validation problems:
summary.ClaimsRule.html:53:1 (summary.ClaimsRule.Rd:15): Warning: missing </ul> before </div>
summary.ClaimsRules.html:53:1 (summary.ClaimsRules.Rd:16): Warning: missing </ul> before </div>
summary.Game.html:53:1 (summary.Game.Rd:17): Warning: missing </ul> before </div>
summary.Nucleolus.html:53:1 (summary.Nucleolus.Rd:16): Warning: missing </ul> before </div>
summary.ShapleyShubik.html:53:1 (summary.ShapleyShubik.Rd:17): Warning: missing </ul> before </div>
summary.ShapleyValue.html:53:1 (summary.ShapleyValue.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Matt Taddy <mataddy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Taddy",
                    role = c("aut", "cre"),
                    email = "mataddy@gmail.com")
as necessary.

The Description field contains
  Paths for Concave Regularization', <arXiv:1308.5623>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) naref.Rd:13: Lost braces
    13 | \details{ For every \code{factor} or \code{character} column in \code{x}, \code{naref} sets \code{NA} as the reference level for a \code{factor} variable. Columns coded as \code{character} class are first converted to factors via \R{factor(x)}.  If \code{impute=TRUE} then the numeric columns are converted to two columns, one appended \code{.x} that contains imputed values and another appended \code{.miss} which is a binary variable indicating whether the original value was missing.  Numeric columns are returned without change if \code{impute=FALSE} or if they do not contain any missing values.  
       |                                                                                                                                                                                                                                         ^
Maintainer: ‘Abu Hossain <a.hossain@londonmet.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abu",
                      family = "Hossain",
                      role = c("aut", "cre"),
                      email = "a.hossain@londonmet.ac.uk"),
               person(given = "Robert",
                      family = "Rigby",
                      role = "aut"),
               person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = "aut"))
as necessary.
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre"),
                      email = "d.stasinopoulos@gre.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut"),
               person(given = "Nicoleta",
                      family = "Mortan",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Seipp",
                      role = "aut"))
as necessary.
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre"),
                      email = "d.stasinopoulos@londonmet.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut",
                      email = "r.rigby@londonmet.ac.uk"),
               person(given = "Paul",
                      family = "Eilers",
                      role = "aut",
                      email = "p.eilers@erasmusmc.nl"),
               person(given = c("Brian", "Marx"),
                      family = "\\email{bmarx@LSU.EDU}",
                      role = "aut"),
               person(given = c("Konstantinos", "Pateras", "with", "contributions", "from", "Larisa"),
                      family = "Kosidou.",
                      role = "aut",
                      email = "kostas.pateras@gmail.com"))
as necessary.
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre", "cph"),
                      email = "d.stasinopoulos@londonmet.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut"),
               person(given = "Fernanda",
                      family = "De Bastiani",
                      role = "aut"))
as necessary.
checkRd: (-1) pc.Rd:17: Lost braces
    17 | The functions \code{gamlss.pcr()} and \code{gamlss.pc()} are supporting functions. The  are not intended to be called directly by users. The function \code{gamlss.pc()} is using the linear model function \code{lm()} to fit the first principal components while the function code{gamlss.pcr()} uses \code{fitPCR()}.
       |                                                                                                                                                                                                                                                                                      ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Bucket_plot.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  family_pdf.Rd: gamlss
  fitted_cdf.Rd: gamlss
  fitted_devianceIncr.Rd: gamlss
  model_pca.Rd: gamlss
  resid_plot.Rd: gamlss, plot.gamlss
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre"),
                      email = "d.stasinopoulos@gre.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut",
                      email = "r.rigby@gre.ac.uk"))
as necessary.
Maintainer: ‘Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikis",
                      family = "Stasinopoulos",
                      role = c("aut", "cre"),
                      email = "d.stasinopoulos@gre.ac.uk"),
               person(given = "Bob",
                      family = "Rigby",
                      role = "aut",
                      email = "r.rigby@gre.ac.uk"))
as necessary.
Maintainer: ‘Martha Corrales <martha.corrales@usa.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martha",
                      family = "Corrales",
                      role = c("aut", "cre"),
                      email = "martha.corrales@usa.edu.co"),
               person(given = "Edilberto",
                      family = "Cepeda-Cuervo",
                      role = "aut"),
               person(given = c("with", "the", "colaboration", "of", "Margarita"),
                      family = "Marin",
                      role = "aut"),
               person(given = c("Maria", "Fernanda"),
                      family = "Zarate",
                      role = "aut"),
               person(given = "Ricardo",
                      family = "Duplat",
                      role = "aut"),
               person(given = c("Campo", "Elias"),
                      family = "Pardo.",
                      role = "aut"))
as necessary.
Maintainer: ‘Takayuki Kawashima <t-kawa@ism.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takayuki",
                    family = "Kawashima",
                    role = c("aut", "cre"),
                    email = "t-kawa@ism.ac.jp")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Wangjian",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Werner Mueller <werner.mueller5@chello.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Werner",
                    family = "Mueller",
                    role = c("aut", "cre"),
                    email = "werner.mueller5@chello.at")
as necessary.
Maintainer: ‘Zhaoyuan Fang <fangzhaoyuan@sibs.ac.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoyuan",
                      family = "Fang",
                      role = c("aut", "cre"),
                      email = "fangzhaoyuan@sibs.ac.cn"),
               person(given = "Weidong",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hongbin",
                      family = "Ji",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhaoyuan Fang <fangzhaoyuan@sibs.ac.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoyuan",
                      family = "Fang",
                      role = c("aut", "cre"),
                      email = "fangzhaoyuan@sibs.ac.cn"),
               person(given = "Weidong",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hongbin",
                      family = "Ji",
                      role = "aut"))
as necessary.
Maintainer: ‘F.J. Martinez-de-Pison <fjmartin@unirioja.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "F.J.",
                    family = "Martinez-de-Pison",
                    role = c("aut", "cre"),
                    email = "fjmartin@unirioja.es")
as necessary.
Maintainer: ‘Ian Lundberg <ianlundberg@ucla.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Florian Gerber <flora.fauna.gerber@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Gapfill.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:71-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ndvi.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:13: Lost braces in \itemize; meant \describe ?
Running ‘run-all.R’ [12s/15s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check('gapfill')
  Loading required package: gapfill
  Loading required package: ggplot2
  --> See ?Gapfill and https://doi.org/10.1109/TGRS.2017.2785240 <--
  [ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-Image.R:5:4'): Image ─────────────────────────────────────────
  class(Image(ndvi)) not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test-Image.R:6:4'): Image ─────────────────────────────────────────
  class(Image(ndvi[, , , 1])) not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test-Image.R:7:4'): Image ─────────────────────────────────────────
  class(Image(ndvi[, , 1, 1])) not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test-Image.R:10:4'): Image ────────────────────────────────────────
  class(Image(unname(ndvi))) not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test-Image.R:11:4'): Image ────────────────────────────────────────
  class(Image(ndvi, zlim = c(1, 2))) not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  
  [ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
ReadGRM.html:46:1 (ReadGRM.Rd:10): Warning: missing </ul> before </div>
WriteGRM.html:58:1 (WriteGRM.Rd:16): Warning: missing </ul> before </div>
WriteGRMBin.html:62:1 (WriteGRMBin.Rd:18): Warning: missing </ul> before </div>
a2g.html:50:1 (a2g.Rd:12): Warning: missing </ul> before </div>
allele.recode.html:54:1 (allele.recode.Rd:14): Warning: missing </ul> before </div>
g2a.html:46:1 (g2a.Rd:10): Warning: missing </ul> before </div>
geno.recode.html:50:1 (geno.recode.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Xinyu Song <song.xinyu@mail.shufe.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xinyu",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "song.xinyu@mail.shufe.edu.cn")
as necessary.
Maintainer: ‘Sanjeev Sariya <sanjeevsariya@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Qingsheng Huang <huangqqss@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qingsheng",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "huangqqss@126.com")
as necessary.
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                      ^
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                                      ^
checkRd: (-1) read.ctable.Rd:29: Lost braces; missing escapes or markup?
    29 | output array, {row,col}.names are not necessary \code{dimnames[[1]]} and
       |               ^
Found the following HTML validation problems:
aperm.garray.html:58:1 (aperm.garray.Rd:14): Warning: missing </ul> before </div>
as.data.frame.garray.html:58:1 (as.data.frame.garray.Rd:16): Warning: missing </ul> before </div>
margins.html:65:1 (margins.Rd:23): Warning: missing </ul> before </div>
print.garray.html:51:1 (print.garray.Rd:12): Warning: missing </ul> before </div>
psummary.html:59:1 (psummary.Rd:17): Warning: missing </ul> before </div>
read.ctable.html:91:1 (read.ctable.Rd:36): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Danny Tholen [aut, cre] (<https://orcid.org/0000-0002-9517-0939>, University of Natural Resources and Life Sciences, Vienna)’
  Authors@R: ‘Danny Tholen [aut, cre] (ORCID: <https://orcid.org/0000-0002-9517-0939>, affiliation: University of Natural Resources and Life Sciences, Vienna)’
Found the following HTML validation problems:
evaluate-methods.html:83:1 (evaluate-methods.Rd:35): Warning: missing </ul> before </div>
getEvalFun-methods.html:63:1 (getEvalFun-methods.Rd:25): Warning: missing </ul> before </div>
validData-methods.html:62:1 (validData-methods.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Fabien Navarro <fabien.navarro@math.cnrs.fr>’

The Description field contains
  (2019) <arxiv:1906.01882>.  The package also provides an interface to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
eigendec.html:48:1 (eigendec.Rd:10): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Goals.Rd: zoo
  MultiGASFit.Rd: hessian
  UniGASFit.Rd: hessian
  cpichg.Rd: xts
  fn.solnp.Rd: solnp
  sp500ret.Rd: xts
  sp500rv.Rd: xts
  usunp.Rd: xts
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Novomestky",
                    role = c("aut", "cre"),
                    email = "fnovomes@poly.edu")
as necessary.
Found the following HTML validation problems:
NcontributorsRule_identical.html:112:1 (NcontributorsRule_identical.Rd:57): Warning: missing </ul> before </div>
Maintainer: ‘Vanesa Jorda <jordav@unican.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vanesa",
                      family = "Jorda",
                      role = c("aut", "cre"),
                      email = "jordav@unican.es"),
               person(given = c("Jose", "Maria"),
                      family = "Sarabia",
                      role = "aut",
                      email = "jose.sarabia@unican.es"),
               person(given = "Markus",
                      family = "Jäntti.",
                      role = "aut",
                      email = "markus.jantti@sofi.su.se"))
as necessary.

The Description field contains
  <arXiv:1808.09831> for a detailed description of the estimation
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/gbifdb
which should likely be
  https://github.com/ropensci/gbifdb/issues
instead.
Maintainer: ‘Ryan Sun <ryansun.work@gmail.com>’

The Description field contains
  <arXiv:1710.02469> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gbm.factorplot.R’ ‘gbm.mapsf.R’
'library' or 'require' call not declared from: ‘MASS’
Found the following HTML validation problems:
init_cluster.html:47:1 (init_cluster.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Guang Yang <gyang274@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guang",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "gyang274@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gbp.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
gbp2d_viewer.html:54:1 (gbp2d_viewer.Rd:14): Warning: missing </ul> before </div>
gbp2q_viewer.html:54:1 (gbp2q_viewer.Rd:14): Warning: missing </ul> before </div>
gbp3d_viewer.html:54:1 (gbp3d_viewer.Rd:14): Warning: missing </ul> before </div>
gbp3q_viewer.html:54:1 (gbp3q_viewer.Rd:14): Warning: missing </ul> before </div>
gbp4d_viewer.html:54:1 (gbp4d_viewer.Rd:14): Warning: missing </ul> before </div>
gbp4q_viewer.html:54:1 (gbp4q_viewer.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Bin Wang <bwang@southalabama.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bin",
                      family = "Wang.",
                      role = "aut",
                      email = "bwang@southalabama.edu"),
               person(given = "Bin",
                      family = "Wang",
                      role = "cre",
                      email = "bwang@southalabama.edu"))
as necessary.
checkRd: (-1) fitgbd.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) fitgld.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) gb.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) gbd.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) gld.Rd:36: Escaped LaTeX specials: \&
Maintainer: ‘Zachariah Gompert <zach.gompert@usu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zachariah",
                    family = "Gompert",
                    role = c("aut", "cre"),
                    email = "zach.gompert@usu.edu")
as necessary.
checkRd: (-1) estprops.Rd:40: Escaped LaTeX specials: \&
Maintainer: ‘Waley W. J. Liang <wliang10@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Waley", "W.", "J."),
                    family = "Liang",
                    role = c("aut", "cre"),
                    email = "wliang10@gmail.com")
as necessary.
Maintainer: ‘Andrew Tamalunas <atamalu@g.clemson.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Tamalunas",
                    role = c("aut", "cre"),
                    email = "atamalu@g.clemson.edu")
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuwen",
                      family = "Gu",
                      role = "aut",
                      email = "yuwen.gu@uconn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Maintainer: ‘Olivier Blarquez <blarquez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Global", "Paleofire", "Working"),
                      family = "Group",
                      role = "aut",
                      email = "paleofire@univ-fcomte.fr"),
               person(given = "Olivier",
                      family = "Blarquez",
                      role = "cre",
                      email = "blarquez@gmail.com"))
as necessary.
Maintainer: ‘Hanjie Shen <shenhanjie0418@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanjie",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "shenhanjie0418@gmail.com"),
               person(given = "Ruben",
                      family = "Carmona",
                      role = "aut",
                      email = "ruben.carmona13@gmail.com"),
               person(given = "Loren",
                      family = "Mell",
                      role = "aut",
                      email = "lmell@ucsd.edu"))
as necessary.
Found the following HTML validation problems:
gchart_available_areas.html:53:1 (gchart_available_areas.Rd:15): Warning: missing </ul> before </div>
gchart_cache_dir.html:48:1 (gchart_cache_dir.Rd:12): Warning: missing </ul> before </div>
gchart_remove_cache_path.html:52:1 (gchart_remove_cache_path.Rd:12): Warning: missing </ul> before </div>
path_existing_root.html:46:1 (path_existing_root.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
gcite_wordcloud.html:64:1 (gcite_wordcloud.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Zifei Han <hanzifei1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zifei",
                    family = "Han",
                    role = c("aut", "cre"),
                    email = "hanzifei1@gmail.com")
as necessary.
Maintainer: ‘Gherardo Varando <gherardo.varando@gmail.com>’

The Description field contains
  minimization problem.  Varando G, Hansen NR (2020) <arXiv:2005.10483>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) listInverseBlocks.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                           ^
checkRd: (-1) listInverseBlocks.Rd:17: Lost braces; missing escapes or markup?
    17 | List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                    ^
Maintainer: ‘Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugo",
                    family = "Gasca-Aragon",
                    role = c("aut", "cre"),
                    email = "hugo_gasca_aragon@hotmail.com")
as necessary.
checkRd: (-1) gconsensus.Rd:48-54: Lost braces
    48 | {\code{display.signif.digits} an integer representing the number of significant digits to be obtained in the adaptative approach of the Monte Carlo simulation,
       | ^
Found the following HTML validation problems:
e2_Monte_Carlo_EM.html:116:1 (e2_Monte_Carlo_EM.Rd:54): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print_df.html:55:1 (print_df.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Kevin Jakob <Kevin.Jakob.Research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Jakob",
                    role = c("aut", "cre"),
                    email = "kevin.jakob.research@gmail.com")
as necessary.
Found the following HTML validation problems:
export-methods.html:64:1 (export-methods.Rd:32): Warning: missing </ul> before </div>
plot-methods.html:58:1 (plot-methods.Rd:21): Warning: missing </ul> before </div>
checkRd: (-1) GCTF.Rd:56: Lost braces; missing escapes or markup?
    56 |   U : A matrix which has N-rows and J-columns (J < {N, M}).
       |                                                    ^
checkRd: (-1) GCTF.Rd:57: Lost braces; missing escapes or markup?
    57 |   V : A matrix which has M-rows and J-columns (J < {N, M}).
       |                                                    ^
checkRd: (-1) GCTF.Rd:58: Lost braces; missing escapes or markup?
    58 |   J : The number of dimension (J < {N, M}).
       |                                    ^
Maintainer: ‘Antony Unwin<unwin@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antony",
                    family = "Unwin",
                    role = c("aut", "cre"),
                    email = "unwin@math.uni-augsburg.de")
as necessary.
Maintainer: ‘Joshua O'Brien <joshmobrien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "O'Brien",
                    role = c("aut", "cre"),
                    email = "joshmobrien@gmail.com")
as necessary.
checkRd: (-1) nearblack.Rd:30: Lost braces
    30 | code{infile=}, indicating that the input file should be
       |     ^
Maintainer: ‘David Brahm <brahm@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Brahm",
                    role = c("aut", "cre"),
                    email = "brahm@alum.mit.edu")
as necessary.
Found the following calls to attach():
File ‘g.data/R/g.data.attach.R’:
  attach(NULL, pos, basename(dir))
See section ‘Good practice’ in ‘?attach’.
Found the following HTML validation problems:
deprecated.html:73:1 (deprecated.Rd:55): Warning: missing </ul> before </div>
translate.logit.html:46:1 (translate.logit.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
shinyAppServer.html:54:1 (shinyAppServer.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Alex Hayes <alexpghayes@gmail.com>’

The Description field contains
  see Chen et al. (2021) <arXiv:2108.03336> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Transition-slots.html:50:1 (Transition-slots.Rd:31): Warning: missing </ul> before </div>
Maintainer: ‘Ezequiel Smucler <ezequiels.90@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Peña",
                      role = "aut",
                      email = "daniel.pena@uc3m.es"),
               person(given = "Ezequiel",
                      family = "Smucler",
                      role = c("aut", "cre"),
                      email = "ezequiels.90@gmail.com"),
               person(given = "Victor",
                      family = "Yohai",
                      role = "aut",
                      email = "vyohai@dm.uba.ar"))
as necessary.
Found the following HTML validation problems:
v2m.html:55:1 (v2m.Rd:13): Warning: missing </ul> before </div>
checkRd: (-1) GDSARM.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDSARM.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) GDS_givencols.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDS_givencols.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) dantzig.delta.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dantzigS.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dataCompoundExt.Rd:6: Lost braces
     6 | \title{Compound Extraction experiment of Dopico-Garc{\' i}a et al. (2007)}
       |                                                     ^
checkRd: (-1) dataCompoundExt.Rd:35: Lost braces
    35 | An analytical experiment conducted by Dopico-Garc{\' i}a et al. (2007) to
       |                                                  ^
checkRd: (-1) dataCompoundExt.Rd:22: Lost braces
    22 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
Maintainer: ‘Partha Sarathi Bishnu <psbishnu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Partha", "Sarathi"),
                    family = "Bishnu",
                    role = c("aut", "cre"),
                    email = "psbishnu@gmail.com")
as necessary.
Found the following HTML validation problems:
raw2gdx.html:55:1 (raw2gdx.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Maintainer: ‘Junghi Kim <junghikim0@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junghi",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "junghikim0@gmail.com"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
emes.html:85:1 (emes.Rd:24): Warning: missing </ul> before </div>
es.html:93:1 (es.Rd:29): Warning: missing </ul> before </div>
geebt.html:75:1 (geebt.Rd:20): Warning: missing </ul> before </div>
geega.html:65:1 (geega.Rd:16): Warning: missing </ul> before </div>
initial_Lambda.html:76:1 (initial_Lambda.Rd:22): Warning: missing </ul> before </div>
print.geecure.html:50:1 (print.geecure.Rd:11): Warning: missing </ul> before </div>
print.geecure2.html:50:1 (print.geecure2.Rd:11): Warning: missing </ul> before </div>
varest.html:117:1 (varest.Rd:39): Warning: missing </ul> before </div>
varest2.html:86:1 (varest2.Rd:26): Warning: missing </ul> before </div>
Found the following HTML validation problems:
clean_drive_folders_by_name.html:64:1 (clean_drive_folders_by_name.Rd:22): Warning: missing </ul> before </div>
compile_db.html:66:1 (compile_db.Rd:20): Warning: missing </ul> before </div>
gee_message.html:48:1 (gee_message.Rd:11): Warning: missing </ul> before </div>
output_message.html:51:1 (output_message.Rd:13): Warning: missing </ul> before </div>
print_version.html:47:1 (print_version.Rd:11): Warning: missing </ul> before </div>
process_single_file.html:54:1 (process_single_file.Rd:14): Warning: missing </ul> before </div>
process_source_files.html:51:1 (process_source_files.Rd:13): Warning: missing </ul> before </div>
remove_tables.html:48:1 (remove_tables.Rd:11): Warning: missing </ul> before </div>
set_depend.html:63:1 (set_depend.Rd:20): Warning: missing </ul> before </div>
set_dirs.html:48:1 (set_dirs.Rd:11): Warning: missing </ul> before </div>
write_grid.html:47:1 (write_grid.Rd:11): Warning: missing </ul> before </div>
write_grid_stats.html:68:1 (write_grid_stats.Rd:24): Warning: missing </ul> before </div>
write_log_file.html:48:1 (write_log_file.Rd:11): Warning: missing </ul> before </div>
write_state_file.html:59:1 (write_state_file.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Lee McDaniel <lmcda4@lsuhsc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zheng Li <zheng.li@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Wang",
                      role = "aut",
                      email = "mwang@phs.psu.edu"),
               person(given = "Zheng",
                      family = "Li",
                      role = "cre",
                      email = "zheng.li@outlook.com"))
as necessary.
checkRd: (-1) dental.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:18: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
compute_pairwise_sum_of_list.html:61:1 (compute_pairwise_sum_of_list.Rd:19): Warning: missing </ul> before </div>
compute_sum_of_list.html:50:1 (compute_sum_of_list.Rd:12): Warning: missing </ul> before </div>
grab_GFUN-methods.html:52:1 (grab_GFUN-methods.Rd:19): Warning: missing </ul> before </div>
grab_estFUN-methods.html:49:1 (grab_estFUN-methods.Rd:15): Warning: missing </ul> before </div>
grab_psiFUN_list-methods.html:52:1 (grab_psiFUN_list-methods.Rd:19): Warning: missing </ul> before </div>
show-methods.html:58:1 (show-methods.Rd:27): Warning: missing </ul> before </div>
weights-methods.html:50:1 (weights-methods.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Luke Harmon <lukeh@uidaho.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Harmon",
                      role = c("aut", "cre"),
                      email = "lukeh@uidaho.edu"),
               person(given = "Matthew",
                      family = "Pennell",
                      role = "aut"),
               person(given = "Chad",
                      family = "Brock",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Brown",
                      role = "aut"),
               person(given = "Wendell",
                      family = "Challenger",
                      role = "aut"),
               person(given = "Jon",
                      family = "Eastman",
                      role = "aut"),
               person(given = "Rich",
                      family = "FitzJohn",
                      role = "aut"),
               person(given = "Rich",
                      family = "Glor",
                      role = "aut"),
               person(given = "Gene",
                      family = "Hunt",
                      role = "aut"),
               person(given = "Liam",
                      family = "Revell",
                      role = "aut"),
               person(given = "Graham",
                      family = "Slater",
                      role = "aut"),
               person(given = "Josef",
                      family = "Uyeda",
                      role = "aut"),
               person(given = "Jason",
                      family = "Weir",
                      role = "aut"),
               person(given = "CRAN",
                      family = "team",
                      role = "aut",
                      comment = "corrections in 2022"))
as necessary.
Maintainer: ‘Xiaoyan Wang <xywang@hnu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "xywang@hnu.edu.cn"),
               person(given = "Hongduo",
                      family = "Liu",
                      role = "aut"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael Friendly <friendly@yorku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georges",
                      family = "Monette",
                      role = "aut"),
               person(given = "Michael",
                      family = "Friendly",
                      role = c("aut", "cre"),
                      email = "friendly@yorku.ca"))
as necessary.
Maintainer: ‘Artem Sokolov <artem.sokolov@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Artem",
                    family = "Sokolov",
                    role = c("aut", "cre"),
                    email = "artem.sokolov@gmail.com")
as necessary.
checkRd: (-1) gelnet.logreg.obj.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{y}{n-by-1 binary response vector sampled from {0,1}}
       |                                                     ^
Found the following HTML validation problems:
MphCalcLogL.html:62:1 (MphCalcLogL.Rd:18): Warning: missing </ul> before </div>
calc_sigma.html:70:1 (calc_sigma.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Luisa Salazar Vizcaya <luisapaola.salazarvizcaya@insel.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luisa", "Salazar"),
                      family = "Vizcaya",
                      role = c("aut", "cre"),
                      email = "luisapaola.salazarvizcaya@insel.ch"),
               person(given = "Nello",
                      family = "Blaser",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Gsponer",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Seongho Kim <biostatistician.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seongho",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "biostatistician.kim@gmail.com")
as necessary.
Maintainer: ‘Michel Ballings <Michel.Ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Egon",
                      family = "Willighagen",
                      role = "aut"),
               person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"))
as necessary.
Found the following HTML validation problems:
dot-createPatternFile.html:50:1 (dot-createPatternFile.Rd:12): Warning: missing </ul> before </div>
dot-generateColors.html:54:1 (dot-generateColors.Rd:14): Warning: missing </ul> before </div>
dot-getBarcodeFilter.html:46:1 (dot-getBarcodeFilter.Rd:10): Warning: missing </ul> before </div>
dot-getMinDist.html:56:1 (dot-getMinDist.Rd:16): Warning: missing </ul> before </div>
dot-getWobblePos.html:46:1 (dot-getWobblePos.Rd:10): Warning: missing </ul> before </div>
dot-revComp.html:46:1 (dot-revComp.Rd:10): Warning: missing </ul> before </div>
dot-revComp_EqLength.html:50:1 (dot-revComp_EqLength.Rd:12): Warning: missing </ul> before </div>
dot-revComp_UneqLength.html:46:1 (dot-revComp_UneqLength.Rd:10): Warning: missing </ul> before </div>
dot-testDirIdentifier.html:46:1 (dot-testDirIdentifier.Rd:10): Warning: missing </ul> before </div>
genBaRcode_app.html:47:1 (genBaRcode_app.Rd:11): Warning: missing </ul> before </div>
plotClusterTree.html:70:1 (plotClusterTree.Rd:26): Warning: missing </ul> before </div>
Maintainer: ‘Horst Lewitschnig <Horst.Lewitschnig@infineon.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Horst",
                      family = "Lewitschnig",
                      role = c("aut", "cre"),
                      email = "horst.lewitschnig@infineon.com"),
               person(given = "David",
                      family = "Lenzi",
                      role = "aut"))
as necessary.
Maintainer: ‘Helgem de Souza Ribeiro Martins <helgem.souza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Helgem", "de", "Souza", "Ribeiro"),
                      family = "Martins",
                      role = c("aut", "cre"),
                      email = "helgem.souza@gmail.com"),
               person(given = c("Anderson", "Ribeiro"),
                      family = "Duarte",
                      role = "aut"))
as necessary.
Maintainer: ‘Francis Huang <flh3@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francis",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "flh3@hotmail.com")
as necessary.
Maintainer: ‘Lincoln Mullen <lincoln@lincolnmullen.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Shaiful Anuar Abu Bakar <saab@um.edu.my>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Shaiful", "Anuar", "Abu"),
                    family = "Bakar",
                    role = c("aut", "cre"),
                    email = "saab@um.edu.my")
as necessary.
Found the following HTML validation problems:
constrain.html:54:1 (constrain.Rd:14): Warning: missing </ul> before </div>
expand.html:50:1 (expand.Rd:12): Warning: missing </ul> before </div>
getfreqs.html:50:1 (getfreqs.Rd:12): Warning: missing </ul> before </div>
grapes-bq-grapes.html:50:1 (grapes-bq-grapes.Rd:12): Warning: missing </ul> before </div>
grapes-bt-grapes.html:52:1 (grapes-bt-grapes.Rd:12): Warning: missing </ul> before </div>
hanning.window.html:46:1 (hanning.window.Rd:10): Warning: missing </ul> before </div>
print.stft.html:51:1 (print.stft.Rd:12): Warning: missing </ul> before </div>
pseudolines.html:59:1 (pseudolines.Rd:16): Warning: missing </ul> before </div>
removeZero.html:46:1 (removeZero.Rd:10): Warning: missing </ul> before </div>
seq.log.html:63:1 (seq.log.Rd:18): Warning: missing </ul> before </div>
shift.html:58:1 (shift.Rd:16): Warning: missing </ul> before </div>
stftcalc.html:106:1 (stftcalc.Rd:48): Warning: missing </ul> before </div>
subs.html:55:1 (subs.Rd:14): Warning: missing </ul> before </div>
uniform.window.html:46:1 (uniform.window.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) GeneF-internal.Rd:40: Lost braces; missing escapes or markup?
    40 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.pvalue.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
Running examples in ‘geneHapR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LDheatmap
> ### Title: This function produces a pairwise LD plot.
> ### Aliases: LDheatmap plot_LDheatmap
> 
> ### ** Examples
> 
> # Pass LDheatmap a SnpMatrix object
> data(geneHapR_test)
> plot_LDheatmap(hap = hapResult,
+                gff = gff,
+                Chr = hapResult[1,2],
+                start = 4000, end = 8200)
Warning in LDheatmap(gdat, gff = gff, Chr = Chr, start = start, end = end,  :
  Only bi-alleles supported,Variables with less or more than 2 allels will be omitted.
Loading required namespace: GenomeInfoDb
Failed with error:  ‘there is no package called ‘GenomeInfoDb’’
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'i' in selecting a method for function '[': unable to load required package ‘GenomeInfoDb’
Calls: plot_LDheatmap ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Found the following HTML validation problems:
sites_compar.html:73:1 (sites_compar.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Venkatraman E. Seshan <seshanv@mskcc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Venkatraman", "E."),
                    family = "Seshan",
                    role = c("aut", "cre"),
                    email = "seshanv@mskcc.org")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:192:1 (inst/NEWS.Rd:77): Warning: missing </ul> before </div>
NEWS.html:102:1 (inst/NEWS.Rd:41): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:117:1 (inst/NEWS.Rd:48): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:137:1 (inst/NEWS.Rd:56): Warning: <h4> anchor "CORRECTED-BUGS" already defined
NEWS.html:155:1 (inst/NEWS.Rd:64): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:172:1 (inst/NEWS.Rd:71): Warning: <h4> anchor "CORRECTED-BUGS" already defined
Found the following HTML validation problems:
genepop-utils.html:48:1 (genepop-utils.Rd:14): Warning: missing </ul> before </div>
setMantelSeed.html:46:1 (setMantelSeed.Rd:10): Warning: missing </ul> before </div>
setRandomSeed.html:46:1 (setRandomSeed.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘H. D. Vinod <vinod@fordham.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Prof.", "H.", "D."),
                      family = "Vinod",
                      role = "aut"),
               person(given = "Fordham",
                      family = "University",
                      role = "aut"),
               person(family = "NY.",
                      role = "aut"),
               person(given = c("H.", "D."),
                      family = "Vinod",
                      role = "cre",
                      email = "vinod@fordham.edu"))
as necessary.
Maintainer: ‘Jonas Peters <jonas.peters@math.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonas",
                      family = "Peters",
                      role = c("aut", "cre"),
                      email = "jonas.peters@math.ku.dk"),
               person(given = c("Rajen", "D."),
                      family = "Shah",
                      role = "aut"))
as necessary.
Maintainer: ‘Aurelien Nicosia <nicosia.aurelien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aurelien",
                      family = "Nicosia",
                      role = c("aut", "cre"),
                      email = "nicosia.aurelien@gmail.com"),
               person(given = "Simon",
                      family = "Baillargeon-Ladouceur",
                      role = "aut"))
as necessary.
Maintainer: ‘Max Welz <welz@ese.eur.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  and Fernández-Val (2020) <arXiv:1712.04802>. This package's workhorse
  <arXiv:1712.04802> for a suite of user-specified machine learners. All
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following significant warnings:
  Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geneSLOPE.Rcheck/00install.out’ for details.
Found the following HTML validation problems:
identify_clump.clumpingResult.html:51:1 (identify_clump.clumpingResult.Rd:12): Warning: missing </ul> before </div>
identify_clump.selectionResult.html:51:1 (identify_clump.selectionResult.Rd:12): Warning: missing </ul> before </div>
plot.clumpingResult.html:59:1 (plot.clumpingResult.Rd:16): Warning: missing </ul> before </div>
plot.selectionResult.html:59:1 (plot.selectionResult.Rd:16): Warning: missing </ul> before </div>
print.clumpingResult.html:51:1 (print.clumpingResult.Rd:12): Warning: missing </ul> before </div>
print.phenotypeData.html:51:1 (print.phenotypeData.Rd:12): Warning: missing </ul> before </div>
print.screeningResult.html:51:1 (print.screeningResult.Rd:12): Warning: missing </ul> before </div>
summary.clumpingResult.html:51:1 (summary.clumpingResult.Rd:12): Warning: missing </ul> before </div>
summary.phenotypeData.html:51:1 (summary.phenotypeData.Rd:12): Warning: missing </ul> before </div>
summary.screeningResult.html:51:1 (summary.screeningResult.Rd:12): Warning: missing </ul> before </div>
summary.selectionResult.html:55:1 (summary.selectionResult.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) cpm.Rd:70: Lost braces; missing escapes or markup?
    70 | covariates included in \code{formula_l} or {formula_s} (required).}
       |                                            ^
Found the following HTML validation problems:
app_msg_functions.html:98:1 (app_msg_functions.Rd:61): Warning: missing </ul> before </div>
app_output_utilities.html:89:1 (app_output_utilities.Rd:46): Warning: missing </ul> before </div>
app_panels.html:63:1 (app_panels.Rd:26): Warning: missing </ul> before </div>
app_ui_utilities.html:79:1 (app_ui_utilities.Rd:52): Warning: missing </ul> before </div>
app_utilities.html:120:1 (app_utilities.Rd:72): Warning: missing </ul> before </div>
cpmCPCellPlot.html:63:1 (cpmCPCellPlot.Rd:18): Warning: missing </ul> before </div>
model_utility_functions.html:58:1 (model_utility_functions.Rd:25): Warning: missing </ul> before </div>
plot.splitFull.html:75:1 (plot.splitFull.Rd:25): Warning: missing </ul> before </div>
plot.splitSummary.html:79:1 (plot.splitSummary.Rd:24): Warning: missing </ul> before </div>
print.cpm.html:51:1 (print.cpm.Rd:12): Warning: missing </ul> before </div>
print.pkm.html:51:1 (print.pkm.Rd:12): Warning: missing </ul> before </div>
simpleMplot.html:60:1 (simpleMplot.Rd:16): Warning: missing </ul> before </div>
summary.estM.html:55:1 (summary.estM.Rd:14): Warning: missing </ul> before </div>
update_input.html:68:1 (update_input.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-fetch_csv_page.html:68:1 (dot-fetch_csv_page.Rd:24): Warning: missing </ul> before </div>
dot-onLoad.html:50:1 (dot-onLoad.Rd:12): Warning: missing </ul> before </div>
filter_DOI.html:50:1 (filter_DOI.Rd:12): Warning: missing </ul> before </div>
filter_GENUS.html:50:1 (filter_GENUS.Rd:12): Warning: missing </ul> before </div>
filter_INSTCODE.html:50:1 (filter_INSTCODE.Rd:12): Warning: missing </ul> before </div>
filter_ORIGCTY.html:50:1 (filter_ORIGCTY.Rd:12): Warning: missing </ul> before </div>
filter_SAMPSTAT.html:50:1 (filter_SAMPSTAT.Rd:12): Warning: missing </ul> before </div>
filter_SPECIES.html:50:1 (filter_SPECIES.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘crossover.R’ ‘initialize_population.R’ ‘mutation.R’
Maintainer: ‘Gregory Warnes <greg@warnes.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Warnes",
                      role = c("aut", "cre"),
                      email = "greg@warnes.net"),
               person(given = c("with", "contributions", "from", "Gregor"),
                      family = "Gorjanc",
                      role = "aut"),
               person(given = "Friedrich",
                      family = "Leisch",
                      role = "aut"),
               person(given = "Michael",
                      family = "Man.",
                      role = "aut"))
as necessary.
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:86-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:48-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:59-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:78-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:93-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Ryan C. Graebner <ryan.graebner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Graebner",
                      role = c("aut", "cre"),
                      email = "ryan.graebner@gmail.com"),
               person(given = "Alfonso",
                      family = "Cuesta-Marcos",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
print.gravity.html:51:1 (print.gravity.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Marek Gagolewski <marek@gagolewski.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
print.genius_album.html:51:1 (print.genius_album.Rd:12): Warning: missing </ul> before </div>
print.genius_annotation.html:51:1 (print.genius_annotation.Rd:12): Warning: missing </ul> before </div>
print.genius_artist.html:51:1 (print.genius_artist.Rd:12): Warning: missing </ul> before </div>
print.genius_referent.html:51:1 (print.genius_referent.Rd:12): Warning: missing </ul> before </div>
print.genius_resource.html:51:1 (print.genius_resource.Rd:12): Warning: missing </ul> before </div>
print.genius_song.html:51:1 (print.genius_song.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Yaoyong Li<liyaoyong85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yaoyong",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "liyaoyong85@gmail.com")
as necessary.
Maintainer: ‘Torben Tvedebrink <tvede@math.aau.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Torben",
                    family = "Tvedebrink",
                    role = c("aut", "cre"),
                    email = "tvede@math.aau.dk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
app_genogeo.html:51:1 (app_genogeo.Rd:13): Warning: missing </ul> before </div>
bar_colour.html:50:1 (bar_colour.Rd:12): Warning: missing </ul> before </div>
profile_AA_x0.html:59:1 (profile_AA_x0.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Fischer <daniel.fischer@luke.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Fischer",
                    role = c("aut", "cre"),
                    email = "daniel.fischer@luke.fi")
as necessary.
Maintainer: ‘Lionel Guy <lionel.guy@imbim.uu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lionel",
                    family = "Guy",
                    role = c("aut", "cre"),
                    email = "lionel.guy@imbim.uu.se")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) barto.Rd:15-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:19-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:23-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:19-20: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Zihuai He <zihuai@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@stanford.edu")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
'library' or 'require' call not declared from: ‘gridExtra’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.precision.Rd’ ‘ridge.R’
Maintainer: ‘Sylvain Gubian <DL.RSupport@pmi.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sylvain",
                      family = "Gubian",
                      role = c("aut", "cre"),
                      email = "dl.rsupport@pmi.com"),
               person(given = "Yang",
                      family = "Xiang",
                      role = "aut"),
               person(given = "Brian",
                      family = "Suomela",
                      role = "aut"),
               person(given = "Julia",
                      family = "Hoeng",
                      role = "aut"),
               person(given = "PMP",
                      family = "SA.",
                      role = "aut"))
as necessary.
File ‘GenSA/libs/GenSA.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Shiqing Yu <syu.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shiqing",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "syu.phd@gmail.com"),
               person(given = "Lina",
                      family = "Lin",
                      role = "aut"),
               person(given = "Wally",
                      family = "Gilks",
                      role = "aut"))
as necessary.
Maintainer: ‘John P Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "P"),
                    family = "Nolan",
                    role = c("aut", "cre"),
                    email = "jpnolan@american.edu")
as necessary.
checkRd: (-1) cfunc.new.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:58-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:60-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:65: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jixiang Wu <jixiang.wu@sdstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jixiang",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "jixiang.wu@sdstate.edu")
as necessary.
Maintainer: ‘Artur Araujo <artur.stat@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The BugReports field in DESCRIPTION has
  https://github.com/GjjvdBurg/RGenSVM
which should likely be
  https://github.com/GjjvdBurg/RGenSVM/issues
instead.
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                ^
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                            ^
Maintainer: ‘Carlos Biagolini-Jr.<c.biagolini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Biagolini-Jr.",
                    role = c("aut", "cre"),
                    email = "c.biagolini@gmail.com")
as necessary.
Maintainer: ‘Timothy M. Beissinger <timbeissinger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Timothy", "M."),
                    family = "Beissinger",
                    role = c("aut", "cre"),
                    email = "timbeissinger@gmail.com")
as necessary.
'::' or ':::' import not declared from: ‘geoR’
'library' or 'require' call not declared from: ‘geoR’
Found the following HTML validation problems:
download_gpkg.html:62:1 (download_gpkg.Rd:22): Warning: missing </ul> before </div>
load_gpkg.html:46:1 (load_gpkg.Rd:10): Warning: missing </ul> before </div>
select_data_type.html:50:1 (select_data_type.Rd:12): Warning: missing </ul> before </div>
select_year_input.html:50:1 (select_year_input.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.cate.html:94:1 (plot.cate.Rd:41): Warning: missing </ul> before </div>
plot.distlist.html:75:1 (plot.distlist.Rd:28): Warning: missing </ul> before </div>
plot.est.html:59:1 (plot.est.Rd:16): Warning: missing </ul> before </div>
plot.hyperframe.html:97:1 (plot.hyperframe.Rd:42): Warning: missing </ul> before </div>
plot.im.html:84:1 (plot.im.Rd:33): Warning: missing </ul> before </div>
plot.imlist.html:99:1 (plot.imlist.Rd:42): Warning: missing </ul> before </div>
plot.list.html:106:1 (plot.list.Rd:47): Warning: missing </ul> before </div>
plot.obs.html:68:1 (plot.obs.Rd:21): Warning: missing </ul> before </div>
plot.ppplist.html:65:1 (plot.ppplist.Rd:20): Warning: missing </ul> before </div>
plot.weights.html:62:1 (plot.weights.Rd:19): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_geometry.Rd’ ‘add_level.Rd’ ‘common.R’
    ‘complete_point_geometry.Rd’ ‘complete_relation_by_geography.Rd’
    ‘coordinates_to_geometry.Rd’ ‘explotation.R’ ‘geodimension.R’
    ‘geolevel.R’ ‘get_empty_geometry_instances.Rd’
    ‘get_higher_level_names.Rd’ ‘get_level_data.Rd’
    ‘get_level_data_geo.Rd’ ‘get_level_geometries.Rd’
    ‘get_level_layer.Rd’ ‘get_level_names.Rd’
    ‘get_unrelated_instances.Rd’ ‘relate_levels.Rd’ ‘relations.R’
    ‘select_levels.Rd’ ‘set_level_data.Rd’ ‘transform_crs.Rd’
Maintainer: ‘Annie C. Smith <annie.smith@dnr.wa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Annie", "C."),
                      family = "Smith",
                      role = c("aut", "cre"),
                      email = "annie.smith@dnr.wa.gov"),
               person(given = "Phoebe",
                      family = "Zarnetske",
                      role = "aut"),
               person(given = "Kyla",
                      family = "Dahlin",
                      role = "aut"),
               person(given = "Adam",
                      family = "Wilson",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Latimer",
                      role = "aut"))
as necessary.
Maintainer: ‘Ha-Young Shin <hayoung.shin@gmail.com>’

The Description field contains
  Oh, H.-S. (2020) <arXiv:2007.04518>. Also see Fletcher, P. T. (2013)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) calvaria.Rd:8: Lost braces; missing escapes or markup?
     8 | A named list containing \code{x} {a vector containing the ages}
       |                                  ^
checkRd: (-1) calvaria.Rd:9: Lost braces; missing escapes or markup?
     9 |   \code{y} {a matrix where each column is a preshape.} The 23rd, 101st,
       |            ^
Maintainer: ‘Anja Kleebaum <kleebaum@informatik.uni-heidelberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anja",
                    family = "Kleebaum",
                    role = c("aut", "cre"),
                    email = "kleebaum@informatik.uni-heidelberg.de")
as necessary.
Found the following HTML validation problems:
myColorRamp.html:61:1 (myColorRamp.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
attach_spdf.html:50:1 (attach_spdf.Rd:12): Warning: missing </ul> before </div>
get_geofacet_grob.html:46:1 (get_geofacet_grob.Rd:10): Warning: missing </ul> before </div>
plot.facet_geo.html:51:1 (plot.facet_geo.Rd:12): Warning: missing </ul> before </div>
print.facet_geo.html:59:1 (print.facet_geo.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Fusion.html:100:1 (Fusion.Rd:82): Warning: <h5> anchor "Usage" already defined
Fusion.html:116:1 (Fusion.Rd:92): Warning: <h5> anchor "Usage" already defined
FusionLabel.html:105:1 (FusionLabel.Rd:54): Warning: missing </ul> before </div>
NewAggregFunction.html:46:1 (NewAggregFunction.Rd:10): Warning: missing </ul> before </div>
Zoning.html:152:1 (Zoning.Rd:103): Warning: <h5> anchor "Usage" already defined
Zoning.html:175:1 (Zoning.Rd:116): Warning: <h5> anchor "Usage" already defined
Zoning.html:191:1 (Zoning.Rd:126): Warning: <h5> anchor "Usage" already defined
Zoning.html:197:1 (Zoning.Rd:130): Warning: <h5> anchor "Returns" already defined
Zoning.html:214:1 (Zoning.Rd:139): Warning: <h5> anchor "Usage" already defined
Zoning.html:230:1 (Zoning.Rd:149): Warning: <h5> anchor "Usage" already defined
Zoning.html:236:1 (Zoning.Rd:153): Warning: <h5> anchor "Returns" already defined
Zoning.html:253:1 (Zoning.Rd:162): Warning: <h5> anchor "Usage" already defined
Zoning.html:269:1 (Zoning.Rd:172): Warning: <h5> anchor "Usage" already defined
Zoning.html:275:1 (Zoning.Rd:176): Warning: <h5> anchor "Returns" already defined
Zoning.html:292:1 (Zoning.Rd:185): Warning: <h5> anchor "Usage" already defined
Zoning.html:298:1 (Zoning.Rd:189): Warning: <h5> anchor "Arguments" already defined
Zoning.html:311:1 (Zoning.Rd:196): Warning: <h5> anchor "Returns" already defined
Zoning.html:328:1 (Zoning.Rd:205): Warning: <h5> anchor "Usage" already defined
Zoning.html:334:1 (Zoning.Rd:209): Warning: <h5> anchor "Arguments" already defined
Zoning.html:347:1 (Zoning.Rd:216): Warning: <h5> anchor "Returns" already defined
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geoFKF.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
logLikMultiNorm.html:56:1 (logLikMultiNorm.Rd:15): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/geoFourierFDA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acs_5yr_geo.R’ ‘acs_5yr_rolap.R’ ‘acs_5yr_topic.R’
    ‘anrc_2021_x01.Rd’ ‘as_GeoPackage.Rd’ ‘as_acs_5yr_geo.Rd’
    ‘as_acs_5yr_topic.Rd’ ‘as_flat_table.Rd’ ‘as_geomultistar.Rd’
    ‘as_star_database.Rd’ ‘download_selected_files.Rd’
    ‘get_area_file_names.Rd’ ‘get_area_groups.Rd’ ‘get_area_years.Rd’
    ‘get_areas.Rd’ ‘get_available_area_topics.Rd’
    ‘get_available_area_years.Rd’ ‘get_available_areas.Rd’
    ‘get_code_from_area_name.Rd’ ‘get_geo_attribute_names.Rd’
    ‘get_geo_layer.Rd’ ‘get_metadata.Rd’ ‘get_name_from_area_code.Rd’
    ‘get_names_of_other_topics.Rd’ ‘get_report_names.Rd’
    ‘get_selected_file_names.Rd’ ‘get_subreport_names.Rd’
    ‘get_too_heavy_file_names.Rd’ ‘get_topic_name.Rd’
    ‘select_area_files.Rd’ ‘select_report.Rd’ ‘select_subreport.Rd’
    ‘select_topic.Rd’ ‘set_metadata.Rd’ ‘unzip_files.Rd’
Found the following HTML validation problems:
calculate_cell_size.html:80:1 (calculate_cell_size.Rd:33): Warning: missing </ul> before </div>
get_shape_details.html:49:1 (get_shape_details.Rd:11): Warning: missing </ul> before </div>
get_shape_details_internal.html:49:1 (get_shape_details_internal.Rd:11): Warning: missing </ul> before </div>
hungarian_cc.html:46:1 (hungarian_cc.Rd:10): Warning: missing </ul> before </div>
hungariansafe_cc.html:46:1 (hungariansafe_cc.Rd:10): Warning: missing </ul> before </div>
plot.geogrid.html:55:1 (plot.geogrid.Rd:14): Warning: missing </ul> before </div>
read_polygons.html:49:1 (read_polygons.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
TO_GeoJson.html:69:1 (TO_GeoJson.Rd:226): Warning: <h3> anchor "Methods" already defined
TO_GeoJson.html:135:1 (TO_GeoJson.Rd:255): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:164:1 (TO_GeoJson.Rd:273): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:170:1 (TO_GeoJson.Rd:277): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:193:1 (TO_GeoJson.Rd:291): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:199:1 (TO_GeoJson.Rd:295): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:222:1 (TO_GeoJson.Rd:309): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:228:1 (TO_GeoJson.Rd:313): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:251:1 (TO_GeoJson.Rd:327): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:257:1 (TO_GeoJson.Rd:331): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:280:1 (TO_GeoJson.Rd:345): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:286:1 (TO_GeoJson.Rd:349): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:309:1 (TO_GeoJson.Rd:363): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:315:1 (TO_GeoJson.Rd:367): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:338:1 (TO_GeoJson.Rd:381): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:344:1 (TO_GeoJson.Rd:385): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:367:1 (TO_GeoJson.Rd:399): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:373:1 (TO_GeoJson.Rd:403): Warning: <h5> anchor "Arguments" already defined
TO_GeoJson.html:398:1 (TO_GeoJson.Rd:418): Warning: <h5> anchor "Usage" already defined
TO_GeoJson.html:404:1 (TO_GeoJson.Rd:422): Warning: <h5> anchor "Arguments" already defined
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
getPathRegion.html:50:1 (getPathRegion.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Karsten Donnay <kdonnay@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karsten",
                      family = "Donnay",
                      role = c("aut", "cre"),
                      email = "kdonnay@gmx.net"),
               person(given = c("Andrew", "M."),
                      family = "Linke",
                      role = "aut"))
as necessary.
File ‘geometries/libs/geometries.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
feasible.point.html:58:1 (feasible.point.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
geomongo.html:82:1 (geomongo.Rd:99): Warning: <h3> anchor "Methods" already defined
geomongo.html:158:1 (geomongo.Rd:142): Warning: <h5> anchor "Usage" already defined
geomongo.html:172:1 (geomongo.Rd:151): Warning: <h5> anchor "Usage" already defined
geomongo.html:178:1 (geomongo.Rd:155): Warning: <h5> anchor "Arguments" already defined
geomongo.html:201:1 (geomongo.Rd:169): Warning: <h5> anchor "Usage" already defined
geomongo.html:213:1 (geomongo.Rd:179): Warning: <h5> anchor "Arguments" already defined
geomongo.html:242:1 (geomongo.Rd:199): Warning: <h5> anchor "Usage" already defined
geomongo.html:255:1 (geomongo.Rd:210): Warning: <h5> anchor "Arguments" already defined
geomongo.html:288:1 (geomongo.Rd:233): Warning: <h5> anchor "Usage" already defined
geomongo.html:294:1 (geomongo.Rd:237): Warning: <h5> anchor "Arguments" already defined
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_dimension.Rd’ ‘add_facts.Rd’ ‘define_geoattribute.Rd’
    ‘dimensional_query_run_geoquery.R’ ‘filter_dimension.Rd’
    ‘geomultistar_define_geoattribute.R’ ‘get_empty_geoinstances.Rd’
    ‘multistar_as_flat_table.Rd’ ‘relate_dimension.Rd’ ‘run_geoquery.Rd’
    ‘run_query.Rd’ ‘save_as_geopackage.Rd’ ‘select_dimension.Rd’
    ‘select_fact.Rd’
Maintainer: ‘Barry Rowlingson <b.rowlingson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Barry",
                    family = "Rowlingson",
                    role = c("aut", "cre"),
                    email = "b.rowlingson@gmail.com")
as necessary.
Found the following HTML validation problems:
download_gpkg.html:50:1 (download_gpkg.Rd:12): Warning: missing </ul> before </div>
download_gpkg_anp.html:50:1 (download_gpkg_anp.Rd:12): Warning: missing </ul> before </div>
load_gpkg.html:46:1 (load_gpkg.Rd:10): Warning: missing </ul> before </div>
select_data_level.html:50:1 (select_data_level.Rd:12): Warning: missing </ul> before </div>
select_data_type.html:50:1 (select_data_type.Rd:12): Warning: missing </ul> before </div>
select_metadata.html:52:1 (select_metadata.Rd:14): Warning: missing </ul> before </div>
select_metadata_anp.html:46:1 (select_metadata_anp.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mark A. Bell <mark.bell521@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mark", "A."),
                      family = "Bell.",
                      role = "aut",
                      email = "mark.bell521@gmail.com"),
               person(given = c("Mark", "A."),
                      family = "Bell",
                      role = "cre",
                      email = "mark.bell521@gmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘geoscale-package.Rd’:
    \keyword{time-series,plot}
  File ‘geoscaleBox.Rd’:
    \keyword{time-series,plot}
  File ‘geoscalePlot.Rd’:
    \keyword{time-series,plot}
Maintainer: ‘Shant Sukljian <asshtnt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shant",
                    family = "Sukljian",
                    role = c("aut", "cre"),
                    email = "asshtnt@gmail.com")
as necessary.
Found the following HTML validation problems:
create_correlation_plots.html:50:1 (create_correlation_plots.Rd:12): Warning: missing </ul> before </div>
save_temporal_results.html:54:1 (save_temporal_results.Rd:14): Warning: missing </ul> before </div>
validate_method_compatibility.html:54:1 (validate_method_compatibility.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
geos_minimum_bounding_circle.html:66:1 (geos_minimum_bounding_circle.Rd:31): Warning: missing </ul> before </div>
vctrs-methods.html:48:1 (vctrs-methods.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Antoine Lucas <antoinelucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Lucas",
                    role = c("aut", "cre"),
                    email = "antoinelucas@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following calls to data() loading into the global environment:
File ‘geotools/R/zzz.R’:
  data(fr_geo_rad)
See section ‘Good practice’ in ‘?data’.
Found the following HTML validation problems:
write.geotop.table.html:93:1 (write.geotop.table.Rd:39): Warning: missing </ul> before </div>
Maintainer: ‘Michael Robbins <mrobbins@rand.org>’

The Description field contains
  Robbins (2021) <arXiv:2008.02243>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
webTable.html:78:1 (webTable.Rd:30): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>), S. Vimala Devi [aut], J. Radhamani [aut], Sherry Rachel Jacob [aut], Kalyani Srinivasan [aut], ICAR-NBGPR [cph] (www.nbpgr.ernet.in)’
  Authors@R: ‘J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), S. Vimala Devi [aut], J. Radhamani [aut], Sherry Rachel Jacob [aut], Kalyani Srinivasan [aut], ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in)’
Found the following HTML validation problems:
plot.html:53:1 (plot.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
git_submodule.html:88:1 (git_submodule.Rd:43): Warning: missing </ul> before </div>
Maintainer: ‘Dandi Qiao <redaq@channing.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dandi",
                      family = "Qiao",
                      role = c("aut", "cre"),
                      email = "redaq@channing.harvard.edu"),
               person(given = c("Michael", "H."),
                      family = "Cho",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘query_gesla.R’ ‘query_gesla.Rd’ ‘write_gesla.Rd’
Maintainer: ‘Natalia Zemlianskaia <natasha.zemlianskaia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Natalia",
                    family = "Zemlianskaia",
                    role = c("aut", "cre"),
                    email = "natasha.zemlianskaia@gmail.com")
as necessary.

The Description field contains
  details see Zemlianskaia et al. (2021) <arxiv:2103.13510>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) gesso.cv.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
df2json.html:55:1 (df2json.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
function.ending.point.html:54:1 (function.ending.point.Rd:14): Warning: missing </ul> before </div>
translate.fn.calls.html:63:1 (translate.fn.calls.Rd:21): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gld_read_lattes_zip.R’
Maintainer: ‘Lerato E Magosi <magosil86@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zuguang Gu <z.gu@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zuguang",
                    family = "Gu",
                    role = c("aut", "cre"),
                    email = "z.gu@dkfz.de")
as necessary.
Maintainer: ‘Alexey Seleznev <selesnow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Seleznev",
                    role = c("aut", "cre"),
                    email = "selesnow@gmail.com")
as necessary.
Maintainer: ‘Marcelo S. Perlin <marceloperlin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcelo", "S."),
                    family = "Perlin",
                    role = c("aut", "cre"),
                    email = "marceloperlin@gmail.com")
as necessary.
Found the following HTML validation problems:
req_cache_getrad.html:84:1 (req_cache_getrad.Rd:35): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is.curve_set.html:46:1 (is.curve_set.Rd:10): Warning: missing </ul> before </div>
plot.combined_fboxplot.html:88:1 (plot.combined_fboxplot.Rd:39): Warning: missing </ul> before </div>
print.GET_contingency.html:51:1 (print.GET_contingency.Rd:12): Warning: missing </ul> before </div>
print.combined_fboxplot.html:51:1 (print.combined_fboxplot.Rd:12): Warning: missing </ul> before </div>
print.combined_global_envelope.html:51:1 (print.combined_global_envelope.Rd:12): Warning: missing </ul> before </div>
print.curve_set.html:51:1 (print.curve_set.Rd:12): Warning: missing </ul> before </div>
print.deviation_test.html:51:1 (print.deviation_test.Rd:12): Warning: missing </ul> before </div>
print.fboxplot.html:51:1 (print.fboxplot.Rd:12): Warning: missing </ul> before </div>
print.fclust.html:51:1 (print.fclust.Rd:12): Warning: missing </ul> before </div>
print.fdr_envelope.html:51:1 (print.fdr_envelope.Rd:12): Warning: missing </ul> before </div>
print.global_envelope.html:51:1 (print.global_envelope.Rd:12): Warning: missing </ul> before </div>
rMatClustlpp.html:67:1 (rMatClustlpp.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Lerato E Magosi <magosil86@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Genaro Sucarrat <genaro.sucarrat@bi.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Genaro",
                      family = "Sucarrat",
                      role = c("aut", "cre"),
                      email = "genaro.sucarrat@bi.no"),
               person(given = "Felix",
                      family = "Pretis",
                      role = "aut"),
               person(given = "James",
                      family = "Reade",
                      role = "aut"),
               person(given = "Jonas",
                      family = "Kurle",
                      role = "ctb"),
               person(given = "Moritz",
                      family = "Schwarz",
                      role = "ctb"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Sydney Manning <sydney.manning@unthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhengyang",
                      family = "Zhou",
                      role = "aut"),
               person(given = "Sydney",
                      family = "Manning",
                      role = "cre",
                      email = "sydney.manning@unthsc.edu"))
as necessary.
Maintainer: ‘Alex J. Cannon <alex.cannon@canada.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
gev.html:102:1 (gev.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Ivan Bezerra Allaman <ivanalaman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ivan", "Bezerra"),
                      family = "Allaman",
                      role = c("aut", "cre"),
                      email = "ivanalaman@gmail.com"),
               person(given = c("Jose", "Claudio"),
                      family = "Faria",
                      role = "aut",
                      email = "joseclaudio.faria@gmail.com"))
as necessary.
Maintainer: ‘Tino Werner <tino.werner1@uni-oldenburg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  extract_gfc.Rd: writeRaster
  scale_by_pixel_area.Rd: dataType
  scale_toar.Rd: writeRaster
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
check_aoi.html:48:1 (check_aoi.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  <arXiv:2301.12009>). We can verify the global hypothesis about equality
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sarah Friedrich <sarah.friedrich@math.uni-augsburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sarah",
                      family = "Friedrich",
                      role = c("aut", "cre"),
                      email = "sarah.friedrich@math.uni-augsburg.de"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"),
               person(given = "Marc",
                      family = "Ditzhaus",
                      role = "aut"),
               person(given = "Philipp",
                      family = "Steinhauer",
                      role = "aut"))
as necessary.
checkRd: (-1) QANOVA.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:67: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Acero William <wfaceror@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Acero",
                      family = "William",
                      role = c("aut", "cre"),
                      email = "wfaceror@unal.edu.co"),
               person(given = "Gutierrez",
                      family = "Andres",
                      role = "aut",
                      email = "andres.gutierrez@un.org"),
               person(given = "Trujillo",
                      family = "Leonardo",
                      role = "aut",
                      email = "ltrujillo@unal.edu.co"))
as necessary.
Found the following HTML validation problems:
getWaternomicsData_NBS.html:50:1 (getWaternomicsData_NBS.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jia-Han Shih <tommy355097@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jia-Han",
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "tommy355097@gmail.com")
as necessary.
Found the following HTML validation problems:
GPareto.html:81:1 (GPareto.Rd:34): Warning: missing </ul> before </div>
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.

The Description field contains
  found in Hong Zhang and Zheyang Wu (2020) <arXiv:2003.01286>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) gfonts.Rd:8: Lost braces; missing escapes or markup?
     8 | Download Google fonts and generate CSS to use in {rmarkdown} documents and
       |                                                  ^
checkRd: (-1) gfonts.Rd:9: Lost braces; missing escapes or markup?
     9 | {shiny} applications. Some popular fonts are included and ready to use.
       | ^
checkRd: (-1) use_pkg_gfont.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Use a Google Font included in {gfonts}}
       |                                      ^
Found the following HTML validation problems:
simDataFullyObs.html:66:1 (simDataFullyObs.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
lazy_birdwatcher.html:57:1 (lazy_birdwatcher.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Mohamed Soudy <MohmedSoudy2009@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mohamed",
                    family = "Soudy",
                    role = c("aut", "cre"),
                    email = "mohmedsoudy2009@gmail.com")
as necessary.
Found the following HTML validation problems:
align_phylo.html:130:1 (align_phylo.Rd:67): Warning: missing </ul> before </div>
continuous_limits.html:52:1 (continuous_limits.Rd:11): Warning: missing </ul> before </div>
cross_none.html:77:1 (cross_none.Rd:33): Warning: missing </ul> before </div>
element_vec.html:127:1 (element_vec.Rd:54): Warning: missing </ul> before </div>
layout_expand.html:56:1 (layout_expand.Rd:15): Warning: missing </ul> before </div>
link_line.html:62:1 (link_line.Rd:24): Warning: missing </ul> before </div>
link_tetragon.html:63:1 (link_tetragon.Rd:25): Warning: missing </ul> before </div>
mark_line.html:61:1 (mark_line.Rd:23): Warning: missing </ul> before </div>
mark_tetragon.html:63:1 (mark_tetragon.Rd:25): Warning: missing </ul> before </div>
mark_triangle.html:79:1 (mark_triangle.Rd:34): Warning: missing </ul> before </div>
new_tune.html:64:1 (new_tune.Rd:17): Warning: missing </ul> before </div>
plot_ideogram.html:195:1 (plot_ideogram.Rd:100): Warning: missing </ul> before </div>
Found the following HTML validation problems:
NEWS.html:45:47 (NEWS.Rd:17): Warning: missing </p> before <a>
NEWS.html:45:5 (NEWS.Rd:17): Warning: missing </a> before <a>
NEWS.html:45:129 (NEWS.Rd:17): Warning: inserting implicit <p>
NEWS.html:45:133 (NEWS.Rd:17): Warning: discarding unexpected </a>
NEWS.html:45:47 (NEWS.Rd:17): Warning: trimming empty <p>
NEWS.html:45:129 (NEWS.Rd:17): Warning: trimming empty <p>
Found the following HTML validation problems:
add_ref_boxes.html:73:1 (add_ref_boxes.Rd:27): Warning: missing </ul> before </div>
add_ref_lines.html:58:1 (add_ref_lines.Rd:16): Warning: missing </ul> before </div>
brew_colors.html:46:1 (brew_colors.Rd:10): Warning: missing </ul> before </div>
get_x_axis_labels.html:50:1 (get_x_axis_labels.Rd:12): Warning: missing </ul> before </div>
is_date.html:46:1 (is_date.Rd:10): Warning: missing </ul> before </div>
mapping_color_to_fill.html:46:1 (mapping_color_to_fill.Rd:10): Warning: missing </ul> before </div>
plotting_data_type.html:46:1 (plotting_data_type.Rd:10): Warning: missing </ul> before </div>
print_if_interactive.html:46:1 (print_if_interactive.Rd:10): Warning: missing </ul> before </div>
rescale01.html:60:1 (rescale01.Rd:27): Warning: missing </ul> before </div>
str.ggmatrix.html:48:1 (str.ggmatrix.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
anim_save.html:67:1 (anim_save.Rd:20): Warning: missing </ul> before </div>
layer_type.html:50:1 (layer_type.Rd:17): Warning: missing </ul> before </div>
save_animation.html:51:1 (save_animation.Rd:12): Warning: missing </ul> before </div>
tween_before_stat.html:46:1 (tween_before_stat.Rd:10): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_quasirandom.Rd: geom_boxplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crime.Rd’ ‘get_SVD.Rd’ ‘ggscreeplot.Rd’ ‘reflect.Rd’
Found the following HTML validation problems:
dot-coordCorrection.html:100:1 (dot-coordCorrection.Rd:43): Warning: missing </ul> before </div>
dot-seekBrace.html:68:1 (dot-seekBrace.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
brick_row.html:78:1 (brick_row.Rd:30): Warning: missing </ul> before </div>
build_wall.html:62:1 (build_wall.Rd:18): Warning: missing </ul> before </div>
build_wall_waffle.html:62:1 (build_wall_waffle.Rd:18): Warning: missing </ul> before </div>
half_brick_row.html:73:1 (half_brick_row.Rd:27): Warning: missing </ul> before </div>
make_new_fill.html:54:1 (make_new_fill.Rd:14): Warning: missing </ul> before </div>
robust_random.html:50:1 (robust_random.Rd:12): Warning: missing </ul> before </div>
robust_round.html:50:1 (robust_round.Rd:12): Warning: missing </ul> before </div>
switch_pos.html:50:1 (switch_pos.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Jongbin Jung <me@jongbin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jongbin",
                    family = "Jung",
                    role = c("aut", "cre"),
                    email = "me@jongbin.com")
as necessary.
Maintainer: ‘David Sjoberg <dav.sjob@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Sjoberg",
                    role = c("aut", "cre"),
                    email = "dav.sjob@gmail.com")
as necessary.
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ggbump)
  > 
  > test_check("ggbump")
  [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-numeric_inputs.R:17:3'): multiplication works ────────────────
  ... %>% class() not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test-numeric_inputs.R:21:3'): multiplication works ────────────────
  ... %>% class() not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test-numeric_inputs.R:26:3'): multiplication works ────────────────
  ... %>% class() not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  
  [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
  Error: Test failures
  Execution halted
Author field differs from that derived from Authors@R
  Author:    ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Maintainer: ‘Kyla Belisario <kyla_belisario@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyla",
                    family = "Belisario",
                    role = c("aut", "cre"),
                    email = "kyla_belisario@protonmail.com")
as necessary.
Found the following HTML validation problems:
as.data.frame.tidy_dagitty.html:63:1 (as.data.frame.tidy_dagitty.Rd:20): Warning: missing </ul> before </div>
as.tbl.tidy_daggity.html:66:1 (as.tbl.tidy_daggity.Rd:23): Warning: missing </ul> before </div>
expand_plot.html:54:1 (expand_plot.Rd:16): Warning: missing </ul> before </div>
fortify.html:58:1 (fortify.Rd:18): Warning: missing </ul> before </div>
ggplot.tidy_dagitty.html:61:1 (ggplot.tidy_dagitty.Rd:20): Warning: missing </ul> before </div>
is.tidy_dagitty.html:46:1 (is.tidy_dagitty.Rd:10): Warning: missing </ul> before </div>
print.tidy_dagitty.html:51:1 (print.tidy_dagitty.Rd:12): Warning: missing </ul> before </div>
scale_adjusted.html:70:1 (scale_adjusted.Rd:19): Warning: missing </ul> before </div>
tbl_df.tidy_daggity.html:46:1 (tbl_df.tidy_daggity.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Neal Grantham <neal@nsgrantham.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Neal",
                    family = "Grantham",
                    role = c("aut", "cre"),
                    email = "neal@nsgrantham.com")
as necessary.
Running examples in ‘ggdark-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dark_mode
> ### Title: Activate dark mode on a 'ggplot2' theme
> ### Aliases: dark_mode
> 
> ### ** Examples
> 
> library(ggplot2)
> 
> p1 <- ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) +
+   geom_point()
> 
> p1  # theme returned by theme_get()
> p1 + dark_mode()  # activate dark mode on theme returned by theme_get()
Error in match(x, table, nomatch = 0L) : 
  'match' requires vector arguments
Calls: dark_mode -> %in%
Execution halted
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ggdark)
  > 
  > test_check("ggdark")
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_dark_mode.R:10:1'): (code run outside of `test_that()`) ────────
  Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments
  Backtrace:
      ▆
   1. └─ggdark::dark_mode(light_theme) at test_dark_mode.R:10:1
   2.   └─geoms[["GeomPoint"]]$default_aes$colour %in% ...
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
components.html:62:1 (components.Rd:31): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rpartco.html:50:1 (rpartco.Rd:12): Warning: missing </ul> before </div>
treeco.html:50:1 (treeco.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ConvertChains.html:58:1 (ConvertChains.Rd:16): Warning: missing </ul> before </div>
DIC.html:52:1 (DIC.Rd:15): Warning: missing </ul> before </div>
GetPNames.html:46:1 (GetPNames.Rd:10): Warning: missing </ul> before </div>
StartNewsamples.html:141:1 (StartNewsamples.Rd:73): Warning: missing </ul> before </div>
check_pvec.html:50:1 (check_pvec.Rd:12): Warning: missing </ul> before </div>
dbeta_lu.html:66:1 (dbeta_lu.Rd:20): Warning: missing </ul> before </div>
dcauchy_l.html:58:1 (dcauchy_l.Rd:16): Warning: missing </ul> before </div>
dconstant.html:66:1 (dconstant.Rd:20): Warning: missing </ul> before </div>
deviance.model.html:53:1 (deviance.model.Rd:12): Warning: missing </ul> before </div>
dgamma_l.html:66:1 (dgamma_l.Rd:20): Warning: missing </ul> before </div>
dlnorm_l.html:66:1 (dlnorm_l.Rd:20): Warning: missing </ul> before </div>
iseffective.html:59:1 (iseffective.Rd:17): Warning: missing </ul> before </div>
isflat.html:73:1 (isflat.Rd:27): Warning: missing </ul> before </div>
isstuck.html:71:1 (isstuck.Rd:23): Warning: missing </ul> before </div>
mcmc_list.model.html:58:1 (mcmc_list.model.Rd:16): Warning: missing </ul> before </div>
random.html:59:1 (random.Rd:16): Warning: missing </ul> before </div>
summary_mcmc_list.html:54:1 (summary_mcmc_list.Rd:14): Warning: missing </ul> before </div>
unstick_one.html:50:1 (unstick_one.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
example_many_sequences.html:75:1 (example_many_sequences.Rd:23): Warning: missing </ul> before </div>
fastq_quality_scores.html:67:1 (fastq_quality_scores.Rd:14): Warning: missing </ul> before </div>
sequence_colour_palettes.html:65:1 (sequence_colour_palettes.Rd:18): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘girder_experiment.Rd’
Found the following HTML validation problems:
lazy_birdwatcher.html:57:1 (lazy_birdwatcher.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Lindsay Rutter <ggenealogypackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lindsay",
                      family = "Rutter",
                      role = c("aut", "cre"),
                      email = "ggenealogypackage@gmail.com"),
               person(given = "Susan",
                      family = "Vanderplas",
                      role = "aut"),
               person(given = "Di",
                      family = "Cook",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
buildPathDF.html:67:1 (buildPathDF.Rd:16): Warning: missing </ul> before </div>
getPathOnly.html:70:1 (getPathOnly.Rd:20): Warning: missing </ul> before </div>
nodeToDF.html:61:1 (nodeToDF.Rd:16): Warning: missing </ul> before </div>
Found the following assignments to the global environment:
File ‘ggExtra/R/ggMarginalGadget.R’:
  assign(plotname, eval(parse(text = origPlot)), envir = .GlobalEnv)
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geometrical_data_analysis.R’ ‘ggmca.Rd’ ‘ggmca_with_base_ref.Rd’
    ‘ggpca_3d.Rd’ ‘ggpca_cor_circle.Rd’ ‘pca_interpret.Rd’ ‘utils.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lib.R’
Author field differs from that derived from Authors@R
  Author:    ‘Mikko Vihtakari [aut, cre] (Institute of Marine Research, <https://orcid.org/0000-0003-0371-4319>)’
  Authors@R: ‘Mikko Vihtakari [aut, cre] (affiliation: Institute of Marine Research, ORCID: <https://orcid.org/0000-0003-0371-4319>)’
Found the following HTML validation problems:
scale_unit.html:50:1 (scale_unit.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
interactive_layer_factory.html:47:1 (interactive_layer_factory.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
apply_grid.html:58:1 (apply_grid.Rd:16): Warning: missing </ul> before </div>
flatten.html:46:1 (flatten.Rd:10): Warning: missing </ul> before </div>
geom_confint.html:73:1 (geom_confint.Rd:27): Warning: missing </ul> before </div>
grid.draw.ggmultiplot.html:53:1 (grid.draw.ggmultiplot.Rd:13): Warning: missing </ul> before </div>
print-ggmultiplot-method.html:47:1 (print-ggmultiplot-method.Rd:10): Warning: missing </ul> before </div>
show-ggmultiplot-method.html:47:1 (show-ggmultiplot-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
theme_stamp.html:54:1 (theme_stamp.Rd:14): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aaa.R’ ‘flip.R’ ‘geom_link.Rd’ ‘geom_seq.Rd’ ‘geom_seq_break.Rd’
    ‘shift.Rd’ ‘track_info.Rd’
Running examples in ‘gggenomes-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_feats
> ### Title: Add different types of tracks
> ### Aliases: add_feats add_links add_subfeats add_sublinks add_clusters
> ###   add_tracks
> 
> ### ** Examples
> 
> # Add some repeat annotations
> gggenomes(seqs = emale_seqs) %>%
+   add_feats(repeats = emale_tirs) +
+   geom_seq() + geom_feat()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the gggenomes package.
  Please report the issue at <https://github.com/thackl/gggenomes/issues>.
Error in UseMethod("add_feats") : 
  no applicable method for 'add_feats' applied to an object of class "NULL"
Calls: %>% -> add_feats
Execution halted
Found the following HTML validation problems:
theme_extensions.html:73:1 (theme_extensions.Rd:31): Warning: missing </ul> before </div>
Error(s) in re-building vignettes:
  ...
--- re-building ‘gghalves.Rmd’ using rmarkdown

Quitting from gghalves.Rmd:39-42 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gghalves.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error in `fun()`:
! argument "layout" is missing, with no default
--- failed re-building ‘gghalves.Rmd’

SUMMARY: processing the following file failed:
  ‘gghalves.Rmd’

Error: Vignette re-building failed.
Execution halted
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggheatmap_theme.Rd: theme
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
geom_image_interactive.html:47:1 (geom_image_interactive.Rd:10): Warning: missing </ul> before </div>
geom_phylopic_interactive.html:47:1 (geom_phylopic_interactive.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
edit_layers.html:60:1 (edit_layers.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
addLabelDf.html:50:1 (addLabelDf.Rd:12): Warning: missing </ul> before </div>
coord_radar.html:54:1 (coord_radar.Rd:14): Warning: missing </ul> before </div>
makeEq.html:50:1 (makeEq.Rd:12): Warning: missing </ul> before </div>
model2df.html:54:1 (model2df.Rd:14): Warning: missing </ul> before </div>
myscale.html:46:1 (myscale.Rd:10): Warning: missing </ul> before </div>
myscale2.html:54:1 (myscale2.Rd:14): Warning: missing </ul> before </div>
newColName.html:46:1 (newColName.Rd:10): Warning: missing </ul> before </div>
num2factorDf.html:54:1 (num2factorDf.Rd:14): Warning: missing </ul> before </div>
p2chr.html:46:1 (p2chr.Rd:10): Warning: missing </ul> before </div>
palette2colors.html:50:1 (palette2colors.Rd:12): Warning: missing </ul> before </div>
pastecolon.html:46:1 (pastecolon.Rd:10): Warning: missing </ul> before </div>
pastecomma.html:46:1 (pastecomma.Rd:10): Warning: missing </ul> before </div>
subcolors.html:54:1 (subcolors.Rd:14): Warning: missing </ul> before </div>
theme_clean.html:46:1 (theme_clean.Rd:10): Warning: missing </ul> before </div>
theme_clean2.html:54:1 (theme_clean2.Rd:14): Warning: missing </ul> before </div>
unselectNumeric.html:54:1 (unselectNumeric.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ggiraph.html:49:1 (ggiraph.Rd:10): Warning: missing </ul> before </div>
ggiraphOutput.html:49:1 (ggiraphOutput.Rd:10): Warning: missing </ul> before </div>
renderGirafe.html:60:1 (renderGirafe.Rd:17): Warning: missing </ul> before </div>
renderggiraph.html:49:1 (renderggiraph.Rd:10): Warning: missing </ul> before </div>
run_girafe_example.html:48:1 (run_girafe_example.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘inset_shape_circle.R’ ‘inset_shape_rectangle.R’ ‘inset_shape_sf.R’
Maintainer: ‘Haley Jeppson <hjeppson@iastate.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/haleyjeppson/ggmosaic
which should likely be
  https://github.com/haleyjeppson/ggmosaic/issues
instead.
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggmosaic.Rcheck/00install.out’ for details.
Maintainer: ‘Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugo",
                    family = "Gasca-Aragon",
                    role = c("aut", "cre"),
                    email = "hugo_gasca_aragon@hotmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ggmugs.R’
Found the following HTML validation problems:
coord_radar-deprecated.html:61:1 (coord_radar-deprecated.Rd:20): Warning: missing </ul> before </div>
get_scaledData.html:76:1 (get_scaledData.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ggnetwork.html:57:1 (ggnetwork.Rd:17): Warning: missing </ul> before </div>
theme_blank.html:55:1 (theme_blank.Rd:14): Warning: missing </ul> before </div>
theme_facet.html:55:1 (theme_facet.Rd:14): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Mikko Vihtakari [aut, cre] (Institute of Marine Research, <https://orcid.org/0000-0003-0371-4319>), Roger Bivand [ctb], Hadley Wickham [ctb]’
  Authors@R: ‘Mikko Vihtakari [aut, cre] (affiliation: Institute of Marine Research, ORCID: <https://orcid.org/0000-0003-0371-4319>), Roger Bivand [ctb], Hadley Wickham [ctb]’
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ggparallel)
  Loading required package: ggplot2
  > 
  > test_check("ggparallel")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-ggparallel.R:12:3'): ggparallel works ──────────────────────────
  Error in `UseMethod("ggplot_build")`: no applicable method for 'ggplot_build' applied to an object of class "c('gg', 'ggplot')"
  Backtrace:
      ▆
   1. └─ggplot2::ggplot_build(test_mtcars_plot) at test-ggparallel.R:12:3
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
Found the following HTML validation problems:
get_predictions.html:60:1 (get_predictions.Rd:18): Warning: missing </ul> before </div>
makeContent.nodeplotgrob.html:47:1 (makeContent.nodeplotgrob.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ggpattern-defunct.html:85:1 (ggpattern-defunct.Rd:44): Warning: missing </ul> before </div>
checkRd: (-1) pcp_scale.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:54-55: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
computeDistance.html:70:1 (computeDistance.Rd:21): Warning: missing </ul> before </div>
dot-addNodes.html:87:1 (dot-addNodes.Rd:33): Warning: missing </ul> before </div>
dot-restoreNames.html:91:1 (dot-restoreNames.Rd:43): Warning: missing </ul> before </div>
ggPedigree.core.html:159:1 (ggPedigree.core.Rd:75): Warning: missing </ul> before </div>
ggRelatednessMatrix.core.html:58:1 (ggRelatednessMatrix.core.Rd:15): Warning: missing </ul> before </div>
optimizePedigree.html:58:1 (optimizePedigree.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_period.html:46:1 (get_period.Rd:10): Warning: missing </ul> before </div>
is.periodic.html:46:1 (is.periodic.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
validate_abundance_data.html:50:1 (validate_abundance_data.Rd:12): Warning: missing </ul> before </div>
validate_group_sizes.html:51:1 (validate_group_sizes.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Yabing Song <songyb0519@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggdonut.Rd: geom_text_repel
  ggnestedpie.Rd: geom_text_repel
  ggpie.Rd: geom_text_repel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
add_theme.html:55:1 (add_theme.Rd:15): Warning: missing </ul> before </div>
aes_auto.html:50:1 (aes_auto.Rd:12): Warning: missing </ul> before </div>
as.list.ggproto.html:68:1 (as.list.ggproto.Rd:23): Warning: missing </ul> before </div>
class_ggplot.html:112:1 (class_ggplot.Rd:51): Warning: missing </ul> before </div>
class_ggplot_built.html:62:1 (class_ggplot_built.Rd:16): Warning: missing </ul> before </div>
class_mapping.html:56:1 (class_mapping.Rd:14): Warning: missing </ul> before </div>
class_theme.html:61:1 (class_theme.Rd:17): Warning: missing </ul> before </div>
coord_munch.html:65:1 (coord_munch.Rd:20): Warning: missing </ul> before </div>
datetime_scale.html:271:1 (datetime_scale.Rd:152): Warning: missing </ul> before </div>
element_grob.html:52:1 (element_grob.Rd:13): Warning: missing </ul> before </div>
element_render.html:59:1 (element_render.Rd:16): Warning: missing </ul> before </div>
fortify.sp.html:80:1 (fortify.sp.Rd:35): Warning: missing </ul> before </div>
gg_dep.html:51:1 (gg_dep.Rd:13): Warning: missing </ul> before </div>
ggplotGrob.html:46:1 (ggplotGrob.Rd:10): Warning: missing </ul> before </div>
guide_none.html:54:1 (guide_none.Rd:16): Warning: missing </ul> before </div>
is_rel.html:46:1 (is_rel.Rd:10): Warning: missing </ul> before </div>
is_tests.html:89:1 (is_tests.Rd:73): Warning: missing </ul> before </div>
layer_sf.html:173:1 (layer_sf.Rd:97): Warning: missing </ul> before </div>
old_guide.html:61:1 (old_guide.Rd:25): Warning: missing </ul> before </div>
remove_missing.html:66:1 (remove_missing.Rd:18): Warning: missing </ul> before </div>
stat_manual.html:198:1 (stat_manual.Rd:193): Warning: <h3> anchor "Aesthetics" already defined
transform_position.html:51:1 (transform_position.Rd:13): Warning: missing </ul> before </div>
waiver.html:52:1 (waiver.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
textFunction.html:67:1 (textFunction.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
reverselog_trans.html:46:1 (reverselog_trans.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_shrink.html:46:1 (check_shrink.Rd:10): Warning: missing </ul> before </div>
pk_pd.html:46:1 (pk_pd.Rd:10): Warning: missing </ul> before </div>
pmx_manual_nm_import.html:62:1 (pmx_manual_nm_import.Rd:22): Warning: missing </ul> before </div>
pmx_register_plot.html:54:1 (pmx_register_plot.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
facet_share.html:125:1 (facet_share.Rd:71): Warning: missing </ul> before </div>
Found the following HTML validation problems:
these2logical.html:58:1 (these2logical.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
draw_prism_bracket.html:97:1 (draw_prism_bracket.Rd:45): Warning: missing </ul> before </div>
draw_prism_minor.html:89:1 (draw_prism_minor.Rd:39): Warning: missing </ul> before </div>
draw_prism_offset.html:84:1 (draw_prism_offset.Rd:36): Warning: missing </ul> before </div>
draw_prism_offset_minor.html:89:1 (draw_prism_offset_minor.Rd:39): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ggpubr-common-params.html:44:1 (ggpubr-common-params.Rd:11): Warning: missing </ul> before </div>
ggpubr_args.html:149:1 (ggpubr_args.Rd:76): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggplot2-ggproto.Rd: geom_jitter, geom_count, geom_bin2d, layer,
    geom_smooth, geom_quantile, geom_density_2d, geom_boxplot,
    geom_hex, geom_density2d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
internal_extractors.html:57:1 (internal_extractors.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Thomas Clarke <tclarke@jcvi.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
summary.ggrasp.html:51:1 (summary.ggrasp.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘reveal_aes.Rd’ ‘reveal_axis.Rd’ ‘reveal_groups.Rd’
    ‘reveal_layers.Rd’ ‘reveal_panels.Rd’ ‘reveal_save.Rd’
Found the following HTML validation problems:
netdata.coxph.html:194:1 (netdata.coxph.Rd:99): Warning: missing </ul> before </div>
netdata.crr.html:194:1 (netdata.crr.Rd:99): Warning: missing </ul> before </div>
netdata.glm.html:194:1 (netdata.glm.Rd:99): Warning: missing </ul> before </div>
netdata.randomFores.html:194:1 (netdata.randomFores.Rd:100): Warning: missing </ul> before </div>
netdata.scixgboot.html:194:1 (netdata.scixgboot.Rd:99): Warning: missing </ul> before </div>
netdata.svm.html:194:1 (netdata.svm.Rd:99): Warning: missing </ul> before </div>
Maintainer: ‘Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    * Changes all data options to .data to decrease possibility of column naming overlap
Maintainer: ‘Omar Wagih <omarwagih@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Omar",
                    family = "Wagih",
                    role = c("aut", "cre"),
                    email = "omarwagih@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggseqlogo.Rd: facet_wrap
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
list_col_schemes.html:46:1 (list_col_schemes.Rd:10): Warning: missing </ul> before </div>
list_fonts.html:46:1 (list_fonts.Rd:10): Warning: missing </ul> before </div>
theme_logo.html:50:1 (theme_logo.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_ggside.html:68:1 (as_ggside.Rd:26): Warning: missing </ul> before </div>
geom_xsideabline.html:206:1 (geom_xsideabline.Rd:149): Warning: missing </ul> before </div>
ggside-ggproto-coord.html:64:1 (ggside-ggproto-coord.Rd:25): Warning: missing </ul> before </div>
ggside_geom.html:58:1 (ggside_geom.Rd:16): Warning: missing </ul> before </div>
ggside_layer.html:188:1 (ggside_layer.Rd:109): Warning: missing </ul> before </div>
ggside_layout.html:46:1 (ggside_layout.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Constantin Ahlmann-Eltze <artjom31415@googlemail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Constantin Ahlmann-Eltze [aut, cre, ctb] (<https://orcid.org/0000-0002-3762-068X>, @const_ae), Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Constantin Ahlmann-Eltze [aut, cre, ctb] (ORCID: <https://orcid.org/0000-0002-3762-068X>, Twitter: @const_ae), Indrajeet Patil [aut, ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Maintainer: ‘Felipe Carvalho <lipecaso@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
apply_normalization.html:51:1 (apply_normalization.Rd:13): Warning: missing </ul> before </div>
check_idfactor_arg.html:55:1 (check_idfactor_arg.Rd:15): Warning: missing </ul> before </div>
subtitle_spct.generic_spct.html:65:1 (subtitle_spct.generic_spct.Rd:22): Warning: missing </ul> before </div>
title_spct.html:55:1 (title_spct.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
geom_histogramh.html:133:1 (geom_histogramh.Rd:79): Warning: missing </ul> before </div>
position-vertical.html:116:1 (position-vertical.Rd:67): Warning: missing </ul> before </div>
Found the following HTML validation problems:
scale_starshape.html:172:1 (scale_starshape.Rd:82): Warning: missing </ul> before </div>
starshape_pal.html:46:1 (starshape_pal.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ggbetweenstats.html:582:1 (ggbetweenstats.Rd:317): Warning: <h4> anchor "between-subjects" already defined
ggbetweenstats.html:641:1 (ggbetweenstats.Rd:338): Warning: <h4> anchor "within-subjects" already defined
ggbetweenstats.html:718:1 (ggbetweenstats.Rd:371): Warning: <h4> anchor "between-subjects" already defined
ggbetweenstats.html:758:1 (ggbetweenstats.Rd:388): Warning: <h4> anchor "within-subjects" already defined
ggwithinstats.html:599:1 (ggwithinstats.Rd:326): Warning: <h4> anchor "between-subjects" already defined
ggwithinstats.html:658:1 (ggwithinstats.Rd:347): Warning: <h4> anchor "within-subjects" already defined
ggwithinstats.html:735:1 (ggwithinstats.Rd:380): Warning: <h4> anchor "between-subjects" already defined
ggwithinstats.html:775:1 (ggwithinstats.Rd:397): Warning: <h4> anchor "within-subjects" already defined
Found the following HTML validation problems:
ggcoef_multicomponents.html:240:1 (ggcoef_multicomponents.Rd:151): Warning: missing </ul> before </div>
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ggstream)
  > 
  > test_check("ggstream")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-geom_stream.R:4:3'): geom_stream ─────────────────────────────
  class(...) not equal to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Brittany Alexander <balexanderstatistics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brittany",
                    family = "Alexander",
                    role = c("aut", "cre"),
                    email = "balexanderstatistics@gmail.com")
as necessary.
Found the following HTML validation problems:
theme_white_f.html:52:1 (theme_white_f.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cnetplot.html:131:1 (cnetplot.Rd:69): Warning: missing </ul> before </div>
Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ggtern.Rcheck/00install.out’ for details.
Author field differs from that derived from Authors@R
  Author:    ‘Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Brenton M. Wiernik [aut, cre] (<https://orcid.org/0000-0001-9560-6336>, @bmwiernik)’
  Authors@R: ‘Claus O. Wilke [aut] (ORCID: <https://orcid.org/0000-0002-7470-9261>), Brenton M. Wiernik [aut, cre] (ORCID: <https://orcid.org/0000-0001-9560-6336>, Twitter: @bmwiernik)’
Maintainer: ‘Calli Gross <ggthemeassist@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Calli",
                      family = "Gross",
                      role = c("aut", "cre"),
                      email = "ggthemeassist@icloud.com"),
               person(given = "Philipp",
                      family = "Ottolinger",
                      role = c("aut", "ctb")))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_tufteboxplot.Rd: stat_boxplot, geom_boxplot
  scale_color_tableau.Rd: discrete_scale
  scale_colour_canva.Rd: discrete_scale
  theme_solid.Rd: theme
  theme_tufte.Rd: geom_rug
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
scale_colour_canva.html:56:1 (scale_colour_canva.Rd:19): Warning: missing </ul> before </div>
scale_stata.html:154:1 (scale_stata.Rd:77): Warning: missing </ul> before </div>
solarized_rebase.html:50:1 (solarized_rebase.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
grapes-plus-grapes.html:51:1 (grapes-plus-grapes.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
discretize.html:58:1 (discretize.Rd:17): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Win CRAN check results - R Windows
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_donut.Rd’ ‘geom_donut_slice.Rd’ ‘geom_pie.Rd’
    ‘geom_series_circles.Rd’ ‘geom_series_text.Rd’ ‘geom_slice.Rd’
    ‘stat-series-circles.R’
checkRd: (-1) MODFIT.Rd:33: Lost braces; missing escapes or markup?
    33 |   {chisq_i = sum( (O_iz - E_iz)^2 / E_iz; z = 0, ..., C ), }
       |   ^
checkRd: (-1) probs.GGUM.Rd:27: Lost braces; missing escapes or markup?
    27 |   GUM-based probabilities just constrain alpha to a unit vector of length {I}
       |                                                                           ^
Found the following HTML validation problems:
combinations.html:46:1 (combinations.Rd:10): Warning: missing </ul> before </div>
plotData_add_venn.html:50:1 (plotData_add_venn.Rd:12): Warning: missing </ul> before </div>
print.html:56:1 (print.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Raymond L. Tremblay <raymondtremblay1@mac.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Raymond", ">"),
                      family = "Tremblay",
                      role = "aut"),
               person(given = c("Raymond", "L."),
                      family = "Tremblay",
                      role = "cre",
                      email = "raymondtremblay1@mac.com"))
as necessary.
'library' or 'require' calls not declared from:
  ‘nasaweather’ ‘tourr’
'data(package=)' call not declared from: ‘ggplot2’
Found the following HTML validation problems:
add_guide_axis.html:46:1 (add_guide_axis.Rd:10): Warning: missing </ul> before </div>
add_guide_legend.html:46:1 (add_guide_legend.Rd:10): Warning: missing </ul> before </div>
add_scale.html:55:1 (add_scale.Rd:15): Warning: missing </ul> before </div>
axis_props.html:79:1 (axis_props.Rd:30): Warning: missing </ul> before </div>
bin_vector.html:84:1 (bin_vector.Rd:36): Warning: missing </ul> before </div>
explain.ggvis.html:51:1 (explain.ggvis.Rd:12): Warning: missing </ul> before </div>
fullseq.html:54:1 (fullseq.Rd:14): Warning: missing </ul> before </div>
ggvisOutputElements.html:56:1 (ggvisOutputElements.Rd:15): Warning: missing </ul> before </div>
ggvis_message.html:59:1 (ggvis_message.Rd:16): Warning: missing </ul> before </div>
group_by.html:50:1 (group_by.Rd:13): Warning: missing </ul> before </div>
is.axis_props.html:46:1 (is.axis_props.Rd:10): Warning: missing </ul> before </div>
is.broker.html:46:1 (is.broker.Rd:10): Warning: missing </ul> before </div>
is.ggvis.html:46:1 (is.ggvis.Rd:10): Warning: missing </ul> before </div>
is.legend_props.html:46:1 (is.legend_props.Rd:10): Warning: missing </ul> before </div>
is.scaled_value.html:46:1 (is.scaled_value.Rd:10): Warning: missing </ul> before </div>
legend_props.html:72:1 (legend_props.Rd:27): Warning: missing </ul> before </div>
prop_domain.html:50:1 (prop_domain.Rd:12): Warning: missing </ul> before </div>
save_spec.html:56:1 (save_spec.Rd:17): Warning: missing </ul> before </div>
scaled_value.html:50:1 (scaled_value.Rd:12): Warning: missing </ul> before </div>
scaletype_to_vega_scaletype.html:46:1 (scaletype_to_vega_scaletype.Rd:10): Warning: missing </ul> before </div>
set_scale_label.html:54:1 (set_scale_label.Rd:14): Warning: missing </ul> before </div>
show_tooltip.html:60:1 (show_tooltip.Rd:19): Warning: missing </ul> before </div>
vega_data_parser.html:47:1 (vega_data_parser.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
power_trans.html:46:1 (power_trans.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Yuri Tani Utsunomiya <ytutsunomiya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yuri", "Tani"),
                      family = "Utsunomiya",
                      role = c("aut", "cre"),
                      email = "ytutsunomiya@gmail.com"),
               person(given = c("Andre", "Vieira", "do"),
                      family = "Nascimento",
                      role = "aut"),
               person(given = "Marco",
                      family = "Milanesi",
                      role = "aut"),
               person(given = "Mario",
                      family = "Barbato",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ancsvm.Rd: svm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘annual.R’ ‘anomaly.R’ ‘coverage.R’ ‘daily.R’ ‘flags.R’
    ‘get-country-shapefile.R’ ‘monthly.R’ ‘quarterly.R’ ‘s3_classes.R’
    ‘stations.R’ ‘utils.R’
Found the following HTML validation problems:
country_codes.html:55:1 (country_codes.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Zihuai He <zihuai@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@stanford.edu")
as necessary.
Maintainer: ‘Siyavash Shabani <s.shabani.aut@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyavash",
                      family = "Shabani",
                      role = c("aut", "cre"),
                      email = "s.shabani.aut@gmail.com"),
               person(given = "Reza",
                      family = "Rawassizadeh",
                      role = "aut"))
as necessary.
Maintainer: ‘Ashutosh Srivastava<srivas48@purdue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ashutosh",
                      family = "Srivastava",
                      role = c("aut", "cre"),
                      email = "srivas48@purdue.edu"),
               person(given = "Anindya",
                      family = "Bhadra",
                      role = "aut",
                      email = "bhadra@purdue.edu"))
as necessary.

The Description field contains
  <arXiv:1707.06661>. The function uses matrix decomposition and variable
  <arXiv:1508.03884>. Structure of the graphical horseshoe function was
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Giona Casiraghi <giona@ethz.ch>’

The Description field contains
  Schweitzer, F. (2016) <arXiv:1607.02441>.  Casiraghi, G., Nanumyan, V.,
  Casiraghi, G., (2017) <arXiv:1702.02048> Brandenberger, L., Casiraghi,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Giac.html:99:1 (Giac.Rd:75): Warning: <h5> anchor "Usage" already defined
Giac.html:105:1 (Giac.Rd:79): Warning: <h5> anchor "Arguments" already defined
Giac.html:120:1 (Giac.Rd:88): Warning: <h5> anchor "Returns" already defined
Giac.html:151:1 (Giac.Rd:110): Warning: <h5> anchor "Usage" already defined
Giac.html:163:1 (Giac.Rd:120): Warning: <h5> anchor "Arguments" already defined
Giac.html:187:1 (Giac.Rd:138): Warning: <h5> anchor "Returns" already defined
Giac.html:194:1 (Giac.Rd:141): Warning: <h5> anchor "Examples" already defined
Giac.html:223:1 (Giac.Rd:165): Warning: <h5> anchor "Usage" already defined
Giac.html:229:1 (Giac.Rd:169): Warning: <h5> anchor "Returns" already defined
Found the following HTML validation problems:
check_giedata2input.html:98:1 (check_giedata2input.Rd:42): Warning: missing </ul> before </div>
check_giedatainput.html:98:1 (check_giedatainput.Rd:42): Warning: missing </ul> before </div>
check_gielistinginput.html:62:1 (check_gielistinginput.Rd:18): Warning: missing </ul> before </div>
check_gieunavinput.html:88:1 (check_gieunavinput.Rd:36): Warning: missing </ul> before </div>
construct_url.html:50:1 (construct_url.Rd:12): Warning: missing </ul> before </div>
extract_listelements.html:46:1 (extract_listelements.Rd:10): Warning: missing </ul> before </div>
gie_listinghierarchy.html:62:1 (gie_listinghierarchy.Rd:18): Warning: missing </ul> before </div>
is_response.html:46:1 (is_response.Rd:10): Warning: missing </ul> before </div>
parseresult.html:50:1 (parseresult.Rd:12): Warning: missing </ul> before </div>
send_getrequest.html:54:1 (send_getrequest.Rd:14): Warning: missing </ul> before </div>
setnull.html:50:1 (setnull.Rd:12): Warning: missing </ul> before </div>
try_GET.html:54:1 (try_GET.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Shiyun Lin <linshy27@mail2.sysu.edu.cn>’

The Description field contains
  <arXiv:1407.7819>. Secondly, a closed form solution for graphical lasso
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘John Muschelli <muschellij2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Muschelli",
                    role = c("aut", "cre"),
                    email = "muschellij2@gmail.com")
as necessary.
Found the following HTML validation problems:
writegii.html:60:1 (writegii.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Omar I. Elashkar <omar.ibrahim@miuegypt.edu.eg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Omar", "I."),
                    family = "Elashkar",
                    role = c("aut", "cre"),
                    email = "omar.ibrahim@miuegypt.edu.eg")
as necessary.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  (2021) <arXiv:2102.10670>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) gigg.Rd:70-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Josef",
                      family = "Leydold",
                      role = c("aut", "cre"),
                      email = "josef.leydold@wu.ac.at"),
               person(given = "Wolfgang",
                      family = "Hormann",
                      role = "aut"))
as necessary.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
plot_ssa.html:73:1 (plot_ssa.Rd:27): Warning: missing </ul> before </div>
print_ssa.html:54:1 (print_ssa.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cn_setup.html:55:1 (cn_setup.Rd:16): Warning: missing </ul> before </div>
ctrl_genes.html:55:1 (ctrl_genes.Rd:16): Warning: missing </ul> before </div>
encrypt_creds_path.html:46:1 (encrypt_creds_path.Rd:10): Warning: missing </ul> before </div>
gimap_stats.html:54:1 (gimap_stats.Rd:14): Warning: missing </ul> before </div>
tpm_setup.html:55:1 (tpm_setup.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
environmentSetup.html:48:1 (environmentSetup.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
setupConvolve.html:65:1 (setupConvolve.Rd:24): Warning: missing </ul> before </div>
setupDataLists.html:50:1 (setupDataLists.Rd:12): Warning: missing </ul> before </div>
setupPrepPaths.html:52:1 (setupPrepPaths.Rd:16): Warning: missing </ul> before </div>
setupTransformData.html:59:1 (setupTransformData.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Han Zhang <zhangh.ustc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangh.ustc@gmail.com"),
               person(given = "Kai",
                      family = "Yu",
                      role = "aut"))
as necessary.
Maintainer: ‘Dao Nguyen <dxnguyen@go.olemiss.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dao",
                      family = "Nguyen",
                      role = c("aut", "cre"),
                      email = "dxnguyen@go.olemiss.edu"),
               person(given = "Xin",
                      family = "Dang",
                      role = "aut"))
as necessary.

The Description field contains
  Nguyen, D., Chen, Y. and Zhang, J., (2018) <arXiv:1809.09793>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘rtgin1.R’
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhadip",
                    family = "Datta",
                    role = c("aut", "cre"),
                    email = "subhadipdatta007@gmail.com")
as necessary.
Maintainer: ‘Anna Klimova <aklimova25@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anna",
                      family = "Klimova",
                      role = c("aut", "cre"),
                      email = "aklimova25@gmail.com"),
               person(given = "Tamas",
                      family = "Rudas",
                      role = "aut"))
as necessary.
Maintainer: ‘Siddhanta Phuyal <siddhantaphuyal7159@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Siddhanta", "Phuyal", "Mamunur", "Rashid", "<mrashid@depauw.edu>", "Jyotirmoy", "Sarkar"),
                      family = "<jsarkar@iupui.edu>",
                      role = "aut",
                      email = "jsarkar@iupui.edu"),
               person(given = "Siddhanta",
                      family = "Phuyal",
                      role = "cre",
                      email = "siddhantaphuyal7159@gmail.com"))
as necessary.
Found the following HTML validation problems:
browse.html:50:1 (browse.Rd:12): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Thierry Onkelinx [aut, cre] (<https://orcid.org/0000-0001-8804-4216>, Research Institute for Nature and Forest (INBO)), Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>, Research Institute for Nature and Forest (INBO)), Peter Desmet [ctb] (<https://orcid.org/0000-0002-8442-8025>, Research Institute for Nature and Forest (INBO)), Els Lommelen [ctb] (<https://orcid.org/0000-0002-3481-5684>, Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph, fnd]’
  Authors@R: ‘Thierry Onkelinx [aut, cre] (ORCID: <https://orcid.org/0000-0001-8804-4216>, affiliation: Research Institute for Nature and Forest (INBO)), Floris Vanderhaeghe [ctb] (ORCID: <https://orcid.org/0000-0002-6378-6229>, affiliation: Research Institute for Nature and Forest (INBO)), Peter Desmet [ctb] (ORCID: <https://orcid.org/0000-0002-8442-8025>, affiliation: Research Institute for Nature and Forest (INBO)), Els Lommelen [ctb] (ORCID: <https://orcid.org/0000-0002-3481-5684>, affiliation: Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph, fnd]’
Found the following HTML validation problems:
find_records.html:59:1 (find_records.Rd:17): Warning: missing </ul> before </div>
set_database.html:54:1 (set_database.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
params.html:57:1 (params.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
is_verbose.html:46:1 (is_verbose.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘James S. Clark <jimclark@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("James", "S."),
                      family = "Clark",
                      role = c("aut", "cre"),
                      email = "jimclark@duke.edu"),
               person(given = "Daniel",
                      family = "Taylor-Rodriquez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gjam.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) gjamCensorY.Rd:27: Lost braces; missing escapes or markup?
    27 |   \item{\code{y}}{n by S matrix updated with censored {values} substituted for
       |                                                       ^
checkRd: (-1) gjamFillMissingTimes.Rd:32: Lost braces
    32 | Missing times in the data occur where there are gaps in \code{timeCol} column of \code{xdata} and the initial time \code{0} for each sequence.  New versions of the data have \code{NA} (\code{xdata}) or prior values with appropriate weight (\code{ydata}).  Missing times are filled in \code{xdata, ydata, edata}, including a time \code{0} which serves as a prior mean for \code{ydata} for time code{1}.  The group and time indices in columns \code{groupCol} and \code{timeCol} of \code{xdata} reference the time for a given time series.  Missing values in the columns \code{groupVars} of \code{xdata} are filled automatically filled in.  This assumes that values for these variables are fixed for the group.  If \code{FILLMEANS}, the missing  values in \code{ydata} are filled with means for the group and given a low weight specified in \code{missingEffort}.
       |                                                                                                                                                                                                                                                                                                                                                                                                              ^
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Mike Beer <mbeer@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahmoud",
                      family = "Ghandi",
                      role = "aut"),
               person(given = "Mike",
                      family = "Beer",
                      role = "cre",
                      email = "mbeer@jhu.edu"))
as necessary.
Found the following HTML validation problems:
Predict.matrix.gKRLS.smooth.html:53:1 (Predict.matrix.gKRLS.smooth.Rd:14): Warning: missing </ul> before </div>
create_sketched_kernel.html:58:1 (create_sketched_kernel.Rd:16): Warning: missing </ul> before </div>
mlr3_gKRLS.html:95:1 (mlr3_gKRLS.Rd:61): Warning: <h5> anchor "Usage" already defined
mlr3_gKRLS.html:115:1 (mlr3_gKRLS.Rd:74): Warning: <h3> anchor "Super-classes" already defined
mlr3_gKRLS.html:121:1 (mlr3_gKRLS.Rd:77): Warning: <h3> anchor "Methods" already defined
mlr3_gKRLS.html:125:1 (mlr3_gKRLS.Rd:78): Warning: <h4> anchor "Public-methods" already defined
mlr3_gKRLS.html:157:1 (mlr3_gKRLS.Rd:102): Warning: <h4> anchor "Method-+E2+80+98new+28+29+E2+80+99" already defined
mlr3_gKRLS.html:163:1 (mlr3_gKRLS.Rd:104): Warning: <h5> anchor "Usage" already defined
mlr3_gKRLS.html:173:1 (mlr3_gKRLS.Rd:112): Warning: <h4> anchor "Method-+E2+80+98clone+28+29+E2+80+99" already defined
mlr3_gKRLS.html:179:1 (mlr3_gKRLS.Rd:114): Warning: <h5> anchor "Usage" already defined
mlr3_gKRLS.html:185:1 (mlr3_gKRLS.Rd:118): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Adam Lund <adam.lund@math.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Lund",
                    role = c("aut", "cre"),
                    email = "adam.lund@math.ku.dk")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glamlasso.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Marina Gomtsyan <marina.gomtsyan@agroparistech.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "M.",
                      family = "Gomtsyan",
                      role = "aut"),
               person(given = "C.",
                      family = "Levy-Leduc",
                      role = "aut"),
               person(given = "S.",
                      family = "Ouadah",
                      role = "aut"),
               person(given = "L.",
                      family = "Sansonnet",
                      role = "aut"),
               person(given = "Marina",
                      family = "Gomtsyan",
                      role = "cre",
                      email = "marina.gomtsyan@agroparistech.fr"))
as necessary.

The Description field contains
  (2020), <arXiv:2007.08623v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Julien Clavel <julien.clavel@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matyas", "A"),
                      family = "Sustik",
                      role = c("aut", "cph")),
               person(given = "Ben",
                      family = "Calderhead",
                      role = c("aut", "cph")),
               person(given = "Julien",
                      family = "Clavel",
                      role = c("com", "ctb", "cre"),
                      email = "julien.clavel@hotmail.fr"))
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stat.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = c("aut", "cre"),
                      email = "tibs@stat.stanford.edu"))
as necessary.
Maintainer: ‘Ingmar Visser <i.visser@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ingmar",
                    family = "Visser",
                    role = c("aut", "cre"),
                    email = "i.visser@uva.nl")
as necessary.
Found the following significant warnings:
  calc_texture.cpp:209:46: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  calc_texture.cpp:209:84: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  calc_texture.cpp:221:41: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  calc_texture.cpp:230:42: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  calc_texture.cpp:230:77: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glcm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following HTML validation problems:
print.gldrm.html:56:1 (print.gldrm.Rd:14): Warning: missing </ul> before </div>
print.gldrmCI.html:55:1 (print.gldrmCI.Rd:14): Warning: missing </ul> before </div>
print.gldrmLRT.html:56:1 (print.gldrmLRT.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Michael Lim <michael626@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lim",
                      role = c("aut", "cre"),
                      email = "michael626@gmail.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
parameter_restriction.html:279:1 (parameter_restriction.Rd:343): Warning: missing </ul> before </div>
Maintainer: ‘David Duffy <David.Duffy@qimrberghofer.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Duffy.", "C", "code", "in", "emgllmfitter", "by", "Andreas", "Borg"),
                      family = "<borg@imbei.uni-mainz.de>",
                      role = "aut",
                      email = "borg@imbei.uni-mainz.de"),
               person(given = "David",
                      family = "Duffy",
                      role = "cre",
                      email = "David.Duffy@qimrberghofer.edu.au"))
as necessary.
Maintainer: ‘Mark W. Donoghoe <markdonoghoe@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chong Wu <wuxx0845@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chong",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wuxx0845@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
checkRd: (-1) NEWS.Rd:16: Lost braces; missing escapes or markup?
    16 |         \item Now \code{AICc == Inf} when {n <= p + 1}.
       |                                           ^
Found the following HTML validation problems:
anova.html:51:1 (anova.Rd:12): Warning: missing </ul> before </div>
coef.html:55:1 (coef.Rd:14): Warning: missing </ul> before </div>
confint.glmcat.html:59:1 (confint.glmcat.Rd:16): Warning: missing </ul> before </div>
control_glmcat.html:54:1 (control_glmcat.Rd:14): Warning: missing </ul> before </div>
logLik.html:51:1 (logLik.Rd:12): Warning: missing </ul> before </div>
nobs.html:51:1 (nobs.Rd:12): Warning: missing </ul> before </div>
plot.html:51:1 (plot.Rd:12): Warning: missing </ul> before </div>
predict.html:63:1 (predict.Rd:20): Warning: missing </ul> before </div>
print.anova.html:55:1 (print.anova.Rd:14): Warning: missing </ul> before </div>
print.summary.glmcat.html:55:1 (print.summary.glmcat.Rd:14): Warning: missing </ul> before </div>
step.html:79:1 (step.Rd:16): Warning: missing </ul> before </div>
terms.html:51:1 (terms.Rd:12): Warning: missing </ul> before </div>
vcov.html:51:1 (vcov.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Sanjay Chaudhuri <sanjay@stat.nus.edu.sg>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) glmc.Rd:232: Escaped LaTeX specials: \&
checkRd: (-1) glmc.Rd:241: Escaped LaTeX specials: \&
checkRd: (-1) glmc.control.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) glmc.control.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) glmc.summaries.Rd:79: Escaped LaTeX specials: \&
Maintainer: ‘Canhong Wen <wencanhong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Canhong",
                      family = "Wen",
                      role = c("aut", "cre"),
                      email = "wencanhong@gmail.com"),
               person(given = "Hao",
                      family = "Lin",
                      role = "aut"),
               person(given = "Xueqin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Matt P. Wand <matt.wand@uts.edu.au>’

The Description field contains
  Johnstone, Ormerod, Wand and Yu (2018) <arXiv:1805.08423v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) glmmSimData.Rd:4: Lost braces; missing escapes or markup?
     4 | \description{Section 4.1.2 of the refence below descries a simulation study with data generated from a probit mixed model with six fixed effects parameters and a bivariate random effects vector having a 2 by 2 symmetric positive definite covariance matrix. The function simulates a data set from this model with 2500 groups and the number of observation in each group being a random draw from {20,21,...,30}.}
       |                                                                                                                                                                                                                                                                                                                                                                                                          ^
Found the following HTML validation problems:
format_data.html:99:1 (format_data.Rd:43): Warning: missing </ul> before </div>
stan_pars.html:77:1 (stan_pars.Rd:31): Warning: missing </ul> before </div>
tidy.html:53:1 (tidy.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Andreas Groll <groll@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Groll",
                    role = c("aut", "cre"),
                    email = "groll@statistik.tu-dortmund.de")
as necessary.
'library' or 'require' calls not declared from:
  ‘MASS’ ‘nlme’
Found the following HTML validation problems:
survival_data.html:78:1 (survival_data.Rd:29): Warning: missing </ul> before </div>
Found the following HTML validation problems:
intDotplot.html:50:1 (intDotplot.Rd:12): Warning: missing </ul> before </div>
print.RRglmGOF.html:55:1 (print.RRglmGOF.Rd:14): Warning: missing </ul> before </div>
print.summary.RRglm.html:74:1 (print.summary.RRglm.Rd:27): Warning: missing </ul> before </div>
print.summary.RRglmerMod.html:74:1 (print.summary.RRglmerMod.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Sigma.html:48:1 (Sigma.Rd:11): Warning: missing </ul> before </div>
X.html:47:1 (X.Rd:11): Warning: missing </ul> before </div>
Y.html:48:1 (Y.Rd:11): Warning: missing </ul> before </div>
Z.html:48:1 (Z.Rd:11): Warning: missing </ul> before </div>
lipcancer_Sigma.html:48:1 (lipcancer_Sigma.Rd:11): Warning: missing </ul> before </div>
lipcancer_X.html:47:1 (lipcancer_X.Rd:11): Warning: missing </ul> before </div>
lipcancer_Y.html:47:1 (lipcancer_Y.Rd:11): Warning: missing </ul> before </div>
lipcancer_Z.html:48:1 (lipcancer_Z.Rd:11): Warning: missing </ul> before </div>
lipcancer_offset.html:47:1 (lipcancer_offset.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-adjustX.html:58:1 (dot-adjustX.Rd:16): Warning: missing </ul> before </div>
dtruncated_nbinom2.html:74:1 (dtruncated_nbinom2.Rd:28): Warning: missing </ul> before </div>
formula.glmmTMB.html:59:1 (formula.glmmTMB.Rd:16): Warning: missing </ul> before </div>
glmmTMB_methods.html:76:1 (glmmTMB_methods.Rd:29): Warning: missing </ul> before </div>
gt_load.html:66:1 (gt_load.Rd:21): Warning: missing </ul> before </div>
mkTMBStruc.html:165:1 (mkTMBStruc.Rd:83): Warning: missing </ul> before </div>
print.VarCorr.glmmTMB.html:69:1 (print.VarCorr.glmmTMB.Rd:24): Warning: missing </ul> before </div>
set_simcodes.html:56:1 (set_simcodes.Rd:14): Warning: missing </ul> before </div>
startParams.html:102:1 (startParams.Rd:46): Warning: missing </ul> before </div>
summary.glmmTMB.html:72:1 (summary.glmmTMB.Rd:27): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cox_obj_function.html:71:1 (cox_obj_function.Rd:23): Warning: missing </ul> before </div>
dev_function.html:59:1 (dev_function.Rd:17): Warning: missing </ul> before </div>
get_eta.html:60:1 (get_eta.Rd:18): Warning: missing </ul> before </div>
mycoxph.html:57:1 (mycoxph.Rd:15): Warning: missing </ul> before </div>
mycoxpred.html:57:1 (mycoxpred.Rd:14): Warning: missing </ul> before </div>
obj_function.html:75:1 (obj_function.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Mee Young Park <meeyoung@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mee", "Young"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "meeyoung@google.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Maintainer: ‘F. William Townes <will.townes@gmail.com>’

The Description field contains
  <arXiv:1907.02647>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘glmpca.Rd’:
    https://doi.org/10.1186/s13059-019-1861-6
Maintainer: ‘Benjamin E. Schlegel <kontakt@benjaminschlegel.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Benjamin", "E."),
                    family = "Schlegel",
                    role = c("aut", "cre"),
                    email = "kontakt@benjaminschlegel.ch")
as necessary.
Maintainer: ‘Peter K. Dunn <pdunn2@usc.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "K."),
                      family = "Dunn",
                      role = c("cre", "aut"),
                      email = "pdunn2@usc.edu.au"),
               person(given = c("Gordon", "K."),
                      family = "Smyth",
                      role = "aut"))
as necessary.
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                            ^
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                                                ^
checkRd: (-1) galapagos.Rd:4: Lost braces
     4 | \title{{Gal\'{a}pagos} Island species data}
       |              ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                      ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |    ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |          ^
checkRd: (-1) galapagos.Rd:44: Lost braces
    44 |   Species number and endemism: The {Gal\'{a}pagos} Archipelago revisited.
       |                                          ^
Maintainer: ‘Greg McMahan <gmcmacran@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "McMahan",
                    role = c("aut", "cre"),
                    email = "gmcmacran@gmail.com")
as necessary.
Found the following HTML validation problems:
setup_lambda.html:68:1 (setup_lambda.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
glance.glmgee.html:51:1 (glance.glmgee.Rd:12): Warning: missing </ul> before </div>
tidy.glmgee.html:74:1 (tidy.glmgee.Rd:27): Warning: missing </ul> before </div>
checkRd: (-1) coef.glmulti.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) consensus.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) getfit.Rd:14: Lost braces
    14 |   \item{object}{A fitted model object, of class \code{glm}, \code{lm} or code{glm.nb}}
       |                                                                              ^
checkRd: (-1) getfit.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-class.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-methods.Rd:14: Lost braces
    14 | code{glmulti} finds what are the \code{n} best models (the confidence set of models) among all possible models (the candidate set, as specified by the user).
       |     ^
checkRd: (-1) glmulti.Rd:99: Escaped LaTeX specials: \&
checkRd: (-1) summary.glmulti.Rd:72: Escaped LaTeX specials: \&
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ying",
                      family = "Nan",
                      role = "aut",
                      email = "nanx0006@gmail.com"),
               person(given = "Yanjia",
                      family = "Yu",
                      role = "aut",
                      email = "yuxxx748@umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuhong",
                      family = "Yang",
                      role = "aut",
                      email = "yyang@stat.umn.edu"))
as necessary.
Maintainer: ‘Zuguang Gu <z.gu@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zuguang",
                    family = "Gu",
                    role = c("aut", "cre"),
                    email = "z.gu@dkfz.de")
as necessary.
Maintainer: ‘Katharine Mullen <katharine.mullen@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Katharine",
                    family = "Mullen",
                    role = c("aut", "cre"),
                    email = "katharine.mullen@stat.ucla.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Found the following HTML validation problems:
cleanup.Globals.html:55:1 (cleanup.Globals.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Mary E. Savino <mary.savino@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M.", "E."),
                      family = "Savino",
                      role = "aut"),
               person(given = c("Mary", "E."),
                      family = "Savino",
                      role = "cre",
                      email = "mary.savino@outlook.fr"))
as necessary.

The Description field contains
  Lévy-Leduc, C. (2023), <arXiv:2306.00686>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
knit_print.gloss.html:51:1 (knit_print.gloss.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Krzysztof Bartoszek <krzbar@protonmail.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Krzysztof",
                    family = "Bartoszek",
                    role = c("aut", "cre"),
                    email = "krzbar@protonmail.ch")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sergio Contador <scontador@ucm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Contador",
                    role = c("aut", "cre"),
                    email = "scontador@ucm.es")
as necessary.
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fan",
                      family = "Yang",
                      role = "aut"),
               person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = "Lin",
                      family = "Chen",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
accessors.html:60:1 (accessors.Rd:27): Warning: missing </ul> before </div>
as.character.mime.html:55:1 (as.character.mime.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) rtheta.Rd:50-76: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Osman Dag <osman.dag@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osman",
                      family = "Dag",
                      role = c("aut", "cre"),
                      email = "osman.dag@outlook.com"),
               person(given = "Erdem",
                      family = "Karabulut",
                      role = "aut"),
               person(given = "Reha",
                      family = "Alpar",
                      role = "aut"),
               person(given = "Merve",
                      family = "Kasikci",
                      role = "ctb"))
as necessary.
Maintainer: ‘Osman Dag <osman.dag@hacettepe.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osman",
                      family = "Dag",
                      role = c("aut", "cre"),
                      email = "osman.dag@hacettepe.edu.tr"),
               person(given = "Ceylan",
                      family = "Yozgatligil",
                      role = "aut"))
as necessary.
Maintainer: ‘Manuel Villacorta Tilve <mvt.oviedo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Manuel", "Villacorta"),
                    family = "Tilve",
                    role = c("aut", "cre"),
                    email = "mvt.oviedo@gmail.com")
as necessary.
Found the following HTML validation problems:
fun.svd_1.html:50:1 (fun.svd_1.Rd:12): Warning: missing </ul> before </div>
fun.svd_2.html:50:1 (fun.svd_2.Rd:12): Warning: missing </ul> before </div>
fun.svd_3.html:50:1 (fun.svd_3.Rd:12): Warning: missing </ul> before </div>
predict.neurona.html:51:1 (predict.neurona.Rd:12): Warning: missing </ul> before </div>
predict.svd.html:51:1 (predict.svd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Herve Cardot <herve.cardot@u-bourgogne.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Herve",
                    family = "Cardot",
                    role = c("aut", "cre"),
                    email = "herve.cardot@u-bourgogne.fr")
as necessary.
Maintainer: ‘Andrea Martino <andrea.martino@polimi.it>’

The Description field contains
  Ieva, F. and Paganoni A. M. (2017) <arXiv:1708.00386>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Gmisc-deprecated.html:46:1 (Gmisc-deprecated.Rd:12): Warning: missing </ul> before </div>
htmlTable_latex.html:61:1 (htmlTable_latex.Rd:21): Warning: missing </ul> before </div>
prPasteVec.html:47:1 (prPasteVec.Rd:10): Warning: missing </ul> before </div>
prTcPlotArrows.html:109:1 (prTcPlotArrows.Rd:49): Warning: missing </ul> before </div>
prTpGetBoxSizedTextGrob.html:73:1 (prTpGetBoxSizedTextGrob.Rd:27): Warning: missing </ul> before </div>
print.Gmisc_list_of_boxes.html:52:1 (print.Gmisc_list_of_boxes.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Charlie Wusuo Liu <liuwusuo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Charlie", "Wusuo"),
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwusuo@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMKMcharlie.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Andreas Groll <groll@mathematik.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Groll",
                    role = c("aut", "cre"),
                    email = "groll@mathematik.uni-muenchen.de")
as necessary.
Found the following HTML validation problems:
paraextract.html:46:1 (paraextract.Rd:11): Warning: missing </ul> before </div>
predict.html:46:1 (predict.Rd:11): Warning: missing </ul> before </div>
summary.html:46:1 (summary.Rd:11): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:137:1 (inst/NEWS.Rd:58): Warning: missing </ul> before </div>
NEWS.html:46:1 (inst/NEWS.Rd:16): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:76:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:91:1 (inst/NEWS.Rd:42): Warning: <h4> anchor "FIXED-BUGS" already defined
NEWS.html:111:1 (inst/NEWS.Rd:50): Warning: <h4> anchor "NEW-FEATURES" already defined
Found the following HTML validation problems:
gFormula.html:81:1 (gFormula.Rd:31): Warning: missing </ul> before </div>
Found the following HTML validation problems:
mergeLists.html:50:1 (mergeLists.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Yaofang Hu <yaofang.hu@u.nus.edu>’

The Description field contains
  <arXiv:2006.03284>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘1-pitch-normalize-value.R’
Author field differs from that derived from Authors@R
  Author:    ‘Jan Philipp Dietrich [aut, cre] (Potsdam Institute for Climate Impact Research, <https://orcid.org/0000-0002-4309-6431>), David Klein [aut] (Potsdam Institute for Climate Impact Research), Anastasis Giannousakis [aut], Felicitas Beier [aut] (Potsdam Institute for Climate Impact Research), Johannes Koch [aut] (Potsdam Institute for Climate Impact Research), Lavinia Baumstark [aut] (Potsdam Institute for Climate Impact Research), Mika Pflüger [aut], Oliver Richters [aut] (Potsdam Institute for Climate Impact Research)’
  Authors@R: ‘Jan Philipp Dietrich [aut, cre] (affiliation: Potsdam Institute for Climate Impact Research, ORCID: <https://orcid.org/0000-0002-4309-6431>), David Klein [aut] (affiliation: Potsdam Institute for Climate Impact Research), Anastasis Giannousakis [aut], Felicitas Beier [aut] (affiliation: Potsdam Institute for Climate Impact Research), Johannes Koch [aut] (affiliation: Potsdam Institute for Climate Impact Research), Lavinia Baumstark [aut] (affiliation: Potsdam Institute for Climate Impact Research), Mika Pflüger [aut], Oliver Richters [aut] (affiliation: Potsdam Institute for Climate Impact Research)’
Found the following HTML validation problems:
print.hypotest.html:56:1 (print.hypotest.Rd:14): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:291:1 (inst/NEWS.Rd:135): Warning: missing </ul> before </div>
NEWS.html:43:1 (inst/NEWS.Rd:15): Warning: <h4> anchor "NEW" already defined
NEWS.html:81:1 (inst/NEWS.Rd:33): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:128:1 (inst/NEWS.Rd:58): Warning: <h3> anchor "CHANGES-IN-+E2+80+98GNE+E2+80+99-VERSION-0.99-2" already defined
NEWS.html:132:1 (inst/NEWS.Rd:59): Warning: <h4> anchor "NOTE-FIXES" already defined
NEWS.html:150:1 (inst/NEWS.Rd:68): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:168:1 (inst/NEWS.Rd:77): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:189:1 (inst/NEWS.Rd:87): Warning: <h4> anchor "NEW" already defined
NEWS.html:249:1 (inst/NEWS.Rd:116): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:261:1 (inst/NEWS.Rd:122): Warning: <h4> anchor "DEFUNC" already defined
NEWS.html:277:1 (inst/NEWS.Rd:131): Warning: <h4> anchor "NEW" already defined
Maintainer: ‘Ali Saeb <ali.saeb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ali",
                    family = "Saeb",
                    role = c("aut", "cre"),
                    email = "ali.saeb@gmail.com")
as necessary.
Maintainer: ‘Maryclare Griffin <maryclaregriffin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maryclare",
                    family = "Griffin",
                    role = c("aut", "cre"),
                    email = "maryclaregriffin@gmail.com")
as necessary.
Found the following HTML validation problems:
gnrs_core.html:63:1 (gnrs_core.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Annarosa Quarello <quarello.annarosa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annarosa",
                      family = "Quarello",
                      role = c("aut", "cre"),
                      email = "quarello.annarosa@gmail.com"),
               person(given = "Emilie",
                      family = "Lebarbier",
                      role = "aut"),
               person(given = "Olivier",
                      family = "Bock",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.04683>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Karoly Antal <antalk2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karoly",
                      family = "Antal.",
                      role = "aut",
                      email = "antalk2@gmail.com"),
               person(given = "Karoly",
                      family = "Antal",
                      role = "cre",
                      email = "antalk2@gmail.com"))
as necessary.
Found the following HTML validation problems:
msg.html:47:1 (msg.Rd:11): Warning: missing </ul> before </div>
validateMatrices.html:91:1 (validateMatrices.Rd:43): Warning: missing </ul> before </div>
Found the following HTML validation problems:
goat_nulldistributions.html:47:1 (goat_nulldistributions.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
add_equation_single.html:58:1 (add_equation_single.Rd:16): Warning: missing </ul> before </div>
add_variable_single.html:58:1 (add_variable_single.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.goftime.html:53:1 (print.goftime.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>’

The BugReports field in DESCRIPTION has
  https://github.com/egarpor/goffda
which should likely be
  https://github.com/egarpor/goffda/issues
instead.
Maintainer: ‘Bruno Ebner <bruno.ebner@kit.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘AD.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘BE.Rd’:
    https://doi.org/10.1007/s00184-019-00708-7
  File ‘CM.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘HME1.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘HME2.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘KS.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘WA.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘gamma_est.Rd’:
    https://doi.org/10.1080/00949650108812100
  File ‘test.AD.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.BE.Rd’:
    https://doi.org/10.1007/s00184-019-00708-7
  File ‘test.CM.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.HME1.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.HME2.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.KS.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
  File ‘test.WA.Rd’:
    https://doi.org/10.1080/03610926.2010.542851
Maintainer: ‘Jiwoong Kim <jwboys26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiwoong",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jwboys26atgmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GofKmt.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Elizabeth Gonzalez-Estrada <egonzalez@colpos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elizabeth",
                      family = "Gonzalez-Estrada",
                      role = c("aut", "cre"),
                      email = "egonzalez@colpos.mx"),
               person(given = c("Jose", "A."),
                      family = "Villasenor-Alva",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cauchy.test.Rd’:
    https://doi.org/10.1080/00949655.2017.1404604
  File ‘de.test.Rd’:
    https://doi.org/10.1016/j.spl.2016.07.003
  File ‘ev.test.Rd’:
    https://doi.org/10.1080/00949655.2017.1404604
    https://doi.org/10.1080/03610910903528293
  File ‘gamma.fit.Rd’:
    http://dx.doi.org/10.1016/j.spl.2014.10.001
  File ‘gamma.test.Rd’:
    http://dx.doi.org/10.1016/j.spl.2014.10.001
  File ‘gp.fit.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.04.001
  File ‘gp.test.Rd’:
    http://dx.doi.org/10.1016/j.csda.2009.04.001
  File ‘ig.test.Rd’:
    http://dx.doi.org/10.1016/j.spl.2015.06.017
    https://doi.org/10.1007/s13571-017-0148-8
  File ‘mvShapiro.Test.Rd’:
    http://dx.doi.org/10.1080/03610920802474465
  File ‘normal.Rd’:
    http://dx.doi.org/10.1080/03610918.2013.810261
  File ‘sn.Rd’:
    https://doi.org/10.1080/00949655.2019.1658763
checkRd: (-1) BVDWSTOXX.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:16: Escaped LaTeX specials: \& \&
checkRd: (-1) BVDWSTOXX.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:37: Escaped LaTeX specials: \&
Found the following HTML validation problems:
addins.html:62:1 (addins.Rd:32): Warning: missing </ul> before </div>
Maintainer: ‘Michael B. Sohn <msohn@mail.med.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "B."),
                    family = "Sohn",
                    role = c("aut", "cre"),
                    email = "msohn@mail.med.upenn.edu")
as necessary.
Found the following HTML validation problems:
gomms.plot.html:64:1 (gomms.plot.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Kalifa Manjang <kalifamanjang1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kalifa",
                    family = "Manjang",
                    role = c("aut", "cre"),
                    email = "kalifamanjang1@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Mark Padgham [aut, cre] (<https://orcid.org/0000-0003-2172-5265>), Ascent Digital Services UK Limited [cph] (MangoTheCat), Karina Marks [aut] (KarinaMarks), Daniel de Bortoli [aut] (ddbortoli), Gabor Csardi [aut], Hannah Frick [aut], Owen Jones [aut] (owenjonesuob), Hannah Alexander [aut], Ana Simmons [ctb] (anasimmons), Fabian Scheipl [ctb] (fabian-s)’
  Authors@R: ‘Mark Padgham [aut, cre] (ORCID: <https://orcid.org/0000-0003-2172-5265>), Ascent Digital Services UK Limited [cph] (GitHub: MangoTheCat), Karina Marks [aut] (GitHub: KarinaMarks), Daniel de Bortoli [aut] (GitHub: ddbortoli), Gabor Csardi [aut], Hannah Frick [aut], Owen Jones [aut] (GitHub: owenjonesuob), Hannah Alexander [aut], Ana Simmons [ctb] (GitHub: anasimmons), Fabian Scheipl [ctb] (GitHub: fabian-s)’
Found the following HTML validation problems:
export_json.html:54:1 (export_json.Rd:14): Warning: missing </ul> before </div>
get_marker.html:50:1 (get_marker.Rd:12): Warning: missing </ul> before </div>
make_rcmd_check.html:74:1 (make_rcmd_check.Rd:28): Warning: missing </ul> before </div>
print.goodPractice.html:55:1 (print.goodPractice.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
parse_ga_account_summary.html:46:1 (parse_ga_account_summary.Rd:10): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gar_auth.Rd: Token-class
  gar_auto_auth.Rd: Token-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
checkGoogleAPIError.html:46:1 (checkGoogleAPIError.Rd:10): Warning: missing </ul> before </div>
gar_scope_config.html:46:1 (gar_scope_config.Rd:10): Warning: missing </ul> before </div>
gar_token_info.html:46:1 (gar_token_info.Rd:10): Warning: missing </ul> before </div>
retryRequest.html:46:1 (retryRequest.Rd:10): Warning: missing </ul> before </div>
skip_if_no_env_auth.html:46:1 (skip_if_no_env_auth.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Mark Edmondson <r@sunholo.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
drive_empty_trash.html:51:1 (drive_empty_trash.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Schmeh <danielschmeh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Schmeh",
                    role = c("aut", "cre"),
                    email = "danielschmeh@gmail.com")
as necessary.
Found the following HTML validation problems:
gl_talk_languages.html:46:1 (gl_talk_languages.Rd:10): Warning: missing </ul> before </div>
gl_talk_shiny.html:115:1 (gl_talk_shiny.Rd:50): Warning: missing </ul> before </div>
my_message.html:50:1 (my_message.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘George Vega Yon <g.vegayon@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: publicdata.google.com
    From: man/dspl.Rd
Found the following HTML validation problems:
googler_.html:86:1 (googler_.Rd:32): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gt_make_grid.Rd’
checkRd: (-1) google_find_place.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_find_place.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_find_place.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_map.Rd:54: Lost braces; missing escapes or markup?
    54 | of `{sf}` objects).}
       |     ^
Found the following HTML validation problems:
add_circles.html:224:1 (add_circles.Rd:135): Warning: <h3> anchor "palette" already defined
add_dragdrop.html:47:1 (add_dragdrop.Rd:10): Warning: missing </ul> before </div>
add_polygons.html:225:1 (add_polygons.Rd:167): Warning: <h3> anchor "palette" already defined
add_polylines.html:209:1 (add_polylines.Rd:134): Warning: <h3> anchor "palette" already defined
add_rectangles.html:222:1 (add_rectangles.Rd:133): Warning: <h3> anchor "palette" already defined
clear_bounds.html:46:1 (clear_bounds.Rd:10): Warning: missing </ul> before </div>
clear_search.html:46:1 (clear_search.Rd:10): Warning: missing </ul> before </div>
google_map_view.html:57:1 (google_map_view.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Wencke Walter <wencke.walter@arcor.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘GORCure-package.Rd’:
    \keyword{ package, linear transformation model, mi [TRUNCATED]
Found the following HTML validation problems:
plot.predict.GORMC.html:57:1 (plot.predict.GORMC.Rd:18): Warning: missing </ul> before </div>
summary.GORMC.html:59:1 (summary.GORMC.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
gotop-dependencies.html:46:1 (gotop-dependencies.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘collections.R’ ‘packages.R’ ‘published.R’ ‘related.R’ ‘utils.R’
Found the following HTML validation problems:
next_req.html:50:1 (next_req.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Yuichiro Otani <yuichiro@otani.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuichiro",
                    family = "Otani",
                    role = c("aut", "cre"),
                    email = "yuichiro@otani.co")
as necessary.

The Description field contains
  (http://statdb.nstac.go.jp/)
Please enclose URLs in angle brackets (<...>).
Malformed Description field: should contain one or more complete sentences.
Found the following HTML validation problems:
gp-method.html:47:1 (gp-method.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
GPModel_shared_params.html:783:1 (GPModel_shared_params.Rd:421): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
  Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Maintainer: ‘Evandro Konzen <gpfda.r@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jian", "Qing"),
                      family = "Shi",
                      role = "aut"),
               person(given = "Yafeng",
                      family = "Cheng",
                      role = "aut"),
               person(given = "Evandro",
                      family = "Konzen",
                      role = c("aut", "cre"),
                      email = "gpfda.r@gmail.com"))
as necessary.
Found the following HTML validation problems:
condition_number.html:46:1 (condition_number.Rd:10): Warning: missing </ul> before </div>
expit.html:48:1 (expit.Rd:13): Warning: missing </ul> before </div>
fisher_scoring.html:73:1 (fisher_scoring.Rd:27): Warning: missing </ul> before </div>
get_linkfun.html:46:1 (get_linkfun.Rd:10): Warning: missing </ul> before </div>
get_penalty.html:58:1 (get_penalty.Rd:16): Warning: missing </ul> before </div>
get_start_parms.html:58:1 (get_start_parms.Rd:16): Warning: missing </ul> before </div>
pen_hi.html:58:1 (pen_hi.Rd:20): Warning: missing </ul> before </div>
pen_lo.html:58:1 (pen_lo.Rd:20): Warning: missing </ul> before </div>
pen_loglo.html:58:1 (pen_loglo.Rd:20): Warning: missing </ul> before </div>
sph_grad_xyz.html:51:1 (sph_grad_xyz.Rd:13): Warning: missing </ul> before </div>
summary.GpGp_fit.html:52:1 (summary.GpGp_fit.Rd:13): Warning: missing </ul> before </div>
test_likelihood_object.html:46:1 (test_likelihood_object.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.
Maintainer: ‘Xiang Li <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiang",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "ynaulx@gmail.com")
as necessary.
Maintainer: ‘Marlene Mueller <marlene.mueller@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Mueller",
                    role = c("aut", "cre"),
                    email = "marlene.mueller@gmx.de")
as necessary.
Found the following HTML validation problems:
add_sim_bound.html:70:1 (add_sim_bound.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Cyprien Mbogning <cyprien.mbogning@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cyprien",
                      family = "Mbogning",
                      role = c("aut", "cre"),
                      email = "cyprien.mbogning@inserm.fr"),
               person(given = "Wilson",
                      family = "Toussile",
                      role = "aut"))
as necessary.
Maintainer: ‘Arne B. Gjuvsland <arne.gjuvsland@nmbu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Arne", "B."),
                      family = "Gjuvsland",
                      role = c("aut", "cre"),
                      email = "arne.gjuvsland@nmbu.no"),
               person(given = "Yunpeng",
                      family = "Wang",
                      role = "aut",
                      email = "yunpeng.wng@gmail.com"))
as necessary.
419,427d418
< Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
< ℹ Please use tidy evaluation idioms with `aes()`.
< ℹ See also `vignette("ggplot2-in-packages")` for more information.
< ℹ The deprecated feature was likely used in the gpmap package.
<   Please report the issue to the authors.
< Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
< ℹ Please use `linewidth` instead.
< ℹ The deprecated feature was likely used in the gpmap package.
<   Please report the issue to the authors.
Running ‘genotype_test.R’ [1s/1s]
  Comparing ‘genotype_test.Rout’ to ‘genotype_test.Rout.save’ ... OK
  Running ‘test_code_example.R’ [3s/3s]
  Comparing ‘test_code_example.Rout’ to ‘test_code_example.Rout.save’ ...27,36d26
< Warning messages:
< 1: `aes_string()` was deprecated in ggplot2 3.0.0.
< ℹ Please use tidy evaluation idioms with `aes()`.
< ℹ See also `vignette("ggplot2-in-packages")` for more information.
< ℹ The deprecated feature was likely used in the gpmap package.
<   Please report the issue to the authors. 
< 2: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
< ℹ Please use `linewidth` instead.
< ℹ The deprecated feature was likely used in the gpmap package.
<   Please report the issue to the authors.
Maintainer: ‘Ramin Bostanabad <bostanabad@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramin",
                      family = "Bostanabad",
                      role = c("aut", "cre"),
                      email = "bostanabad@u.northwestern.edu"),
               person(given = "Tucker",
                      family = "Kearney",
                      role = "aut"),
               person(given = "Siyo",
                      family = "Tao",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Apley",
                      role = "aut"),
               person(given = "Wei",
                      family = "Chen",
                      role = "aut",
                      comment = "IDEAL"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GPM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) Auxil.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Auxil.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Auxil.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Auxil.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Predict.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Predict.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Predict.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
'LinkingTo' field is unused: package has no 'src' directory
Running ‘testthat.R’ [260s/308s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  > library(gppm)
  > 
  > test_check("gppm")
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78892,188.845]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78892,188.845]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78892,188.845]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78892,188.845]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.79006,188.851]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78778,188.84]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78672,188.909]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.79111,188.782]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78997,189.018]
  
  [0.0101107,0.0101107,0.0101107,0.0101107,0.0101107,6.78786,188.673]
  
  [0.0111107,0.0111107,0.0111107,0.0111107,0.0111107,6.78992,188.846]
  
  [0.00911071,0.00911071,0.00911071,0.00911071,0.00911071,6.78792,188.844]
  
  [ FAIL 2 | WARN 0 | SKIP 6 | PASS 1808 ]
  
  ══ Skipped tests (6) ═══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-cv.R:26:3', 'test-fit.R:17:3', 'test-fit.R:25:3',
    'test-predict.R:21:3', 'test-predict.R:60:3', 'test-predict.R:69:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plotLong.R:4:3'): simple ─────────────────────────────────────
  class(thePlot) not identical to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  ── Failure ('test-plotLong.R:9:3'): select all arguments ───────────────────────
  class(thePlot) not identical to c("gg", "ggplot").
  Lengths differ: 5 is not 2
  
  [ FAIL 2 | WARN 0 | SKIP 6 | PASS 1808 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Ali Ghanbari <a.ghanbari541@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Parinaz",
                      family = "Mehdipour",
                      role = "aut",
                      email = "mehdipoor.p@gmail.com"),
               person(given = "Ali",
                      family = "Ghanbari",
                      role = c("cre", "aut"),
                      email = "a.ghanbari541@gmail.com"),
               person(given = "Iman",
                      family = "Navidi",
                      role = "aut",
                      email = "iman.navidi.1988@gmail.com"),
               person(given = "Farshad",
                      family = "Farzadfar",
                      role = "cph",
                      email = "farzadfar3@yahoo.com"))
as necessary.
Maintainer: ‘Liis Kolberg <liis.kolberg@ut.ee>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Liis",
                      family = "Kolberg",
                      role = c("aut", "cre"),
                      email = "liis.kolberg@ut.ee"),
               person(given = "Uku",
                      family = "Raudvere",
                      role = "aut",
                      email = "uku.raudvere@ut.ee"))
as necessary.
Found the following HTML validation problems:
set_base_url.html:47:1 (set_base_url.Rd:10): Warning: missing </ul> before </div>
set_tls_version.html:46:1 (set_tls_version.Rd:10): Warning: missing </ul> before </div>
set_user_agent.html:51:1 (set_user_agent.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ivan Kuzmin <ivan.kuzmin@ut.ee>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juri",
                      family = "Reimand",
                      role = "aut",
                      email = "juri.reimand@ut.ee"),
               person(given = "Raivo",
                      family = "Kolde",
                      role = "aut",
                      email = "rkolde@gmail.com"),
               person(given = "Tambet",
                      family = "Arak",
                      role = "aut",
                      email = "tambet.arak@gmail.com"),
               person(given = "Ivan",
                      family = "Kuzmin",
                      role = "cre",
                      email = "ivan.kuzmin@ut.ee"))
as necessary.
Found the following HTML validation problems:
set_base_url.html:47:1 (set_base_url.Rd:10): Warning: missing </ul> before </div>
set_tls_version.html:46:1 (set_tls_version.Rd:10): Warning: missing </ul> before </div>
set_user_agent.html:51:1 (set_user_agent.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Justin Clapp <justin.clapp@wyo.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Clapp",
                      role = "aut"),
               person(given = "J.",
                      family = "G.",
                      role = "aut"),
               person(given = "Justin",
                      family = "Clapp",
                      role = "cre",
                      email = "justin.clapp@wyo.gov"))
as necessary.
Maintainer: ‘Zheyuan Li <zheyuan.li@bath.edu>’

The Description field contains
  difference penalty, proposed by Li and Cao (2022) <arXiv:2201.06808>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
run_mcmc.html:168:1 (run_mcmc.Rd:84): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘service-cohere.R’
Found the following HTML validation problems:
OpenaiStreamParser.html:185:1 (OpenaiStreamParser.Rd:103): Warning: missing </ul> before </div>
OpenaiStreamParser.html:133:1 (OpenaiStreamParser.Rd:75): Warning: <h5> anchor "Usage" already defined
OpenaiStreamParser.html:139:1 (OpenaiStreamParser.Rd:79): Warning: <h5> anchor "Arguments" already defined
OpenaiStreamParser.html:162:1 (OpenaiStreamParser.Rd:92): Warning: <h5> anchor "Usage" already defined
OpenaiStreamParser.html:168:1 (OpenaiStreamParser.Rd:96): Warning: <h5> anchor "Arguments" already defined
mod_app_server.html:50:1 (mod_app_server.Rd:12): Warning: missing </ul> before </div>
mod_app_ui.html:50:1 (mod_app_ui.Rd:12): Warning: missing </ul> before </div>
mod_chat_server.html:64:1 (mod_chat_server.Rd:22): Warning: missing </ul> before </div>
mod_chat_ui.html:50:1 (mod_chat_ui.Rd:12): Warning: missing </ul> before </div>
streamingMessage-shiny.html:68:1 (streamingMessage-shiny.Rd:25): Warning: missing </ul> before </div>
streamingMessage.html:62:1 (streamingMessage.Rd:21): Warning: missing </ul> before </div>
welcomeMessage-shiny.html:68:1 (welcomeMessage-shiny.Rd:25): Warning: missing </ul> before </div>
welcomeMessage.html:67:1 (welcomeMessage.Rd:24): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LR_GradientConjugate_gpumatrix.Rd: Matrix-class
  gpu.matrix-class.Rd: Matrix-class
  gpu.matrix.Rd: Matrix-class
  matrix-product.Rd: %&%
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ruoyong Xu <ruoyong.xu@mail.utoronto.ca>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#cdeterman_gpuR:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
  URL: https://app.gitter.im/#/room/#cdeterman_gpuR_Tested_GPUs:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
  URL: https://app.gitter.im/#/room/#cdeterman_gpuR_development:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
  URL: https://app.gitter.im/#/room/#cdeterman_gpuR_general:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment

The BugReports field in DESCRIPTION has
  https://github.com/cdeterman/gpuR/issues/new
which should likely be
  https://github.com/cdeterman/gpuR/issues/new/issues
instead.
Found the following HTML validation problems:
GP.csh.html:62:1 (GP.csh.Rd:22): Warning: missing </ul> before </div>
GP.un.html:62:1 (GP.un.Rd:22): Warning: missing </ul> before </div>
VP.CP.ZP.un.html:62:1 (VP.CP.ZP.un.Rd:22): Warning: missing </ul> before </div>
print.html:57:1 (print.Rd:20): Warning: missing </ul> before </div>
rGP.un.html:62:1 (rGP.un.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Marcin Jurek <marcinjurek1988@gmail.com>’

The Description field contains
  more detail in Katzfuss and Guinness (2017) <arXiv:1708.06302>. Package
  decomposition (IC0), based on Schaefer et al. (2019) <arXiv:1706.02205>
  and MaxMin ordering proposed in Guinness (2018) <arXiv:1609.05372>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hannah O. Ajoge <ohuajo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hannah", "O."),
                    family = "Ajoge",
                    role = c("aut", "cre"),
                    email = "ohuajo@gmail.com")
as necessary.
Maintainer: ‘Mayooran Thevaraja <mayooran@eng.jfn.ac.lk>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘prob_accept.Rd’:
    https://doi.org/10.1109/ICC.2006.255040
    https://doi.org/10.1016/j.foodcont.2013.02.021
  File ‘prob_contaminant.Rd’:
    https://doi.org/10.2307/1427041
Maintainer: ‘Sen Zhao <sen-zhao@sen-zhao.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sen",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "sen-zhao@sen-zhao.com")
as necessary.
Maintainer: ‘Leif Johnson <leif.t.johnson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Leif",
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "leif.t.johnson@gmail.com")
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) grade-package.Rd:51-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:58-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:72-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:79-81: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
calcGradesForGradescope.html:63:1 (calcGradesForGradescope.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Brendan Matthew Galdo <Brendan.m.galdo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/bmgaldo/graDiEnt
which should likely be
  https://github.com/bmgaldo/graDiEnt/issues
instead.
'library' or 'require' call not declared from: ‘Rgraphviz’
Found the following HTML validation problems:
generics.html:80:1 (generics.Rd:45): Warning: missing </ul> before </div>
simplify_query.html:47:1 (simplify_query.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
extract.html:65:1 (extract.Rd:26): Warning: missing </ul> before </div>
grainscape-defunct.html:46:1 (grainscape-defunct.Rd:10): Warning: missing </ul> before </div>
show.html:54:1 (show.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Farzad Noorian <farzad.noorian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Farzad",
                      family = "Noorian",
                      role = c("aut", "cre"),
                      email = "farzad.noorian@gmail.com"),
               person(given = c("Anthony", "Mihirana"),
                      family = "de Silva",
                      role = "aut"))
as necessary.
Maintainer: ‘Iago Giné-Vázquez <iago.gin-vaz@protonmail.com>’

The Description field contains
  <arXiv:2106.14875> [math.NA] 28 Jun 2021, by Irfan Muhammad [School of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Matteo Farne' <matteo.farne2@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matteo",
                      family = "Farne'",
                      role = c("aut", "cre"),
                      email = "matteo.farne2@unibo.it"),
               person(given = "Angela",
                      family = "Montanari",
                      role = "aut",
                      email = "angela.montanari@unibo.it"))
as necessary.

The Description field contains
  Farne' and Montanari, 2018 <arXiv:1803.00374>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) Granger.inference.difference.Rd:65: Lost braces; missing escapes or markup?
    65 |         least one root larger than one) on bootstrapped \verb{x} and {y}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:68: Lost braces; missing escapes or markup?
    68 |         least one root larger than one) on bootstrapped \verb{x} and {z}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:71: Lost braces; missing escapes or markup?
    71 |         least one root larger than one) on bootstrapped \verb{x}, \verb{y} and {z}.
       |                                                                                ^
Maintainer: ‘Michael Klein <michael.klein@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Klein",
                    role = c("aut", "cre"),
                    email = "michael.klein@yale.edu")
as necessary.
Maintainer: ‘Pratheesh P. Gopinath <grapescoa@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Pratheesh P. Gopinath [aut, cre] (<https://orcid.org/0000-0003-3290-0436>), Rajender Parsad [aut], Brigit Joseph [aut], Adarsh. V.S. [aut], Kerala Agricultural University [cph] (http://www.kau.in/)’
  Authors@R: ‘Pratheesh P. Gopinath [aut, cre] (ORCID: <https://orcid.org/0000-0003-3290-0436>), Rajender Parsad [aut], Brigit Joseph [aut], Adarsh. V.S. [aut], Kerala Agricultural University [cph] (url: http://www.kau.in/)’
checkRd: (-1) corrApp.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) crdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) descApp.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) layoutApp.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) rbdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) ttApp.Rd:43: Escaped LaTeX specials: \&
Maintainer: ‘Paul Savary <psavary@protonmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tabea Rebafka <tabea.rebafka@sorbonne-universite.fr>’

The Description field contains
  algorithm" by T. Rebafka (2022) <arXiv:2211.02314>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Maxime HERVE <maxime.herve@univ-rennes1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maxime",
                    family = "HERVE",
                    role = c("aut", "cre"),
                    email = "maxime.herve@univ-rennes1.fr")
as necessary.
Found the following HTML validation problems:
gf_cache.html:47:1 (gf_cache.Rd:11): Warning: missing </ul> before </div>
gf_degrees.html:47:1 (gf_degrees.Rd:11): Warning: missing </ul> before </div>
gf_edge_columns.html:47:1 (gf_edge_columns.Rd:11): Warning: missing </ul> before </div>
gf_edges.html:47:1 (gf_edges.Rd:11): Warning: missing </ul> before </div>
gf_in_degrees.html:47:1 (gf_in_degrees.Rd:11): Warning: missing </ul> before </div>
gf_out_degrees.html:47:1 (gf_out_degrees.Rd:11): Warning: missing </ul> before </div>
gf_persist.html:53:1 (gf_persist.Rd:15): Warning: missing </ul> before </div>
gf_register.html:47:1 (gf_register.Rd:11): Warning: missing </ul> before </div>
gf_triplets.html:47:1 (gf_triplets.Rd:11): Warning: missing </ul> before </div>
gf_unpersist.html:51:1 (gf_unpersist.Rd:13): Warning: missing </ul> before </div>
gf_vertex_columns.html:47:1 (gf_vertex_columns.Rd:11): Warning: missing </ul> before </div>
gf_vertices.html:47:1 (gf_vertices.Rd:11): Warning: missing </ul> before </div>
spark_graphframe.html:53:1 (spark_graphframe.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
gh_bbox.html:52:1 (gh_bbox.Rd:16): Warning: missing </ul> before </div>
gh_points.html:46:1 (gh_points.Rd:10): Warning: missing </ul> before </div>
gh_spt_columns.html:69:1 (gh_spt_columns.Rd:23): Warning: missing </ul> before </div>
gh_time_distance.html:46:1 (gh_time_distance.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Zmatrix.html:48:1 (Zmatrix.Rd:10): Warning: missing </ul> before </div>
fillFixedParams.html:54:1 (fillFixedParams.Rd:14): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Running examples in ‘graphPAF-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.SAF_summary
> ### Title: Produce plots of sequential and average PAF
> ### Aliases: plot.SAF_summary
> 
> ### ** Examples
> 
> library(splines)
> library(survival)
> library(parallel)
> options(boot.parallel="snow")
> options(boot.ncpus=2)
> #  Simulated data on occupational and environmental exposure to
> # chronic cough from Eide, 1995
> # First specify the causal graph, in terms of the parents of each node.  Then put into a list
> parent_urban.rural <- c()
> parent_smoking.category <- c("urban.rural")
> parent_occupational.exposure <- c("urban.rural")
> parent_y <- c("urban.rural","smoking.category","occupational.exposure")
> parent_list <- list(parent_urban.rural, parent_smoking.category,
+ parent_occupational.exposure, parent_y)
> # also specify nodes of graph, in order from root to leaves
> node_vec <- c("urban.rural","smoking.category","occupational.exposure", "y")
> model_list=automatic_fit(Hordaland_data,
+ parent_list=parent_list, node_vec=node_vec, prev=.09)
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a binomial glm!
> out <- average_paf(data=model_list[[length(model_list)]]$data,
+  model_list=model_list,
+ parent_list=parent_list, node_vec=node_vec, prev=.09, nperm=10,
+ riskfactor_vec = c("urban.rural","occupational.exposure"),ci=FALSE)
> plot(out)
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic argument:
• size = point.size
ℹ Did you misspell an argument name?
Error: Can't find method for generic `+(e1, e2)`:
- e1: <ggplot2::element_text>
- e2: <theme>
Execution halted
Found the following HTML validation problems:
compare_avg_tax_rates.html:63:1 (compare_avg_tax_rates.Rd:18): Warning: missing </ul> before </div>
install_taxstats.html:52:1 (install_taxstats.Rd:12): Warning: missing </ul> before </div>
revenue_foregone.html:54:1 (revenue_foregone.Rd:14): Warning: missing </ul> before </div>
sapto.html:87:1 (sapto.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘C. Cronkite-Ratcliff <ccronkite-ratcliff@usgs.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
api-cell_.html:84:1 (api-cell_.Rd:46): Warning: missing </ul> before </div>
api-tabX.html:104:1 (api-tabX.Rd:72): Warning: missing </ul> before </div>
api-tabX_.html:98:1 (api-tabX_.Rd:62): Warning: missing </ul> before </div>
data_handling.html:59:1 (data_handling.Rd:26): Warning: missing </ul> before </div>
gmwr_book.html:47:1 (gmwr_book.Rd:11): Warning: missing </ul> before </div>
graph-ug2dag.html:47:1 (graph-ug2dag.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Xin Guo <x.guo@polyu.edu.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "x.guo@polyu.edu.hk"),
               person(given = "Qiang",
                      family = "Fu",
                      role = "aut",
                      email = "qiang.fu@ubc.ca"))
as necessary.
Found the following HTML validation problems:
toLisp.html:46:1 (toLisp.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "David",
                      family = "Azriel",
                      role = "aut"),
               person(given = c("Abba", "Krieger", "see", "COPYRIGHTS", "file", "for", "the", "authors", "of", "the", "java"),
                      family = "libraries",
                      role = "aut"))
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

The Description field contains
  Greatly Improved Balance" (2016) <arXiv:1612.02315>, Krieger, A,
  Binary Matching with Imbalance Optimization" (2021) <arXiv:2012.03330>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
check_duplicate_columns.html:46:1 (check_duplicate_columns.Rd:10): Warning: missing </ul> before </div>
rename_duplicate_columns.html:46:1 (rename_duplicate_columns.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
prEnvModelCall.html:59:1 (prEnvModelCall.Rd:15): Warning: missing </ul> before </div>
prNlChooseDf.html:104:1 (prNlChooseDf.Rd:52): Warning: missing </ul> before </div>
prPrintCAstring.html:53:1 (prPrintCAstring.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Xiaoping Shi <xiaoping.shi@ubc.ca>’

The Description field contains
  <arXiv:2107.00728>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sophie Donnet <sophie.donnet@inrae.fr>’

The Description field contains
  Bar-hen, Barbillon and Donnet (2020) <arXiv:1807.10138>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) GREMLINS.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:23: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Frank E Harrell Jr <fh@fharrell.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frank", "E"),
                    family = "Harrell Jr",
                    role = c("aut", "cre"),
                    email = "fh@fharrell.com")
as necessary.
accrualReport: multiple local function definitions for ‘gg’ with
  different formal arguments
checkRd: (-1) setgreportOption.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:24: Lost braces
    24 | \item{code{figpos}:}{LaTeX figure environment position; default is \code{"htb!"}}
       |           ^
checkRd: (-1) setgreportOption.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:29: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
appsection.html:58:1 (appsection.Rd:16): Warning: missing </ul> before </div>
dNeedle.html:58:1 (dNeedle.Rd:16): Warning: missing </ul> before </div>
getgreportOption.html:46:1 (getgreportOption.Rd:10): Warning: missing </ul> before </div>
maskDframe.html:54:1 (maskDframe.Rd:14): Warning: missing </ul> before </div>
maskVal.html:54:1 (maskVal.Rd:14): Warning: missing </ul> before </div>
putFig.html:98:1 (putFig.Rd:42): Warning: missing </ul> before </div>
sampleFrac.html:54:1 (sampleFrac.Rd:14): Warning: missing </ul> before </div>
setgreportOption.html:103:1 (setgreportOption.Rd:30): Warning: missing </ul> before </div>
startPlot.html:64:1 (startPlot.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘David Buch <davidbuch42@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sagiru Mati <smati@smati.com.ng>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
create_dot_body.html:60:1 (create_dot_body.Rd:17): Warning: missing </ul> before </div>
export_graphviz.html:54:1 (export_graphviz.Rd:14): Warning: missing </ul> before </div>
leaf_stats.default.html:57:1 (leaf_stats.default.Rd:15): Warning: missing </ul> before </div>
plot.rank_average_treatment_effect.html:63:1 (plot.rank_average_treatment_effect.Rd:18): Warning: missing </ul> before </div>
print.boosted_regression_forest.html:51:1 (print.boosted_regression_forest.Rd:12): Warning: missing </ul> before </div>
print.grf.html:59:1 (print.grf.Rd:16): Warning: missing </ul> before </div>
print.grf_tree.html:51:1 (print.grf_tree.Rd:12): Warning: missing </ul> before </div>
print.rank_average_treatment_effect.html:51:1 (print.rank_average_treatment_effect.Rd:12): Warning: missing </ul> before </div>
print.tuning_output.html:58:1 (print.tuning_output.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Paul Murrell <p.murrell@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Murrell",
                      role = c("aut", "cre"),
                      email = "p.murrell@auckland.ac.nz"),
               person(given = "Velvet",
                      family = "Ly.",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
bind.html:62:1 (bind.Rd:21): Warning: missing </ul> before </div>
combine.html:61:1 (combine.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
cluster.html:55:1 (cluster.Rd:14): Warning: missing </ul> before </div>
plot.GridOnClusters.html:85:1 (plot.GridOnClusters.Rd:33): Warning: missing </ul> before </div>
plotGOCpatterns.html:51:1 (plotGOCpatterns.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Mark Heckmann <heckmann.mark@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Author field differs from that derived from Authors@R
  Author:    ‘Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Brenton M. Wiernik [aut, cre] (<https://orcid.org/0000-0001-9560-6336>, @bmwiernik)’
  Authors@R: ‘Claus O. Wilke [aut] (ORCID: <https://orcid.org/0000-0002-7470-9261>), Brenton M. Wiernik [aut, cre] (ORCID: <https://orcid.org/0000-0001-9560-6336>, Twitter: @bmwiernik)’
Found the following HTML validation problems:
coerce_models.html:115:1 (coerce_models.Rd:82): Warning: missing </ul> before </div>
fast_cov.html:50:1 (fast_cov.Rd:12): Warning: missing </ul> before </div>
generate_models.html:76:1 (generate_models.Rd:40): Warning: missing </ul> before </div>
generate_n01.html:54:1 (generate_n01.Rd:14): Warning: missing </ul> before </div>
imodel-general.html:85:1 (imodel-general.Rd:44): Warning: missing </ul> before </div>
imodel-info.html:50:1 (imodel-info.Rd:13): Warning: missing </ul> before </div>
impose_zero.html:50:1 (impose_zero.Rd:12): Warning: missing </ul> before </div>
utilities_grips.html:81:1 (utilities_grips.Rd:41): Warning: missing </ul> before </div>
Maintainer: ‘Jader Lugon Junior <jlugonjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jader", "Lugon"),
                      family = "Junior",
                      role = c("aut", "cre"),
                      email = "jlugonjr@gmail.com"),
               person(given = c("Antonio", "Jose", "da", "Silva"),
                      family = "Neto",
                      role = "aut"))
as necessary.
Maintainer: ‘Ryan Angi <angi.ryan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ryan",
                    family = "Angi",
                    role = c("aut", "cre"),
                    email = "angi.ryan@gmail.com")
as necessary.
Maintainer: ‘Pierre-Olivier Chasset <pierre-olivier@chasset.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pierre-Olivier",
                    family = "Chasset",
                    role = c("aut", "cre"),
                    email = "pierre-olivier@chasset.net")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘grnn-package.Rd’:
    \keyword{network,}
Maintainer: ‘Nelson Nazzicari <nelson.nazzicari@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nelson", "Nazzicari", "&", "Filippo"),
                      family = "Biscarini",
                      role = "aut"),
               person(given = "Nelson",
                      family = "Nazzicari",
                      role = "cre",
                      email = "nelson.nazzicari@gmail.com"))
as necessary.
Maintainer: ‘Volkmar Liebscher <volkmar.liebscher@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Volkmar",
                    family = "Liebscher",
                    role = c("aut", "cre"),
                    email = "volkmar.liebscher@uni-greifswald.de")
as necessary.

The Description field contains
  <arXiv:1504.05795> for phylogenetic trees, but may apply to a diversity
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
APIcall.html:60:1 (APIcall.Rd:22): Warning: missing </ul> before </div>
execAddin.html:46:1 (execAddin.Rd:10): Warning: missing </ul> before </div>
serverInit.html:57:1 (serverInit.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
try.renaming.method.again.html:57:1 (try.renaming.method.again.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Aaron England <aaron.england24@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "England",
                    role = c("aut", "cre"),
                    email = "aaron.england24@gmail.com")
as necessary.
Found the following HTML validation problems:
collapse_groups.html:392:1 (collapse_groups.Rd:302): Warning: <h5> anchor "cat_cols" already defined
collapse_groups.html:450:1 (collapse_groups.Rd:330): Warning: <h5> anchor "id_cols" already defined
collapse_groups.html:464:1 (collapse_groups.Rd:338): Warning: <h5> anchor "num_cols" already defined
differs_from_previous.html:193:1 (differs_from_previous.Rd:98): Warning: <h4> anchor "Numeric-scalar" already defined
fold.html:317:1 (fold.Rd:226): Warning: <h4> anchor "cat_col" already defined
fold.html:331:1 (fold.Rd:233): Warning: <h4> anchor "id_col" already defined
fold.html:342:1 (fold.Rd:239): Warning: <h4> anchor "num_col" already defined
partition.html:129:1 (partition.Rd:94): Warning: <h4> anchor "cat_col" already defined
partition.html:143:1 (partition.Rd:101): Warning: <h4> anchor "id_col" already defined
partition.html:154:1 (partition.Rd:107): Warning: <h4> anchor "num_col" already defined
Found the following HTML validation problems:
aggregate.vectorlist.html:61:1 (aggregate.vectorlist.Rd:18): Warning: missing </ul> before </div>
aggregate_marks.html:64:1 (aggregate_marks.Rd:24): Warning: missing </ul> before </div>
as.vectorlist.html:50:1 (as.vectorlist.Rd:12): Warning: missing </ul> before </div>
cbind.groupedHyperframe.html:48:1 (cbind.groupedHyperframe.Rd:11): Warning: missing </ul> before </div>
cli_defunct_.html:48:1 (cli_defunct_.Rd:14): Warning: missing </ul> before </div>
defunct.html:48:1 (defunct.Rd:14): Warning: missing </ul> before </div>
fv2theo.html:66:1 (fv2theo.Rd:32): Warning: missing </ul> before </div>
get_nested.html:52:1 (get_nested.Rd:15): Warning: missing </ul> before </div>
interpolation_fv.html:57:1 (interpolation_fv.Rd:19): Warning: missing </ul> before </div>
is.numeric.ppp.html:47:1 (is.numeric.ppp.Rd:10): Warning: missing </ul> before </div>
is.vectorlist.html:54:1 (is.vectorlist.Rd:16): Warning: missing </ul> before </div>
print.fvlist.html:51:1 (print.fvlist.Rd:12): Warning: missing </ul> before </div>
quantile.anylist.html:51:1 (quantile.anylist.Rd:12): Warning: missing </ul> before </div>
quantile.hyperframe.html:51:1 (quantile.hyperframe.Rd:12): Warning: missing </ul> before </div>
quantile.ppp.html:51:1 (quantile.ppp.Rd:12): Warning: missing </ul> before </div>
quantile.ppplist.html:51:1 (quantile.ppplist.Rd:12): Warning: missing </ul> before </div>
rmax.html:73:1 (rmax.Rd:32): Warning: missing </ul> before </div>
summary.fvlist.html:70:1 (summary.fvlist.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Alexander Sibley <dcibioinformatics@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiaxing",
                      family = "Lin",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Sibley",
                      role = c("aut", "cre"),
                      email = "dcibioinformatics@duke.edu"),
               person(given = "Tracy",
                      family = "Truong",
                      role = "aut"),
               person(given = "Kouros",
                      family = "Owzar",
                      role = "aut"),
               person(given = "Zhiguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Layne",
                      family = "Rogers",
                      role = "ctb"),
               person(given = "Yu",
                      family = "Jiang",
                      role = "ctb"),
               person(given = "Janice",
                      family = "McCarthy",
                      role = "ctb"),
               person(given = "Andrew",
                      family = "Allen",
                      role = "ctb"))
as necessary.
Maintainer: ‘Niklas Pfister <pfister@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Niklas",
                      family = "Pfister",
                      role = c("aut", "cre"),
                      email = "pfister@stat.math.ethz.ch"),
               person(given = "Sebastian",
                      family = "Weichwald",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhigen Zhao <zhaozhg@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhigen",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "zhaozhg@temple.edu")
as necessary.
Maintainer: ‘Matthew Carli <carlimm@mymail.vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Wheeler",
                      role = "aut"),
               person(given = "Matthew",
                      family = "Carli",
                      role = c("aut", "cre"),
                      email = "carlimm@mymail.vcu.edu"))
as necessary.
Maintainer: ‘Li Ma <li.ma@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacopo",
                      family = "Soriano",
                      role = "aut"),
               person(given = "Li",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "li.ma@duke.edu"))
as necessary.

The Description field contains
  <arXiv:1602.03990v2 [stat.ME]>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Terrance Savitsky <tds151@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Terrance",
                    family = "Savitsky",
                    role = c("aut", "cre"),
                    email = "tds151@gmail.com")
as necessary.
Found the following significant warnings:
  dpmix.cpp:150:18: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  dpmix.cpp:159:18: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  dpmix.cpp:252:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  dpmix_count.cpp:157:18: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  dpmix_count.cpp:166:18: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  dpmix_count.cpp:293:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/growfunctions.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following HTML validation problems:
samples.html:51:1 (samples.Rd:13): Warning: missing </ul> before </div>
samples.gmrfdpgrow.html:52:1 (samples.gmrfdpgrow.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Rodriguez <daniel.rodriguez.perez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Rodriguez",
                    role = c("aut", "cre"),
                    email = "daniel.rodriguez.perez@gmail.com")
as necessary.
Maintainer: ‘Ian W. McKeague <im2131@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Lopez-Pintado",
                      role = "aut"),
               person(given = c("Ian", "W."),
                      family = "McKeague",
                      role = c("aut", "cre"),
                      email = "im2131@columbia.edu"))
as necessary.
Found the following HTML validation problems:
Khatf.html:68:1 (Khatf.Rd:24): Warning: missing </ul> before </div>
posteriordistribcurve.html:80:1 (posteriordistribcurve.Rd:30): Warning: missing </ul> before </div>
posteriorobs.html:80:1 (posteriorobs.Rd:30): Warning: missing </ul> before </div>
priormeanobs.html:56:1 (priormeanobs.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
generics.html:55:1 (generics.Rd:18): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Xuan Dang <xuandang11289@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuan",
                    family = "Dang",
                    role = c("aut", "cre"),
                    email = "xuandang11289@gmail.com")
as necessary.
Maintainer: ‘Lukas Meier <meier@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukas",
                    family = "Meier",
                    role = c("aut", "cre"),
                    email = "meier@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Maintainer: ‘Hui (Tom) Tang <htang2013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Tang",
                      role = "aut"),
               person(given = c("Norbert", "J."),
                      family = "Pienta",
                      role = "aut"),
               person(given = "Hui",
                      family = "Tang",
                      role = "cre",
                      email = "htang2013@gmail.com",
                      comment = "Tom"))
as necessary.
Found the following files/directories:
  ‘p1_20up-vs-p2_25up_in_str1.txt’ ‘p1_20up-vs-p2_25up_in_str2.txt’
  ‘p2_25up-vs-p1_20up_in_str1.txt’ ‘p2_25up-vs-p1_20up_in_str2.txt’
  ‘s0_20up.txt’ ‘s0_30up.txt’ ‘s0_f2up.txt’ ‘strs.vec_01mx.txt’
  ‘strs.vec_02mx.txt’ ‘strs.vec_03mx.txt’ ‘strs.vec_04mx.txt’
  ‘strs.vec_05mx.txt’ ‘strs.vec_06mx.txt’ ‘strs.vec_30up.txt’
  ‘strs.vec_50up.txt’ ‘strs.vec_f2up.txt’ ‘uni_p1_20up-p2_25up.txt’
Maintainer: ‘Craig Varrichio <canthony427@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Craig",
                    family = "Varrichio",
                    role = c("aut", "cre"),
                    email = "canthony427@gmail.com")
as necessary.
checkRd: (-1) matches.Rd:33: Lost braces; missing escapes or markup?
    33 | be set to an index value of \code{length+1}.  If {indexes=FALSE}, they will
       |                                                  ^
File ‘grr/libs/grr.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Daniel C. Amorese  <amorese@ipgp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Amorese",
                      role = "aut"),
               person(given = c("Paul", "A."),
                      family = "Rydelek",
                      role = "aut"),
               person(given = "Jean-Robert",
                      family = "Grasso",
                      role = "aut"),
               person(given = c("Daniel", "C."),
                      family = "Amorese",
                      role = "cre",
                      email = "amorese@ipgp.fr"))
as necessary.
checkRd: (-1) fmddisc.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:54: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘FMD mag discontinuities_disc.png’ ‘FMD mag
  discontinuities_disc1.res’ ‘FMD mag discontinuities_disc2.res’
  ‘IDYLLWILD_bvmed.png’ ‘IDYLLWILD_fig.png’ ‘Schuster's
  diagram_schu.png’ ‘hour.res’
Maintainer: ‘Andy Wills <andy@willslab.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kazunaga",
                      family = "Matsuki",
                      role = "aut"),
               person(given = "Andy",
                      family = "Wills",
                      role = "cre",
                      email = "andy@willslab.co.uk"))
as necessary.
checkRd: (-1) qdb.p.correct.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{refpts}{a numeric vector used as a reference point to determine the correct side of the \code{qdb} for classifying \code{x}. The \code{length(refpts)} should be equal to {ncol(x)}. Default to \code{colMeans(x)}. }
       |                                                                                                                                                                                 ^
Maintainer: ‘Louis Bergelson <louisb@broadinstitute.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kiran",
                      family = "Garimella",
                      role = "aut"),
               person(given = "Louis",
                      family = "Bergelson",
                      role = "cre",
                      email = "louisb@broadinstitute.org"))
as necessary.
Maintainer: ‘Samarendra Das <samarendra.das@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samarendra",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "samarendra.das@icar.gov.in")
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stat.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brad",
                      family = "Efron",
                      role = "aut"),
               person(given = "R.",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stat.stanford.edu"))
as necessary.
Maintainer: ‘Olivier Briet <o.briet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olivier",
                    family = "Briet",
                    role = c("aut", "cre"),
                    email = "o.briet@gmail.com")
as necessary.
Maintainer: ‘Solenne Gaucher <solenne.gaucher@math.u-psud.fr>’

The Description field contains
  as describes in Gaucher, Klopp and Robin (2019) <arXiv:1911.13122>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) crossval.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Tobias Mütze <tobias.muetze@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
check_gsnb.html:46:1 (check_gsnb.Rd:10): Warning: missing </ul> before </div>
get_covar.html:46:1 (get_covar.Rd:10): Warning: missing </ul> before </div>
print.gsnb.html:51:1 (print.gsnb.Rd:12): Warning: missing </ul> before </div>
print.nb.html:51:1 (print.nb.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_rec_rates_formatting.html:46:1 (check_rec_rates_formatting.Rd:10): Warning: missing </ul> before </div>
make_subscript_matrix.html:71:1 (make_subscript_matrix.Rd:22): Warning: missing </ul> before </div>
tidy_up_sampled_haplos.html:50:1 (tidy_up_sampled_haplos.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Xueyuan Cao <xcao12@uthsc.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘gsda.Rd’:
    \keyword{association;}
    \keyword{enrichment;}
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Marie-Karelle Riviere <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marie-Karelle",
                    family = "Riviere",
                    role = c("aut", "cre"),
                    email = "eldamjh@gmail.com")
as necessary.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"),
               person(given = "Lynna",
                      family = "Chu",
                      role = "aut"),
               person(given = "Hoseung",
                      family = "Song",
                      role = "aut"))
as necessary.
Maintainer: ‘Sayanti Guha Majumdar <sayanti23gm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sayanti", "Guha"),
                      family = "Majumdar",
                      role = c("aut", "cre"),
                      email = "sayanti23gm@gmail.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"))
as necessary.
Maintainer: ‘Ben Marwick <benmarwick@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/benmarwick/gsloid
which should likely be
  https://github.com/benmarwick/gsloid/issues
instead.
checkRd: (-1) lisiecki2005.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:29: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘gsl/libs/gsl.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘EXTPTR_TAG’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Sergio Venturini <sergio.venturini@unibocconi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "sergio.venturini@unibocconi.it")
as necessary.
Maintainer: ‘Zhenyu Jia <ajia.ucr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhenyu",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "ajia.ucr@gmail.com")
as necessary.
Found the following HTML validation problems:
print.GSODR.Info.html:51:1 (print.GSODR.Info.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Yifei Zhang <yz3925@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yifei",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "yz3925@columbia.edu"),
               person(given = "Xuan",
                      family = "Bi",
                      role = "aut"))
as necessary.
Maintainer: ‘Baosheng Liang <liangbsunc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Baosheng",
                      family = "Liang",
                      role = c("aut", "cre"),
                      email = "liangbsunc@gmail.com"),
               person(given = "Yuanjia",
                      family = "Wang",
                      role = "aut"),
               person(given = "Donglin",
                      family = "Zeng",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
plot.gstar.html:59:1 (plot.gstar.Rd:16): Warning: missing </ul> before </div>
predict.gstar.html:55:1 (predict.gstar.Rd:14): Warning: missing </ul> before </div>
summary.gstar.html:60:1 (summary.gstar.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
variogram.html:304:1 (variogram.Rd:166): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = "Lynna",
                      family = "Chu",
                      role = "aut"))
as necessary.

The Description field contains
  high-dimensional and non-Euclidean data <arXiv:1810.05973>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘G. Grothendieck <ggrothendieck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Grothendieck",
                    role = c("aut", "cre"),
                    email = "ggrothendieck@gmail.com")
as necessary.
Maintainer: ‘Yiqing Xu <yiqingxu@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yiqing",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "yiqingxu@stanford.edu"),
               person(given = "Licheng",
                      family = "Liu",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/gsynth.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
gtable_height.html:46:1 (gtable_height.Rd:10): Warning: missing </ul> before </div>
gtable_width.html:46:1 (gtable_width.Rd:10): Warning: missing </ul> before </div>
is.gtable.html:46:1 (is.gtable.Rd:10): Warning: missing </ul> before </div>
print.gtable.html:55:1 (print.gtable.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) artset1987.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:12: Lost braces in \itemize; meant \describe ?
Found the following HTML validation problems:
group_onehot.html:50:1 (group_onehot.Rd:12): Warning: missing </ul> before </div>
scale_data.html:68:1 (scale_data.Rd:24): Warning: missing </ul> before </div>
select_hbgs.html:58:1 (select_hbgs.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  data.  Song, H. and Chen, H. (2022) <arXiv:2205.13787>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = "Jingru",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
get_row_index.html:156:1 (get_row_index.Rd:116): Warning: missing </ul> before </div>
last_row_id.html:46:1 (last_row_id.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
read_geojson.html:46:1 (read_geojson.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as.data.frame.gt_tbl.html:61:1 (as.data.frame.gt_tbl.Rd:22): Warning: missing </ul> before </div>
print.gt_tbl.html:64:1 (print.gt_tbl.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
tbl_listing.html:62:1 (tbl_listing.Rd:27): Warning: <h3> anchor "group_by" already defined
Found the following HTML validation problems:
gt_verify_path.html:46:1 (gt_verify_path.Rd:10): Warning: missing </ul> before </div>
remove_gt_api_key.html:52:1 (remove_gt_api_key.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
deprecated_ci_column.html:176:1 (deprecated_ci_column.Rd:76): Warning: missing </ul> before </div>
deprecated_ci_column.html:97:1 (deprecated_ci_column.Rd:50): Warning: <h4> anchor "+E2+80+98modify_spanning_header+28+29+E2+80+99" already defined
tests.html:439:1 (tests.Rd:165): Warning: missing </ul> before </div>
Maintainer: ‘JunhuiLi<junhuili@cau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "JunhuiLi",
                      family = "WenxinLiu",
                      role = "aut"),
               person(family = "JunhuiLi",
                      role = "cre",
                      email = "junhuili@cau.edu.cn"))
as necessary.
Found the following HTML validation problems:
gu_api_key.html:56:1 (gu_api_key.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gfrance85.Rd’
Found the following HTML validation problems:
eq1dk.html:55:1 (eq1dk.Rd:14): Warning: missing </ul> before </div>
eqn1.html:55:1 (eqn1.Rd:14): Warning: missing </ul> before </div>
guess_lik.html:54:1 (guess_lik.Rd:14): Warning: missing </ul> before </div>
guessdk_lik.html:54:1 (guessdk_lik.Rd:14): Warning: missing </ul> before </div>
interleave.html:50:1 (interleave.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) guild_merge.Rd:38: Lost braces; missing escapes or markup?
    38 |     \item{\code{summary_name}}{Name used for the run summary. Use '${run_id}' in the name to include the run ID.}
       |                                                                     ^
checkRd: (-1) guild_merge_cli.Rd:88: Lost braces; missing escapes or markup?
    88 | \item{summary_name}{Name used for the run summary. Use '${run_id}' in the name to include the run ID.}
       |                                                          ^
Found the following HTML validation problems:
guild_api_runs_cli.html:150:1 (guild_api_runs_cli.Rd:73): Warning: missing </ul> before </div>
guild_run_cli.html:508:1 (guild_run_cli.Rd:355): Warning: missing </ul> before </div>
guild_select_cli.html:389:1 (guild_select_cli.Rd:285): Warning: missing </ul> before </div>
guild_view_cli.html:377:1 (guild_view_cli.Rd:272): Warning: missing </ul> before </div>
Maintainer: ‘Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ricardo",
                    family = "Wurmus",
                    role = c("aut", "cre"),
                    email = "ricardo.wurmus@mdc-berlin.de")
as necessary.
Maintainer: ‘Chris Muir <cdmuir@hawaii.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregor",
                      family = "Aisch",
                      role = "aut"),
               person(given = "Josh",
                      family = "Keller",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"))
as necessary.
Found the following HTML validation problems:
discard_end_while.html:50:1 (discard_end_while.Rd:12): Warning: missing </ul> before </div>
discard_start_while.html:50:1 (discard_start_while.Rd:12): Warning: missing </ul> before </div>
keep_while.html:50:1 (keep_while.Rd:12): Warning: missing </ul> before </div>
read_url.html:46:1 (read_url.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Ho Tsung-wu <tsungwu@ntnu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ho",
                    family = "Tsung-wu",
                    role = c("aut", "cre"),
                    email = "tsungwu@ntnu.edu.tw")
as necessary.
Found the following HTML validation problems:
gvc.html:137:1 (gvc.Rd:105): Warning: <h5> anchor "Usage" already defined
gvc.html:143:1 (gvc.Rd:109): Warning: <h5> anchor "Returns" already defined
gvc.html:160:1 (gvc.Rd:118): Warning: <h5> anchor "Usage" already defined
gvc.html:166:1 (gvc.Rd:122): Warning: <h5> anchor "Returns" already defined
gvc.html:183:1 (gvc.Rd:131): Warning: <h5> anchor "Usage" already defined
gvc.html:189:1 (gvc.Rd:135): Warning: <h5> anchor "Returns" already defined
gvc.html:206:1 (gvc.Rd:144): Warning: <h5> anchor "Usage" already defined
gvc.html:212:1 (gvc.Rd:148): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Elizabeth Slate <slate@stat.fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Edsel", "A."),
                      family = "Pena",
                      role = "aut",
                      email = "pena@stat.sc.edu"),
               person(given = c("Elizabeth", "H."),
                      family = "Slate",
                      role = "aut",
                      email = "eslate@fsu.edu"),
               person(given = "Elizabeth",
                      family = "Slate",
                      role = "cre",
                      email = "slate@stat.fsu.edu"))
as necessary.
Found the following HTML validation problems:
gvs_core.html:64:1 (gvs_core.Rd:22): Warning: missing </ul> before </div>
Maintainer: ‘Li Xing <sfulxing@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Xu",
                      role = "aut"),
               person(given = "Li",
                      family = "Xing",
                      role = c("aut", "cre"),
                      email = "sfulxing@gmail.com"),
               person(given = "Jessica",
                      family = "Su",
                      role = "aut"),
               person(given = "Xuekui",
                      family = "Zhang",
                      role = "aut",
                      email = "UBC.X.Zhang@gmail.com"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "aut",
                      email = "Weiliang.Qiu@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) esSim.Rd:81: Lost braces; missing escapes or markup?
    81 | \eqn{83} SNPs are in cluster {-}, \eqn{714} SNPs are in cluster \eqn{0},
       |                              ^
checkRd: (-1) esSimDiffPriors.Rd:91: Lost braces; missing escapes or markup?
    91 | \eqn{64} SNPs are in cluster {-}, \eqn{708} SNPs are in cluster \eqn{0},
       |                              ^
Maintainer: ‘Stephanie Gogarten <sdmorris@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ian",
                      family = "Painter",
                      role = "aut"),
               person(given = c("University", "of"),
                      family = "Washington",
                      role = "aut"),
               person(given = "Stephanie",
                      family = "Gogarten",
                      role = "cre",
                      email = "sdmorris@uw.edu"))
as necessary.
Found the following HTML validation problems:
df_site_new.html:60:1 (df_site_new.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get.period.fitting.month.html:48:1 (get.period.fitting.month.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
XXX.html:46:1 (XXX.Rd:10): Warning: missing </ul> before </div>
add.html:88:1 (add.Rd:39): Warning: missing </ul> before </div>
check_deprecated.html:50:1 (check_deprecated.Rd:12): Warning: missing </ul> before </div>
dispose.html:54:1 (dispose.Rd:15): Warning: missing </ul> before </div>
editable.html:62:1 (editable.Rd:23): Warning: missing </ul> before </div>
focus.html:61:1 (focus.Rd:21): Warning: missing </ul> before </div>
font.html:84:1 (font.Rd:47): Warning: missing </ul> before </div>
gWidgets2-undocumented.html:59:1 (gWidgets2-undocumented.Rd:16): Warning: missing </ul> before </div>
gcontainer.html:61:1 (gcontainer.Rd:21): Warning: missing </ul> before </div>
gdfnotebook.html:62:1 (gdfnotebook.Rd:19): Warning: missing </ul> before </div>
getToolkitWidget.html:72:1 (getToolkitWidget.Rd:34): Warning: missing </ul> before </div>
ggraphicsnotebook.html:95:1 (ggraphicsnotebook.Rd:46): Warning: missing </ul> before </div>
gimage.html:102:1 (gimage.Rd:49): Warning: missing </ul> before </div>
gmenu.html:149:1 (gmenu.Rd:74): Warning: missing </ul> before </div>
gtoolbar.html:133:1 (gtoolbar.Rd:66): Warning: missing </ul> before </div>
gwidget.html:97:1 (gwidget.Rd:53): Warning: missing </ul> before </div>
isExtant.html:49:1 (isExtant.Rd:13): Warning: missing </ul> before </div>
methods.html:67:1 (methods.Rd:21): Warning: missing </ul> before </div>
observer.html:55:1 (observer.Rd:15): Warning: missing </ul> before </div>
redo.html:53:1 (redo.Rd:15): Warning: missing </ul> before </div>
short_summary.html:91:1 (short_summary.Rd:37): Warning: missing </ul> before </div>
size.html:57:1 (size.Rd:21): Warning: missing </ul> before </div>
tag.html:64:1 (tag.Rd:23): Warning: missing </ul> before </div>
tooltip.html:63:1 (tooltip.Rd:21): Warning: missing </ul> before </div>
undo.html:53:1 (undo.Rd:15): Warning: missing </ul> before </div>
visible.html:64:1 (visible.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
GComponentObservable.html:46:1 (GComponentObservable.Rd:8): Warning: missing </ul> before </div>
GSpinButton.html:50:1 (GSpinButton.Rd:12): Warning: missing </ul> before </div>
GStatusBar.html:49:1 (GStatusBar.Rd:8): Warning: missing </ul> before </div>
getWidget.tkwin.html:47:1 (getWidget.tkwin.Rd:10): Warning: missing </ul> before </div>
makeCalendar.html:64:1 (makeCalendar.Rd:20): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.R’
Maintainer: ‘Aboubacar Y. Touré <aboubacaryacoubatoure.ussgb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aboubacar", "Y."),
                      family = "Touré",
                      role = c("aut", "cre"),
                      email = "aboubacaryacoubatoure.ussgb@gmail.com"),
               person(given = c("Célestin", "C."),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.
Maintainer: ‘Daisuke Yoneoka <blue.sky.sea.dy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daisuke",
                      family = "Yoneoka",
                      role = c("aut", "cre"),
                      email = "blue.sky.sea.dy@gmail.com"),
               person(given = "Eiko",
                      family = "Saito",
                      role = "aut"))
as necessary.
Maintainer: ‘Joseph Emile Honour Percival <ipercival@gmail.com>’

The Description field contains
  (Percival et al., 2021)<arXiv:2101.03491>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Wheeler <dcwheels@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Wheeler",
                    role = c("aut", "cre"),
                    email = "dcwheels@gmail.com")
as necessary.
Maintainer: ‘Wayne Jones <wayne.w.jones@shell.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wayne",
                      family = "Jones",
                      role = c("aut", "cre"),
                      email = "wayne.w.jones@shell.com"),
               person(given = "Ludger",
                      family = "Evers",
                      role = "aut",
                      email = "ludger.evers@glasgow.ac.uk"),
               person(given = "Andrej",
                      family = "Aderhold",
                      role = "aut",
                      email = "andrej.aderhold@protonmail.com"))
as necessary.
Maintainer: ‘ChangJiang Xu <changjiang.h.xu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "ChangJiang",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "changjiang.h.xu@gmail.com"),
               person(given = c("Celia", "M.T."),
                      family = "Greenwood",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘testdata1.txt’ ‘testdata2.txt’ ‘testdata3.txt’
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GxEScanR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hyungsuk",
                    family = "Tak",
                    role = c("aut", "cre"),
                    email = "hyungsuk.tak@gmail.com")
as necessary.
Found the following HTML validation problems:
generics.html:54:1 (generics.Rd:15): Warning: missing </ul> before </div>
h2o4gpu.elastic_net_classifier.html:167:1 (h2o4gpu.elastic_net_classifier.Rd:75): Warning: missing </ul> before </div>
h2o4gpu.elastic_net_regressor.html:167:1 (h2o4gpu.elastic_net_regressor.Rd:75): Warning: missing </ul> before </div>
h2o4gpu.gradient_boosting_classifier.html:202:1 (h2o4gpu.gradient_boosting_classifier.Rd:94): Warning: missing </ul> before </div>
h2o4gpu.gradient_boosting_regressor.html:206:1 (h2o4gpu.gradient_boosting_regressor.Rd:96): Warning: missing </ul> before </div>
h2o4gpu.kmeans.html:106:1 (h2o4gpu.kmeans.Rd:42): Warning: missing </ul> before </div>
h2o4gpu.pca.html:85:1 (h2o4gpu.pca.Rd:31): Warning: missing </ul> before </div>
h2o4gpu.random_forest_classifier.html:146:1 (h2o4gpu.random_forest_classifier.Rd:64): Warning: missing </ul> before </div>
h2o4gpu.random_forest_regressor.html:142:1 (h2o4gpu.random_forest_regressor.Rd:62): Warning: missing </ul> before </div>
h2o4gpu.truncated_svd.html:80:1 (h2o4gpu.truncated_svd.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘David Sjoberg <dav.sjob@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Sjoberg",
                    role = c("aut", "cre"),
                    email = "dav.sjob@gmail.com")
as necessary.
Found the following HTML validation problems:
print.hn_item.html:51:1 (print.hn_item.Rd:12): Warning: missing </ul> before </div>
print.hn_user.html:51:1 (print.hn_user.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
calc_allele_lik_s3.html:62:1 (calc_allele_lik_s3.Rd:18): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Client.html:160:1 (Client.Rd:157): Warning: <h5> anchor "Usage" already defined
Client.html:166:1 (Client.Rd:161): Warning: <h5> anchor "Arguments" already defined
Client.html:181:1 (Client.Rd:170): Warning: <h5> anchor "Returns" already defined
Client.html:188:1 (Client.Rd:173): Warning: <h5> anchor "Examples" already defined
Client.html:208:1 (Client.Rd:188): Warning: <h5> anchor "Usage" already defined
Client.html:214:1 (Client.Rd:192): Warning: <h5> anchor "Arguments" already defined
Client.html:229:1 (Client.Rd:201): Warning: <h5> anchor "Returns" already defined
Client.html:246:1 (Client.Rd:210): Warning: <h5> anchor "Usage" already defined
Client.html:252:1 (Client.Rd:214): Warning: <h5> anchor "Arguments" already defined
Client.html:267:1 (Client.Rd:223): Warning: <h5> anchor "Returns" already defined
Client.html:284:1 (Client.Rd:232): Warning: <h5> anchor "Usage" already defined
Client.html:290:1 (Client.Rd:236): Warning: <h5> anchor "Arguments" already defined
Client.html:305:1 (Client.Rd:245): Warning: <h5> anchor "Returns" already defined
Client.html:322:1 (Client.Rd:254): Warning: <h5> anchor "Usage" already defined
Client.html:328:1 (Client.Rd:258): Warning: <h5> anchor "Examples" already defined
Client.html:349:1 (Client.Rd:274): Warning: <h5> anchor "Usage" already defined
Client.html:355:1 (Client.Rd:278): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
calc_xscale.html:50:1 (calc_xscale.Rd:12): Warning: missing </ul> before </div>
enumerate_edge_basis.html:89:1 (enumerate_edge_basis.Rd:40): Warning: missing </ul> before </div>
evaluate_basis.html:58:1 (evaluate_basis.Rd:16): Warning: missing </ul> before </div>
formula_hal.html:61:1 (formula_hal.Rd:19): Warning: missing </ul> before </div>
h.html:123:1 (h.Rd:73): Warning: missing </ul> before </div>
index_first_copy.html:47:1 (index_first_copy.Rd:10): Warning: missing </ul> before </div>
meets_basis.html:63:1 (meets_basis.Rd:18): Warning: missing </ul> before </div>
num_knots_generator.html:71:1 (num_knots_generator.Rd:28): Warning: missing </ul> before </div>
plus-.formula_hal9001.html:53:1 (plus-.formula_hal9001.Rd:13): Warning: missing </ul> before </div>
print.formula_hal9001.html:51:1 (print.formula_hal9001.Rd:12): Warning: missing </ul> before </div>
print.summary.hal9001.html:55:1 (print.summary.hal9001.Rd:14): Warning: missing </ul> before </div>
quantizer.html:51:1 (quantizer.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dcar_selector.html:96:1 (dcar_selector.Rd:46): Warning: missing </ul> before </div>
est_dcar.html:79:1 (est_dcar.Rd:35): Warning: missing </ul> before </div>
gcv_selector.html:96:1 (gcv_selector.Rd:46): Warning: missing </ul> before </div>
make_bins.html:59:1 (make_bins.Rd:19): Warning: missing </ul> before </div>
plateau_selector.html:126:1 (plateau_selector.Rd:68): Warning: missing </ul> before </div>
Maintainer: ‘Sohyun Park <park.2627@osu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sohyun",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "park.2627@osu.edu"),
               person(given = "Ningchuan",
                      family = "Xiao",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
calc_mse_.html:56:1 (calc_mse_.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Teemu Daniel Laajala <teelaa@utu.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Teemu", "Daniel"),
                    family = "Laajala",
                    role = c("aut", "cre"),
                    email = "teelaa@utu.fi")
as necessary.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.ga.breed’ ‘.ga.fitness’ ‘.ga.init’ ‘.ga.mutate’ ‘.ga.step’
  ‘.ga.weight’
Found the following HTML validation problems:
HandlrClient.html:146:1 (HandlrClient.Rd:207): Warning: <h5> anchor "Usage" already defined
HandlrClient.html:152:1 (HandlrClient.Rd:211): Warning: <h5> anchor "Arguments" already defined
HandlrClient.html:190:1 (HandlrClient.Rd:235): Warning: <h5> anchor "Usage" already defined
HandlrClient.html:196:1 (HandlrClient.Rd:239): Warning: <h5> anchor "Arguments" already defined
HandlrClient.html:223:1 (HandlrClient.Rd:256): Warning: <h5> anchor "Usage" already defined
HandlrClient.html:229:1 (HandlrClient.Rd:260): Warning: <h5> anchor "Arguments" already defined
HandlrClient.html:258:1 (HandlrClient.Rd:279): Warning: <h5> anchor "Usage" already defined
HandlrClient.html:264:1 (HandlrClient.Rd:283): Warning: <h5> anchor "Returns" already defined
HandlrClient.html:281:1 (HandlrClient.Rd:292): Warning: <h5> anchor "Usage" already defined
HandlrClient.html:287:1 (HandlrClient.Rd:296): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Jonathan Schwartz <jzs1986@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Schwartz",
                    role = c("aut", "cre"),
                    email = "jzs1986@gmail.com")
as necessary.
Maintainer: ‘Konrad Krahl <Beratung@Hanseatic-Statistics.de>’

The BugReports field in DESCRIPTION has
  https://github.com/KonradKrahl/HanStat
which should likely be
  https://github.com/KonradKrahl/HanStat/issues
instead.
Maintainer: ‘K. Burkett <kburkett@uottawa.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "K.",
                      family = "Burkett",
                      role = c("aut", "cre"),
                      email = "kburkett@uottawa.ca"),
               person(given = "B.",
                      family = "McNeney",
                      role = "aut",
                      email = "mcneney@sfu.ca"),
               person(given = "J.",
                      family = "Graham",
                      role = "aut",
                      email = "jgraham@stat.sfu.ca"),
               person(given = c("with", "code", "for", "case-control", "data", "contributed", "by", "Zhijian"),
                      family = "Chen",
                      role = "aut",
                      email = "z11chen@math.uwaterloo.ca"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ruidong Li <rli012@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruidong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "rli012@ucr.edu"),
               person(given = "Han",
                      family = "Qu",
                      role = "aut"),
               person(given = "Jinfeng",
                      family = "Chen",
                      role = "aut"),
               person(given = "Shibo",
                      family = "Wang",
                      role = "aut"),
               person(family = "Le Zhang",
                      role = "aut"),
               person(given = "Julong",
                      family = "Wei",
                      role = "aut"),
               person(given = c("Sergio", "Pietro"),
                      family = "Ferrante",
                      role = "aut"),
               person(given = c("Mikeal", "L."),
                      family = "Roose",
                      role = "aut"),
               person(given = "Zhenyu",
                      family = "Jia",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
initParallelRun.html:49:1 (initParallelRun.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
louis.info.html:57:1 (louis.info.Rd:37): Warning: missing </ul> before </div>
print.haplo.score.slide.html:63:1 (print.haplo.score.slide.Rd:35): Warning: missing </ul> before </div>
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Simondi",
                      role = "aut",
                      email = "sebastian.simondi@gmail.com"),
               person(given = "Gaston",
                      family = "Quero",
                      role = c("aut", "cre"),
                      email = "gastonquero@gmail.com"),
               person(given = c("with", "contributions", "from", "Victoria"),
                      family = "Bonnecarrere",
                      role = "aut"),
               person(given = "Lucia",
                      family = "Gutierrez",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiuwen Wang <wangxw36@mail2.sysu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiuwen",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wangxw36@mail2.sysu.edu.cn")
as necessary.
Found the following HTML validation problems:
new-default-blueprint.html:176:1 (new-default-blueprint.Rd:108): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Wilson <hmp.R.package@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J."),
                      family = "Wilson",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Wilson",
                      role = "cre",
                      email = "hmp.R.package@gmail.com"))
as necessary.
Found the following HTML validation problems:
HarmonyMatrix.html:115:1 (HarmonyMatrix.Rd:61): Warning: missing </ul> before </div>
Maintainer: ‘Bingyuan Liu <adler1016@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bingyuan", "Liu/Yan", "Yuan/Qian"),
                      family = "Shi",
                      role = "aut"),
               person(given = "Bingyuan",
                      family = "Liu",
                      role = "cre",
                      email = "adler1016@gmail.com"))
as necessary.

The Description field contains
  to http://www.stat.ubc.ca/Research/TechReports/techreports/220.pdf for
Please enclose URLs in angle brackets (<...>).
'library' or 'require' call not declared from: ‘rbenchmark’
Found the following HTML validation problems:
write_sas.html:57:1 (write_sas.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Felix Cheysson <felix@cheysson.fr>’

The Description field contains
  <arXiv:2003.04314>. Some general use functions for Hawkes processes are
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Riadh Zaatour <zaatour_riadh@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riadh",
                    family = "Zaatour",
                    role = c("aut", "cre"),
                    email = "zaatour_riadh@yahoo.fr")
as necessary.
Maintainer: ‘Denise Rava <drava@ucsd.edu>’

The Description field contains
  R. (2021) <arXiv:2112.09535>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bijan",
                    family = "Seyednasrollah",
                    role = c("aut", "cre"),
                    email = "bijan.s.nasr@gmail.com")
as necessary.
Maintainer: ‘Woo-Young Ahn <wooyoung.ahn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Found the following HTML validation problems:
estimate_mode.html:47:1 (estimate_mode.Rd:10): Warning: missing </ul> before </div>
multiplot.html:55:1 (multiplot.Rd:14): Warning: missing </ul> before </div>
plot.hBayesDM.html:74:1 (plot.hBayesDM.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
checkRd: (-1) deff.sigma.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:35: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Mike Pratte <prattems@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "S."),
                      family = "Pratte",
                      role = "aut"),
               person(given = "Mike",
                      family = "Pratte",
                      role = "cre",
                      email = "prattems@gmail.com"))
as necessary.
Found the following HTML validation problems:
dpsdPosSample.html:76:1 (dpsdPosSample.Rd:29): Warning: missing </ul> before </div>
dpsdPosSim.html:107:1 (dpsdPosSim.Rd:29): Warning: missing </ul> before </div>
rtgamma.html:61:1 (rtgamma.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.sae.html:123:1 (plot.sae.Rd:60): Warning: missing </ul> before </div>
print.sae.html:55:1 (print.sae.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Alberto Lopez Moreno <bertolomo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pilar",
                      family = "Munyoz",
                      role = "aut"),
               person(given = c("Alberto", "Lopez"),
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "bertolomo@gmail.com"))
as necessary.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tianxi Li <tianxili@umn.edu>’

The Description field contains
  <arXiv:1810.01509>. The package also includes a data generating
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
hchinamap-shiny.html:68:1 (hchinamap-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘H. Battey <h.battey@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("H.", "H."),
                      family = "Hoeltgebaum",
                      role = "aut"),
               person(given = "H.",
                      family = "Battey",
                      role = "cre",
                      email = "h.battey@imperial.ac.uk"))
as necessary.
Maintainer: ‘Jie Qiao <qiaojie.chn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David A. Schoenfeld <dschoenfeld@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "A."),
                    family = "Schoenfeld",
                    role = c("aut", "cre"),
                    email = "dschoenfeld@mgh.harvard.edu")
as necessary.
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gero",
                    family = "Szepannek",
                    role = c("aut", "cre"),
                    email = "gero.szepannek@web.de")
as necessary.
checkRd: (-1) phenowheat.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) phenowheat.Rd:19: Lost braces in \enumerate; meant \describe ?
Found the following HTML validation problems:
HDCATE_R6Class.html:347:1 (HDCATE_R6Class.Rd:207): Warning: missing </ul> before </div>
HDCATE_R6Class.html:105:1 (HDCATE_R6Class.Rd:45): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:119:1 (HDCATE_R6Class.Rd:54): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:133:1 (HDCATE_R6Class.Rd:63): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:147:1 (HDCATE_R6Class.Rd:72): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:169:1 (HDCATE_R6Class.Rd:89): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:185:1 (HDCATE_R6Class.Rd:99): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:206:1 (HDCATE_R6Class.Rd:111): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:227:1 (HDCATE_R6Class.Rd:126): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:280:1 (HDCATE_R6Class.Rd:168): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:294:1 (HDCATE_R6Class.Rd:177): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:308:1 (HDCATE_R6Class.Rd:186): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:324:1 (HDCATE_R6Class.Rd:196): Warning: <h5> anchor "Usage" already defined
HDCATE_R6Class.html:330:1 (HDCATE_R6Class.Rd:200): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Xin Xu <xin.xu@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanzhong",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xin",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "xin.xu@yale.edu"),
               person(given = c("Jingyi", "Jessica"),
                      family = "Li",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:552:1 (inst/NEWS.Rd:249): Warning: missing </ul> before </div>
NEWS.html:166:1 (inst/NEWS.Rd:73): Warning: <h4> anchor "Help-pages" already defined
NEWS.html:181:1 (inst/NEWS.Rd:81): Warning: <h4> anchor "Bug-correction" already defined
NEWS.html:210:1 (inst/NEWS.Rd:95): Warning: <h4> anchor "New-features" already defined
NEWS.html:272:1 (inst/NEWS.Rd:123): Warning: <h4> anchor "New-features" already defined
NEWS.html:283:1 (inst/NEWS.Rd:128): Warning: <h4> anchor "Other" already defined
NEWS.html:315:1 (inst/NEWS.Rd:143): Warning: <h4> anchor "New-features" already defined
NEWS.html:326:1 (inst/NEWS.Rd:148): Warning: <h4> anchor "Bug-correction" already defined
NEWS.html:340:1 (inst/NEWS.Rd:154): Warning: <h4> anchor "Help-pages" already defined
NEWS.html:385:1 (inst/NEWS.Rd:176): Warning: <h4> anchor "New-features" already defined
NEWS.html:420:1 (inst/NEWS.Rd:189): Warning: <h4> anchor "Bug-correction" already defined
NEWS.html:431:1 (inst/NEWS.Rd:194): Warning: <h4> anchor "Help-pages" already defined
NEWS.html:446:1 (inst/NEWS.Rd:202): Warning: <h4> anchor "Bug-correction" already defined
NEWS.html:490:1 (inst/NEWS.Rd:226): Warning: <h4> anchor "New-features" already defined
NEWS.html:510:1 (inst/NEWS.Rd:234): Warning: <h4> anchor "Bug-correction" already defined
Found the following HTML validation problems:
getBIC.html:52:1 (getBIC.Rd:16): Warning: missing </ul> before </div>
getClsid.html:46:1 (getClsid.Rd:10): Warning: missing </ul> before </div>
getClustParam.html:46:1 (getClustParam.Rd:10): Warning: missing </ul> before </div>
getDiagCov.html:47:1 (getDiagCov.Rd:10): Warning: missing </ul> before </div>
getHmmChain.html:46:1 (getHmmChain.Rd:10): Warning: missing </ul> before </div>
getHmmParam.html:47:1 (getHmmParam.Rd:10): Warning: missing </ul> before </div>
getLoglikehd.html:55:1 (getLoglikehd.Rd:19): Warning: missing </ul> before </div>
getOptHMMVB.html:46:1 (getOptHMMVB.Rd:10): Warning: missing </ul> before </div>
getPrenumst.html:46:1 (getPrenumst.Rd:10): Warning: missing </ul> before </div>
getSize.html:46:1 (getSize.Rd:10): Warning: missing </ul> before </div>
getVb.html:46:1 (getVb.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Natasha Stewart <natashastewart@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Okamoto",
                      role = "aut"),
               person(given = "Natasha",
                      family = "Stewart",
                      role = c("aut", "cre"),
                      email = "natashastewart@utexas.edu"),
               person(given = c("Dr.", "Jun"),
                      family = "Li",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
hql_flush.html:49:1 (hql_flush.Rd:13): Warning: missing </ul> before </div>
set_char_data.html:58:1 (set_char_data.Rd:16): Warning: missing </ul> before </div>
set_data.html:58:1 (set_data.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Bin Guo <guobinscu@scu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bin",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "guobinscu@scu.edu.cn")
as necessary.
Maintainer: ‘Jiehuan Sun <jiehuan.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiehuan",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "jiehuan.sun@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lvma_utils.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mediate_hdmm.Rd: mediate
  mediate_hima.Rd: hdi
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
med_dat.html:59:1 (med_dat.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.corrected_lasso.html:51:1 (coef.corrected_lasso.Rd:12): Warning: missing </ul> before </div>
coef.gds.html:55:1 (coef.gds.Rd:14): Warning: missing </ul> before </div>
coef.gmu_lasso.html:56:1 (coef.gmu_lasso.Rd:15): Warning: missing </ul> before </div>
coef.gmus.html:56:1 (coef.gmus.Rd:15): Warning: missing </ul> before </div>
musalgorithm.html:58:1 (musalgorithm.Rd:16): Warning: missing </ul> before </div>
plot.cv_corrected_lasso.html:51:1 (plot.cv_corrected_lasso.Rd:12): Warning: missing </ul> before </div>
plot.cv_gds.html:51:1 (plot.cv_gds.Rd:12): Warning: missing </ul> before </div>
print.corrected_lasso.html:51:1 (print.corrected_lasso.Rd:12): Warning: missing </ul> before </div>
print.cv_corrected_lasso.html:51:1 (print.cv_corrected_lasso.Rd:12): Warning: missing </ul> before </div>
print.cv_gds.html:51:1 (print.cv_gds.Rd:12): Warning: missing </ul> before </div>
print.gds.html:51:1 (print.gds.Rd:12): Warning: missing </ul> before </div>
print.gmu_lasso.html:51:1 (print.gmu_lasso.Rd:12): Warning: missing </ul> before </div>
print.gmus.html:51:1 (print.gmus.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ran Zhao <Zhaoran@mail.sdu.edu.cn>’

The Description field contains
  al. (2023) <arXiv:2306.03317>. In this package, we also provide the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Martin Spindler <martin.spindler@gmx.de>’

The Description field contains
  (2016) <arXiv:1603.01700>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
methods.rlasso.html:80:1 (methods.rlasso.Rd:30): Warning: missing </ul> before </div>
methods.rlassoEffects.html:106:1 (methods.rlassoEffects.Rd:46): Warning: missing </ul> before </div>
methods.rlassoIV.html:76:1 (methods.rlassoIV.Rd:27): Warning: missing </ul> before </div>
methods.rlassoIVselectX.html:76:1 (methods.rlassoIVselectX.Rd:27): Warning: missing </ul> before </div>
methods.rlassoIVselectZ.html:76:1 (methods.rlassoIVselectZ.Rd:27): Warning: missing </ul> before </div>
methods.rlassoTE.html:76:1 (methods.rlassoTE.Rd:27): Warning: missing </ul> before </div>
methods.rlassologit.html:84:1 (methods.rlassologit.Rd:32): Warning: missing </ul> before </div>
methods.rlassologitEffects.html:80:1 (methods.rlassologitEffects.Rd:29): Warning: missing </ul> before </div>
methods.tsls.html:64:1 (methods.tsls.Rd:20): Warning: missing </ul> before </div>
Found the following HTML validation problems:
kmplot_raw.html:69:1 (kmplot_raw.Rd:25): Warning: missing </ul> before </div>
theme_hdnom.html:46:1 (theme_hdnom.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Rounak Dey <deyrnk@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rounak",
                      family = "Dey",
                      role = c("aut", "cre"),
                      email = "deyrnk@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
classify.html:50:1 (classify.Rd:12): Warning: missing </ul> before </div>
coef.dpGLM.html:51:1 (coef.dpGLM.Rd:12): Warning: missing </ul> before </div>
coef.hdpGLM.html:51:1 (coef.hdpGLM.Rd:12): Warning: missing </ul> before </div>
hdpGLM_classify.html:50:1 (hdpGLM_classify.Rd:12): Warning: missing </ul> before </div>
hdpGLM_simulateData.html:108:1 (hdpGLM_simulateData.Rd:48): Warning: missing </ul> before </div>
mcmc_info.dpGLM.html:51:1 (mcmc_info.dpGLM.Rd:13): Warning: missing </ul> before </div>
mcmc_info.hdpGLM.html:51:1 (mcmc_info.hdpGLM.Rd:13): Warning: missing </ul> before </div>
nclusters.html:46:1 (nclusters.Rd:10): Warning: missing </ul> before </div>
plot.hdpGLM.html:158:1 (plot.hdpGLM.Rd:79): Warning: missing </ul> before </div>
plot_beta.html:133:1 (plot_beta.Rd:63): Warning: missing </ul> before </div>
plot_beta_sim.html:54:1 (plot_beta_sim.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
alpha.html:50:1 (alpha.Rd:12): Warning: missing </ul> before </div>
shades.html:50:1 (shades.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘C. Jason Liang <liangcj@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘finda.Rd’:
    https://doi.org/10.1111/1467-9469.00320
    https://doi.org/10.1198/016214504000000845
  File ‘hds.Rd’:
    https://doi.org/10.1111/biom.12628
  File ‘hdslc.Rd’:
    https://doi.org/10.1111/biom.12628
    https://doi.org/10.1111/1467-9469.00320
    https://doi.org/10.1198/016214504000000845
Maintainer: ‘Wei Qian <weiqian@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Qian",
                      role = c("aut", "cre"),
                      email = "weiqian@stat.umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = "aut",
                      email = "yiyang@umn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Maintainer: ‘Pankaj Das <pankaj.das2@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pankaj",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "pankaj.das2@icar.gov.in",
                    comment = c(ORCID = "0000-0003-1672-2502"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘the_XXX.R’
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##stable
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##experimental
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plt-gartner-magic-chart.R’ ‘utils-save-to-excel.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ts-random-walk.R’ ‘ts-vva-plot.R’
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##stable
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Kerry Atkins <atkins.kerry04@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kerry",
                    family = "Atkins",
                    role = c("aut", "cre"),
                    email = "atkins.kerry04@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘heatex-package.Rd’:
    \keyword{Heat exchange,heat transfer}
Malformed Title field: should not end in a period.
Maintainer: ‘Shilin Zhao <shilin.zhao@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shilin",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "shilin.zhao@vanderbilt.edu"),
               person(given = "Linlin",
                      family = "Yin",
                      role = "aut"),
               person(given = "Yan",
                      family = "Guo",
                      role = "aut"),
               person(given = "Quanhu",
                      family = "Sheng",
                      role = "aut"),
               person(given = "Yu",
                      family = "Shyr",
                      role = "aut"))
as necessary.
checkRd: (-1) colByValue.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.}
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.heckmange.R’
Found the following HTML validation problems:
gen.beta.html:54:1 (gen.beta.Rd:14): Warning: missing </ul> before </div>
gen.c.html:61:1 (gen.c.Rd:19): Warning: missing </ul> before </div>
gen.example.html:50:1 (gen.example.Rd:12): Warning: missing </ul> before </div>
gen.gamma.html:54:1 (gen.gamma.Rd:14): Warning: missing </ul> before </div>
gen.list.html:63:1 (gen.list.Rd:20): Warning: missing </ul> before </div>
gen.no.shrink.html:47:1 (gen.no.shrink.Rd:11): Warning: missing </ul> before </div>
gen.shrink.html:53:1 (gen.shrink.Rd:15): Warning: missing </ul> before </div>
shrink.list.html:46:1 (shrink.list.Rd:10): Warning: missing </ul> before </div>
shrink.removes.html:50:1 (shrink.removes.Rd:12): Warning: missing </ul> before </div>
tree.replicate.html:64:1 (tree.replicate.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
check_cycle_inputs.html:53:1 (check_cycle_inputs.Rd:14): Warning: missing </ul> before </div>
resample_surv.html:61:1 (resample_surv.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Raoul Wadhwa <raoulwadhwa@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Geenens and Lafaye De Micheaux (2019) <arXiv:1810.10276v4>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Meissner <retep.meissner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Meissner",
                    role = c("aut", "cre"),
                    email = "retep.meissner@gmail.com")
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Juuso Parkkinen <juuso.parkkinen@iki.fi>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marco Notaro <marco.notaro@unimi.it>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
df.terms.html:57:1 (df.terms.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Willem Kruijer <willem.kruijer@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Willem",
                      family = "Kruijer",
                      role = c("aut", "cre"),
                      email = "willem.kruijer@wur.nl"),
               person(given = c("with", "a", "contribution", "from", "Ian", "White.", "Contains", "data", "collected", "by", "Padraic"),
                      family = "Flood",
                      role = "aut",
                      comment = "the internal function pin"),
               person(given = "Rik",
                      family = "Kooke.",
                      role = "aut"))
as necessary.
checkRd: (-1) marker_h2.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:41-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "david.morina@uab.cat"),
               person(given = "Manuel",
                      family = "Higueras",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut"),
               person(given = "María",
                      family = "Oliveira",
                      role = "aut"))
as necessary.
checkRd: (-1) glm.hermite.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:55-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:59-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:61-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:66-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) phermite.Rd:38: Lost braces; missing escapes or markup?
    38 |   {b} and \code{m} to be lower (or greater) than \code{q}.
       |   ^
Found the following HTML validation problems:
cor.html:81:1 (cor.Rd:32): Warning: missing </ul> before </div>
plot.hcdf_bivar.html:65:1 (plot.hcdf_bivar.Rd:19): Warning: missing </ul> before </div>
plot.hcdf_univar.html:65:1 (plot.hcdf_univar.Rd:19): Warning: missing </ul> before </div>
plot.hdensity_bivar.html:65:1 (plot.hdensity_bivar.Rd:19): Warning: missing </ul> before </div>
plot.hdensity_univar.html:65:1 (plot.hdensity_univar.Rd:19): Warning: missing </ul> before </div>
print.hcdf_bivar.html:57:1 (print.hcdf_bivar.Rd:15): Warning: missing </ul> before </div>
print.hcdf_univar.html:56:1 (print.hcdf_univar.Rd:15): Warning: missing </ul> before </div>
print.hdensity_bivar.html:57:1 (print.hdensity_bivar.Rd:15): Warning: missing </ul> before </div>
print.hdensity_univar.html:57:1 (print.hdensity_univar.Rd:15): Warning: missing </ul> before </div>
print.hermite_estimator_bivar.html:51:1 (print.hermite_estimator_bivar.Rd:12): Warning: missing </ul> before </div>
print.hermite_estimator_univar.html:51:1 (print.hermite_estimator_univar.Rd:12): Warning: missing </ul> before </div>
summary.hcdf_bivar.html:57:1 (summary.hcdf_bivar.Rd:15): Warning: missing </ul> before </div>
summary.hcdf_univar.html:57:1 (summary.hcdf_univar.Rd:15): Warning: missing </ul> before </div>
summary.hermite_estimator_bivar.html:59:1 (summary.hermite_estimator_bivar.Rd:14): Warning: missing </ul> before </div>
summary.hermite_estimator_univar.html:57:1 (summary.hermite_estimator_univar.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
checkRd: (-1) hero.Rd:67-68: Lost braces
    67 | then \code{\link[pbapply]{pblapply}} is used. If code{package ==
       |                                                      ^
checkRd: (-1) hero.Rd:69: Lost braces
    69 | code{package == "Rmpi"}, then \code{\link[Rmpi]{mpi.applyLB}} is used.}
       |     ^
Maintainer: ‘Haiyan Wang <hwang@ksu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haiyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "hwang@ksu.edu"),
               person(given = "Mickael",
                      family = "Akritas",
                      role = "aut"),
               person(given = "James",
                      family = "Higgins",
                      role = "aut"),
               person(given = "Dale",
                      family = "Blasi",
                      role = "aut"))
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

The Description field contains
  are described in Parast et al (2022) <arXiv:2209.08315>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Julian Taylor <julian.taylor@adelaide.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Taylor",
                    role = c("aut", "cre"),
                    email = "julian.taylor@adelaide.edu.au")
as necessary.
Maintainer: ‘Ben Fifield <benfifield@gmail.com>’

The Description field contains
  <doi:10.1111/rssb.12124> <arXiv:1412.5000>, and Ding, Feller, and
  Miratrix (2018) <doi:10.1080/01621459.2017.1407322> <arXiv:1605.06566>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) predictPair.Rd:20: Lost braces; missing escapes or markup?
    20 | A number in the set {-1, 0, 1}, where 1 means row1 is predicted to
       |                     ^
checkRd: (-1) predictPairInternal.Rd:18: Lost braces; missing escapes or markup?
    18 | A number in the set {-1, 0, 1}, where 1 means row1 is predicted to
       |                     ^
Found the following HTML validation problems:
zzDocumentationStubFormulaModelParams.html:56:1 (zzDocumentationStubFormulaModelParams.Rd:16): Warning: missing </ul> before </div>
zzDocumentationStubModelParams.html:56:1 (zzDocumentationStubModelParams.Rd:16): Warning: missing </ul> before </div>
zzDocumentationStubReverseCues.html:49:1 (zzDocumentationStubReverseCues.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.causal_net.html:51:1 (print.causal_net.Rd:12): Warning: missing </ul> before </div>
print.dependency_matrix.html:51:1 (print.dependency_matrix.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Cristian Yones <cyones@sinc.unl.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cristian",
                    family = "Yones",
                    role = c("aut", "cre"),
                    email = "cyones@sinc.unl.edu.ar")
as necessary.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz",
                    comment = "Jie Fu Yu made a prototype")
as necessary.
Found the following HTML validation problems:
hub_snapshot.html:85:1 (hub_snapshot.Rd:35): Warning: missing </ul> before </div>
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Maintainer: ‘Johann Pfitzinger <johann.pfitzinger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johann",
                    family = "Pfitzinger",
                    role = c("aut", "cre"),
                    email = "johann.pfitzinger@gmail.com")
as necessary.
Maintainer: ‘Kean Ming Tan <keanming@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kean", "Ming"),
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "keanming@umich.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.hglasso.Rd: layout.kamada.kawai, plot.igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Xia Shen <xia.shen@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xia",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "xia.shen@ki.se"),
               person(given = "Moudud",
                      family = "Alam",
                      role = "aut"),
               person(given = "Lars",
                      family = "Ronnegard",
                      role = "aut"))
as necessary.
checkRd: (-1) ohio.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) ohio.Rd:105: Escaped LaTeX specials: \&
Maintainer: ‘Xia Shen <xia.shen@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Moudud",
                      family = "Alam",
                      role = "aut"),
               person(given = "Lars",
                      family = "Ronnegard",
                      role = "aut"),
               person(given = "Xia",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "xia.shen@ki.se"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nobuki Takayama <takayama@math.kobe-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nobuki",
                      family = "Takayama",
                      role = c("aut", "cre"),
                      email = "takayama@math.kobe-u.ac.jp"),
               person(given = "Tamio",
                      family = "Koyama",
                      role = "aut"),
               person(given = "Tomonari",
                      family = "Sei",
                      role = "aut"),
               person(given = "Hiromasa",
                      family = "Nakayama",
                      role = "aut"),
               person(given = "Kenta",
                      family = "Nishiyama",
                      role = "aut"))
as necessary.
Maintainer: ‘Jinan Pang <pang.jinan@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "JinanPang",
                      role = c("aut", "cre")),
               person(family = "HuiLi",
                      role = "ctb"),
               person(given = "Jinan",
                      family = "Pang",
                      role = "cre",
                      email = "pang.jinan@qq.com"))
as necessary.
Maintainer: ‘Yongjian Kang <yongjiak@usc.edu>’

The Description field contains
  (2018)<arXiv:1606.03803>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
as.character.patient_flowchart.html:55:1 (as.character.patient_flowchart.Rd:14): Warning: missing </ul> before </div>
load_package_collection.html:60:1 (load_package_collection.Rd:25): Warning: missing </ul> before </div>
print.patient_flowchart.html:55:1 (print.patient_flowchart.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.spahetbootres.html:51:1 (print.spahetbootres.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Philip D. Waggoner <pdwaggoner@wm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "pdwaggoner@wm.edu")
as necessary.
Found the following HTML validation problems:
likert.html:606:1 (likert.Rd:524): Warning: <h3> anchor "_sec_note" already defined
likert.html:611:1 (likert.Rd:527): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Jason A. Osborne <jaosborn@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jason", "A."),
                      family = "Osborne",
                      role = c("aut", "cre"),
                      email = "jaosborn@ncsu.edu"),
               person(given = c("Christopher", "T."),
                      family = "Franck",
                      role = "aut"),
               person(given = "Bongseog",
                      family = "Choi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
mmglm-2nd-level-functions.html:55:1 (mmglm-2nd-level-functions.Rd:20): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_threshold.R’ ‘compute_chromosomes_length.R’
    ‘create_hidecan_plot.R’ ‘gwaspoly_helper_functions.R’
    ‘input_data_constructors.R’
Maintainer: ‘Thomas Lin Pedersen <thomasp85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "Lin"),
                    family = "Pedersen",
                    role = c("aut", "cre"),
                    email = "thomasp85@gmail.com")
as necessary.
checkRd: (-1) read.VCF.Rd:21: Lost braces
    21 | Reads a \url{https://samtools.github.io/hts-specs/}{Variant Call Format (VCF)} file into a BED object,
       |                                                    ^
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
checkRd: (-1) hierNet.Rd:28: Lost braces; missing escapes or markup?
    28 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |               ^
checkRd: (-1) hierNet.logistic.Rd:30: Lost braces; missing escapes or markup?
    30 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}  
       |               ^
checkRd: (-1) hierNet.logistic.Rd:63: Lost braces
    63 | \seealso{\link{predict.hierNet.logistic},link{hierNet.logistic.path}}
       |                                              ^
checkRd: (-1) hierNet.logistic.path.Rd:39: Lost braces; missing escapes or markup?
    39 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
checkRd: (-1) hierNet.path.Rd:38: Lost braces; missing escapes or markup?
    38 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
Maintainer: ‘Huaiyu Zhang <huaiyuzhang1988@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huaiyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "huaiyuzhang1988@gmail.com"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
RV.html:48:1 (RV.Rd:11): Warning: missing </ul> before </div>
makeRMFormat.html:48:1 (makeRMFormat.Rd:11): Warning: missing </ul> before </div>
predict.HEAVYmodel.html:56:1 (predict.HEAVYmodel.Rd:14): Warning: missing </ul> before </div>
rMPV.html:58:1 (rMPV.Rd:16): Warning: missing </ul> before </div>
rMRC.html:62:1 (rMRC.Rd:18): Warning: missing </ul> before </div>
rMedRQ.html:58:1 (rMedRQ.Rd:16): Warning: missing </ul> before </div>
rMedRV.html:58:1 (rMedRV.Rd:16): Warning: missing </ul> before </div>
rMinRQ.html:58:1 (rMinRQ.Rd:16): Warning: missing </ul> before </div>
rMinRV.html:58:1 (rMinRV.Rd:16): Warning: missing </ul> before </div>
rSV.html:58:1 (rSV.Rd:16): Warning: missing </ul> before </div>
salesCondition.html:53:1 (salesCondition.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Brandon LeBeau <lebebr01+highlightHTML@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.highlightHTML.html:51:1 (print.highlightHTML.Rd:12): Warning: missing </ul> before </div>
shinyRGB2hex.html:46:1 (shinyRGB2hex.Rd:10): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Maintainer: ‘Lifeng Lin <linl@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lifeng",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "linl@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Atanu Bhattacharjee <atanustat@gmail.com>’

The Description field contains
  <arXiv:2012.02102>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:2008.00863>.  X. Wang, R. Zhou, J. Ying, and D. P. Palomar
  Parametric Skew-t Distribution." <arXiv:2206.02412>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Rickmer Schulte <R.Schulte@campus.lmu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Heidi",
                      family = "Seibold",
                      role = "aut",
                      email = "Heidi.Seibold@uzh.ch"),
               person(given = "Monia",
                      family = "Mahling",
                      role = "aut",
                      email = "monia.mahling@stat.uni-muenchen.de"),
               person(given = "Sebastian",
                      family = "Linne",
                      role = "aut",
                      email = "Sebastian.Linne@campus.lmu.de"),
               person(given = "Felix",
                      family = "Guenther",
                      role = "aut",
                      email = "felix.guenther@stat.uni-muenchen.de"),
               person(given = "Rickmer",
                      family = "Schulte",
                      role = "cre",
                      email = "R.Schulte@campus.lmu.de"))
as necessary.
Found the following HTML validation problems:
check_det_hrz_restr_input.html:126:1 (check_det_hrz_restr_input.Rd:66): Warning: missing </ul> before </div>
det_alpha_eval_ar.html:58:1 (det_alpha_eval_ar.Rd:16): Warning: missing </ul> before </div>
det_threshold_eval_ar.html:58:1 (det_threshold_eval_ar.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Alexander Rix <alexrix@umich.edu>’

The Description field contains
  (HiGLASSO), developed by Boss et al (2020) <arXiv:2003.12844>, is a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/higlasso.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Yuancheng Zhu <yuancheng.zhu@gmail.com>’

The Description field contains
  <arXiv:1802.04876> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
plot.higrad.html:51:1 (plot.higrad.Rd:12): Warning: missing </ul> before </div>
print.higrad.html:51:1 (print.higrad.Rd:12): Warning: missing </ul> before </div>
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Maintainer: ‘Daijiang Li <daijianglee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daijiang",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "daijianglee@gmail.com")
as necessary.
Maintainer: ‘Alexander Tekles <alexander.tekles@soziologie.uni-muenchen.de>’

The Description field contains
  described in more detail in Bornmann et al. (2019) <arXiv:1905.11052>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alex T. Kalinka <alex.t.kalinka@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "T."),
                    family = "Kalinka",
                    role = c("aut", "cre"),
                    email = "alex.t.kalinka@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  numbers of balls belonging to the same n categories. <arXiv:1305.0717>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  http://github.com/xiangzhou09/hIRT
which should likely be
  http://github.com/xiangzhou09/hIRT/issues
instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘hgrm.Rd’:
    https://doi.org/10.1017/pan.2018.63
  File ‘hltm.Rd’:
    https://doi.org/10.1017/pan.2018.63
Found the following HTML validation problems:
print.hIRT.html:55:1 (print.hIRT.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Michael Milton <michael.r.milton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Milton",
                    role = c("aut", "cre"),
                    email = "michael.r.milton@gmail.com")
as necessary.
Found the following HTML validation problems:
HTS-class.html:55:1 (HTS-class.Rd:17): Warning: missing </ul> before </div>
TMatH-class.html:66:1 (TMatH-class.Rd:26): Warning: missing </ul> before </div>
TdistributionH-class.html:81:1 (TdistributionH-class.Rd:35): Warning: missing </ul> before </div>
plot-TdistributionH.html:62:1 (plot-TdistributionH.Rd:20): Warning: missing </ul> before </div>
times-methods.html:61:1 (times-methods.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Jouke Witteveen <j.witteveen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jouke",
                    family = "Witteveen",
                    role = c("aut", "cre"),
                    email = "j.witteveen@gmail.com")
as necessary.
Maintainer: ‘Lai Jiang <jian848@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lai",
                    family = "Jiang",
                    role = c("aut", "cre"),
                    email = "jian848@usc.edu")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘get_cond_alpha.Rd’:
    https://doi.org/10.1101/2020.02.03.924241
  File ‘hJAM_egger.Rd’:
    https://doi.org/10.1101/2020.02.03.924241
  File ‘hJAM_lnreg.Rd’:
    https://doi.org/10.1101/2020.02.03.924241
Found the following HTML validation problems:
utils.html:75:1 (utils.Rd:33): Warning: missing </ul> before </div>
checkRd: (-1) hlt.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:77-78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Samuel Thomas <samthoma@iu.edu>’

The Description field contains
  Monte Carlo" <arXiv:1701.02434>, Thomas, S., Tu, W. (2020) "Learning
  Hamiltonian Monte Carlo in R" <arXiv:2006.16194>, Gelman, A., Carlin,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Tree_Size_Ests.html:63:1 (Tree_Size_Ests.Rd:18): Warning: missing </ul> before </div>
Fdebug: multiple local function definitions for ‘deb’ with different
  formal arguments
html_describe_con: multiple local function definitions for ‘g’ with
  different formal arguments
Found the following HTML validation problems:
legendfunctions.html:48:1 (legendfunctions.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.
checkRd: (-1) nafracCalc.Rd:45: Lost braces
    45 |   as if code{y} were not of class \code{"multipleHmmDataSets"}.
       |             ^
Maintainer: ‘Jiwoong Kim <jwboys26@gmail.com>’

The Description field contains
  inverse. See Kim (2017) <arXiv:1710.09663> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/HMMEsolver.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Ting Wang <ting.wang@otago.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ting",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "ting.wang@otago.ac.nz"),
               person(given = "Wolfgang",
                      family = "Hayek",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Pletzer",
                      role = "aut"))
as necessary.
Maintainer: ‘Chu-Lan Michael Kao <chulankao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Chen",
                      role = "aut"),
               person(given = "Cheng-Der",
                      family = "Fuh",
                      role = "aut"),
               person(given = "Chu-Lan",
                      family = "Kao",
                      role = "aut"),
               person(given = c("S.", "C."),
                      family = "Kou.",
                      role = "aut"),
               person(given = c("Chu-Lan", "Michael"),
                      family = "Kao",
                      role = "cre",
                      email = "chulankao@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Ingmar Visser <i.visser@uva.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Berkley Shands <rpackages@biorankings.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patricio", "S."),
                      family = "La Rosa",
                      role = "aut"),
               person(given = "Elena",
                      family = "Deych",
                      role = "aut"),
               person(given = "Sharina",
                      family = "Carter",
                      role = "aut"),
               person(given = "Berkley",
                      family = "Shands",
                      role = c("aut", "cre"),
                      email = "rpackages@biorankings.com"),
               person(given = "Dake",
                      family = "Yang",
                      role = "aut"),
               person(given = c("William", "D."),
                      family = "Shannon",
                      role = "aut"))
as necessary.
Maintainer: ‘Berkley Shands <rpackages@biorankings.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patricio", "S."),
                      family = "La Rosa",
                      role = "aut"),
               person(given = "Elena",
                      family = "Deych",
                      role = "aut"),
               person(given = "Berkley",
                      family = "Shands",
                      role = c("aut", "cre"),
                      email = "rpackages@biorankings.com"),
               person(given = c("William", "D."),
                      family = "Shannon",
                      role = "aut"))
as necessary.
Maintainer: ‘Asger R. Pedersen <arpstat@outlook.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Asger", "R."),
                    family = "Pedersen",
                    role = c("aut", "cre"),
                    email = "arpstat@outlook.dk")
as necessary.
Found the following HTML validation problems:
coralPlotBeta.html:138:1 (coralPlotBeta.Rd:66): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘theme_hmsid.Rd’
Found the following HTML validation problems:
Deprecated.html:72:1 (Deprecated.Rd:31): Warning: missing </ul> before </div>
vec_cast.hms.html:57:1 (vec_cast.hms.Rd:16): Warning: missing </ul> before </div>
vec_ptype2.hms.html:57:1 (vec_ptype2.hms.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolas",
                    family = "Sauwen",
                    role = c("aut", "cre"),
                    email = "nicolas.sauwen@openanalytics.eu")
as necessary.
Found the following HTML validation problems:
initializeNMF.html:50:1 (initializeNMF.Rd:12): Warning: missing </ul> before </div>
checkRd: (-1) HOasso.Rd:43: Lost braces; missing escapes or markup?
    43 | Arguments \code{x} and {y} are \code{character} objects and can assume values   \code{"sout"}, \code{"dout"}, \code{"lout"}, \code{"sin"}, \code{"din"}, \code{"lin"} representing the out-strength, out-degree, out-log-strength, in-strength, in-degree, and in-log-strength respectively.
       |                        ^
Found the following HTML validation problems:
file_info_.html:46:1 (file_info_.Rd:10): Warning: missing </ul> before </div>
getsize.html:46:1 (getsize.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
scale_constraint_matrix.html:56:1 (scale_constraint_matrix.Rd:15): Warning: missing </ul> before </div>
update_objective.html:50:1 (update_objective.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘rstar_glm.Rd’ ‘run_sim_rstar_glm.Rd’ ‘sim_rstar_glm.Rd’
Found the following HTML validation problems:
op-definition.html:45:1 (op-definition.Rd:9): Warning: missing </ul> before </div>
Maintainer: ‘Lawrence Hudson <quicklizard@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lawrence",
                    family = "Hudson",
                    role = c("aut", "cre"),
                    email = "quicklizard@googlemail.com")
as necessary.
Found the following HTML validation problems:
check_status.html:46:1 (check_status.Rd:10): Warning: missing </ul> before </div>
clean_team_names_NCAA_merge.html:46:1 (clean_team_names_NCAA_merge.Rd:10): Warning: missing </ul> before </div>
rejoin_schedules.html:46:1 (rejoin_schedules.Rd:10): Warning: missing </ul> before </div>
request_with_proxy.html:68:1 (request_with_proxy.Rd:24): Warning: missing </ul> before </div>
year_to_season.html:46:1 (year_to_season.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
Maintainer: ‘Kevin Wright <kw.stat@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/kwstat/hopkins/
which should likely be
  https://github.com/kwstat/hopkins/issues
instead.
Found the following HTML validation problems:
HospiNet.html:128:1 (HospiNet.Rd:105): Warning: <h3> anchor "Methods" already defined
HospiNet.html:222:1 (HospiNet.Rd:164): Warning: <h5> anchor "Usage" already defined
HospiNet.html:228:1 (HospiNet.Rd:168): Warning: <h5> anchor "Returns" already defined
HospiNet.html:245:1 (HospiNet.Rd:177): Warning: <h5> anchor "Usage" already defined
HospiNet.html:251:1 (HospiNet.Rd:181): Warning: <h5> anchor "Arguments" already defined
HospiNet.html:268:1 (HospiNet.Rd:192): Warning: <h5> anchor "Returns" already defined
HospiNet.html:285:1 (HospiNet.Rd:201): Warning: <h5> anchor "Usage" already defined
HospiNet.html:291:1 (HospiNet.Rd:205): Warning: <h5> anchor "Arguments" already defined
get_matrix_bycluster.html:54:1 (get_matrix_bycluster.Rd:14): Warning: missing </ul> before </div>
get_metrics.html:86:1 (get_metrics.Rd:36): Warning: missing </ul> before </div>
checkRd: (-1) hd.ord.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Csaba Farago <farago@inf.u-szeged.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Csaba",
                    family = "Farago",
                    role = c("aut", "cre"),
                    email = "farago@inf.u-szeged.hu")
as necessary.
Maintainer: ‘Ryan Hafen <rhafen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ryan",
                    family = "Hafen",
                    role = c("aut", "cre"),
                    email = "rhafen@gmail.com")
as necessary.
Found the following HTML validation problems:
hpackedbubble-shiny.html:68:1 (hpackedbubble-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Potanin Bogdan <bogdanpotanin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Potanin",
                    family = "Bogdan",
                    role = c("aut", "cre"),
                    email = "bogdanpotanin@gmail.com")
as necessary.
Maintainer: ‘Alexandru Monahov <alexandru.monahov@proton.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandru",
                    family = "Monahov",
                    role = c("aut", "cre"),
                    email = "alexandru.monahov@proton.me")
as necessary.
Found the following HTML validation problems:
buildForecastIDs.heddata.html:60:1 (buildForecastIDs.heddata.Rd:17): Warning: missing </ul> before </div>
buildForecastIDs.rtdata.html:60:1 (buildForecastIDs.rtdata.Rd:17): Warning: missing </ul> before </div>
calcInSampleError.heddata.html:55:1 (calcInSampleError.heddata.Rd:14): Warning: missing </ul> before </div>
calcInSampleError.rtdata.html:55:1 (calcInSampleError.rtdata.Rd:14): Warning: missing </ul> before </div>
createKFoldData.rtdata.html:55:1 (createKFoldData.rtdata.Rd:14): Warning: missing </ul> before </div>
matchKFold.heddata.html:51:1 (matchKFold.heddata.Rd:12): Warning: missing </ul> before </div>
matchKFold.rtdata.html:51:1 (matchKFold.rtdata.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Loris Michel <michel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Loris",
                      family = "Michel",
                      role = c("aut", "cre"),
                      email = "michel@stat.math.ethz.ch"),
               person(given = "Jeffrey",
                      family = "Naef",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.06006>. An estimated lower-bound (with high-probability) on
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) HPLB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Daniel Antiporta <dantiporta@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "Antiporta;", "Matthew", "Matheson", "<mmathes4@jhu.edu>;", "Derek", "Ng", "<dng@jhu.edu>;", "Alvaro", "Munoz"),
                      family = "<amunoz@jhu.edu>",
                      role = "aut",
                      email = "amunoz@jhu.edu"),
               person(given = "Daniel",
                      family = "Antiporta",
                      role = "cre",
                      email = "dantiporta@jhu.edu"))
as necessary.
'library' or 'require' calls not declared from:
  ‘Ecdat’ ‘LowRankQP’ ‘VGAM’ ‘e1071’ ‘fda’ ‘fda.usc’ ‘mlbench’ ‘nlme’
  ‘quantreg’ ‘refund’ ‘rgl’ ‘rstan’
Found the following HTML validation problems:
hsemmodeling.html:139:1 (hsemmodeling.Rd:89): Warning: missing </ul> before </div>
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Giacomo Ceoldo <giacomo.ceoldo@usi.ch>’

The Description field contains
  <arXiv:2304.09809>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
choose.next.html:68:1 (choose.next.Rd:20): Warning: missing </ul> before </div>
fit.submodel.html:70:1 (fit.submodel.Rd:22): Warning: missing </ul> before </div>
lm_proj.html:63:1 (lm_proj.Rd:19): Warning: missing </ul> before </div>
print.hsstan.html:51:1 (print.hsstan.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Longhai Li <longhai@math.usask.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Computation and Simulation, 88:14, 2827-2851, <arXiv:1405.3319>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/HTLR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Sangchul Park <mail@sangchul.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sangchul",
                    family = "Park",
                    role = c("aut", "cre"),
                    email = "mail@sangchul.com")
as necessary.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Found the following HTML validation problems:
prAttr4RgroupAdd.html:57:1 (prAttr4RgroupAdd.Rd:16): Warning: missing </ul> before </div>
prExtractElementsAndConvertToTbl.html:50:1 (prExtractElementsAndConvertToTbl.Rd:13): Warning: missing </ul> before </div>
prGetAlign.html:61:1 (prGetAlign.Rd:23): Warning: missing </ul> before </div>
prGetRgroupLine.html:99:1 (prGetRgroupLine.Rd:47): Warning: missing </ul> before </div>
prSkipRownames.html:50:1 (prSkipRownames.Rd:14): Warning: missing </ul> before </div>
File ‘htmltools/libs/htmltools.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
as.tags.html:52:1 (as.tags.Rd:12): Warning: missing </ul> before </div>
knitr_methods.html:61:1 (knitr_methods.Rd:24): Warning: missing </ul> before </div>
print.html.html:62:1 (print.html.Rd:20): Warning: missing </ul> before </div>
save_html.html:71:1 (save_html.Rd:24): Warning: missing </ul> before </div>
singleton.html:55:1 (singleton.Rd:15): Warning: missing </ul> before </div>
tagQuery.html:229:1 (tagQuery.Rd:127): Warning: <h5> anchor "Children" already defined
tagQuery.html:245:1 (tagQuery.Rd:136): Warning: <h5> anchor "Siblings" already defined
urlEncodePath.html:48:1 (urlEncodePath.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘"Markus Loecher, Berlin School of Economics and Law (BSEL)" <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "\"Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = c("Berlin", "School", "of"),
                      family = "Economics",
                      role = "aut"),
               person(family = "Law\"",
                      role = "aut",
                      email = "markus.loecher@gmail.com",
                      comment = "BSEL"))
as necessary.
Found the following HTML validation problems:
getDependency.html:50:1 (getDependency.Rd:12): Warning: missing </ul> before </div>
saveWidget.html:82:1 (saveWidget.Rd:34): Warning: missing </ul> before </div>
setWidgetIdSeed.html:62:1 (setWidgetIdSeed.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Andrea Rau <andrea.rau@jouy.inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrea",
                      family = "Rau",
                      role = c("aut", "cre"),
                      email = "andrea.rau@jouy.inra.fr"),
               person(given = "Gilles",
                      family = "Celeux",
                      role = "aut"),
               person(given = "Marie-Laure",
                      family = "Martin-Magniette",
                      role = "aut"),
               person(given = c("Cathy", "Maugis-"),
                      family = "Rabusseau",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
helper-functions.html:49:1 (helper-functions.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Andreas Westfeld <andreas.westfeld@htw-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eryk", "Witold"),
                      family = "Wolski",
                      role = "aut"),
               person(given = "Andreas",
                      family = "Westfeld",
                      role = c("aut", "cre"),
                      email = "andreas.westfeld@htw-dresden.de"))
as necessary.
checkRd: (-1) simplePostToHost.Rd:14: Escaped LaTeX specials: \&
Found the following HTML validation problems:
with_mock_dir.html:68:1 (with_mock_dir.Rd:21): Warning: missing </ul> before </div>
Found the following HTML validation problems:
PipeServer.html:84:1 (PipeServer.Rd:56): Warning: <h3> anchor "Methods" already defined
PipeServer.html:139:1 (PipeServer.Rd:90): Warning: <h5> anchor "Usage" already defined
PipeServer.html:153:1 (PipeServer.Rd:99): Warning: <h5> anchor "Usage" already defined
Server.html:66:1 (Server.Rd:44): Warning: <h3> anchor "Methods" already defined
Server.html:120:1 (Server.Rd:69): Warning: <h5> anchor "Usage" already defined
Server.html:134:1 (Server.Rd:78): Warning: <h5> anchor "Usage" already defined
Server.html:148:1 (Server.Rd:87): Warning: <h5> anchor "Usage" already defined
Server.html:162:1 (Server.Rd:96): Warning: <h5> anchor "Usage" already defined
Server.html:176:1 (Server.Rd:105): Warning: <h5> anchor "Usage" already defined
Server.html:190:1 (Server.Rd:114): Warning: <h5> anchor "Usage" already defined
WebServer.html:84:1 (WebServer.Rd:56): Warning: <h3> anchor "Methods" already defined
WebServer.html:139:1 (WebServer.Rd:90): Warning: <h5> anchor "Usage" already defined
WebServer.html:153:1 (WebServer.Rd:99): Warning: <h5> anchor "Usage" already defined
WebSocket.html:86:1 (WebSocket.Rd:84): Warning: <h3> anchor "Methods" already defined
WebSocket.html:137:1 (WebSocket.Rd:108): Warning: <h5> anchor "Usage" already defined
WebSocket.html:151:1 (WebSocket.Rd:117): Warning: <h5> anchor "Usage" already defined
WebSocket.html:165:1 (WebSocket.Rd:126): Warning: <h5> anchor "Usage" already defined
WebSocket.html:179:1 (WebSocket.Rd:135): Warning: <h5> anchor "Usage" already defined
WebSocket.html:195:1 (WebSocket.Rd:145): Warning: <h5> anchor "Usage" already defined
startDaemonizedServer.html:66:1 (startDaemonizedServer.Rd:20): Warning: missing </ul> before </div>
staticPathOptions.html:91:1 (staticPathOptions.Rd:45): Warning: missing </ul> before </div>
stopDaemonizedServer.html:48:1 (stopDaemonizedServer.Rd:11): Warning: missing </ul> before </div>
Found the following HTML validation problems:
StreamingBody.html:261:1 (StreamingBody.Rd:141): Warning: missing </ul> before </div>
StreamingBody.html:113:1 (StreamingBody.Rd:53): Warning: <h5> anchor "Usage" already defined
StreamingBody.html:119:1 (StreamingBody.Rd:57): Warning: <h5> anchor "Arguments" already defined
StreamingBody.html:142:1 (StreamingBody.Rd:70): Warning: <h5> anchor "Usage" already defined
StreamingBody.html:148:1 (StreamingBody.Rd:74): Warning: <h5> anchor "Arguments" already defined
StreamingBody.html:171:1 (StreamingBody.Rd:87): Warning: <h5> anchor "Usage" already defined
StreamingBody.html:188:1 (StreamingBody.Rd:98): Warning: <h5> anchor "Usage" already defined
StreamingBody.html:206:1 (StreamingBody.Rd:110): Warning: <h5> anchor "Usage" already defined
StreamingBody.html:222:1 (StreamingBody.Rd:120): Warning: <h5> anchor "Usage" already defined
StreamingBody.html:238:1 (StreamingBody.Rd:130): Warning: <h5> anchor "Usage" already defined
StreamingBody.html:244:1 (StreamingBody.Rd:134): Warning: <h5> anchor "Arguments" already defined
oauth_cache_clear.html:59:1 (oauth_cache_clear.Rd:19): Warning: missing </ul> before </div>
oauth_flow_auth_code_url.html:87:1 (oauth_flow_auth_code_url.Rd:31): Warning: missing </ul> before </div>
progress_bars.html:112:1 (progress_bars.Rd:53): Warning: missing </ul> before </div>
signal_total_pages.html:47:1 (signal_total_pages.Rd:10): Warning: missing </ul> before </div>
'::' or ':::' import not declared from: ‘rstudioapi’
Found the following HTML validation problems:
guess_media.html:46:1 (guess_media.Rd:10): Warning: missing </ul> before </div>
hmac_sha1.html:50:1 (hmac_sha1.Rd:12): Warning: missing </ul> before </div>
init_oauth1.0.html:70:1 (init_oauth1.0.Rd:26): Warning: missing </ul> before </div>
init_oauth2.0.html:144:1 (init_oauth2.0.Rd:86): Warning: missing </ul> before </div>
modify_url.html:62:1 (modify_url.Rd:23): Warning: missing </ul> before </div>
revoke_all.html:49:1 (revoke_all.Rd:11): Warning: missing </ul> before </div>
sha1_hash.html:54:1 (sha1_hash.Rd:14): Warning: missing </ul> before </div>
status_code.html:46:1 (status_code.Rd:10): Warning: missing </ul> before </div>
write_function.html:46:1 (write_function.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
hubeau.html:245:1 (hubeau.Rd:131): Warning: missing </ul> before </div>
Found the following HTML validation problems:
component_outputs.html:64:1 (component_outputs.Rd:18): Warning: missing </ul> before </div>
fweights.html:58:1 (fweights.Rd:16): Warning: missing </ul> before </div>
model_outputs.html:68:1 (model_outputs.Rd:21): Warning: missing </ul> before </div>
weights.html:58:1 (weights.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Paul Richardson <p.richardson.54391@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Richardson",
                    role = c("aut", "cre"),
                    email = "p.richardson.54391@gmail.com")
as necessary.
Maintainer: ‘Haoming Jiang <jianghm.ustc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haoming",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "jianghm.ustc@gmail.com"),
               person(given = "Xinyu",
                      family = "Fei",
                      role = "aut"),
               person(given = "Han",
                      family = "Liu",
                      role = "aut"),
               person(given = "Kathryn",
                      family = "Roeder",
                      role = "aut"),
               person(given = "John",
                      family = "Lafferty",
                      role = "aut"),
               person(given = "Larry",
                      family = "Wasserman",
                      role = "aut"),
               person(given = "Xingguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Tuo",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Dustin Sallings <dustin@spy.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dustin",
                    family = "Sallings",
                    role = c("aut", "cre"),
                    email = "dustin@spy.net")
as necessary.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

The Description field contains
  (https://github.com/ chovy/humanparser) provides functions for parsing
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Jun Cai <cai-j12@mails.tsinghua.edu.cn>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Natalia Novoselova <novos65@mail.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalia", "Novoselova,Junxi", "Wang,Jialiang"),
                      family = "Li",
                      role = "aut"),
               person(given = c("Frank", "Pessler,Frank"),
                      family = "Klawonn",
                      role = "aut"),
               person(given = "Natalia",
                      family = "Novoselova",
                      role = "cre",
                      email = "novos65@mail.ru"))
as necessary.
checkRd: (-1) CalcROC.Rd:47: Lost braces
    47 | The accuracy of the classifier is the mean value of dQuote{(optSn, optSp)} for two-class problem and the mean value of \dQuote{(optSn, optSp,optS3)} for three-class problem.
       |                                                           ^
Found the following HTML validation problems:
bench_system_time.html:46:1 (bench_system_time.Rd:10): Warning: missing </ul> before </div>
character2integer.html:66:1 (character2integer.Rd:21): Warning: missing </ul> before </div>
every_int.html:50:1 (every_int.Rd:12): Warning: missing </ul> before </div>
which3.html:64:1 (which3.Rd:24): Warning: missing </ul> before </div>
xor2.html:51:1 (xor2.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
aliases.html:65:1 (aliases.Rd:32): Warning: missing </ul> before </div>
drop_empty_cols.html:52:1 (drop_empty_cols.Rd:14): Warning: missing </ul> before </div>
replace_pattern_in.html:97:1 (replace_pattern_in.Rd:43): Warning: missing </ul> before </div>
report_error.html:78:1 (report_error.Rd:30): Warning: missing </ul> before </div>
Found the following HTML validation problems:
huxtable-news.html:78:1 (huxtable-news.Rd:36): Warning: <h4> anchor "Breaking-changes" already defined
huxtable-news.html:90:1 (huxtable-news.Rd:43): Warning: <h4> anchor "Other-changes" already defined
huxtable-news.html:426:1 (huxtable-news.Rd:233): Warning: <h4> anchor "Breaking-changes" already defined
huxtable-news.html:597:1 (huxtable-news.Rd:344): Warning: <h4> anchor "Other-changes" already defined
huxtable-news.html:1213:1 (huxtable-news.Rd:669): Warning: <h4> anchor "Breaking-changes" already defined
huxtable-news.html:1325:1 (huxtable-news.Rd:728): Warning: <h4> anchor "Breaking-changes" already defined
huxtable-news.html:1376:1 (huxtable-news.Rd:757): Warning: <h4> anchor "Breaking-changes" already defined
huxtable-news.html:1501:1 (huxtable-news.Rd:822): Warning: <h4> anchor "Breaking-changes" already defined
huxtable-news.html:1650:1 (huxtable-news.Rd:896): Warning: <h4> anchor "Breaking-changes" already defined
mapping-params.html:62:1 (mapping-params.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘John Maindonald <jhmaindonald@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Maindonald",
                      role = c("aut", "cre"),
                      email = "jhmaindonald@gmail.com"),
               person(given = c("with", "\\code{hwexact}", "from", "Randall"),
                      family = "Johnson.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sergio Venturini <sergio.venturini@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "sergio.venturini@unicatt.it")
as necessary.
Found the following HTML validation problems:
hwordcloud-shiny.html:68:1 (hwordcloud-shiny.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Gregoire Pau <gregoire.pau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gregoire",
                    family = "Pau",
                    role = c("aut", "cre"),
                    email = "gregoire.pau@gmail.com")
as necessary.
Maintainer: ‘Matthew Cserhati <csmatyi@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Cserhati",
                    role = c("aut", "cre"),
                    email = "csmatyi@protonmail.com")
as necessary.
Maintainer: ‘Martin Keller-Ressel <martin.keller-ressel@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Keller-Ressel",
                    role = c("aut", "cre"),
                    email = "martin.keller-ressel@tu-dresden.de")
as necessary.

The Description field contains
  <arXiv:1903.08977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Myles English <myles@rockhead.biz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Myles",
                    family = "English",
                    role = c("aut", "cre"),
                    email = "myles@rockhead.biz")
as necessary.
Found the following HTML validation problems:
plot-piperplot-method.html:55:1 (plot-piperplot-method.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Bettina Grün <Bettina.Gruen@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nick Bond <n.bond@latrobe.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Bond",
                    role = c("aut", "cre"),
                    email = "n.bond@latrobe.edu.au")
as necessary.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.
Maintainer: ‘Ezequiel Toum <etoum@mendoza-conicet.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ezequiel",
                    family = "Toum",
                    role = c("aut", "cre"),
                    email = "etoum@mendoza-conicet.gob.ar")
as necessary.
checkRd: (-1) extractPeriod.Rd:57: Lost braces
    57 | NOTE: all the dates in the datalist should follow the format in ?as.Date{base}.
       |                                                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘psubs.Rd’ ‘pwa.Rd’ ‘tennis.Rd’
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Scott",
                    role = c("aut", "cre"),
                    email = "d.scott@auckland.ac.nz")
as necessary.
Maintainer: ‘Michael Scholz <michael.scholz@th-deg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Scholz",
                    role = c("aut", "cre"),
                    email = "michael.scholz@th-deg.de")
as necessary.
Found the following HTML validation problems:
FNTN_matrix.recycle.html:83:1 (FNTN_matrix.recycle.Rd:33): Warning: missing </ul> before </div>
contract.html:93:1 (contract.Rd:39): Warning: missing </ul> before </div>
contract.update.html:103:1 (contract.update.Rd:45): Warning: missing </ul> before </div>
coreloop.html:50:1 (coreloop.Rd:12): Warning: missing </ul> before </div>
expand.html:78:1 (expand.Rd:30): Warning: missing </ul> before </div>
expand.update.html:103:1 (expand.update.Rd:45): Warning: missing </ul> before </div>
f.html:58:1 (f.Rd:16): Warning: missing </ul> before </div>
fill_FNTN_matrix.html:62:1 (fill_FNTN_matrix.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘David J. Marchette <dmarchette@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J."),
                    family = "Marchette",
                    role = c("aut", "cre"),
                    email = "dmarchette@gmail.com")
as necessary.
Found the following HTML validation problems:
Future-functions.html:69:1 (Future-functions.Rd:36): Warning: missing </ul> before </div>
quickdf.html:52:1 (quickdf.Rd:13): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hypothesis-api.R’
Found the following HTML validation problems:
api_params.html:53:1 (api_params.Rd:14): Warning: missing </ul> before </div>
get_profile.html:51:1 (get_profile.Rd:13): Warning: missing </ul> before </div>
get_profile_groups.html:51:1 (get_profile_groups.Rd:13): Warning: missing </ul> before </div>
hs_api_handler.html:69:1 (hs_api_handler.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
hs_reply.html:62:1 (hs_reply.Rd:18): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘equations.R’
Found the following HTML validation problems:
formula-set.html:54:1 (formula-set.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Faustin GASHAKAMBA <gashakamba@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Faustin",
                    family = "GASHAKAMBA",
                    role = c("aut", "cre"),
                    email = "gashakamba@gmail.com")
as necessary.
Found the following significant warnings:
  Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘hypsoLoop’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hypsoLoop.Rcheck/00install.out’ for details.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  calc_areas.Rd: area, values
  generateHypsoTables.Rd: crop, mask, classify
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
hyreg2.html:163:1 (hyreg2.Rd:91): Warning: <h3> anchor "formula" already defined
hyreg2.html:177:1 (hyreg2.Rd:104): Warning: <h3> anchor "data" already defined
hyreg2_het.html:175:1 (hyreg2_het.Rd:99): Warning: <h3> anchor "formula" already defined
hyreg2_het.html:189:1 (hyreg2_het.Rd:112): Warning: <h3> anchor "data" already defined
Maintainer: ‘"Stefan Rass, on behalf of the Austrian Institute of Technology" <stefan.rass@jku.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Rass",
                      role = "aut"),
               person(given = "Sandra",
                      family = "Koenig",
                      role = "aut"),
               person(given = "Ali",
                      family = "Alshawish",
                      role = "aut"),
               person(given = "\"Stefan",
                      family = "Rass",
                      role = "cre"),
               person(given = c("on", "behalf", "of", "the", "Austrian", "Institute", "of"),
                      family = "Technology\"",
                      role = "cre",
                      email = "stefan.rass@jku.at"))
as necessary.
Maintainer: ‘Spencer Maynes <smaynes89@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Maynes",
                      role = c("aut", "cre"),
                      email = "smaynes89@gmail.com"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"),
               person(given = "Anne",
                      family = "Parkhurst",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
find_best_candidates.html:54:1 (find_best_candidates.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘John Lawson <lawsonjsl7net@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lawson",
                    role = c("aut", "cre"),
                    email = "lawsonjsl7net@gmail.com")
as necessary.
Maintainer: ‘Ran Zhao <Zhaoran@mail.sdu.edu.cn>’

The Description field contains
  in He et al. (2023) <arXiv:2301.00360>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.bootfit.html:51:1 (print.bootfit.Rd:12): Warning: missing </ul> before </div>
print.outfit.html:51:1 (print.outfit.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
plot.html:50:1 (plot.Rd:12): Warning: missing </ul> before </div>
plot_fit.html:56:1 (plot_fit.Rd:15): Warning: missing </ul> before </div>
plot_forecast.html:57:1 (plot_forecast.Rd:16): Warning: missing </ul> before </div>
summary.html:51:1 (summary.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Satoshi Takahashi <takahasi@lisboa.ics.nara-wu.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Satoshi",
                    family = "Takahashi",
                    role = c("aut", "cre"),
                    email = "takahasi@lisboa.ics.nara-wu.ac.jp")
as necessary.
Maintainer: ‘Dan Martin <dpmartin42@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Martin",
                    role = c("aut", "cre"),
                    email = "dpmartin42@gmail.com")
as necessary.
checkRd: (-1) IATData.Rd:24: Lost braces; missing escapes or markup?
    24 | Dan Martin {dpmartin42@gmail.com}
       |            ^
Found the following HTML validation problems:
plotIIV.html:71:1 (plotIIV.Rd:23): Warning: missing </ul> before </div>
plotIndVar.html:69:1 (plotIndVar.Rd:21): Warning: missing </ul> before </div>
plotItemErr.html:59:1 (plotItemErr.Rd:16): Warning: missing </ul> before </div>
plotItemVar.html:69:1 (plotItemVar.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Shengbin Ye <sy53@rice.edu>’

The Description field contains
  <arXiv:2110.10195>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
call_data_ibb.html:53:1 (call_data_ibb.Rd:15): Warning: missing </ul> before </div>
get_all_data_sources.html:46:1 (get_all_data_sources.Rd:10): Warning: missing </ul> before </div>
get_all_detailed_info.html:46:1 (get_all_detailed_info.Rd:10): Warning: missing </ul> before </div>
get_ibb_wifi_daily_data_usage.html:48:1 (get_ibb_wifi_daily_data_usage.Rd:12): Warning: missing </ul> before </div>
get_ibb_wifi_daily_new_subscribers.html:48:1 (get_ibb_wifi_daily_new_subscribers.Rd:12): Warning: missing </ul> before </div>
get_ibb_wifi_new_subscribers_by_location.html:48:1 (get_ibb_wifi_new_subscribers_by_location.Rd:12): Warning: missing </ul> before </div>
set_query_limit.html:46:1 (set_query_limit.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Francisco Javier Luna-Vazquez <frahik@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/frahik/IBCF.MTME/issues/new
which should likely be
  https://github.com/frahik/IBCF.MTME/issues/new/issues
instead.
Found the following HTML validation problems:
barplot.IBCFY.html:55:1 (barplot.IBCFY.Rd:14): Warning: missing </ul> before </div>
plot.IBCF.html:55:1 (plot.IBCF.Rd:14): Warning: missing </ul> before </div>
summary.IBCF.html:60:1 (summary.IBCF.Rd:17): Warning: missing </ul> before </div>
summary.IBCFY.html:55:1 (summary.IBCFY.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Taehyeon Koo <tk587@stat.rutgers.edu>’

The Description field contains
  (2024) <arXiv:2405.19312>, it includes block-level estimators and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kuang Zhou <kzhoumath@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kuang", "Zhou;", "Arnaud", "Martin"),
                      family = "<arnaud.martin@univ-rennes1.fr>",
                      role = "aut",
                      email = "arnaud.martin@univ-rennes1.fr"),
               person(given = "Kuang",
                      family = "Zhou",
                      role = "cre",
                      email = "kzhoumath@163.com"))
as necessary.

The Description field contains
  Philippe Smets <arXiv:1304.1122>, evidence combination, evidence
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
add_characteristic.html:54:1 (add_characteristic.Rd:14): Warning: missing </ul> before </div>
add_characteristic.population.html:55:1 (add_characteristic.population.Rd:14): Warning: missing </ul> before </div>
age_pyramids.html:54:1 (age_pyramids.Rd:14): Warning: missing </ul> before </div>
check_intensity_code.html:46:1 (check_intensity_code.Rd:10): Warning: missing </ul> before </div>
check_interaction_code.html:46:1 (check_interaction_code.Rd:10): Warning: missing </ul> before </div>
check_kernel_code.html:46:1 (check_kernel_code.Rd:10): Warning: missing </ul> before </div>
compatibility_chars_events.html:50:1 (compatibility_chars_events.Rd:12): Warning: missing </ul> before </div>
compatibility_pop_model.html:50:1 (compatibility_pop_model.Rd:12): Warning: missing </ul> before </div>
get_characteristics.html:50:1 (get_characteristics.Rd:12): Warning: missing </ul> before </div>
id_complete.html:47:1 (id_complete.Rd:10): Warning: missing </ul> before </div>
print.event.html:51:1 (print.event.Rd:12): Warning: missing </ul> before </div>
print.model.html:51:1 (print.model.Rd:12): Warning: missing </ul> before </div>
summary.event.html:51:1 (summary.event.Rd:12): Warning: missing </ul> before </div>
summary.model.html:51:1 (summary.model.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ib-negbin-method.html:70:1 (ib-negbin-method.Rd:23): Warning: missing </ul> before </div>
simulation-betareg-method.html:60:1 (simulation-betareg-method.Rd:17): Warning: missing </ul> before </div>
simulation-glm-method.html:60:1 (simulation-glm-method.Rd:17): Warning: missing </ul> before </div>
simulation-glmerMod-method.html:56:1 (simulation-glmerMod-method.Rd:15): Warning: missing </ul> before </div>
simulation-lm-method.html:60:1 (simulation-lm-method.Rd:17): Warning: missing </ul> before </div>
simulation-lmerMod-method.html:56:1 (simulation-lmerMod-method.Rd:15): Warning: missing </ul> before </div>
simulation-negbin-method.html:60:1 (simulation-negbin-method.Rd:17): Warning: missing </ul> before </div>
simulation-nls-method.html:60:1 (simulation-nls-method.Rd:17): Warning: missing </ul> before </div>
simulation-vglm-method.html:60:1 (simulation-vglm-method.Rd:17): Warning: missing </ul> before </div>
summary-IbGlmer-method.html:52:1 (summary-IbGlmer-method.Rd:13): Warning: missing </ul> before </div>
summary-IbLmer-method.html:52:1 (summary-IbLmer-method.Rd:13): Warning: missing </ul> before </div>
summary-IbNls-method.html:52:1 (summary-IbNls-method.Rd:13): Warning: missing </ul> before </div>
summary-IbVglm-method.html:52:1 (summary-IbVglm-method.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  article (Gosiewska and Biecek 2019) <arXiv:1903.11420> This package is
  a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) setServerLogLevel.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:24: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.
Maintainer: ‘Cyprien Mbogning <cyprien.mbogning@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cyprien",
                      family = "Mbogning",
                      role = c("aut", "cre"),
                      email = "cyprien.mbogning@gmail.com"),
               person(given = "Philippe",
                      family = "Broet",
                      role = "aut"))
as necessary.
Maintainer: ‘Oscar M. Rueda <Oscar.Rueda@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Oscar", "M"),
                      family = "Rueda",
                      role = "aut"),
               person(given = c("Jose", "Antonio", "Seoane"),
                      family = "Fernandez",
                      role = "aut"),
               person(given = c("Oscar", "M."),
                      family = "Rueda",
                      role = "cre",
                      email = "Oscar.Rueda@mrc-bsu.cam.ac.uk"))
as necessary.
Found the following HTML validation problems:
ical_clean_ical_parsed.html:46:1 (ical_clean_ical_parsed.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Daliang Ning <ningdaliang@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daliang",
                    family = "Ning",
                    role = c("aut", "cre"),
                    email = "ningdaliang@ou.edu")
as necessary.
Found the following HTML validation problems:
CheckDBSClassInVCF.html:55:1 (CheckDBSClassInVCF.Rd:15): Warning: missing </ul> before </div>
CheckSBSClassInVCF.html:55:1 (CheckSBSClassInVCF.Rd:15): Warning: missing </ul> before </div>
ConvertICAMSCatalogToSigProSBS96.html:56:1 (ConvertICAMSCatalogToSigProSBS96.Rd:16): Warning: missing </ul> before </div>
GenerateVCFsFromIndelSimpleFile1.html:55:1 (GenerateVCFsFromIndelSimpleFile1.Rd:15): Warning: missing </ul> before </div>
GenerateVCFsFromIndelSimpleFiles.html:67:1 (GenerateVCFsFromIndelSimpleFiles.Rd:25): Warning: missing </ul> before </div>
Plot96PartOfCompositeToPDF.html:54:1 (Plot96PartOfCompositeToPDF.Rd:14): Warning: missing </ul> before </div>
ReadCatalogErrReturn.html:59:1 (ReadCatalogErrReturn.Rd:17): Warning: missing </ul> before </div>
ReadCatalogInternal.html:83:1 (ReadCatalogInternal.Rd:34): Warning: missing </ul> before </div>
Restaple1536.html:50:1 (Restaple1536.Rd:13): Warning: missing </ul> before </div>
Restaple96.html:50:1 (Restaple96.Rd:13): Warning: missing </ul> before </div>
StopIfCatalogTypeIllegal.html:46:1 (StopIfCatalogTypeIllegal.Rd:10): Warning: missing </ul> before </div>
StopIfNrowIllegal.html:46:1 (StopIfNrowIllegal.Rd:10): Warning: missing </ul> before </div>
StopIfRegionIllegal.html:46:1 (StopIfRegionIllegal.Rd:10): Warning: missing </ul> before </div>
StopIfTranscribedRegionIllegal.html:46:1 (StopIfTranscribedRegionIllegal.Rd:10): Warning: missing </ul> before </div>
TestPlotCatCOMPOSITE.html:64:1 (TestPlotCatCOMPOSITE.Rd:22): Warning: missing </ul> before </div>
Unstaple1536.html:47:1 (Unstaple1536.Rd:11): Warning: missing </ul> before </div>
Unstaple78.html:47:1 (Unstaple78.Rd:11): Warning: missing </ul> before </div>
Unstaple96.html:47:1 (Unstaple96.Rd:11): Warning: missing </ul> before </div>
WriteCat.html:68:1 (WriteCat.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Found the following HTML validation problems:
addMargin.html:72:1 (addMargin.Rd:28): Warning: missing </ul> before </div>
Maintainer: ‘Jacob R. Bradley <cobrbradley@gmail.com>’

The Description field contains
  and Cannings (2021) <arXiv:2102.04296>. This package allows the user to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                     ^
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                                  ^
Maintainer: ‘Daniel Nevo <danielnevo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Nevo",
                    role = c("aut", "cre"),
                    email = "danielnevo@gmail.com")
as necessary.

The Description field contains
  proportional hazard model, Nevo et al. (2018+) <arXiv:1801.01529>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Steven Andrew Culpepper <sculpepp@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/iccbeta.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Josep L. Carrasco <jlcarrasco@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Josep", "L."),
                    family = "Carrasco",
                    role = c("aut", "cre"),
                    email = "jlcarrasco@ub.edu")
as necessary.
Maintainer: ‘Weichi Yao <wy635@stern.nyu.edu>’

The Description field contains
  <arXiv:1901.04599>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Matthew Wolak <matthewwolak@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alasdair Rathbone <alasdair.rathbone@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alasdair",
                      family = "Rathbone",
                      role = c("aut", "cre"),
                      email = "alasdair.rathbone@gmail.com"),
               person(given = "Saurabh",
                      family = "Shaw",
                      role = "aut"),
               person(given = "Dinesh",
                      family = "Kumbhare",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘icd_lookup.R’
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lorenz",
                      family = "Brachtendorf",
                      role = "aut",
                      email = "Lorenz.Brachtendorf@gmx.de"),
               person(given = "Stephan",
                      family = "Dlugosz",
                      role = c("aut", "cre"),
                      email = "stephan.dlugosz@googlemail.com"))
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Goldstein",
                      role = "aut"),
               person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Justin",
                      family = "Bleich",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.dice.html:57:1 (print.dice.Rd:19): Warning: missing </ul> before </div>
print.ice.html:57:1 (print.ice.Rd:19): Warning: missing </ul> before </div>
summary.dice.html:57:1 (summary.dice.Rd:19): Warning: missing </ul> before </div>
summary.ice.html:57:1 (summary.ice.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Sam Parsons <sam.parsons@radboudumc.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/sdparsons/ICED
which should likely be
  https://github.com/sdparsons/ICED/issues
instead.
Maintainer: ‘Bob Obenchain <wizbob@att.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bob",
                    family = "Obenchain",
                    role = c("aut", "cre"),
                    email = "wizbob@att.net")
as necessary.
checkRd: (-1) ICEscale.Rd:53: Escaped LaTeX specials: \^
checkRd: (-1) dpwdg.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) dpwdg.Rd:15: Escaped LaTeX specials: \$
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  run.umap.Rd: umap_transform
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
iba.html:88:1 (iba.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘Clifford Anderson-Bergman <pistacliffcho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Clifford",
                    family = "Anderson-Bergman",
                    role = c("aut", "cre"),
                    email = "pistacliffcho@gmail.com")
as necessary.
Found the following HTML validation problems:
simIC_cluster.html:51:1 (simIC_cluster.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Xiangdong Gu <ustcgxd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangdong",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "ustcgxd@gmail.com"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
bayesmc.html:82:1 (bayesmc.Rd:28): Warning: missing </ul> before </div>
fitsurv.html:54:1 (fitsurv.Rd:14): Warning: missing </ul> before </div>
plot_surv.html:47:1 (plot_surv.Rd:10): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app.R’
checkRd: (-1) Bpa.Rd:39-40: Lost braces
    39 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) Fpa.Rd:42-43: Lost braces
    42 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) icesRound.Rd:64-65: Lost braces
    64 | \doi{10.17895/ices.pub.3038}{\emph{ICES Advice Technical
       |                             ^
checkRd: (-1) mohn.Rd:71-72: Lost braces
    71 | \doi{10.17895/ices.pub.5997}{\emph{ICES Scientific Reports
       |                             ^
Found the following HTML validation problems:
select_aoi_global_grid.html:140:1 (select_aoi_global_grid.Rd:176): Warning: <h5> anchor "Usage" already defined
select_aoi_global_grid.html:146:1 (select_aoi_global_grid.Rd:180): Warning: <h5> anchor "Arguments" already defined
select_aoi_global_grid.html:169:1 (select_aoi_global_grid.Rd:193): Warning: <h5> anchor "Usage" already defined
select_aoi_global_grid.html:175:1 (select_aoi_global_grid.Rd:197): Warning: <h5> anchor "Arguments" already defined
select_aoi_global_grid.html:200:1 (select_aoi_global_grid.Rd:212): Warning: <h5> anchor "Usage" already defined
select_aoi_global_grid.html:206:1 (select_aoi_global_grid.Rd:216): Warning: <h5> anchor "Arguments" already defined
select_aoi_global_grid.html:236:1 (select_aoi_global_grid.Rd:232): Warning: <h5> anchor "Usage" already defined
select_aoi_global_grid.html:242:1 (select_aoi_global_grid.Rd:236): Warning: <h5> anchor "Returns" already defined
select_aoi_global_grid.html:259:1 (select_aoi_global_grid.Rd:245): Warning: <h5> anchor "Usage" already defined
select_aoi_global_grid.html:265:1 (select_aoi_global_grid.Rd:249): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
read.artifacts.html:50:1 (read.artifacts.Rd:12): Warning: missing </ul> before </div>
write.artifacts.html:55:1 (write.artifacts.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ICGOR-package.Rd’:
    \keyword{ package, generalized odds rate hazards m [TRUNCATED]
Found the following HTML validation problems:
plot.predict.GORH.html:57:1 (plot.predict.GORH.Rd:18): Warning: missing </ul> before </div>
summary.GORH.html:57:1 (summary.GORH.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Ulrike Groemping <ulrike.groemping@bht-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ulrike",
                    family = "Groemping",
                    role = c("aut", "cre"),
                    email = "ulrike.groemping@bht-berlin.de")
as necessary.
Found the following HTML validation problems:
baseline_intensities_from_coxmod.html:54:1 (baseline_intensities_from_coxmod.Rd:15): Warning: missing </ul> before </div>
existenceNPMLE.html:75:1 (existenceNPMLE.Rd:25): Warning: missing </ul> before </div>
expand_covariates_long_data.html:70:1 (expand_covariates_long_data.Rd:25): Warning: missing </ul> before </div>
prod_lambda_G_base.html:61:1 (prod_lambda_G_base.Rd:17): Warning: missing </ul> before </div>
trans_specific_risks.html:81:1 (trans_specific_risks.Rd:30): Warning: missing </ul> before </div>
Maintainer: ‘Diaa Al Mohamad <diaa.almohamad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Diaa", "Al"),
                      family = "Mohamad",
                      role = c("aut", "cre"),
                      email = "diaa.almohamad@gmail.com"),
               person(given = c("Erik", "W."),
                      family = "van Zwet",
                      role = "aut"),
               person(given = c("Jelle", "J."),
                      family = "Goeman",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) ic.ranks.Rd:46: Lost braces; missing escapes or markup?
    46 | \item{n_adjust}{an integer-valued entry for advanced control over the lower- or upper-bound algorithms. When the "adjustL" parameter is TRUE, the new value of n_adjust is chosen automatically as the best adjustment on the lower affine bound of the chi-square quantiles according to the data. If adjustU is TRUE, then n_adjust contains the point at which the upper affine bound is tangent on the chi-square quantiles. Possible values {1,...,n-1}. If both adjustL and adjustU variables are left FALSE, then the default choice is that the lower affine bound passes between the chi-square quantiles at 1 and n-1 degrees of freedom, and the upper affine bound is tangent on n-1.}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
Maintainer: ‘Hui Xu <huix@schoolph.umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "huix@schoolph.umass.edu"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) data.Rd:7: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:9: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Lianming Wang <wangl@stat.sc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christopher", "S."),
                      family = "McMahan",
                      role = "aut"),
               person(given = "Lianming",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wangl@stat.sc.edu"))
as necessary.
Maintainer: ‘Olga Savchuk <olga.y.savchuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olga",
                    family = "Savchuk",
                    role = c("aut", "cre"),
                    email = "olga.y.savchuk@gmail.com")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
filter_log_ns_style.html:46:1 (filter_log_ns_style.Rd:10): Warning: missing </ul> before </div>
filter_log_style.html:46:1 (filter_log_style.Rd:10): Warning: missing </ul> before </div>
nullor.html:50:1 (nullor.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Tomas Sieger <tomas.sieger@seznam.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Sieger",
                    role = c("aut", "cre"),
                    email = "tomas.sieger@seznam.cz")
as necessary.
'library' or 'require' calls not declared from:
  ‘MASS’ ‘flowStats’ ‘hyperSpec’
Maintainer: ‘Hideitsu Hino <hideitsu.hino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideitsu",
                    family = "Hino",
                    role = c("aut", "cre"),
                    email = "hideitsu.hino@gmail.com")
as necessary.
Maintainer: ‘Andreas Anastasiou <a.anastasiou@lse.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Caleb A. Class <cclass@butler.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Caleb", "A."),
                      family = "Class",
                      role = c("aut", "cre"),
                      email = "cclass@butler.edu"),
               person(given = c("Min", "Jin"),
                      family = "Ha",
                      role = "aut",
                      email = "mjha@mdanderson.org"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calibrate_LLR.R’ ‘concordance.R’ ‘contentmask.R’ ‘create_corpus.R’
    ‘delta.R’ ‘density_plot.R’ ‘impostors.R’ ‘lambdaG.R’ ‘lambdaG.Rd’
    ‘lambdaG_visualize.R’ ‘lambdaG_visualize.Rd’ ‘most_similar.Rd’
    ‘ngram_tracing.R’ ‘performance.R’ ‘posterior.R’ ‘tokenize_sents.R’
    ‘utils.R’ ‘vectorize.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘idmc_transform_daily.R’
Maintainer: ‘Pavel Linhart <pavel.linhart@centrum.cz>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Angelos Markos <amarkos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alfonso", "Iodice", "D'"),
                      family = "Enza",
                      role = "aut"),
               person(given = "Angelos",
                      family = "Markos",
                      role = c("aut", "cre"),
                      email = "amarkos@gmail.com"),
               person(given = "Davide",
                      family = "Buttarazzi",
                      role = "ctb"))
as necessary.
Maintainer: ‘Ang Dong <fantasys05227@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ang",
                    family = "Dong",
                    role = c("aut", "cre"),
                    email = "fantasys05227@gmail.com")
as necessary.
Found the following HTML validation problems:
biqdODE_plot_all.html:78:1 (biqdODE_plot_all.Rd:30): Warning: missing </ul> before </div>
biqdODE_plot_base.html:68:1 (biqdODE_plot_base.Rd:24): Warning: missing </ul> before </div>
qdODE_plot_base.html:54:1 (qdODE_plot_base.Rd:14): Warning: missing </ul> before </div>
qdODEplot_convert.html:46:1 (qdODEplot_convert.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Qunhua Li <qunhua.li@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qunhua",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "qunhua.li@psu.edu")
as necessary.
Found the following HTML validation problems:
UFA_enumerated_chemical_space.html:50:1 (UFA_enumerated_chemical_space.Rd:15): Warning: missing </ul> before </div>
UFA_enumerated_chemical_space_xlsxAnalyzer.html:50:1 (UFA_enumerated_chemical_space_xlsxAnalyzer.Rd:15): Warning: missing </ul> before </div>
UFA_score_coefficients_corrector.html:69:1 (UFA_score_coefficients_corrector.Rd:25): Warning: missing </ul> before </div>
UFA_score_function_optimization.html:50:1 (UFA_score_function_optimization.Rd:15): Warning: missing </ul> before </div>
aligned_molecular_formula_annotator.html:50:1 (aligned_molecular_formula_annotator.Rd:15): Warning: missing </ul> before </div>
identificationScoreCalculator.html:87:1 (identificationScoreCalculator.Rd:34): Warning: missing </ul> before </div>
molecular_formula_library_search.html:69:1 (molecular_formula_library_search.Rd:25): Warning: missing </ul> before </div>
scoreCoefficientsEvaluation.html:50:1 (scoreCoefficientsEvaluation.Rd:15): Warning: missing </ul> before </div>
scoreCoefficientsOptimization.html:50:1 (scoreCoefficientsOptimization.Rd:15): Warning: missing </ul> before </div>
scoreCoefficientsReplicate.html:50:1 (scoreCoefficientsReplicate.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Rich FitzJohn <rich.fitzjohn@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: gfycat.com
    From: man/adjective_animal.Rd
Maintainer: ‘Erik Doffagne <erik.doffagne@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erik",
                    family = "Doffagne",
                    role = c("aut", "cre"),
                    email = "erik.doffagne@gmail.com")
as necessary.
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Luis F. Duque <lfduquey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luis", "F."),
                    family = "Duque",
                    role = c("aut", "cre"),
                    email = "lfduquey@gmail.com")
as necessary.
Found the following HTML validation problems:
check_reset.html:48:1 (check_reset.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Joshua N. Pritikin <jpritikin@pobox.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
SitemPlot.html:58:1 (SitemPlot.Rd:16): Warning: missing </ul> before </div>
addExploratoryFactors.html:58:1 (addExploratoryFactors.Rd:16): Warning: missing </ul> before </div>
iccPlot.html:70:1 (iccPlot.Rd:22): Warning: missing </ul> before </div>
plotInformation.html:63:1 (plotInformation.Rd:18): Warning: missing </ul> before </div>
replicateModelBy.html:88:1 (replicateModelBy.Rd:36): Warning: missing </ul> before </div>
Maintainer: ‘Leeyoung Park <lypark@yonsei.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Park",
                      family = "L",
                      role = "aut"),
               person(given = "Leeyoung",
                      family = "Park",
                      role = "cre",
                      email = "lypark@yonsei.ac.kr"))
as necessary.
Maintainer: ‘Stefano M. Iacus <siacus@iq.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S.", "M."),
                      family = "Iacus",
                      role = "aut"),
               person(given = c("Stefano", "M."),
                      family = "Iacus",
                      role = "cre",
                      email = "siacus@iq.harvard.edu"))
as necessary.
Maintainer: ‘Matthew Jackson <mattjackson4@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kai Wang <kai-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Kai"),
                      family = "Wang",
                      role = "aut"),
               person(given = "Kai",
                      family = "Wang",
                      role = "cre",
                      email = "kai-wang@uiowa.edu"))
as necessary.
Found the following HTML validation problems:
av_income_simple.html:53:1 (av_income_simple.Rd:14): Warning: missing </ul> before </div>
density_development.html:83:1 (density_development.Rd:29): Warning: missing </ul> before </div>
productivity.html:78:1 (productivity.Rd:26): Warning: missing </ul> before </div>
Found the following HTML validation problems:
dot-onUnload.html:47:1 (dot-onUnload.Rd:10): Warning: missing </ul> before </div>
Found the following assignments to the global environment:
File ‘IgorR/R/ReadIgorBinary.R’:
  assign(WaveName, rval, envir = .GlobalEnv)
Maintainer: ‘Jean-Luc Lipatz <jllipatz@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Luc",
                      family = "Lipatz",
                      role = c("aut", "cre"),
                      email = "jllipatz@protonmail.com"),
               person(given = "Bernard",
                      family = "Gestin",
                      role = "ctb"))
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: LICENSE
    From: inst/README.md
Found the following HTML validation problems:
matrix_list.html:162:1 (matrix_list.Rd:109): Warning: missing </ul> before </div>
Maintainer: ‘Sean J Westwood <seanjw@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sean", "J"),
                    family = "Westwood",
                    role = c("aut", "cre"),
                    email = "seanjw@stanford.edu")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Wentao Lu <wlu1026@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wentao",
                      family = "Lu",
                      role = c("aut", "cre"),
                      email = "wlu1026@yahoo.com"),
               person(given = "Xinlei",
                      family = "Wang",
                      role = "aut"),
               person(given = "Xiaowei",
                      family = "Zhan",
                      role = "aut"))
as necessary.
Maintainer: ‘Nitesh Kumar Sharma <sharmanitesh.iasri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nitesh", "Kumar"),
                      family = "Sharma",
                      role = c("aut", "cre"),
                      email = "sharmanitesh.iasri@gmail.com"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"),
               person(given = "Neeraj",
                      family = "Budhlakoti",
                      role = "aut"),
               person(given = c("Md.", "Samir"),
                      family = "Farooqi",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
access_component.html:70:1 (access_component.Rd:40): Warning: missing </ul> before </div>
add_component.html:76:1 (add_component.Rd:43): Warning: missing </ul> before </div>
iheatmap_list_utils.html:96:1 (iheatmap_list_utils.Rd:60): Warning: missing </ul> before </div>
iheatmapr-shiny.html:67:1 (iheatmapr-shiny.Rd:25): Warning: missing </ul> before </div>
knit_print.Iheatmap.html:51:1 (knit_print.Iheatmap.Rd:12): Warning: missing </ul> before </div>
make_component.html:62:1 (make_component.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Kostas Vasilopoulos <k.vasilopoulo@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) simHawkes1a.Rd:35: Lost braces; missing escapes or markup?
    35 | distribution; 'd${dis}' gives the density function \eqn{g(\cdot)}.}
       |                  ^
Maintainer: ‘Tim Liao <tfliao@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Liao",
                    role = c("aut", "cre"),
                    email = "tfliao@illinois.edu")
as necessary.
checkRd: (-1) lab.qcs.Rd:24: Lost braces
    24 | It develops an object of \code{lab.qcs}-code{link{class}} to perform statistical quality control.
       |                                             ^
checkRd: (-1) lab.qcs.Rd:24: Lost braces
    24 | It develops an object of \code{lab.qcs}-code{link{class}} to perform statistical quality control.
       |                                                  ^
Found the following HTML validation problems:
boot.sim.set.html:50:1 (boot.sim.set.Rd:12): Warning: missing </ul> before </div>
func.ils.formula.html:60:1 (func.ils.formula.Rd:18): Warning: missing </ul> before </div>
outliers.ils.html:54:1 (outliers.ils.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘"Christopher, E. Maerzluft" <cmaerzlu@rand.org>’

The Description field contains
  <arXiv:1804.02090>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) define_target_function.Rd:41: Lost braces; missing escapes or markup?
    41 | be done either as a single vector of values (e.g. `function(x) { ... }`), or individual inputs for each parameter
       |                                                                ^
checkRd: (-1) define_target_function.Rd:42: Lost braces; missing escapes or markup?
    42 | (e.g. `function(x1, x2) { ... }`). If a single vector is used, all parameters will be passed to the target function as
       |                         ^
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) image_contour_detector.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_contour_detector.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_contour_detector.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

The Description field contains
  <arXiv:0810.2434>.  The package allows to detect corners in digital
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alex J.C. Witsil <alexjcwitsil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J.C."),
                    family = "Witsil",
                    role = c("aut", "cre"),
                    email = "alexjcwitsil@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘image.LineSegmentDetector-package.Rd’:
    https://doi.org/10.5201/ipol.2012.gjmr-lsd
  File ‘image_line_segment_detector.Rd’:
    https://doi.org/10.5201/ipol.2012.gjmr-lsd
checkRd: (-1) image_line_segment_detector.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_line_segment_detector.Rd:66-72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_line_segment_detector.Rd:73-76: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘image_otsu.Rd’:
    https://doi.org/10.5201/ipol.2016.158
Specified C++11: please drop specification unless essential
Maintainer: ‘Shota Ochi <shotaochi1990@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BalanceSimplest.Rd’:
    https://doi.org/10.5201/ipol.2011.llmps-scb
  File ‘DenoiseDCT.Rd’:
    https://doi.org/10.5201/ipol.2011.ys-dct
  File ‘EqualizePiecewise.Rd’:
    https://doi.org/10.5201/ipol.2012.lps-pae
  File ‘SPE.Rd’:
    https://doi.org/10.5201/ipol.2014.84
Found the following HTML validation problems:
diffusion_tensors.html:73:1 (diffusion_tensors.Rd:27): Warning: missing </ul> before </div>
displacement.html:78:1 (displacement.Rd:30): Warning: missing </ul> before </div>
get_hessian.html:50:1 (get_hessian.Rd:12): Warning: missing </ul> before </div>
play.html:58:1 (play.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Juergen Niedballa <niedballa@izw-berlin.de>’

The Description field contains
  <arXiv:1505.04597> and the U-Net++ architecture by Zhou et al. (2018)
  <arXiv:1807.10165>. We provide pre-trained models for assessing canopy
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) imagesToKerasInput.Rd:23: Lost braces
    23 | \item{grayscale}{logical. Defines color channels of images: 1 if code{TRUE}, 3 if \code{FALSE}.}
       |                                                                      ^
Found the following HTML validation problems:
imageviewer-shiny.html:68:1 (imageviewer-shiny.Rd:25): Warning: missing </ul> before </div>
Found the following significant warnings:
  agenbag-gradients.cpp:100:57: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::Mat<double>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  convolution-with-quantiles.cpp:85:57: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::Mat<double>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  quantile-filter.cpp:67:57: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::Mat<double>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/imagine.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Ignacio Cordón <nacho.cordon.castillo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/imbalance.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) oversample.Rd:23-24: Lost braces
    23 | minority examples and majority ones, that is, the quotient {size of
       |                                                            ^
checkRd: (-1) oversample.Rd:24: Lost braces; missing escapes or markup?
    24 | minority class}/{size of majority class}. There are methods, such as
       |                 ^
Found the following HTML validation problems:
imbibe.html:63:1 (imbibe.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘Yuan Li <851277048@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daxuan", "Deng", "Yuan"),
                      family = "Li",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Li",
                      role = "cre",
                      email = "851277048@qq.com"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: omdbAPI documentation
    From: man/find_by_title.Rd
  URI: omdbAPI documentation
    From: man/search_by_title.Rd
Found the following HTML validation problems:
calculate_pop_weighted_score.html:63:1 (calculate_pop_weighted_score.Rd:21): Warning: missing </ul> before </div>
calculate_proportion.html:64:1 (calculate_proportion.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Kai Wang <kai-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Kai"),
                      family = "Wang",
                      role = "aut"),
               person(given = "Kai",
                      family = "Wang",
                      role = "cre",
                      email = "kai-wang@uiowa.edu"))
as necessary.
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘ImHD’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ImHD.Rcheck/00install.out’ for details.
Maintainer: ‘Keefe Murphy <keefe.murphy@mu.ie>’

The BugReports field in DESCRIPTION has
  https://github.com/Keefe-Murphy/IMIFA
which should likely be
  https://github.com/Keefe-Murphy/IMIFA/issues
instead.
Maintainer: ‘Ignacio Martinez <ignacio@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ignacio",
                    family = "Martinez",
                    role = c("aut", "cre"),
                    email = "ignacio@protonmail.com")
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Jan",
                      family = "Steinfeld",
                      role = "aut"))
as necessary.
Maintainer: ‘Ruzhang Zhao<ruzhangzhao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ruzhang",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "ruzhangzhao@gmail.com"),
               person(given = "Pengyu",
                      family = "Hong",
                      role = "aut"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
im_common_args.html:56:1 (im_common_args.Rd:18): Warning: missing </ul> before </div>
repFilter.html:120:1 (repFilter.Rd:59): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ImmunData.html:128:1 (ImmunData.Rd:77): Warning: <h5> anchor "Usage" already defined
ImmunData.html:134:1 (ImmunData.Rd:81): Warning: <h5> anchor "Arguments" already defined
count.ImmunData.html:63:1 (count.ImmunData.Rd:18): Warning: missing </ul> before </div>
imd_schema.html:72:1 (imd_schema.Rd:38): Warning: missing </ul> before </div>
checkRd: (-1) stringCSSRule.Rd:22: Lost braces
    22 | using the {{placeholder}} convention.
       |           ^
checkRd: (-1) stringTemplate.Rd:23: Lost braces
    23 | placeholders are marked using the {{placeholder}} convention.
       |                                   ^
checkRd: (-1) stringTemplate.Rd:12: Lost braces
    12 | {{placeholder}} format.}
       | ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  flexPage.Rd: htmlDependency, tagList, shinyUI
  flexPanel.Rd: HTML, htmlDependency, tagList
  gridPage.Rd: htmlDependency, tagList, shinyUI
  gridPanel.Rd: HTML, htmlDependency, tagList
  stringCSSRule.Rd: htmlTemplate
  stringTemplate.Rd: htmlTemplate
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Quentin", "Giai"),
                    family = "Gianetto",
                    role = c("aut", "cre"),
                    email = "quentin2g@yahoo.fr")
as necessary.
Maintainer: ‘Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nery", "Sofia"),
                    family = "Huerta-Pacheco",
                    role = c("aut", "cre"),
                    email = "nehuerta@uv.mx")
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:104:1 (inst/NEWS.Rd:43): Warning: missing </ul> before </div>
NEWS.html:56:1 (inst/NEWS.Rd:21): Warning: <h4> anchor "New-features" already defined
Maintainer: ‘Jonas Christoffer Lindstrøm <jonaslindstrom88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonas", "Christoffer"),
                    family = "Lindstrøm",
                    role = c("aut", "cre"),
                    email = "jonaslindstrom88@gmail.com")
as necessary.
Maintainer: ‘Andrea Cantieni <andrea.cantieni@phsz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Cantieni",
                    role = c("aut", "cre"),
                    email = "andrea.cantieni@phsz.ch")
as necessary.
Maintainer: ‘Federico Casale <casale@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Federico",
                    family = "Casale",
                    role = c("aut", "cre"),
                    email = "casale@hhu.de")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) imptree_params.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imptree_params.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imptree_params.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.imptree.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
impute_iterative.html:166:1 (impute_iterative.Rd:98): Warning: <h3> anchor "stop_fun" already defined
Found the following HTML validation problems:
merge_imputed.html:55:1 (merge_imputed.Rd:14): Warning: missing </ul> before </div>
summary-imputeMulti-method.html:51:1 (summary-imputeMulti-method.Rd:12): Warning: missing </ul> before </div>
summary-mod_imputeMulti-method.html:51:1 (summary-mod_imputeMulti-method.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Steffen Moritz <steffen.moritz10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
na.interpolation.html:78:1 (na.interpolation.Rd:27): Warning: missing </ul> before </div>
na.kalman.html:103:1 (na.kalman.Rd:54): Warning: missing </ul> before </div>
na.locf.html:70:1 (na.locf.Rd:23): Warning: missing </ul> before </div>
na.ma.html:81:1 (na.ma.Rd:30): Warning: missing </ul> before </div>
na.mean.html:79:1 (na.mean.Rd:26): Warning: missing </ul> before </div>
na.random.html:67:1 (na.random.Rd:23): Warning: missing </ul> before </div>
na.remove.html:49:1 (na.remove.Rd:11): Warning: missing </ul> before </div>
na.replace.html:61:1 (na.replace.Rd:19): Warning: missing </ul> before </div>
na.seadec.html:101:1 (na.seadec.Rd:42): Warning: missing </ul> before </div>
na.seasplit.html:101:1 (na.seasplit.Rd:42): Warning: missing </ul> before </div>
Found the following HTML validation problems:
uStat11.diff.html:58:1 (uStat11.diff.Rd:18): Warning: missing </ul> before </div>
uStat11.identity.html:58:1 (uStat11.identity.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Ajit Johnson Nirmal <ajitjohnson.n@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ajit", "Johnson"),
                    family = "Nirmal",
                    role = c("aut", "cre"),
                    email = "ajitjohnson.n@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘blm.R’ ‘checkBaseline.R’ ‘cleaning.R’ ‘countMissing.R’
    ‘getStanParameter.R’ ‘logit.R’ ‘negativeBionomial.R’
Found the following HTML validation problems:
animate_imu-shiny.html:68:1 (animate_imu-shiny.Rd:25): Warning: missing </ul> before </div>
animate_imu.html:59:1 (animate_imu.Rd:17): Warning: missing </ul> before </div>
imu_object-shiny.html:68:1 (imu_object-shiny.Rd:25): Warning: missing </ul> before </div>
imu_object-update.html:60:1 (imu_object-update.Rd:20): Warning: missing </ul> before </div>
imu_object.html:55:1 (imu_object.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Martin A. Stoffel <martin.adam.stoffel@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
orca.halfdelta.html:54:1 (orca.halfdelta.Rd:14): Warning: missing </ul> before </div>
checkRd: (-1) make_likelihood_matrix.Rd:16: Lost braces; missing escapes or markup?
    16 | This function creates a matrix such that P[t, s] = P(C = t | I = s) = theta_{t-s} for s <= t and 0 otherwise.
       |                                                                             ^
Found the following HTML validation problems:
data_check.html:65:1 (data_check.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
minObjFunPORT.html:62:1 (minObjFunPORT.Rd:18): Warning: missing </ul> before </div>
Running ‘testthat.R’ [16s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(inDAGO)
  The following packages are not installed: Rfastp.
  To enable all the features of inDAGO, install with:
    if (!requireNamespace('BiocManager', quietly=TRUE))
      install.packages('BiocManager')
    BiocManager::install(c("Rfastp"))
  
  > 
  > test_check("inDAGO")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-inDAGO_shiny.R:4:3'): Shiny app is generated ───────────────────
  Error in `inDAGO()`: The following packages are not installed: Rfastp.
  To enable all the features of inDAGO install with:
    if (!requireNamespace('BiocManager', quietly=TRUE))
      install.packages('BiocManager')
    BiocManager::install(c("Rfastp"))
  
  Backtrace:
      ▆
   1. ├─testthat::expect_s3_class(inDAGO(), "shiny.appobj") at test-inDAGO_shiny.R:4:3
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─inDAGO::inDAGO()
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Utkarsh J. Dang <utkarshdang@cunet.carleton.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Utkarsh", "J."),
                      family = "Dang",
                      role = c("aut", "cre"),
                      email = "utkarshdang@cunet.carleton.ca"),
               person(given = c("G.", "Brian"),
                      family = "Golding",
                      role = "aut"))
as necessary.
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

The Description field contains
  proposed in Huling, Greifer, and Chen (2021) <arxiv:2107.07086>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel Grose <dan.grose@lancaster.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "B."),
                      family = "Berrett",
                      role = "aut",
                      email = "t.berrett@statslab.cam.ac.uk"),
               person(given = c("Daniel", "J."),
                      family = "Grose",
                      role = c("cre", "ctb"),
                      email = "dan.grose@lancaster.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut",
                      email = "r.samworth@statslab.cam.ac.uk"))
as necessary.
Maintainer: ‘Simon Trimborn <trimborn.econometrics@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Trimborn",
                    role = c("aut", "cre"),
                    email = "trimborn.econometrics@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘IndexComp.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexMemberSelection.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexMembersUpdate.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘IndexUpdate.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘RelativeWeights.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
  File ‘SwitchDates.Rd’:
    https://doi.org/10.1016/j.jempfin.2018.08.004
checkRd: (-1) IndexComp.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Alejandro Saavedra-Nieves <alejandro.saavedra.nieves@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Saavedra-Nieves",
                      role = c("aut", "cre"),
                      email = "alejandro.saavedra.nieves@gmail.com"),
               person(given = "Paula",
                      family = "Saavedra-Nieves",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
apply_to_columns.html:55:1 (apply_to_columns.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Graham White <g.white@unswalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Graham",
                    family = "White",
                    role = c("aut", "cre"),
                    email = "g.white@unswalumni.com")
as necessary.
Found the following HTML validation problems:
imputeQuantities.html:65:1 (imputeQuantities.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Geoff Hosack <geoff.hosack@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Geoffrey", "R."),
                      family = "Hosack",
                      role = "aut"),
               person(given = "Geoff",
                      family = "Hosack",
                      role = "cre",
                      email = "geoff.hosack@csiro.au"))
as necessary.
Maintainer: ‘Ana C. Cebrian <acebrian@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ana", "C."),
                    family = "Cebrian",
                    role = c("aut", "cre"),
                    email = "acebrian@unizar.es")
as necessary.
checkRd: (-1) process_stats.Rd:11: Lost braces; missing escapes or markup?
    11 | the {janitor} package}
       |     ^
checkRd: (-1) theme_industRial.Rd:40: Lost braces; missing escapes or markup?
    40 | adapted from the package {cowplot} by Claus O.Wilke and reflects the principles
       |                          ^
checkRd: (-1) theme_industRial.Rd:45: Lost braces; missing escapes or markup?
    45 | It basically combines the half open theme with a grid background from {cowplot}
       |                                                                       ^
Maintainer: ‘Eduardo Flores <eduardo@enelmargen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eduardo",
                    family = "Flores",
                    role = c("aut", "cre"),
                    email = "eduardo@enelmargen.org")
as necessary.
Maintainer: ‘Ivan Skliarov <i.skliarov@student.uw.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Skliarov",
                    role = c("aut", "cre"),
                    email = "i.skliarov@student.uw.edu.pl")
as necessary.
Maintainer: ‘Jonas Haslbeck <jonashaslbeck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lourens",
                      family = "Waldorp",
                      role = "aut",
                      email = "waldorp@uva.nl"),
               person(given = "Jonas",
                      family = "Haslbeck",
                      role = c("aut", "cre"),
                      email = "jonashaslbeck@gmail.com"))
as necessary.
Found the following HTML validation problems:
get_lower_tri_noDiag.html:46:1 (get_lower_tri_noDiag.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.iNEXT.html:51:1 (print.iNEXT.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Denis Talbot <denis.talbot@fmed.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Talbot",
                      role = c("aut", "cre"),
                      email = "denis.talbot@fmed.ulaval.ca"),
               person(given = "Thierry",
                      family = "Duchesne",
                      role = "aut"),
               person(given = "Jacques",
                      family = "Brisson",
                      role = "aut"),
               person(given = "Nathalie",
                      family = "Vandal",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
print.interference.html:51:1 (print.interference.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
pipe.html:42:1 (pipe.Rd:7): Warning: missing </ul> before </div>
print.infer.html:59:1 (print.infer.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Evan Poworoznek <infinitefactorpackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Evan",
                    family = "Poworoznek",
                    role = c("aut", "cre"),
                    email = "infinitefactorpackage@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/infinitefactor.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Yufang Qin <yfqin@shou.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yufang",
                    family = "Qin",
                    role = c("aut", "cre"),
                    email = "yfqin@shou.edu.cn")
as necessary.
Found the following HTML validation problems:
vol.mat.html:58:1 (vol.mat.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
fetch_output_indeces.html:46:1 (fetch_output_indeces.Rd:10): Warning: missing </ul> before </div>
plot_sequentially.html:46:1 (plot_sequentially.Rd:10): Warning: missing </ul> before </div>
print_output.html:50:1 (print_output.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Rense Nieuwenhuis <rense.nieuwenhuis@sofi.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rense",
                      family = "Nieuwenhuis",
                      role = c("aut", "cre"),
                      email = "rense.nieuwenhuis@sofi.su.se"),
               person(given = "Ben",
                      family = "Pelzer",
                      role = "aut"),
               person(given = c("Manfred", "te"),
                      family = "Grotenhuis",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) school23.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) school23.Rd:35: Escaped LaTeX specials: \&
Maintainer: ‘Aditya Khanna <khanna7.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Jacobs",
                      role = "aut"),
               person(given = "Aditya",
                      family = "Khanna",
                      role = c("aut", "cre"),
                      email = "khanna7.work@gmail.com"),
               person(given = "Kamesh",
                      family = "Madduri",
                      role = "ctb"),
               person(given = "David",
                      family = "Bader",
                      role = "ctb"))
as necessary.
Maintainer: ‘Adrian Salavaty <abbas.salavaty@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abbas",
                      family = "Salavaty",
                      role = c("aut", "cre"),
                      comment = "Adrian"),
               person(given = "Mirana",
                      family = "Ramialison",
                      role = "ths"),
               person(given = c("Peter", "D."),
                      family = "Currie",
                      role = "ths"),
               person(given = "Adrian",
                      family = "Salavaty",
                      role = "cre",
                      email = "abbas.salavaty@gmail.com"))
as necessary.
Maintainer: ‘Dominik Leutnant <leutnant@fh-muenster.de>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Found the following HTML validation problems:
check_srv_comm.html:48:1 (check_srv_comm.Rd:11): Warning: missing </ul> before </div>
get_precision_divisor.html:48:1 (get_precision_divisor.Rd:11): Warning: missing </ul> before </div>
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Larsen Kim <kblarsen4@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Information.Rd’:
    \keyword{IV,}
    \keyword{NIV,}
    \keyword{NWOE,}
    \keyword{WOE,}
    \keyword{classification,}
    \keyword{weight-of-evidence,}
Found the following HTML validation problems:
Aggregate.html:62:1 (Aggregate.Rd:18): Warning: missing </ul> before </div>
CheckInputs.html:59:1 (CheckInputs.Rd:16): Warning: missing </ul> before </div>
MultiPlot.html:54:1 (MultiPlot.Rd:14): Warning: missing </ul> before </div>
NWOE.html:50:1 (NWOE.Rd:12): Warning: missing </ul> before </div>
SinglePlot.html:54:1 (SinglePlot.Rd:14): Warning: missing </ul> before </div>
WOE.html:50:1 (WOE.Rd:12): Warning: missing </ul> before </div>
is.binary.html:46:1 (is.binary.Rd:10): Warning: missing </ul> before </div>
penalty.html:54:1 (penalty.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Paul R Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R"),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Patrick E. Meyer <software@meyerp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Patrick", "E."),
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "software@meyerp.com")
as necessary.
Maintainer: ‘Murat Tinic <tinic@bilkent.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duygu",
                      family = "Celik",
                      role = "aut"),
               person(given = "Murat",
                      family = "Tinic",
                      role = c("aut", "cre"),
                      email = "tinic@bilkent.edu.tr"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘InfoTrad-package.Rd’:
    \keyword{Probability of Informed Trading (PIN), LK [TRUNCATED]
Maintainer: ‘Jake Anderson <ajakef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Anderson",
                    role = c("aut", "cre"),
                    email = "ajakef@gmail.com")
as necessary.
Found the following files/directories:
  ‘c.txt’ ‘rho.txt’ ‘sta.txt’ ‘topo.txt’
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:696:1 (inst/NEWS.Rd:272): Warning: missing </ul> before </div>
NEWS.html:51:1 (inst/NEWS.Rd:17): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:208:1 (inst/NEWS.Rd:75): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:293:1 (inst/NEWS.Rd:109): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:364:1 (inst/NEWS.Rd:134): Warning: <h4> anchor "USER-LEVEL-CHANGES" already defined
NEWS.html:384:1 (inst/NEWS.Rd:142): Warning: <h4> anchor "FIXED-BUGS" already defined
NEWS.html:395:1 (inst/NEWS.Rd:147): Warning: <h4> anchor "DEPENDENCY-CHANGES" already defined
NEWS.html:414:1 (inst/NEWS.Rd:155): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:455:1 (inst/NEWS.Rd:170): Warning: <h4> anchor "DEPENDENCY-CHANGES" already defined
NEWS.html:472:1 (inst/NEWS.Rd:177): Warning: <h4> anchor "USER-LEVEL-CHANGES" already defined
NEWS.html:492:1 (inst/NEWS.Rd:186): Warning: <h4> anchor "FIXED-BUGS" already defined
NEWS.html:511:1 (inst/NEWS.Rd:194): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:528:1 (inst/NEWS.Rd:201): Warning: <h4> anchor "USER-LEVEL-CHANGES" already defined
NEWS.html:557:1 (inst/NEWS.Rd:213): Warning: <h4> anchor "FIXED-BUGS" already defined
NEWS.html:575:1 (inst/NEWS.Rd:221): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:592:1 (inst/NEWS.Rd:228): Warning: <h4> anchor "FIXED-BUGS" already defined
NEWS.html:627:1 (inst/NEWS.Rd:243): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:645:1 (inst/NEWS.Rd:251): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:671:1 (inst/NEWS.Rd:263): Warning: <h4> anchor "NEW-FEATURES" already defined
NEWS.html:682:1 (inst/NEWS.Rd:268): Warning: <h4> anchor "DEPENDENCIES" already defined
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  universe (Biecek 2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Valentim Dias <dvdscripter@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "Valentim"),
                    family = "Dias",
                    role = c("aut", "cre"),
                    email = "dvdscripter@gmail.com")
as necessary.
Maintainer: ‘Lev Kuznetsov <levk@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lev",
                    family = "Kuznetsov",
                    role = c("aut", "cre"),
                    email = "levk@jimmy.harvard.edu")
as necessary.
Found the following HTML validation problems:
default.html:49:1 (default.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_injprev_polar.R’ ‘gg_injriskmatrix.R’ ‘helpers.R’ ‘injprev.R’
    ‘injsummary.R’ ‘prepare_data.R’ ‘utils.R’
Maintainer: ‘Virgilio Gómez-Rubio <virgilio.gomez@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Virgilio",
                      family = "Gómez-Rubio",
                      role = c("aut", "cre"),
                      email = "virgilio.gomez@uclm.es"),
               person(given = "Roger",
                      family = "Bivand",
                      role = "aut",
                      email = "Roger.Bivand@nhh.no"))
as necessary.
Found the following HTML validation problems:
bru_compute_linearisation.html:176:1 (bru_compute_linearisation.Rd:99): Warning: missing </ul> before </div>
bru_inla.stack.mjoin.html:76:1 (bru_inla.stack.mjoin.Rd:32): Warning: missing </ul> before </div>
bru_make_stack.html:82:1 (bru_make_stack.Rd:31): Warning: missing </ul> before </div>
bru_timings.html:54:1 (bru_timings.Rd:15): Warning: missing </ul> before </div>
parse_inclusion.html:59:1 (parse_inclusion.Rd:19): Warning: missing </ul> before </div>
Found the following HTML validation problems:
coef.INLAjoint.html:51:1 (coef.INLAjoint.Rd:12): Warning: missing </ul> before </div>
family.INLAjoint.html:51:1 (family.INLAjoint.Rd:12): Warning: missing </ul> before </div>
fitted.INLAjoint.html:52:1 (fitted.INLAjoint.Rd:12): Warning: missing </ul> before </div>
fixef.INLAjoint.html:51:1 (fixef.INLAjoint.Rd:12): Warning: missing </ul> before </div>
formula.INLAjoint.html:51:1 (formula.INLAjoint.Rd:12): Warning: missing </ul> before </div>
logLik.INLAjoint.html:51:1 (logLik.INLAjoint.Rd:12): Warning: missing </ul> before </div>
nobs.INLAjoint.html:51:1 (nobs.INLAjoint.Rd:12): Warning: missing </ul> before </div>
predict.INLAjoint.html:164:1 (predict.INLAjoint.Rd:91): Warning: missing </ul> before </div>
print.plot.INLAjoint.html:72:1 (print.plot.INLAjoint.Rd:23): Warning: missing </ul> before </div>
ranef.INLAjoint.html:51:1 (ranef.INLAjoint.Rd:12): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
Found the following HTML validation problems:
coef.html:51:1 (coef.Rd:12): Warning: missing </ul> before </div>
print.html:51:1 (print.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  Warning: namespace ‘fHMM’ is not available and has been replaced
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ino.Rcheck/00install.out’ for details.
Maintainer: ‘Rebaudo Francois <francois.rebaudo@ird.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rebaudo",
                    family = "Francois",
                    role = c("aut", "cre"),
                    email = "francois.rebaudo@ird.fr",
                    comment = "IRD, UMR EGCE, IRD, CNRS, Univ. ParisSaclay")
as necessary.
Maintainer: ‘Tengyao Wang <t.wang59@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tengyao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "t.wang59@lse.ac.uk"),
               person(given = "Bertille",
                      family = "Follain",
                      role = "aut"),
               person(given = "Richard",
                      family = "Samworth",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
random.UnitVector.html:46:1 (random.UnitVector.Rd:10): Warning: missing </ul> before </div>
sparse.svd.missing.html:58:1 (sparse.svd.missing.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Pedro Fonseca <pedro.teles.fonseca@phd.iseg.ulisboa.pt>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    INSPECTumours (development version)
Found the following HTML validation problems:
notify_error_and_reset_input.html:46:1 (notify_error_and_reset_input.Rd:10): Warning: missing </ul> before </div>
plot_proportions.html:50:1 (plot_proportions.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "maloneypatr",
                      role = c("aut", "cre")),
               person(given = "Irucka",
                      family = "Embry",
                      role = c("aut", "ctb", "cre"),
                      email = "iembry@ecoccs.com"))
as necessary.
checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup?
    44 | menu in the {utils} package, yesno in the {devtools} package.
       |             ^
checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup?
    44 | menu in the {utils} package, yesno in the {devtools} package.
       |                                           ^
checkRd: (-1) install.FFmpeg.Rd:25: Lost braces; missing escapes or markup?
    25 | This function is useful for saveVideo() in the {animation} package.
       |                                                ^
checkRd: (-1) install.SWFTools.Rd:27: Lost braces; missing escapes or markup?
    27 | This function is useful for saveSWF() in the {animation} package.
       |                                              ^
checkRd: (-1) os.shutdown.Rd:25: Lost braces; missing escapes or markup?
    25 | This function is a modified version of Yihui's shutdown function from the {fun} package.
       |                                                                           ^
Found the following HTML validation problems:
add_load_installr_on_startup_menu.html:46:1 (add_load_installr_on_startup_menu.Rd:10): Warning: missing </ul> before </div>
add_remove_installr_from_startup_menu.html:46:1 (add_remove_installr_from_startup_menu.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Pablo Barbera <pbarbera@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Barbera",
                      role = c("aut", "cre"),
                      email = "pbarbera@usc.edu"),
               person(given = "Tiago",
                      family = "Dantas",
                      role = "ctb"),
               person(given = "Jonne",
                      family = "Guyt",
                      role = "ctb"))
as necessary.
Maintainer: ‘Alicja Wolny--Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny--Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Michal",
                      family = "Trzesiok",
                      role = "aut"))
as necessary.
Malformed Title field: should not end in a period.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘autoplot.restricted.Rd’ ‘autoplot.riskfactor.Rd’ ‘rating_factors.Rd’
Found the following HTML validation problems:
update_formula_add.html:54:1 (update_formula_add.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Jun Park <jun.park@alumni.iu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giorgos",
                      family = "Bakoyannis",
                      role = "aut",
                      email = "gbakogia@iu.edu"),
               person(given = "Jun",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "jun.park@alumni.iu.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yuan Wu <yuan.wu@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiaxing",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "yuan.wu@duke.edu"),
               person(given = "Xiaofei",
                      family = "Wang",
                      role = "aut"),
               person(given = "Kouros",
                      family = "Owzar.",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rudradev",
                      family = "Sengupta",
                      role = c("aut", "cre"),
                      email = "rudradev.sengupta@uhasselt.be"),
               person(given = c("Nolen", "Joy"),
                      family = "Perualila",
                      role = "aut"))
as necessary.
Maintainer: ‘Kasia Kulma <katarzyna.kulma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasia",
                    family = "Kulma",
                    role = c("aut", "cre"),
                    email = "katarzyna.kulma@gmail.com")
as necessary.
Found the following HTML validation problems:
GeoreferencedGgplot2.netTools.html:64:1 (GeoreferencedGgplot2.netTools.Rd:25): Warning: missing </ul> before </div>
GeoreferencedPlot.netTools.html:59:1 (GeoreferencedPlot.netTools.Rd:20): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘David Baranger [aut, cre] (<https://orcid.org/0000-0002-6659-357X>, davidbaranger.com), Brandon Goldstein [ctb], Megan Finsaas [ctb], Thomas Olino [ctb], Colin Vize [ctb], Don Lynam [ctb]’
  Authors@R: ‘David Baranger [aut, cre] (ORCID: <https://orcid.org/0000-0002-6659-357X>, website: davidbaranger.com), Brandon Goldstein [ctb], Megan Finsaas [ctb], Thomas Olino [ctb], Colin Vize [ctb], Don Lynam [ctb]’
Maintainer: ‘Babatunde Alli <babatunde.alli@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babatunde",
                    family = "Alli",
                    role = c("aut", "cre"),
                    email = "babatunde.alli@mail.mcgill.ca")
as necessary.
Found the following HTML validation problems:
plot.sim_margins.html:52:1 (plot.sim_margins.Rd:12): Warning: missing </ul> before </div>
plot.sim_slopes.html:52:1 (plot.sim_slopes.Rd:12): Warning: missing </ul> before </div>
sim_margins_tidiers.html:59:1 (sim_margins_tidiers.Rd:17): Warning: missing </ul> before </div>
sim_slopes_tidiers.html:59:1 (sim_slopes_tidiers.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Justin Esarey <justin@justinesarey.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justin",
                      family = "Esarey",
                      role = c("aut", "cre"),
                      email = "justin@justinesarey.com"),
               person(given = c("Jane", "Lawrence"),
                      family = "Sumner",
                      role = "aut"))
as necessary.
Maintainer: ‘Fei Zhou <fei.zhou@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fei",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "fei.zhou@outlook.com"),
               person(given = "Jie",
                      family = "Ren",
                      role = "aut"),
               person(given = "Yuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xiaoxi",
                      family = "Li",
                      role = "aut"),
               person(given = "Cen",
                      family = "Wu",
                      role = "aut"),
               person(given = "Yu",
                      family = "Jiang",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
reformat.html:55:1 (reformat.Rd:15): Warning: missing </ul> before </div>
Maintainer: ‘Olivier LE GOFF <olivierlegoff1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Olivier", "LE"),
                    family = "GOFF",
                    role = c("aut", "cre"),
                    email = "olivierlegoff1@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
handle_violation.html:50:1 (handle_violation.Rd:12): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/interflex.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Bastian Becker <bastian.becker@bayer.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bastian",
                      family = "Becker",
                      role = c("aut", "cre"),
                      email = "bastian.becker@bayer.com"),
               person(given = "Katharina",
                      family = "Mueller",
                      role = "aut"),
               person(given = "Hermann",
                      family = "Kulmann",
                      role = "aut"))
as necessary.
Maintainer: ‘Bastian Becker <bastian.becker@bayer.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bastian",
                      family = "Becker",
                      role = c("aut", "cre"),
                      email = "bastian.becker@bayer.com"),
               person(given = "Katharina",
                      family = "Mueller",
                      role = "aut"),
               person(given = "Hermann",
                      family = "Kulmann",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
bilinear.html:120:1 (bilinear.Rd:69): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Michel Ballings <michel.ballings@GMail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
checkRd: (-1) remit.Rd:32: Lost braces
    32 | A data set to replicate the findings of Escrib\`{a}-Folch,
       |                                                 ^
checkRd: (-1) remit.Rd:38: Lost braces
    38 | Escrib\`{a}-Folch, A., Meseguer, C. and Wright, J. (2018), Remittances and Protest in Dictatorships. American Journal of Political Science, 62: 889-904. \doi{10.1111/ajps.12382}
       |         ^
Maintainer: ‘Zehang Richard Li <lizehang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zehang", "Richard"),
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizehang@gmail.com"),
               person(given = "Tyler",
                      family = "McCormick",
                      role = "aut"),
               person(given = "Sam",
                      family = "Clark",
                      role = "aut"),
               person(given = "Peter",
                      family = "Byass",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
print.interVA_summary.html:51:1 (print.interVA_summary.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
print.interVA5_summary.html:51:1 (print.interVA5_summary.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
checkRd: (-1) interval-internal.Rd:40: Lost braces
    40 | \item{dqfunc}{function, density of the results of the quantile function, e.g., function(x){dnorm(qnorm(x))} (used for 'general' scores, 
       |                                                                                           ^
Found the following HTML validation problems:
interval-internal.html:135:1 (interval-internal.Rd:47): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Kimihiro Noguchi <kimihiro.noguchi@wwu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
interval-methods-assign.html:64:1 (interval-methods-assign.Rd:26): Warning: missing </ul> before </div>
intvCheck.html:58:1 (intvCheck.Rd:17): Warning: missing </ul> before </div>
plot-intgrd-missing-method.html:72:1 (plot-intgrd-missing-method.Rd:26): Warning: missing </ul> before </div>
plot-intsp-missing-method.html:90:1 (plot-intsp-missing-method.Rd:38): Warning: missing </ul> before </div>
show-intgrd-method.html:47:1 (show-intgrd-method.Rd:10): Warning: missing </ul> before </div>
show-intsp-method.html:47:1 (show-intsp-method.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
checkRd: (-1) decompose_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Jorge Luis Ojeda Cabrera <jojeda@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jorge", "Luis", "Ojeda"),
                    family = "Cabrera",
                    role = c("aut", "cre"),
                    email = "jojeda@unizar.es")
as necessary.
Maintainer: ‘Kerstin Johnsson <kerstin.johnsson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kerstin",
                      family = "Johnsson",
                      role = c("aut", "cre"),
                      email = "kerstin.johnsson@hotmail.com"),
               person(given = "Lund",
                      family = "University",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
computeStat.html:54:1 (computeStat.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Adriaan M. Dokter <amd427@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adriaan", "M."),
                    family = "Dokter",
                    role = c("aut", "cre"),
                    email = "amd427@cornell.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) intRvals-package.Rd:60: Lost braces
    60 | B\'{e}dard, J. & Gauthier, G. 1986. Assessment of faecal output in geese. Journal of Applied Ecology, 23, 77-90.
       |    ^
checkRd: (-1) partition.Rd:64: Lost braces
    64 | Bates, D., M\"{a}chler, M., Bolker, B.M. & Walker, S.C. (2015). Fitting linear mixed-effects models using lme4. Journal of Statistical Software, 67, 1-48.
       |               ^
Found the following HTML validation problems:
print.anova.intRvals.html:47:1 (print.anova.intRvals.Rd:10): Warning: missing </ul> before </div>
print.intRvals.html:47:1 (print.intRvals.Rd:10): Warning: missing </ul> before </div>
print.summary.intRvals.html:47:1 (print.summary.intRvals.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
summary.cox_cure.html:55:1 (summary.cox_cure.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Daniel Caro <dcarov@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Caro",
                      role = c("aut", "cre"),
                      email = "dcarov@gmail.com"),
               person(given = "Przemyslaw",
                      family = "Biecek",
                      role = "aut",
                      email = "przemyslaw.biecek@gmail.com"))
as necessary.
Maintainer: ‘Boris Leroy <leroy.boris@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boris",
                      family = "Leroy",
                      role = c("cre", "aut"),
                      email = "leroy.boris@gmail.com"),
               person(given = "Andrew",
                      family = "Kramer",
                      role = "aut"),
               person(given = "Anne-Charlotte",
                      family = "Vaissière",
                      role = "ctb"),
               person(given = "Christophe",
                      family = "Diagne",
                      role = "ctb"))
as necessary.
Maintainer: ‘Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicolai",
                    family = "Meinshausen",
                    role = c("aut", "cre"),
                    email = "meinshausen@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Marcus Rosenblatt <marcus.rosenblatt@fdm.uni-freiburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcus",
                    family = "Rosenblatt",
                    role = c("aut", "cre"),
                    email = "marcus.rosenblatt@fdm.uni-freiburg.de")
as necessary.
Maintainer: ‘Fred Hasselman <fred.hasselman@ru.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon M. Greenwell <greenwell.brandon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brandon", "M."),
                    family = "Greenwell",
                    role = c("aut", "cre"),
                    email = "greenwell.brandon@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hakon K. Gjessing <hakon.gjessing@uib.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hakon", "K."),
                    family = "Gjessing",
                    role = c("aut", "cre"),
                    email = "hakon.gjessing@uib.no")
as necessary.
Found the following HTML validation problems:
dot-check_all_miss_cols.html:51:1 (dot-check_all_miss_cols.Rd:12): Warning: missing </ul> before </div>
dot-check_char_cols.html:50:1 (dot-check_char_cols.Rd:12): Warning: missing </ul> before </div>
dot-check_no_miss_cols.html:56:1 (dot-check_no_miss_cols.Rd:15): Warning: missing </ul> before </div>
dot-check_num_cols.html:50:1 (dot-check_num_cols.Rd:12): Warning: missing </ul> before </div>
dot-check_std_colnames_in_data.html:56:1 (dot-check_std_colnames_in_data.Rd:16): Warning: missing </ul> before </div>
Found the following HTML validation problems:
rename2_cvt.html:62:1 (rename2_cvt.Rd:24): Warning: missing </ul> before </div>
stat_model.html:53:1 (stat_model.Rd:15): Warning: missing </ul> before </div>
Found the following HTML validation problems:
as_tibble.html:68:1 (as_tibble.Rd:24): Warning: missing </ul> before </div>
filter.html:67:1 (filter.Rd:23): Warning: missing </ul> before </div>
Maintainer: ‘John Wade <jjpwade2@illinois.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘f.influence.Rd’:
    https://doi.org/10.1080/09535319200000013
checkRd: (-1) f.influence.Rd:25: Lost braces; missing escapes or markup?
    25 | where F is the field of influence, k is order of influence, l_{ij} is the ith row and jth column element of the Leontief Inverse and -s indicates the sth element has been removed.
       |                                                               ^
Running examples in ‘IOHanalyzer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Plot.Stats.Significance_Graph
> ### Title: Plot a network graph showing the statistically different
> ###   algorithms
> ### Aliases: Plot.Stats.Significance_Graph
> ###   Plot.Stats.Significance_Graph.DataSetList
> 
> ### ** Examples
> 
> Plot.Stats.Significance_Graph(subset(dsl, funcId == 2), 16)
Error in `igraph::graph_from_adjacency_matrix()`:
! Cannot create a graph object because the adjacency matrix contains
  NAs.
Backtrace:
    ▆
 1. ├─IOHanalyzer::Plot.Stats.Significance_Graph(...)
 2. └─IOHanalyzer:::Plot.Stats.Significance_Graph.DataSetList(...)
 3.   └─igraph::graph_from_adjacency_matrix(p_matrix <= alpha, mode = "directed", diag = F)
 4.     └─igraph:::ensure_no_na(adjmatrix, "adjacency matrix")
 5.       └─cli::cli_abort(...)
 6.         └─rlang::abort(...)
Execution halted
Found the following HTML validation problems:
fast_RT_samples.html:54:1 (fast_RT_samples.Rd:14): Warning: missing </ul> before </div>
plot_general_data.html:162:1 (plot_general_data.Rd:82): Warning: missing </ul> before </div>
Maintainer: ‘Jan Budczies <jan.budczies@med.uni-heidelberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jan",
                      family = "Budczies",
                      role = c("aut", "cre"),
                      email = "jan.budczies@med.uni-heidelberg.de"),
               person(given = "Eva",
                      family = "Romanovsky",
                      role = "aut"))
as necessary.
Maintainer: ‘Allen Goebl <goebl005@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Allen",
                      family = "Goebl",
                      role = c("aut", "cre"),
                      email = "goebl005@umn.edu"),
               person(given = "Jeff",
                      family = "Jones",
                      role = "aut",
                      email = "jone1087@umn.ed"),
               person(given = "Adam",
                      family = "Beatty",
                      role = "aut",
                      email = "abeatty@humrro.org"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) aiPux.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dls2007.Rd:19: Lost braces
    19 | impact. emph{Journal of Applied Psychology}, 92(5), 1380.
       |             ^
checkRd: (-1) paretoXX.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:22-23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:32-33: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David J. H. Shih <djh.shih@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J.", "H."),
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "djh.shih@gmail.com")
as necessary.
Maintainer: ‘Timothy L. McMurry <tmcmurry@virginia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "L."),
                      family = "McMurry",
                      role = c("aut", "cre"),
                      email = "tmcmurry@virginia.edu"),
               person(given = c("Dimitris", "N."),
                      family = "Politis",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
tempdir_data.html:54:1 (tempdir_data.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Taylor",
                      family = "Arnold",
                      role = "aut",
                      email = "taylor.arnold@acm.org"))
as necessary.
File ‘iotools/libs/iotools.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘NAMED’, ‘SETLENGTH’,
    ‘SET_NAMED’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
chunk.apply.html:160:1 (chunk.apply.Rd:101): Warning: <h3> anchor "_sec_note" already defined
Maintainer: ‘Alexander Rossell Hayes <alexander@rossellhayes.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ian E. Fellows <ian@fellstat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ian", "E."),
                    family = "Fellows",
                    role = c("aut", "cre"),
                    email = "ian@fellstat.com")
as necessary.
Maintainer: ‘Jie-Huei Wang <jhwang@mail.fcu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie-Huei",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "jhwang@mail.fcu.edu.tw"),
               person(given = "Yi-Hau",
                      family = "Chen",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_lhat_glm.Rd’ ‘ipd.R’ ‘logistic_get_stats.Rd’ ‘ols_get_stats.Rd’
    ‘postpi_analytic_ols.Rd’ ‘postpi_boot_logistic.Rd’
    ‘postpi_boot_ols.Rd’ ‘ppi_logistic.Rd’ ‘ppi_mean.Rd’ ‘ppi_ols.R’
    ‘ppi_ols.Rd’ ‘ppi_plusplus_logistic.Rd’
    ‘ppi_plusplus_logistic_est.Rd’ ‘ppi_plusplus_mean.Rd’
    ‘ppi_plusplus_mean_est.Rd’ ‘ppi_plusplus_ols.Rd’
    ‘ppi_plusplus_ols_est.Rd’ ‘ppi_plusplus_quantile.Rd’
    ‘ppi_plusplus_quantile_est.Rd’ ‘ppi_quantile.Rd’ ‘pspa_logistic.Rd’
    ‘pspa_mean.Rd’ ‘pspa_ols.Rd’ ‘pspa_poisson.Rd’ ‘pspa_quantile.Rd’
    ‘simdat.R’
Maintainer: ‘Jemma Stachelek <jemma.stachelek@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
rm_na_pointslayers.html:54:1 (rm_na_pointslayers.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne-Laure",
                      family = "Boulesteix",
                      role = c("aut", "cre"),
                      email = "boulesteix@ibe.med.uni-muenchen.de"),
               person(given = "Mathias",
                      family = "Fuchs",
                      role = "aut"),
               person(given = "Gerhard",
                      family = "Schulze",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander W Blocker <ablocker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alexander", "W"),
                    family = "Blocker",
                    role = c("aut", "cre"),
                    email = "ablocker@gmail.com")
as necessary.
Found the following HTML validation problems:
create_target_priority.html:69:1 (create_target_priority.Rd:27): Warning: missing </ul> before </div>
process_seed_table.html:59:1 (process_seed_table.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "simon.urbanek@r-project.org"),
               person(given = "Tobias",
                      family = "Wichtrey",
                      role = "aut",
                      email = "tobias@tarphos.de"))
as necessary.
checkRd: (-1) check_convergence.Rd:47: Lost braces
    47 | \code{conv_plot}: code{ipm} invisibly.
       |                       ^
checkRd: (-1) init_ipm.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:70-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) make_ipm.Rd:276: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:277-281: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:282-286: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:287-291: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:292-293: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Niklas Hohmann <Niklas.Hohmann@fau.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Niklas",
                    family = "Hohmann",
                    role = c("aut", "cre"),
                    email = "niklas.hohmann@fau.de")
as necessary.

The Description field contains
  (2019) <arXiv:1901.10754>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
Conversion-methods.html:49:1 (Conversion-methods.Rd:104): Warning: missing </ul> before </div>
IP-package.html:132:1 (IP-package.Rd:97): Warning: missing </ul> before </div>
Found the following HTML validation problems:
sigma.html:52:1 (sigma.Rd:13): Warning: missing </ul> before </div>
summary.ipriorMod.html:58:1 (summary.ipriorMod.Rd:17): Warning: missing </ul> before </div>
update.ipriorMod.html:65:1 (update.ipriorMod.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Jean-Benoit Rossel <jean-benoit.rossel@unisante.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Jean-Benoit"),
                      family = "Rossel",
                      role = "aut"),
               person(given = c("Prof.", "Valentin"),
                      family = "Rousson",
                      role = "aut"),
               person(given = c("Dr.", "Yves"),
                      family = "Eggli",
                      role = "aut"),
               person(given = "Jean-Benoit",
                      family = "Rossel",
                      role = "cre",
                      email = "jean-benoit.rossel@unisante.ch"))
as necessary.
Maintainer: ‘Rama Ranjan Panda<rrpanda.phd2018.cs@nitrr.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rama", "Ranjan"),
                      family = "Panda",
                      role = c("aut", "cre"),
                      email = "rrpanda.phd2018.cs@nitrr.ac.in"),
               person(given = c("Naresh", "Kumar"),
                      family = "Nagwani",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DNAbin2index.Rd: DNAbin
  EmptyCells.Rd: DNAbin
  code.simple.gaps.Rd: DNAbin
  collapseUnsupportedEdges.Rd: phylo
  combMyTree.Rd: phylo
  del.miss.Rd: DNAbin
  deleteGaps.Rd: DNAbin
  fixNodes.Rd: phylo, read.nexus
  forceEqualTipHeights.Rd: is.ultrametric, chronos
  index2DNAbin.Rd: DNAbin
  ips-package.Rd: ladderize, rotate
  ips.16S.Rd: DNAbin
  ips.28S.Rd: DNAbin
  ips.cox1.Rd: DNAbin
  mafft.Rd: phylo
  mafft.merge.Rd: DNAbin, AAbin, phylo
  mrbayes.Rd: DNAbin
  multistate.Rd: ace
  neighboringPairs.Rd: mst
  ntip.Rd: phylo
  pathd8.Rd: phylo
  phylo2mafft.Rd: phylo
  phylo2mst.Rd: phylo
  pis.Rd: DNAbin
  raxml.Rd: DNAbin, phylo
  raxml.partitions.Rd: DNAbin, cbind.DNAbin
  rbeauti.Rd: DNAbin
  read.Rd: cbind.DNAbin
  sister.Rd: phylo
  splitIntoClades.Rd: phylo
  terminalSisters.Rd: phylo
  tipHeights.Rd: phylo, branching.times
  traitRate.Rd: phylo, DNAbin, read.tree
  write.fas.Rd: DNAbin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following HTML validation problems:
blastn.html:52:1 (blastn.Rd:14): Warning: missing </ul> before </div>
neighboringPairs.html:48:1 (neighboringPairs.Rd:10): Warning: missing </ul> before </div>
unlistFirstLevel.html:52:1 (unlistFirstLevel.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ipums_ddi-class.html:109:1 (ipums_ddi-class.Rd:58): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ipv_long_to_wide.html:55:1 (ipv_long_to_wide.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Ana Perez-Gonzalez <anapg@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Maria"),
                      family = "Bianco",
                      role = "aut"),
               person(given = "Graciela",
                      family = "Boente",
                      role = "aut"),
               person(given = "Ana",
                      family = "Perez-Gonzalez",
                      role = c("aut", "cre"),
                      email = "anapg@uvigo.es"))
as necessary.
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = "Rui",
                      family = "Wang",
                      role = "aut",
                      email = "rwang@hsph.harvard.edu"))
as necessary.
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Found the following HTML validation problems:
checkParameters.html:49:1 (checkParameters.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Eufrasio de A. Lima Neto <eufrasio@de.ufpb.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eufrasio", "de", "A.", "Lima", "Neto", "/", "Claudio", "A.", "V.", "de", "Souza", "Filho", "/", "Pedro", "R.", "D."),
                      family = "Marinho",
                      role = "aut"),
               person(given = c("Eufrasio", "de", "A.", "Lima"),
                      family = "Neto",
                      role = "cre",
                      email = "eufrasio@de.ufpb.br"))
as necessary.
Maintainer: ‘Jelena Kovacic <jkovacic@imi.hr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jelena",
                    family = "Kovacic",
                    role = c("aut", "cre"),
                    email = "jkovacic@imi.hr")
as necessary.
Maintainer: ‘Ivan Fuentes <jivfur@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ivan",
                      family = "Fuentes",
                      role = c("aut", "cre"),
                      email = "jivfur@tamu.edu"),
               person(given = "Thomas",
                      family = "DeWitt",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Ioerger",
                      role = "aut"),
               person(given = "Michael",
                      family = "Bishop",
                      role = "aut"))
as necessary.

The Description field contains
  proposed in Chen(2013) <arXiv:1606.03658>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
log.html:52:1 (log.Rd:17): Warning: missing </ul> before </div>
main.html:46:1 (main.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) partial_eigen.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) partial_eigen.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:41-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:47-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
summary.irlba_prcomp.html:51:1 (summary.irlba_prcomp.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
IRR2FPR_internal.html:76:1 (IRR2FPR_internal.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘Kilem L. Gwet <gwet@agreestat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kilem", "L."),
                      family = "Gwet",
                      role = c("aut", "cre"),
                      email = "gwet@agreestat.com"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
checkRd: (-1) bp.coeff.raw.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) fleiss.kappa.raw.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \&
Maintainer: ‘Kilem L. Gwet <gwet@agreestat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kilem", "L."),
                      family = "Gwet",
                      role = c("aut", "cre"),
                      email = "gwet@agreestat.com"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
Maintainer: ‘Markus Brueckl <markus.brueckl@tu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Brueckl",
                      role = c("aut", "cre"),
                      email = "markus.brueckl@tu-berlin.de"),
               person(given = "Florian",
                      family = "Heuer",
                      role = c("aut", "trl")))
as necessary.
Maintainer: ‘Matthias Gamer <m.gamer@uke.uni-hamburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthias",
                      family = "Gamer",
                      role = c("aut", "cre"),
                      email = "m.gamer@uke.uni-hamburg.de"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "aut",
                      email = "jim@bitwrit.com.au"),
               person(given = c("Ian", "Fellows", "Puspendra", "Singh"),
                      family = "<puspendra.pusp22@gmail.com>",
                      role = "aut",
                      email = "puspendra.pusp22@gmail.com"))
as necessary.
Maintainer: ‘Huseyin Yildiz <huseyinyildiz35@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Huseyin",
                    family = "Yildiz",
                    role = c("aut", "cre"),
                    email = "huseyinyildiz35@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc.pvalues.R’ ‘helper.R’ ‘hypothesis_templates.R’ ‘irtpwr.R’
    ‘mml.fit.R’ ‘setup.data.R’
Maintainer: ‘Ivailo Partchev <partchev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaojun",
                      family = "Li",
                      role = "aut"),
               person(given = "Ivailo",
                      family = "Partchev",
                      role = c("aut", "cre"),
                      email = "partchev@gmail.com"),
               person(given = "Paul",
                      family = "De Boeck",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bjorn Andersson <bjoern.h.andersson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjorn",
                    family = "Andersson",
                    role = c("aut", "cre"),
                    email = "bjoern.h.andersson@gmail.com")
as necessary.
Maintainer: ‘W. Kyle Hamilton <kyle.hamilton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "Kyle"),
                      family = "Hamilton",
                      role = c("aut", "cre"),
                      email = "kyle.hamilton@gmail.com"),
               person(given = "Atsushi",
                      family = "Mizumoto",
                      role = "aut",
                      email = "atsushi@mizumot.com"))
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Found the following HTML validation problems:
getAssayFileNames.html:72:1 (getAssayFileNames.Rd:27): Warning: missing </ul> before </div>
Maintainer: ‘Minyu Wang <minyu.wang@petermac.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Minyu", "Wang,Yu", "Sun,Yu-Kuan"),
                      family = "Huang",
                      role = "aut"),
               person(given = "Minyu",
                      family = "Wang",
                      role = "cre",
                      email = "minyu.wang@petermac.org"))
as necessary.
Maintainer: ‘Nicole Schwitter <Nicole.Schwitter.1@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicole",
                    family = "Schwitter",
                    role = c("aut", "cre"),
                    email = "nicole.schwitter.1@warwick.ac.uk")
as necessary.
Maintainer: ‘Loris Michel <michel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Loris",
                      family = "Michel",
                      role = c("aut", "cre"),
                      email = "michel@stat.math.ethz.ch"),
               person(given = "Meta-Lina",
                      family = "Spohn",
                      role = "aut"),
               person(given = "Jeffrey",
                      family = "Naef",
                      role = "aut"))
as necessary.

The Description field contains
  Michel et al. (2021) <arXiv:2106.03742>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Claus Ekstrom <ekstrom@sund.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Claus", "Thorn"),
                      family = "Ekstrøm",
                      role = "aut",
                      email = "ekstrom@sund.ku.dk"),
               person(given = "Helle",
                      family = "Sørensen",
                      role = "aut",
                      email = "helle@math.ku.dk"),
               person(given = "Claus",
                      family = "Ekstrom",
                      role = "cre",
                      email = "ekstrom@sund.ku.dk"))
as necessary.
Maintainer: ‘Peter Dillingham <peter.dillingham@otago.ac.nz>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) analyseISE.Rd:66: Lost braces; missing escapes or markup?
    66 |         False positive rate used for detection threshold (not output) to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                                                     ^
checkRd: (-1) analyseISE.Rd:69: Lost braces; missing escapes or markup?
    69 |         False negative rate used to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                ^
checkRd: (-1) describeISE.Rd:71: Lost braces; missing escapes or markup?
    71 |         False positive rate used for detection threshold (not output) to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                                                     ^
checkRd: (-1) describeISE.Rd:74: Lost braces; missing escapes or markup?
    74 |         False negative rate used to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                ^
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudia",
                      family = "van Borkulo",
                      role = "aut"),
               person(given = c("Sacha", "Epskamp;", "with", "contributions", "from", "Alexander"),
                      family = "Robitzsch",
                      role = "aut"),
               person(given = c("Mihai", "Alexandru"),
                      family = "Constantin",
                      role = "aut"),
               person(given = "Sacha",
                      family = "Epskamp",
                      role = "cre",
                      email = "mail@sachaepskamp.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chain-simulation.R’
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gareth",
                      family = "James",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Witten",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Gunjan Bansal <gunjan.1512@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adarsh",
                      family = "Anand",
                      role = "aut"),
               person(given = "Gunjan",
                      family = "Bansal",
                      role = c("aut", "cre"),
                      email = "gunjan.1512@gmail.com"))
as necessary.
Found the following HTML validation problems:
Mat_format.html:54:1 (Mat_format.Rd:14): Warning: missing </ul> before </div>
outputformat.html:46:1 (outputformat.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Hui Xie <huixie@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hui",
                      family = "Xie",
                      role = c("aut", "cre"),
                      email = "huixie@uic.edu"),
               person(given = "Weihua",
                      family = "Gao",
                      role = "aut"),
               person(given = "Baodong",
                      family = "Xing",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Heitjan",
                      role = "aut"),
               person(given = "Donald",
                      family = "Hedeker",
                      role = "aut"),
               person(given = "Chengbo",
                      family = "Yuan",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
summary.isniglmm.html:56:1 (summary.isniglmm.Rd:15): Warning: missing </ul> before </div>
summary.isnilmm.html:56:1 (summary.isnilmm.Rd:15): Warning: missing </ul> before </div>
summary.isnimgm.html:56:1 (summary.isnimgm.Rd:15): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iso8601todataframe.R’
Specified C++11: please drop specification unless essential
File ‘isoband/libs/isoband.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following HTML validation problems:
clip_lines.html:68:1 (clip_lines.Rd:23): Warning: missing </ul> before </div>
label_placer_simple.html:63:1 (label_placer_simple.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘David Conde <dconde@eio.uva.es>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Justin Mathias <justin.m.mathias@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Justin",
                    family = "Mathias",
                    role = c("aut", "cre"),
                    email = "justin.m.mathias@gmail.com")
as necessary.
Found the following HTML validation problems:
dot-assignmentMaker.html:62:1 (dot-assignmentMaker.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Alexander Henzi <henzi.alexander@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  See Henzi, Ziegel, Gneiting (2020) <arXiv:1909.03725>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
callAPI.html:52:1 (callAPI.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
orbi_add_blocks_to_plot.html:84:1 (orbi_add_blocks_to_plot.Rd:34): Warning: missing </ul> before </div>
orbi_check_isoraw.html:81:1 (orbi_check_isoraw.Rd:31): Warning: missing </ul> before </div>
orbi_filter_isox.html:47:1 (orbi_filter_isox.Rd:10): Warning: missing </ul> before </div>
orbi_filter_satellite_peaks.html:46:1 (orbi_filter_satellite_peaks.Rd:10): Warning: missing </ul> before </div>
orbi_filter_scan_intensity.html:50:1 (orbi_filter_scan_intensity.Rd:12): Warning: missing </ul> before </div>
orbi_filter_weak_isotopocules.html:46:1 (orbi_filter_weak_isotopocules.Rd:10): Warning: missing </ul> before </div>
orbi_get_settings.html:48:1 (orbi_get_settings.Rd:10): Warning: missing </ul> before </div>
orbi_plot_spectra.html:111:1 (orbi_plot_spectra.Rd:50): Warning: missing </ul> before </div>
orbi_segment_blocks.html:63:1 (orbi_segment_blocks.Rd:21): Warning: missing </ul> before </div>
orbi_set_settings.html:48:1 (orbi_set_settings.Rd:10): Warning: missing </ul> before </div>
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
Maintainer: ‘Rolf Turner <rolfturner@posteo.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "rolfturner@posteo.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calibfit.R’ ‘isofind.R’ ‘prepsources.R’ ‘serialize.R’
Found the following HTML validation problems:
IsoriX-defunct.html:42:1 (IsoriX-defunct.Rd:20): Warning: missing </ul> before </div>
Maintainer: ‘Matteo Lacki <matteo.lacki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mateusz", "Krzysztof"),
                      family = "Lacki",
                      role = "aut"),
               person(given = "Michal",
                      family = "Startek",
                      role = "aut"),
               person(given = "Matteo",
                      family = "Lacki",
                      role = "cre",
                      email = "matteo.lacki@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Mary Meyer <meyer@stat.colostate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mary", "C"),
                      family = "Meyer",
                      role = "aut"),
               person(given = "Jiwen",
                      family = "Wu",
                      role = "aut"),
               person(given = c("Jean", "D."),
                      family = "Opsomer",
                      role = "aut"),
               person(given = "Mary",
                      family = "Meyer",
                      role = "cre",
                      email = "meyer@stat.colostate.edu"))
as necessary.
Maintainer: ‘Uwe Block <u.block.mz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Uwe",
                      family = "Block",
                      role = c("aut", "cre"),
                      email = "u.block.mz@googlemail.com"),
               person(given = c("using", "an", "algorithm", "by", "Hatto"),
                      family = "von Hatzfeld",
                      role = "aut",
                      email = "hatto@salesianer.de"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bicycle_theft.R’ ‘car_fleet.R’ ‘crimes_against_life.R’
    ‘gun_seizure.R’ ‘gun_seizure_historical.R’ ‘monthly_stats.R’
    ‘monthly_stats_dictionary.R’ ‘population.R’ ‘spatial_info.R’
    ‘upp_data.R’ ‘yearly_stats.R’ ‘yearly_stats_dictionary.R’
checkRd: (-1) is_israd_database.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:26: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Manuel M. Müller <mm2559@cam.ac.uk>’

The Description field contains
  Reeve, Cannings and Samworth (2023) <arXiv:2305.04852v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Luiz Henrique Keng Queiroz Junior <keng@ufg.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luiz", "Henrique", "Keng", "Queiroz"),
                      family = "Junior",
                      role = c("aut", "cre"),
                      email = "keng@ufg.br"),
               person(given = c("Vitor", "Mendes"),
                      family = "de Oliveira",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/vitor-mendes-iq/iSTATS
which should likely be
  https://github.com/vitor-mendes-iq/iSTATS/issues
instead.
Maintainer: ‘Paul C Boutros <pboutros@mednet.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Natalie",
                      family = "Fox",
                      role = "aut"),
               person(given = c("Paul", "C"),
                      family = "Boutros",
                      role = "cre",
                      email = "pboutros@mednet.ucla.edu"))
as necessary.
Maintainer: ‘Andrew Teschendorff <a.teschendorff@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrew", "E"),
                      family = "Teschendorff",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Teschendorff",
                      role = "cre",
                      email = "a.teschendorff@ucl.ac.uk"))
as necessary.
Found the following files/directories:
  ‘RMTplot.pdf’
Maintainer: ‘Rebecca Steorts <beka@stat.duke.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘italy08.Rd’:
    \keyword{datasets,}
    \keyword{linkage,}
  File ‘italy10.Rd’:
    \keyword{datasets,}
    \keyword{linkage,}
Maintainer: ‘Michele Dalponte <michele.dalponte@fmach.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michele",
                    family = "Dalponte",
                    role = c("aut", "cre"),
                    email = "michele.dalponte@fmach.it")
as necessary.
Maintainer: ‘Cengiz Zopluoglu <cen.zop@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cengiz",
                    family = "Zopluoglu",
                    role = c("aut", "cre"),
                    email = "cen.zop@gmail.com")
as necessary.
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjoern",
                    family = "Bornkamp",
                    role = c("aut", "cre"),
                    email = "bbnkmp@mail.de")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iRNGStream.R’ ‘r_to_py.iteror.Rd’
Maintainer: ‘John A. Ramey <johnramey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "A."),
                      family = "Ramey",
                      role = c("aut", "cre"),
                      email = "johnramey@gmail.com"),
               person(given = "Kayla",
                      family = "Schaefer",
                      role = "aut",
                      email = "kschaefer.tx@gmail.com"))
as necessary.
Maintainer: ‘Steve Weston <stephen.b.weston@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steve",
                      family = "Weston",
                      role = c("aut", "cre"),
                      email = "stephen.b.weston@gmail.com"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
ireaddf.html:62:1 (ireaddf.Rd:15): Warning: missing </ul> before </div>
writedf.html:46:1 (writedf.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘Matthew Smith <matt_smith.90@hotmail.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Smith",
                    role = c("aut", "cre"),
                    email = "matt_smith.90@hotmail.co.uk")
as necessary.
Found the following HTML validation problems:
df_tree.html:58:1 (df_tree.Rd:16): Warning: missing </ul> before </div>
inbuilt_themes.html:98:1 (inbuilt_themes.Rd:37): Warning: missing </ul> before </div>
template_groups.html:87:1 (template_groups.Rd:47): Warning: missing </ul> before </div>
template_parameters_count.html:63:1 (template_parameters_count.Rd:19): Warning: missing </ul> before </div>
vector_tree.html:50:1 (vector_tree.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Nanne Aben <nanne.aben@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nanne",
                    family = "Aben",
                    role = c("aut", "cre"),
                    email = "nanne.aben@gmail.com")
as necessary.
Maintainer: ‘Thomas Bishop <tombishopemail@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Bishop",
                    role = c("aut", "cre"),
                    email = "tombishopemail@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘itrax_munsell.R’
Found the following HTML validation problems:
multivariate_import.html:58:1 (multivariate_import.Rd:16): Warning: missing </ul> before </div>
uid_labeller.html:49:1 (uid_labeller.Rd:10): Warning: missing </ul> before </div>
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fvisgam.Rd: gradientLegend
  plot_diff2.Rd: gradientLegend
  plot_parametric.Rd: dotplot_error
  plot_pca_surface.Rd: gradientLegend
  plot_topo.Rd: gradientLegend
  pvisgam.Rd: gradientLegend
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Patrick English <p.english@exeter.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "English",
                    role = c("aut", "cre"),
                    email = "p.english@exeter.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_conservation_status.R’ ‘get_vernacularname.R’
Maintainer: ‘Bo Zhang <bozhan@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "bozhan@wharton.upenn.edu")
as necessary.
Maintainer: ‘Yiqing Xu <yiqingxu@stanford.edu>’

The Description field contains
  <arXiv:2303.11399>, including bootstrapped confidence intervals,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bo Zhang <bozhan@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "bozhan@wharton.upenn.edu")
as necessary.

The Description field contains
  identification assumptions. Please refer to <arXiv:2002.02579> for more
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hyunseung Kang <hyunseung@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyunseung",
                      family = "Kang",
                      role = c("aut", "cre"),
                      email = "hyunseung@stat.wisc.edu"),
               person(given = "Yang",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Qingyuan",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Dylan",
                      family = "Small",
                      role = "aut"))
as necessary.
checkRd: (-1) sTsls.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{pi}{the matrix E[XZ']E[ZZ']^{-1}}
       |                                   ^
checkRd: (-1) sTslsSplines.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{pi}{matrix, corresponds to E[XZ']E[ZZ']^{-1}, the first stage
       |                                               ^
Found the following HTML validation problems:
extractcols.html:51:1 (extractcols.Rd:12): Warning: missing </ul> before </div>
qpSetup.html:61:1 (qpSetup.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Andrew Ying <aying9339@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Ying",
                    role = c("aut", "cre"),
                    email = "aying9339@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ivsacim.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
invalidivsacim_est.html:103:1 (invalidivsacim_est.Rd:45): Warning: missing </ul> before </div>
ivsacim_est.html:74:1 (ivsacim_est.Rd:24): Warning: missing </ul> before </div>
Found the following HTML validation problems:
iv-set-pairwise-deprecated.html:78:1 (iv-set-pairwise-deprecated.Rd:27): Warning: missing </ul> before </div>
iv-sets-deprecated.html:94:1 (iv-sets-deprecated.Rd:37): Warning: missing </ul> before </div>
Maintainer: ‘Arvid Sjolander <arvid.sjolander@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arvid",
                      family = "Sjolander",
                      role = c("aut", "cre"),
                      email = "arvid.sjolander@ki.se"),
               person(given = "Elisabeth",
                      family = "Dahlqwist",
                      role = "aut"),
               person(given = "Torben",
                      family = "Martinussen",
                      role = "aut"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:63:1 (inst/NEWS.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
extract.ivx.html:97:1 (extract.ivx.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Tri Ha Minh Nguyen <tringuyen_2023@depauw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tri", "Ha", "Minh", "Nguyen", "Jyotirmoy", "Sarkar", "Mamunur"),
                      family = "Rashid",
                      role = "aut"),
               person(given = c("Tri", "Ha", "Minh"),
                      family = "Nguyen",
                      role = "cre",
                      email = "tringuyen_2023@depauw.edu"))
as necessary.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Heng",
                      family = "Shu",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
verify_ixurl.html:46:1 (verify_ixurl.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
new_transition_function.html:50:1 (new_transition_function.Rd:14): Warning: missing </ul> before </div>
print.predictor_spec.html:51:1 (print.predictor_spec.Rd:12): Warning: missing </ul> before </div>
print.transition.html:51:1 (print.transition.Rd:12): Warning: missing </ul> before </div>
snow_cover_fun.html:54:1 (snow_cover_fun.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
encoding_data.html:46:1 (encoding_data.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
create_jaatha_model.html:65:1 (create_jaatha_model.Rd:20): Warning: missing </ul> before </div>
create_jaatha_model.coalmodel.html:116:1 (create_jaatha_model.coalmodel.Rd:58): Warning: missing </ul> before </div>
create_jaatha_model.default.html:63:1 (create_jaatha_model.default.Rd:20): Warning: missing </ul> before </div>
estimate_llh.html:91:1 (estimate_llh.Rd:38): Warning: missing </ul> before </div>
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Neo Christopher Chung <nchchung@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Neo", "Christopher"),
                      family = "Chung",
                      role = c("aut", "cre"),
                      email = "nchchung@gmail.com"),
               person(given = "Błażej",
                      family = "Miasojedow",
                      role = "aut",
                      email = "bmiasojedow@gmail.com"),
               person(given = "Michał",
                      family = "Startek",
                      role = "aut",
                      email = "M.Startek@mimuw.edu.pl"),
               person(given = "Anna",
                      family = "Gambin",
                      role = "aut",
                      email = "aniag@mimuw.edu.pl"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) jaccard.test.Rd:41: Lost braces; missing escapes or markup?
    41 | The {bootstrap} method uses resampling with replacement binary vectors to compute a p-value (see optional arguments).
       |     ^
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Maintainer: ‘Dmitry Prokopenko <dmitry.prokopenko@uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dmitry",
                    family = "Prokopenko",
                    role = c("aut", "cre"),
                    email = "dmitry.prokopenko@uni-bonn.de")
as necessary.
Found the following HTML validation problems:
tidy_bugs.html:59:1 (tidy_bugs.Rd:17): Warning: missing </ul> before </div>
Found the following HTML validation problems:
controlInputVariables.html:52:1 (controlInputVariables.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
crosstab.html:46:1 (crosstab.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Simon Urbanek <Simon.Urbanek@R-project.org>’

Package has FOSS license, installs .class/.jar but has no 'java' directory.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Maintainer: ‘Noelia Otero <noeli1680@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Noelia",
                    family = "Otero",
                    role = c("aut", "cre"),
                    email = "noeli1680@gmail.com")
as necessary.
Found the following HTML validation problems:
add_date.html:50:1 (add_date.Rd:12): Warning: missing </ul> before </div>
calculate_constant.html:50:1 (calculate_constant.Rd:12): Warning: missing </ul> before </div>
calculate_frequency.html:55:1 (calculate_frequency.Rd:14): Warning: missing </ul> before </div>
get_div.html:50:1 (get_div.Rd:12): Warning: missing </ul> before </div>
getmat_cwt.html:58:1 (getmat_cwt.Rd:16): Warning: missing </ul> before </div>
getname_hyb.html:46:1 (getname_hyb.Rd:10): Warning: missing </ul> before </div>
isnot_validcp.html:54:1 (isnot_validcp.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Shahla Faisal <shahla_ramzan@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shahla",
                    family = "Faisal",
                    role = c("aut", "cre"),
                    email = "shahla_ramzan@yahoo.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘jdenticon.R’
Maintainer: ‘Beilun Wang <bw4mw@virginia.edu>’

The Description field contains
  <arXiv:1806.00548>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/QData/jeek
which should likely be
  https://github.com/QData/jeek/issues
instead.
Found the following HTML validation problems:
validate_tables.html:46:1 (validate_tables.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Aron Eklund <eklund@cbs.dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qiyuan",
                      family = "Li",
                      role = "aut"),
               person(given = "Aron",
                      family = "Eklund",
                      role = c("aut", "cre"),
                      email = "eklund@cbs.dtu.dk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following HTML validation problems:
addZeroDiagonal.html:46:1 (addZeroDiagonal.Rd:10): Warning: missing </ul> before </div>
removeDiagonal.html:47:1 (removeDiagonal.Rd:10): Warning: missing </ul> before </div>
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/JFM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
compute_triangle_area_rcpp.html:40:1 (compute_triangle_area_rcpp.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Markus Helbig <mhelbig81@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Helbig",
                      role = c("aut", "cre"),
                      email = "mhelbig81@googlemail.com"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "aut"),
               person(given = "Ian",
                      family = "Fellows",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
supplements.html:129:1 (supplements.Rd:57): Warning: missing </ul> before </div>
Found the following HTML validation problems:
jipMtoDF.html:52:1 (jipMtoDF.Rd:14): Warning: missing </ul> before </div>
jip_Hajek.html:47:1 (jip_Hajek.Rd:11): Warning: missing </ul> before </div>
jip_HartleyRao.html:49:1 (jip_HartleyRao.Rd:11): Warning: missing </ul> before </div>
jip_Tille.html:57:1 (jip_Tille.Rd:16): Warning: missing </ul> before </div>
pre_tille.html:47:1 (pre_tille.Rd:10): Warning: missing </ul> before </div>
save_output.html:86:1 (save_output.Rd:36): Warning: missing </ul> before </div>
tille.html:67:1 (tille.Rd:21): Warning: missing </ul> before </div>
Maintainer: ‘James Balamuta <balamut2@illinois.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) jointLPM.Rd:298: Lost braces; missing escapes or markup?
   298 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2}*I_{n+1}(Y(t)),
       |                                                        ^
checkRd: (-1) jointLPM.Rd:298: Lost braces; missing escapes or markup?
   298 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2}*I_{n+1}(Y(t)),
       |                                                                ^
checkRd: (-1) jointLPM.Rd:299: Lost braces; missing escapes or markup?
   299 | where I_1,...,I_{n+1} is the basis of quadratic I-splines. To constraint the
       |                 ^
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:167:1 (inst/NEWS.Rd:78): Warning: missing </ul> before </div>
NEWS.html:47:1 (inst/NEWS.Rd:17): Warning: <h4> anchor "USER-VISIBLE-CHANGES" already defined
NEWS.html:85:1 (inst/NEWS.Rd:35): Warning: <h4> anchor "USER-VISIBLE-CHANGES" already defined
NEWS.html:100:1 (inst/NEWS.Rd:43): Warning: <h4> anchor "BUG-FIXES" already defined
NEWS.html:117:1 (inst/NEWS.Rd:53): Warning: <h4> anchor "USER-VISIBLE-CHANGES" already defined
NEWS.html:132:1 (inst/NEWS.Rd:61): Warning: <h4> anchor "USER-VISIBLE-CHANGES" already defined
Found the following HTML validation problems:
jmcmControl.html:69:1 (jmcmControl.Rd:24): Warning: missing </ul> before </div>
modular.html:123:1 (modular.Rd:60): Warning: missing </ul> before </div>
show-jmcmMod-method.html:48:1 (show-jmcmMod-method.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Ka Yui Karl Wu <karlwuky@suss.edu.sg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ka", "Yui", "Karl"),
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "karlwuky@suss.edu.sg")
as necessary.
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                          ^
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                                                                               ^
Found the following HTML validation problems:
show-powerLongSurv-method.html:47:1 (show-powerLongSurv-method.Rd:11): Warning: missing </ul> before </div>
Maintainer: ‘J. Patrick Meyer <meyerjp3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("J.", "Patrick"),
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "support@itemanalysis.com")
as necessary.
Maintainer: ‘Shanpeng Li <lishanpeng0913@ucla.edu>’

The Description field contains
  <arXiv:2301.06584>.  The proposed method models the within-subject
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zeng Xianli <a0123862@u.nus.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeng",
                      family = "Xianli",
                      role = c("aut", "cre"),
                      email = "a0123862@u.nus.edu"),
               person(given = "Hang",
                      family = "Weiqiang",
                      role = "aut",
                      email = "e0010758@u.nus.edu"))
as necessary.
Maintainer: ‘TszKin Julian Chan <ctszkin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("TszKin", "Julian"),
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "ctszkin@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/jmotif.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
early_abandoned_dist.html:57:1 (early_abandoned_dist.Rd:16): Warning: missing </ul> before </div>
euclidean_dist.html:51:1 (euclidean_dist.Rd:13): Warning: missing </ul> before </div>
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Steven T. Garren <GARRENST@JMU.EDU>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "T."),
                    family = "Garren",
                    role = c("aut", "cre"),
                    email = "garrenst@jmu.edu")
as necessary.
Found the following HTML validation problems:
canBeNumeric.html:46:1 (canBeNumeric.Rd:10): Warning: missing </ul> before </div>
create.html:66:1 (create.Rd:20): Warning: missing </ul> before </div>
dot-..html:50:1 (dot-..Rd:12): Warning: missing </ul> before </div>
dot-.html:50:1 (dot-.Rd:12): Warning: missing </ul> before </div>
extractErrorMessage.html:46:1 (extractErrorMessage.Rd:10): Warning: missing </ul> before </div>
marshalFormula.html:71:1 (marshalFormula.Rd:23): Warning: missing </ul> before </div>
reject.html:56:1 (reject.Rd:17): Warning: missing </ul> before </div>
startsWith.html:57:1 (startsWith.Rd:17): Warning: missing </ul> before </div>
toB64.html:49:1 (toB64.Rd:13): Warning: missing </ul> before </div>
toNumeric.html:47:1 (toNumeric.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
setAnalysisNotice.html:58:1 (setAnalysisNotice.Rd:16): Warning: missing </ul> before </div>
setRefLevelWarning.html:50:1 (setRefLevelWarning.Rd:12): Warning: missing </ul> before </div>
setSingularityWarning.html:46:1 (setSingularityWarning.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Philip Pallmann <p.pallmann@lancaster.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Markus Burkhardt <markus.burkhardt@psychologie.tu-chemnitz.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘TODAM2.Rd’:
    https://doi.org/10.1006/jmps.2000.1339
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helpfunctions_melt.R’
Found the following HTML validation problems:
Surv.html:92:1 (Surv.Rd:46): Warning: missing </ul> before </div>
add_linebreaks.html:55:1 (add_linebreaks.Rd:14): Warning: missing </ul> before </div>
all_vars.html:46:1 (all_vars.Rd:10): Warning: missing </ul> before </div>
bs.html:90:1 (bs.Rd:40): Warning: missing </ul> before </div>
check_rd_vcov.html:51:1 (check_rd_vcov.Rd:13): Warning: missing </ul> before </div>
difftime_df.html:46:1 (difftime_df.Rd:10): Warning: missing </ul> before </div>
duration_obj.html:46:1 (duration_obj.Rd:10): Warning: missing </ul> before </div>
extract_id.html:51:1 (extract_id.Rd:12): Warning: missing </ul> before </div>
get_Mlist.html:46:1 (get_Mlist.Rd:10): Warning: missing </ul> before </div>
get_family.html:46:1 (get_family.Rd:10): Warning: missing </ul> before </div>
get_modeltype.html:46:1 (get_modeltype.Rd:10): Warning: missing </ul> before </div>
ns.html:78:1 (ns.Rd:32): Warning: missing </ul> before </div>
paste_linpred.html:77:1 (paste_linpred.Rd:27): Warning: missing </ul> before </div>
rd_vcov.html:89:1 (rd_vcov.Rd:37): Warning: missing </ul> before </div>
reformat_difftime.html:46:1 (reformat_difftime.Rd:10): Warning: missing </ul> before </div>
sharedParams.html:183:1 (sharedParams.Rd:104): Warning: missing </ul> before </div>
sum_duration.html:56:1 (sum_duration.Rd:18): Warning: missing </ul> before </div>
Maintainer: ‘Maciej Beręsewicz <maciej.beresewicz@ue.poznan.pl>’

The Description field contains
  details <arXiv:2308.13281>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takeshi",
                    family = "Emura",
                    role = c("aut", "cre"),
                    email = "takeshiemura@gmail.com")
as necessary.
Maintainer: ‘Cedric Gouy-Pailler <cedric.gouypailler@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cedric",
                    family = "Gouy-Pailler",
                    role = c("aut", "cre"),
                    email = "cedric.gouypailler@gmail.com")
as necessary.
Found the following HTML validation problems:
retour_sn.html:46:1 (retour_sn.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Matteo Quartagno <m.quartagno@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matteo",
                      family = "Quartagno",
                      role = c("aut", "cre"),
                      email = "m.quartagno@ucl.ac.uk"),
               person(given = "James",
                      family = "Carpenter",
                      role = "aut"))
as necessary.
Maintainer: ‘Johannes Breidenbach <job@nibio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Breidenbach",
                    role = c("aut", "cre"),
                    email = "job@nibio.no")
as necessary.
Found the following HTML validation problems:
base64url_encode.html:55:1 (base64url_encode.Rd:15): Warning: missing </ul> before </div>
jwt_claim.html:87:1 (jwt_claim.Rd:36): Warning: missing </ul> before </div>
Found the following HTML validation problems:
grid_probs.html:59:1 (grid_probs.Rd:17): Warning: missing </ul> before </div>
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘joyn-merge.R’
Found the following HTML validation problems:
joyn.html:222:1 (joyn.Rd:153): Warning: <h3> anchor "reporttype" already defined
Maintainer: ‘Ashwini Maurya <mauryaas@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashwini",
                    family = "Maurya",
                    role = c("aut", "cre"),
                    email = "mauryaas@msu.edu")
as necessary.
Found the following HTML validation problems:
cut_off.html:46:1 (cut_off.Rd:10): Warning: missing </ul> before </div>
is_mesh.html:48:1 (is_mesh.Rd:14): Warning: missing </ul> before </div>
Maintainer: ‘Hengrui Cai <hcai5@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hengrui",
                      family = "Cai",
                      role = c("aut", "cre"),
                      email = "hcai5@ncsu.edu"),
               person(given = "Chengchun",
                      family = "shi",
                      role = "aut",
                      email = "cshi4@ncsu.edu"),
               person(given = "Rui",
                      family = "Song",
                      role = "aut",
                      email = "rsong@ncsu.edu"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut",
                      email = "wlu4@ncsu.edu"))
as necessary.
Maintainer: ‘Daniel R. Miranda-Esquivel <dmiranda@uis.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "R."),
                    family = "Miranda-Esquivel",
                    role = c("aut", "cre"),
                    email = "dmiranda@uis.edu.co")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
anova-jrt-method.html:47:1 (anova-jrt-method.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
duration.html:88:1 (duration.Rd:38): Warning: missing </ul> before </div>
edate.html:52:1 (edate.Rd:13): Warning: missing </ul> before </div>
equiv.rate.html:61:1 (equiv.rate.Rd:19): Warning: missing </ul> before </div>
irr.html:109:1 (irr.Rd:54): Warning: missing </ul> before </div>
npv.html:81:1 (npv.Rd:34): Warning: missing </ul> before </div>
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Navid Ahmadinejad <navidfr@asu.edu>’

The Description field contains
  <arXiv:2109.01306>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces
    45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr 
       |                                             ^
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces; missing escapes or markup?
    45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr 
       |                                                ^
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces
    45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr 
       |                                                      ^
Found the following HTML validation problems:
print.indirect_index.html:56:1 (print.indirect_index.Rd:14): Warning: missing </ul> before </div>
print.mediation_model.html:56:1 (print.mediation_model.Rd:14): Warning: missing </ul> before </div>
Found the following HTML validation problems:
DataManager.html:180:1 (DataManager.Rd:103): Warning: missing </ul> before </div>
DataManager.html:133:1 (DataManager.Rd:78): Warning: <h5> anchor "Usage" already defined
DataManager.html:139:1 (DataManager.Rd:82): Warning: <h5> anchor "Returns" already defined
DataManager.html:157:1 (DataManager.Rd:92): Warning: <h5> anchor "Usage" already defined
DataManager.html:163:1 (DataManager.Rd:96): Warning: <h5> anchor "Arguments" already defined
Maintainer: ‘Mauricio Santelices <m.santelicesa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauricio",
                    family = "Santelices",
                    role = c("aut", "cre"),
                    email = "m.santelicesa@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following HTML validation problems:
as.collection.html:68:1 (as.collection.Rd:22): Warning: missing </ul> before </div>
as.dataset.html:71:1 (as.dataset.Rd:23): Warning: missing </ul> before </div>
autounbox.html:47:1 (autounbox.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
json_schema.html:126:1 (json_schema.Rd:140): Warning: <h5> anchor "Usage" already defined
json_schema.html:138:1 (json_schema.Rd:150): Warning: <h5> anchor "Arguments" already defined
json_schema.html:179:1 (json_schema.Rd:182): Warning: <h5> anchor "Usage" already defined
json_schema.html:185:1 (json_schema.Rd:186): Warning: <h5> anchor "Arguments" already defined
Found the following HTML validation problems:
jsTree-shiny.html:68:1 (jsTree-shiny.Rd:25): Warning: missing </ul> before </div>
Found the following HTML validation problems:
bnfit_to_cpts.html:47:1 (bnfit_to_cpts.Rd:10): Warning: missing </ul> before </div>
getters.html:73:1 (getters.Rd:37): Warning: missing </ul> before </div>
jt_nbinary_ops.html:63:1 (jt_nbinary_ops.Rd:20): Warning: missing </ul> before </div>
sim_data_from_dmrf.html:76:1 (sim_data_from_dmrf.Rd:30): Warning: missing </ul> before </div>
triangulate.html:144:1 (triangulate.Rd:71): Warning: missing </ul> before </div>
Found the following HTML validation problems:
get_colors.html:62:1 (get_colors.Rd:19): Warning: missing </ul> before </div>
gridlines.html:70:1 (gridlines.Rd:31): Warning: missing </ul> before </div>
interactions_deprecated.html:55:1 (interactions_deprecated.Rd:22): Warning: missing </ul> before </div>
knit_print.summ.html:68:1 (knit_print.summ.Rd:26): Warning: missing </ul> before </div>
make_predictions.html:187:1 (make_predictions.Rd:112): Warning: missing </ul> before </div>
md_table.html:89:1 (md_table.Rd:40): Warning: missing </ul> before </div>
num_print.html:56:1 (num_print.Rd:15): Warning: missing </ul> before </div>
set_summ_defaults.html:129:1 (set_summ_defaults.Rd:64): Warning: missing </ul> before </div>
wtd.sd.html:51:1 (wtd.sd.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Stephen H-T. Lihn <stevelihn@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘jubilee-package.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘jubilee.ols.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘jubilee.predict.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘tri.wave-class.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
  File ‘triangle.Rd’:
    http://dx.doi.org/10.2139/ssrn.3156574
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release juicr (2017 - 2021)
Found the following HTML validation problems:
JuliaObjectFields.html:67:1 (JuliaObjectFields.Rd:30): Warning: missing </ul> before </div>
autowrap.html:55:1 (autowrap.Rd:15): Warning: missing </ul> before </div>
install_julia.html:54:1 (install_julia.Rd:16): Warning: missing </ul> before </div>
julia_markdown_setup.html:52:1 (julia_markdown_setup.Rd:12): Warning: missing </ul> before </div>
julia_notebook_setup.html:47:1 (julia_notebook_setup.Rd:10): Warning: missing </ul> before </div>
julia_source.html:46:1 (julia_source.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
Julia-Setup.html:82:1 (Julia-Setup.Rd:44): Warning: missing </ul> before </div>
Found the following HTML validation problems:
ac_blank_line.html:52:1 (ac_blank_line.Rd:14): Warning: missing </ul> before </div>
lsmeans_wide_second_split_fun_fct.html:50:1 (lsmeans_wide_second_split_fun_fct.Rd:12): Warning: missing </ul> before </div>
smart_colwidths_1page.html:78:1 (smart_colwidths_1page.Rd:30): Warning: missing </ul> before </div>
tefos03_afun.html:69:1 (tefos03_afun.Rd:23): Warning: missing </ul> before </div>
Found the following HTML validation problems:
estimate_time_diploid.html:102:1 (estimate_time_diploid.Rd:49): Warning: missing </ul> before </div>
Maintainer: ‘Gjalt-Jorn Peters <justifier@opens.science>’

Found the following (possibly) invalid URLs:
  URL: https:yaml.org
    From: DESCRIPTION
    Message: Invalid URL: missing authority part
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘export_to_json.Rd’ ‘import_from_json.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘just.install.R’
Found the following HTML validation problems:
APAStyler.html:50:1 (APAStyler.Rd:12): Warning: missing </ul> before </div>
APAStyler.lm.html:68:1 (APAStyler.lm.Rd:21): Warning: missing </ul> before </div>
APAStyler.mira.html:72:1 (APAStyler.mira.Rd:23): Warning: missing </ul> before </div>
geom_tufterange.html:173:1 (geom_tufterange.Rd:103): Warning: missing </ul> before </div>
theme_tufte.html:51:1 (theme_tufte.Rd:12): Warning: missing </ul> before </div>
Found the following HTML validation problems:
auto_index.html:48:1 (auto_index.Rd:10): Warning: missing </ul> before </div>
cell_spec.html:189:1 (cell_spec.Rd:116): Warning: missing </ul> before </div>
header_separate.html:59:1 (header_separate.Rd:15): Warning: missing </ul> before </div>
kable_as_image.html:89:1 (kable_as_image.Rd:41): Warning: missing </ul> before </div>
kable_as_xml.html:46:1 (kable_as_xml.Rd:10): Warning: missing </ul> before </div>
kable_classic.html:105:1 (kable_classic.Rd:64): Warning: missing </ul> before </div>
linebreak.html:60:1 (linebreak.Rd:17): Warning: missing </ul> before </div>
spec_angle.html:59:1 (spec_angle.Rd:17): Warning: missing </ul> before </div>
spec_boxplot.html:153:1 (spec_boxplot.Rd:74): Warning: missing </ul> before </div>
spec_color.html:96:1 (spec_color.Rd:44): Warning: missing </ul> before </div>
spec_font_size.html:63:1 (spec_font_size.Rd:19): Warning: missing </ul> before </div>
spec_hist.html:134:1 (spec_hist.Rd:63): Warning: missing </ul> before </div>
spec_image.html:64:1 (spec_image.Rd:18): Warning: missing </ul> before </div>
spec_plot.html:173:1 (spec_plot.Rd:92): Warning: missing </ul> before </div>
spec_pointrange.html:146:1 (spec_pointrange.Rd:71): Warning: missing </ul> before </div>
spec_popover.html:65:1 (spec_popover.Rd:23): Warning: missing </ul> before </div>
spec_tooltip.html:51:1 (spec_tooltip.Rd:13): Warning: missing </ul> before </div>
xml_as_kable.html:46:1 (xml_as_kable.Rd:10): Warning: missing </ul> before </div>
Maintainer: ‘Gerrit Eichner <gerrit.eichner@math.uni-giessen.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘kader.Rd’:
    http://dx.doi.org/10.1016/j.spl.2011.01.013
    http://dx.doi.org/10.1016/j.jspi.2012.03.011
    http://dx.doi.org/10.1080/10485252.2012.760737
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kantorovich_ompr.R’
Maintainer: ‘Hannah Franziska Löchel <loechelh@mathematik.uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dominik",
                      family = "Eger",
                      role = "aut"),
               person(given = c("Hannah", "Franziska"),
                      family = "Löchel",
                      role = c("aut", "cre"),
                      email = "loechelh@mathematik.uni-marburg.de"))
as necessary.
Maintainer: ‘Muammer Albayrak <m.albayrak@ktu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Muammer",
                    family = "Albayrak",
                    role = c("aut", "cre"),
                    email = "m.albayrak@ktu.edu.tr")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kappa_inference.R’
Maintainer: ‘Frédéric Santos <frederic.santos@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frédéric",
                    family = "Santos",
                    role = c("aut", "cre"),
                    email = "frederic.santos@u-bordeaux.fr")
as necessary.
Maintainer: ‘Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Grabisch",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Kojadinovic",
                      role = c("aut", "cre"),
                      email = "ivan.kojadinovic@univ-pau.fr"),
               person(given = "Patrick",
                      family = "Meyer.",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael A Rotondi <mrotondi@yorku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "A"),
                    family = "Rotondi",
                    role = c("aut", "cre"),
                    email = "mrotondi@yorku.ca")
as necessary.
checkRd: (-1) get.fit.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:57-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:61-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Found the following HTML validation problems:
separateEntry.html:68:1 (separateEntry.Rd:26): Warning: missing </ul> before </div>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘GaussianMixtureCalls.R’
Running examples in ‘karyotapR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getCytobands
> ### Title: Add chromosome cytobands and chromosome arms to
> ###   'TapestriExperiment'
> ### Aliases: getCytobands
> 
> ### ** Examples
> 
> tap.object <- newTapestriExperimentExample() # example TapestriExperiment object
ℹ Moving gRNA probe  to `altExp` slot "grnaCounts".
ℹ Moving barcode probe  to `altExp` slot "barcodeCounts".
ℹ Moving chrY probe(s) probe_231, probe_232, probe_233, probe_234, probe_235, probe_236, probe_237, probe_238, probe_239, and probe_240 to `altExp` slot "chrYCounts".
> tap.object <- getCytobands(tap.object, genome = "hg19")
ℹ Adding cytobands from hg19.
Loading required namespace: GenomeInfoDb
Failed with error:  ‘there is no package called ‘GenomeInfoDb’’
Error in .requirePackage(package) : 
  unable to load required package ‘GenomeInfoDb’
Calls: getCytobands ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Wiemann <wiemann@uchicago.edu>’

The Description field contains
  (2023) <arXiv:2311.17021> for expectation function estimation
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yves Ismael Ngounou Bakam <yvesngounou20@gmail.com>’

The Description field contains
  Bakam and Denys Pommeret (2022) <arXiv:2112.05623> and Yves I. Ngounou
  Bakam and Denys Pommeret (2022) <arXiv:2211.06338>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kristof Meers <kristof.meers+cran@kuleuven.be>’

The Description field contains
  detection proposed by Arlot et al. (2012) <arXiv:1202.3878> is then
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Karne Chaithanya Sai <karnechaithanyasai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Karne", "Chaithanya"),
                    family = "Sai",
                    role = c("aut", "cre"),
                    email = "karnechaithanyasai@gmail.com")
as necessary.
Maintainer: ‘Karne Chaithanya Sai <karnechaithanyasai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Karne", "Chaithanya"),
                    family = "Sai",
                    role = c("aut", "cre"),
                    email = "karnechaithanyasai@gmail.com")
as necessary.
Found the following HTML validation problems:
base_block.html:78:1 (base_block.Rd:26): Warning: missing </ul> before </div>
base_ribbon.html:58:1 (base_ribbon.Rd:16): Warning: missing </ul> before </div>
create_G.html:50:1 (create_G.Rd:12): Warning: missing </ul> before </div>
dmvnorm.html:54:1 (dmvnorm.Rd:14): Warning: missing </ul> before </div>
formula.to.structure.html:55:1 (formula.to.structure.Rd:14): Warning: missing </ul> before </div>
ginv.html:46:1 (ginv.Rd:10): Warning: missing </ul> before </div>
rmvnorm.html:54:1 (rmvnorm.Rd:14): Warning: missing </ul> before </div>
var_decomp.html:46:1 (var_decomp.Rd:10): Warning: missing </ul> before </div>
checkRd: (-1) kdist.Rd:14: Lost braces; missing escapes or markup?
    14 | The {kdist} functions dk, pk, qk and rk, calculates the K-distribution
       |     ^
Maintainer: ‘Iago Giné-Vázquez <iago.gin-vaz@protonmail.com>’

The Description field contains
  in Arsalane Chouaib Guidoum (2020) <arXiv:2012.06102> [stat.CO]).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Paavo Jumppanen<paavo.jumppanen@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paavo",
                    family = "Jumppanen",
                    role = c("aut", "cre"),
                    email = "paavo.jumppanen@csiro.au")
as necessary.
Maintainer: ‘Claudia Vitolo <cvitolodev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudia",
                      family = "Vitolo",
                      role = c("aut", "cre"),
                      email = "cvitolodev@gmail.com"),
               person(given = "Allan",
                      family = "Tucker",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Russell",
                      role = "aut"))
as necessary.

The Description field contains
  http://www.brunel.ac.uk/ife/britishcouncil). It refers to the
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Mateusz Staniak <mateusz.staniak@math.uni.wroc.pl>’

The Description field contains
  Jasiulis-Gołdyn (2014) <arXiv:1412.0220>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
print.kendall_simulation.html:51:1 (print.kendall_simulation.Rd:12): Warning: missing </ul> before </div>
print.kendall_summary.html:51:1 (print.kendall_summary.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘A.I. McLeod <aimcleod@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "A.I.",
                    family = "McLeod",
                    role = c("aut", "cre"),
                    email = "aimcleod@uwo.ca")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  MannKendall.Rd: tsboot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' calls not declared from:
  ‘MCMCglmm’ ‘car’ ‘coda’ ‘emmeans’ ‘lattice’ ‘outliers’
Maintainer: ‘Björn Andersson <bjoern.h.andersson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following HTML validation problems:
Metric.html:122:1 (Metric.Rd:74): Warning: <h4> anchor "Usage-with-+E2+80+98compile+28+29+E2+80+99+3A" already defined
back-compat.html:50:1 (back-compat.Rd:13): Warning: missing </ul> before </div>
Found the following HTML validation problems:
application_nasnet.html:163:1 (application_nasnet.Rd:98): Warning: missing </ul> before </div>
clone_model.html:69:1 (clone_model.Rd:27): Warning: missing </ul> before </div>
generator_next.html:52:1 (generator_next.Rd:13): Warning: missing </ul> before </div>
image_data_generator.html:184:1 (image_data_generator.Rd:94): Warning: missing </ul> before </div>
loss_cosine_proximity.html:47:1 (loss_cosine_proximity.Rd:10): Warning: missing </ul> before </div>
metric_cosine_proximity.html:55:1 (metric_cosine_proximity.Rd:12): Warning: missing </ul> before </div>
plot.keras_training_history.html:85:1 (plot.keras_training_history.Rd:36): Warning: missing </ul> before </div>
regularizer_l1.html:58:1 (regularizer_l1.Rd:20): Warning: missing </ul> before </div>
sequential_model_input_layer.html:100:1 (sequential_model_input_layer.Rd:48): Warning: missing </ul> before </div>
Maintainer: ‘Hoseung Song <hsong3@fredhutch.org>’

The Description field contains
  conditions.  Song, H. and Wu, M.C. (2023) <arXiv:2307.15268>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yi Yang <yiyang@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yiyang@umn.edu"),
               person(given = "Teng",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut"))
as necessary.
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.
Maintainer: ‘Tymoteusz Wolodzko <twolodzko+kernelboot@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tymoteusz",
                    family = "Wolodzko",
                    role = c("aut", "cre"),
                    email = "twolodzko+kernelboot@gmail.com")
as necessary.
Found the following HTML validation problems:
summary.kernelboot.html:60:1 (summary.kernelboot.Rd:17): Warning: missing </ul> before </div>
Maintainer: ‘Michel Ballings <Michel.Ballings@GMail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                          ^
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                                                                                                   ^
Found the following HTML validation problems:
dshape3dProp.html:93:1 (dshape3dProp.Rd:39): Warning: missing </ul> before </div>
Maintainer: ‘Brian McGuire <mcguirebc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Angelo",
                      family = "Mazza",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Punzo",
                      role = "aut"),
               person(given = "Brian",
                      family = "McGuire",
                      role = c("aut", "cre"),
                      email = "mcguirebc@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) subjOCCDIF.Rd:23: Lost braces
    23 | the scale on which to evaluate each subject. \code{stype = "ObsScore"} uses the subject's total score. \code{stype = "Theta"} uses the subject's rank on the \code{thetadist} scale. \code{stype = "ThetaML"} uses the maximum likelihood estimate for the subject on the \code{thetadist} scale. code{stype = "ScoreML"} uses the maximum likelihood estimate for the subject on the overall test score scale.
       |                                                                                                                                                                                                                                                                                                       ^
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  (2022) <arXiv:2206.01853>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hoseung Song <hosong@ucdavis.edu>’

The Description field contains
  <arXiv:2011.06127>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
calc_PGtheta_R.html:58:1 (calc_PGtheta_R.Rd:16): Warning: missing </ul> before </div>
covariates_get.html:46:1 (covariates_get.Rd:10): Warning: missing </ul> before </div>
covariates_info.html:46:1 (covariates_info.Rd:10): Warning: missing </ul> before </div>
keyATM_fit_HMM.html:50:1 (keyATM_fit_HMM.Rd:12): Warning: missing </ul> before </div>
keyATM_fit_LDA.html:50:1 (keyATM_fit_LDA.Rd:12): Warning: missing </ul> before </div>
keyATM_fit_LDAHMM.html:50:1 (keyATM_fit_LDAHMM.Rd:12): Warning: missing </ul> before </div>
keyATM_fit_LDAcov.html:50:1 (keyATM_fit_LDAcov.Rd:12): Warning: missing </ul> before </div>
keyATM_fit_base.html:50:1 (keyATM_fit_base.Rd:12): Warning: missing </ul> before </div>
keyATM_fit_cov.html:50:1 (keyATM_fit_cov.Rd:12): Warning: missing </ul> before </div>
keyATM_fit_covPG.html:50:1 (keyATM_fit_covPG.Rd:12): Warning: missing </ul> before </div>
keyATMvb_call.html:46:1 (keyATMvb_call.Rd:10): Warning: missing </ul> before </div>
make_wsz_cpp.html:54:1 (make_wsz_cpp.Rd:14): Warning: missing </ul> before </div>
multiPGreg.html:66:1 (multiPGreg.Rd:20): Warning: missing </ul> before </div>
predict.keyATM_output.html:104:1 (predict.keyATM_output.Rd:45): Warning: missing </ul> before </div>
read_dfm_cpp.html:58:1 (read_dfm_cpp.Rd:16): Warning: missing </ul> before </div>
Maintainer: ‘Xiaomeng Yuan <xiaomeng.yuan@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaomeng",
                      family = "Yuan",
                      role = c("aut", "cre"),
                      email = "xiaomeng.yuan@stjude.org"),
               person(given = "Chen",
                      family = "Li",
                      role = "aut"),
               person(given = "Hongying",
                      family = "Sun",
                      role = "aut"),
               person(given = "Li",
                      family = "Tang",
                      role = "aut"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
rename-keys-scoped.html:67:1 (rename-keys-scoped.Rd:25): Warning: missing </ul> before </div>
Maintainer: ‘Thoralf Mildenberger <mild@zhaw.ch>’

The Description field contains
  <arXiv:2308.13383>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Weihua An <weihua.an@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Weihua", "An;", "Yu-Hsin"),
                      family = "Liu",
                      role = "aut"),
               person(given = "Weihua",
                      family = "An",
                      role = "cre",
                      email = "weihua.an@emory.edu"))
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Jon",
                      family = "Griffiths",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
b_wincred_decode_auto.html:48:1 (b_wincred_decode_auto.Rd:11): Warning: missing </ul> before </div>
b_wincred_get.html:75:1 (b_wincred_get.Rd:24): Warning: missing </ul> before </div>
b_wincred_set_with_raw_value.html:94:1 (b_wincred_set_with_raw_value.Rd:39): Warning: missing </ul> before </div>
Maintainer: ‘Josh Gilfillan <joshua.i.gilfillan+keyringr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josh",
                    family = "Gilfillan",
                    role = c("aut", "cre"),
                    email = "joshua.i.gilfillan+keyringr@gmail.com")
as necessary.
checkRd: (-1) useKeys.Rd:13: Lost braces; missing escapes or markup?
    13 | This function adds the {keys} dependencies to your application
       |                        ^
Found the following HTML validation problems:
updateKeys.html:58:1 (updateKeys.Rd:19): Warning: missing </ul> before </div>
Maintainer: ‘Max Candocia <maxcandocia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Candocia",
                    role = c("aut", "cre"),
                    email = "maxcandocia@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor Changes
Maintainer: ‘Kyle Nickodem <kyle.nickodem@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kyle",
                      family = "Nickodem",
                      role = c("aut", "cre"),
                      email = "kyle.nickodem@gmail.com"),
               person(given = "Peter",
                      family = "Halpin",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
print.KFS.html:60:1 (print.KFS.Rd:17): Warning: missing </ul> before </div>
print.SSModel.html:51:1 (print.SSModel.Rd:12): Warning: missing </ul> before </div>
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
checkRd: (-1) kfda.Rd:26: Lost braces
    26 |  \item{kpca.train}{An object of class "kpca". It has results of \code{kpca} function. (see{\code{\link[kernlab]{kpca}}} (in package \pkg{kernlab}))}
       |                                                                                           ^
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Koohafkan",
                    role = c("aut", "cre"),
                    email = "michael.koohafkan@gmail.com")
as necessary.
Maintainer: ‘Isabelle Sanchez <isabelle.sanchez@inrae.fr>’

The Description field contains
  e-Print: <arXiv:2208.00961>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                          ^
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                                  ^
Maintainer: ‘Rou Zhong <zhong_rou@163.com>’

The Description field contains
  Shishi Liu, Haocheng Li, Jingxiao Zhang. (2021) <arXiv:2102.01286>. Rou
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following HTML validation problems:
mc_exists.html:46:1 (mc_exists.Rd:10): Warning: missing </ul> before </div>
miniconda_conda.html:46:1 (miniconda_conda.Rd:10): Warning: missing </ul> before </div>
Found the following HTML validation problems:
khroma-defunct.html:40:1 (khroma-defunct.Rd:7): Warning: missing </ul> before </div>
Maintainer: ‘Victor Moreno <v.moreno@iconcologia.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Victor",
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "v.moreno@iconcologia.net"),
               person(given = "Nilanjan",
                      family = "Chatterjee",
                      role = "aut"),
               person(given = "Bhramar",
                      family = "Mukherjee",
                      role = "aut"))
as necessary.
checkRd: (-1) mount_appdata.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{x}{An object of class \code{KinPairData} or {KinPairSimulation}}
       |                                                   ^
Maintainer: ‘Pablo Rodriguez-Sanchez <pablo.rodriguez.sanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Rodriguez-Sanchez",
                      role = c("aut", "cre"),
                      email = "pablo.rodriguez.sanchez@gmail.com",
                      comment = "https://pabrod.github.io"),
               person(given = c("Sanne", "J.", "P."),
                      family = "van den Berg",
                      role = "aut",
                      comment = "https://www.wur.nl/en/Persons/Sanne-dr.-SJP-Sanne-van-den-Berg.htm"))
as necessary.
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:35:1 (inst/NEWS.Rd:10): Warning: <h3> anchor "Changes-in-version-1.8.0" already defined
Maintainer: ‘John Muschelli <muschellij2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Muschelli",
                    role = c("aut", "cre"),
                    email = "muschellij2@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘balance.R’ ‘data.R’ ‘order.R’ ‘revise.R’ ‘utils.R’
Maintainer: ‘Xiang Lyu <xianglyu@berkeley.edu>’

The Description field contains
  Nonparametric Additive Models”. arXiv preprint <arXiv:2105.11659>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Uwe Ligges <ligges@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Roever",
                      role = "aut"),
               person(given = "Nils",
                      family = "Raabe",
                      role = "aut"),
               person(given = "Karsten",
                      family = "Luebke",
                      role = "aut"),
               person(given = "Uwe",
                      family = "Ligges",
                      role = c("aut", "cre"),
                      email = "ligges@statistik.tu-dortmund.de"),
               person(given = "Gero",
                      family = "Szepannek",
                      role = "aut"),
               person(given = "Marc",
                      family = "Zentgraf",
                      role = "aut"),
               person(given = "David",
                      family = "Meyer",
                      role = "aut"))
as necessary.
Found the following HTML validation problems:
dmvnorm.html:53:1 (dmvnorm.Rd:12): Warning: missing </ul> before </div>
Running examples in ‘klassR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: update_klass_node
> ### Title: Given a node and a graph, find the node at the end of a sequence
> ###   of changes.
> ### Aliases: update_klass_node
> 
> ### ** Examples
> 
> 
> # Build a graph directed towards the most recent codes.
> library(klassR)
> klass_131 <- klass_graph(131)
Error in `FUN()`:
! Error: Logical index length does not match the number of edges.
  Recycling is not allowed.
Backtrace:
    ▆
 1. └─klassR::klass_graph(131)
 2.   ├─igraph::reverse_edges(...)
 3.   │ └─igraph:::as_igraph_es(graph, eids)
 4.   ├─igraph::E(graph)[igraph::E(graph)$changeOccurred > date]
 5.   └─igraph:::`[.igraph.es`(...)
 6.     └─base::lapply(...)
 7.       └─igraph (local) FUN(X[[i]], ...)
 8.         └─cli::cli_abort("Error: Logical index length does not match the number of edges. Recycling is not allowed.")
 9.           └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
get_family 0.228  0.006   5.439
Found the following HTML validation problems:
CheckDate.html:46:1 (CheckDate.Rd:10): Warning: missing </ul> before </div>
get_variant_name.html:48:1 (get_variant_name.Rd:11): Warning: missing </ul> before </div>
Found the following validation problem for the NEWS.Rd HTML conversion:
NEWS.html:55:1 (inst/NEWS.Rd:19): Warning: <h4> anchor "fixed" already defined
NEWS.html:69:1 (inst/NEWS.Rd:25): Warning: <h4> anchor "changed" already defined
NEWS.html:103:1 (inst/NEWS.Rd:41): Warning: <h4> anchor "changed" already defined
NEWS.html:124:1 (inst/NEWS.Rd:50): Warning: <h4> anchor "added" already defined
NEWS.html:155:1 (inst/NEWS.Rd:65): Warning: <h4> anchor "fixed" already defined
NEWS.html:203:1 (inst/NEWS.Rd:89): Warning: <h4> anchor "changed" already defined
NEWS.html:238:1 (inst/NEWS.Rd:104): Warning: <h4> anchor "fixed" already defined
NEWS.html:258:1 (inst/NEWS.Rd:114): Warning: <h4> anchor "changed" already defined
NEWS.html:274:1 (inst/NEWS.Rd:122): Warning: <h4> anchor "fixed" already defined
NEWS.html:289:1 (inst/NEWS.Rd:129): Warning: <h4> anchor "added" already defined
NEWS.html:307:1 (inst/NEWS.Rd:137): Warning: <h4> anchor "fixed" already defined
checkRd: (-1) klausuR.answ-class.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:18-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:110-111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:112-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:114-116: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:117-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:119-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:121-123: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:124-126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:147: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:152-155: Lost braces in \itemize; meant \describe ?