Running 'spelling.R' [0s]
  Running 'testthat.R' [200s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(tidypopgen)
  Loading required package: dplyr
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:testthat':
  
      matches
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  Loading required package: tibble
  > 
  > test_check("tidypopgen")
  Adding missing grouping variables: `population`
  /usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.4.3/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/AdoptOpenJDK/jdk-11.0.11.9-hotspot/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/sourceforge/ipmiutil:/c/Program Files/Python39:/c/Program Files/Python39/Scripts:/d/Compiler/Ruby/bin:/c/Program Files (x86)/WinSCP:/c/Program Files/gs/gs/bin:/c/Program Files/Supermicro/SuperDoctor5:/c/Program Files/Intel/Intel(R) Memory and Storage Tool:/c/Program Files/PuTTY:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/c/Users/CRAN/AppData/Roaming/TinyTeX/bin/win32:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.4.3/bin/x64/)
  /usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.4.3/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/AdoptOpenJDK/jdk-11.0.11.9-hotspot/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/sourceforge/ipmiutil:/c/Program Files/Python39:/c/Program Files/Python39/Scripts:/d/Compiler/Ruby/bin:/c/Program Files (x86)/WinSCP:/c/Program Files/gs/gs/bin:/c/Program Files/Supermicro/SuperDoctor5:/c/Program Files/Intel/Intel(R) Memory and Storage Tool:/c/Program Files/PuTTY:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/c/Users/CRAN/AppData/Roaming/TinyTeX/bin/win32:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.4.3/bin/x64/)
  [ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
    'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
  • On CRAN (1): 'test_gt_pca.R:348:1'
  • {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
  as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
  
  `actual`:        "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"    
  `expected[2:2]`:                                                      "ggplot"
  
  [ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
  Error: Test failures
  Execution halted